BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
         (268 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 268

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS
Sbjct: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN
Sbjct: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV
Sbjct: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR
Sbjct: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240

Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           GIVSTLDKFSRQSSRRNNVLLQKTEKSE
Sbjct: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268


>gi|315122619|ref|YP_004063108.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496021|gb|ADR52620.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 303

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/268 (75%), Positives = 235/268 (87%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M  +  +LQNS K P+I+LVDPQLGENIGMVARAM NFN+TQLRLVNPRDGWP++KARSS
Sbjct: 35  MAVHMQKLQNSTKSPIIVLVDPQLGENIGMVARAMLNFNITQLRLVNPRDGWPNDKARSS 94

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SANAD VIDSVRVFS+LKEAI+DL+F+YATTAR+R+NFKSV APKEAA+VLNERI SGQN
Sbjct: 95  SANADHVIDSVRVFSSLKEAISDLNFVYATTARSRDNFKSVFAPKEAAVVLNERIHSGQN 154

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           VG+IFG ER GLTNEEIALSNAIISFPVNP F SLNI+QAVL+M WE MENS+V  +KNV
Sbjct: 155 VGLIFGCERSGLTNEEIALSNAIISFPVNPNFSSLNIAQAVLVMAWEWMENSVVVPKKNV 214

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           KE + PAT+GELLSFLDY E SL ERGYFRP E+KKKMLDDL S+FIR ELMR+E+FLLR
Sbjct: 215 KESDIPATRGELLSFLDYTENSLAERGYFRPEERKKKMLDDLRSVFIRLELMRQEIFLLR 274

Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           G++STLD+FSR+S R + V+ QK + + 
Sbjct: 275 GVISTLDRFSRESPRGSLVVPQKKQNNH 302


>gi|222148422|ref|YP_002549379.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
 gi|221735410|gb|ACM36373.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
          Length = 286

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/253 (52%), Positives = 187/253 (73%), Gaps = 2/253 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQLGENIGMVARAM NF L +LRLVNPRDGWPSEKARS+++ AD VID  
Sbjct: 12  AEGPAIILVEPQLGENIGMVARAMANFGLAELRLVNPRDGWPSEKARSAASKADHVIDGA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +++  L+EA+ADL+F+YATTAR R+NFK V +P  AA  L  R  +G+  GI+FGRE+ G
Sbjct: 72  KLYDTLEEALADLNFVYATTARQRDNFKPVASPVTAASTLRTRFLAGEKTGILFGREKSG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           L NE++AL++ I++FPVNP F SLNI+QAVLLM +E M++++  V+          PA+K
Sbjct: 132 LKNEDVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSTMEDVTQTPFQGVDQLPASK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E++   +++E +L+ RGYFRP+ KK +M+D+L ++  R      E+ ++RG+VS+LD+F
Sbjct: 192 EEVIGLFEHMEDALDARGYFRPIHKKARMIDNLRAVLTRRGFTSPEINVMRGVVSSLDRF 251

Query: 250 SRQSSRRNNVLLQ 262
           SR++ R     L+
Sbjct: 252 SRRNPRGAGAPLE 264


>gi|159184955|ref|NP_354849.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|159140233|gb|AAK87634.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 277

 Score =  282 bits (721), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/254 (52%), Positives = 185/254 (72%), Gaps = 2/254 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L+  A+GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD 
Sbjct: 7   ELELVAEGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASKADH 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           VID  RVF  L+EAI DL+F+YATTAR R  FK V AP  AA  L  +  +G+  GI+FG
Sbjct: 67  VIDGTRVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAADTLRTKFKAGEKTGILFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QN 184
           RERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +    + + +  + 
Sbjct: 127 RERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLGETLFQPIEQ 186

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            P+TK ++    +++E +L+ RGYF P EKK KM+D+L ++  R     +E+ + RG++ 
Sbjct: 187 RPSTKEQVFGLFEHIEEALDARGYFHPAEKKPKMVDNLRAVLSRRGFSEQEISVFRGVIR 246

Query: 245 TLDKFSRQSSRRNN 258
           +LD+F RQ  ++  
Sbjct: 247 SLDRFPRQWPKKTG 260


>gi|241204881|ref|YP_002975977.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858771|gb|ACS56438.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 276

 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/246 (53%), Positives = 183/246 (74%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI++ 
Sbjct: 12  AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIEAT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V+  L++A+ADL+F+YATTAR R+ +K V +P  AA  L  R  +G+  GI+FGRERWG
Sbjct: 72  KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEGTGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +  + +        TP+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAMGQTPSTK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L    D LE +L+ RGYF P  KK KM+D+L ++  R     +E+ +LRG++S+LD+F
Sbjct: 192 DQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251

Query: 250 SRQSSR 255
           SR+S R
Sbjct: 252 SRKSPR 257


>gi|86357930|ref|YP_469822.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86282032|gb|ABC91095.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 276

 Score =  280 bits (715), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/250 (53%), Positives = 184/250 (73%), Gaps = 4/250 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++++ AD VI+  
Sbjct: 12  AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQATASKADHVIEGT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L  R  +G+  GI+FGRERWG
Sbjct: 72  KVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAQTLRTRFRAGEATGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +   E       EQ  P+T
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLEAVPFQALEQR-PST 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K +L    D LE +L+ R YF P  KK KM+D+L ++  R     +E+ +LRG++S+LD+
Sbjct: 191 KEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDR 250

Query: 249 FSRQSSRRNN 258
           FSR S R+  
Sbjct: 251 FSRNSPRKGG 260


>gi|110633621|ref|YP_673829.1| RNA methyltransferase [Mesorhizobium sp. BNC1]
 gi|110284605|gb|ABG62664.1| RNA methyltransferase, TrmH family, group 1 [Chelativorans sp.
           BNC1]
          Length = 262

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/244 (54%), Positives = 180/244 (73%), Gaps = 1/244 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP I+LV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++++ AD VID+ 
Sbjct: 12  AEGPAIVLVEPQLGENIGMVARAMANFGLGELRLVKPRDGWPNEKARAAASRADHVIDAT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VF +L  A+ADL+F+YATTAR R+NFK V  P EA + L  R  +GQ  GI+FGRERWG
Sbjct: 72  KVFDDLAGAVADLNFLYATTARPRDNFKPVRGPVEATLQLRARHAAGQRTGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+A+++ I++FPVNP F SLN++QAVLLM +E ++         V  ++ PA +  
Sbjct: 132 LTNEEVAVADEIVTFPVNPAFASLNVAQAVLLMSYEWLKAG-GEGVAPVSPEHVPAPREH 190

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L S +DYL+  L ERGYFR  +KK KM D+L ++F RP    EE+ +LRG++ +L+KFS 
Sbjct: 191 LNSLMDYLDRVLSERGYFRNEDKKPKMFDNLRALFTRPGFTVEELAVLRGVLVSLEKFSP 250

Query: 252 QSSR 255
           +  R
Sbjct: 251 KKPR 254


>gi|116252374|ref|YP_768212.1| rRNA methylase family protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257022|emb|CAK08116.1| putative rRNA methylase family protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 276

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 131/246 (53%), Positives = 182/246 (73%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI+  
Sbjct: 12  AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIEET 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V+  L++A+ADL+F+YATTAR R+ +K V +P  AA  L  R  +G+  GI+FGRERWG
Sbjct: 72  KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEGTGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +  + +        TP+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAMGQTPSTK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L    D LE +L+ RGYF P  KK KM+D+L ++  R     +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251

Query: 250 SRQSSR 255
           SR+S R
Sbjct: 252 SRKSPR 257


>gi|190892001|ref|YP_001978543.1| tRNA/rRNA methyltransferase [Rhizobium etli CIAT 652]
 gi|190697280|gb|ACE91365.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CIAT
           652]
          Length = 276

 Score =  278 bits (712), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 134/250 (53%), Positives = 185/250 (74%), Gaps = 4/250 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GPVIILV+PQ+GENIGMVARAM NF L  LRLVNPRDGWP+EKA+++++ AD VI   
Sbjct: 12  AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L  +  +G+  GI+FGRERWG
Sbjct: 72  RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEATGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++S+   E       EQ  P+T
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSSMEDLEAVPFQALEQR-PST 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K +L    + LE +L+ R YF P  KK KM+D+L ++  R     +E+ +LRG++S+LD+
Sbjct: 191 KEQLFGLFEQLEKALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDR 250

Query: 249 FSRQSSRRNN 258
           F+R S+R+  
Sbjct: 251 FTRNSTRKGG 260


>gi|13470359|ref|NP_101925.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14021098|dbj|BAB47711.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 303

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 135/254 (53%), Positives = 178/254 (70%), Gaps = 2/254 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
             Q    GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD 
Sbjct: 5   DFQRGPGGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADH 64

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           VID+V+VF +L  A+ADL+F++ATTAR R+ FK+V  P EA  VL  R   GQ  GI+FG
Sbjct: 65  VIDAVKVFDDLASALADLNFVFATTARQRDGFKAVRGPVEAGRVLRARHGMGQRTGILFG 124

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQN 184
           RER+GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ +    K      + 
Sbjct: 125 RERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPEM 184

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA+K EL     YLE +LE RGYFRP  KK KM+D+L ++  R      E+ +LRGI+S
Sbjct: 185 KPASKEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIIS 244

Query: 245 TLDKFSRQSSRRNN 258
           +LD+FS    R + 
Sbjct: 245 SLDRFSPAMPRGDG 258


>gi|327190529|gb|EGE57623.1| putative tRNA/rRNA methyltransferase protein [Rhizobium etli
           CNPAF512]
          Length = 276

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/250 (53%), Positives = 183/250 (73%), Gaps = 4/250 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GPVIILV+PQ+GENIGMVARAM NF L  LRLVNPRDGWP+EKA+++++ AD VI   
Sbjct: 12  AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L  +  +G+  GI+FGRERWG
Sbjct: 72  RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEATGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +   E       EQ  P+T
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVPFQALEQR-PST 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K +L    D LE +L+ R YF P  KK KM+D+L ++  R     +E+ +LRG++S+LD+
Sbjct: 191 KEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDR 250

Query: 249 FSRQSSRRNN 258
           F+R S R+  
Sbjct: 251 FTRNSPRKGG 260


>gi|222086156|ref|YP_002544688.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723604|gb|ACM26760.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 280

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/246 (51%), Positives = 183/246 (74%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP +ILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++++ AD +I++ 
Sbjct: 12  AEGPAVILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQATASKADHIIEAT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V+  L++A+ADL+F+YATTAR R+ FK V +P  AA  L  R  +G+  GI+FGRERWG
Sbjct: 72  KVYDTLEQAVADLNFVYATTARERDGFKPVRSPVVAAETLRARFKAGEGTGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M+  +  V++      +  P+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKTGMEDVAAVPFQATEQRPSTK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L    D LE +L+ R YF P  KK KM+D+L ++  R     +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDARNYFHPAGKKPKMIDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251

Query: 250 SRQSSR 255
           +R+S R
Sbjct: 252 TRKSPR 257


>gi|260460844|ref|ZP_05809094.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
           opportunistum WSM2075]
 gi|259033421|gb|EEW34682.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
           opportunistum WSM2075]
          Length = 306

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/250 (54%), Positives = 178/250 (71%), Gaps = 2/250 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           SA GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+
Sbjct: 11  SAAGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDA 70

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+VF +L  A+ADL+F++ATTAR R+ FK+V  P EA  VL  R   GQ  GI+FGRER+
Sbjct: 71  VKVFDDLASALADLNFVFATTARQRDGFKTVRGPVEAGRVLRARHGMGQRTGILFGRERF 130

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPAT 188
           GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ +    +         PA+
Sbjct: 131 GLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETRTNFSGPDMKPAS 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K EL     YLE +LE RGYFRP  KK KM+D+L ++  R      E+ +LRGI+S+LD+
Sbjct: 191 KEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIISSLDR 250

Query: 249 FSRQSSRRNN 258
           FS    R + 
Sbjct: 251 FSPAMPRGDG 260


>gi|209549544|ref|YP_002281461.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535300|gb|ACI55235.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 276

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/246 (53%), Positives = 181/246 (73%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++++ AD VI + 
Sbjct: 12  AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIAAT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V+  L++A+ADL+F+YATTAR R+ +K V +P  AA  L  +   G+  GI+FGRERWG
Sbjct: 72  KVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRAKFRVGEGTGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +  V +        TP+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDVGAVPFQAMGQTPSTK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L    D LE +L+ RGYF P  KK KM+D+L ++  R     +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251

Query: 250 SRQSSR 255
           SR+S R
Sbjct: 252 SRKSPR 257


>gi|227822189|ref|YP_002826160.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
 gi|227341189|gb|ACP25407.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
          Length = 275

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/245 (52%), Positives = 185/245 (75%), Gaps = 2/245 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +GP IIL  PQLGENIGMVARAM NF L++LRLVNPRDGWP+EKARS+++ AD VID  +
Sbjct: 13  EGPAIILAYPQLGENIGMVARAMANFGLSELRLVNPRDGWPNEKARSAASRADHVIDGAK 72

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++++L+EAIADL+F+YATTAR+R+ +K V +P  AA  L +R   G+ +GIIFGRER GL
Sbjct: 73  LYNSLEEAIADLNFVYATTARDRDGYKPVRSPIVAARTLRQRFKVGEAIGIIFGRERTGL 132

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKG 190
           TNEE+AL++ I++FPVNP F SLN++QAVLLM +E M+  + S ++   +  +  PATK 
Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWMKTGMESEDQTSFQAIEQRPATKE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            L    D+LE +L+ R YFR  +K+ K++++L ++  RP     E+ +LRG++S+LD+F+
Sbjct: 193 HLQGLFDHLEDALDARNYFRSADKRPKLVENLRAVLTRPSFSESEIQVLRGVISSLDRFT 252

Query: 251 RQSSR 255
           R++ R
Sbjct: 253 RENPR 257


>gi|325293270|ref|YP_004279134.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325061123|gb|ADY64814.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 280

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/248 (52%), Positives = 181/248 (72%), Gaps = 2/248 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L+  A+GP IILV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++++ AD 
Sbjct: 7   ELELVAEGPAIILVEPQLGENIGMVARAMANFGLAELRLVKPRDGWPNEKARAAASKADH 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           VID  +VF  L+EAI DL+F+YATTAR R  FK V AP  AA  L  +  +G+  GI+FG
Sbjct: 67  VIDGTKVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAAGTLRAKFKAGERTGILFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QN 184
           RERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +   ++ +    + 
Sbjct: 127 RERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLDETLFHPIEQ 186

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            P+TK ++    +++E +L+ RGYF P EKK KM+D+L ++  R     +E+ + RG++ 
Sbjct: 187 RPSTKEQVFGLFEHIEEALDARGYFHPPEKKPKMVDNLRAVLSRRGFSEQEISVFRGVIR 246

Query: 245 TLDKFSRQ 252
           +LD+F RQ
Sbjct: 247 SLDRFPRQ 254


>gi|150396729|ref|YP_001327196.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
 gi|150028244|gb|ABR60361.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium medicae
           WSM419]
          Length = 276

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/245 (53%), Positives = 182/245 (74%), Gaps = 2/245 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +GP IIL  PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID  +
Sbjct: 13  EGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAK 72

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++  L+EA+ADL+F+YATTAR+R+ FK V +P  AA  L +R   GQ VGIIFGRER GL
Sbjct: 73  LYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRQRFSVGQKVGIIFGRERTGL 132

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190
           TN E+AL++ I++FPVNP F SLN++QAVLLM +E ++  + S ++      +  PATK 
Sbjct: 133 TNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMASEDETFFQPSEQRPATKE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L    ++LE +L+ R YFR  +KK K++++L ++  RP     E+ +LRG++S+LD+F+
Sbjct: 193 QLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRFT 252

Query: 251 RQSSR 255
           R+S R
Sbjct: 253 RESPR 257


>gi|15965543|ref|NP_385896.1| hypothetical protein SMc00482 [Sinorhizobium meliloti 1021]
 gi|307302663|ref|ZP_07582419.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           BL225C]
 gi|307318510|ref|ZP_07597944.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           AK83]
 gi|15074724|emb|CAC46369.1| Hypothetical tRNA/rRNA methyltransferase [Sinorhizobium meliloti
           1021]
 gi|306895850|gb|EFN26602.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           AK83]
 gi|306903027|gb|EFN33618.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           BL225C]
          Length = 276

 Score =  274 bits (701), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 129/245 (52%), Positives = 181/245 (73%), Gaps = 2/245 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +GP IIL  PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID  +
Sbjct: 13  EGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAK 72

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++  L+EA+ADL+F+YATTAR+R+ FK V +P  AA  L  R   G+ VGIIFGRER GL
Sbjct: 73  LYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRHRFKEGEKVGIIFGRERTGL 132

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190
           TN E+AL++ I++FPVNP F SLN++QAVLLM +E ++  + S ++      Q  PATK 
Sbjct: 133 TNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMTSEDETSFQASQQRPATKE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L    ++LE +L+ R YFR  +KK K++++L ++  RP     E+ +LRG++S+LD+F+
Sbjct: 193 QLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRFT 252

Query: 251 RQSSR 255
           R++ R
Sbjct: 253 RENPR 257


>gi|319784058|ref|YP_004143534.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169946|gb|ADV13484.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 304

 Score =  274 bits (701), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 134/247 (54%), Positives = 175/247 (70%), Gaps = 2/247 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+V V
Sbjct: 14  GPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDAVTV 73

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L  A+ADL+F++ATTAR R+ FKSV  P EA  +L  R   GQ  GI+FGRER+GL 
Sbjct: 74  FDDLASALADLNFVFATTARQRDGFKSVRGPVEAGRLLRARHAMGQRTGILFGRERFGLY 133

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGE 191
           N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ +    K         PA+K E
Sbjct: 134 NDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPDMKPASKEE 193

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L     YLE +LE RGYFRP  KK KM+D+L ++  R      E+ +LRGI+S+LD+FS 
Sbjct: 194 LHGLFAYLEGALEARGYFRPAPKKPKMIDNLRAVLTRAGFAEPELKVLRGIISSLDRFSP 253

Query: 252 QSSRRNN 258
              R + 
Sbjct: 254 AMPRGDG 260


>gi|255605057|ref|XP_002538330.1| conserved hypothetical protein [Ricinus communis]
 gi|223512695|gb|EEF24052.1| conserved hypothetical protein [Ricinus communis]
          Length = 259

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/246 (51%), Positives = 181/246 (73%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++++ AD +I++ 
Sbjct: 12  AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQATASKADHIIEAT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V+  L++AIADL+F+YATTAR R  +K V +P  AA  L  +  +G+  GI+FGRERWG
Sbjct: 72  KVYDTLEQAIADLNFVYATTARERYGYKPVRSPVAAAETLRAKFKAGEGTGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +  + +         P+TK
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVPFQAVGQRPSTK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L    D LE +L+ R YF P  KK KM+D+L ++  R     +E+ +LRG++S+LD+F
Sbjct: 192 EQLFGLFDQLEEALDARNYFHPAGKKPKMVDNLRAVLSRRAFTEQEISVLRGVISSLDRF 251

Query: 250 SRQSSR 255
           SR+S R
Sbjct: 252 SRKSPR 257


>gi|49475602|ref|YP_033643.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238409|emb|CAF27636.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 278

 Score =  258 bits (658), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 130/244 (53%), Positives = 172/244 (70%), Gaps = 2/244 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI
Sbjct: 9   KNLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPREEFPNEKARAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +   +F  L++AIADLH+++ATTAR R  FK+V +  EAAI+L +R    Q  GI+FGRE
Sbjct: 69  NDAVIFDTLRDAIADLHYVFATTARERCGFKTVKSAVEAAIILRQRENIKQRTGIVFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186
           RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M++ +  +        Q  P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLEDANDTAFRAVQMEP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K     FL  LE +L+ RGYFRP E+K+ ML +L S+F R      EV  LRGI+S+L
Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRFLRGIISSL 248

Query: 247 DKFS 250
           D FS
Sbjct: 249 DHFS 252


>gi|163868314|ref|YP_001609523.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017970|emb|CAK01528.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score =  257 bits (657), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 133/249 (53%), Positives = 175/249 (70%), Gaps = 2/249 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI
Sbjct: 9   ENLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPRETFPNEKARAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++  +F  L+++IADLH+++ATTAR R  FK+V +  EAA VL +R   G   GI+FGRE
Sbjct: 69  NNAVIFDTLRDSIADLHYVFATTARERCGFKTVKSAVEAANVLRQRENIGHKTGIVFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTP 186
           RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+  +  VS       +  P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLENVSDTAFRAPEMEP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K     FL  LE +L+ RGYFRP E+K+ ML +L S+F R      EV LLRGI+S+L
Sbjct: 189 ANKTMFHGFLSQLEEALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248

Query: 247 DKFSRQSSR 255
           D FS Q  R
Sbjct: 249 DHFSPQYPR 257


>gi|240850641|ref|YP_002972041.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
 gi|240267764|gb|ACS51352.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
          Length = 276

 Score =  255 bits (651), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 133/249 (53%), Positives = 174/249 (69%), Gaps = 2/249 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GPVIILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKA ++++ AD VI
Sbjct: 9   ENLTNGPVIILVEPQLPENIGMVARAMANFGLSKLRLVKPREMFPNEKAIAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +   +F+ L+++IADLH+++ATTAR R  FK+V +  EAA VL +R   G   GI+FGRE
Sbjct: 69  NDTVIFNTLRDSIADLHYVFATTARERCGFKTVKSAVEAASVLRQRESIGHKTGIVFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTP 186
           RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+  +  VS       +  P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLEDVSDTAFRAAEMEP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K     FL  LE +L  RGYFRP+E+K+ ML +L S+F R      EV LLRGI+S+L
Sbjct: 189 ANKTIFHGFLSQLEEALNIRGYFRPLERKEVMLANLRSVFTRANFSEPEVRLLRGIISSL 248

Query: 247 DKFSRQSSR 255
           D FS Q  R
Sbjct: 249 DHFSPQYPR 257


>gi|49474226|ref|YP_032268.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239730|emb|CAF26112.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 278

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 129/260 (49%), Positives = 177/260 (68%), Gaps = 2/260 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GP+IILV+PQL +NIGMVARAM NF L++LRLV PR+ +P++KAR++++ AD VI
Sbjct: 9   KNLTNGPIIILVEPQLPDNIGMVARAMANFGLSKLRLVKPREEFPNDKARAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +   +F  L +AIADLH+++ATTAR R  FK+V +  EAA +L +R   G   GI+FGRE
Sbjct: 69  NDAVIFDTLHDAIADLHYVFATTARERCGFKTVKSAVEAASMLRQRENIGHRTGIVFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTP 186
           RWGL N EI+L + II+FPVNP F SLNI+QAVLLM +E M++ +  ++       +  P
Sbjct: 129 RWGLENYEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLENLNDTAFRAAEMEP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K     FL  LE +L+ RGYFRP E+K+ ML +L S+F R      EV LLRGI+S+L
Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248

Query: 247 DKFSRQSSRRNNVLLQKTEK 266
           D FS +  R +   + +  K
Sbjct: 249 DHFSPKFPRGSGAPVDRDRK 268


>gi|218508182|ref|ZP_03506060.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli Brasil
           5]
          Length = 227

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/217 (56%), Positives = 161/217 (74%), Gaps = 4/217 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GPVIILV+PQ+GENIGMVARAM NF L  LRLVNPRDGWP+EKA+++++ AD VI   
Sbjct: 12  AEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L  +   G+  GI+FGRERWG
Sbjct: 72  RVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRGGEATGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           LTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +   E       EQ  P+T
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVPFQALEQR-PST 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
           K +L    D LE +L+ R YF P  KK KM+D+L ++
Sbjct: 191 KEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAV 227


>gi|306844095|ref|ZP_07476689.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
 gi|306275538|gb|EFM57270.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
          Length = 276

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYGDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V +    P A K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251

Query: 250 SRQSSR 255
           + +  R
Sbjct: 252 TPKKPR 257


>gi|254719254|ref|ZP_05181065.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|256369620|ref|YP_003107130.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
           4915]
 gi|265984253|ref|ZP_06096988.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306838004|ref|ZP_07470862.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
 gi|255999782|gb|ACU48181.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
           4915]
 gi|264662845|gb|EEZ33106.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306406928|gb|EFM63149.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
          Length = 276

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V +    P A K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251

Query: 250 SRQSSR 255
           + +  R
Sbjct: 252 TPKKPR 257


>gi|148560334|ref|YP_001259115.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|225627665|ref|ZP_03785702.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
           Cudo]
 gi|237815613|ref|ZP_04594610.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
           2308 A]
 gi|260546656|ref|ZP_05822395.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260565552|ref|ZP_05836036.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260566275|ref|ZP_05836745.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261758385|ref|ZP_06002094.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265999435|ref|ZP_05466349.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|297248503|ref|ZP_06932221.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|148371591|gb|ABQ61570.1| RNA methyltransferase, TrmH family, group 1 [Brucella ovis ATCC
           25840]
 gi|225617670|gb|EEH14715.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
           Cudo]
 gi|237788911|gb|EEP63122.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
           2308 A]
 gi|260095706|gb|EEW79583.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260151620|gb|EEW86714.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155793|gb|EEW90873.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261738369|gb|EEY26365.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|263093946|gb|EEZ17880.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175672|gb|EFH35019.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
          Length = 291

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 27  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 86

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 87  VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 146

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V +    P A K
Sbjct: 147 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 206

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 207 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 266

Query: 250 SRQSSR 255
           + +  R
Sbjct: 267 TPKKPR 272


>gi|17987077|ref|NP_539711.1| SpoU rRNA methylase family [Brucella melitensis bv. 1 str. 16M]
 gi|23502073|ref|NP_698200.1| RNA methyltransferase [Brucella suis 1330]
 gi|62290107|ref|YP_221900.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700030|ref|YP_414604.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|161619151|ref|YP_001593038.1| RNA methyltransferase [Brucella canis ATCC 23365]
 gi|163843461|ref|YP_001627865.1| RNA methyltransferase [Brucella suis ATCC 23445]
 gi|189024345|ref|YP_001935113.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225852692|ref|YP_002732925.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
 gi|254689416|ref|ZP_05152670.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|254693901|ref|ZP_05155729.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|254697551|ref|ZP_05159379.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701936|ref|ZP_05163764.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|254704481|ref|ZP_05166309.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|254706623|ref|ZP_05168451.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|254710267|ref|ZP_05172078.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|254714264|ref|ZP_05176075.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|254717700|ref|ZP_05179511.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|254730445|ref|ZP_05189023.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|256031761|ref|ZP_05445375.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|256044846|ref|ZP_05447750.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113751|ref|ZP_05454555.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|256159931|ref|ZP_05457649.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|256255162|ref|ZP_05460698.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|256257662|ref|ZP_05463198.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260168895|ref|ZP_05755706.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|260754938|ref|ZP_05867286.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758154|ref|ZP_05870502.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260761980|ref|ZP_05874323.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883948|ref|ZP_05895562.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261214190|ref|ZP_05928471.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219543|ref|ZP_05933824.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261222359|ref|ZP_05936640.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261314083|ref|ZP_05953280.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261317829|ref|ZP_05957026.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322038|ref|ZP_05961235.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261752502|ref|ZP_05996211.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755161|ref|ZP_05998870.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|265988859|ref|ZP_06101416.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991274|ref|ZP_06103831.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995110|ref|ZP_06107667.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998324|ref|ZP_06110881.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|294852531|ref|ZP_06793204.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|17982735|gb|AAL51975.1| spou family of rRNA methylases [Brucella melitensis bv. 1 str. 16M]
 gi|23348030|gb|AAN30115.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis 1330]
 gi|62196239|gb|AAX74539.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616131|emb|CAJ11174.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           family, group 1 [Brucella melitensis biovar Abortus
           2308]
 gi|161335962|gb|ABX62267.1| RNA methyltransferase, TrmH family, group 1 [Brucella canis ATCC
           23365]
 gi|163674184|gb|ABY38295.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis ATCC
           23445]
 gi|189019917|gb|ACD72639.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225641057|gb|ACO00971.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
           ATCC 23457]
 gi|260668472|gb|EEX55412.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672412|gb|EEX59233.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675046|gb|EEX61867.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873476|gb|EEX80545.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260915797|gb|EEX82658.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920943|gb|EEX87596.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260924632|gb|EEX91200.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261294728|gb|EEX98224.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297052|gb|EEY00549.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261303109|gb|EEY06606.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261742255|gb|EEY30181.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744914|gb|EEY32840.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552792|gb|EEZ08782.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766223|gb|EEZ12012.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002058|gb|EEZ14633.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661056|gb|EEZ31317.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|294821120|gb|EFG38119.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|326409214|gb|ADZ66279.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
 gi|326538923|gb|ADZ87138.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
           M5-90]
          Length = 276

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 125/246 (50%), Positives = 176/246 (71%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V +    P A K
Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251

Query: 250 SRQSSR 255
           + +  R
Sbjct: 252 TPKKPR 257


>gi|319898916|ref|YP_004159009.1| RNA methyltransferase [Bartonella clarridgeiae 73]
 gi|319402880|emb|CBI76431.1| RNA methyltransferase [Bartonella clarridgeiae 73]
          Length = 277

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/258 (48%), Positives = 177/258 (68%), Gaps = 2/258 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + QN   GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++++ AD 
Sbjct: 7   KCQNVTNGPIIILVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVKATASKADH 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +I+   +F  L++AIADL+++YATTAR R  FK+V +  EAA +L      G   GI+FG
Sbjct: 67  IINDTLIFDTLRDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQN 184
           RERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +  ++       + 
Sbjct: 127 RERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLNDTAFRAVEL 186

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA K  L  FL  LE +L+ RGYFRP E+KK M+ ++ S+F R      E+ LLRGI+S
Sbjct: 187 KPANKATLHGFLSQLEDALDVRGYFRPQERKKVMVTNIRSVFTRANFSESEIQLLRGIIS 246

Query: 245 TLDKFSRQSSRRNNVLLQ 262
           +LD FS +  R +   L+
Sbjct: 247 SLDHFSPKFPRGSGAPLE 264


>gi|319404223|emb|CBI77816.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 273

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/244 (50%), Positives = 170/244 (69%), Gaps = 2/244 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           QN   GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD +I
Sbjct: 9   QNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARATASKADHII 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +   +F  L +AIADL+++YATTAR R  FK+V +  EAA +L      G   GI+FGRE
Sbjct: 69  NDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186
           RWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +  S        +  P
Sbjct: 129 RWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTAFRAVELKP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K  L  FL  LE +L+ RGYFRP E+K+ M+ ++ S+F R      E+ LLRG++S+L
Sbjct: 189 ADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVISSL 248

Query: 247 DKFS 250
           D FS
Sbjct: 249 DHFS 252


>gi|163759594|ref|ZP_02166679.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
 gi|162283191|gb|EDQ33477.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
          Length = 276

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/245 (48%), Positives = 168/245 (68%), Gaps = 2/245 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP IIL++PQLGENIGMVARAM NF L+ LR+VNPRDGWP+EKA S+++ AD VI+S +V
Sbjct: 14  GPAIILMEPQLGENIGMVARAMANFGLSNLRIVNPRDGWPNEKAISAASRADHVIESAKV 73

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L+ A ADL+F++ATTAR R+  K V  P EA  VL  R  +G+  GI+FGRER GL 
Sbjct: 74  FETLEAATADLNFVFATTARPRDGHKPVRGPVEAGTVLRTRENAGEKTGILFGRERIGLR 133

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGE 191
           N E+ L++ I++FPVNP + SLNI+QAVLL+ +E +++ +    +      +  PA K +
Sbjct: 134 NWEVGLADEIVTFPVNPAYASLNIAQAVLLISYEWLKSGLADPHETAFSAPEVEPAPKTD 193

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      +E  L+ RGYFR  +K+ K +D+L ++  RP    +E+ +LRG+ ++ D+F R
Sbjct: 194 LHGLFGQIEEGLDARGYFRSDDKRMKAIDNLRAVLTRPGFSTDEINVLRGVFASFDRFDR 253

Query: 252 QSSRR 256
             +RR
Sbjct: 254 SGNRR 258


>gi|319407233|emb|CBI80872.1| RNA methyltransferase [Bartonella sp. 1-1C]
          Length = 273

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 124/244 (50%), Positives = 170/244 (69%), Gaps = 2/244 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           QN   GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD +I
Sbjct: 9   QNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARATASKADHII 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +   +F  L +AIADL+++YATTAR R  FK+V +  EAA +L      G   GI+FGRE
Sbjct: 69  NDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRCYENIGHKTGILFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186
           RWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +  S        +  P
Sbjct: 129 RWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTAFRAVELKP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K  L  FL  LE +L+ RGYFRP E+K+ M+ ++ S+F R      E+ LLRG++S+L
Sbjct: 189 ADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVISSL 248

Query: 247 DKFS 250
           D FS
Sbjct: 249 DHFS 252


>gi|153009325|ref|YP_001370540.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561213|gb|ABS14711.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum anthropi
           ATCC 49188]
          Length = 281

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/246 (49%), Positives = 175/246 (71%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +  + V    +   A K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLETETETVFRGPELELAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL    ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG++++LD F
Sbjct: 192 NELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 251

Query: 250 SRQSSR 255
           + +  R
Sbjct: 252 TPKKPR 257


>gi|239832084|ref|ZP_04680413.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824351|gb|EEQ95919.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
           intermedium LMG 3301]
          Length = 302

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 122/246 (49%), Positives = 175/246 (71%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 33  AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 92

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 93  VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 152

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +  + V    +   A K
Sbjct: 153 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENETETVFRGPELELAPK 212

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL    ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG++++LD F
Sbjct: 213 QELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 272

Query: 250 SRQSSR 255
           S +  R
Sbjct: 273 SPKKPR 278


>gi|319408555|emb|CBI82208.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
          Length = 279

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 126/263 (47%), Positives = 180/263 (68%), Gaps = 4/263 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           QN   GP+I+LV+PQL ENIGMVARAM NF L+ LRLV PR+ +P+EKAR++++ AD +I
Sbjct: 9   QNIMNGPIIVLVEPQLPENIGMVARAMANFGLSNLRLVKPREVFPNEKARAAASKADHII 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D+  VF+ L +AIADL+++  TTAR R  FK+V +  EAA +L      G  +GI+FGRE
Sbjct: 69  DNALVFNTLYDAIADLNYVLGTTARKRCGFKTVRSAVEAAGILRYHEGIGHKIGILFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNT 185
           RWGL N+EI+ ++ I++FPVNP F SLNI+QAVLLM +E M+   + +  +   V E  +
Sbjct: 129 RWGLKNDEISFADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLDDLNDTAFRVAEMKS 188

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A K  L  FL  LE +L+ RGYFRP E+K+ M+ ++ S+F R +L   E+ LLRG++S+
Sbjct: 189 -ADKATLHGFLSQLENALDSRGYFRPQERKEVMVLNIRSVFTRAKLSESEIRLLRGVISS 247

Query: 246 LDKFSRQSSRRNNVLLQKTEKSE 268
           LD FS +  R +   + +  K +
Sbjct: 248 LDHFSPEFPRGSGAPVGRNRKKK 270


>gi|304391439|ref|ZP_07373381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
           R2A130]
 gi|303295668|gb|EFL90026.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
           R2A130]
          Length = 261

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/247 (48%), Positives = 172/247 (69%), Gaps = 1/247 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GPV+ILV+PQ+GENIG  ARAM NF L +LRLV+PRDGWP+  A++++A AD +ID+V
Sbjct: 12  AEGPVVILVNPQMGENIGGAARAMANFGLAELRLVDPRDGWPNPIAKANAAKADHIIDNV 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VF  L++A+ADL F+YATTAR R   K V  P EAA  L  R  +G+  GI+FGRER G
Sbjct: 72  QVFDLLEDALADLQFVYATTARQREMLKPVRGPAEAASTLRTRHRAGERTGILFGRERAG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L + E+AL++ I++FPVNP F SLNI+QAVLLM +E M +  +    + +  + PA K +
Sbjct: 132 LESVEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMASGEIELPIH-QPPSEPAEKDD 190

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L     +LE +LE+  YFRP  KK  M+++L +IF +  L ++E+  LRG+V+TL+    
Sbjct: 191 LFGLFGHLEGALEDMHYFRPSHKKATMVENLRNIFQKAGLSKQEIHALRGVVATLEGRKT 250

Query: 252 QSSRRNN 258
           +  R++ 
Sbjct: 251 RPRRQHG 257


>gi|256061276|ref|ZP_05451426.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261325283|ref|ZP_05964480.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261301263|gb|EEY04760.1| RNA methyltransferase [Brucella neotomae 5K33]
          Length = 276

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 175/246 (71%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ + SEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFLSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V +    P A K
Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251

Query: 250 SRQSSR 255
           + +  R
Sbjct: 252 TPKKPR 257


>gi|319405661|emb|CBI79284.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 276

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 122/246 (49%), Positives = 171/246 (69%), Gaps = 2/246 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + QN   GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++++ AD 
Sbjct: 7   KCQNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVQATASKADH 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +I+   +F  L +AIADL+++YATTAR R  FK+V +  EAA +L      G   GI+FG
Sbjct: 67  IINDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQN 184
           RERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +  +S       + 
Sbjct: 127 RERWGLKNNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLSDTAFRAIKL 186

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA K  L  FL  LE +L+ RGYFRP E+K+ M+ ++ S+F R      E+ LLRG++S
Sbjct: 187 KPADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQLLRGVIS 246

Query: 245 TLDKFS 250
           +LD FS
Sbjct: 247 SLDHFS 252


>gi|118588605|ref|ZP_01546013.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
           12614]
 gi|118438591|gb|EAV45224.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
           12614]
          Length = 270

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 121/240 (50%), Positives = 167/240 (69%), Gaps = 2/240 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +AK P +IL +PQLGENIG  ARAM NF L  LR+VNPRDGWPSEKAR+S++ AD VID 
Sbjct: 15  TAKPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARASASRADHVIDK 74

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+VF +++ AIADL F++ATTAR+R   K V  P EAA    E    G   G +FGRERW
Sbjct: 75  VQVFDSVEAAIADLQFVFATTARSREVPKPVRGPDEAARKSVELGEQGAATGYLFGRERW 134

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPAT 188
           GL NEE+ALS+ I++ PV+P F SLNI+QAVL+  +E  + +   +   +  ++ + PA 
Sbjct: 135 GLNNEEVALSDEIVTLPVDPDFASLNIAQAVLVCAYEWRKIATAGALPFLLSEDVHPPAK 194

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K ELL F ++LE +L++  +FRP E++  M+  L +IF + EL  +EV  LRG+V++L+K
Sbjct: 195 KDELLRFFEHLEGALDKATFFRPPERRPHMVRTLRNIFQKAELTDQEVRALRGVVASLEK 254


>gi|254502928|ref|ZP_05115079.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
           DFL-11]
 gi|222438999|gb|EEE45678.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
           DFL-11]
          Length = 270

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/257 (46%), Positives = 176/257 (68%), Gaps = 4/257 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+ P +IL +PQLGENIG  ARAM NF L  LR+VNPRDGWPSEKAR++++ AD VID 
Sbjct: 15  TARPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARAAASRADHVIDK 74

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+VF   + AIADL+F+YATTAR+R   K V  P EAA+   +       VG +FGRERW
Sbjct: 75  VQVFETTEAAIADLNFVYATTARSREVPKPVRGPDEAAVKAVDLGERQHGVGYLFGRERW 134

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPAT 188
           GL NEE+AL++ I++ PV+P F SLNI+QAVL+  +E  + +       +  +E++ PA+
Sbjct: 135 GLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTASKGELPFLLSEEEHPPAS 194

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K ++L   ++LE SL+E  +FRP E++  M+ +L +IF + EL ++EV  LRG+++ L++
Sbjct: 195 KDDILRMFEHLESSLDEVSFFRPPERRPHMVRNLRNIFQKAELSQQEVRTLRGVIAALER 254

Query: 249 FSRQSSRRNNVLLQKTE 265
             R++  R    + +TE
Sbjct: 255 --RETRPRKTGDVDETE 269


>gi|90420931|ref|ZP_01228836.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334906|gb|EAS48678.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 311

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/236 (47%), Positives = 166/236 (70%), Gaps = 2/236 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP I+LV+PQLGENIGMVARAM NF L+ LRLV+PRDGWP+E+A ++++ AD VI++ R+
Sbjct: 38  GPAIVLVEPQLGENIGMVARAMANFGLSDLRLVSPRDGWPNERAVAAASRADHVIEAARL 97

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +++ A+ADL F+YATTAR R++FK V  P+ AA  L  RI +GQ+ GI+FGRER+GL+
Sbjct: 98  YDSVEAAVADLTFVYATTARARDSFKPVREPETAAANLRARIGAGQSAGILFGRERFGLS 157

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLM--VWECMENSIVSSEKNVKEQNTPATKGE 191
           NEE+ L++ I++FPV+P F SLNI+QAVLL+   W    ++ V+  +    +  PA K +
Sbjct: 158 NEEVGLADEIVTFPVDPDFASLNIAQAVLLVSYAWRMAGSADVTKPRFSAPEVPPARKED 217

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           L   L++LE SL+  GYF P  K++ +   L ++  +      EV  +RG++ + D
Sbjct: 218 LHRLLEHLETSLDRNGYFYPEHKREALAQKLRTMLTKAGFSEPEVRTMRGVIRSFD 273


>gi|121601814|ref|YP_989116.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120613991|gb|ABM44592.1| RNA methyltransferase, TrmH family, group 1 [Bartonella
           bacilliformis KC583]
          Length = 275

 Score =  236 bits (601), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 128/260 (49%), Positives = 177/260 (68%), Gaps = 2/260 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GPVI+LV+PQL ENIGMVARAM NF L+ LRL+NPR+ +P++KA+++++ AD VI
Sbjct: 9   KNVMDGPVIVLVEPQLPENIGMVARAMANFGLSDLRLINPRETFPNDKAKAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D+  VF+ L +AIADLH+I+ TTAR R  FK + +  EAA +L +    G   GI+FGRE
Sbjct: 69  DNALVFNTLHDAIADLHYIFGTTARKRYGFKIIKSAVEAASILRQHENLGHKTGILFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTP 186
           RWGL N+EI+L N I++FPVNP F SLNI+QAVLLM +E M++ +  VS      E+   
Sbjct: 129 RWGLKNDEISLVNEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENVSDTAFRAEEMKL 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A +  L   L  LE +L+ RGYFRP E+K+ M+ ++ S+F R      EV LLRGIVS+L
Sbjct: 189 ADRETLHGLLFQLEDALDVRGYFRPQERKEIMVSNMRSVFTRANFSESEVRLLRGIVSSL 248

Query: 247 DKFSRQSSRRNNVLLQKTEK 266
           + FS +  R +    ++  K
Sbjct: 249 NHFSPKFPRGSGAPAERDRK 268


>gi|328543187|ref|YP_004303296.1| tRNA/rRNA methyltransferase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412933|gb|ADZ69996.1| Probable tRNA/rRNA methyltransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 289

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/236 (48%), Positives = 164/236 (69%), Gaps = 2/236 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +IL +PQLGENIG  ARAM NF L  LRLVNPRDGWPS+KAR++++ AD VID+V+VF
Sbjct: 19  PAVILCEPQLGENIGTAARAMANFGLVDLRLVNPRDGWPSDKARAAASRADHVIDAVQVF 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+ A+ADL F++ATTAR+R   K V  P EAA  +     +G   G +FGRERWGL N
Sbjct: 79  DSLEAAVADLSFVFATTARSREVAKPVRGPDEAAATVVGYGATGLATGYLFGRERWGLNN 138

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGEL 192
           +E+AL++ I++ PV+P F SLNI+QAVL+  +E  + +   +      ++ N PA K +L
Sbjct: 139 DEVALADEIVTLPVDPAFASLNIAQAVLVCAYEWRKTATRGALPFALDEDANPPAGKADL 198

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L F ++LE +L+  G+ RPVE++  M+ ++ +IF +  L  +EV  LRGIV+ L++
Sbjct: 199 LRFFEHLEGALDGAGFLRPVERRPHMVRNIRNIFQKARLTDQEVKTLRGIVAALER 254


>gi|254470267|ref|ZP_05083671.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
           JE062]
 gi|211960578|gb|EEA95774.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
           JE062]
          Length = 256

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 165/243 (67%), Gaps = 2/243 (0%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N+A  PV++L +PQLGENIGMVARAM NF L  LRL+NPRDGWPSEKARS+S+ A  VID
Sbjct: 9   NTAIPPVVVLCEPQLGENIGMVARAMANFGLHDLRLINPRDGWPSEKARSASSRAHHVID 68

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + RVF +++EA+ADL  ++ATTAR+R+  K V+ P EAA     +   G   G +FGRER
Sbjct: 69  AARVFDSVEEAVADLKLVFATTARSRDIPKPVVGPDEAANESVAQGLRGIPSGYLFGRER 128

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPA 187
           WGL N+E+AL+N I++ PV+P + SLNI+QAVL+  +E    +   +     +  +  PA
Sbjct: 129 WGLNNDEVALANKIVTLPVDPTYASLNIAQAVLVCAYEWRRVATAGALPFSLDDYEGEPA 188

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T+  +    D+LE  L+ RG+FRPVEKK   +  L +IF + +L   EV ++RG++S  +
Sbjct: 189 TQESIQRMFDHLESGLDARGFFRPVEKKPVTIRRLRNIFQKADLTDNEVRIMRGVISCFE 248

Query: 248 KFS 250
           K+ 
Sbjct: 249 KYG 251


>gi|114707293|ref|ZP_01440190.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537174|gb|EAU40301.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 256

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 165/240 (68%), Gaps = 4/240 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P IILV+PQ+GENIGMVARAM NF L  LRLV PRDGWP+EKAR++++ AD V+D+ RVF
Sbjct: 13  PAIILVEPQMGENIGMVARAMANFELADLRLVKPRDGWPNEKARATASRADHVLDAARVF 72

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L++A+ADL  +YATTAR R+++K V  P+EAA  L     +G+  G+IFGRE++GL N
Sbjct: 73  EKLEDALADLSLVYATTARARDSYKPVRGPEEAAERLVAHAPAGK-TGVIFGREKYGLEN 131

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLM--VWECMENSIVSSEKNVKEQNTPATKGEL 192
           +E+ L++ I++FPVNP F SLNI+QAVLL+   W    N    + +     N PA K +L
Sbjct: 132 DEVGLADEIVTFPVNPKFASLNIAQAVLLVSYAWRNASNP-SKTPRFSAPPNPPAEKADL 190

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
               D+LE  L+ R YF P EK++ ++ +L ++  + +   +EV  LRG++ +LD+ ++ 
Sbjct: 191 YRLFDHLEAMLDCRNYFFPPEKREALVQNLRTMLTKAQFSEQEVRSLRGVLKSLDRPAQH 250


>gi|307945605|ref|ZP_07660941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
           TrichSKD4]
 gi|307771478|gb|EFO30703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
           TrichSKD4]
          Length = 293

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/249 (46%), Positives = 170/249 (68%), Gaps = 5/249 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +IL +PQLGENIG  ARAM NF    LR+VNPRDGWPSEKAR++++ AD VID V+VF
Sbjct: 43  PAVILCEPQLGENIGTAARAMANFGWVDLRIVNPRDGWPSEKARAAASRADHVIDKVQVF 102

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+ AIADL F++ATTAR+R   K V +P EAA  + +   SG   G IFGRERWGL N
Sbjct: 103 DSLEAAIADLTFVFATTARSREVPKPVCSPDEAAQKVVQSGVSGLPTGYIFGRERWGLNN 162

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGEL 192
           EE+AL++ I++ PV+P F SLNI+QAVL+  +E  + +   +   +  +E + PA K ++
Sbjct: 163 EEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTATAGALPFRLDEELHPPAVKEDV 222

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS-- 250
           +   ++LE +L+E  +FRP E++  M+  L +IF + EL  +EV  LRG+++ L++    
Sbjct: 223 VRLFEHLESALDEVTFFRPPERRPHMVRTLRNIFQKAELTEQEVRALRGVIAALERRETR 282

Query: 251 -RQSSRRNN 258
            R+S + +N
Sbjct: 283 PRRSDKDDN 291


>gi|209964300|ref|YP_002297215.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
           centenum SW]
 gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
           centenum SW]
          Length = 266

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/247 (46%), Positives = 164/247 (66%), Gaps = 1/247 (0%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N+  GPV+ILV+PQ+GENIG  ARAM N  LT+LRLVNPRDGWP+EKA ++SA A  V+D
Sbjct: 18  NAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAVAASAGATEVLD 77

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             RVF+  +EAIADLH +YAT AR R+  K ++ P+ AA  L+  + +G+ VGI+FG ER
Sbjct: 78  RARVFTGTREAIADLHKVYATAARVRDMVKDIVTPRRAARDLHAHVAAGRRVGILFGPER 137

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPAT 188
            GL N++I LS+ +IS P+NP F SLN++QAVLL+ +E  ME +          Q+ PAT
Sbjct: 138 TGLVNDDIVLSDTMISVPLNPGFSSLNLAQAVLLVAYEWWMEAAQAEEFYTHTGQSPPAT 197

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K EL +  D+LE  L++ G++   +KK  M+ ++ +   R  +  +EV    GI++ L  
Sbjct: 198 KEELHNLFDHLEGELDQTGFYTHPDKKPSMVRNVRNTLQRAHMTEQEVRTFHGIIAALVG 257

Query: 249 FSRQSSR 255
             +Q +R
Sbjct: 258 RKKQRAR 264


>gi|306840340|ref|ZP_07473111.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
 gi|306289687|gb|EFM60879.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
          Length = 253

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 164/232 (70%), Gaps = 2/232 (0%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+  V+ +L  AIADL+
Sbjct: 3   ENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYGDLPSAIADLN 62

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
           F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+GL+NEE+ L++ +++
Sbjct: 63  FVYATTARERDGFKPVRSAIEAGNALRRRFKTGEKTGILFGRERFGLSNEEVGLADELVT 122

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTP-ATKGELLSFLDYLEISL 203
           FPVNP F SLNI+QAVLLM +E M++ + +    V +    P A K EL  F ++LE +L
Sbjct: 123 FPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPKEELHGFFNHLEEAL 182

Query: 204 EERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
           + RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F+ +  R
Sbjct: 183 DVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVFTPKKPR 234


>gi|154253023|ref|YP_001413847.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum
           lavamentivorans DS-1]
          Length = 262

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/236 (47%), Positives = 157/236 (66%), Gaps = 1/236 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP +ILV PQLGENIG  ARAM NF LT LRLV PRDGWP+E+AR++++ AD VID  R+
Sbjct: 17  GPAVILVAPQLGENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEVIDGARL 76

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F+   EAIADL ++ ATTAR+R+  K +L P+ AA  +     +G   G++FG ER GL 
Sbjct: 77  FATTAEAIADLDYVIATTARSRDMVKPILTPETAATQMRVAFGAGGRAGLLFGPERTGLE 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGEL 192
           N++I L++A++  PVNP F SLN++Q VLLM +E  +    +    ++  Q  PATK EL
Sbjct: 137 NDDIVLADALMMVPVNPAFASLNLAQCVLLMSYEWHKAGDATEAARIEYPQTRPATKEEL 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + F  +LE  L+  G+ +P EK+  M+ +L ++F R  L  +EV  LRG+V+ L +
Sbjct: 197 VGFFHHLEGELDRFGFLKPPEKRPSMIRNLRNMFQRAVLTEQEVRTLRGVVAALTR 252


>gi|86750840|ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gi|86573868|gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 398

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/248 (44%), Positives = 161/248 (64%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+  AR S++ AD ++D+V +
Sbjct: 17  GPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNVHARRSASGADHILDAVEL 76

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  + EA+AD   ++ATTAR  +  K V  P+ AA  +      G   GI+FGRER+GL 
Sbjct: 77  FETVGEAVADCTLLFATTARAHDQAKPVRGPEAAAQEMITAAVGGGTAGILFGRERYGLE 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192
           N E+AL+N I++FPVNP F SLN++QAVLLM +E  +++   +    + E++ PA++ ++
Sbjct: 137 NHEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPYAMPERSEPASQHQM 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F D L   L+   + RP EK+  ML +L +IF R +  R+++  L G V  + +  R+
Sbjct: 197 TAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMDPTRQDIHTLHGAVMAIAE-GRK 255

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 256 GPAKGGVL 263


>gi|146339760|ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146192566|emb|CAL76571.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 399

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 120/250 (48%), Positives = 171/250 (68%), Gaps = 6/250 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+  A+ ++A AD +ID VR+
Sbjct: 15  GPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHVRL 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L EAIADL  ++ATTAR+ +  K V+ P+ AA  +  +I SG   GI+FGRER GLT
Sbjct: 75  FETLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIASGGRAGILFGRERSGLT 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190
           NEE+A +N II++PVNP F SLN++QAVLLM +E  +  +V+S      + E++  AT+ 
Sbjct: 135 NEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFK--LVTSGALPFAMPERSERATQE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++ +F + L   L+   + RP EK++ ML +L +IF R E  ++++  L G+V  + +  
Sbjct: 193 QMEAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDMHTLHGVVMAIAE-G 251

Query: 251 RQSSRRNNVL 260
           R+   +  VL
Sbjct: 252 RKGPAKGGVL 261


>gi|148256718|ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146408891|gb|ABQ37397.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 399

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 118/248 (47%), Positives = 169/248 (68%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+  A+ ++A AD +ID VR+
Sbjct: 15  GPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHVRL 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F+ L EAIADL  ++ATTAR+ +  K V+ P+ AA  +  +I +G   GI+FGRER GLT
Sbjct: 75  FATLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIAAGGRAGILFGRERSGLT 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192
           NEE+A +N II++PVNP F SLN++QAVLLM +E  +     +    + E++  AT+ +L
Sbjct: 135 NEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTFGALPFTMPERSERATQEQL 194

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F + L   L+   + RP EK++ ML +L +IF R E  ++++  L G+V  + +  R+
Sbjct: 195 EAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDIHTLHGVVMAIAE-GRK 253

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 254 GPAKGGVL 261


>gi|90423088|ref|YP_531458.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB18]
 gi|90105102|gb|ABD87139.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB18]
          Length = 410

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 109/248 (43%), Positives = 168/248 (67%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF LT+LR+V PRDGWP+  AR +++ AD ++D+V +
Sbjct: 17  GPVVILVEPQLGENIGMCARAMGNFGLTRLRIVKPRDGWPNVHARRAASGADYILDAVEL 76

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  +++A+A    ++ATTAR  +  K V AP+EAA  +   +  G  VGI+FGRER+GL 
Sbjct: 77  FETVEQAVAGCSLLFATTARAHDQAKPVRAPEEAAREIFAEVGQGGEVGIMFGRERYGLE 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192
           N+E+AL+N I++FPVNP F SLN++QAVLLM +E  + +  ++    + E++  A++ ++
Sbjct: 137 NDEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFKLATANALPFAMPERSERASQHQM 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + +  R+
Sbjct: 197 QAFFDNLVGELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 255

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 256 GPAKGGVL 263


>gi|27380857|ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27354023|dbj|BAC51011.1| bll5746 [Bradyrhizobium japonicum USDA 110]
          Length = 398

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 170/252 (67%), Gaps = 4/252 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S  GP++ILV+PQLGENIGM ARAM NF L++LR+VNPRDGWP+  A+ ++A AD +++ 
Sbjct: 12  SLDGPIVILVEPQLGENIGMAARAMGNFALSRLRIVNPRDGWPNIAAQRAAAGADYILEK 71

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V +F  + EA+ADL  ++ATTAR  +  K V+ P+ AA  ++  + +G   GI+FGRERW
Sbjct: 72  VELFDTVGEAVADLDLLFATTARPHDQAKPVVGPEAAAAEISGHVATGGKAGILFGRERW 131

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPAT 188
           GLTNEE+ L+N II+FPVNP F SLN++QAVLL+ +E  + +  S E    + E++  A+
Sbjct: 132 GLTNEEVGLANRIITFPVNPGFASLNLAQAVLLIGYEWFKLA-TSGELPHAMPERSERAS 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + +
Sbjct: 191 QHQMQAFFDNLIRELDKVEFLRPAEKRDTMLVNLRNIFSRMEPTKQDMHTLHGVVMAIAE 250

Query: 249 FSRQSSRRNNVL 260
             R+   +  VL
Sbjct: 251 -GRKGPAKGGVL 261


>gi|218531400|ref|YP_002422216.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           chloromethanicum CM4]
 gi|218523703|gb|ACK84288.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           chloromethanicum CM4]
          Length = 245

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/240 (43%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  +V+
Sbjct: 4   PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EAIADLHF+ ATTAR R   K V AP++A     ERI  G+ VG++FGRER GL+N
Sbjct: 64  ATLPEAIADLHFLLATTARERGQMKRVFAPEDAMAATAERIGRGERVGLMFGRERVGLSN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193
           +E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+  +L
Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           S    LE +L   G++ P EK++ +  ++  +  R  +  ++V   RG +  L++ +R++
Sbjct: 184 SLFASLEETLAGAGFY-PPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242


>gi|240139894|ref|YP_002964371.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
 gi|240009868|gb|ACS41094.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
          Length = 245

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/240 (43%), Positives = 162/240 (67%), Gaps = 2/240 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  +V+
Sbjct: 4   PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EAIADLHF+ ATTAR R   K V AP++A     ERI  G+ +G++FGRER GL+N
Sbjct: 64  ATLPEAIADLHFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVGLSN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193
           +E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+  +L
Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           S    LE +L   G++ P EK++ +  ++  +  R  +  ++V   RG +  L++ +R++
Sbjct: 184 SLFASLEETLAGAGFY-PPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242


>gi|316932884|ref|YP_004107866.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
 gi|315600598|gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
          Length = 400

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 107/248 (43%), Positives = 163/248 (65%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A  +SA AD ++++V +
Sbjct: 17  GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAATRASAGADHILNAVEL 76

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F ++ +A+AD   ++ATTAR  +  K V  P+ AA  +   I +G   GI+FGRER GL 
Sbjct: 77  FDSVADAVADCALLFATTARAHDQAKPVRGPEAAAQEIVASIATGVTAGILFGRERHGLE 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192
           N+E+AL+N I++FPVNP F SLN++QAVLLM +E  +++   +    + E++ PA++ ++
Sbjct: 137 NDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPFAMPERSEPASQHQM 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F D L   L+   +  P EK+  ML +L +IF R +  ++++  L G +  + +  R+
Sbjct: 197 QAFFDNLVAELDRVEFLCPPEKRDTMLVNLRNIFTRMDPTKQDIHTLHGAIMAIAE-GRK 255

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 256 GPAKGGVL 263


>gi|163852560|ref|YP_001640603.1| RNA methyltransferase [Methylobacterium extorquens PA1]
 gi|163664165|gb|ABY31532.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           extorquens PA1]
          Length = 245

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 161/239 (67%), Gaps = 2/239 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  +V+
Sbjct: 4   PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EAIADLHF+ ATTAR R   K V AP++A     ERI  G+ +G++FGRER GL+N
Sbjct: 64  ATLPEAIADLHFLLATTARERGQMKRVFAPEDALTATAERIGRGERIGLMFGRERVGLSN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193
           +E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+  +L
Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           S    LE +L   G++ P EK++ +  ++  +  R  +  ++V   RG +  L++ +R+
Sbjct: 184 SLFASLEETLAGAGFY-PPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARK 241


>gi|192292727|ref|YP_001993332.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris TIE-1]
 gi|192286476|gb|ACF02857.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris TIE-1]
          Length = 399

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/248 (43%), Positives = 162/248 (65%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A+ S+A AD ++++V +
Sbjct: 17  GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNVAAQRSAAGADHILNAVEL 76

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F ++ EA+ D   ++ATTAR  +  K V  P+ AA  +     SG   GI+FGRER GL 
Sbjct: 77  FDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVAETASGGTTGIMFGRERHGLE 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192
           N+E+AL+N I++FPVNP F SLN++QAVLLM +E  +++  ++    + E++  A++ ++
Sbjct: 137 NDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSPRASQHQI 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F   L   L+   + RP EK+  ML +L +IF R E  ++++  L G+V  +    R+
Sbjct: 197 DAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMAIAD-GRK 255

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 256 GPAKGGVL 263


>gi|218682399|ref|ZP_03530000.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium etli CIAT
           894]
          Length = 225

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 146/206 (70%), Gaps = 2/206 (0%)

Query: 52  WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
           WP+EKA ++++ AD VI + +V+  L++A+ADL+F+YATTAR R+ +K V +P  AA  L
Sbjct: 1   WPNEKALATASKADHVIAATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETL 60

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +  +G+  GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++
Sbjct: 61  RAKFRAGEGTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKS 120

Query: 172 SI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
            +  V +        TP+TK +L    D LE +L+ RGYF P  KK KM+D+L ++  R 
Sbjct: 121 GMEDVGAVPFQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRR 180

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSR 255
               +E+ +LRG++S+LD+FSR+S R
Sbjct: 181 AFTEQEISVLRGVISSLDRFSRKSPR 206


>gi|254562318|ref|YP_003069413.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
 gi|254269596|emb|CAX25567.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
          Length = 245

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 161/240 (67%), Gaps = 2/240 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  +V+
Sbjct: 4   PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EAIADL F+ ATTAR R   K V AP++A     ERI  G+ +G++FGRER GL+N
Sbjct: 64  ATLPEAIADLQFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVGLSN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193
           +E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+  +L
Sbjct: 124 DEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATREAML 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           S    LE +L   G++ P EK++ +  ++  +  R  +  ++V   RG +  L++ +R++
Sbjct: 184 SLFASLEETLAGAGFY-PPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKARKT 242


>gi|39936894|ref|NP_949170.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|39650751|emb|CAE29274.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 404

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/248 (43%), Positives = 162/248 (65%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A+ S+A AD ++++V +
Sbjct: 22  GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAAQRSAAGADHILNAVEL 81

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F ++ EA+ D   ++ATTAR  +  K V  P+ AA  +     SG   GI+FGRER GL 
Sbjct: 82  FDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVVETASGGTTGIMFGRERHGLE 141

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192
           N+E+AL+N I++FPVNP F SLN++QAVLLM +E  +++  ++    + E++  A++ ++
Sbjct: 142 NDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSPRASQHQI 201

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F   L   L+   + RP EK+  ML +L +IF R E  ++++  L G+V  +    R+
Sbjct: 202 DAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMAIAD-GRK 260

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 261 GPAKGGVL 268


>gi|83592035|ref|YP_425787.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
           11170]
 gi|83574949|gb|ABC21500.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
           11170]
          Length = 279

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 104/233 (44%), Positives = 154/233 (66%), Gaps = 1/233 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+LV PQL ENIGMVARAM N  LT LRLV PR+ W +EKA +S++ AD ++   R F
Sbjct: 18  PAIVLVRPQLAENIGMVARAMLNCGLTALRLVAPREDWLAEKAIASASGADGLLREARFF 77

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              + AIAD++ +YATTAR R+  K VL P+ AA  L  ++ +G+   ++FG ER GL+N
Sbjct: 78  ETTEAAIADINRVYATTARRRDMIKRVLTPRGAAERLRTQVAAGERCAVMFGPERTGLSN 137

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELL 193
           +++AL++AI+  P+NP + SLN++QAVLL+ +E  +      +E+ V     PAT+GELL
Sbjct: 138 DDVALADAIVEVPLNPAYCSLNLAQAVLLLGYEWYQAGDATPAEQLVTNDTQPATRGELL 197

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            F D+LE  L++ G+ R   K+  M+ +L ++F R +L  +E+  L G+V  L
Sbjct: 198 GFFDHLERELDDCGFLRNAAKRPGMVRNLRNLFERADLTEQEIRTLHGVVKEL 250


>gi|288959273|ref|YP_003449614.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
 gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
          Length = 258

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 102/242 (42%), Positives = 155/242 (64%), Gaps = 1/242 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP +ILV PQLGENIG  ARAM N  LT LRLV PRDGWP+ KA ++++ AD VI++ R+
Sbjct: 15  GPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGADPVIENARI 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F    EA+ADL  ++ATT R R+  +  + P+ AA  + ER  +GQ +G++FG ER GL 
Sbjct: 75  FETTAEAVADLEAVFATTVRTRDMIQRFVTPRVAAGEMRERYAAGQKLGVMFGPERTGLV 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGEL 192
           N+++ L+  +++ P+NP F SLN++QAVLL+ +E  +    + ++ +   Q  PAT  E 
Sbjct: 135 NDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQTRPATMAER 194

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           ++F + LE +L+  G+F   EK+  M+  L + F R E+  +EV    G+V+ L + SR+
Sbjct: 195 VNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVAALVQGSRR 254

Query: 253 SS 254
             
Sbjct: 255 KG 256


>gi|209884583|ref|YP_002288440.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
           OM5]
 gi|209872779|gb|ACI92575.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
           OM5]
          Length = 391

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/250 (44%), Positives = 164/250 (65%), Gaps = 6/250 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A  ++A AD ++  V V
Sbjct: 15  GPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAERAAAGADHILTQVEV 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  ++ A+AD   ++ATTAR  +  K V+AP+ AA  +   +  G   GI+FGRERWGLT
Sbjct: 75  FETVEAAVADCALLFATTARAHDQAKPVVAPEAAAREIVTEVAQGATAGILFGRERWGLT 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190
           NEE++L+  I++FPVNP F SLN++QAVLLM +E  +  + S  +   ++ E++  A++ 
Sbjct: 135 NEEVSLATRIVTFPVNPGFASLNLAQAVLLMGYEWFK--LASGGEIPFSMPERSERASQH 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++ +F   L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  L +  
Sbjct: 193 QMEAFFTNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPTKQDMHTLHGVVMALAE-G 251

Query: 251 RQSSRRNNVL 260
           R+   +  VL
Sbjct: 252 RKGPAKGGVL 261


>gi|220924676|ref|YP_002499978.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           nodulans ORS 2060]
 gi|219949283|gb|ACL59675.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           nodulans ORS 2060]
          Length = 248

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 155/233 (66%), Gaps = 2/233 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVIILV+PQL ENIGM ARAM NF L++LRLV P+ GWP +  R +++ A  V+D   + 
Sbjct: 9   PVIILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGATIH 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + EAI DLH + ATTAR R   K V+ P  A   +  R+ +G+ VGI+FGRER GL+N
Sbjct: 69  ATVAEAIGDLHHVLATTARERGQMKRVMGPDAAMQAVVGRLSAGERVGILFGRERVGLSN 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193
           +E++L++AI++FPV+P  PSLN++Q+VLL+ +E    + +++     E ++ PA++  LL
Sbjct: 129 DEVSLADAIVTFPVDPKHPSLNLAQSVLLVAYEWRRAAGLAALPFDGELRSPPASREALL 188

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +  + LE +L+  GYF P EK+  M+ +L  I  R  +  ++V  LRG++  L
Sbjct: 189 ALFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDVRSLRGVLRAL 240


>gi|188582582|ref|YP_001926027.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           populi BJ001]
 gi|179346080|gb|ACB81492.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           populi BJ001]
          Length = 245

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/235 (43%), Positives = 155/235 (65%), Gaps = 2/235 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  +VF
Sbjct: 4   PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDRAKVF 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+ DLH + ATTAR R   K V AP+EA     +RI  G+ VG++FGRER GL+N
Sbjct: 64  ATLAEAVGDLHGLLATTARERGQMKRVFAPEEAMTATADRIGRGERVGLMFGRERVGLSN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193
           +E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+  LL
Sbjct: 124 DEVSLADAIVTFPVTEEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGELLSPPATREALL 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           S    LE +L   G++ P EK++ +  ++  +  R  +  ++V   RG +  L +
Sbjct: 184 SLFASLEETLAGAGFY-PPEKREIIARNMRDMLHRMAMTEQDVRTFRGALRALHR 237


>gi|115523621|ref|YP_780532.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115517568|gb|ABJ05552.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris BisA53]
          Length = 397

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 110/248 (44%), Positives = 169/248 (68%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A+ S+A AD ++D+  +
Sbjct: 17  GPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNLHAQRSAAGADYILDAAVL 76

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F ++++A+ D   ++A+TAR  +  K V+AP+ AA  +   I  G NVGI+FGRER+GL 
Sbjct: 77  FDSVEDAVKDCSLLFASTARAHDQAKPVVAPEAAAAEMTAEIAGGGNVGILFGRERYGLE 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192
           N+E+AL+N II+FPVNP F SLN++QAVLL+ +E  +++  ++    + E++  A++ ++
Sbjct: 137 NQEVALANRIITFPVNPAFASLNLAQAVLLVGYEWFKHATQNALPFAMPERSERASQHQM 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G V  + +  R+
Sbjct: 197 QAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFSRMEPTKQDMHTLHGAVMAIAE-GRK 255

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 256 GPAKGGVL 263


>gi|300023629|ref|YP_003756240.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525450|gb|ADJ23919.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 430

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 113/244 (46%), Positives = 157/244 (64%), Gaps = 12/244 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +IL++PQL +NIGMVARA  NF L  LRLVNPRDGWP+EKAR +++ A+ VID  R F
Sbjct: 172 PSVILMEPQLADNIGMVARACANFGLDDLRLVNPRDGWPNEKARIAASGANYVIDDARPF 231

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+++IADL++I ATTAR R+  K VL P++A      RI  G+  GI+FGRER GL  
Sbjct: 232 EKLEDSIADLNWIAATTARQRDMRKPVLTPEQAIAEARARIARGERCGILFGRERNGLET 291

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-------IVSSEKNVKE----- 182
            E+A ++A+I  PVN  F SLN++QAVLL+ +E M +        + + EK + E     
Sbjct: 292 GEVANADALIMIPVNSRFASLNLAQAVLLLGYEWMRSDAGRSLGRVTTYEKPLNEGLYMG 351

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           ++ PATK EL+   ++LE  LE  G+F P  +K  +  +L ++  R     +EV  LRGI
Sbjct: 352 RDRPATKEELIGLFEHLERELEANGFFNPAHRKTVVSQNLRTLLTRMNATEQEVRTLRGI 411

Query: 243 VSTL 246
           V+TL
Sbjct: 412 VATL 415


>gi|299131733|ref|ZP_07024928.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2]
 gi|298591870|gb|EFI52070.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2]
          Length = 393

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 111/250 (44%), Positives = 165/250 (66%), Gaps = 6/250 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A+ ++A AD +++ V +
Sbjct: 15  GPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAQRAAAGADHILERVEL 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  ++ A+AD   ++ATTAR  +  K V+AP  AA  + E        GI+FGRER GLT
Sbjct: 75  FETVEAAVADCALLFATTARAHDQAKPVVAPDAAAREIVEGTAQDITAGILFGRERSGLT 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190
           NEE+AL+N I++FPVNP F SLN++QAVLLM +E  +  + S      ++ E++ PA++ 
Sbjct: 135 NEEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFK--LASGGMIPFSMPERSEPASQH 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + +  
Sbjct: 193 QMQAFFDNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPSKQDMHTLHGVVMAIAE-G 251

Query: 251 RQSSRRNNVL 260
           R+   +  VL
Sbjct: 252 RKGPAKGGVL 261


>gi|154248490|ref|YP_001419448.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154162575|gb|ABS69791.1| RNA methyltransferase, TrmH family, group 1 [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/262 (40%), Positives = 162/262 (61%), Gaps = 6/262 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A GPV+ILV+PQLG+NIG  ARAM NF L++LR+VNPR+GWPSE AR  SA AD ++   
Sbjct: 14  AGGPVVILVEPQLGQNIGSAARAMGNFGLSRLRIVNPREGWPSEPARIFSAGADRILAEA 73

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++ +L+ A+  +++ +A TAR R   K VL     A     R+  G++V ++FGRER G
Sbjct: 74  VLYPDLRSALVGVNYAFAATARERGMAKPVLGADAVAQEARSRLAGGEDVALVFGRERTG 133

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190
           L  EE++L +AI++ PVNP F SLN++  V +  +E  +     +        +P A KG
Sbjct: 134 LYTEEVSLCDAILTLPVNPAFASLNLAMCVAVTGYEWFKAETGGALPFAPPDRSPLADKG 193

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD--- 247
           +LL+F D+LE +LE+ G+FR  EK    + +L +IF R  L R+++  L G V+ L+   
Sbjct: 194 DLLAFFDHLEGALEQSGFFRSPEKAPSTIRNLRNIFHRLGLTRQDLATLHGAVTALEEGR 253

Query: 248 --KFSRQSSRRNNVLLQKTEKS 267
             + +R++ R  +  + K+ K+
Sbjct: 254 AGRDARKTIRIADAAIHKSRKA 275


>gi|298292134|ref|YP_003694073.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
           506]
 gi|296928645|gb|ADH89454.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
           506]
          Length = 282

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/256 (41%), Positives = 160/256 (62%), Gaps = 1/256 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV++LV+PQLGENIG   RAM NF L++LRLVNPR+GWP+ KA + ++ AD ++++  V
Sbjct: 16  GPVVVLVEPQLGENIGSAVRAMGNFGLSRLRLVNPREGWPNPKAVTFASGADRILENAEV 75

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+ A+ADL+F+ A TAR R   K+VL     A     RI  G+NVG++FGRER GL 
Sbjct: 76  FPDLRAALADLNFVAAATARERGMQKTVLGADAVATEAVARIAGGENVGLVFGRERTGLY 135

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGEL 192
            EE++L++ I++ PVNP F SLN+  AV ++ +E  + +   +    +    P A K +L
Sbjct: 136 TEEVSLADVILTLPVNPAFASLNLGMAVAVVAYEWFKLASGGALPFQQPDRYPIADKADL 195

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           L+F D++E  L+E  +FR  EKK   + ++ +IF R  L R+++  L G+V+ L +  R 
Sbjct: 196 LAFFDHVEKELDEALFFRSPEKKPVTIRNIRNIFHRVGLTRQDIATLHGMVAALVEGRRT 255

Query: 253 SSRRNNVLLQKTEKSE 268
              R    L    K +
Sbjct: 256 REERTAARLSGKPKEK 271


>gi|197104457|ref|YP_002129834.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
 gi|196477877|gb|ACG77405.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 261

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 147/238 (61%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S   PVIIL  PQL ENIG VAR M NF L+ LRLVNPRDGWP E+A +S++ AD  +++
Sbjct: 5   SYPAPVIILNTPQLAENIGAVARVMANFGLSDLRLVNPRDGWPLERAWASASGADWPLNA 64

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV+ ++  AIADL  IYATTAR R     VL P+ AA  L+    +GQ VG++FG ER 
Sbjct: 65  ARVYDSVAAAIADLQLIYATTARPRELQLPVLTPRRAAGDLHAAAAAGQRVGLLFGGERA 124

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL  ++IAL  A+++ P++P F SLN++QAV +  +E    +      N +E   PAT  
Sbjct: 125 GLETQDIALCQAVVTIPIDPRFRSLNLAQAVAINAYEWRATAADRPPPNFREGPPPATGE 184

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            LL F ++LE  LE  G+F P EK   M+ +L S   R     +EV  LRG+V+ L +
Sbjct: 185 ALLGFYEHLERELETAGFFHPPEKTPNMIQNLRSALGRARFTDQEVRTLRGVVTALSR 242


>gi|296448617|ref|ZP_06890486.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium
           OB3b]
 gi|296253867|gb|EFH01025.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium
           OB3b]
          Length = 275

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 161/255 (63%), Gaps = 11/255 (4%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSANADCV 67
           GP I+LV PQL  NIGM ARAM NF L+ LRLV PR+GWP+      E + S++A A  +
Sbjct: 16  GPTIVLVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPTRDPVYREASYSAAAGAAFL 75

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +DS +++   +EAIADL F+YA TAR R   K V  P  A      RI +G+  G+IFG 
Sbjct: 76  LDSAKLYETAREAIADLTFVYAATARERGQMKPVTTPAAALPQTVARIAAGERHGVIFGP 135

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTP 186
           ER GL N+E+AL+++I++FPVNP + SLN++QAVLL  +E    +   +   +  E++ P
Sbjct: 136 ERTGLDNDEVALADSILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDAIPFDNSERSPP 195

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT+   LSF D+LE  L+ER +FRP  KK  M  +L ++F R  L  ++V  LRG+V  L
Sbjct: 196 ATREMTLSFFDFLERELDERQFFRPETKKPVMSRNLRNMFHRMGLTEQDVRTLRGMVVRL 255

Query: 247 DKFSR----QSSRRN 257
            +  R    ++SRRN
Sbjct: 256 IEGPRREPKKASRRN 270


>gi|158423491|ref|YP_001524783.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158330380|dbj|BAF87865.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 289

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/236 (42%), Positives = 155/236 (65%), Gaps = 1/236 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A GPV+ILV+PQLGEN+G  ARAM NF L++LR+VNPR+GWP+EKAR   A AD ++D  
Sbjct: 14  AGGPVVILVEPQLGENVGSAARAMGNFGLSRLRVVNPREGWPNEKARIFCAGADRILDDA 73

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++F +L+ A+AD+ +  ATTAR R   K V      A     R+ +G++V ++FGRER G
Sbjct: 74  QLFPDLRSALADVSYAVATTARERGMAKPVNGADVVAQDAVVRLKAGEDVALVFGRERTG 133

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKG 190
           L  EE++L ++I++ PVNP F SLN++ AV +  +E  + +  ++   V  E++ PA + 
Sbjct: 134 LYTEEVSLCDSILTLPVNPAFASLNLATAVAVTAYEWSKAATGNALPFVMPERSPPADRV 193

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +L +F D+LE  LEE  +FR  EK      ++ +IF R EL ++++  L G+++ L
Sbjct: 194 DLFAFFDHLERELEEAAFFRSPEKAPSTTRNIRNIFHRCELTKQDLATLHGMITAL 249


>gi|312113941|ref|YP_004011537.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219070|gb|ADP70438.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
          Length = 263

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 109/258 (42%), Positives = 165/258 (63%), Gaps = 13/258 (5%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S   P IILV+PQLGENIG  ARAM NF L +LRLV PRDGWP+E AR+S+A A  ++D 
Sbjct: 6   SPSAPAIILVEPQLGENIGAAARAMANFGLRELRLVAPRDGWPNEAARASAALAVEIVDG 65

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            R++ +L  A+ADLH+I ATTAR+R   K VLAP  A   + ER  +    G++FG+ER 
Sbjct: 66  ARLYPDLATAVADLHYIVATTARSRFLAKPVLAPDTAVTEIAERQAADLRCGVLFGKERT 125

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE------------CMENSIVSSEK 178
           GL N ++A+++AI++ PV+P F SLN++Q+VLL  +E             + ++ + +  
Sbjct: 126 GLENSDVAIADAIMTAPVDPAFASLNLAQSVLLFAYEWRKLVNPHSLGRTLPDAPLGAGH 185

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
             K  + PA +GEL++F ++LE  L+  G+  P EK++ M++++ ++F R     +EV  
Sbjct: 186 RFK-ASRPAERGELIAFYEHLEGELDHCGFLFPPEKRETMVNNIRTMFARMAPTEQEVRT 244

Query: 239 LRGIVSTLDKFSRQSSRR 256
           LRG+V+ L +   Q S +
Sbjct: 245 LRGMVAILRRGPWQGSNK 262


>gi|91976216|ref|YP_568875.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB5]
 gi|91682672|gb|ABE38974.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB5]
          Length = 397

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 108/248 (43%), Positives = 161/248 (64%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+  A+ ++A AD +++   +
Sbjct: 17  GPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNIAAQRAAAGADDILEQAEL 76

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  ++EA+AD   ++ATTAR  +  K V  P+ AA  +      G   GI+FGRER+GL 
Sbjct: 77  FDTVREAVADCTLLFATTARAHDQAKPVRGPEAAAQEIVTATAGGATAGILFGRERYGLQ 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGEL 192
           NEE+AL+N I++FPVNP F SLN++QAVLLM +E  +++   +    + E++ PA++ ++
Sbjct: 137 NEEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQGALPFAMPERSEPASQHQM 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F D L   L+   + RP EK+  ML +L +IF R E  ++++  L G V  + +  R+
Sbjct: 197 TAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGAVMAIAE-GRK 255

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 256 GPAKGGVL 263


>gi|170740850|ref|YP_001769505.1| RNA methyltransferase [Methylobacterium sp. 4-46]
 gi|168195124|gb|ACA17071.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium sp.
           4-46]
          Length = 250

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 151/235 (64%), Gaps = 2/235 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +ILV+PQL ENIGM ARAM NF L++LRLV P+ GWP +  R +++ A  V+D   + 
Sbjct: 8   PAVILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGATIH 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + EAI DLH + ATTAR R   K V+ P EA   +  R  +G+ VGI+FGRER GL+N
Sbjct: 68  ATVAEAIGDLHHVLATTARERGQMKRVMGPDEAMGSVVARQAAGERVGILFGRERVGLSN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193
           +E++L++AI++FPV+P   SLN++Q+VLL+ +E    S +++     E ++ PA +  LL
Sbjct: 128 DEVSLADAIVTFPVDPRHASLNLAQSVLLVAYEWRRASGLATLPFDGEMRSPPAPREALL 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           S  + LE +L+  GYF P EK+  M+ +L  I  R  +  +++  L G +  L +
Sbjct: 188 SLFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDLRSLHGALRALTR 241


>gi|254464114|ref|ZP_05077525.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
           bacterium Y4I]
 gi|206685022|gb|EDZ45504.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
           bacterium Y4I]
          Length = 250

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 153/242 (63%), Gaps = 2/242 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + S+ A  ++D  ++ 
Sbjct: 8   PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLC 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +++ EA+ D  +++ATTAR R   K V +P+ A  +  E+I +G+ V ++FG ER GL N
Sbjct: 68  ADVPEALGDCTYVFATTARQRGLTKPVYSPERAMQIAAEKIAAGEKVAVMFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGEL 192
           E+IA +NAIIS PVNPL+ SLN+ Q VLL  +E M  S  +V    ++  +   AT  E+
Sbjct: 128 EDIAKANAIISVPVNPLYASLNLGQCVLLTGYEWMRQSGDVVHETTDLGRKGDWATGVEV 187

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
              +++ E  L+E G+F P EK + M  +L +++ R  + R +V +L GI+  + ++  +
Sbjct: 188 EKLVEHYEERLDEAGFFYPPEKAEGMKTNLRNLWSRMRMTRSDVQMLHGIMRQMVRWKER 247

Query: 253 SS 254
             
Sbjct: 248 GG 249


>gi|119386406|ref|YP_917461.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
 gi|119377001|gb|ABL71765.1| RNA methyltransferase, TrmH family, group 1 [Paracoccus
           denitrificans PD1222]
          Length = 246

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/236 (44%), Positives = 144/236 (61%), Gaps = 4/236 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRV 73
           P IIL+ PQ+GENIG  ARAM NF LT +RLV PRDGWP+ +A + +S  A  V+D  RV
Sbjct: 7   PAIILMRPQMGENIGAAARAMLNFGLTDMRLVAPRDGWPNPRAVAMASGAAGRVLDRARV 66

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F+ L EA+AD+ + YATTAR R   K VL P  A     +R+  G  V +IFG ER GL 
Sbjct: 67  FATLAEAMADVDYAYATTARGRELTKPVLTPATAMADARDRVAQGGRVAVIFGPERAGLE 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKG 190
           NE++A +NAII+ PVNP FPSLN++QAVLL  +E  ++S+    +      +   PAT+ 
Sbjct: 127 NEDVARANAIITVPVNPDFPSLNLAQAVLLTGYEWAQDSLPPQPAPHGRRPDGEAPATRL 186

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           E+    D+ E  L E G+F P EK   M   L +++ R  L R +  +  G++  L
Sbjct: 187 EIEKLADHWEERLAEAGFFFPPEKAPAMKLTLRNLWSRLPLTRADTRIFHGMLRQL 242


>gi|182678308|ref|YP_001832454.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634191|gb|ACB94965.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 271

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/244 (45%), Positives = 156/244 (63%), Gaps = 6/244 (2%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-----KARSSSAN 63
           +N A GP IILV PQL  NIGM ARAM NF L+ LRLV PR+GWP E     +A +++A 
Sbjct: 11  ENVAGGPAIILVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPREGRFKDEAEAAAAG 70

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++ S ++++ L EA+ADL+FI+ATTAR R   K V  P +A      R+  G+  GI
Sbjct: 71  AVHLLASAKLYATLPEAVADLNFIWATTARERGQCKRVATPAQAMPENAARLALGERQGI 130

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKE 182
           +FG ER GL N++IAL++AI++FPVNP + SLN++QAVLL  +E  + +    +   + +
Sbjct: 131 LFGPERTGLANDDIALADAILTFPVNPAYASLNLAQAVLLTGYEWFQAAHNAEAPFQLAD 190

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            + PA +  +LSF DYLE  L+  G+FRP  K   M  +L +IF R  L  ++V  LRG+
Sbjct: 191 YSPPAPREMILSFFDYLEGELDRSGFFRPAGKAPVMRRNLRNIFHRMHLSEQDVRTLRGM 250

Query: 243 VSTL 246
           V  L
Sbjct: 251 VVRL 254


>gi|323138521|ref|ZP_08073589.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
 gi|322396155|gb|EFX98688.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
          Length = 289

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 105/251 (41%), Positives = 161/251 (64%), Gaps = 10/251 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68
           GP IILV PQL  NIGM ARAM NF L+ LRLV+PR+GWP      + A +++A A  ++
Sbjct: 16  GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGAYRKGAYAAAAGATHLL 75

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +++ +++EAI DL F+YA TAR R   K V  P +A      R  +G+  G++FG E
Sbjct: 76  EGAKLYDSVREAIEDLSFVYAATARGRGQMKPVHTPAQALPTTAARHAAGERHGVLFGPE 135

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNT 185
           R GL N+++AL++AI++FPVNP + SLN++QAVLL  +E        ++  E  ++E++ 
Sbjct: 136 RTGLDNDDVALADAILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDVIPFE--IEERSP 193

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT+   L+F D+LE  L++RG+FRP+ KK  M  +L ++F R  L  ++V  L G+V  
Sbjct: 194 PATREMTLAFFDFLENELDKRGFFRPLTKKPVMSRNLRNMFHRMSLTEQDVRTLWGVVVR 253

Query: 246 LDKFSRQSSRR 256
           L +  R+  ++
Sbjct: 254 LVEGPRRDPKK 264


>gi|170752133|ref|YP_001758393.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
 gi|170658655|gb|ACB27710.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 261

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 152/235 (64%), Gaps = 4/235 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +ILV+PQL ENIGM ARAM NF L++LRLVNP++GWP +  R +++ A  V+D+  ++
Sbjct: 27  PAVILVEPQLAENIGMTARAMANFGLSELRLVNPKNGWPKKGVREAASGATHVLDAAAIY 86

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ EAIAD  ++ ATTAR R   K V AP+EA   L  R   GQ   ++FGRER GLTN
Sbjct: 87  GSVAEAIADCQYVLATTARERGQMKRVFAPEEAMGELVAR--EGQRTAVMFGRERVGLTN 144

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193
           +E++L++AI++FPV+P FPSLN++QAVLL+ +   + S  +      E  + PAT+  L+
Sbjct: 145 DEVSLADAIVTFPVSPDFPSLNLAQAVLLVGYAWRQASGRARLPFTGELLSPPATREALI 204

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +    LE +L+  G++ P EKK+ +  ++  +  R  L  ++V   RG +  L +
Sbjct: 205 ALFGSLEAALDGAGFY-PPEKKEIIARNMRDMLHRMSLTEQDVRTFRGALRALTR 258


>gi|330993326|ref|ZP_08317261.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329759356|gb|EGG75865.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 266

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 3/244 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV PQ+ ENIG  ARAM N  L  +R+V PRDGWP E+A  S++ AD +++S +VF
Sbjct: 17  PVVILVRPQMAENIGTTARAMANGGLFHMRIVAPRDGWPQERAWRSASGADRILESAQVF 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +A+ADLH ++AT  R R+  K VL  +  A  L E    G  VG++FG ER GL N
Sbjct: 77  DTVDDAVADLHHVFATCPRPRHIVKPVLTARGGAAELREMTGRGLKVGLMFGPERAGLDN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELL 193
           E++A ++A+I +P+NP F SLN++QAV++M +E  M          +  +   AT+GEL 
Sbjct: 137 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTEDETPPRALMTNETHVATRGELE 196

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF--SR 251
           +F+ +L   L++ G+ R  +K+  M+ +L   F+R E+  +E+  L G+V+ L +   +R
Sbjct: 197 NFMHHLITDLDDCGFLRNEQKRAGMVRNLRHFFLRGEVTEQELRTLHGVVTELSRGRKAR 256

Query: 252 QSSR 255
           Q++R
Sbjct: 257 QAAR 260


>gi|221235541|ref|YP_002517978.1| SpoU family methyltransferase [Caulobacter crescentus NA1000]
 gi|220964714|gb|ACL96070.1| rRNA methylase, SpoU family [Caulobacter crescentus NA1000]
          Length = 263

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 153/258 (59%), Gaps = 13/258 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A   +D  +VF
Sbjct: 11  PCVILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVF 70

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+ AIADL  +YATTAR R     +  P+E+A  L E +  G+ VG++FG ER GL  
Sbjct: 71  DTLEAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLET 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
           ++IAL  AI+S P++  F SLN++QAV +  +E      +      E+NV+E   PA + 
Sbjct: 131 DDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEE---PADQA 187

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            LL    +LE  LE+ G++ P EKK  M+ +L +   R  L  +EV   RG+++ L K  
Sbjct: 188 ALLGLYGHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSKG- 246

Query: 251 RQSSRRNNVLLQKTEKSE 268
                R  VL +  EK++
Sbjct: 247 -----RGRVLAKLAEKAK 259


>gi|56552099|ref|YP_162938.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241762049|ref|ZP_04760133.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752372|ref|YP_003225265.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56543673|gb|AAV89827.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373515|gb|EER63102.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551735|gb|ACV74681.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 243

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 4/234 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P IILV PQLGENIG  ARAM NF L  LRLV PRDGWP+  A  +++ AD V+   RVF
Sbjct: 6   PAIILVRPQLGENIGKAARAMLNFGLDDLRLVAPRDGWPNPSAGPAASGADRVLQQARVF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EA+AD   +YATT R R   K V+ P++AA  ++E+      VGI+FG ER GL  
Sbjct: 66  PTVAEAVADCAHVYATTVRKRGVTKPVMTPEQAAQTIHEQ---EGGVGILFGPERAGLET 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +++AL+  II+ PVNP F SLN++QAV+L+ +E  +   ++    V +   PA + EL +
Sbjct: 123 DDVALARTIITVPVNPEFSSLNLAQAVILVAYEWSKGQTLAQPTKV-DMEPPAPQEELEA 181

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            + +LE  L++ GYF P+ +   +   L ++  +P     E+  LRG++STL+K
Sbjct: 182 MIGHLENMLDKNGYFFPIPRIPTIKRTLRTLLTKPSWNSMEIRTLRGVLSTLEK 235


>gi|258543648|ref|YP_003189081.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634726|dbj|BAI00702.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637782|dbj|BAI03751.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640836|dbj|BAI06798.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643891|dbj|BAI09846.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646946|dbj|BAI12894.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649999|dbj|BAI15940.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652989|dbj|BAI18923.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656043|dbj|BAI21970.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 256

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 3/241 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV PQ+ ENIG  ARAM N  L  LRLV+PRDGWP E+A  +S+ AD ++++  V 
Sbjct: 17  PVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRTSSGADRILEAATVH 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ +A+ADLH +YAT  R R+  K VL  +  A  L      G  VG++FG ER GL N
Sbjct: 77  ESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMFGPERAGLDN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192
           E++A ++A+I +P+NP F SLN++QAV++M   W   E+     E    E +  ATKGEL
Sbjct: 137 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPRELMTNETHV-ATKGEL 195

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +FL +LE  L++ G+ R  +K+  M+ +L   F R E+  +E+  L G+V  L    R+
Sbjct: 196 ENFLQHLERELDDCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVRELAHPRRK 255

Query: 253 S 253
            
Sbjct: 256 D 256


>gi|167647484|ref|YP_001685147.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349914|gb|ABZ72649.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 266

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 145/238 (60%), Gaps = 7/238 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +IL +PQ+ ENIG VAR M NF L  LRLV PRDGWP E+A  S++ A   +D+ +VF
Sbjct: 8   PCVILNNPQMAENIGAVARVMANFGLEDLRLVKPRDGWPQERAWPSASGATWPLDNAKVF 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+EAIADL  ++ATTAR R     V+ P+EAA  L++ +  G  VG++FG ER GL  
Sbjct: 68  DTLEEAIADLKLVFATTARPRETRLPVVTPREAAAQLSDEVGRGHAVGLLFGGERAGLET 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKG 190
           ++IAL  AIIS P++  F SLN++QAV +  +E      +   V  E+NV+    PA + 
Sbjct: 128 DDIALCQAIISIPIDERFRSLNLAQAVSINAYEWKMTVDDRPWVKFEQNVE---PPADQS 184

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            LL     LE  LEE G++ P EKK  M+ +L +   R  L  +EV   RG+V+ L +
Sbjct: 185 SLLGLYAQLEEQLEEAGFYHPPEKKPSMVRNLRAPLARARLTEQEVRTFRGVVTALSR 242


>gi|149914927|ref|ZP_01903456.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
 gi|149811115|gb|EDM70952.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
          Length = 248

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 149/236 (63%), Gaps = 1/236 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++RLV PRDGWP+ KA + ++ A  ++D  ++ 
Sbjct: 8   PAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKAVAMASGAGRLLDEAQLT 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +++ EA+AD HF+ ATTAR R   K V +P+ A  V  ERI +G+ V ++FG ER GL N
Sbjct: 68  ADVAEAVADCHFVMATTARARGLTKPVFSPEHAMQVAAERIAAGERVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELL 193
           E+IA +NAII+ PVNP FPSLN++Q VLL  +E       ++ E+    +   A + E+ 
Sbjct: 128 EDIAKANAIINVPVNPDFPSLNLAQCVLLTGYEWRRAQGAITPERVDMARADWAEQIEIE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
              D+ E  L E G+F P  K + M  +L +++ R  L R +V +L G++  + ++
Sbjct: 188 KLADHYEARLSEAGFFFPEHKAEGMRLNLRNMWSRMPLTRADVQILHGVLRQMVRW 243


>gi|163746261|ref|ZP_02153619.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
           HEL-45]
 gi|161380146|gb|EDQ04557.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
           HEL-45]
          Length = 272

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/253 (41%), Positives = 152/253 (60%), Gaps = 3/253 (1%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           TP +P L   A  P I+LV PQ+GENIG  ARAMWNF L  +R+V PRDGWPS+ A + +
Sbjct: 22  TPSSPVL--PAPIPAIVLVRPQMGENIGAAARAMWNFGLDHMRVVAPRDGWPSQSAVAMA 79

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A  ++D  +  ++L  A+ D  F +ATTAR R+  K V +P+ A  +  E+I +GQ V
Sbjct: 80  SGAGRLLDEAQHSADLPSALGDCDFTFATTARGRDLTKPVYSPEAAMKLAAEKIAAGQRV 139

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            ++FG ER GL NE+IA +NAI+S PVNP F SLN++Q VLLM +E M      + +  +
Sbjct: 140 AVLFGPERAGLENEDIAQANAIVSVPVNPKFASLNLAQCVLLMSYEWMRAQGEVTHEVTE 199

Query: 182 EQNTPATKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
              T   KG E+     + E  LEE G+F P  K   M  +L +++ R  L R +V +L 
Sbjct: 200 MAGTDWAKGAEVDHLARHYEDRLEEAGFFYPEHKTASMKLNLRNMWSRMPLTRADVQMLH 259

Query: 241 GIVSTLDKFSRQS 253
           GI+  + ++  + 
Sbjct: 260 GILRQMVRWKEKG 272


>gi|329113815|ref|ZP_08242586.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
 gi|326696825|gb|EGE48495.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
          Length = 256

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 147/241 (60%), Gaps = 3/241 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV PQ+ ENIG  ARAM N  L  LRLV+PRDGWP E+A  +S+ AD ++++  V 
Sbjct: 17  PVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRASSGADRILEAATVH 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ +A+ADLH +YAT  R R+  K VL  +  A  L      G  VG++FG ER GL N
Sbjct: 77  ESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMFGPERAGLDN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192
           E++A ++A+I +P+NP F SLN++QAV++M   W   E+     E    E +  ATKGEL
Sbjct: 137 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPHELMTNETHV-ATKGEL 195

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +FL +LE  L+  G+ R  +K+  M+ +L   F R E+  +E+  L G+V  L    R+
Sbjct: 196 ENFLQHLERELDSCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVRELAHPRRK 255

Query: 253 S 253
            
Sbjct: 256 D 256


>gi|85715191|ref|ZP_01046175.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A]
 gi|85698106|gb|EAQ35979.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A]
          Length = 407

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/250 (43%), Positives = 169/250 (67%), Gaps = 6/250 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP +IL++PQLGENIGM ARAM NF LT+LR+VNPRDGWP+  A+ ++A AD ++  V +
Sbjct: 15  GPTVILIEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  + EA+AD   ++ATTAR  +  K V+AP+ AA+    +I +G +VGI+FGRER GL 
Sbjct: 75  FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190
           NEE+A+++ II++PVNP F SLN++QAVLLM +E  +  +V+  +    + E++  A++ 
Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFK--LVTRGELPFAMPERSERASQH 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + +  
Sbjct: 193 QMQAFFDNLVSELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-G 251

Query: 251 RQSSRRNNVL 260
           R+   +  VL
Sbjct: 252 RKGPAKGGVL 261


>gi|254511946|ref|ZP_05124013.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
 gi|221535657|gb|EEE38645.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
          Length = 247

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 151/240 (62%), Gaps = 1/240 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + S+ A  ++D  ++F
Sbjct: 8   PSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLF 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+AD  +++ATTAR R   K V +P++A  +  E++ +G+ V ++FG ER GL N
Sbjct: 68  DDLGRALADSTYVFATTARQRGLTKPVYSPEKAMQIAAEKVAAGEKVSVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELL 193
           E+IA +NAIIS PVNP + SLN+ Q VLL  +E M +   V  E     +   AT  E+ 
Sbjct: 128 EDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGEVVHEATDLGKGDWATGIEVE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
             +++ E  LEE G+F P EK + M  +L +++ R  + R +V +L G++  + ++  + 
Sbjct: 188 KLVEHYEDRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGVMRQMVRWKEKG 247


>gi|75675487|ref|YP_317908.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi
           Nb-255]
 gi|74420357|gb|ABA04556.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi
           Nb-255]
          Length = 403

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 109/250 (43%), Positives = 169/250 (67%), Gaps = 6/250 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+  A+ ++A AD ++  V +
Sbjct: 15  GPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  + EA+AD   ++ATTAR  +  K V+AP+ AA+    +I +G +VGI+FGRER GL 
Sbjct: 75  FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190
           NEE+A+++ II++PVNP F SLN++QAVLL+ +E  +  +V+  +    + E++  A++ 
Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLIGYEWFK--LVTRGELPFAMPERSERASQH 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + +  
Sbjct: 193 QMQAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-G 251

Query: 251 RQSSRRNNVL 260
           R+   +  VL
Sbjct: 252 RKGPAKGGVL 261


>gi|163793629|ref|ZP_02187604.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
 gi|159181431|gb|EDP65946.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
          Length = 264

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 147/240 (61%), Gaps = 1/240 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + ++  GP ++LV PQLG+NIG  ARAM N  L  +RLV PRDGWP+ +A + ++ A  V
Sbjct: 10  MADATVGPAVVLVQPQLGDNIGSCARAMLNCGLYDMRLVQPRDGWPNPRAIAMASGATAV 69

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  RVF    EA ADL+++ ATT R R+  K  L P+ AA+ L +R+  GQ VG++FG 
Sbjct: 70  LDRARVFETTAEACADLNYVLATTTRTRDMKKPALTPRTAALELRKRVALGQGVGLLFGP 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           ER GL NE++ L++A++S P+NP F SLN++QAVLL+ +E  +    +    + ++++P 
Sbjct: 130 ERAGLVNEDVTLADAVLSVPLNPGFSSLNLAQAVLLIGYEWYQAEDATPPLTMMDEDSPP 189

Query: 188 TKGELLS-FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
              +    F   LE  L+E G+F P      +  +L ++F R  +  +EV  L G++  L
Sbjct: 190 VTVKAREFFFTRLEALLDEAGFFYPDHLAPTIKRNLRTLFTRAGMSEQEVQTLHGVLKAL 249


>gi|92117174|ref|YP_576903.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14]
 gi|91800068|gb|ABE62443.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14]
          Length = 410

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 167/252 (66%), Gaps = 6/252 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+  A+ ++A AD ++  V
Sbjct: 13  AVGPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNVAAQRAAAGADHILKHV 72

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +F  ++ A+AD   + ATTAR  +  K V+AP+ AA     +I +G +VGI+FGRER G
Sbjct: 73  ELFDTVEAAVADCTLLLATTARAHDQAKPVVAPEAAAAEATVQIAAGGHVGILFGRERAG 132

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           L NEE+A+++ II++PVNP F SLN++QAVLLM +E  +  +V+       + E++  A+
Sbjct: 133 LLNEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFK--LVTRAALPFAMPERSERAS 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + +
Sbjct: 191 QHQMQAFFDNLVSELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE 250

Query: 249 FSRQSSRRNNVL 260
             R+   +  VL
Sbjct: 251 -GRKGPAKGGVL 261


>gi|16126759|ref|NP_421323.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|13424077|gb|AAK24491.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
          Length = 251

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/256 (41%), Positives = 152/256 (59%), Gaps = 13/256 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A   +D  +VF  
Sbjct: 1   MILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVFDT 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ AIADL  +YATTAR R     +  P+E+A  L E +  G+ VG++FG ER GL  ++
Sbjct: 61  LEAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLETDD 120

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKGEL 192
           IAL  AI+S P++  F SLN++QAV +  +E      +      E+NV+E   PA +  L
Sbjct: 121 IALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEE---PADQAAL 177

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           L    +LE  LE+ G++ P EKK  M+ +L +   R  L  +EV   RG+++ L K    
Sbjct: 178 LGLYGHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSKG--- 234

Query: 253 SSRRNNVLLQKTEKSE 268
              R  VL +  EK++
Sbjct: 235 ---RGRVLAKLAEKAK 247


>gi|295688613|ref|YP_003592306.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295430516|gb|ADG09688.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 268

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 106/252 (42%), Positives = 147/252 (58%), Gaps = 7/252 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MT   P        P +IL +PQL ENIG VAR M NF L  LRLV PRDGWP E+A +S
Sbjct: 1   MTDENPSASAQPAPPCVILNEPQLAENIGSVARVMANFGLYDLRLVRPRDGWPQERAWAS 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A+  +D  +VF +L+ AIADL  +YATTAR R     V  P+E+A  L E +  G+ 
Sbjct: 61  ASGANWPLDDAKVFDSLEAAIADLKLVYATTARPRETRLPVYTPRESAGHLAEEVAQGRK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSS 176
           VG++FG ER GL   +IAL  AI+S P++  F SLN++QAV +  +E      +      
Sbjct: 121 VGLLFGGERAGLETHDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWKKF 180

Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
           E NV+E   PA +  LL   ++LE  L++ G++ P EKK  M+ +L     R  L  +EV
Sbjct: 181 ELNVEE---PADQATLLGLYEHLEDELDKAGFYHPPEKKPSMVRNLRVPLARARLTDQEV 237

Query: 237 FLLRGIVSTLDK 248
              RG+++ L K
Sbjct: 238 RTFRGVITALSK 249


>gi|159044062|ref|YP_001532856.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
           12]
 gi|157911822|gb|ABV93255.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
           12]
          Length = 255

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/248 (39%), Positives = 151/248 (60%), Gaps = 1/248 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + ++   P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWPSEKA + ++ A  +
Sbjct: 5   MTDTPSQPAFVLVRPQMGENIGGSARAMWNFGLDRMRVVAPRDGWPSEKAVAMASGAGRL 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   ++ +  EA+AD  +++ATTAR R+  K V+ P+ A       I  GQ V ++FG 
Sbjct: 65  LDEAGLYGSTAEALADADYVFATTARPRDLTKPVVTPERAMEQARALIAEGQRVAVLFGP 124

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           ER GL NE+IAL+NAI+S PVNP FPSLN++Q VLL  +E    +  +  + ++   T  
Sbjct: 125 ERAGLENEDIALANAIVSVPVNPAFPSLNLAQCVLLTAYEWGRQTTDTPAEVMEMAGTRY 184

Query: 188 TKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             G E+ +  D+ E  +EE G+F P  K + M  ++ +++ R  L   +V  L G++  L
Sbjct: 185 ANGAEITALGDHFETRMEEAGFFFPDHKAESMKLNMRNMWSRLPLTLADVQTLHGVLRQL 244

Query: 247 DKFSRQSS 254
            ++  +S 
Sbjct: 245 VRWKDRSG 252


>gi|148554055|ref|YP_001261637.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
 gi|148499245|gb|ABQ67499.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
          Length = 253

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 8/239 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A  PVI+LV PQLGENIG  ARAM NF LT++RLV PRDGWP+ +A  +++ AD V++  
Sbjct: 17  APPPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVTPRDGWPNPQAGPAASGADIVLEGA 76

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRER 129
           RVF ++ EA AD   +YATT R R   K V+ P+EAA     R   G+     I+FG ER
Sbjct: 77  RVFDSVAEATADCAHVYATTVRKRGVTKPVMTPEEAA-----RGIHGEPGRSAILFGPER 131

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL  +++A++  I++ P+NP F SLN++QAV+L+ +E  +   ++S   V + + PA +
Sbjct: 132 SGLETDDVAVARTIVTVPINPEFGSLNLAQAVILVAYEWSKGIALASPPAV-DLDPPAPQ 190

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            EL   + +L+  L E GY+ P ++       L S+  +P    +EV  LRG++STL+K
Sbjct: 191 VELEGLIGHLDRLLAESGYYFPPDRVPATRRTLRSLLTKPAWNAQEVRTLRGVLSTLEK 249


>gi|304321241|ref|YP_003854884.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
           HTCC2503]
 gi|303300143|gb|ADM09742.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
           HTCC2503]
          Length = 293

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/249 (39%), Positives = 150/249 (60%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P++ILV PQLG+NIG  ARAM NF L  LRLV PRDGWP+  A++ +A A  V+D VRVF
Sbjct: 39  PLVILVRPQLGQNIGATARAMLNFGLKGLRLVAPRDGWPNADAKAMAAGAAEVLDGVRVF 98

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EA+AD H++ ATTAR+R  F  V  P + A  L  R    +   I+FG E+ GL  
Sbjct: 99  GTVAEAVADCHYVVATTARHRGVFLPVHTPVDTAGELRVRAARAERTAILFGAEKAGLET 158

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+A ++A+++ PVNP FPSLN++QAVL++ +E  + +  +       Q  PAT+ E   
Sbjct: 159 EEVAHAHALVTIPVNPAFPSLNLAQAVLVVAYEWAQAAGAAPLFTSPYQEDPATQAEREQ 218

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
              +L  +L+  GYF P  K++ +  +L ++    +L   E+ +L G+V   ++   + S
Sbjct: 219 LFTHLSTALDRAGYFYPSHKREVLSHNLRTLLANADLSPSELRVLHGVVRQFERHLPEKS 278

Query: 255 RRNNVLLQK 263
           + +  + Q+
Sbjct: 279 QTDKSVPQE 287


>gi|260433569|ref|ZP_05787540.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417397|gb|EEX10656.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 247

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 148/236 (62%), Gaps = 1/236 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + S+ A  ++D  ++F
Sbjct: 8   PSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLF 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+ D  +++ATTAR R   K V +P+ A  +  +++ +G+ V ++FG ER GL N
Sbjct: 68  DDLAGALGDRTYVFATTARQRGLTKPVYSPERAMQIAAQKVAAGEKVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELL 193
           E+IA +NAIIS PVNP + SLN+ Q VLL  +E M +   V  E     +   AT  E+ 
Sbjct: 128 EDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGDVVHEATDLGKGDWATGIEVE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             +++ E  LEE G+F P EK + M  +L +++ R  + R +V +L GI+  + ++
Sbjct: 188 KLVEHYEQRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGIMRQMVRW 243


>gi|114327801|ref|YP_744958.1| rRNA methylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315975|gb|ABI62035.1| RRNA methylase, SpoU family [Granulibacter bethesdensis CGDNIH1]
          Length = 257

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/242 (40%), Positives = 152/242 (62%), Gaps = 1/242 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           LQ     PVIILV PQL ENIG  ARAM N  L  LRLV+PRDGWP ++A  +++ AD +
Sbjct: 10  LQPRDPSPVIILVRPQLAENIGSTARAMANCGLFHLRLVSPRDGWPQDRAWRTASGADNI 69

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +DS+ V   +++A+ADLH ++AT  R R+  K+++  + AA  +      G   GI+FG 
Sbjct: 70  LDSLTVHETVEDAVADLHRVFATCPRPRHIVKTIMTARGAAADIVLACERGLKTGILFGP 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTP 186
           ER GL N+++A ++ ++ +P+NP F SLN+SQAV++M +E  M      S + +  ++  
Sbjct: 130 ERAGLDNDDMACADTLVRYPLNPDFMSLNVSQAVMVMGYEWWMAQDATPSRQLMTNESHV 189

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           ATKGEL +FL +L   L+E G+ R  +K+  M+ ++   F+R E+  +E+  L GIV  L
Sbjct: 190 ATKGELNNFLRHLVRELDECGFLRNEQKRSGMIRNIRHFFLRGEVTEQELRTLHGIVHEL 249

Query: 247 DK 248
            +
Sbjct: 250 SR 251


>gi|56696923|ref|YP_167285.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56678660|gb|AAV95326.1| RNA methyltransferase, TrmH family, group 1 [Ruegeria pomeroyi
           DSS-3]
          Length = 248

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 10/245 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ +A + S+ A  ++D  +++
Sbjct: 8   PAIVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNSRAVAMSSGAGRLLDEAQLY 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+ D  +++ATTAR R   K V +P+ A  +  E++ +G+ V ++FG ER GL N
Sbjct: 68  DDLPGALGDCTYVFATTARPREMTKPVYSPERAMQLAAEKLAAGEKVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           ++IA +NAII+ PVNP + SLN+ Q VLL+ +E M      +   V   + P  KGE  +
Sbjct: 128 DDIARANAIITVPVNPDYASLNLGQCVLLVAYEWMRQ----TGDVVHLSDAPGPKGEWAT 183

Query: 195 FL------DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L      ++ E  L+E G+F P EK + M  +L +++ R  L R +V +L GI+  + +
Sbjct: 184 GLEIEKLAEHYEQRLDEAGFFFPPEKAEGMQQNLRNLWSRMRLTRADVQMLHGIMRQMVR 243

Query: 249 FSRQS 253
           +  + 
Sbjct: 244 WKERG 248


>gi|58040206|ref|YP_192170.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
 gi|58002620|gb|AAW61514.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
          Length = 264

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 147/241 (60%), Gaps = 1/241 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV PQL ENIG  ARAM N  L  LR+V PRDGWP E+A  +S+ AD ++D+ +VF
Sbjct: 24  PVVILVRPQLAENIGTTARAMANGGLFHLRIVAPRDGWPQERAWYASSGADRILDAAQVF 83

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +A+ADLH I+AT  R R+  K V+  + AA  L      G   GI+FG ER GL N
Sbjct: 84  ETVDDAVADLHRIFATCPRPRHVIKPVMTARGAAAELRVASNRGLRTGILFGPERAGLDN 143

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           E++A ++ ++ +P+NP F SLN++QAVL+M +E      ++  + +    T  ATKGE+ 
Sbjct: 144 EDMARADTLVRYPLNPKFMSLNLAQAVLIMAYEWFLTEDMTPPRELMTNETHVATKGEMD 203

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +F+ +L   L+E  + R  +K+  M+ +L   F R E+  +E+  L G+VS L    R  
Sbjct: 204 NFMSHLIRDLDETNFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVSELSNARRNR 263

Query: 254 S 254
           S
Sbjct: 264 S 264


>gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 711

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 98/238 (41%), Positives = 147/238 (61%), Gaps = 1/238 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV PQ+ ENIG  ARAM N  L  LRLV PRDGWP E+A  S++ AD ++++  V 
Sbjct: 470 PVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAATVH 529

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ +AIADLH ++AT  R R+  K+VL  +  A  L +    G   G++FG ER GL N
Sbjct: 530 DSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGLDN 589

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELL 193
           E++A ++A+I +P+NP F SLN++QAV++M +E  M          +  +   ATKGEL 
Sbjct: 590 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGELD 649

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +F+ +L   L+E G+ R  +K+  M+ +L   F R E+  +E+  L G+V+ L +  R
Sbjct: 650 NFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRR 707


>gi|126726420|ref|ZP_01742261.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
 gi|126704283|gb|EBA03375.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
          Length = 256

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 3/236 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P IILV PQ+GENIG  ARAMWNF L ++R+V+PRDGWP+ KA + ++ A  V+D+V ++
Sbjct: 18  PSIILVRPQMGENIGAAARAMWNFGLERMRIVDPRDGWPNPKATAMASGAAQVMDNVSIY 77

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + ++A+AD ++++ATTAR R+  K +++P+ A     + + SGQ VGI+FG ER GL N
Sbjct: 78  DDTRDAVADCNYVFATTARGRDLTKPIMSPEAAMKHTRDLMASGQKVGILFGPERAGLEN 137

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGEL 192
           ++I+ +NAIIS PVNP F SLN+ Q VLL+ +E   + N   S   ++ +      K E+
Sbjct: 138 DDISRANAIISVPVNPAFASLNLGQCVLLLSYEYRRLANQAPSELFDLSKTRWAEAK-EV 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            S  D+ E  LEE  +F P  K   +  +L ++  R  L   +V L  GI+  L +
Sbjct: 197 ESLQDHFEEKLEEAHFFFPEHKAAHLKKNLRNMLSRLPLTINDVGLFHGILRALTR 252


>gi|103486280|ref|YP_615841.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98976357|gb|ABF52508.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 248

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 101/251 (40%), Positives = 150/251 (59%), Gaps = 12/251 (4%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  +A  PVI+LV PQLGENIG  ARAM NF LT+LRLV+PRDGWP+  A  +SA AD V
Sbjct: 1   MTAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVV 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   RVF  L EA+AD   IYATT R R   K+VL P+ AA  ++ +   G++   +FG 
Sbjct: 61  LAGARVFETLAEAVADCTDIYATTVRKRGVTKAVLTPEAAAQKVHAQ--PGRSA-YVFGP 117

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK------ 181
           ER GL  +++AL++AI++ P+NP F SLN++QAV+L+ +E  ++  V  + +V       
Sbjct: 118 ERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKH--VPGDGHVALASPPE 175

Query: 182 -EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
              + PA  GEL   + +    L++ GYF P E++   L  L +   +      ++ ++ 
Sbjct: 176 VPLDPPAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMH 235

Query: 241 GIVSTLDKFSR 251
           GI+  L +  R
Sbjct: 236 GIIVALGRAPR 246


>gi|126729831|ref|ZP_01745644.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
           E-37]
 gi|126709950|gb|EBA09003.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
           E-37]
          Length = 249

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 1/241 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + ++ A  ++D  +  
Sbjct: 8   PAIVLVRPQMGENIGAAARAMWNFGLDRMRVVGPRDGWPNPKAVAMASGAGRLLDEAQHT 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A++D HF+ ATTAR+R+  K+V  P+EA      RI +GQ V ++FG ER GL N
Sbjct: 68  DTLADALSDCHFVLATTARSRDLTKTVYEPREAMAEAARRIAAGQRVAVMFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           E++A +NAI++ PVNP F SLN++Q VLLM +E    +   + K      T  A   E+ 
Sbjct: 128 EDVAQANAIVTVPVNPEFYSLNLAQCVLLMSYEWQRATADIAPKAEALAGTEFAEAHEVE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
               + E  L+E G+F P  K + M  +L +++ R  L R +V +L G++  + +++ + 
Sbjct: 188 HLARHYEQQLDEAGFFFPETKAEGMKVNLRNMWSRMPLTRADVQMLHGMMRQMVRWANKK 247

Query: 254 S 254
           +
Sbjct: 248 A 248


>gi|254419003|ref|ZP_05032727.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185180|gb|EDX80156.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 269

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 140/234 (59%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +IL   Q+ ENIG VAR M NF LT LRLV PRDGWP E+A ++++ AD V++ VRVF
Sbjct: 15  PAVILDKSQMAENIGAVARVMANFGLTDLRLVTPRDGWPQERAWATASGADWVLEGVRVF 74

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ EA+ADL+ ++ATTAR R   + V  P+EA  +L +   SG   G++FG ER GL  
Sbjct: 75  DSVAEAVADLNTVFATTARPRETRQPVRTPREAGRILYDDTASGLKTGLLFGGERAGLET 134

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            +IAL   I++ P++P   SLN++QAV +  +E     + +     ++   PA+   L+ 
Sbjct: 135 TDIALCAGIVTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRFRDSEPPASNDLLVG 194

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++LE  LE  G+F P EKK+ M  +L  +  R     +EV  +RG +  L K
Sbjct: 195 MYEHLEAELELGGFFYPPEKKRSMSQNLRVMLGRAAFSEQEVATMRGAIHALAK 248


>gi|163731767|ref|ZP_02139214.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
           Och 149]
 gi|161395221|gb|EDQ19543.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
           Och 149]
          Length = 251

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/244 (40%), Positives = 152/244 (62%), Gaps = 1/244 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +N+   P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP++ A + ++ A  
Sbjct: 3   ETRNNPATPAFVLVRPQMGENIGASARAMWNFGLDRMRVVAPRDGWPNQAAVALASGAGR 62

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++D+  +  +L  +I D  F++ATTAR R+  K V +P+EA     ERI +G+ V ++FG
Sbjct: 63  LLDNASLSPDLPASIEDCSFVFATTARPRDLTKPVFSPEEAMRAAAERISAGERVAVLFG 122

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            ER GL NE+IA +NAIIS PVNP FPSLN++Q VLL+ +E M  +   + + V+   T 
Sbjct: 123 PERAGLENEDIARANAIISVPVNPDFPSLNLAQCVLLVGYEWMRATGDVTPQAVEMSGTE 182

Query: 187 -ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A   E+     + E  LEE G+F P  K + M  +L + + R  + R +V +L G++  
Sbjct: 183 WAENIEVEHLATHYEDRLEEMGFFFPAHKSQSMRMNLRNFWSRMPMTRADVQMLHGMMRQ 242

Query: 246 LDKF 249
           + ++
Sbjct: 243 MVRW 246


>gi|84516146|ref|ZP_01003506.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
           vestfoldensis SKA53]
 gi|84509842|gb|EAQ06299.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
           vestfoldensis SKA53]
          Length = 246

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/242 (40%), Positives = 148/242 (61%), Gaps = 6/242 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +L+ PQ+GENIG  AR MWNF L ++R++ PRDGWP+++A + ++ A  ++D  ++F
Sbjct: 8   PAFVLIRPQMGENIGAAARGMWNFGLDRMRVIAPRDGWPNQRAVAMASGAGRLLDEAQLF 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +   AIAD  F+YATTAR R   K VL+P+ A      RI +G  V ++FG ER G+ N
Sbjct: 68  EDTAAAIADCDFVYATTARPRGLTKPVLSPEAAMQDAYARIAAGGKVAVMFGPERAGMEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---ATKGE 191
           ++IA +NAIIS PVNP FPSLN++Q VLL+ +E      V+ E      + P   AT+ E
Sbjct: 128 DDIARANAIISVPVNPDFPSLNLAQCVLLLGYEWRR---VTGEVVALRHDAPGDWATQLE 184

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +    D+ +  L+E G+F P  K   M  +L +++ R  L R +V +L GI+  + ++  
Sbjct: 185 VEKLADHYQDRLDEAGFFFPDHKAANMQMNLRNLWSRLPLTRADVQMLHGILRQMVRWKE 244

Query: 252 QS 253
           + 
Sbjct: 245 RG 246


>gi|329849321|ref|ZP_08264167.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841232|gb|EGF90802.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 267

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 148/248 (59%), Gaps = 7/248 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           AP L  +   P +IL  PQL +NIG VAR M NF L +LRLV PRDGWP ++A ++S+ A
Sbjct: 7   APPLDPNLTLPCVILDRPQLADNIGSVARVMANFGLQELRLVAPRDGWPQDRAWATSSGA 66

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +  +D  +VF+ + EA+ADL  +YATTARNR     V+ P++ A+         Q  G++
Sbjct: 67  NWPLDGAKVFATVAEAVADLKTVYATTARNREVHLPVVTPRQTAVEAYAAAQGHQKTGLL 126

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNV 180
           FG ER GL   +IAL +AI++ PV+P F SLN++QAV ++++E     M+    +  +N+
Sbjct: 127 FGAERAGLETSDIALCHAIVTIPVDPHFHSLNLAQAVNIILYEWRLLVMDAPKAAFTQNM 186

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
            E   PA    L     +LE  LE  G+F P EKK+ ML +L  +  R  +  +E+   R
Sbjct: 187 DE---PADLKFLHGLYGHLEDELEAAGFFFPPEKKESMLRNLRVVLNRARMTEQEIRTWR 243

Query: 241 GIVSTLDK 248
           G+V+ L K
Sbjct: 244 GVVTALTK 251


>gi|329890697|ref|ZP_08269040.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845998|gb|EGF95562.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 261

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 143/234 (61%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV++L   Q+ +NIG VAR M NF L++LRLV+PRDGWP ++A ++++ AD V+D V+VF
Sbjct: 7   PVVVLDKSQMADNIGAVARVMANFGLSELRLVSPRDGWPQDRAWATASGADWVLDGVKVF 66

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ EAIADL+ ++ATTAR R   + V  P+E+A +L +   SG   G++FG ER GL  
Sbjct: 67  DSVAEAIADLNTVFATTARPRETRQPVRTPRESARILYDDTASGLKTGLLFGGERAGLET 126

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            +IAL   I + P++P   SLN++QAV +  +E     + +     +E   PA+   LL 
Sbjct: 127 GDIALCAGITTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRFREGEPPASNDLLLG 186

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++LE  L+  G+F P EK++ M  +L  +  R     +EV  +RG +  L K
Sbjct: 187 MYEHLEAELDNGGFFYPPEKRRSMSQNLRVMLGRAAFTEQEVATMRGAIHALAK 240


>gi|209542602|ref|YP_002274831.1| tRNA/rRNA methyltransferase SpoU [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530279|gb|ACI50216.1| tRNA/rRNA methyltransferase (SpoU) [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 258

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/238 (40%), Positives = 146/238 (61%), Gaps = 1/238 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV PQ+ ENIG  ARAM N  L  LRLV PRDGWP E+A  S++ AD ++++  V 
Sbjct: 17  PVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAATVH 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ +AIADLH ++AT  R R+  K+VL  +  A  L +    G   G++FG ER GL N
Sbjct: 77  DSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGLDN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELL 193
           E++A ++A+I +P+N  F SLN++QAV++M +E  M          +  +   ATKGEL 
Sbjct: 137 EDMARADALIRYPLNAAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGELD 196

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +F+ +L   L+E G+ R  +K+  M+ +L   F R E+  +E+  L G+V+ L +  R
Sbjct: 197 NFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRR 254


>gi|85373954|ref|YP_458016.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84787037|gb|ABC63219.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 384

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/235 (42%), Positives = 149/235 (63%), Gaps = 6/235 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+LV PQLGENIG  ARAM NF LT+LRLV PRDGWP+  A  S+A AD V++  +VF
Sbjct: 139 PAIVLVRPQLGENIGNAARAMRNFGLTELRLVAPRDGWPNPDAGPSAAGADDVLERAQVF 198

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +   EA+AD   IYATT R R   K V+ P+EAA  ++ +  +G++  ++FG ER GL  
Sbjct: 199 ATTAEAVADCAHIYATTVRKRGVTKPVVTPEEAAQAIHSQ--AGKSA-VLFGPERSGLET 255

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGELL 193
           E++AL+ AI++ P++P F SLN++QAV+L  +E  + + +  E+  +E    PA + EL 
Sbjct: 256 EDVALARAILTVPIDPEFGSLNLAQAVILCAYEWSKGAEL--EQPTQEDLLPPAPQAELD 313

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +LE  L+ +GYF P  + +     L ++  +P     E+  LRG++S+L +
Sbjct: 314 DLIAHLEAMLQPKGYFLPANRTEATRRTLRTVLTKPGWNHLEIRTLRGVLSSLQR 368


>gi|83858779|ref|ZP_00952301.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853602|gb|EAP91454.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 247

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 142/234 (60%), Gaps = 7/234 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV+PQ+GENIG   R M NF + +LR+VNPRDGWP+ KA  S A +  V+D  RVF
Sbjct: 7   PVFILVEPQMGENIGAACRVMGNFGIPELRIVNPRDGWPNPKA-VSMATSSPVLDDARVF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+EA+AD   ++A+TA+ RN  K V   +E    +   + +GQ VG++FG E+ GL N
Sbjct: 66  DTLEEAVADCQLLFASTAQPRNMVKPVFTAREGMAEIRGHVEAGQRVGVLFGAEKSGLPN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192
             I LSNAII+ PV+  F SLN++ AV +    W   E     + ++ K  +  AT+ E+
Sbjct: 126 AAITLSNAIITLPVDRSFSSLNLAMAVGVFAHEWRAGE----PTPEDFKPLDDRATEQEM 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            +F  +LE  L+  G+F P EK   M+ +L + F R  L ++EV  LRG++  L
Sbjct: 182 TAFYAHLEQELDRAGFFYPPEKTPLMMQNLINAFARGGLTQQEVRTLRGVIKAL 235


>gi|310816156|ref|YP_003964120.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
           vulgare Y25]
 gi|308754891|gb|ADO42820.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
           vulgare Y25]
          Length = 245

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/233 (39%), Positives = 143/233 (61%), Gaps = 1/233 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +L+ PQ+GENIG  ARAMWNF L ++R++ PRDGWP+EKA + ++ A  ++D  +++
Sbjct: 8   PAFVLIQPQMGENIGAAARAMWNFGLDRMRVIAPRDGWPNEKAVAMASGAGRLLDEAQLY 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +   EAIAD  F+YATTAR R   K V++P+ A    + RI  G+ V I+FG ER G+ N
Sbjct: 68  ATTAEAIADCTFVYATTARPRGLTKPVMSPEAALRDAHARIARGEKVAIMFGPERAGMEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           ++IA +N II+ PVNP FPSLN++Q VLL  +E    +    ++ ++      A   ++ 
Sbjct: 128 DDIARANVIITVPVNPEFPSLNLAQCVLLTAYEWRRAADAVVDERIEMAGAEWANNADIE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +   + E  L+E G+F P  K + M  +L +++ R  L R +   L GI+  L
Sbjct: 188 ALATHFEERLDEAGFFFPEHKAQSMKLNLRNLWSRMPLTRADTATLHGILRQL 240


>gi|126736426|ref|ZP_01752167.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
 gi|126713964|gb|EBA10834.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
          Length = 246

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 142/239 (59%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +L+ PQ+GENIG  AR MWNF L ++R++ PRDGWP++KA + ++ A  ++D  ++F
Sbjct: 8   PAFVLIRPQMGENIGAAARGMWNFGLDRMRIIAPRDGWPNQKAVAMASGAGRLLDEAQIF 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +   AIAD  ++YATTAR R   K VL P+ A      R   GQ V ++FG ER G+ N
Sbjct: 68  DDTAGAIADCDYVYATTARPRGLTKLVLTPEAAMQDARARAAQGQKVAVMFGPERSGMEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           ++IA +NAIIS PVNP FPSLN++Q VLL  +E    ++      V      A + E+  
Sbjct: 128 DDIARANAIISVPVNPDFPSLNLAQCVLLTGYEWQREAVEVDASRVDAAGDWAEQIEIEK 187

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
             ++ E  LE  G+F P  K + M  +L +++ R  + R +V +L G++  + ++  + 
Sbjct: 188 LSEHYEERLEAAGFFYPEHKAENMKLNLRNMWSRMPMTRADVQMLHGMMRQMVRWKERG 246


>gi|296114999|ref|ZP_06833643.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978461|gb|EFG85195.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 258

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 145/235 (61%), Gaps = 1/235 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVIILV PQ+ ENIG  ARAM N  L  +RLV PRDGWP E+A  +++ AD +++S  VF
Sbjct: 17  PVIILVRPQMAENIGTTARAMANGGLFHMRLVAPRDGWPQERAWRAASGADRILESATVF 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +A+ADLH ++AT  R R+  K V+  +  A  L      G   G++FG ER GL N
Sbjct: 77  DTVGDAVADLHHVFATCPRPRHIVKPVMTARGGAAELRAISRRGLRTGLLFGPERAGLDN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELL 193
           E++A ++A+I +P+NP F SLN++QAV++M +E  M        + +  +   ATKGEL 
Sbjct: 137 EDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTQDDTPPRELMTNETHVATKGELD 196

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +F+ +L   L+E G+ R  +K+  M+ +L   F R E+  +E+  L G+V+ L +
Sbjct: 197 NFMRHLIGDLDECGFLRNEQKRPGMVRNLRHFFERGEVTEQELRTLHGVVTELAR 251


>gi|110679943|ref|YP_682950.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
 gi|109456059|gb|ABG32264.1| RNA methyltransferase, TrmH family [Roseobacter denitrificans OCh
           114]
          Length = 251

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 95/235 (40%), Positives = 145/235 (61%), Gaps = 1/235 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV PQ+GENIG  ARAMWNF L  +R+V PRDGWP++ A + ++ A  V+D+ ++  
Sbjct: 12  AFVLVRPQMGENIGASARAMWNFGLEHMRVVAPRDGWPNQAAVALASGAGRVLDNAQLSD 71

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L  ++ D  F++ATTAR R+  K V +P+EA  V  +RI +G+ + ++FG ER GL N+
Sbjct: 72  DLPGSVGDCSFVFATTARPRDLTKPVFSPEEAMRVAAQRIAAGERIAVLFGPERAGLEND 131

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLS 194
           +IA +NAIIS PVNP FPSLN++Q VLL+ +E M  +   +   V    T  A   E+  
Sbjct: 132 DIARANAIISVPVNPAFPSLNLAQCVLLVGYEWMRATHDVTPHTVDMSGTQWADHIEVEH 191

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
              + E  LEE G+F P  K   M  +L + + R  + R +V +L G++  + ++
Sbjct: 192 LATHYEDRLEEMGFFFPAHKSHSMRVNLRNFWSRMPMTRADVQMLHGMMRQMVRW 246


>gi|217976583|ref|YP_002360730.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
 gi|217501959|gb|ACK49368.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
          Length = 281

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/239 (44%), Positives = 152/239 (63%), Gaps = 6/239 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68
           GP IILV PQL  NIGM ARAM NF L+ LRLV+PR+GWP      + A +++A A  ++
Sbjct: 16  GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGALKKGAHAAAAGAVHLL 75

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +++   +EA+ADL+F++ATTAR R   K VL P EA       I  G   G++FG E
Sbjct: 76  EGAKLYDTPEEAVADLNFVFATTARERGQHKPVLTPAEALPGAALAIAGGAKGGVMFGPE 135

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           R GL+N+E+AL++ +I+FPVNP + SLN++QAVLL+ +E M  S  +    V +  +P  
Sbjct: 136 RTGLSNDEVALADRLITFPVNPAYASLNLAQAVLLIGYEWMRASTEAKAPFVADPRSPPA 195

Query: 189 KGEL-LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             E+ LSF  YLE  LE  G+FRP++K   M  ++ +IF R +L  ++V  LRG +  L
Sbjct: 196 PREMVLSFFAYLEGELERVGFFRPLDKAPVMRRNIKNIFHRLDLSAQDVSTLRGAIVRL 254


>gi|294012167|ref|YP_003545627.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292675497|dbj|BAI97015.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 350

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/236 (41%), Positives = 142/236 (60%), Gaps = 4/236 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A  PVI+LV PQLGENIG  ARAM NF L ++RLV+PRDGWP+  A  S+A AD V+D 
Sbjct: 113 TAPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVVLDK 172

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             VF  L +A+AD   +YATT R R   K V+ P+EAA  ++    +G++   +FG ER 
Sbjct: 173 AEVFGTLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIH--AATGRSA-YVFGPERS 229

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL  E++AL+  I++ P+NP F SLN++QAV+L  +E  + + +  +  V +   PA + 
Sbjct: 230 GLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASL-EQPTVVDLGEPAPQA 288

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           EL   +   E  LE  GYF P ++       L ++  +P     EV  LRG++S L
Sbjct: 289 ELEGMIGQFETLLESAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 344


>gi|148260405|ref|YP_001234532.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
 gi|146402086|gb|ABQ30613.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
          Length = 257

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/240 (40%), Positives = 147/240 (61%), Gaps = 1/240 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVIILV PQL ENIG VARAM N  L  LRLV PRDGWP ++A  +++ A  ++++  V 
Sbjct: 17  PVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTASGAYRILEAATVH 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +A+ DLH ++AT  R R+  K +L  + AA  L E    G   GI+FG ER GL N
Sbjct: 77  DTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCGILFGPERAGLDN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           ++IA ++++I +P+NP F SLN++QAV++M +E       +  + ++   T  ATKGEL 
Sbjct: 137 DDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRTLQTHKTHVATKGELE 196

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +FL +L    +E G+ R  +K+  M+ ++   F R E+  +E+  L GIV+ L +  R +
Sbjct: 197 NFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHGIVTELARGRRGA 256


>gi|326403597|ref|YP_004283679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
 gi|325050459|dbj|BAJ80797.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
          Length = 257

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/240 (40%), Positives = 147/240 (61%), Gaps = 1/240 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVIILV PQL ENIG VARAM N  L  LRLV PRDGWP ++A  +++ A  ++++  V 
Sbjct: 17  PVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTASGAYRILEAATVH 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +A+ DLH ++AT  R R+  K +L  + AA  L E    G   GI+FG ER GL N
Sbjct: 77  DTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCGILFGPERAGLDN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           ++IA ++++I +P+NP F SLN++QAV++M +E       +  + ++   T  ATKGEL 
Sbjct: 137 DDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRKLQTHKTHVATKGELE 196

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +FL +L    +E G+ R  +K+  M+ ++   F R E+  +E+  L GIV+ L +  R +
Sbjct: 197 NFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHGIVTELARGRRGA 256


>gi|149204047|ref|ZP_01881015.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           TM1035]
 gi|149142489|gb|EDM30534.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           TM1035]
          Length = 247

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 146/237 (61%), Gaps = 3/237 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++RLV PRDGWP+ KA + ++ A  ++D   + 
Sbjct: 8   PAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKADAMASGAGRLLDEALLV 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++   A+ D  ++ ATTAR R   K VL+P+ A +V  E+I +G+ V ++FG ER GL N
Sbjct: 68  ADTAAAVGDCTYVLATTARARGLTKPVLSPERAMVVAAEKIAAGEKVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192
           ++IA +NAII+ PVNP F SLN+ Q VLLM   W+     +V    ++ + +  A + E+
Sbjct: 128 DDIARANAIINVPVNPEFASLNLGQCVLLMAYEWQRAAGQVVPERVDLAKTDW-AAQVEV 186

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +   + E  LEE G+F P  K + M  +L +++ R  + R +V  L G++  + ++
Sbjct: 187 EALAAHYEERLEEAGFFFPEHKVESMKTNLRNMWSRMPMTRADVQTLHGVMRQMVRW 243


>gi|144900197|emb|CAM77061.1| rRNA methylase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 244

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 145/239 (60%), Gaps = 2/239 (0%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           PQL ENIG  ARAM N  LT LRLV PR  W S++A ++++ AD V+   ++F    EA+
Sbjct: 3   PQLSENIGTAARAMLNNGLTDLRLVAPRPDWLSDRAIAAASGADRVVLGAKIFDTTAEAV 62

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           ADL+ ++ATTARNR   K V  PK AA+ +      GQ  G++FG ER GL N+++AL++
Sbjct: 63  ADLNRVWATTARNRFMVKPVDTPKSAALAMRALDADGQKFGVMFGPERTGLENDDVALAD 122

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLSFLDYL 199
            +++ P+NP + SLN++Q VLL+ +E  + +   +      K    PATK +L  F D+L
Sbjct: 123 TVVTVPLNPDYSSLNLAQCVLLVAYEWYQAAAPTLPERHMTKGAEPPATKEKLQHFFDHL 182

Query: 200 EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
           E  L+E G+ R  +K+  M+ ++ ++F R  L  +EV  L GIV  L  +  +  + +N
Sbjct: 183 ERELDECGFLRIADKRPVMVRNIRNLFQRAHLTGQEVQTLHGIVHELVTYRHRKGKSHN 241


>gi|307292706|ref|ZP_07572552.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306880772|gb|EFN11988.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 351

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 136/232 (58%), Gaps = 4/232 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVI+LV PQLGENIG  ARAM NF L ++RLV+PRDGWP+  A  S+A AD V+D   VF
Sbjct: 118 PVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVVLDKAEVF 177

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+AD   +YATT R R   K V+ P+EAA    E   +      +FG ER GL  
Sbjct: 178 ETLADAVADCAHVYATTVRKRGVTKPVVTPEEAA---REIHAAAGRSAYVFGPERSGLET 234

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           E++AL+  I++ P+NP F SLN++QAV+L  +E  + + +  +  V +   PA + EL  
Sbjct: 235 EDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASL-EQPTVVDLGEPAPQAELEG 293

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            +   E  LE  GYF P ++       L ++  +P     EV  LRG++S L
Sbjct: 294 MIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 345


>gi|85708541|ref|ZP_01039607.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85690075|gb|EAQ30078.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 249

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/249 (42%), Positives = 149/249 (59%), Gaps = 11/249 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A  PVI+LV PQLGENIG  ARAM NF LT++R+VNPRDGWP+  A  ++A AD V+D  
Sbjct: 2   ANKPVIVLVRPQLGENIGKAARAMLNFGLTEMRIVNPRDGWPNPSAGPAAAGADIVLDEA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VFS+  EA+AD   +YATT R R   K V+ P  AA +++     G++  I+FGRE  G
Sbjct: 62  KVFSSTAEAVADCEHVYATTVRKRGVTKPVVGPDGAARLIHAE--PGRHA-ILFGREASG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE----KNVKEQ 183
           L  E++AL+  I++ P+NP F SLN++QAV+L  +E      E    SS+        E 
Sbjct: 119 LETEDVALARHILTVPINPEFGSLNLAQAVILCAYEWSRIGREAEDASSDLVQPTAEDEA 178

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
             PA + +L   + + E  L+ RGYF P  +++     L S+  +P     EV  LRGI+
Sbjct: 179 LPPAPQDDLEGLIGHFEKLLDPRGYFLPESRREATARTLRSVLTKPGWNHLEVRTLRGIL 238

Query: 244 STLDKFSRQ 252
           STL++  R 
Sbjct: 239 STLERPPRD 247


>gi|89068982|ref|ZP_01156364.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
           HTCC2516]
 gi|89045563|gb|EAR51627.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
           HTCC2516]
          Length = 247

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 145/236 (61%), Gaps = 1/236 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +L+ PQ+GENIG  ARAMWNF L ++RLV PRDGWP+  A + ++ A  ++D  ++F
Sbjct: 8   PAFVLLRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPSAVALASGAGRLLDEAQLF 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              + AI+D  F+YATTAR R   K V+ P+ A      R+  G+ V ++FG ER G+ N
Sbjct: 68  DTTEAAISDTTFVYATTARPRELTKPVMTPEAAMSDAAARVARGEKVAVMFGPERAGMEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
            +IA ++AI+S PVNP FPSLN++Q VLL+ +E    +  ++   +K Q T  A + E+ 
Sbjct: 128 ADIAAASAIVSVPVNPDFPSLNLAQCVLLLGYEWRRATSQTAPVRLKGQRTELAERLEVE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
              D+ E  L E G+F P  K + M  +L +++ R  L R +V +L GI+  + ++
Sbjct: 188 RLGDHYEERLAEAGFFFPEHKAEGMRLNLRNLWSRMPLTRADVQMLHGILRQMVRW 243


>gi|302384235|ref|YP_003820058.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194863|gb|ADL02435.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 267

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 138/234 (58%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+IL   Q+ ENIG VAR M NF L +LRLV+PRDGWP ++A   ++ AD V+D V+VF
Sbjct: 7   PVVILDRSQMAENIGAVARVMANFGLDRLRLVSPRDGWPQDRAWPLASGADWVLDGVQVF 66

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++  A ADL  ++ATTAR R   + V  P++A+ VL +   SG  VG++FG ER GL  
Sbjct: 67  DSVAAATADLTTVFATTARPRETRQPVRTPRDASRVLYDDAASGLGVGLLFGSERAGLET 126

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            +IAL   I++ P++P   SLN++QAV +  +E     + +   N +E   PA+    + 
Sbjct: 127 SDIALCQGIVTIPIDPRHQSLNLAQAVAINAYEWRTLVLDAPPPNFREGEPPASGALAVG 186

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++LE  L+  G+F P EK + M  +L  +  R     +EV   RG++  L K
Sbjct: 187 MYEHLERELDAAGFFHPPEKFRSMSQNLRVMLGRAAFTEQEVATFRGVIHALSK 240


>gi|83311228|ref|YP_421492.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82946069|dbj|BAE50933.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 255

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 152/246 (61%), Gaps = 1/246 (0%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            S  GP IILV PQL ENIG  ARAM N  LT +R+V PR+GW SEKA ++++ AD ++ 
Sbjct: 6   TSRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGADRLLL 65

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           S +VF   K+A+ADL+ ++ATT R+R   K V  P+EAA  +      GQ  G++FG ER
Sbjct: 66  SAKVFEQTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVLFGPER 125

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPAT 188
            GL N+++A+++ +++ P+NP + SLN++QAVLL+ +E  +     +     K    PAT
Sbjct: 126 TGLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQCEAAETLPPMTKGAEGPAT 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K +L+ F ++LE  L+  G+ R  +K+  M+ ++ ++F R  L  +E+  L GIV  L  
Sbjct: 186 KEKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVT 245

Query: 249 FSRQSS 254
           +  Q  
Sbjct: 246 YRHQKG 251


>gi|85705325|ref|ZP_01036424.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
 gi|85670198|gb|EAQ25060.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
          Length = 247

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/241 (39%), Positives = 147/241 (60%), Gaps = 3/241 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+E+A + ++ A  ++D   + 
Sbjct: 8   PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNERAVAMASGAGRLLDEALLV 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +A+AD  F+ ATTAR R   K VL+P+ A  +  E+I +G+ V ++FG ER GL N
Sbjct: 68  ESTADAVADCSFVLATTARARGLTKPVLSPERAMGLAAEKIAAGEKVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192
           ++IA +NAII+ PVNP F SLN+ Q VLL    W+     +V    ++ + +  A + E+
Sbjct: 128 DDIARANAIINVPVNPEFASLNLGQCVLLTAYEWQRAAGQVVPERVDLAKTDW-AAQVEV 186

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +   + E  LEE G+F P  K   M  +L +++ R  + R +V  L G++  + ++  +
Sbjct: 187 EALAAHYEERLEEAGFFFPEHKAGSMKTNLRNMWSRMPMTRADVQTLHGVMRQMVRWKAR 246

Query: 253 S 253
           S
Sbjct: 247 S 247


>gi|86138325|ref|ZP_01056899.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           MED193]
 gi|85824850|gb|EAQ45051.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           MED193]
          Length = 260

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/254 (38%), Positives = 149/254 (58%), Gaps = 3/254 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V+PRDGWP+ KA + ++ A  ++D   + 
Sbjct: 8   PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPKAVAMASGAGRLLDEAILA 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L EA+ D  F++ATTAR R   K V +P+ A  +  ++I +G+ V ++FG ER GL N
Sbjct: 68  QDLPEALEDCSFVFATTARPRELVKPVYSPEAAMKLAAQKIKTGEKVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192
           E+IA +NAIIS PVNP F SLN+ Q VLL    W+     +V    ++ + +  AT  ++
Sbjct: 128 EDIARANAIISVPVNPDFASLNLGQCVLLTAYEWQRQTQDVVDEAIDLGKTDW-ATGRDV 186

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            + + + E  L+E G+F P  K   M     ++F R  L R +V +L G++  + ++  +
Sbjct: 187 EALVRHYEDRLDEAGFFFPATKAAGMKVVFRNMFSRLPLTRADVQMLHGVMRQMVRWRHK 246

Query: 253 SSRRNNVLLQKTEK 266
                      TEK
Sbjct: 247 DDPAQGEADPSTEK 260


>gi|114771074|ref|ZP_01448514.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
 gi|114548356|gb|EAU51242.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
          Length = 249

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/235 (40%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P IIL+ PQ+GENIG  ARAM NF +  + +V+PRDGWP+ +A+S +A A  V+D+V++F
Sbjct: 11  PSIILIGPQMGENIGASARAMLNFGIENMSIVSPRDGWPNARAKSMAAGAGRVLDTVQLF 70

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +A+ +L+F++ATTAR R+  K V++P+ A +        G+ VG +FG E  GL+N
Sbjct: 71  DKTSDALKNLNFVFATTARTRDLAKEVMSPERAMMYARALTQKGKKVGFMFGPESSGLSN 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTPATKGELL 193
           E+IA +N ++S PVNP F SLN+SQ VLL+ +E    +I +  E         A+  E+ 
Sbjct: 131 EDIAQANVLVSVPVNPEFSSLNLSQCVLLLAYEWQRQTIEIPHEIMALAGTEFASINEVQ 190

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +D  E +L+ R +F P  K + ML    ++F R +L + +V +L GI   ++K
Sbjct: 191 KLVDRSEEALQARNFFWPKNKSESMLLSFRNMFSRLKLTKMDVQILHGIFKAMEK 245


>gi|87200257|ref|YP_497514.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135938|gb|ABD26680.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 251

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 146/242 (60%), Gaps = 4/242 (1%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + + +A+ PVI+LV PQLGENIG  ARAM NF L ++RLV+PRDGWP+  A  ++A AD 
Sbjct: 3   EAEGAARHPVIVLVRPQLGENIGKAARAMLNFGLAEMRLVSPRDGWPNPSAGPAAAGADI 62

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V++  +VF  L EA+AD   +YATT R R   K VL P++AA    + + +     IIFG
Sbjct: 63  VLERAQVFPTLAEAVADCSHVYATTVRKRGVTKPVLTPEQAA---RDIVSASGRSAIIFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            ER GL  +++AL+ AI++ P+NP F SLN++QAV+L  +E  ++ +   +  V++   P
Sbjct: 120 PERSGLETDDVALARAIVTVPINPEFGSLNLAQAVILCAYEWSKH-VDLVQPTVEDMLPP 178

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + E     + L   LE RGYF P  +       L ++  +P     EV  +RG++S L
Sbjct: 179 APQEEFEGMFEQLCTMLEPRGYFEPESRAASTRRTLRTMLTKPGWNHLEVRTMRGVLSAL 238

Query: 247 DK 248
            +
Sbjct: 239 RR 240


>gi|259416114|ref|ZP_05740034.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
 gi|259347553|gb|EEW59330.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
          Length = 249

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/241 (39%), Positives = 146/241 (60%), Gaps = 1/241 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP++KA + ++ A  ++D  ++ 
Sbjct: 8   PHFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEAQLA 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L EA+AD  +++ATTAR R   K V +P+ A     E +  G+ V ++FG ER GL N
Sbjct: 68  QDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELLRQGEKVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELL 193
           ++IA +NAII+ PVNP F SLN++Q VLL  +E   +   V  E     ++  AT  E+ 
Sbjct: 128 DDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQEEQVPDETFEIGKSDWATGQEIE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           + + + E  L E GYF P EK   M     +++ R  L R +V +L G++  + ++ +  
Sbjct: 188 ALVTHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMRLTRADVQMLHGVMRQMVRWKQHG 247

Query: 254 S 254
           S
Sbjct: 248 S 248


>gi|163736384|ref|ZP_02143803.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
           BS107]
 gi|161390254|gb|EDQ14604.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
           BS107]
          Length = 280

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 144/236 (61%), Gaps = 7/236 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GEN+G  ARAMWNF L ++R+V PRDGWP+ KA + ++ A  ++D  R+ 
Sbjct: 40  PAFVLVRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLA 99

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  AI D  F++ATTAR R   K V +P+ A  +  E+I +G+ V ++FG ER GL N
Sbjct: 100 EDLAGAIEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLEN 159

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATKG 190
           E+IA +NAIIS PVNP F SLN+ Q VLL  +E      E + V ++    +    A+  
Sbjct: 160 EDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDW---ASHA 216

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           ++ + +++ E  L++ G+F P +K   M     ++F R  L R +V +L GI+  +
Sbjct: 217 DVDALVNHYEDRLDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQM 272


>gi|149184437|ref|ZP_01862755.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148831757|gb|EDL50190.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 243

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/242 (41%), Positives = 147/242 (60%), Gaps = 6/242 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K PV++LV PQLGENIG  ARAM NF L +LR+V PRDGWP+  A  ++A AD V++  R
Sbjct: 7   KKPVVVLVRPQLGENIGKAARAMLNFGLVELRMVTPRDGWPNPDAGPAAAGADIVLEKAR 66

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF +  EA+AD   +YATT R R   K V  P+EA+    E   +     I+FG ER GL
Sbjct: 67  VFDSTAEALADCSHVYATTVRKRGVTKPVYTPEEAS---REMAQADGRSAILFGPERSGL 123

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGE 191
             E++AL+ AI++ P+NP F SLN++QAV+L  +E     S+V   +  ++Q  PA + E
Sbjct: 124 ETEDVALARAILTVPINPEFGSLNLAQAVILCAYEWSKHESLVQPTQ--EDQLPPAPQKE 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L   + ++E  LE +GYF P  + +     L  +  +P     EV  LRG++S+L + ++
Sbjct: 182 LEGLIAHMEGMLESKGYFLPESRAEATRRTLRGVLTKPGWNHLEVRTLRGVLSSLQRDAK 241

Query: 252 QS 253
           +S
Sbjct: 242 RS 243


>gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040]
 gi|99037457|gb|ABF64069.1| RNA methyltransferase TrmH group 1 [Ruegeria sp. TM1040]
          Length = 249

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/239 (39%), Positives = 148/239 (61%), Gaps = 1/239 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + ++ A  ++D  ++ 
Sbjct: 8   PDFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEAQLA 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L EA+AD  +++ATTAR R   K V +P+ A     E +  G+ V ++FG ER GL N
Sbjct: 68  QDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELMVQGEKVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELL 193
           ++IA +NAII+ PVNP F SLN++Q VLL  +E   +   V+ E     ++  AT  E+ 
Sbjct: 128 DDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQQEQVAHETFEIGKSEWATNQEVE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           + +++ E  L E GYF P EK   M     +++ R +L R +V +L G++  + ++ ++
Sbjct: 188 ALVNHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMQLTRADVQMLHGVMRQMVRWKQR 246


>gi|260574015|ref|ZP_05842020.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
 gi|259023481|gb|EEW26772.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
          Length = 270

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 142/246 (57%), Gaps = 1/246 (0%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           Y   +Q+    P  ILV PQ+GENIG  ARAM NF L +LR+V PRDGWP+ KA + ++ 
Sbjct: 18  YLAAMQDPQASPAFILVRPQMGENIGAAARAMLNFGLERLRVVGPRDGWPNPKAVAMASG 77

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D    + +++ AIAD  +++ATTARNR   K V+ P+ A       I +G+ VG+
Sbjct: 78  AGRLLDFAGPYPDVQAAIADCDYVFATTARNRELTKPVMTPERAMEHARALIAAGKRVGV 137

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FG ER GL N ++ L+NAI+S PVNP FPSLN+ Q VLL+ +E    +     + +   
Sbjct: 138 LFGPERAGLENSDLVLANAIVSVPVNPDFPSLNLGQCVLLLGYEWRRQTACVPPEVMAMA 197

Query: 184 NTPATKG-ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            T    G E+    D+ E  LE  G+F P  K   M   L +++ R  L R +V  L G+
Sbjct: 198 GTDFASGIEVEKLGDHFEDRLEAAGFFFPATKAAGMKLVLRNMWSRLHLTRADVQSLHGM 257

Query: 243 VSTLDK 248
           +  + +
Sbjct: 258 LRQIAR 263


>gi|254475698|ref|ZP_05089084.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
 gi|214029941|gb|EEB70776.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
          Length = 248

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 146/240 (60%), Gaps = 3/240 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP++KA + ++ A  ++D  ++ 
Sbjct: 8   PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEAQLS 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L +++ D  F++ATTAR R   K V +P+ A  +  E+  +GQ V ++FG ER GL N
Sbjct: 68  ATLADSLEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKTAAGQKVAVMFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGEL 192
           E++A +NAII+ PVNP F SLN+ Q VLL    W      +V    ++ + +  A   ++
Sbjct: 128 EDVARANAIITVPVNPEFASLNLGQCVLLTAYEWRRQVEEVVDVTTDLGKSDW-ANHADV 186

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            + +++ E  LEE G+F P EK   M     ++F R  L R +V +L G++  + ++  +
Sbjct: 187 DALVNHYEGRLEEAGFFFPPEKAPGMKVVFRNLFSRLPLTRADVQMLHGVMRQMVRWKEK 246


>gi|254486709|ref|ZP_05099914.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
 gi|214043578|gb|EEB84216.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
          Length = 257

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/243 (39%), Positives = 144/243 (59%), Gaps = 3/243 (1%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K P  +LV PQ+GENIG  ARAMWNF L ++R+V+PRDGWP+  A + ++ A  ++D   
Sbjct: 16  KIPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPSAVAMASGAGRLLDEAV 75

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +L  A+ D  F++ATTAR R+  K V +P+ A     E I  GQ V ++FG ER GL
Sbjct: 76  VHDDLAGALGDAAFVFATTARERDLTKQVYSPEAAMAKAAELIAQGQRVAVMFGPERAGL 135

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQNTPATKG 190
            N++IA +NAI+S PVNP F SLN++Q VLLM +E M  + ++V  +  +   N  A   
Sbjct: 136 ENDDIARANAIVSVPVNPEFASLNLAQCVLLMGYEWMRAQGAVVPEQVEMAGTNW-ADNS 194

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+     + E  LE  G+F P  K   M  +L +++ R  L R +V +L G +  + ++ 
Sbjct: 195 EVEHLARHFEERLEVAGFFYPEHKATSMKVNLRNMWSRLPLTRADVQMLHGTLRQMVRWK 254

Query: 251 RQS 253
            + 
Sbjct: 255 ERG 257


>gi|254461267|ref|ZP_05074683.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
 gi|206677856|gb|EDZ42343.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 247

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 147/236 (62%), Gaps = 1/236 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  +RAMWNF+L ++RLV PRDGWP+ KA + ++ A  ++D  ++F
Sbjct: 8   PSFVLVRPQMGENIGAASRAMWNFSLDRMRLVAPRDGWPNPKAVAMASGAGRLLDEAQLF 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               EA+ D  +++ATTAR R   K   +P+ A  +  E+I  G+ V ++FG ER G+ N
Sbjct: 68  QTTAEAVEDCSYVFATTARQRGLTKPAFSPEGAMKLAAEKIAQGEKVAVLFGPERAGMEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGELL 193
           ++IA +NA+I+ PVN  F SLN++Q VLL+ +E       ++ E+    +   A++GE  
Sbjct: 128 DDIARANAVINVPVNSEFGSLNLAQCVLLIGYEWQRQVGNITHERTEMAKTVWASQGETE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           +   + E  L++ G+F P EK + M  +L +++ R  L R +V +L G++  + ++
Sbjct: 188 ALAKHYEDRLDDAGFFFPPEKVESMQMNLRNMWSRMPLTRADVQMLHGVLRQMVRW 243


>gi|254437829|ref|ZP_05051323.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
 gi|198253275|gb|EDY77589.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
          Length = 257

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 141/240 (58%), Gaps = 1/240 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +   A  P I+L+ PQ+GENIG  ARAMWNF L ++R+V PRDGWP+  A + ++ A  +
Sbjct: 13  MPTDAPQPTIVLIRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRL 72

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   V  ++   IAD  ++YATTAR R   K V +P+ A      RI  G+ V +IFG 
Sbjct: 73  LDEAEVSDDVASGIADRTYVYATTARPRELTKPVFSPEAAMRDAAARIARGEKVAVIFGP 132

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-P 186
           ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E         +  V+ Q   P
Sbjct: 133 ERSGMDNSDIAHANAIITVPVNPDFPSLNLAQCVLLVGYEWRRAVAEVVDVVVQGQTVEP 192

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + ++ +   + E  L + G+F P  K   M  +L +++ R  + R +V +L G++  L
Sbjct: 193 ADQRDIEALARHYEDRLNDAGFFYPEHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 252


>gi|46202068|ref|ZP_00053833.2| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 1/245 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP IILV PQL ENIG  ARAM N  L+ +R+V PR+GW SEKA ++++ AD V+ + +V
Sbjct: 3   GPAIILVRPQLSENIGTAARAMLNCGLSDMRIVAPREGWLSEKAIAAASGADRVLLAAKV 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F + K+A+ADL+ ++ATT R+R   K V  P+EAA  +      G   G++FG ER GL 
Sbjct: 63  FESTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAADAEGLKFGVLFGPERTGLE 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192
           N+++A+++ +++ P+NP + SLN++QAVLL+ +E  +     +     K    PA+K +L
Sbjct: 123 NDDVAVADTVLTVPLNPDYCSLNLAQAVLLISYEWHQCEAAETLPAMTKGSEGPASKEKL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           + F ++LE  L+  G+ R  +K+  M+ ++ ++F R  L  +E+  L GIV  L  +  +
Sbjct: 183 IFFFEHLERELDSCGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVTYRHK 242

Query: 253 SSRRN 257
              + 
Sbjct: 243 KGEKG 247


>gi|126737716|ref|ZP_01753446.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           SK209-2-6]
 gi|126721109|gb|EBA17813.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           SK209-2-6]
          Length = 248

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 147/246 (59%), Gaps = 11/246 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP++KA + ++ A  ++D   + 
Sbjct: 8   PSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEALLA 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+ D  F++ATTAR R   K V  P+ A  +  E+I SG+ V ++FG ER GL N
Sbjct: 68  PDLPGALEDCTFVFATTARPRELTKPVYTPEAAMRLAAEKIKSGEKVAVLFGPERAGLEN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP------AT 188
           E+IA +NAIIS PVNP F SLN+ Q VLL  +E    +     ++V E  T       AT
Sbjct: 128 EDIAKANAIISVPVNPDFASLNLGQCVLLTAYEWRRQA-----EDVPEVVTDLGKSDWAT 182

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++ + +++ E  L+E G+F P +K   M     ++F R  L R +V +L G++  + +
Sbjct: 183 GKDVEALVNHYEDRLDEAGFFFPPDKAPSMKVVFRNMFSRMPLTRADVQMLHGVMRQMVR 242

Query: 249 FSRQSS 254
           +  + S
Sbjct: 243 WKEKDS 248


>gi|114766189|ref|ZP_01445189.1| RNA methyltransferase, TrmH family, group 1 [Pelagibaca bermudensis
           HTCC2601]
 gi|114541560|gb|EAU44603.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           HTCC2601]
          Length = 247

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 142/243 (58%), Gaps = 1/243 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +  K P  +LV PQ+GENIG  ARAMWNF L ++RLV+PRDGWP+  + + ++ A  +
Sbjct: 1   MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPSSVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   +  ++  A+ D   ++ATTAR R   K V +P+EA     ERI  G  V ++FG 
Sbjct: 61  LDDAVLSEDVAGAVGDCDLVFATTARQRGMTKPVYSPEEAMRAAAERIAQGGRVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186
           ER GL N ++A +NAIIS PVNP FPSLN++Q VLL  +E    S  + + ++       
Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAEIEARRDEMAGAAW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  E+    ++ E  LEE G+F P  K   M   L +++ R  L  E+V  L GI+  +
Sbjct: 181 ASGIEVEKLAEHYEQRLEEAGFFFPDHKAPAMKLTLRNLWSRMPLTSEDVRTLHGILRQM 240

Query: 247 DKF 249
            ++
Sbjct: 241 VRW 243


>gi|254453515|ref|ZP_05066952.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
 gi|198267921|gb|EDY92191.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
          Length = 245

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 144/240 (60%), Gaps = 1/240 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +   A  P I+L+ PQ+GEN+G  ARAMWNF L ++R+V PRDGWP+  A + ++ A  +
Sbjct: 1   MPTDAPQPTIVLIRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRI 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   V +++ + IAD  ++YATTAR R   K V +P+ A      RI  G+ V ++FG 
Sbjct: 61  LDEAEVSTDVADGIADRTYVYATTARPRELTKPVFSPEAAMKDAAARIARGEKVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-P 186
           ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E         +  V+ Q   P
Sbjct: 121 ERSGMENADIAHANAIITVPVNPEFPSLNLAQCVLLVGYEWRRAVGEVVDVVVQGQTVEP 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + ++ +   + E  L++ G+F P  K   M  +L +++ R  + R +V +L G++  L
Sbjct: 181 ADQRDIEALARHYEDRLDDAGFFYPDHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 240


>gi|77465011|ref|YP_354514.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
 gi|126464273|ref|YP_001045386.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|332560613|ref|ZP_08414931.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|77389429|gb|ABA80613.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
 gi|126106084|gb|ABN78614.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332274411|gb|EGJ19727.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 243

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 1/233 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV PQ+GENIG  ARAM NF L +LR+V+PRDGWP+ KA + ++ A  ++D   +F
Sbjct: 5   PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EAI D  +++ATTAR R   K V+ P+ A          G+ VGI+FG ER GL N
Sbjct: 65  PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193
           E++AL+NAI++ PVNP F SLN++Q VLL+ +E       +  + +         G E+ 
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
              D+ E  LE  G+F P EK   M  +L +++ R  L R +V  L G++  +
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQI 237


>gi|260427916|ref|ZP_05781895.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
 gi|260422408|gb|EEX15659.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
          Length = 247

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 1/247 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +  K P  +LV PQ+GENIG  ARAMWNF L ++RLV+PRDGWP+  + + ++ A  +
Sbjct: 1   MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPASVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   +  ++  A+ D   I+ATTAR R   K V +P+EA      RI +G  V ++FG 
Sbjct: 61  LDDAVLSEDVAGAVGDCDLIFATTARQRGMTKPVYSPEEAMREAASRIAAGGRVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186
           ER GL N ++A +NAIIS PVNP FPSLN++Q VLL  +E    S  + + ++       
Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAGIEARRDEMAGAEW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  E+    ++ E  L+E G+F P  K   M   L +++ R  L RE+V  L GI+  +
Sbjct: 181 ASAIEVEKLSEHYEERLDEAGFFFPDHKAPAMKLTLRNLWSRMPLTREDVRTLHGIMRQM 240

Query: 247 DKFSRQS 253
            ++  + 
Sbjct: 241 VRWKERG 247


>gi|146279814|ref|YP_001169972.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558055|gb|ABP72667.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 243

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 138/230 (60%), Gaps = 1/230 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV PQ+GENIG  ARAM NF L +LR+V+PRDGWP+ KA + ++ A  ++D   +F
Sbjct: 5   PVFILVRPQMGENIGAAARAMLNFGLARLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ EAI D  +++ATTAR R   K V+ P+ A          G+ VGI+FG ER GL N
Sbjct: 65  PSVAEAIRDCDYVFATTARGRELTKPVMTPERAMTHARALTGEGRRVGILFGPERTGLEN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193
           E++AL++AI++ PVNP F SLN++Q VLL+ +E       +  + +         G E+ 
Sbjct: 125 EDVALASAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              D+ E  LE  G+F P EK   M  +L +++ R  L R +V  L G++
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLALTRADVQTLHGML 234


>gi|89054924|ref|YP_510375.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
 gi|88864473|gb|ABD55350.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
          Length = 258

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 151/260 (58%), Gaps = 3/260 (1%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M+   P        P  +LV PQ+GENIG  ARAMWNF L ++R+V+PRDGWP+E+A + 
Sbjct: 1   MSDATPPSVTPGGQPAFVLVRPQMGENIGAAARAMWNFGLDRMRVVDPRDGWPNERAVAL 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  ++D+  ++ +L  A++D  +++ATTAR+R   K ++ P+ A       +  G  
Sbjct: 61  ASGAGRLLDNAGLYQDLPGALSDCTYVFATTARDRGLTKPIVTPERAMEQTRAILAEGGK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKN 179
           VG++FG ER GL N +IA ++AIIS  VNP FPSLN++Q VLL  +E   + S V+ E  
Sbjct: 121 VGVLFGPERAGLENADIAPADAIISVDVNPAFPSLNLAQCVLLCAYEWQRQGSTVAPEVM 180

Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
              +   A+  E+     + E  LEE G+F P  K   M   L +++ R  L R +V  L
Sbjct: 181 ALAKTDFASNLEVEKLGAHYEERLEEAGFFWPPAKADSMKLTLRNLWGRLNLTRADVQTL 240

Query: 240 RGIVSTLDKFSRQSSRRNNV 259
            G++  + +++    RR ++
Sbjct: 241 HGVMRQMVRWA--EGRRKDL 258


>gi|114799978|ref|YP_759896.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114740152|gb|ABI78277.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 248

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 5/236 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           + P IIL  PQLGENIG  AR M NF LT LRLV PRDGWPS  A + SA A      V 
Sbjct: 3   RAPAIILHAPQLGENIGAAARVMLNFGLTDLRLVKPRDGWPSAPAEAMSAGALAQGTQVS 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF  L+EA+  L +  ATTAR R   K+V    +A   L  +  +GQ+  ++FG E+ GL
Sbjct: 63  VFETLEEAMTGLTYTIATTARPRGMEKAVFGAPDAVGALKRQ--AGQSA-VLFGGEKSGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKG 190
            NE +AL +AI+++PVNP F SLN++QAV +    W          +   +    PA + 
Sbjct: 120 PNEAVALCDAILTYPVNPDFSSLNLAQAVGVFCHQWGASAGLEGKFDGTTEGLGAPALRE 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           EL+   ++ E  LE  GYF P EK   M+ +L +  +R +  ++EV   RG +  L
Sbjct: 180 ELIGMFEHFEAELERAGYFYPPEKTPVMVTNLRNALVRAQWTQQEVRTFRGAIKAL 235


>gi|315499510|ref|YP_004088313.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315417522|gb|ADU14162.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 264

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 138/235 (58%), Gaps = 1/235 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +IL  PQ+ ENIG VAR M NF L  LR+V+PRDGWP E+A + S+ A   +D+  ++
Sbjct: 18  PCVILDRPQMAENIGSVARVMANFGLRDLRIVDPRDGWPQERAWAMSSGAHWPLDNATIY 77

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EAIADL+ +YATTAR R     V  P++ A         G   G++FG ER GL  
Sbjct: 78  ETVAEAIADLNAVYATTARPRETQLPVRTPRQCADDSYANAQQGLKTGLLFGAERAGLET 137

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELL 193
            +IAL ++I++ PV+P F SLN+SQAV ++++E  ++      E   K  + PA   +L 
Sbjct: 138 SDIALCHSIVTIPVDPAFHSLNLSQAVNIVLYEWRLKVMDTPKEAFTKNMDQPAALEKLH 197

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               +LE  LE+ G+F P EKK+ M  +L     R +L  +EV   RG+V+ L K
Sbjct: 198 GLYGHLEDELEKAGFFFPPEKKESMQRNLRVALNRAQLTEQEVRTWRGVVTALVK 252


>gi|221368992|ref|YP_002520088.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides KD131]
 gi|221162044|gb|ACM03015.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides KD131]
          Length = 243

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 136/230 (59%), Gaps = 1/230 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV PQ+GENIG  ARAM NF L +LR+V+PRDGWP+ KA + ++ A  ++D   +F
Sbjct: 5   PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EAI D  +++ATTAR R   K V+ P+ A          G+ VGI+FG ER GL N
Sbjct: 65  PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193
           E++AL+NAI++ PVNP F SLN++Q  LL+ +E       +  + +         G E+ 
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCALLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              D+ E  LE  G+F P EK   M  +L +++ R  L R +V  L G++
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGML 234


>gi|332185344|ref|ZP_08387092.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
 gi|332014322|gb|EGI56379.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
          Length = 243

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 9/243 (3%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  ++ PVI+LV PQLGENIG  ARAM NF L ++RLV PRDGWP+ +A  +++ AD V+
Sbjct: 3   QPPSQPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVTPRDGWPNPQAGPAASGADIVL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIF 125
           +  +V+ ++ +A+AD   +YATT R R   K V+ P+EAA     R      VG    +F
Sbjct: 63  EQAKVYESVADAVADCAQVYATTVRKRGVTKPVVTPEEAA-----REIHADTVGRAAFLF 117

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           G ER GL  +++A++  I++ P+NP F SLN++QAV+L+ +E  +   ++      E   
Sbjct: 118 GPERSGLETDDVAIARKIVTVPINPEFGSLNLAQAVILIAYEWSKGVDLAQPPET-ELPP 176

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A + EL   +  LE  L+  GYF P ++       L ++  +P    +EV  LRG++ST
Sbjct: 177 VAPQFELDGMIGQLEEMLDGAGYFFPPDRTPATKRTLRTLLTKPGWSSQEVRTLRGVLST 236

Query: 246 LDK 248
           L +
Sbjct: 237 LAR 239


>gi|83942524|ref|ZP_00954985.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
           sp. EE-36]
 gi|83953745|ref|ZP_00962466.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
           NAS-14.1]
 gi|83841690|gb|EAP80859.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
           NAS-14.1]
 gi|83846617|gb|EAP84493.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
           sp. EE-36]
          Length = 250

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 143/241 (59%), Gaps = 3/241 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+  A + ++ A  ++D   ++
Sbjct: 11  PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPSAVAMASGAGRLLDEAVIY 70

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+ D  F++ATTAR+R+  K V +P+ A     + I  G+ V ++FG ER GL N
Sbjct: 71  DDLAGAVGDAAFVFATTARDRDLTKPVYSPEAAMAKAAQMIREGRRVSVLFGPERAGLEN 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQNTPATKGEL 192
           ++I+ +NAI+S PVNP F SLN++Q VLLM +E M  +  +V+ +  +   +  A   E+
Sbjct: 131 DDISRANAIVSVPVNPAFASLNLAQCVLLMGYEWMRAQGDVVAEQVEMAGTDW-ADNSEI 189

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
                + E  L+  G+F P  K   M  +L +++ R  L R +V  L G +  + ++  +
Sbjct: 190 EHLARHFEDRLDTAGFFYPEHKAASMKINLRNMWSRLPLTRADVQTLHGTLRQMVRWKER 249

Query: 253 S 253
            
Sbjct: 250 G 250


>gi|84687187|ref|ZP_01015068.1| tRNA/rRNA methyltransferase (SpoU) [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664775|gb|EAQ11258.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2654]
          Length = 249

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/230 (40%), Positives = 140/230 (60%), Gaps = 1/230 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAM NF L ++R+V PRDGWP+ KA + ++ A  V+D+  V+
Sbjct: 11  PAFVLVRPQMGENIGAAARAMLNFGLERMRVVGPRDGWPNPKAVAMASGAGRVLDAAVVY 70

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+AD  ++YATTAR+R   K V  P+ A          G+ V ++FG ER GL N
Sbjct: 71  DDLPAALADCDYVYATTARSRELAKPVRTPERAMAEARAMRAEGKRVAVLFGPERAGLEN 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           E+++ +NAII+ PVNP F SLN++Q+VLL  +E    +I ++ + +    T  AT+ E+ 
Sbjct: 131 EDVSRANAIITVPVNPEFASLNLAQSVLLTAYEYGRQTIDAAPEVMSLAKTDFATQVEVE 190

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +  D+ E  L+E G+F P  K   M   L + + R  L R +V +  G++
Sbjct: 191 ALADHFERRLDEVGFFFPETKAAGMKLVLRNAWTRLSLTRADVQMFHGML 240


>gi|94497531|ref|ZP_01304100.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94422948|gb|EAT07980.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 357

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 143/232 (61%), Gaps = 4/232 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVI+LV PQLGENIG  ARAM NF LT++RLV+PRDGWP+  A  ++A AD V+D  +V+
Sbjct: 124 PVIVLVRPQLGENIGKAARAMLNFGLTEMRLVSPRDGWPNPDAGPAAAGADVVLDGAQVY 183

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+AD   +YATT R R   K V+ P+EAA  ++    +G++   +FG ER GL  
Sbjct: 184 ETLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHG--ATGRSA-FVFGPERSGLET 240

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +++AL+  I++ P+NP F SLN++QAV+L  +E  + + + ++  V +   PA + EL  
Sbjct: 241 DDVALARKILTVPINPDFGSLNLAQAVILCAYEWSKQATL-AQPTVTDLGEPAPQDELEG 299

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            +   E  LE  GYF P ++       L ++  +P     EV  LRG++S L
Sbjct: 300 MIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 351


>gi|255264175|ref|ZP_05343517.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
           R2A62]
 gi|255106510|gb|EET49184.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
           R2A62]
          Length = 302

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 148/248 (59%), Gaps = 1/248 (0%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A Q  +    P  +L+ PQ+GENIG  ARAMWNF L ++R+  PRDGWP+  A + ++
Sbjct: 49  PKAQQSASPHPQPSFVLIRPQMGENIGASARAMWNFGLDRMRIAAPRDGWPNPNAVAMAS 108

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  ++D   V+ +  +A+AD  +++ATTAR R   K V++P+ A  +  +++ +G+ V 
Sbjct: 109 GAGRLLDEALVYDSTADAVADCTYVFATTARPRGLTKPVMSPEAAMELAAQKVAAGEKVA 168

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER G+ N++IA +NAIIS PVNP F SLN++Q VLL+ +E            V+ 
Sbjct: 169 VMFGPERAGMENDDIARANAIISVPVNPDFASLNLAQCVLLVGYEWQRQVAQIEHSRVEM 228

Query: 183 QNTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
             T  A + E+    ++ E  L++ G+F P +K   M  +L +++ R  L + +V  L G
Sbjct: 229 IKTDWAEQIEIEKLTEHYEDRLDQAGFFYPEQKADGMKQNLRNLWSRMPLTKADVQTLHG 288

Query: 242 IVSTLDKF 249
           ++  + ++
Sbjct: 289 VLRQMVRW 296


>gi|84501049|ref|ZP_00999284.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
           HTCC2597]
 gi|84391116|gb|EAQ03534.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
           HTCC2597]
          Length = 244

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/244 (37%), Positives = 144/244 (59%), Gaps = 4/244 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV +LV PQ+GENIG  ARAMWNF L ++R+ +PRDGWP++KA + ++ A  ++D   +F
Sbjct: 4   PVFVLVRPQMGENIGAAARAMWNFGLDRMRITSPRDGWPNQKAVAMASGAGRLLDEAGIF 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +   A+ D   ++ATTAR R   K V+ P+ A  +    I  G+ V ++FG ER GL N
Sbjct: 64  DSTAGALQDRTHVFATTARPRGLTKPVVTPERAMEMAAGMIGRGEKVAVLFGPERAGLEN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           +++  +N II+ PVNP FPSLN++Q VLL  +E   +++ ++ +      T  AT  E+ 
Sbjct: 124 DDVVRANTIINVPVNPDFPSLNLAQCVLLCAYEWRRHTVETAPERTDMAGTQWATGIEVE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
               + E  L+E G+F P  K   M  +L +++ R  L + +V  L G+   L +  R  
Sbjct: 184 KLSGHYEERLDEAGFFFPAHKADTMKLNLRNLWSRMPLTQADVQTLHGV---LRQMVRWK 240

Query: 254 SRRN 257
           +RR+
Sbjct: 241 NRRD 244


>gi|91205992|ref|YP_538347.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157826644|ref|YP_001495708.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
 gi|91069536|gb|ABE05258.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157801948|gb|ABV78671.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
          Length = 231

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 149/234 (63%), Gaps = 8/234 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IILV PQ+GENIG  ARAM NF L +LR++ PRDGWP+E+ARS++  A  +ID+ +++
Sbjct: 3   PIIILVAPQMGENIGATARAMKNFGLDELRIITPRDGWPNEQARSNAVGAVNIIDNAKIY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++L+E I DL ++YATT   R   K  +  +     L     S   VGI+FGRE  GL+N
Sbjct: 63  NSLEECIKDLEYLYATTCIKRAINKDYVFSQN----LTSDYPSLAKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEI+L+N II+      F SLNI+QAV+++ +E   NS   S +++      ATK E+  
Sbjct: 119 EEISLANKIITINTTE-FSSLNIAQAVIIVCYELFRNS--ESREDIYNIQKLATKEEIDH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLD 247
           FL +L   L++ G+F+  E+K  M  ++ +IF+R   L   E+ +L+GI+ +L+
Sbjct: 176 FLTHLFGKLDKAGFFKIPERKLIMQQNITNIFMRINNLSTPEIQILQGIIKSLN 229


>gi|83952097|ref|ZP_00960829.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
           nubinhibens ISM]
 gi|83837103|gb|EAP76400.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
           nubinhibens ISM]
          Length = 231

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 142/227 (62%), Gaps = 1/227 (0%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           +GENIG  ARAMWNF L ++RLV+PRDGWP+ KA + ++ A  ++D  ++  ++  A+AD
Sbjct: 1   MGENIGAAARAMWNFGLDRMRLVSPRDGWPNPKAVAMASGAGRLLDEAQLVEDVDAAVAD 60

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F++ATTAR+R   K V  P+ A  +  E+I  G+ V ++FG ER GL N+++A +NAI
Sbjct: 61  TSFVFATTARSREMTKPVYTPEAAMKLAAEKIAGGERVAVLFGPERAGLENDDVARANAI 120

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
           I+ PVNP F SLN++Q VLL+ +E M + S V+  +        A++ E+    ++ E  
Sbjct: 121 INVPVNPQFASLNLAQCVLLVGYEWMRQQSDVAPVQEGLGDTQWASRDEIAKLAEHYEER 180

Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           +EE G+F P  K   M  +L + + R  L + ++ ++ G++  + ++
Sbjct: 181 MEEAGFFFPEHKAANMRRNLRNFWSRMPLTQADIRMMHGVMRQMVRW 227


>gi|294677143|ref|YP_003577758.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
           1003]
 gi|294475963|gb|ADE85351.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
           1003]
          Length = 245

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/240 (43%), Positives = 139/240 (57%), Gaps = 14/240 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRV 73
           PV IL+ PQ+GENIG  ARAM NF L+ LRLV+PRDGWP+ KA + +S  A  V+D   V
Sbjct: 7   PVFILIRPQMGENIGAAARAMLNFALSTLRLVDPRDGWPNPKAVAMASGAAGKVLDHAGV 66

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F    EAIAD  F++ATTAR R   K +  P+ A      RI +GQ VG++FG ER GL 
Sbjct: 67  FPTTAEAIADCDFVFATTARGRELTKPIYTPEAAMAEARARIAAGQRVGVMFGPERTGLE 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG--- 190
           N++I  +NAII+ PVNP F SLN++QAVLL  +E        SE    +   P   G   
Sbjct: 127 NDDIIRANAIITVPVNPEFFSLNLAQAVLLTAYEFARQ---GSEAPAID---PGLAGAEM 180

Query: 191 ----ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               E+    D+ E  L++ G+F P  K   M  +L +++ R  L R +V  L G++  L
Sbjct: 181 ANALEIEKLGDHYEERLDQAGFFFPAGKAPMMKRNLRNMWSRFGLTRADVQTLHGMLRQL 240


>gi|157803305|ref|YP_001491854.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
 gi|157784568|gb|ABV73069.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
          Length = 230

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/233 (41%), Positives = 146/233 (62%), Gaps = 8/233 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IILV PQ+GENIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID+ +++
Sbjct: 3   PIIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNTKIY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL+++I DL ++YATT   R   K  +  +  ++       +   VGI+FGRE  GL+N
Sbjct: 63  DNLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLSL----DYPNSAKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEI+L+N II+      F SLNI+QAV+++ +E   N   +  +++      ATK E+  
Sbjct: 119 EEISLANKIITINTTE-FSSLNIAQAVIIICYELFRN--FTLREDIHNIQKLATKEEIEH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTL 246
           FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV +L+GI+ +L
Sbjct: 176 FLTNLFGKLDKLGFFKAPDKKPAMQQNITNIFTRINNLSSHEVQILQGIIKSL 228


>gi|157828032|ref|YP_001494274.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932730|ref|YP_001649519.1| SpoU family rRNA methylase [Rickettsia rickettsii str. Iowa]
 gi|157800513|gb|ABV75766.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907817|gb|ABY72113.1| rRNA methylase, SpoU family [Rickettsia rickettsii str. Iowa]
          Length = 230

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 146/235 (62%), Gaps = 8/235 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++F
Sbjct: 3   PIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+N
Sbjct: 63  DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEIA +N II+      F SLNI+QAV+++ +E + NS  +  ++V      ATK E+  
Sbjct: 119 EEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIEH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLDK 248
           FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L++
Sbjct: 176 FLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSSEVQTLQGIIKSLNQ 230


>gi|238650706|ref|YP_002916559.1| rRNA methylase [Rickettsia peacockii str. Rustic]
 gi|238624804|gb|ACR47510.1| rRNA methylase [Rickettsia peacockii str. Rustic]
          Length = 230

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 146/235 (62%), Gaps = 8/235 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++F
Sbjct: 3   PIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+N
Sbjct: 63  DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEIA +N II+      F SLNI+QAV+++ +E + NS  +  ++V      ATK E+  
Sbjct: 119 EEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIEH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLDK 248
           FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L++
Sbjct: 176 FLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVPTLQGIIKSLNQ 230


>gi|229586358|ref|YP_002844859.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
 gi|228021408|gb|ACP53116.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
          Length = 230

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 145/235 (61%), Gaps = 8/235 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++F
Sbjct: 3   PIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+N
Sbjct: 63  DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEIA +N II+      F SLNI+QAV+++ +E + NS  +  ++V      ATK E+  
Sbjct: 119 EEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIEH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLDK 248
           FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L +
Sbjct: 176 FLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVQTLQGIIKSLSQ 230


>gi|306440754|pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM
           RHODOBACTER Sphaeroides
          Length = 249

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/233 (40%), Positives = 132/233 (56%), Gaps = 1/233 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV PQ GENIG  ARA  NF L +LR+V+PRDGWP+ KA + ++ A  ++D   +F
Sbjct: 5   PVFILVRPQXGENIGAAARAXLNFGLGRLRIVDPRDGWPNPKAVAXASGAGRLLDHAGLF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EAI D  +++ATTAR R   K V  P+ A          G+ VGI+FG ER GL N
Sbjct: 65  PTVAEAIRDCDYVFATTARGRELTKPVXTPERAXAHGRALTGEGRRVGILFGPERTGLEN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193
           E++AL+NAI++ PVNP F SLN++Q VLL+ +E       +  + +         G E+ 
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDXARVDFASGLEVE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
              D+ E  LE  G+F P EK      +L + + R  L R +V  L G +  +
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGXKLNLRNXWARLPLTRADVQTLHGXLRQI 237


>gi|163741081|ref|ZP_02148473.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
           gallaeciensis 2.10]
 gi|161385434|gb|EDQ09811.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
           gallaeciensis 2.10]
          Length = 232

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/230 (38%), Positives = 140/230 (60%), Gaps = 1/230 (0%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           +GEN+G  ARAMWNF L ++R+V PRDGWP+ KA + ++ A  ++D  R+  +L  AI D
Sbjct: 1   MGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLAEDLAGAIED 60

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F++ATTAR R   K V +P+ A  +  E+I +G+ V ++FG ER GL NE+IA +NAI
Sbjct: 61  CDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLENEDIARANAI 120

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
           IS PVNP F SLN+ Q VLL  +E     + V+       ++  A+  ++ + +++ E  
Sbjct: 121 ISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDWASHADVDALVNHYEDR 180

Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           L++ G+F P +K   M     ++F R  L R +V +L GI+  + ++  +
Sbjct: 181 LDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQMVRWKEK 230


>gi|157964184|ref|YP_001499008.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
 gi|157843960|gb|ABV84461.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
          Length = 233

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 145/235 (61%), Gaps = 8/235 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IIL+ PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++F
Sbjct: 6   PIIILIAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+N
Sbjct: 66  DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEIA +N II+      F SLNI+QAV+++ +E   NS  +  ++V      ATK E+  
Sbjct: 122 EEIAFANKIITINTTK-FSSLNIAQAVIIICYELFRNS--TPREDVHNIQKLATKEEIEH 178

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTLDK 248
           FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L++
Sbjct: 179 FLVNLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSLNQ 233


>gi|67459564|ref|YP_247188.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
 gi|67005097|gb|AAY62023.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
          Length = 231

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/233 (42%), Positives = 144/233 (61%), Gaps = 8/233 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVIILV PQ+GENIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID+ +V+
Sbjct: 3   PVIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNAKVY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ I DL ++YATT   R   K  +  +   +       +   VGI+FGRE  GL+N
Sbjct: 63  DSLEDCIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSAKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEI+L+N II+      F SLNI+QAV+++ +E   NS  +  +++      ATK E+  
Sbjct: 119 EEISLANKIITINTTE-FSSLNIAQAVIIICYELFRNS--TPREDIYNIQKLATKEEIEH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTL 246
           FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L
Sbjct: 176 FLANLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228


>gi|254292954|ref|YP_003058977.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254041485|gb|ACT58280.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 253

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 136/237 (57%), Gaps = 3/237 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S + P IILV PQ+GENIG  AR M NF L  LR++NPRDGWP++KA + SA A      
Sbjct: 6   SNRQPAIILVSPQMGENIGATARVMANFGLKDLRIINPRDGWPNDKADTMSAGAFEWGVE 65

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +VF  L+  +ADL ++ ATTAR R   K V   +E    L  R   G  VG++FG E+ 
Sbjct: 66  AKVFDTLEAGLADLTYVLATTARPRGMEKPVFNAEEGIGALMSRPDVG--VGVMFGAEKA 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPATK 189
           GL NE++AL++ I+++PV+  F SLN++QAV +        ++   ++K        A +
Sbjct: 124 GLLNEDVALADGILTYPVDRSFSSLNLAQAVGVFAHSWAARTLEGEAKKEFAGVGDSADR 183

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            +L+   ++ E  L+  G+F P EK+  M  +L + FIR +   +EV   RG V  L
Sbjct: 184 EQLVRMFEHFEDELDRAGFFFPAEKRPVMTQNLRNAFIRAQWTNQEVQTFRGAVKAL 240


>gi|23008544|ref|ZP_00049946.1| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 155

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 102/139 (73%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D+  V+
Sbjct: 4   PVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDAATVY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + EAIADLH + ATTAR R   K V AP+EA      RI  G+ VG++FGRER GL+N
Sbjct: 64  ATVPEAIADLHHLLATTARERGQMKRVFAPEEAMTATAGRIGRGERVGLMFGRERVGLSN 123

Query: 135 EEIALSNAIISFPVNPLFP 153
           +E++L++AI++FPV   FP
Sbjct: 124 DEVSLADAIVTFPVTEEFP 142


>gi|157825295|ref|YP_001493015.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
 gi|157799253|gb|ABV74507.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
          Length = 231

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 144/233 (61%), Gaps = 8/233 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVIILV PQ+GENIG  ARAM NF L++LR+V PRDGWP+E+ARS++  A  +ID+ +++
Sbjct: 3   PVIILVVPQMGENIGATARAMKNFGLSELRIVAPRDGWPNEQARSNAVGAVNIIDNAKIY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL+E++ DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+N
Sbjct: 63  DNLEESVQDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+AL+N II+      F SLNI+QAV+++ +E   N      +++      ATK E+  
Sbjct: 119 KEVALANKIITINTTE-FSSLNIAQAVIIICYELFRN--FKPREDIHNIQKLATKEEIEH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR-PELMREEVFLLRGIVSTL 246
           FL  L   L++  +F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L
Sbjct: 176 FLTNLFGKLDKARFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228


>gi|15892083|ref|NP_359797.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
 gi|15619205|gb|AAL02698.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
          Length = 221

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/214 (41%), Positives = 133/214 (62%), Gaps = 7/214 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++F
Sbjct: 3   PIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+N
Sbjct: 63  DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEIA +N II+      F SLNI+QAV+++ +E + NS  +  +++      ATK E+  
Sbjct: 119 EEIAFANKIITINTTE-FSSLNIAQAVIIICYELLRNS--TPREDIHNIQKLATKEEIEH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228
           FL  L   L++ G+F+  +KK  M   + +IF R
Sbjct: 176 FLVNLFGKLDKAGFFKAPDKKTAMQQSITNIFTR 209


>gi|114569563|ref|YP_756243.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114340025|gb|ABI65305.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 249

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/238 (39%), Positives = 136/238 (57%), Gaps = 4/238 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           QNSA  P  IL  PQLGENIG  AR M NF L +L +V+PRDGWP++KA + SA +  V+
Sbjct: 3   QNSAT-PAFILHTPQLGENIGAAARVMGNFGLPELVVVDPRDGWPNDKAVTMSAGS-PVL 60

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            + RV   L +AI D   +YATTAR R   K V+  +EA   +   I +G+ V ++FG E
Sbjct: 61  GNARVEYRLGDAIHDTTRLYATTARPRGMEKPVMTAREAVSDMKAAIEAGEKVAVMFGGE 120

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           + GL NE + +++ II+ PV+  F SLN++QAV ++ +E        +E   +  +  A 
Sbjct: 121 KSGLPNEAVNMADVIITLPVDRSFSSLNLAQAVAVIAYEWTAGEGAPAE--FEPVSDVAK 178

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           + +L    ++ E  LE  G+F P  K   M+ +L + FIR     +EV   RG V  L
Sbjct: 179 REDLERMFEHFETELERAGFFHPPSKTPLMVQNLRNAFIRGRWTEQEVRTFRGAVKAL 236


>gi|119713263|gb|ABL97329.1| RNA methyltransferase [uncultured marine bacterium HF10_12C08]
          Length = 245

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 146/243 (60%), Gaps = 17/243 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILVD QL EN+G+VAR+M+NF  T L+LV+P+  WPSEKA + + +A  ++++++V+S+
Sbjct: 8   IILVDTQLPENVGLVARSMYNFGFTNLKLVSPKLEWPSEKALAVAVDAKNIVENIKVYSS 67

Query: 77  LKEAIADLHFIYATTARNRN-------NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           L+EA++D  +    TAR R+       N K +   KE  I          ++G++FG E 
Sbjct: 68  LREALSDSSYSIGYTARLRDMSKQFSDNSKIISEIKEQKI--------NDSIGVVFGGEA 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-AT 188
            GLTN+ ++L    ++   +  F SLN+S AV +  +    + +  +E+ V + + P  +
Sbjct: 120 SGLTNDHLSLITKCVTIDTHENFSSLNLSHAVNVFCYSLF-SQVFKTEQLVDKNSEPHGS 178

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + +L+ F D+LE  LE RG+F+P EK  KM  +L +IF R +L   E+  LRG+V  L +
Sbjct: 179 QNDLMYFFDHLEEELESRGFFQPEEKMPKMKQNLRNIFHRADLSEREIATLRGVVRVLSE 238

Query: 249 FSR 251
           + +
Sbjct: 239 YRK 241


>gi|326387396|ref|ZP_08209005.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208052|gb|EGD58860.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 233

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 137/236 (58%), Gaps = 4/236 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+LV PQLGENIG  ARAM NF LT+LR+V PRDGWP+  A  ++A AD V++   VF 
Sbjct: 1   MIVLVRPQLGENIGKAARAMLNFGLTRLRIVAPRDGWPNPSAGPAAAGADIVLEQAEVFD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD   +YATT R R   K V+ P+ AA  +      GQ   I+FG ER GL  +
Sbjct: 61  TLADAVADCAHVYATTVRKRGVTKPVVTPEAAAREIIAA--PGQ-CAIVFGPERSGLETD 117

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++AL+  II+ P+NP F SLN++QAV+L  +E  +++ +  +   +E   PA + E    
Sbjct: 118 DVALARTIITVPINPEFASLNLAQAVILCAYEWSKHADL-VQPTAEELLPPAPQEEFEGM 176

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
              L   LE  GYF P  +       L ++F +      EV  +RGI++TL +  R
Sbjct: 177 FAQLTTMLEPLGYFEPEIRAPVTRRTLRTMFTKAAWNHLEVRTMRGILTTLARKPR 232


>gi|296534805|ref|ZP_06897156.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296264869|gb|EFH11143.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 278

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 140/247 (56%), Gaps = 3/247 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            + P+I+LV PQL ENIG  ARAM N  L  LRLV PRDGWP E+A   S+ A  ++D+ 
Sbjct: 15  GESPIIVLVRPQLAENIGSTARAMANGGLFHLRLVAPRDGWPQERAWYVSSGAQRILDAA 74

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERW 130
            V   + +A+AD H ++AT  R R+    V   + AA  L +   +      ++FG ER 
Sbjct: 75  TVHETVADAVADCHRVFATCPRPRHVVIPVCTARGAAEELVDICQTRALRSAVLFGPERA 134

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPAT 188
           GL N+++A ++ ++ +P+NP   SLN++QAV+++ +E    ++      + +  +   AT
Sbjct: 135 GLENDDMACADTLVRYPLNPDHMSLNLAQAVMILAYEWWNAAVDRTPPRQLMTNETHVAT 194

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           KGEL +FL+ L   L+  G+   + K+  M+ +L   F R E+  +E+  L G+V+ L +
Sbjct: 195 KGELETFLNRLVSELDASGFLDNLPKRPGMVRNLRHWFQRGEVTEQELRTLHGVVTELSR 254

Query: 249 FSRQSSR 255
              +  R
Sbjct: 255 GRMRRGR 261


>gi|159480144|ref|XP_001698144.1| hypothetical protein CHLREDRAFT_120803 [Chlamydomonas reinhardtii]
 gi|158273642|gb|EDO99429.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 154

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 102/153 (66%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +ILV+PQ GENIG  ARAM NF L  LR+V PRDGWP+  A ++S++A  ++++ R++
Sbjct: 1   PAVILVEPQFGENIGAAARAMKNFGLHDLRVVRPRDGWPNPLAVATSSHAADLLEAARLY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +++ AIADL  +YA TAR R   K  +  K+      +        G++FGRE  GLTN
Sbjct: 61  DSVEAAIADLDRVYAATARTRFMHKPFVTSKQGPADATDVAARMPRAGLMFGRESSGLTN 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           EE+AL+N +++   NP++P LN++QA++ + +E
Sbjct: 121 EEVALANKVLTIEANPVYPVLNLAQAIVCVSYE 153


>gi|294084245|ref|YP_003551003.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663818|gb|ADE38919.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 256

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 8/239 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+IL  PQ+ ENIG  ARAM N  L  LR+V PRDGWP+  A   +A    +I++ +VF
Sbjct: 12  PVVILARPQMAENIGATARAMMNCGLRDLRIVKPRDGWPNPVALPMAAGGKSIIETAQVF 71

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A  D+ F+ A TAR R+       P+     L ++   G+ V ++FG E  GL N
Sbjct: 72  DTLADATHDICFMAAATARQRDMPIRASEPRAIGSELVQKAKKGR-VALLFGPEASGLDN 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191
            E+ L++  +S  +NP +PSLN++QAVLL+ WE      + I   +++    ++      
Sbjct: 131 NEVVLADVAVSAALNPAYPSLNLAQAVLLLAWEWRVAALSDIGDDDRSEPSDDSADDDDA 190

Query: 192 LLSFLDY----LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            +   DY    LE +L++ G+F   E    +  ++ ++  R    R+E+  L GI+  L
Sbjct: 191 PIKERDYFFQRLENALDDSGFFSSTEMAPAVKRNIRALINRATPSRQEIGTLHGIIQAL 249


>gi|34580886|ref|ZP_00142366.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
 gi|28262271|gb|EAA25775.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
          Length = 168

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 104/158 (65%), Gaps = 5/158 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++F
Sbjct: 3   PIIILVTPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIF 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+N
Sbjct: 63  DSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPL----DYPNSEKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           EEIA +  II+      F SLNI+QAV+++ +E + NS
Sbjct: 119 EEIAFATKIITINTTE-FSSLNIAQAVIIICYELLRNS 155


>gi|218671238|ref|ZP_03520909.1| tRNA/rRNA methyltransferase protein [Rhizobium etli GR56]
          Length = 111

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 84/100 (84%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++++ AD VI + 
Sbjct: 12  AEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQATASKADHVIAAT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
           +V+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L
Sbjct: 72  KVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVLAAETL 111


>gi|296284003|ref|ZP_06862001.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 223

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 4/214 (1%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M NF L ++RLV PRDGWP+  A  ++A AD ++D  +VF +  EA+AD   ++ATT R 
Sbjct: 1   MANFGLGEMRLVTPRDGWPNPSAGPAAAGADFILDKAQVFESTAEAVADCAHVFATTVRK 60

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R   K V+ P++AA  ++     G++   +FG ER GL  E++AL+  I++ P++P F S
Sbjct: 61  RGVTKPVVTPEQAADAIHAE--PGRSA-FLFGPERSGLETEDVALARTILTVPIDPEFGS 117

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
           LN++QAV+L  +E  +   ++     ++   PA + EL   + +LE  LE +GYF P  +
Sbjct: 118 LNLAQAVILCAYEWSKRKGLAQPPK-EDLLPPAPQDELEGLIAHLERMLEPKGYFLPESR 176

Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                  L  +  +P     EV  LRG++S+L++
Sbjct: 177 ADATRRTLRGVLTKPGWNHLEVRTLRGVLSSLER 210


>gi|167627612|ref|YP_001678112.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|241668183|ref|ZP_04755761.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876718|ref|ZP_05249428.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597613|gb|ABZ87611.1| rRNA methylase, SpoU family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842739|gb|EET21153.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 249

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 134/240 (55%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+ + R+  N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-AIALSCHATEVVKNARIVPN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+ D+ ++  T+AR R     V  P     K A  +LN+   S + + I+FGRER G
Sbjct: 69  LQEALDDIDYVVGTSARVRR----VSLPIEPISKVATNILNKIQKSDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQ---NTPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + ++ +S  K V E    +  A
Sbjct: 125 LLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQTVEISDLKEVPEYTHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++LD
Sbjct: 185 SVKELQGLYQHFEDSMLQSGFLDK-DKPGHVMDKMRRLFQRSELESQEVNILRGFLTSLD 243


>gi|254456096|ref|ZP_05069525.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083098|gb|EDZ60524.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 237

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 135/241 (56%), Gaps = 10/241 (4%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S+     IL  PQL ENIG  AR M NFN  +L +++P+  +P++K  ++S  A  +I  
Sbjct: 2   SSTNITFILHKPQLSENIGACARGMKNFNFQKLIVIDPKPIFPNDKILATSVGAKNIISK 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +VF NL+ A+ ++ ++ AT+AR RN N K +       I   ++I        +FG E 
Sbjct: 62  SKVFDNLEPALKNIDYVIATSARFRNKNIKHIQLEDLKKIDFTKKI------AFLFGSEA 115

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPA 187
            GL+N E++ +N  +  P NP F SLN+S + L+++ + + + I S   N K+      A
Sbjct: 116 SGLSNNEVSYANYTLQIPTNPDFKSLNLSHS-LIIIAQYVSSIIKSKTSNFKKSKKVKTA 174

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +K E+ +  +    +L+E  +F+P EKK  ML++L +IF + EL  +E  +L  + ++L 
Sbjct: 175 SKKEIHAMTNLCIKNLDEINFFKPKEKKPIMLENLRNIFYKMELSAKETRILASVFASLG 234

Query: 248 K 248
           K
Sbjct: 235 K 235


>gi|94500611|ref|ZP_01307141.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
           RED65]
 gi|94427166|gb|EAT12146.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
           RED65]
          Length = 262

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 139/243 (57%), Gaps = 7/243 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V      NIG  ARAM N  L+ L LV+P D +PSE+A S +A A  +++S RV ++
Sbjct: 25  IVMVRTWHPGNIGAAARAMKNMGLSDLVLVDPVD-YPSEQATSMAAGATDLLESARVVNS 83

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +  AI D   ++AT+AR+R++   +   +EAA  +N+ I  G+ V I+FG ER GL NEE
Sbjct: 84  IDVAIEDCQLVFATSARSRSHPWPIKEVREAAAHINDEIPQGK-VAIMFGPERMGLNNEE 142

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L+   +  P NP +P LN++QAV ++ +E        S+ +++ +  P    EL  F 
Sbjct: 143 LRLAQFHMDIPGNPDYPVLNVAQAVQVVCYELFMAQ--RSQPSIESKEYPQV-AELNKFY 199

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK-FSRQSSR 255
            +LE +L   G+       + ML     +F R    + E+ +LRG++S++DK   RQS+ 
Sbjct: 200 SHLENTLTRAGFIIKAHPGQAML-RFKRLFNRARPEKIELNMLRGVLSSIDKLLERQSNE 258

Query: 256 RNN 258
            N+
Sbjct: 259 SNH 261


>gi|126668572|ref|ZP_01739526.1| rRNA methylase [Marinobacter sp. ELB17]
 gi|126626977|gb|EAZ97620.1| rRNA methylase [Marinobacter sp. ELB17]
          Length = 290

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 17/252 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  L  L +VNPR  +P E + + +A A  V+D+  V  +
Sbjct: 20  IVLVETSHSGNIGAVARAMKNMGLGNLWMVNPRS-FPDETSYARAAGASDVLDTATVVGS 78

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD   +  T+AR R     V+ P +AA         G  V ++FGRE  GL+NEE
Sbjct: 79  LDEALADCVLVMGTSARGRKVPWPVMPPDQAATAAASHCGQG-TVALVFGRENHGLSNEE 137

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-------------- 182
           +   +  I  P NP + SLN++ AV +M +E   + +   E + +               
Sbjct: 138 LQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMSYLKGLESDARRPYLERIAQPGDAGW 197

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
              PA+ G++  F  +L+  LEE  + R  +K ++++  L  +F R ++ + EV +LRG+
Sbjct: 198 DVAPASVGDVEGFFGHLQQVLEEIDFHR-RDKPRQLMARLRRLFQRAKMDQMEVNILRGV 256

Query: 243 VSTLDKFSRQSS 254
           +S + K +  S 
Sbjct: 257 LSAVQKTAGASG 268


>gi|329897042|ref|ZP_08271814.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
 gi|328921482|gb|EGG28868.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
          Length = 258

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 142/255 (55%), Gaps = 6/255 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    NIG VARAM N   T L LV PR  +P E+A   +A+A  V+D  RV + 
Sbjct: 7   IVLVEPSHPGNIGGVARAMKNMGFTNLVLVAPR-RFPDEEATWRAASAADVLDGARVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++EAIAD HF+  T+AR R     +L  + AA+ +      GQ V ++FGRE  GLTN+E
Sbjct: 66  VEEAIADCHFVVGTSARERRIPWPILDSRRAALQIRGEAARGQ-VAMLFGREDRGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTP-ATKGELL 193
           + L +  ++ P +  + SLN++ AV ++ +E    ++  S  E+  +E + P ATK  + 
Sbjct: 125 LKLCDLHVNVPTDEAYRSLNLAMAVQILCYELRMQTLYDSLPERADEEWDAPFATKEAMQ 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
            F ++LE +L +  +  P    ++++  L  ++ R  +   E+ +LRG+++   K   + 
Sbjct: 185 RFYEHLEQTLIDIEFLDP-SAPRQLMTRLQRLYNRMRIDEMELNILRGMLTETQKVVFER 243

Query: 254 SRRNNVLLQKTEKSE 268
           S     L QKT+  E
Sbjct: 244 SALRAKLNQKTDDDE 258


>gi|254369607|ref|ZP_04985618.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022]
 gi|157122561|gb|EDO66696.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022]
          Length = 247

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 135/237 (56%), Gaps = 9/237 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+EA+  + ++  T+AR R     ++ P  K A  +LN+   S + + I+FGRER GL N
Sbjct: 69  LEEALEGVDYVVGTSARVRR-VSLLIEPISKVATSILNKIQKSDEKIAILFGRERTGLLN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPATKG 190
           EE+ +SN     P N  + SLN++QAV L+ +E  + +I +S  K V E N     A+  
Sbjct: 128 EELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKASVK 187

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 188 ELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|331005926|ref|ZP_08329274.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
 gi|330420282|gb|EGG94600.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
          Length = 276

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 139/259 (53%), Gaps = 13/259 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  LT+L LV+P+D +PSE+A   ++NA  V+ S  V   
Sbjct: 21  IVLVNTSHPGNIGGVARAMKNMGLTELYLVSPKD-YPSERAEWRASNALDVLQSATVVDT 79

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           L +AIAD   +  T+AR R     ++ P+E A    +R +   S   V I+FGRE  GLT
Sbjct: 80  LDDAIADCGLVIGTSARARRIPWPLVTPRECA----DRSYHESSTHPVAIVFGREDRGLT 135

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATK 189
           NEE+   N  +  P NP + SLN++ AV ++ +E    C+ N              PA  
Sbjct: 136 NEELHKCNYHVHIPSNPDYSSLNLAAAVQVIAYEVRMTCLNNQQGKPIHFDDWDMPPAKN 195

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             L  + ++L+ +LE+ G+  P E  ++ +  L  ++ R  L   E+ +LRG+++ +  F
Sbjct: 196 NALEHYYEHLQSTLEKVGFLEP-ENPRQTMTRLRRLYSRVRLDEMELNILRGVLTAMQNF 254

Query: 250 SRQSSRRNNVLLQKTEKSE 268
             ++ ++ N L  +T + +
Sbjct: 255 VYRTEKKLNDLEVRTNEDK 273


>gi|71907312|ref|YP_284899.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
 gi|71846933|gb|AAZ46429.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
          Length = 254

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 7/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P    NIG  ARAM    L+ L LV P+  +P  +A + +  A  V+    V  +
Sbjct: 12  VVLCRPSHPGNIGAAARAMKTMGLSSLYLVTPKQ-FPDPEADTRATGAVDVLARATVTGS 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LKEA+A   F  A +AR R+    + AP+E    L     +G +V ++FG E  GLTNEE
Sbjct: 71  LKEALAGTAFAVALSARQRDIGPVLGAPRETVARLITEAAAGSDVALVFGNETVGLTNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-----ATKGE 191
           I    A ++ P NP F SLN+  AV ++ +EC   + +     V+   TP     AT  E
Sbjct: 131 ILHCQAAVTIPTNPDFSSLNLGSAVQVLCYECRMAAFLEKPPVVEPGVTPFASPVATHDE 190

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           +     +LE  + + G++ P E+  ++   L  +F R  L ++E+ +LRGI+++
Sbjct: 191 IEGLYGHLETIMTDSGFYNP-EQPGRLFPKLRRLFGRVRLEKDEINILRGILAS 243


>gi|117924869|ref|YP_865486.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
 gi|117608625|gb|ABK44080.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
          Length = 258

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 5/234 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV IL  P  G N+G   RA+ N     LRLV PR  +P     + +A     I +++V
Sbjct: 12  GPVFILDHPSHGGNVGAALRAITNMGFEHLRLVRPR-FFPHPDVEAWAAGTAARIPTIQV 70

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGL 132
           F +L  A ADL+ + A T R R     V++P+E  + L+ ++  +   VGI+FG ER GL
Sbjct: 71  FDSLDAATADLNHLVAVTRRGRGQRHQVMSPRELGVRLDPKQQLASSRVGILFGTERTGL 130

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPATKG 190
              ++   + I + P +    SLN+SQAV+L+ +E M    +      + +  +  A++ 
Sbjct: 131 ETADVERCHWICTIPTHGEKGSLNLSQAVMLVAYELMLGQGLGEVPVHDPQRDDALASQD 190

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
           E++ F D+L+  L +  + +P ++ K+M+  L ++F R  L R E+ +LRGI++
Sbjct: 191 EMVRFFDHLQDVLMQIDFIQP-DRYKQMMGTLKALFNRAALDRREITILRGILT 243


>gi|88797963|ref|ZP_01113550.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
 gi|88779160|gb|EAR10348.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
          Length = 239

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 12/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L+      NIG  ARAM N  L+ L LV+P D +PS++A S +  A  +++   V + 
Sbjct: 7   IVLIRTWHAGNIGATARAMKNMGLSNLVLVDPVD-FPSDEATSRAGQAVDLLEQANVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQN-VGIIFGRERWGLT 133
           L+EAIAD + +  T+AR+R    S+  P   A    E+    S Q  V I+FGRER GL+
Sbjct: 66  LEEAIADCNLVIGTSARDR----SIRLPALTAEACAEKACRESDQGTVAIVFGRERMGLS 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-EL 192
           NEEI   +  ++   NP +P LN+SQAV L+ WE  +  + SSE   +    P  +  EL
Sbjct: 122 NEEIQQCHFQLNIATNPEYPVLNLSQAVQLVAWEVFK--VASSETPPESDVEPYPRQREL 179

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
             F  +L  + E  G+  P    + M D L ++F R    R+E+ +LRG +S++D+ +
Sbjct: 180 EQFYQHLAKTSEATGFLNPAHPGQVM-DHLRALFRRARPTRKELSILRGFLSSIDQHT 236


>gi|51102914|gb|AAT96063.1| group 1 trmH family protein [Pseudomonas viridiflava]
          Length = 255

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 135/242 (55%), Gaps = 9/242 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L+      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLIGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ + + + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALTGCRLVLGTSARDRSLPWPMLDPRASGVKVVEQAGQGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-------ATK 189
           +   +  +  P +P F SLN++ AV ++ +E   + + +SE+   ++++        AT 
Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMSWLAASEQPAHDESSKMAHNAELATM 185

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E+  F  +LE +L   G+  P EK + ++  L  +F R E+   E+ +LRGI++   K 
Sbjct: 186 DEMEGFYGHLEATLVAIGFLDP-EKPRHLMARLRRLFGRSEVEHSELSILRGILTETQKA 244

Query: 250 SR 251
           +R
Sbjct: 245 AR 246


>gi|3046324|gb|AAC24483.1| unknown [Azotobacter vinelandii]
          Length = 257

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 133/244 (54%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV P D +PS +A + ++ A  ++D+ +V + 
Sbjct: 7   VVLVNTSHPGNIGGAARAMRNMGLSRLYLVAPED-FPSSEAVARASGATDILDNAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+        T+AR+R     +L P+E A    E++  G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NTPA 187
           +      +  P +P F SLN++ AV ++V+E     + +     K++         + PA
Sbjct: 126 LQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAMLNSQPA 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  F  +LE +L E G+  P EK + ++  L  ++ R  + + E+ +LRGI++   
Sbjct: 186 TMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGILTETQ 244

Query: 248 KFSR 251
           K +R
Sbjct: 245 KAAR 248


>gi|104780226|ref|YP_606724.1| TrmH family tRNA methyltransferase [Pseudomonas entomophila L48]
 gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1
           [Pseudomonas entomophila L48]
          Length = 251

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 131/241 (54%), Gaps = 10/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV P+  +PS +A + ++ AD ++D+V+V   
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPK-AFPSAEASARASGADDLLDNVQVVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+     +  T+AR R+    ++ P+E           G+ + ++FGRE  GLTNEE
Sbjct: 66  LEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVTHAVGGEEIALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVSSEKNVKEQNTPATKG 190
           +   +  +  P NP F SLN++ AV +      M W   + +    EK   + +  AT  
Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAGQGAATKVEK--VDASELATMD 183

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+  F D+LE +L + G+  P EK K ++  L  ++ R  + R E+ +LRGI++   K +
Sbjct: 184 EMELFYDHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQKVA 242

Query: 251 R 251
           R
Sbjct: 243 R 243


>gi|226946081|ref|YP_002801154.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
 gi|226721008|gb|ACO80179.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
          Length = 258

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV P D +PS +A + ++ A  ++D+ +V + 
Sbjct: 8   VVLVNTSHPGNIGGAARAMRNMGLSRLYLVAPED-FPSSEAVARASGATDILDNAQVVAT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+        T+AR+R     +L P+E A    E++  G  V ++FGRE  GLTNEE
Sbjct: 67  LEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNT-----PA 187
           +      +  P +P F SLN++ AV ++V+E     +    V S++   E        PA
Sbjct: 127 LQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAMLNSQPA 186

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  F  +LE +L E G+  P EK + ++  L  ++ R  + + E+ +LRGI++   
Sbjct: 187 TMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGILTETQ 245

Query: 248 KFSR 251
           K +R
Sbjct: 246 KAAR 249


>gi|208779944|ref|ZP_03247288.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida
           FTG]
 gi|208744399|gb|EDZ90699.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida
           FTG]
          Length = 247

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 135/240 (56%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P     K A  +LN+   S + + I+FGRER G
Sbjct: 69  LEEALEGVDYVVGTSARVR----RVSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + +I +S+ K V E N     A
Sbjct: 125 LLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|170723500|ref|YP_001751188.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169761503|gb|ACA74819.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           W619]
          Length = 251

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 130/241 (53%), Gaps = 10/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  LT+L LV P++ +P+  A + ++ AD V+   +V  +
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLTRLVLVQPKE-FPAADASARASGADDVLAGAQVVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+     +  T+AR R+    ++ P+E      E    G+ + ++FGRE  GLTNEE
Sbjct: 66  LEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVEHAVGGEEIALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVSSEKNVKEQNTPATKG 190
           +   +  +  P NP F SLN++ AV +      M W   E +    EK   + +  AT  
Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAEGTAQKVEK--ADASELATMD 183

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+  F ++LE +L + G+  P EK K ++  L  ++ R  + R E+ +LRGI++   K +
Sbjct: 184 EMELFYEHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQKVA 242

Query: 251 R 251
           R
Sbjct: 243 R 243


>gi|71083833|ref|YP_266553.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062946|gb|AAZ21949.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 237

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 129/233 (55%), Gaps = 8/233 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL  PQL ENIG  ARA+ NFN  +L +V P+  +P++K  ++S  A  +I + +V   L
Sbjct: 9   ILHQPQLSENIGACARAVKNFNFKKLVIVKPKPIFPNDKILATSVGAKDLIINAKVHETL 68

Query: 78  KEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + A+  + ++ AT+AR RN N K +       I  N++I        +FG E  GL+N E
Sbjct: 69  ESAVKKVDYVVATSARFRNKNIKHINLDDLKKIDFNKKI------AFLFGSEASGLSNNE 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLSF 195
           I+ +N  +  P NP F SLN+S +V+++         +   K  K +    A+K ++ + 
Sbjct: 123 ISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGAKYSKSKKVNLASKKDIQAM 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +     LEE+ +F+P+EK+  ML++L SIF + EL  +E  +L  + ++L K
Sbjct: 183 TNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSK 235


>gi|91763130|ref|ZP_01265094.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717543|gb|EAS84194.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 237

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 134/236 (56%), Gaps = 14/236 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL  PQL ENIG  ARA+ NFN  +L +V P+  +P++K  ++S  A  +I + +V   L
Sbjct: 9   ILHQPQLSENIGACARALKNFNFKKLVIVKPKPIFPNDKILATSVGAKNLIINAKVHETL 68

Query: 78  KEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + A+  +  + AT+AR RN N K +       I  N++I        +FG E  GL+N E
Sbjct: 69  ESAVKKVDCVIATSARFRNKNIKHINLDDLKKIDFNKKI------AFLFGSEASGLSNNE 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATKGEL 192
           I+ +N  +  P NP F SLN+S +V+++       SI++  K VK    ++ T A+K ++
Sbjct: 123 ISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVA--SIINL-KGVKYSKSKKVTLASKKDI 179

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +  +     LEE+ +F+P+EK+  ML++L SIF + EL  +E  +L  + ++L K
Sbjct: 180 QAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSK 235


>gi|56708339|ref|YP_170235.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670810|ref|YP_667367.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457463|ref|ZP_03665936.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370961|ref|ZP_04986965.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875161|ref|ZP_05247871.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604831|emb|CAG45912.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321143|emb|CAL09295.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569203|gb|EDN34857.1| hypothetical protein FTBG_01707 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841160|gb|EET19596.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159576|gb|ADA78967.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 247

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P     K A  +LN+   S + + I+FGRER G
Sbjct: 69  LEEALEGVDYVVGTSARVRR----VSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + +I +S  K V E N     A
Sbjct: 125 LLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|146283375|ref|YP_001173528.1| methyltransferase [Pseudomonas stutzeri A1501]
 gi|145571580|gb|ABP80686.1| probable methyltransferase [Pseudomonas stutzeri A1501]
 gi|327481767|gb|AEA85077.1| methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 278

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV+P D +PS  A + ++ A  ++DS +V + 
Sbjct: 28  VVLVNTSHAGNIGGAARAMKNMGLSRLVLVDPED-FPSPDAVARASGATDILDSAQVVAT 86

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R     +L P+E A V  E+  +G +V ++FGRE  GLTNEE
Sbjct: 87  LEEALVGCSLVLGTSARDRRIPWPLLDPRECAAVSVEQAAAGSDVALVFGREYAGLTNEE 146

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVSSEK---NVKEQNTPA 187
           +      +  P +P F SLN++ AV +      M W   E      EK          P 
Sbjct: 147 LQRCQYHVHIPSDPQFSSLNLAAAVQVLTYEVRMAWLAAEGRPTKVEKLETTAMLDAQPV 206

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL ++  +LE +L + G+  P  K + ++  L  ++ R  + + E+ +LRGI++   
Sbjct: 207 TVDELENYFGHLEQTLVDIGFLDPA-KPRHLMPRLRRLYGRSGISKLEMNILRGILTETQ 265

Query: 248 KFSR 251
           K +R
Sbjct: 266 KAAR 269


>gi|134301622|ref|YP_001121590.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187931770|ref|YP_001891755.1| rRNA methylase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049399|gb|ABO46470.1| RNA methyltransferase, TrmH/SpoU family, group 1 [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|187712679|gb|ACD30976.1| rRNA methylase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 247

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P E     A  +LN+   S + + I+FGRER G
Sbjct: 69  LEEALEGVDYVVGTSARVRR----VSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + +I +S  K V E N     A
Sbjct: 125 LLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|330957512|gb|EGH57772.1| RNA methyltransferase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 254

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 8/241 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L +L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLARLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ A   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPMLDPRGAGEKVIEQAGEGAEVALVFGREHSGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194
           +   +  +  P +P F SLN++ AV ++ +E     +  SE+    +   A   EL +  
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRMAWLAVSERGEAPKTASAHSAELATMD 185

Query: 195 ----FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
               F  +LE +L + G+  P EK + ++  L  +F R E+ R E+ +LRG+++   K +
Sbjct: 186 EMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQKVA 244

Query: 251 R 251
           R
Sbjct: 245 R 245


>gi|254374689|ref|ZP_04990170.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548]
 gi|151572408|gb|EDN38062.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548]
          Length = 247

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P     K A  +LN+   S + + I+FGRER G
Sbjct: 69  LEEALEGVDYVVGTSARVR----RVSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + ++ +S+ K V E N     A
Sbjct: 125 LLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|62258308|gb|AAX77781.1| unknown protein [synthetic construct]
          Length = 282

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 135/245 (55%), Gaps = 18/245 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 36  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 94

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P E     A  +LN+   S + + I+FGRER G
Sbjct: 95  LEEALEGVDYVVGTSARVRR----VSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 150

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTPATKG 190
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + +I +S  K V E N    K 
Sbjct: 151 LLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKA 210

Query: 191 ---ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL- 246
              EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L 
Sbjct: 211 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 269

Query: 247 --DKF 249
             DK+
Sbjct: 270 NQDKY 274


>gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24982250|gb|AAN66464.1|AE016275_9 RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           KT2440]
          Length = 251

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+D+ +V  +
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNAQVVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+   + +  T+AR R+    ++ P+E      E    G+ + ++FGRE  GLTNEE
Sbjct: 66  LEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192
           +   +  +  P NP F SLN++ AV ++ +E     + + E   K +       AT  E+
Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELATMDEM 185

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             F D+LE +L   G+  P EK K ++  L  ++ R  + R E+ +LRGI++   K  R
Sbjct: 186 ELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 243


>gi|218663166|ref|ZP_03519096.1| glutamate racemase [Rhizobium etli IE4771]
          Length = 450

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%)

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           AA  L  +  +G+  GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +
Sbjct: 20  AAETLRTKFRAGEATGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSY 79

Query: 167 ECMENSIVSSEK---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
           E M++ +   E       EQ  P+TK +L    D LE +L+ R YF P  KK KM+D+L 
Sbjct: 80  EWMKSGMEDLEAVPFQALEQR-PSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLR 138

Query: 224 SIFIRPELMREEVFLLRG 241
           ++  R     +E+ +LRG
Sbjct: 139 AVLSRRAFTEQEISVLRG 156


>gi|89256502|ref|YP_513864.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314934|ref|YP_763657.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502613|ref|YP_001428678.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254367834|ref|ZP_04983854.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|290953971|ref|ZP_06558592.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312648|ref|ZP_06803398.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144333|emb|CAJ79620.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129833|gb|ABI83020.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253644|gb|EBA52738.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|156253216|gb|ABU61722.1| RNA methyltransferase, TrmH family, group 1protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 247

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 134/240 (55%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDYE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P     K A  +LN+   S + + I+FGRER G
Sbjct: 69  LEEALEGVDYVVGTSARVRR----VSLPIEPISKVATSILNKIQKSDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + +I +S  K V E N     A
Sbjct: 125 LLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|148546113|ref|YP_001266215.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148510171|gb|ABQ77031.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida F1]
          Length = 279

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+D+ +V  +
Sbjct: 35  VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNAQVVDS 93

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+   + +  T+AR R+    ++ P+E      E    G+ + ++FGRE  GLTNEE
Sbjct: 94  LEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHAKGGEEIALVFGREHAGLTNEE 153

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192
           +   +  +  P NP F SLN++ AV ++ +E     + + E   K +       AT  E+
Sbjct: 154 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELATMDEM 213

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             F D+LE +L   G+  P EK K ++  L  ++ R  + R E+ +LRGI++   K  R
Sbjct: 214 ELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 271


>gi|313497208|gb|ADR58574.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
          Length = 283

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+D+ +V  +
Sbjct: 39  VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNAQVVDS 97

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+   + +  T+AR R+    ++ P+E      E    G+ + ++FGRE  GLTNEE
Sbjct: 98  LEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTNEE 157

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192
           +   +  +  P NP F SLN++ AV ++ +E     + + E   K +       AT  E+
Sbjct: 158 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPRKVEKVDAAELATMDEM 217

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             F D+LE +L   G+  P EK K ++  L  ++ R  + R E+ +LRGI++   K  R
Sbjct: 218 ELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 275


>gi|167031897|ref|YP_001667128.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166858385|gb|ABY96792.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           GB-1]
          Length = 251

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 6/239 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+D+  V  +
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNALVVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+   + +  T+AR R+    ++ P+E      E    G+ + ++FGRE  GLTNEE
Sbjct: 66  LEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----GEL 192
           +   +  +  P NP F SLN++ AV ++ +E     + + E   K +   AT+     E+
Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPEKVEKVDATELATMDEM 185

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             F D+LE +L   G+  P EK K ++  L  ++ R  + R E+ +LRGI++   K  R
Sbjct: 186 ELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 243


>gi|303252841|ref|ZP_07339000.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247831|ref|ZP_07529867.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648271|gb|EFL78468.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855633|gb|EFM87800.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 243

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 140/238 (58%), Gaps = 14/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D+ ++F +
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++AIAD   +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER GLTNEE
Sbjct: 68  FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190
           +   +  ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+ 
Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 186 -LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|28868627|ref|NP_791246.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851865|gb|AAO54941.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331019394|gb|EGH99450.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 257

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 133/245 (54%), Gaps = 13/245 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  LT+L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           +   +  +  P +P F SLN++ AV ++ +E +  + +++     E  TP          
Sbjct: 126 LQRCHFHVHIPSDPTFSSLNLAAAVQVLSYE-VRMAWLAASVQADEGETPKVASAHNAEL 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+  F  +LE +L   G+  P EK + ++  L  +F R E+ R E+ +LRG+++  
Sbjct: 185 ATMDEMEGFYGHLETTLVNIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTET 243

Query: 247 DKFSR 251
            K +R
Sbjct: 244 QKAAR 248


>gi|165976260|ref|YP_001651853.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307250079|ref|ZP_07532042.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|165876361|gb|ABY69409.1| probable tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306857876|gb|EFM89969.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 242

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 140/238 (58%), Gaps = 14/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D+ ++F +
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++AIAD   +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER GLTNEE
Sbjct: 68  FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190
           +   +  ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+ 
Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 186 -LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|148359291|ref|YP_001250498.1| RNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296107338|ref|YP_003619038.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|148281064|gb|ABQ55152.1| RNA methyltransferase [Legionella pneumophila str. Corby]
 gi|295649239|gb|ADG25086.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610445|emb|CBX00016.1| hypothetical protein LPW_17721 [Legionella pneumophila 130b]
          Length = 257

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 133/246 (54%), Gaps = 6/246 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+ L LVNP+  +P  KA+  +A AD V+D+  V + 
Sbjct: 8   IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAAVVTNT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     I  T+AR R      L P   A ++N++  + Q V I+FGRE  GLTNEE
Sbjct: 67  LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQ-VAIVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  I+ P NP + SLN++QAV ++ +E     +  S +       PAT  E+  F 
Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADEIEQFY 185

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK---FSRQS 253
           ++L+    E  + +P    ++++  +  +F R  L + EV +LRG++S + K   ++R+ 
Sbjct: 186 EHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLEWARKD 244

Query: 254 SRRNNV 259
           +R N +
Sbjct: 245 NRSNKI 250


>gi|217970682|ref|YP_002355916.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
 gi|217508009|gb|ACK55020.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
          Length = 245

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 3/227 (1%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG  ARAM    L +L LV P + +P E A + ++ A  ++D+ RV   L+EA+AD  F
Sbjct: 22  NIGAAARAMKTMGLRELWLVAP-ESFPDEVATARASGAADLLDAARVVGTLEEALADTVF 80

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
             A TAR R      L  ++AA+ L  R   G  V ++FG E  GLTNEE AL +  ++ 
Sbjct: 81  SAALTARRRELSLPRLQARDAALELVRRTQDGA-VALVFGNETSGLTNEEAALCSLPVTI 139

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206
           P +  F SLN+  AV ++ +E    ++  +      Q  PAT  +   F+ +LE ++   
Sbjct: 140 PTDAGFSSLNLGAAVQVLAYELRMAALGDAAAPADPQPEPATHADFEGFMAHLERAVTAS 199

Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           G+  P    K++L  +  +F R  L REEV LLRG+++T +   R+ 
Sbjct: 200 GFHDPA-NPKRLLPRMRRLFNRVRLEREEVALLRGMLTTFETPRRRG 245


>gi|322514554|ref|ZP_08067587.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Actinobacillus ureae ATCC 25976]
 gi|322119493|gb|EFX91580.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Actinobacillus ureae ATCC 25976]
          Length = 243

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/245 (34%), Positives = 142/245 (57%), Gaps = 14/245 (5%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           NS     IIL++  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D
Sbjct: 2   NSLDQIQIILIETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEQGK-VAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQ 183
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E+
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLELQKNPQIRPLVEEK 178

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           + P T+  L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++
Sbjct: 179 DYPNTEA-LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGML 233

Query: 244 STLDK 248
           ++++K
Sbjct: 234 TSVEK 238


>gi|237748613|ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229379975|gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 257

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 134/242 (55%), Gaps = 14/242 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           ILV      N+G  ARA+     ++L LV PR  D    E+A + ++ A  ++++  +  
Sbjct: 17  ILVGTSHPGNVGAAARAIKTMGFSRLVLVKPRFGDVLKQEEAIAFASGAQDILENALIVE 76

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLT 133
            L+EA+ D HF  A +AR R     +  P++ A    + IF+G+  N  ++FG ER+GL+
Sbjct: 77  TLEEALEDCHFAAALSARLREFSPPIFTPRQFA----DNIFTGEHANCALVFGSERYGLS 132

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPAT 188
           NE++   +A+I+ P NP + SLN++QA+ ++ +EC      + ++ + ++++     PA+
Sbjct: 133 NEDVEQCHALINIPANPDYSSLNLAQAIQILAYECRMAILDKENLPTRDEHIGFHGEPAS 192

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++     +LE +L   G+  P +  KK++  L  +F R  L  EEV +LRGI   ++K
Sbjct: 193 VDQINRMFIHLETALTTIGFLNP-DNPKKLMPRLRRLFSRSSLETEEVNILRGIARQIEK 251

Query: 249 FS 250
            S
Sbjct: 252 QS 253


>gi|54297660|ref|YP_124029.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
 gi|53751445|emb|CAH12863.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
          Length = 257

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 133/246 (54%), Gaps = 6/246 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+ L LVNP+  +P  KA+  +A AD V+D+  V + 
Sbjct: 8   IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAAVVTNT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     I  T+AR R      L P   A ++N++  + Q V I+FGRE  GLTNEE
Sbjct: 67  LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQ-VAIVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  I+ P NP + SLN++QAV ++ +E     +  S +       PAT  E+  F 
Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADEIEQFY 185

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK---FSRQS 253
           ++L+    E  + +P    ++++  +  +F R  L + EV +LRG++S + K   ++R+ 
Sbjct: 186 EHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLEWARKD 244

Query: 254 SRRNNV 259
           +R N +
Sbjct: 245 NRSNRI 250


>gi|118497879|ref|YP_898929.1| rRNA methylase [Francisella tularensis subsp. novicida U112]
 gi|194323852|ref|ZP_03057628.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis
           subsp. novicida FTE]
 gi|118423785|gb|ABK90175.1| rRNA methylase, SpoU family [Francisella novicida U112]
 gi|194322216|gb|EDX19698.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis
           subsp. novicida FTE]
          Length = 247

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P E     A  +L++   S + + I+FGRER G
Sbjct: 69  LEEALEGVDYVVGTSARVR----RVSLPIEPISKIATNILSKIQESDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + +I +S+ K V E N     A
Sbjct: 125 LLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|254447029|ref|ZP_05060496.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           HTCC5015]
 gi|198263168|gb|EDY87446.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 5/238 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++V     ENIG VARAM N  L  L LV PRD WPS+ AR+ +A A  V+D++ +  +
Sbjct: 3   VVMVRTFQSENIGAVARAMKNMGLNDLVLVAPRD-WPSDVARNRAAGAVDVLDNIALADS 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++EAIAD H++ AT+AR R     +   +++      R   GQ V I+ G ER GL ++ 
Sbjct: 62  VEEAIADCHWVVATSARRRGYEWPMSNARQSMSEAYRRSQEGQQVAILLGPERSGLDSDS 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPA-TKGELL- 193
           + L +       NP +P LN++QA  ++ +E  + S    E     + N P   K E + 
Sbjct: 122 LRLCDQHCYISANPDYPVLNVAQAAQVLTYELYQASEAGGELPETPDSNRPRYPKHEAVE 181

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            F  +LE +L   G+ RP E     L  L  +  + ++   E+ +LRGI+S +++  R
Sbjct: 182 HFYQHLESALTHIGFLRP-EHPGDTLVKLRRLLTKAQIEDSELNMLRGILSAIERLER 238


>gi|54294634|ref|YP_127049.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
 gi|53754466|emb|CAH15950.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
          Length = 257

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 132/242 (54%), Gaps = 4/242 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+ L LVNP+  +P  KAR  +A AD V+D+  V + 
Sbjct: 8   IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAREMAAGADDVLDAAVVTNT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     I  T+AR R      L P   A ++N++  + Q V I+FGRE  GLTNEE
Sbjct: 67  LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQ-VAIVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  I+ P NP + SLN++QAV ++ +E     +  S +       PAT  E+  F 
Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADEIEQFY 185

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
           ++L+    E  + +P    ++++  +  +F R  L + EV +LRG++S + K S + +R+
Sbjct: 186 EHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQK-SLEWARK 243

Query: 257 NN 258
           +N
Sbjct: 244 DN 245


>gi|332678594|gb|AEE87723.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida Fx1]
          Length = 247

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 133/240 (55%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P     K A  +L++   S + + I+FGRER G
Sbjct: 69  LEEALEGVDYVVGTSARVR----RVSLPIEPISKVATNILSKIQKSDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + ++ +S  K V E N     A
Sbjct: 125 LLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKEVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+     K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMVQSGFLDK-NKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|307254675|ref|ZP_07536503.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259119|ref|ZP_07540849.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306862348|gb|EFM94314.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866786|gb|EFM98644.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 243

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 140/238 (58%), Gaps = 14/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    L+ LRLV+P +    E++++ +A A  V+D+ ++F +
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQSQALAAGAKDVLDNAQIFDS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++AIAD   +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER GLTNEE
Sbjct: 68  FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190
           +   +  ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+ 
Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 186 -LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|52841974|ref|YP_095773.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629085|gb|AAU27826.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 257

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 4/242 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+ L LVNP+  +P  KA+  +A AD V+D+  V + 
Sbjct: 8   IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKS-FPDLKAKEMAAGADDVLDAAVVTNT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     I  T+AR R      L P   A ++N++  + Q V I+FGRE  GLTNEE
Sbjct: 67  LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSGNTQ-VAIVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  I+ P NP + SLN++QAV ++ +E     +  S +       PAT  E+  F 
Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADEIEQFY 185

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
           ++L+    E  + +P    ++++  +  +F R  L + EV +LRG++S + K S + +R+
Sbjct: 186 EHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQK-SLEWARK 243

Query: 257 NN 258
           +N
Sbjct: 244 DN 245


>gi|332184413|gb|AEE26667.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida 3523]
          Length = 249

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 132/240 (55%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+ + ++ +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-AIALSCHATEVVKNAKIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWG 131
           L EA+  + ++  T+AR R     V  P     K A  +L++   S + V I+FGRER G
Sbjct: 69  LVEALEGVDYVVGTSARVR----RVSLPIEPISKVATNILSKIQKSDEKVAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L NEE+ +SN     P N  + SLN++QAV L+ +E  + ++ +S  K V E N     A
Sbjct: 125 LLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKQVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+     K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMVQSGFLDK-NKPGHVMDKIRRLFQRSELESQEVNILRGFLTSLN 243


>gi|46143391|ref|ZP_00135323.2| COG0565: rRNA methylase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208319|ref|YP_001053544.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20]
 gi|126097111|gb|ABN73939.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 243

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 140/238 (58%), Gaps = 14/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D+ ++F +
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++AIAD   +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER GLTNEE
Sbjct: 68  FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190
           +   +  ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+ 
Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  F ++ E   ++ G+   +     ML  L  ++ R EL   E+ LLRG++++++K
Sbjct: 186 -LEHFFNHTERLYKQLGF---IHNDAVML-KLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|167854979|ref|ZP_02477754.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis
           29755]
 gi|167853936|gb|EDS25175.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis
           29755]
          Length = 242

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 133/235 (56%), Gaps = 7/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL++     NIG  ARAM    L++LRLV P+     E+A + +A A  V+D+V+++++
Sbjct: 8   IILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQAI-DEQAIALAAGAKDVLDNVQIYAD 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +  AIAD   +  T+AR R+   S++ P++   +  +R   G+ V I+FGRER GLTNEE
Sbjct: 67  IDSAIADCQLVIGTSARLRHLQNSLVEPRQCGKLAIQRAEQGK-VAIVFGRERVGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGELLSF 195
           +   +  ++FP NP + SLN++ AV L  +E     +   EK +++      T   L  F
Sbjct: 126 LLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSEALEHF 185

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
             + E   +E G+ R     + ++  L  ++ R EL   E+ LLRG+++ ++K+S
Sbjct: 186 FAHTERLYKELGFIR----NEAVMLKLRRLYQRAELETNELNLLRGMLTAVEKYS 236


>gi|330975889|gb|EGH75955.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 254

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 132/241 (54%), Gaps = 8/241 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKEQNTP-ATKG 190
           +   +  +  P +P F SLN++ AV ++ +E     + ++E+          N   AT  
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQGEAFRPASAHNAELATMD 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+  F  +LE +L   G+F P EK + ++  L  ++ R E+ R E+ +LRG+++   K +
Sbjct: 186 EMEGFYIHLEATLVAIGFFDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQKAA 244

Query: 251 R 251
           R
Sbjct: 245 R 245


>gi|330872894|gb|EGH07043.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 257

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L +L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLARLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTP-----A 187
           +   +  +  P +P F SLN++ AV ++ +E     +  S+ + +    +  +      A
Sbjct: 126 LQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQAGQGEAPKATSAHNAELA 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F  +LE +L + G+  P EK + ++  L  +F R E+ R E+ +LRG+++   
Sbjct: 186 TMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQ 244

Query: 248 KFSR 251
           K +R
Sbjct: 245 KAAR 248


>gi|330936999|gb|EGH41095.1| RNA methyltransferase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 254

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 12/243 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------AT 188
           +   +  +  P +P F SLN++ AV ++ +E     + ++E+   E + P        AT
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQG--EASRPASAHNAELAT 183

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++   K
Sbjct: 184 MDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQK 242

Query: 249 FSR 251
            +R
Sbjct: 243 AAR 245


>gi|330895873|gb|EGH28159.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 255

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 11/243 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------AT 188
           +   +  +  P +P F SLN++ AV ++ +E     + ++E+   E + P        AT
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQQ-GEASKPASAHNAELAT 184

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++   K
Sbjct: 185 MDEMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQK 243

Query: 249 FSR 251
            +R
Sbjct: 244 AAR 246


>gi|66044482|ref|YP_234323.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255189|gb|AAY36285.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330969083|gb|EGH69149.1| RNA methyltransferase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 254

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 12/243 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------AT 188
           +   +  +  P +P F SLN++ AV ++ +E     + ++E+   E + P        AT
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQG--EASRPASAHNAELAT 183

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++   K
Sbjct: 184 MDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQK 242

Query: 249 FSR 251
            +R
Sbjct: 243 AAR 245


>gi|269467901|gb|EEZ79640.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 245

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 6/237 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++V+     NIG  ARAM N NL++L LVNP+ G+PS  A + ++ AD ++ +  V   
Sbjct: 13  VVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPK-GYPSAVATARASGADDLLANAVVCET 71

Query: 77  LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+EA+   H +   +AR RN  +K +      + +       GQ V ++FG E++GLTNE
Sbjct: 72  LEEALQGSHLVIGASARQRNIKWKQMDVVGACSEIQQATTTEGQEVSVVFGTEKYGLTNE 131

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELLS 194
           E+ L   +++ P NP + SLN++ A+ +  ++  + N+    EK+    N  A+  EL  
Sbjct: 132 ELDLCQILMTIPGNPNYFSLNVASAIQVFAYQNYISNTTTEFEKS---SNELASFDELEG 188

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           F  +L   LE   YF     K+ ++  L   F R E  +EEV + RGI+  +  F +
Sbjct: 189 FYTHLTQVLEHIEYFEDKRPKELLMRRLRRFFGRSEPEKEEVAIFRGILRNIRPFKK 245


>gi|34499100|ref|NP_903315.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34104951|gb|AAQ61307.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 244

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 132/232 (56%), Gaps = 3/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P    NIG  ARAM    L++L LV P+  +PSE+A + ++ A  ++++  V  +
Sbjct: 6   VVLARPNHPGNIGSAARAMKTMGLSRLYLVEPKV-FPSEEANALASGAVDLLENATVVGS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA++D+    A T+R R     +  P++    L  R   G+ V ++FG E +GL+ EE
Sbjct: 65  LREALSDVTVACALTSRRRELTTPLSTPRQTTPELIARARDGEQVALVFGNETFGLSIEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   N +++ P NP + SLN++ AV +M +E   ++ V  E  ++ +   AT+ E+    
Sbjct: 125 VEQCNRLVTIPGNPDYFSLNLAMAVQVMTYELFSHTGVDVEY-LRAEGEAATQSEVDGMC 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +++E GYF+     ++++  + ++F R  ++REE+ +LRG    + +
Sbjct: 184 GHLEQAMDEIGYFQR-RNSERLMRRMRTMFHRAGMLREEIDILRGFYKQVQR 234


>gi|330965901|gb|EGH66161.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 257

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 133/245 (54%), Gaps = 13/245 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L +L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVCTTHPGNIGGAARAMKNMGLARLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           +   +  +  P +P F SLN++ AV ++ +E +  + +++     +  TP          
Sbjct: 126 LQRCHFHVHIPSDPTFSSLNLAAAVQVLSYE-VRMAWLAASVQAGQGETPKAASAHSAEL 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+  F  +LE +L + G+  P EK + ++  L  +F R E+ R E+ +LRG+++  
Sbjct: 185 ATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTET 243

Query: 247 DKFSR 251
            K +R
Sbjct: 244 QKAAR 248


>gi|213971532|ref|ZP_03399643.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato T1]
 gi|301386137|ref|ZP_07234555.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
 gi|302060163|ref|ZP_07251704.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
 gi|302135106|ref|ZP_07261096.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923724|gb|EEB57308.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato T1]
          Length = 257

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 133/245 (54%), Gaps = 13/245 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  LT+L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+      V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGERAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           +   +  +  P +P F SLN++ AV ++ +E +  + +++     E  TP          
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYE-VRMAWLAASVQADEGETPKVASAHNAEL 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+  F  +LE +L + G+  P EK + ++  L  +F R E+ R E+ +LRG+++  
Sbjct: 185 ATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTET 243

Query: 247 DKFSR 251
            K +R
Sbjct: 244 QKAAR 248


>gi|89094499|ref|ZP_01167438.1| putative tRNA/rRNA methyltransferase (trmH family protein)
           [Oceanospirillum sp. MED92]
 gi|89081235|gb|EAR60468.1| putative tRNA/rRNA methyltransferase (trmH family protein)
           [Oceanospirillum sp. MED92]
          Length = 241

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 134/234 (57%), Gaps = 8/234 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L++     NIG  ARAM N  L++L LV P + +PSE+A S +A A  ++DS  V S 
Sbjct: 7   VVLINTFHPGNIGAAARAMKNMGLSKLYLVEPEE-FPSEEADSRAAGAKDLLDSAIVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+EAI+D   +  T+AR +  F   L  A K A  V+ E   SG+ V ++FGRE  GL N
Sbjct: 66  LEEAISDCQLVIGTSARTKRTFDLPLLNARKGAERVVAE-AQSGE-VALVFGRETMGLHN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            E+   N  +  P NP +P LN+SQA+ L+ +E   ++   +   V+E+  P  K E+  
Sbjct: 124 HELQQCNFHVYIPANPEYPVLNVSQAIQLLCYEIFMSAENKTYSEVEEE-YPRHK-EMAL 181

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F +++E  L    +  P + + K+L+ L+  F R    R E+ +LRGI++++++
Sbjct: 182 FYEHMEKVLRLTNFIIP-QHEGKVLEKLHRFFNRSRPERTELNMLRGILTSVEE 234


>gi|289626167|ref|ZP_06459121.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649074|ref|ZP_06480417.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330869591|gb|EGH04300.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 257

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 136/245 (55%), Gaps = 13/245 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++S +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILESAKVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           +   +  +  P +P F SLN++ AV ++ +E +  + +++  + ++  TP          
Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYE-VRMAWLAASAHSEQGETPKAVSAHNAEL 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++  
Sbjct: 185 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 243

Query: 247 DKFSR 251
            K +R
Sbjct: 244 QKAAR 248


>gi|190150169|ref|YP_001968694.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263508|ref|ZP_07545123.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915300|gb|ACE61552.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871151|gb|EFN02880.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 243

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 139/238 (58%), Gaps = 14/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+ + ++F +
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLANAQIFDS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++AIAD   +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER GLTNEE
Sbjct: 68  FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190
           +   +  ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+ 
Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 186 -LEHFFNHTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|302185759|ref|ZP_07262432.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
          Length = 254

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 8/241 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194
           +   +  +  P +P F SLN++ AV ++ +E     + ++E+    +   A   EL +  
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGDASRPASAHNAELATMD 185

Query: 195 ----FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
               F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++   K +
Sbjct: 186 EMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQKAA 244

Query: 251 R 251
           R
Sbjct: 245 R 245


>gi|330950802|gb|EGH51062.1| RNA methyltransferase [Pseudomonas syringae Cit 7]
          Length = 254

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 12/243 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGDGIEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------AT 188
           +   +  +  P +P F SLN++ AV ++ +E     + ++E+   E + P        AT
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQG--EASRPASAHSAELAT 183

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++   K
Sbjct: 184 MDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQK 242

Query: 249 FSR 251
            +R
Sbjct: 243 AAR 245


>gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133739252|emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 8/234 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+     NIG  ARA+ N   ++L LVNPR  D    E+A + ++ A  ++ S R+  
Sbjct: 10  VLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDILASARIVG 69

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +++EA+AD ++  A TAR R     V+ P+E A  L +   +G    +IFG ER+GL NE
Sbjct: 70  SIEEALADCNYAAAVTARLREFSPPVITPRELATRLADE--AGLQAAVIFGNERFGLPNE 127

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKGEL 192
            +   N +I+ P NP + SLN++QAV ++ +E    +IV   S+  N+  Q   A   ++
Sbjct: 128 IVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMAAIVDAPSAVSNIGFQGEAAGMAQI 187

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
                +LE +L    +    +  KK++  L  +F R +L  EEV +LRGI   +
Sbjct: 188 EGMYAHLEQALVAIDFLD-ADNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQI 240


>gi|92114963|ref|YP_574891.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91798053|gb|ABE60192.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 274

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 136/253 (53%), Gaps = 16/253 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L+      NIG  ARAM N  L  L LV PR      ++ + ++ AD ++ + RV + 
Sbjct: 22  IVLIGTSHPGNIGGTARAMHNMGLADLALVAPRCEVYGSESHARASGADALVSNARVHAT 81

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI---FSGQN--VGIIFGRERWG 131
           L+EA++D  F+   +AR R+    +L P+     L ER+    + +N    ++FGRE  G
Sbjct: 82  LEEAVSDCTFVVGASARVRHLPWPMLTPR----ALGERLPRECAPENARAALVFGREDSG 137

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNT 185
           +TN E+   +A +  P NP F SLN++ AV ++ +EC    + S  ++      V+  N 
Sbjct: 138 MTNGELQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLAFLGSDAEDTETPFGVEWDNP 197

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  +L  F ++LE +L +  +  P +  ++++  L  +F+R  +   E+ +LRGI+  
Sbjct: 198 PATHDDLERFFEHLERTLIDIDFHDP-DNPRQLMARLRRLFLRTHIDSMEMNILRGILGA 256

Query: 246 LDKFSRQSSRRNN 258
           ++K SR  + R +
Sbjct: 257 VNKQSRALAARKD 269


>gi|254373233|ref|ZP_04988722.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570960|gb|EDN36614.1| rRNA methyltransferase [Francisella novicida GA99-3549]
          Length = 247

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 134/240 (55%), Gaps = 15/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V+++  + +N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDDE-ALALSCHATEVVNNATIVAN 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+  + ++  T+AR R     V  P E     A  +L++   S + + I+FGRER G
Sbjct: 69  LEEALEGVDYVVGTSARVR----RVSLPIEPISKIATNILSKIQKSDEKIAILFGRERTG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQN---TPA 187
           L N E+ +SN     P N  + SLN++QAV L+ +E  + ++ +S+ K V E N     A
Sbjct: 125 LLNGELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNHLHKKA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG +++L+
Sbjct: 185 SVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGFLTSLE 243


>gi|219870434|ref|YP_002474809.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|219690638|gb|ACL31861.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 242

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 132/235 (56%), Gaps = 7/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL++     NIG  ARAM    L++LRLV P+     E+A + +A A  V+D+V+++++
Sbjct: 8   IILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQAI-DEQAIALAAGAKDVLDNVQIYAD 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +  AIAD   +  T+AR R    S++ P++   +  +R   G+ V I+FGRER GLTNEE
Sbjct: 67  IDSAIADCQLVIGTSARLRYLQNSLVEPRQCGKLAIQRAEQGK-VAIVFGRERVGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGELLSF 195
           +   +  ++FP NP + SLN++ AV L  +E     +   EK +++      T   L  F
Sbjct: 126 LLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSEALEHF 185

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
             + E   +E G+ R     + ++  L  ++ R EL   E+ LLRG+++ ++K+S
Sbjct: 186 FAHTERLYKELGFIR----NEAVMLKLRRLYQRAELETNELNLLRGMLTAVEKYS 236


>gi|226328027|ref|ZP_03803545.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
 gi|225203731|gb|EEG86085.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
          Length = 252

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 133/244 (54%), Gaps = 16/244 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    LT L  VNP++  P   + + SA A  VI +  + ++
Sbjct: 17  IILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNAHIVNS 75

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           + EAI     +  T+AR+R     +LAP+E      ER       + V IIFGRER GLT
Sbjct: 76  IDEAIEGCGLVIGTSARSRTLSWPMLAPRECG----ERCVMEAKHKPVAIIFGRERTGLT 131

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT----- 188
           NEE+   +  +  P NP + SLN++ AV L+ +E    ++   EK  +E+N+P+      
Sbjct: 132 NEELQKCDFHLYVPTNPEYGSLNLAMAVQLVSYEIRMAALAQEEK--QEENSPSEIDYPP 189

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++  F  +LE  L E G+ RP +   +++  L  +F R     +E+ +LRGI+++++K
Sbjct: 190 ADDIERFYVHLEQVLNESGFIRP-KHPGQVMSRLRRLFTRARPETQELHILRGILTSVEK 248

Query: 249 FSRQ 252
           ++++
Sbjct: 249 WAKK 252


>gi|153869173|ref|ZP_01998846.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
 gi|152074284|gb|EDN71155.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
          Length = 241

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV      NIG  ARAM    L+ LRLV P+  +PS +A + ++ AD ++ +  +F N
Sbjct: 7   IILVGITHPGNIGAAARAMKTMGLSHLRLVQPKH-FPSAEATARASGADDLLSNALLFDN 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++++ D H ++ T+ R R     VL P   A    + +   + V ++FGRE+ GLTN+E
Sbjct: 66  FEDSLKDCHLVFGTSTRQRMIAWPVLTPIACA---EKALECPKPVALVFGREQSGLTNKE 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQN--TPATKGE 191
           + L N ++  P N  F SLN++ AV ++ +E  + +   I+ ++ N  + +   PA+   
Sbjct: 123 LDLCNYLVQIPTNSEFNSLNVAAAVQILSYELRKTNEAFIIKNDTNALKNSLPAPASLQA 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +  F  +LE +L +  +  P +K K ++  L+ +F R +L+  EV +LRG+++   K
Sbjct: 183 MAQFYQHLEQTLIDIEFLDP-QKPKLLMRHLHRLFNRVQLLDSEVQILRGLLTAAQK 238


>gi|71738099|ref|YP_273564.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558652|gb|AAZ37863.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320322935|gb|EFW79025.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329942|gb|EFW85930.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 257

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++S +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILESAKVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSE-----KNVKEQNTP-A 187
           +   +  +  P +P F SLN++ AV ++ +E       ++  SE     K V   N   A
Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAALAHSEQGETPKAVSAHNAELA 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++   
Sbjct: 186 TMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTETQ 244

Query: 248 KFSR 251
           K +R
Sbjct: 245 KAAR 248


>gi|16331860|ref|NP_442588.1| hypothetical protein slr0120 [Synechocystis sp. PCC 6803]
 gi|1208490|dbj|BAA10658.1| slr0120 [Synechocystis sp. PCC 6803]
          Length = 240

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 12/241 (4%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           ++PQ   N+G +ARAM N  L +L LVNPR  + S +A++ + +A  V+   +V  +L  
Sbjct: 1   MEPQGERNVGAIARAMKNMGLEELILVNPRCDYRSVEAQTMAVHAKDVLAQAKVVDDLAT 60

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A+ D   I AT+AR R     +  P++A   L   +       ++FGRE  GLTNEE+  
Sbjct: 61  ALGDRQRIIATSARERILQSPMETPRQALPWL---LAPNLKSALVFGREDSGLTNEELNQ 117

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTP--ATKGE 191
           ++  +  PV+P +PSLN+SQAV++  +E  + S+     N      +++ +T   AT  +
Sbjct: 118 AHRFVRIPVHPQYPSLNLSQAVMVCTYELYQASLAMETNNQVPGDRLEDGSTMPLATNAQ 177

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L S+  +LE +L       P   + KM      I+ R  L  EEV LLRGI+  +D  ++
Sbjct: 178 LDSYCQHLEKTLLNIEVLYPHTARSKMA-KFRRIYQRAALNSEEVALLRGILGQIDWLAQ 236

Query: 252 Q 252
           Q
Sbjct: 237 Q 237


>gi|331009172|gb|EGH89228.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 257

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 13/245 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           +   +  +  P +P F SLN++ AV ++ +E +  + +++  + ++  TP          
Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYE-VRMAWLAASAHSEQGGTPKAVSAHNAEL 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++  
Sbjct: 185 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 243

Query: 247 DKFSR 251
            K +R
Sbjct: 244 QKAAR 248


>gi|15839065|ref|NP_299753.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|9107672|gb|AAF85273.1|AE004055_11 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 281

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P +    E A   SA A+ V+++  V + L
Sbjct: 39  VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 97

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNEE+
Sbjct: 98  ADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNEEL 157

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193
            L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +L 
Sbjct: 158 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 217

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                 + +L+E  + +    +  M   L  +F + EL ++E+ LLRG++S + +
Sbjct: 218 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 271


>gi|307824418|ref|ZP_07654643.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
           tundripaludum SV96]
 gi|307734402|gb|EFO05254.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
           tundripaludum SV96]
          Length = 246

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 15/249 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  +  L LV P+  +PS  A S ++ AD V+    V + 
Sbjct: 7   IVLVETTHPGNIGAVARAMKNMKMHNLWLVAPKI-FPSADATSRASGADDVLAGATVCAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134
           L+EAIAD   +   +AR R      + P+E A  +++NE    G  V I+FGRE  GL N
Sbjct: 66  LQEAIADCQVVIGASARGRTISWPEMTPRECAEKVLINE---PGNKVAIVFGRENSGLKN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPATKG 190
            E+ L + ++  P N  + SLNI+ A  ++ +E    S ++ ++ +    K ++  AT  
Sbjct: 123 HELDLCHFLLRIPCNSEYSSLNIAAAAQVVCYELFVASGLAEQEQIVVGDKGEDPLATAT 182

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++ SF  +L  +L + G+  P  K K ++  L  I+ R ++  +E+ +LRGI+    + S
Sbjct: 183 QMESFYTHLAEALTDIGFMHPA-KSKSIMRRLRRIYNRVQMDTKELDILRGIL----RMS 237

Query: 251 RQSSRRNNV 259
           +   R N+V
Sbjct: 238 QGHKRNNDV 246


>gi|71898718|ref|ZP_00680887.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|71731483|gb|EAO33545.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
          Length = 263

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P +    E A   SA A+ V+++  V + L
Sbjct: 21  VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 79

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNEE+
Sbjct: 80  ADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNEEL 139

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193
            L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +L 
Sbjct: 140 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 199

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                 + +L+E  + +    +  M   L  +F + EL ++E+ LLRG++S + +
Sbjct: 200 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 253


>gi|182682100|ref|YP_001830260.1| RNA methyltransferase [Xylella fastidiosa M23]
 gi|182632210|gb|ACB92986.1| RNA methyltransferase, TrmH family, group 1 [Xylella fastidiosa
           M23]
 gi|307578367|gb|ADN62336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 263

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P +    E A   SA A+ V+++  V + L
Sbjct: 21  VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 79

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNEE+
Sbjct: 80  ADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNEEL 139

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193
            L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +L 
Sbjct: 140 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 199

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                 + +L+E  + +    +  M   L  +F + EL ++E+ LLRG++S + +
Sbjct: 200 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 253


>gi|28199373|ref|NP_779687.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|28057479|gb|AAO29336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
          Length = 252

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P +    E A   SA A+ V+++  V + L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNEE+
Sbjct: 69  ADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNEEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193
            L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +L 
Sbjct: 129 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 188

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                 + +L+E  + +    +  M   L  +F + EL ++E+ LLRG++S + +
Sbjct: 189 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 242


>gi|254480252|ref|ZP_05093500.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2148]
 gi|214039814|gb|EEB80473.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2148]
          Length = 250

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 12/246 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  L++L LV PR  +P E+A   +A+A  V+D+  V  +
Sbjct: 8   IVLVNTSHPGNIGGVARAMKNMGLSRLYLVEPRQ-FPDEQADWRAASAADVLDTAVVTES 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+EAIAD  F+  T+AR R     +L P++ A    ER+    N   V ++FGRE  GLT
Sbjct: 67  LEEAIADCQFVVGTSARGRRIPWPLLDPRQCA----ERMALASNDEQVAVLFGREDRGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGE 191
           N+E+ L N  ++ P +  + SLN++ AV ++ +E   + NS +  +   +E +TP T GE
Sbjct: 123 NDELKLCNLHLNIPTSEDYSSLNLAMAVQVVCYELRMLLNSPLLPKTEDEEWDTPFTTGE 182

Query: 192 -LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +  F  +LE +L +  +  P   ++ M+  L  ++ R  L   E+ +LRGI++   K+ 
Sbjct: 183 NMERFYSHLEETLTDIEFLDPAAPRQLMV-RLRRLYSRVRLDEMELNILRGILTETQKWV 241

Query: 251 RQSSRR 256
            +S  +
Sbjct: 242 SKSKNK 247


>gi|330504693|ref|YP_004381562.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328918979|gb|AEB59810.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 262

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 127/251 (50%), Gaps = 11/251 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV P D +PS  A + ++ A  V+D+ +V   
Sbjct: 10  VVLVGTSHPGNIGGAARAMKNMGLSRLVLVAPED-FPSGDAVARASGATDVLDAAQVVGT 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R     +L P+E  +   E+  +G  V ++FGRE  GLTNEE
Sbjct: 69  LEEALVGCTLVIGTSARDRRIPWPLLDPRECGVTSCEQAAAGGEVALVFGREYAGLTNEE 128

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---------EKNVKEQNTPA 187
           +      +  P NP F SLN++ AV ++ +E     + +S         E      +  A
Sbjct: 129 LQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLETTAMLSSQAA 188

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL SF  +L   L   G+  P +K + ++  L  ++ R  + + E+ +LRGI++  +
Sbjct: 189 TADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNILRGILTETE 247

Query: 248 KFSRQSSRRNN 258
           K  R    +  
Sbjct: 248 KAVRGEPHKQG 258


>gi|254361622|ref|ZP_04977760.1| rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|153093140|gb|EDN74156.1| rRNA methyltransferase [Mannheimia haemolytica PHL213]
          Length = 238

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 10/235 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    LT LRLV P+     E+A + +A A  V+D+ + ++ 
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL-DEQAEALAAGAKDVLDNAQCYAT 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             EAIAD   +  T+AR R+   +++ P++   ++  R   G+ V I+FGRER GLTNEE
Sbjct: 68  FDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRTNLGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKN--VKEQNTPATKGELL 193
           +      ++FP NP + SLN++ AV L  +E  M     S EK     +++ P  +  L 
Sbjct: 127 LLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTAQA-LE 185

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  + E    E G+ R       ++  L  ++ R EL   E+ LLRG+++ ++K
Sbjct: 186 HFFAHTERLYTELGFIR----NDSVMLKLRRLYQRAELETNELNLLRGMLTAVEK 236


>gi|257487213|ref|ZP_05641254.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330985000|gb|EGH83103.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 257

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 135/245 (55%), Gaps = 13/245 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           +   +  +  P +P F SLN++ AV ++ +E +  + +++  + ++  TP          
Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYE-VRMAWLAASAHSEQGETPKAVSAHNAEL 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++  
Sbjct: 185 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 243

Query: 247 DKFSR 251
            K +R
Sbjct: 244 QKAAR 248


>gi|261493539|ref|ZP_05990059.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495378|ref|ZP_05991826.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261308883|gb|EEY10138.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310721|gb|EEY11904.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 238

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 10/235 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    LT LRLV P+     E+A + +A A  V+D+ + ++ 
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL-DEQAEALAAGAKDVLDNAQCYAT 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             EAIAD   +  T+AR R+   +++ P++   ++  R   G+ V I+FGRER GLTNEE
Sbjct: 68  FDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRANLGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKN--VKEQNTPATKGELL 193
           +      ++FP NP + SLN++ AV L  +E  M     S EK     +++ P  +  L 
Sbjct: 127 LLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTAQA-LE 185

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  + E    E G+ R       ++  L  ++ R EL   E+ LLRG+++ ++K
Sbjct: 186 HFFAHTERLYTELGFIR----NDSVMLKLRRLYQRAELETNELNLLRGMLTAVEK 236


>gi|71276243|ref|ZP_00652522.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
 gi|71900996|ref|ZP_00683108.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|170730741|ref|YP_001776174.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
 gi|71163004|gb|EAO12727.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
 gi|71729247|gb|EAO31366.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|167965534|gb|ACA12544.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
          Length = 263

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P +    E A   SA A+ V+++  V + L
Sbjct: 21  VLVGTQHPGNIGAAARAMKTMGISRLVLVAP-ECQLDEHAYRRSAGAEDVLEAASVHTVL 79

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNEE+
Sbjct: 80  ADAVADCTFVLGCTARARRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNEEL 139

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGELL 193
            L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +L 
Sbjct: 140 QLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQLE 199

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                 + +L+E  + +    +  M   L  +F + EL ++E+ LLRG++S + +
Sbjct: 200 GLFGQFKQTLDEIDFHKGRAPESAM-RKLRRLFAKAELTQQEIRLLRGVLSDVQR 253


>gi|307261328|ref|ZP_07543003.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869059|gb|EFN00861.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 243

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 135/231 (58%), Gaps = 14/231 (6%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D+ ++F + ++AIAD
Sbjct: 16  LPANIGSAARAMKTMRLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDSFEQAIAD 74

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              +  T+AR R+   S++ P+E   +  ER   G+ V I+FGRER GLTNEE+   +  
Sbjct: 75  CQLVIGTSARLRHLQNSLIEPRECGKLAVERAEQGK-VAIVFGRERVGLTNEELLKCHYH 133

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKGELLSFLD 197
           ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+  L  F +
Sbjct: 134 LNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA-LEHFFN 191

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 192 HTERLYKQLGFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|56461142|ref|YP_156423.1| rRNA methyltransferase [Idiomarina loihiensis L2TR]
 gi|56180152|gb|AAV82874.1| rRNA methyltransferase, TrmH family [Idiomarina loihiensis L2TR]
          Length = 240

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 126/233 (54%), Gaps = 5/233 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM    L++L LV+P    P   A + +A A  ++ S  +   
Sbjct: 7   IVLVNTSHTGNIGSVARAMKTMGLSKLTLVDPVQ-EPDSHASALAAGATDILASATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+EAIAD   + AT+ARNR     +L P+E AA VL E   S   V ++FGRE  GLTNE
Sbjct: 66  LQEAIADCGLVIATSARNRTLDWPLLGPRECAAKVLEET--SQHQVALVFGRENSGLTNE 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  S   +  P NP + SLN++ AV  + +E     + S ++  +         +L  F
Sbjct: 124 ELQQSQFHLHIPTNPDYSSLNLAMAVQTVSYELRMQWLESKQRAPENLPEYPRAEDLERF 183

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            ++LE +L + G+  P +   +++  L  +F R      E+ +LRGI++++DK
Sbjct: 184 YEHLEKTLGQTGFIVP-QHPGQVMTKLRRLFNRARPEENEINILRGILASVDK 235


>gi|33152694|ref|NP_874047.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33148918|gb|AAP96436.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 242

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 14/239 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    L+ LRLV P++    E+A + +A A  ++D+ ++F+ 
Sbjct: 9   IILVETSLSANIGSAARAMKTMGLSNLRLVRPKNPL-DEQATALAAGAKNILDNAQIFNT 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135
              AIAD   I  T+AR R+   +++ P+E   +++N    +   + +IFGRER GLTNE
Sbjct: 68  FDAAIADCQLIIGTSARLRHLQSTLVEPRECGKLIINNT--NQHKIALIFGRERIGLTNE 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-----KEQNTPATKG 190
           E+   +  ++ P NP + SLN++ AV L  +E     +   +K +     +E+N P T  
Sbjct: 126 ELLKCHYHLNVPTNPEYESLNLAMAVQLACYEIRMAWLELQKKPIIQPLTEEKNYP-TAA 184

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +  F D+ E   +E G+ R       ++  L  ++ R +L   E+ LLRG+++ ++K 
Sbjct: 185 AMAHFFDHTERLYKELGFIR----NDAVMLKLRRLYQRAKLEENELNLLRGMLTAVEKH 239


>gi|197285717|ref|YP_002151589.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
 gi|194683204|emb|CAR43857.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
          Length = 242

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 20/246 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    LT L  VNP++  P   + + SA A  VI +  +   
Sbjct: 7   IILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNAHIVET 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           + +AI     +  T+ARNR     +LAP+E      ER     + + V +IFGRER GLT
Sbjct: 66  IDDAIEGCGLVIGTSARNRTLSWPMLAPRECG----ERCVKEAANKPVAVIFGRERTGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------P 186
           NEE+   +  +  P NP + SLN++ AV L+ +E    ++   EK  +E+N        P
Sbjct: 122 NEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEK--QEENASSEIDYPP 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A   ++  F  +LE  L E G+ RP +   +++  L  +F R     +E+ +LRGI++++
Sbjct: 180 AE--DIERFYVHLEQVLNESGFIRP-KHPGQVMSRLRRLFTRARPETQELHILRGILTSV 236

Query: 247 DKFSRQ 252
           +K++++
Sbjct: 237 EKWAKK 242


>gi|227356228|ref|ZP_03840617.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227163692|gb|EEI48608.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 242

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 20/246 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    LT L  VNP++  P   + + SA A  VI +  +   
Sbjct: 7   IILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           + +AI     +  T+ARNR     +LAP+E      ER     + + V +IFGRER GLT
Sbjct: 66  IDDAIEGCGLVIGTSARNRTLSWPMLAPRECG----ERCVKEAANKPVAVIFGRERTGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------P 186
           NEE+   +  +  P NP + SLN++ AV L+ +E    ++   EK  +E+N        P
Sbjct: 122 NEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEK--QEENASSEIDYPP 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A   ++  F  +LE  L E G+ RP +   +++  L  +F R     +E+ +LRGI++++
Sbjct: 180 AE--DIERFYVHLEQVLNESGFIRP-KHPGQVMSRLRRLFTRARPETQELHILRGILTSV 236

Query: 247 DKFSRQ 252
           +K++++
Sbjct: 237 EKWAKK 242


>gi|330894480|gb|EGH27141.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 257

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 134/245 (54%), Gaps = 13/245 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LENALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           +   +  +  P +P F SLN++ AV ++ +E +  + +++  + ++  TP          
Sbjct: 126 LQRCHFHVHIPSDPGFSSLNLAAAVQVLSYE-VRMAWLAASAHSEQGETPKAVSAHNAEL 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++  
Sbjct: 185 ATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTET 243

Query: 247 DKFSR 251
            K +R
Sbjct: 244 QKAAR 248


>gi|307256894|ref|ZP_07538672.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864628|gb|EFM96533.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 242

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 138/238 (57%), Gaps = 14/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+ + ++F +
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLANAQIFDS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++AIAD   +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER GLTNEE
Sbjct: 68  FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190
           +   +  ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+ 
Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  F ++ E   ++  + R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 186 -LEHFFNHTERLYKQLSFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|307245706|ref|ZP_07527792.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306853408|gb|EFM85627.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 243

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 138/238 (57%), Gaps = 14/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+ + ++F +
Sbjct: 9   IILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLANAQIFDS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++AIAD   +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER GLTNEE
Sbjct: 68  FEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKG 190
           +   +  ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+ 
Sbjct: 127 LLKCHYHLNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  F ++ E   ++  + R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 186 -LEHFFNHTERLYKQLSFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|253690031|ref|YP_003019221.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756609|gb|ACT14685.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 228

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 103/184 (55%), Gaps = 6/184 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V     +    AR  +  +  ++D+V+VFS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGST-VYQEPAARWVAHGSGDILDNVQVFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  ++    P E   VL E++    +  ++FGRE  GLTNEE
Sbjct: 64  LADALADVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++  E   V SE        PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMDVKSEA-----VQPAVAGQLSALH 178

Query: 197 DYLE 200
           D L+
Sbjct: 179 DRLD 182


>gi|37521709|ref|NP_925086.1| methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35212707|dbj|BAC90081.1| glr2140 [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 126/249 (50%), Gaps = 8/249 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV  Q   N+G +AR + NF+L++L LV P      E+AR  + +A  V+D  R+ ++
Sbjct: 5   IVLVATQGARNLGAIARVIKNFDLSELWLVAPECSPKDEEARHMAVHAADVLDQARIVAS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD   +  TTAR R      L P E A  L  R   G     +FG E  GL+NEE
Sbjct: 65  LSQALADCTRVAGTTARTRTVSDPPLLPAEGARWL--RADKG-TAAYVFGPEDRGLSNEE 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL-SF 195
           +A     +  P    +PSLN++QAV +  +    +S   S      QN P  + E+L  F
Sbjct: 122 LAHCQRTVQIPTGAAYPSLNLAQAVGICAYALFTDSKPPSPVF---QNEPMPEAEVLEGF 178

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
             +LE +L   GY +    ++K L+    +F R  L  +EV LLRG++  +D  S Q+  
Sbjct: 179 YGHLERTLLAIGYLQEHTAERK-LEKFRRLFNRAGLTAQEVALLRGVLRQIDWASTQNPA 237

Query: 256 RNNVLLQKT 264
           R   L   T
Sbjct: 238 RQLPLTPDT 246


>gi|146308529|ref|YP_001188994.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145576730|gb|ABP86262.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas mendocina
           ymp]
          Length = 262

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 126/251 (50%), Gaps = 11/251 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV P D +PS  A + ++ A  V+D+ +V   
Sbjct: 10  VVLVGTSHPGNIGGAARAMKNMGLSRLVLVAPED-FPSGDAVARASGATDVLDAAQVVDT 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R     +L P+E  +   E+   G  V ++FGRE  GLTNEE
Sbjct: 69  LEEALVGCTLVVGTSARDRRIPWPLLDPRECGVTSCEQAAVGGEVALVFGREYAGLTNEE 128

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---------EKNVKEQNTPA 187
           +      +  P NP F SLN++ AV ++ +E     + +S         E      +  A
Sbjct: 129 LQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLETTAMLNSQAA 188

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL SF  +L   L   G+  P +K + ++  L  ++ R  + + E+ +LRGI++  +
Sbjct: 189 TADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNILRGILTETE 247

Query: 248 KFSRQSSRRNN 258
           K  R    +  
Sbjct: 248 KAVRGEPHKQG 258


>gi|53803244|ref|YP_115015.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757005|gb|AAU91296.1| RNA methyltransferase, TrmH family, group 1 [Methylococcus
           capsulatus str. Bath]
          Length = 247

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  L+ L LV+P+  +PSE+A + ++ AD ++ + R+F +
Sbjct: 7   IVLVETTHPGNIGGVARAMKNMGLSDLALVSPKI-FPSEQATARASGADDLLAAARLFGS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LK+AIAD   +   +AR R      L P+ AA  +   +  G    I+FGRE  GLTN E
Sbjct: 66  LKDAIADCQLVIGASARLRTIAWPELDPRTAAAEIAG-LPEGTRSAIVFGREHSGLTNGE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-LLSF 195
           +   + ++    NP F SLN++ AV ++ +E     + + +     ++ P   GE + SF
Sbjct: 125 LEQCHFLLHIASNPEFSSLNLACAVQVVAYELY---LAAGQGGSGRRSPPLADGEQMASF 181

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            D+LE +L +  +         ++  L  IF    +  +E+ LLRGI++ 
Sbjct: 182 FDHLERTLYDIRFLHARRSSPSIMRRLRRIFNSARIEAQEIHLLRGILTA 231


>gi|224824740|ref|ZP_03697847.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
           2002]
 gi|224603233|gb|EEG09409.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
           2002]
          Length = 254

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 140/256 (54%), Gaps = 8/256 (3%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P++ +  K   ++L  P    NIG  ARAM    L++L LV P+  +PS +A + ++ A 
Sbjct: 4   PEVPDFLKNIRVVLARPSHPGNIGSAARAMKTMGLSRLYLVEPKT-FPSPEADTLASGAV 62

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++    V + L EA++D+    A T+R R     +  P++    L  R   G+ V ++F
Sbjct: 63  DLLQHAVVVNTLAEALSDVTVACALTSRRRELTTPLSTPRQTTPELVARARDGEQVALVF 122

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           G E +GL+ +E+   N +++ P NP + SLN++ AV +M +E   ++ V  +  ++ +  
Sbjct: 123 GNETFGLSIDEVEQCNRLVTIPGNPEYFSLNLAMAVQVMTYELFSHTGVDVDY-LRAEAE 181

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKK--KKMLDDLYSIFIRPELMREEVFLLRGIV 243
            AT+ E+  F  +L+ +L + GY+   E++  ++++  L ++F R  L+REE+ +LRG +
Sbjct: 182 SATRDEVEGFCGHLDQTLADIGYY---ERRNGERLMRRLRTLFNRAHLLREEIDILRGFL 238

Query: 244 STLDKFS-RQSSRRNN 258
             + + + R   RR  
Sbjct: 239 KQVQRVAHRDDGRRQQ 254


>gi|70732292|ref|YP_262048.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68346591|gb|AAY94197.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas
           fluorescens Pf-5]
          Length = 257

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 136/244 (55%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV PR  +PS +A + ++ A  ++++ +V + 
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPR-VFPSHEADARASGATDILENAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+A    ++ T+AR+R     +L P+E+ + + E    G  V ++FGRE  GLTN+E
Sbjct: 66  LEDALAGCTLVFGTSARDRRIPWPLLDPRESGLKVVEEAGQGAQVALVFGREDSGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTP-----A 187
           +   +  +  P +P F SLN++ AV ++ +E   + + +  +  K    E  +P     A
Sbjct: 126 LQRCHFHVHIPSDPEFSSLNLATAVQVLAYEVRMSWLAAQGQPSKVEKDEVASPRSDELA 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  F ++L+ +L    +  P EK + ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 186 TMDELERFYEHLQQTLVAIDFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGILTETQ 244

Query: 248 KFSR 251
           K +R
Sbjct: 245 KAAR 248


>gi|325272151|ref|ZP_08138582.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324102714|gb|EGC00130.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 251

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 129/239 (53%), Gaps = 6/239 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+ + +V  +
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLGNAQVVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+   + +  T+AR R+    ++ P+E           G+ + ++FGRE  GLTNEE
Sbjct: 66  LEQALVGCNLVMGTSARERSIPWPLIGPRECGEKAVVHASGGEEIALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGEL 192
           +   +  +  P NP F SLN++ AV ++ +E     +   +  ++    + +  AT  E+
Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAGVAPAQVEKVDASELATMDEM 185

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             F D+LE +L   G+  P  K K ++  L  ++ R  + R E+ +LRGI++   K  R
Sbjct: 186 ELFYDHLEKTLVGIGFLDPA-KPKHLMPRLRRLYGRVAVERSEMSILRGILTETQKVVR 243


>gi|148244602|ref|YP_001219296.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326429|dbj|BAF61572.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 247

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++V+     NIG  ARAM N NL++L LVNP+ G+PS  A + ++ AD V+    V  +
Sbjct: 14  VVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPK-GYPSATATARASGADDVLSDAIVCES 72

Query: 77  LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+EA+   H +   +AR RN  ++ +        +        Q V +IFG E+ GLTN+
Sbjct: 73  LEEALKGTHLVIGASARQRNIKWRQMDVVGTCNKIQKTITIDSQEVAVIFGTEKSGLTNK 132

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLS 194
           E+ L   +++ P NP + SLN++ A+ +  +   +N I ++    KE  +  A+  EL S
Sbjct: 133 ELDLCQILMTIPGNPDYFSLNVASAIQVFAY---QNYIYNTPTEFKENVSKLASFDELES 189

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           F  +L   LE   YF+    +  ++  L   F + E   EEV + RGI+  +  F R
Sbjct: 190 FYTHLTQVLEHIEYFKDQHSQTLLMRRLRCFFTKVEPKIEEVSIFRGILKNIKPFKR 246


>gi|90417478|ref|ZP_01225401.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2207]
 gi|90330719|gb|EAS45998.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2207]
          Length = 248

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM N  L +L LV PR+ +P+ +A   +A A  V+    +  +
Sbjct: 12  IVLVNTTHPGNIGGAARAMKNMGLAELYLVQPRE-YPAPRAVWRAAGARDVLAGATIVES 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLT 133
           + EAIAD   +  T+AR R     +L P+E      E+I+S        ++FGRE  GLT
Sbjct: 71  VDEAIADCALVVGTSARERRIPWPLLNPRECG----EKIYSEAAEHKTALLFGREDRGLT 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189
           N+E+   +  +  P NP + SLN++ AV ++ +E    S+   + N+         P T 
Sbjct: 127 NDELQKCHYHVHIPSNPDYSSLNLATAVQVLAYEVRMASLADDQGNLPSLSEWDQPPVTA 186

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           G+L  F ++L  ++ E  ++ P E  K++L  +  +F R  + + EV +LRG++S + +
Sbjct: 187 GDLEFFHEHLATTMAELQFYDP-ENPKQLLTRMRRLFNRVRMDQMEVSILRGLLSAVQR 244


>gi|145636352|ref|ZP_01792021.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittHH]
 gi|145270517|gb|EDK10451.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittHH]
          Length = 241

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 134/238 (56%), Gaps = 18/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
             EA+ D   +  T+AR R+   +++ P+E A    E++  + G+ + I+FGRER GLTN
Sbjct: 65  FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T  
Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F DY E   +  G+ R     + ++  L  ++ R +L + E+ +L G++S ++K
Sbjct: 179 QLAYFFDYTERIYQSLGFIR----NQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232


>gi|257465416|ref|ZP_05629787.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
 gi|257451076|gb|EEV25119.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
          Length = 251

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 13/241 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E+A S +A A  V+D+ + F++
Sbjct: 16  IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKQPI-DEQAVSLAAGAKDVLDNAQTFAS 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +EAIAD H +  T+AR R+   +++ P++   +  +    G+ V ++FGRER GLTNEE
Sbjct: 75  FEEAIADCHIVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKGK-VALVFGRERIGLTNEE 133

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-------ATK 189
           +   +  ++ P NP + SLN++ AV L  +E     +   +     Q +P        + 
Sbjct: 134 LLKCHYHLNIPTNPEYGSLNLAMAVQLACYEVRMAWLAQQDLQKNSQISPLAERAAYPSN 193

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             L  F ++ E   +E G+ R       ++  L  ++ R  L   E+ LLRG+++ ++K+
Sbjct: 194 EALEYFFEHTERLYKELGFIR----NDAVMLKLRRLYQRARLETNELNLLRGMLTAVEKY 249

Query: 250 S 250
            
Sbjct: 250 H 250


>gi|148264087|ref|YP_001230793.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146397587|gb|ABQ26220.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
           uraniireducens Rf4]
          Length = 245

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 125/237 (52%), Gaps = 7/237 (2%)

Query: 12  AKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +KG + I+LV  Q   NIGMV RAM N  LT LRLVNP      E  + + +  D ++DS
Sbjct: 3   SKGTIAIVLVGTQSPGNIGMVCRAMKNMGLTDLRLVNPCQVDHPEALKFAVSARD-LLDS 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            R+FS+L+EA+ D     ATT R+    + +  P+E A  +N +      V ++FGRE  
Sbjct: 62  ARIFSSLEEALEDCEISVATTRRHGKYRQEISTPEEIAARVNAQA-GMHRVALVFGREDS 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLT +E+A+     + P    + SLN++QAVL+  +E  ++  VS      E    A   
Sbjct: 121 GLTTDEVAVCRWQSTIPTADDYGSLNLAQAVLIFCYELFKDKGVSP---ASEPRPLAGSA 177

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            + S    +E +L   G+  P +    ++  L  I+ R EL   EV +LRG++S +D
Sbjct: 178 AMESLYGQMERTLLRIGFLNP-QNPAHLMRTLRRIYSRAELDEREVAVLRGMMSQID 233


>gi|149375019|ref|ZP_01892792.1| rRNA methylase [Marinobacter algicola DG893]
 gi|149360908|gb|EDM49359.1| rRNA methylase [Marinobacter algicola DG893]
          Length = 284

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 17/257 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  L  L LVNP   +P E + + +A A  ++D   V S 
Sbjct: 20  IVLVETSHSGNIGAVARAMKNMGLGNLWLVNPVS-FPDEASYARAAGASDILDKATVVST 78

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD   +  T+AR R     V+AP  AA   +++  +GQ V ++FGRE  GL+NEE
Sbjct: 79  LDEAIADCVCVMGTSARGRKVPWPVIAPPGAAAKASQQSEAGQ-VALVFGRENHGLSNEE 137

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKEQNTPATKG- 190
           +   +  I  P NP + SLN++ AV +M +E   + +   E       +K    P  +G 
Sbjct: 138 LQRCHFHIHIPSNPDYSSLNLAMAVQVMCYELRMHYLKGLEGGDGSPYLKPMMAPGDEGW 197

Query: 191 --------ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
                   ++  F  +LE  L +  + R  +  ++++  L  +F R  L + E+ +LRGI
Sbjct: 198 DVPPAPVRDVEGFFSHLEQVLVDVDFHR-RDNPRQLMTRLRRLFQRAGLDQMEINILRGI 256

Query: 243 VSTLDKFSRQSSRRNNV 259
           ++ + K +  +    N 
Sbjct: 257 LTAVQKSAGAAETAKNT 273


>gi|256822726|ref|YP_003146689.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796265|gb|ACV26921.1| RNA methyltransferase, TrmH family, group 1 [Kangiella koreensis
           DSM 16069]
          Length = 277

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 139/267 (52%), Gaps = 27/267 (10%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           + PQL +S K   I+L       NIG  ARAM    L  L LV P+D +PSE+A   S+ 
Sbjct: 11  FDPQLLDSIK---IVLCQTSHPGNIGAAARAMKTMGLKHLVLVKPKD-YPSEEAMVRSSG 66

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  V+++ +V   ++EA+AD   I  T++RNR     ++ P+E   ++ E +   + V I
Sbjct: 67  ALDVLENAQVVDTVEEALADCRLIIGTSSRNRALPWPLIEPREMGELIKEHV-EARPVAI 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------ 177
           +FGRE  GL NEE+ L +  ++ P NP + SLN++ AV L+ +E    S + +E      
Sbjct: 126 MFGRESTGLLNEELQLCHYHVNIPANPEYMSLNLASAVQLIAYEIRLASKMIAEIVRKDS 185

Query: 178 ---------------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222
                          ++ KE    A+  E+    ++LE ++ +  ++ P E+ K +   +
Sbjct: 186 QPVDAELGYDAQAESEHDKESEQLASFEEVDGLYNHLESTMNKTEFYNP-EQPKLLPARI 244

Query: 223 YSIFIRPELMREEVFLLRGIVSTLDKF 249
             I  +  L + EV +LRG +S++DK+
Sbjct: 245 RRILAKARLNKGEVNILRGFLSSIDKY 271


>gi|118579084|ref|YP_900334.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118501794|gb|ABK98276.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter propionicus
           DSM 2379]
          Length = 251

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 5/231 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+PQ   NIGMV RAM N  L++LRLV   D +  E  + + +  D +++   ++ +
Sbjct: 14  IVMVEPQSPGNIGMVCRAMKNMGLSRLRLVKGCDRFHPESLKFAVSAKD-LLERAELYDD 72

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+AD      TT R+    + +L+P + A +L  R        ++FGRE  GLT +E
Sbjct: 73  LASALADCALTVGTTRRHGKYRQEILSPPQVATLLRTRAQGDCRGALVFGREDSGLTTDE 132

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           ++L     + P +  + SLN+SQAVLL    C E    S          PAT  E+ +  
Sbjct: 133 LSLCRWHATIPTSSEYGSLNLSQAVLLF---CYELGKASDSPGGGRTEIPATSAEMETLF 189

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
             ++ SL+  G+    +    ++  L  I  R EL   E+ +LRG+ S +D
Sbjct: 190 SQMDTSLQRIGFLNE-QNPGHIMRSLRRILFRSELDNRELAILRGMFSQVD 239


>gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
 gi|296387667|ref|ZP_06877142.1| RNA methyltransferase [Pseudomonas aeruginosa PAb1]
 gi|313109235|ref|ZP_07795203.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
 gi|115587063|gb|ABJ13078.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195886|gb|EAZ59949.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
 gi|218770122|emb|CAW25884.1| probable methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|310881705|gb|EFQ40299.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 257

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 11/251 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L+QL LV P + +P   A + ++ A  ++D+ RV   
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA++    +  T+AR+R     +L P+E A    E + +   V ++FGRE  GLTNEE
Sbjct: 66  LEEALSGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------NTP-A 187
           +      +  P +P F SLN++ AV ++ +E     + +  K  K +        NT   
Sbjct: 126 LQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELV 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  +  +LE +L + G+  P EK + ++  L  ++ R  + + E+ +LRGI++   
Sbjct: 186 TADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQ 244

Query: 248 KFSRQSSRRNN 258
           K +R  S + +
Sbjct: 245 KVARGLSYKRS 255


>gi|107028736|ref|YP_625831.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
           1054]
 gi|116690105|ref|YP_835728.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|105897900|gb|ABF80858.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
           1054]
 gi|116648194|gb|ABK08835.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           cenocepacia HI2424]
          Length = 289

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA++ +H+  A TAR R      LAP+ AA   + ++ +G ++ ++FG ER GL NE
Sbjct: 106 TLGEALSGVHWSIALTARTREYGPPRLAPRAAATQASAQVGTG-DIALVFGNERTGLANE 164

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E +   S +   E  T A   E
Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEAGTLAQSDE 224

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 225 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 275


>gi|296135475|ref|YP_003642717.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
           K12]
 gi|295795597|gb|ADG30387.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
           K12]
          Length = 260

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 7/244 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62
           AP L ++    V +LV      N+G  ARA+ N     LRLV PR  D     +  + ++
Sbjct: 15  APSLDDT----VFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFAS 70

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A+ V+ + +V   L +A+AD   + A +AR R+    +  P+    +       G+ V 
Sbjct: 71  GAEDVLKTAQVHGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRVA 130

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            +FG ER+GL+N ++   +A++S P NP + SLN++QAV ++ WE  +   + + +  + 
Sbjct: 131 FVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKGIGLHAVRPAQA 190

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           ++  AT GE+   L ++E +L       P    +K+L  L  +  R EL R+EV +LRG+
Sbjct: 191 ESVAATAGEVQGMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRGV 249

Query: 243 VSTL 246
            + +
Sbjct: 250 CTAV 253


>gi|240949393|ref|ZP_04753734.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240296142|gb|EER46798.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 244

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 13/242 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    L QL LV+P+     E+A S +A A  V+D+ + F++
Sbjct: 9   IVLIETSHSGNIGSTARAMKTMGLAQLCLVSPKQPI-DEQAVSLAAGAKDVLDNTQTFAS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +EAIAD   +  T+AR R+   +++ P++   +  +    G+ V ++FGRER GLTNEE
Sbjct: 68  FEEAIADCQLVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKGK-VALVFGRERIGLTNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE----- 191
           +   +  ++ P NP + SLN++ AV L  +E     +   +     Q  P T+       
Sbjct: 127 LLKCHYHLNIPTNPEYGSLNLAMAVQLACYEIRMAWLAQQDLQKNSQIVPLTESSDYPSN 186

Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             L  F ++ E   +E G+ R       ++  L  ++ R  L   E+ LLRG+++ ++K+
Sbjct: 187 EALEYFFEHTERLYKELGFIR----NDAVMLKLRRLYQRARLETNELNLLRGMLTAIEKY 242

Query: 250 SR 251
            R
Sbjct: 243 RR 244


>gi|119713616|gb|ABL97667.1| RNA methyltransferase [uncultured marine bacterium EB0_39H12]
          Length = 249

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 15/242 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM N    +L LV P++ +PS+ A   S  A  +++   +F+ 
Sbjct: 17  IVLVGTTHPGNIGAAARAMKNMGFRKLILVEPKE-FPSDVATYRSKAAKDILEEAEIFNT 75

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134
           L++A+AD   +  T+AR+R     +L PKE+A  +V N      Q V ++FGRE  GLTN
Sbjct: 76  LEQAVADCELVIGTSARDRKVPWPILNPKESAETVVKN---LPQQKVALVFGREDRGLTN 132

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+ L N  +  P +P + SLN++QAV ++V+E    S+  +E     +V+  NT  T+ 
Sbjct: 133 EELGLCNFHVHIPTDPDYSSLNLAQAVQILVYEIRVASLSDTEDKNYWDVELANTQQTEM 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            L++ +D L   +E    F  V+  +K+L  +   F R  +   E  + RG+ +T+ K  
Sbjct: 193 -LINHMDELMQQVE----FYDVDNPRKLLLRVRRFFKRSNIDVMEANIFRGLFATIQKKL 247

Query: 251 RQ 252
           +Q
Sbjct: 248 KQ 249


>gi|229592455|ref|YP_002874574.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           SBW25]
 gi|229364321|emb|CAY52068.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           SBW25]
          Length = 256

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG VARAM N  LT+L LV PR  +P  +A + ++ A+ +++  +V + 
Sbjct: 7   VVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPRL-FPHHEADARASGANDILEKAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+   + +  T+AR+R     +L P+E    + E    G  + ++FGRE  GLTNEE
Sbjct: 66  LEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAGGAEIALVFGREDSGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVSSEKN---VKEQNTPA 187
           +   +  +  P +P F SLN+  AV +      M W   E      EK+     +    A
Sbjct: 126 LQRCHYHVHIPSDPDFSSLNLGAAVQVLSYEVRMAWLAAEGQPSKVEKDEVASIKSGELA 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  F ++LE +L    +  P EK + ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 186 TMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGILTETQ 244

Query: 248 KFSR 251
           K +R
Sbjct: 245 KAAR 248


>gi|74317179|ref|YP_314919.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
 gi|74056674|gb|AAZ97114.1| RNA methyltransferase TrmH, group 1 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 256

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 8/235 (3%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG  ARAM    L+QL LV+P   +P+ +A + ++ A  V+   RV   L EA+AD   
Sbjct: 24  NIGAAARAMKTMGLSQLVLVDPAV-FPNSQADAMASGAVDVLAGARVCPTLTEALADTTL 82

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAII 144
               +AR R+    VL P EAA+ L   +   Q   V ++FG E  GL+NEE++L   ++
Sbjct: 83  ALGVSARRRDIVAEVLNPAEAALRL---LGEAQRAPVALVFGNETSGLSNEELSLCQGLV 139

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
           + P NP + SLN++ AV ++ +E  +  +        E +  A+  E+  F  +LE +L 
Sbjct: 140 TIPANPDYSSLNLAAAVQVLSYEIRQAWLDRPSWPAPEIDA-ASGDEVEKFYGHLEAALA 198

Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259
           +  +  P    K ML  L  +F R  L +EEV +LRGI+S      R + R   V
Sbjct: 199 DLEFLNPGSPGKLML-KLRRLFARTRLAKEEVNILRGILSAAQDAKRAARRSGTV 252


>gi|294339583|emb|CAZ87942.1| putative RNA methyltransferase TrmH, group 1 [Thiomonas sp. 3As]
          Length = 260

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 7/244 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62
           AP L ++    V +LV      N+G  ARA+ N     LRLV PR  D     +  + ++
Sbjct: 15  APSLDDT----VFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFAS 70

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A+ V+ + +V   L +A+AD   + A +AR R+    +  P+    +       G+ V 
Sbjct: 71  GAEDVLKTAQVHGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRVA 130

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            +FG ER+GL+N ++   +A++S P NP + SLN++QAV ++ WE  +   + + +  + 
Sbjct: 131 FVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKEVGLHAVQPAQT 190

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           ++  AT GE+   L ++E +L       P    +K+L  L  +  R EL R+EV +LRG+
Sbjct: 191 ESVAATAGEVQGMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRGV 249

Query: 243 VSTL 246
            + +
Sbjct: 250 CTAV 253


>gi|68248983|ref|YP_248095.1| tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP]
 gi|145631835|ref|ZP_01787594.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|145632627|ref|ZP_01788361.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           3655]
 gi|229844532|ref|ZP_04464672.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|229846467|ref|ZP_04466575.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|68057182|gb|AAX87435.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|144982554|gb|EDJ90108.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|144986822|gb|EDJ93374.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           3655]
 gi|229810560|gb|EEP46278.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|229812781|gb|EEP48470.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|309972461|gb|ADO95662.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2846]
          Length = 241

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
             EA+ D   +  T+AR R+   +++ P+E A    E++  + G+ + I+FGRER GLTN
Sbjct: 65  FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T  
Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++K
Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232


>gi|301169082|emb|CBW28679.1| predicted methyltransferase [Haemophilus influenzae 10810]
          Length = 241

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
             EA+ D   +  T+AR R+   +++ P+E A    E++  + G+ + I+FGRER GLTN
Sbjct: 65  FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T  
Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++K
Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232


>gi|148827519|ref|YP_001292272.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
 gi|260580557|ref|ZP_05848385.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260582528|ref|ZP_05850318.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
 gi|319775753|ref|YP_004138241.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3047]
 gi|319896709|ref|YP_004134902.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|329123594|ref|ZP_08252154.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           aegyptius ATCC 11116]
 gi|20178339|sp|P44676|Y380_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0380
 gi|5853047|gb|AAD54289.1| HI0380 [Haemophilus influenzae]
 gi|148718761|gb|ABQ99888.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
 gi|260092899|gb|EEW76834.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260094339|gb|EEW78237.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
 gi|317432211|emb|CBY80563.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3031]
 gi|317450344|emb|CBY86560.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3047]
 gi|327469793|gb|EGF15258.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           aegyptius ATCC 11116]
          Length = 241

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
             EA+ D   +  T+AR R+   +++ P+E A    E++  + G+ + I+FGRER GLTN
Sbjct: 65  FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T  
Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++K
Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232


>gi|114563597|ref|YP_751110.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114334890|gb|ABI72272.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           frigidimarina NCIMB 400]
          Length = 240

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  PR   P  ++ + +A A  ++ ++    +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPR-AEPDGQSIALAAGASDILKNLTRVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   + AT+AR+R     +L P+EA + L +   +G  V I+FGRE  GL+NEE
Sbjct: 66  LEEAIADCSLVIATSARSRTLDWPMLDPREAGLKLTQESLNGP-VAIVFGRENHGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      ++ P NP + SLN++QAV ++ +E     +  +E        P T  EL  F 
Sbjct: 125 LQKCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTETPAVTDEYPLTS-ELERFF 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L + G F       +++  L  ++ R  +   E+ +LRGI++++DK
Sbjct: 184 VHLESTLSKTG-FVIKNHPGQVMTKLRRLYTRARIEAPEMNILRGILTSIDK 234


>gi|145634624|ref|ZP_01790333.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittAA]
 gi|145268169|gb|EDK08164.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittAA]
          Length = 241

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
             EA+ D   +  T+AR R+   +++ P+E A    E++  + G+ + I+FGRER GLTN
Sbjct: 65  FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T  
Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++K
Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232


>gi|152996098|ref|YP_001340933.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150837022|gb|ABR70998.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 130/234 (55%), Gaps = 8/234 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     N+G +ARAM N  LT L LV+P D +PSE+A S +A A  ++++  + S 
Sbjct: 7   IVLINTFHPGNVGAIARAMKNMGLTNLYLVDPND-YPSEEATSRAAGAVDLLENATIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+EAIAD   +  T+AR+R     ++  +E A  V+ E +    NV I+FGRE  GL N+
Sbjct: 66  LEEAIADCSLVIGTSARHRTFQLPIMNARECAESVIPEAV--DHNVAIVFGRETTGLLND 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194
           EIA  +  +    N  +P LNISQAV ++ +E  M N   + E   KE      K ++  
Sbjct: 124 EIAQCHRQVYIDANDEYPVLNISQAVQIVTYEIWMANQ--NKENYKKETPEYPHKKDMDL 181

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE +L     F       K+LD L+  F R    ++E+ +LRG+++ + +
Sbjct: 182 FYEHLEETLYGIN-FIIRSHPGKVLDKLHRFFNRSRPEKQELGILRGVLAAVQR 234


>gi|15599012|ref|NP_252506.1| methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
 gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|126168652|gb|EAZ54163.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
          Length = 257

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 11/251 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L+QL LV P + +P   A + ++ A  ++D+ RV   
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R     +L P+E A    E + +   V ++FGRE  GLTNEE
Sbjct: 66  LEEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------NTP-A 187
           +      +  P +P F SLN++ AV ++ +E     + +  K  K +        NT   
Sbjct: 126 LQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELV 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  +  +LE +L + G+  P EK + ++  L  ++ R  + + E+ +LRGI++   
Sbjct: 186 TADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQ 244

Query: 248 KFSRQSSRRNN 258
           K +R  S + +
Sbjct: 245 KVARGLSYKRS 255


>gi|328950108|ref|YP_004367443.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450432|gb|AEB11333.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 235

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P+   N+GMVARAM NF L +L LV P     SE  R SS   D V++  R+   
Sbjct: 4   VVLVGPREAANVGMVARAMKNFGLKELVLVAPEIRDMSEAYRLSSRAHD-VLERARIVPT 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD   +  TTAR R  +  + A   AA  L     +   V ++FGRE +GL NEE
Sbjct: 63  LDEAIADCVLVAGTTARRRERYAGLAATPRAAAGLIRAAAARGPVALLFGRENFGLFNEE 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   + ++  P  P + SLN++QAVLL+ +E     +  S+     +  PA    L ++ 
Sbjct: 123 LDRCHYVLHIPTAPDYASLNLAQAVLLVAYE-----LFQSQAGALPETDPAPAASLEAYF 177

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
             LE  L E GY  P  +   ++     +  +  L  EEV +LRG++
Sbjct: 178 RDLEAYLIEIGYTDP-PRLPSVMRHFRRMAHKALLTEEEVRMLRGLL 223


>gi|113460425|ref|YP_718487.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|170717774|ref|YP_001783505.1| RNA methyltransferase [Haemophilus somnus 2336]
 gi|112822468|gb|ABI24557.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|168825903|gb|ACA31274.1| RNA methyltransferase, TrmH family, group 1 [Haemophilus somnus
           2336]
          Length = 246

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 133/240 (55%), Gaps = 18/240 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L QL LV P+ G   E+A + +A A+ V+ S  V  +
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLNQLCLVAPKQGI-DEQAVALAAGAEDVVKSAVVADS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI---FSGQNVGIIFGRERWGLT 133
             +A+AD   I  T+AR R+   +++ P+E A    E++    S Q V I+FGRER GLT
Sbjct: 66  FSQAVADCSLIIGTSARLRHLQSTLIEPRECA----EKVIQSLSSQKVAIVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-----QNTPAT 188
           N+E+   +  ++ P NP + SLN++ AV L+ +E +  + ++S K +K+      N   T
Sbjct: 122 NDELLKCHYHLTIPANPEYSSLNLAMAVQLISYE-LRLAWLASLKELKQPFSVIANNYPT 180

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             EL  F  + E   ++ G+     + + ++  L  ++ R +L + E+ +LRG++S ++K
Sbjct: 181 FQELEHFFAHTEQLYQQLGFI----QNQGVMKKLRRLYQRVQLEKNELNILRGMLSAVEK 236


>gi|307543985|ref|YP_003896464.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
           2581]
 gi|307216009|emb|CBV41279.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
           2581]
          Length = 247

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 3/234 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L+      NIG  ARAM N  L  L LV PR    +    S ++ AD ++ + R   N
Sbjct: 7   IVLIGTSHPGNIGGTARAMHNMGLEDLALVAPRCEPITADTVSRASGADALVHNARTVDN 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
           L++A+ D   +   +AR+RN    ++ P+E    L   + S Q  V ++FGRE  GLTN 
Sbjct: 67  LEDAVGDCTLVVGASARSRNLPWPMVTPRELGERLPTELASPQGRVALVFGREDSGLTNT 126

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLS 194
           E+   +A +  P NP F SLN++ AV ++ +EC       S +  +    P A+  EL  
Sbjct: 127 EMQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLACQAESPEMQEPDAAPLASHEELEH 186

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +  +LE +L + G+  P +  ++++  L    +R    R E+ +LRGI+S   +
Sbjct: 187 YFAHLERTLIDIGFHDP-DMPRQLMARLRRFTLRAHPERMELNILRGILSATQR 239


>gi|212703150|ref|ZP_03311278.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
 gi|212673416|gb|EEB33899.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
          Length = 253

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 22/222 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75
           ++LV  +  ENIGM ARA  N     +RLV P + W  EKAR  ++     V+D V+V  
Sbjct: 8   VVLVQTRFPENIGMAARACVNMGSRSIRLVAP-ERWDREKARPLATPKGQGVLDDVQVLP 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++  A+AD   +  TTAR     +S+L+P++AA  + + +  G+ V I+FG E  GL N+
Sbjct: 67  DVSAAVADCSLVIGTTARTGGWRRSLLSPEQAAGEVAQALERGEKVAIVFGPEDRGLDND 126

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGELL 193
            I     +++ P NP   SLN++Q+VLL+++EC + ++ + +     + TPA    G ++
Sbjct: 127 AIQHCQRLVTIPTNPEASSLNLAQSVLLLLYECAK-AVRARQHEAAGEKTPAEGGSGRVI 185

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
           S  DY                 +++LD+L  + +R + +  +
Sbjct: 186 SSADY-----------------ERLLDNLKDMLLRLDCLHGD 210


>gi|107103337|ref|ZP_01367255.1| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2]
          Length = 251

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 11/251 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L+QL LV P + +P   A + ++ A  ++D+ RV   
Sbjct: 1   MVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDT 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R     +L P+E A    E + +   V ++FGRE  GLTNEE
Sbjct: 60  LEEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEE 119

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------NTP-A 187
           +      +  P +P F SLN++ AV ++ +E     + +  K  K +        NT   
Sbjct: 120 LQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELV 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  +  +LE +L + G+  P EK + ++  L  ++ R  + + E+ +LRGI++   
Sbjct: 180 TADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQ 238

Query: 248 KFSRQSSRRNN 258
           K +R  S + +
Sbjct: 239 KVARGLSYKRS 249


>gi|227114272|ref|ZP_03827928.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 228

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 17/227 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V          AR  +  +  ++D+V++FS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGST-VHQEPAARWVAHGSGDILDNVQMFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+ F  ATTAR+R  +     P E   VL E++    +  ++FGRE  GLTNEE
Sbjct: 64  LAEALADVDFTVATTARSRAKYHYYCTPAELTDVLQEKVQWMASAALVFGREDVGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF- 195
           + L++ +   P+   +PSLN+ QAV++  ++  E   V  E        PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVKPEA-----TQPAVAGQLSALR 178

Query: 196 --LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
             +D L ++L        VE  +K+ D L+    R E  R+   L R
Sbjct: 179 DRMDRLLVTL-------AVEDDEKLRDWLHQRLGRLE-QRDTAMLHR 217


>gi|16272328|ref|NP_438541.1| hypothetical protein HI0380 [Haemophilus influenzae Rd KW20]
 gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 241

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 134/238 (56%), Gaps = 18/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
             EA+ D   +  T+AR R+   +++ P+E A    E++  + G+ + I+FGRER GLTN
Sbjct: 65  FDEAVDDCPLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T  
Sbjct: 120 EELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTTD- 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++K
Sbjct: 179 QLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232


>gi|77165123|ref|YP_343648.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
           19707]
 gi|254433993|ref|ZP_05047501.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
           AFC27]
 gi|76883437|gb|ABA58118.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
           19707]
 gi|207090326|gb|EDZ67597.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
           AFC27]
          Length = 247

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 3/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L  L LVNP+  +P  +A + ++ AD ++   +V ++
Sbjct: 8   IVLVETTHPGNIGAAARAMRTMGLCHLYLVNPKR-FPCAEATAMASGADKLLAQAKVCTS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AI     ++  +AR+R+    VL  +++ +++ +    G  V I+FGRE  GL+N E
Sbjct: 67  LAQAITGCQKVFGLSARSRSISWPVLNTRDSGVLVVQEALRGGEVAIVFGRENSGLSNLE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   N  +  P NP + SLN++ AV +M +E    S++   ++  E  + A+ GE+  F 
Sbjct: 127 LDRCNYWVHIPSNPTYSSLNLAAAVQVMAYEVRMASMMDDSRHSAESPS-ASIGEIEGFF 185

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L +  +       K ++  L  +F R  L   E+ +LRGI++ + K
Sbjct: 186 RHLEQTLIKIDFLNS-SNPKLLMRRLRCLFFRAHLNVREINILRGILTAVQK 236


>gi|189424323|ref|YP_001951500.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
 gi|189420582|gb|ACD94980.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
          Length = 245

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 8/237 (3%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S  G  +ILV+PQ   NIGMV RAM N  L++LRLV   D    E  + + +  D +++ 
Sbjct: 4   SLTGLSVILVEPQFPGNIGMVCRAMKNMGLSRLRLVAGCDHLHPEAFKFAVSARD-LLEQ 62

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +F +L +A+AD+    ATT R+    + +L+P +AA  L +   +  +  ++FGRE  
Sbjct: 63  AELFDSLADALADISVSVATTRRSGKYRQELLSPPQAAQALLQ---APGSAALVFGREDH 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+  +++L     + P +  + SLN++QA L+  +E       ++ +    + TPA  G
Sbjct: 120 GLSTADLSLCTLQATIPSSSEYGSLNLAQAALIFCYELFG---AATAETGSLRRTPAPSG 176

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           EL     ++E +L   G+  P +    ++  L  IF R  L   EV +LRG++S +D
Sbjct: 177 ELEPLFTHMEQTLLRIGHLNP-QNPGHIMRSLRRIFFRSGLDSREVAILRGMLSQID 232


>gi|92114283|ref|YP_574211.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91797373|gb|ABE59512.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 246

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+ L LVNPR  +P  +A   +A A  VID+ RV  +
Sbjct: 7   IVLVQTFHPGNIGQAARAMKTMGLSDLVLVNPRS-FPDAEATRLAAGATDVIDNARVVEH 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQN--VGIIFGRERWGL 132
           + +A+ D   +   +AR     +S+  P   +   + +E I   Q+  V ++FGRER+GL
Sbjct: 66  IAQAVGDCVQVVGASAR----LRSLPLPHFDDPEPMASELIEHAQDAPVALVFGRERFGL 121

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKG 190
           TN+EI      +S P NP +  LN++QAV ++ +E               Q  P+  T+ 
Sbjct: 122 TNDEIRHCTHQVSIPANPEYGVLNLAQAVQILAYEVRRAWRHHQASPATSQTPPSLPTRD 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           ++  F  +L  +L   G+    +   +  D L ++F R +  R+E+ +LRG++STL+K
Sbjct: 182 QMAHFEAHLHEALVTSGFL--TQPHARTEDHLRALFARAQPSRKELSILRGVLSTLEK 237


>gi|78066859|ref|YP_369628.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
 gi|77967604|gb|ABB08984.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
          Length = 289

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++ +H+  A TAR R      LAP+ AA     ++ +G ++ ++FG ER GL NE
Sbjct: 106 TLGDALSGVHWSIALTARTREYGPPRLAPRAAATQACAQVGTG-DIALVFGNERTGLANE 164

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E++   S +   E  T A   E
Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEHASEPSAQPSGEAGTLAQSDE 224

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRG+ 
Sbjct: 225 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGVA 275


>gi|312962919|ref|ZP_07777406.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
 gi|311282946|gb|EFQ61540.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
          Length = 256

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 19/248 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG VARAM N  LT+L LV PR  +P  +A + ++ A+ +++  +V + 
Sbjct: 7   VVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPRV-FPHHEADARASGANDLLEKAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+   + +  T+AR+R     +L P+E    +      G  + ++FGRE  GLTNEE
Sbjct: 66  LEDALVGCNLVLGTSARDRRIPWPLLDPRECGSKVVVEAVGGAEIALVFGREDSGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-------------MENSIVSSEKNVKEQ 183
           +   +  +  P +P F SLN+  AV ++ +E              ME   V+S K+    
Sbjct: 126 LQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEVRMAWLAAAGQPSKMEKEEVASTKS---- 181

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              AT  EL  F ++LE +L    +  P EK + ++  L  ++ R  + R E+ +LRGI+
Sbjct: 182 GELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGIL 240

Query: 244 STLDKFSR 251
           +   K +R
Sbjct: 241 TETQKAAR 248


>gi|330817527|ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
           BSR3]
 gi|327369920|gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
           BSR3]
          Length = 258

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 127/250 (50%), Gaps = 13/250 (5%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60
           P  PQ   +A+    +LV+P    N+G  ARA+     +QL LV PR  +     +A + 
Sbjct: 8   PAPPQAFRAAR---FVLVEPSHPGNVGAAARALKTMGFSQLVLVAPRVAEVLADPEAIAM 64

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ + R+ + L EA+A + +  A TAR+R      LAP+ AA     R   G  
Sbjct: 65  ASGADDVLAATRIVATLDEALAGVSWSAALTARSREYGPPRLAPR-AAAGEARRQLDGGE 123

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSS 176
           +  +FG ER GL+NE +   +AI   P NP + SLN+SQA+ ++ +E     +E    ++
Sbjct: 124 IAFVFGNERVGLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELRVALLEGQ--AA 181

Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
           E +     T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV
Sbjct: 182 EHHDGAAGTLAQADEIEKMFAHLEQALVALEFLDP-RNPKKLMPRLRRLFSRAGLEREEV 240

Query: 237 FLLRGIVSTL 246
            +LRG+   +
Sbjct: 241 NILRGVAKHI 250


>gi|261823098|ref|YP_003261204.1| RNA methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261607111|gb|ACX89597.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
          Length = 228

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 13/225 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V          AR  +  +  ++D+V+VFS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGST-AHQEPAARWVAHGSGDILDNVQVFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F+    P E   +L E+I    +  ++FGRE  GLTNEE
Sbjct: 64  LADALADVDFTVATTARSRAKFRYYCTPAELTDLLQEKIQWMASAALVFGREDTGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGELLSF 195
           + L++ +   P+   +PSLN+ QAV++  ++      ++    VK +   PA  G+L + 
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVFCYQ------LAGLMQVKPDAVQPAVAGQLSAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
            D L+  L        VE  +K+ D L+    R E  R+   L R
Sbjct: 178 HDRLDRLLVNLA----VEDDEKLRDWLHQRLGRLE-QRDTAMLHR 217


>gi|254491749|ref|ZP_05104928.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
           thiooxidans DMS010]
 gi|224463227|gb|EEF79497.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
           thiooxydans DMS010]
          Length = 253

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV      NIG  ARAM    L+ L LV+P+  +PS +A + ++ AD ++ + +V  +L
Sbjct: 21  VLVGTTHPGNIGAAARAMKTMGLSNLHLVSPK-LYPSAEATARASGADDILHTAQVHDSL 79

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+   H  +A +AR R+    V+ P++A   L E+     ++ I+FGRE  GL+NEE+
Sbjct: 80  DEALVGCHHAFAMSARLRHLPVPVVNPRQAVEQL-EKFDDNTHIAIVFGREHSGLSNEEL 138

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLSFL 196
                +I+ P NP + SLN++ AV ++ +E  M          + EQ    T  +L    
Sbjct: 139 DRCQYLINIPANPDYSSLNLAAAVQVLAYELKMSFQPQIDFGRIGEQREAITNDDLAHLY 198

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           D+ E SL   G+  P E  + ++  +  +F R +L + E+ ++ GI+
Sbjct: 199 DHFERSLTTIGFLDP-ENPRHLMRRIKRLFNRADLDKNELHIMHGIL 244


>gi|197119062|ref|YP_002139489.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197088422|gb|ACH39693.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 245

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 120/236 (50%), Gaps = 16/236 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
           ++LV  Q   NIGMV RAM N  L+ LRLVNP   D   + K   S+ N   ++DS R+F
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNPCQVDHLDAVKFAVSARN---LLDSARIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWG 131
           ++L++AIAD  F  ATT R+      +  P E    + ER  +      + ++FGRE  G
Sbjct: 66  TSLEDAIADCEFSVATTRRHGKYRNEISTPAE----IVERFSACAPASRMALVFGREDSG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LT +E+AL     +      F SLN+SQAVL+  +E ++     +   VK+    A    
Sbjct: 122 LTTDEVALCRWQATIETADEFGSLNLSQAVLIFCYEFLKG---VAPAPVKQARDIAGSAS 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           L     ++E S    GY  P +    M+  L  IF R EL   EV  LRG++S +D
Sbjct: 179 LEPLYQHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQID 233


>gi|332289843|ref|YP_004420695.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
 gi|330432739|gb|AEC17798.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
          Length = 248

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 15/248 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+QL LV+P+   P+E++ + SA AD V+    + S+
Sbjct: 8   IVLVETSHPGNIGSAARAMKTMGLSQLYLVSPKV-LPNEESIALSAGADDVVKQAHIVSS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +EAIAD   +  T+AR R+   + + P++   +   R   G+ V I+FGRER GLTNEE
Sbjct: 67  FEEAIADCSLVIGTSARARHLTTTAVTPRDCGELAIVRSAHGK-VAIVFGRERIGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-----PA---T 188
           +   +  ++ P NP + SLN++ AV L+ +E +  + +  ++  +  ++     PA    
Sbjct: 126 LLKCHYHLNIPANPEYSSLNLAMAVQLVSYE-VRMAYLQKQQGYQLHHSRVAEMPAEGVV 184

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             EL  F    E   ++ G+     +   ++  L  +++R  + R E+ +L+G+++ ++K
Sbjct: 185 AEELEYFFHKTEQVYQQLGFI----QNSAVMKKLRRLYLRTAIQRNELNILQGMLTAVEK 240

Query: 249 FSRQSSRR 256
              +S R+
Sbjct: 241 VITESHRK 248


>gi|227327991|ref|ZP_03832015.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 228

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 17/227 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V          AR  +  +  ++D+V++FS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVHQEPAARWVAHGSGDILDNVQMFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+ F  ATTAR+R  +     P E   VL E++    +  ++FGRE  GLTNEE
Sbjct: 64  LAEALADVDFTVATTARSRAKYHYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF- 195
           + L++ +   P+   +PSLN+ QAV++  ++  E   V  E        PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVKPEA-----AEPAVAGQLSALR 178

Query: 196 --LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
             +D L ++L        VE  +K+ D L+    R E  R+   L R
Sbjct: 179 DRMDRLLVTL-------AVEDDEKLRDWLHQRLGRLE-QRDTAMLHR 217


>gi|254786631|ref|YP_003074060.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
 gi|237685931|gb|ACR13195.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
          Length = 261

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 134/247 (54%), Gaps = 13/247 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++V+     NIG  ARAM N  L++L LV+P++ +P+EKA   +A A  V+++ RV S 
Sbjct: 11  MVMVNTTHPGNIGAAARAMKNMGLSELVLVDPKE-FPAEKAVWRAAGATDVLENARVVST 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           L EAI+D   +  T+AR R     +L P+E      +R +   +   V ++FGRE  GLT
Sbjct: 70  LDEAISDCGLVIGTSARERRIPWPLLTPRECG----DRCWFEAAKHPVAVVFGREDRGLT 125

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----PATK 189
           NEE+   N  +  P NP + +LNIS A+ ++ +E   +++ + E      +     PA  
Sbjct: 126 NEELHKCNYHVHIPSNPEYSALNISAALQVICYEIRMSALTAQEGKAPHFDDWDMPPADN 185

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           G L  +  +LE +L +  +  P +  ++ +  L  +F R  + + E+ +LRG+++++  +
Sbjct: 186 GALEHYYAHLEDTLIKLEFLNP-DNPRQTVTRLRRLFNRIRMDQMELNILRGMLTSVQNY 244

Query: 250 SRQSSRR 256
              +  +
Sbjct: 245 IYHTDEK 251


>gi|77919150|ref|YP_356965.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77545233|gb|ABA88795.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter
           carbinolicus DSM 2380]
          Length = 244

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 11/241 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+PQ   NIG V RAM NF  + LRLVNP      + AR  +  A  +++  R+F 
Sbjct: 7   CVVLVEPQGPLNIGSVCRAMMNFGFSDLRLVNPVADHLCDDARRMAVKASGILEGARLFP 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----SGQNVGIIFGRERWG 131
           +L  A+AD +  Y TT R     +  L P +AA     R F     G  V  +FGRE  G
Sbjct: 67  DLPSALADCNLAYGTTRRFGKYREDFLHPDDAA-----REFIPATQGGRVAWVFGREDKG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L   E+ L    ++ P +   PS+N++Q+V + ++E    + ++  K    ++T ++   
Sbjct: 122 LETSELDLCQRFVTIPTDDACPSMNLAQSVSICLYETSRVAAIACGKTAGRKST-SSIAT 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L +   ++  +L + G+  P +    +L     IF R  L   EV +LRG+ S LD  + 
Sbjct: 181 LEAMYRHMRDTLTDIGFLDP-QNPDHILRSFRRIFGRAGLNDREVRILRGLWSRLDWLNG 239

Query: 252 Q 252
           Q
Sbjct: 240 Q 240


>gi|261345350|ref|ZP_05972994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rustigianii DSM 4541]
 gi|282566393|gb|EFB71928.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rustigianii DSM 4541]
          Length = 243

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 130/241 (53%), Gaps = 9/241 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    L+ L LVNP    P   A + SA A  VI + ++ ++
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHAIALSAGASDVIGNAKIVTS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     +  T+AR+R     ++ P+E  +   ++  +   V IIFGRER GLTNEE
Sbjct: 66  LDEALEGCKLVIGTSARSRTLPWPMVEPRECGVKSVQQ-SNESPVAIIFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKEQNTPATKGE 191
           +   N  +  P NP + SLN++ AV L+ +E     +  +EKN     V E   P  + +
Sbjct: 125 LQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAINEKNTQKSAVDEVEYPPAE-D 183

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE  L E G+ R       +++ L  +F R  +  +E+ +LRGI+++++K+++
Sbjct: 184 LERFYVHLETVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSMEKWAK 242

Query: 252 Q 252
           +
Sbjct: 243 K 243


>gi|152984133|ref|YP_001346680.1| putative methyltransferase [Pseudomonas aeruginosa PA7]
 gi|150959291|gb|ABR81316.1| probable methyltransferase [Pseudomonas aeruginosa PA7]
          Length = 308

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L+QL LV P + +P   A + ++ A  ++D+ RV  +
Sbjct: 58  VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDS 116

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R     +L P+E A    E + +     ++FGRE  GLTNEE
Sbjct: 117 LEEALVGCSVVLGTSARDRRIPWPLLDPRECAATCLEHLEANGEAALVFGREYAGLTNEE 176

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--------NTP-A 187
           +      +  P +P F SLN++ AV ++ +E     + +  K  K +        NT   
Sbjct: 177 LQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELV 236

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  +  +LE +L + G+  P EK + ++  L  ++ R  + + E+ +LRGI++   
Sbjct: 237 TADELELYYAHLEKTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQ 295

Query: 248 KFSR 251
           K +R
Sbjct: 296 KVAR 299


>gi|238918601|ref|YP_002932115.1| RNA methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868169|gb|ACR67880.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella ictaluri
           93-146]
          Length = 238

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 98/181 (54%), Gaps = 9/181 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75
           I+LV P   EN+G  ARAM     T LR+V+ R DG     AR  +  A  ++D    F 
Sbjct: 5   IVLVAPARAENVGAAARAMKTMGFTSLRIVDSRADG--ESAARWVAHGAGDILDGACHFD 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+ D+ F  A+TAR+R  F     P+E   VL E+     N  ++FGRE  GLTN+
Sbjct: 63  TLAQALEDIDFSVASTARSRARFHYYCTPQELCAVLQEKQHWMANCALVFGREDSGLTND 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL + +   P+   +PSLN+ QAV++  ++      +SS   V+    PA +G+ L+ 
Sbjct: 123 ELALVDLLTGVPMAADYPSLNLGQAVMVFCYQ------LSSLMQVQAALAPAAQGDQLTA 176

Query: 196 L 196
           L
Sbjct: 177 L 177


>gi|253700177|ref|YP_003021366.1| RNA methyltransferase TrmH [Geobacter sp. M21]
 gi|251775027|gb|ACT17608.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M21]
          Length = 245

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 120/236 (50%), Gaps = 16/236 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
           ++LV  Q   NIGMV RAM N  L+ LRLVNP   D   + K   S+ N   ++DS R+F
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNPCQVDHLDAVKFAVSARN---LLDSARIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWG 131
           ++L++A+AD  F  ATT R+      +  P E    + ER  +      + ++FGRE  G
Sbjct: 66  TSLEDALADCEFSVATTRRHGKYRNEISTPAE----IVERFSACAPASRLALVFGREDSG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LT +E+AL     +      F SLN+SQAVL+  +E ++    +  K  +E    A    
Sbjct: 122 LTTDEVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLKGVAPAPAKQAREL---AGSAS 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           L     ++E S    GY  P +    M+  L  IF R EL   EV  LRG++S +D
Sbjct: 179 LEPLYQHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQMD 233


>gi|260912947|ref|ZP_05919432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
           dagmatis ATCC 43325]
 gi|260632937|gb|EEX51103.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
           dagmatis ATCC 43325]
          Length = 241

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 134/246 (54%), Gaps = 19/246 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+ L LV PR     E+A + SA A+ V+    +  +
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLSHLYLVAPRQAI-DEQAIALSAGAEDVVKQAVIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A+AD   +  T+AR R+   +++ P++ A+   E + SGQ V I+FGRER GLTNEE
Sbjct: 66  FDKAVADCSLVVGTSARLRHLQNTLIEPRKCAMKAVEAVKSGQ-VAIVFGRERIGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGELL-- 193
           +      ++ P NP + SLN++ AV L+ +E +  + +S    VKE + + +T G++   
Sbjct: 125 LLKCRYHLTIPANPEYSSLNLAMAVQLVCYE-LRMAFLS----VKEMSLSLSTIGKIYPN 179

Query: 194 -----SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                 F  + E    E G+     + + ++  L  ++ R EL + E+ +LRG++S ++K
Sbjct: 180 FSDIEHFFQHTERLYTELGFI----QNQSVMQKLRRLYQRAELEKNELNILRGMLSAVEK 235

Query: 249 FSRQSS 254
             + SS
Sbjct: 236 RIKSSS 241


>gi|315633898|ref|ZP_07889187.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Aggregatibacter segnis ATCC 33393]
 gi|315477148|gb|EFU67891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Aggregatibacter segnis ATCC 33393]
          Length = 255

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 129/254 (50%), Gaps = 9/254 (3%)

Query: 1   MTPYAPQLQNSAKGPV-----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           M  YAP L N  K  +     I+L++     NIG  ARAM    LT L LV P+ G   +
Sbjct: 1   MVEYAPLL-NKIKMIMLENIRIVLIETSHSGNIGSTARAMKTMGLTDLVLVAPKQGV-DD 58

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +A + +A A+ V+ S  V  N  EA+AD   +  T+AR R+   S++ P+E         
Sbjct: 59  QAIALAAGAEDVVKSAVVVENFSEAVADCSLVIGTSARLRHLQNSLIEPRECGEKAINHA 118

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIV 174
            SG+ V I+FGRER GLTNEE+   +  ++ P NP + SLN++ AV L+ +E  M     
Sbjct: 119 ISGK-VAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLAT 177

Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
             E+N K   T       +  LDY     E+        + + ++  L  ++ R E+ + 
Sbjct: 178 QREENQKMTQTQPDVYPQMQELDYFFTRTEQLYQSLGFIQNQGVMQKLRRLYSRAEVEKT 237

Query: 235 EVFLLRGIVSTLDK 248
           E+ +L G++S ++K
Sbjct: 238 ELHILLGMLSAVEK 251


>gi|29654438|ref|NP_820130.1| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|29541705|gb|AAO90644.1| rRNA methylase, SpoU family [Coxiella burnetii RSA 493]
          Length = 240

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    NIG  ARAM     ++L LV P + +P E+A + +A AD V+ S RV  +
Sbjct: 7   IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASARVVDD 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+   + ++ T+AR+R     +  P+E A    + +    N+ I+FGRER GLTNEE
Sbjct: 66  LTAALEGCNLVFGTSARSRTLPWPLKTPRECA---EQSVQHQGNIAIVFGRERSGLTNEE 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192
           +A     ++ P    F SLN++QAV ++ +E     + + +   + QNTP    AT  ++
Sbjct: 123 LAQCQYHVTIPTEAAFSSLNLAQAVQILTYEIRMAKLNAVDP--RHQNTPIQQLATADQM 180

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L +  +  P ++ K ++  L  +F R ++   E+ +LRGI++++ +
Sbjct: 181 EGFYVHLEKTLVDIKFIDP-KQPKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235


>gi|114047315|ref|YP_737865.1| RNA methyltransferase [Shewanella sp. MR-7]
 gi|113888757|gb|ABI42808.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-7]
          Length = 241

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV      NIG  ARAM    L+ L L  PR     +    ++  +D +   V+V S 
Sbjct: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHLVKVDS- 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   + AT+AR+R     +L P+EA   L     SG  V I+FGRE  GLTNEE
Sbjct: 66  LEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSGP-VAIVFGRENHGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      ++ P NP + SLN++QAV ++ +E     +  +E    E+  P +  +L  F 
Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLS-ADLERFF 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK
Sbjct: 184 VHLESTLSSTGFIIK-NHPGQVMTKLRRLFSRARIESQEMNILRGILTSIDK 234


>gi|120554047|ref|YP_958398.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120323896|gb|ABM18211.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
           VT8]
          Length = 287

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 142/268 (52%), Gaps = 19/268 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  L  L LVNP+  +P E + + +++A  V+D  +V S+
Sbjct: 22  IVLVETTHSGNIGAVARAMKNMGLGNLWLVNPKS-FPDEASYARASSASDVLDRAQVVSS 80

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA++D   +  T+AR R     V++P +AA+   E    G  V ++FGRE  GL+NEE
Sbjct: 81  LDEALSDCVLVMGTSARGRKVPWPVISPPQAAVTAAENSARGP-VALVFGRESNGLSNEE 139

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-----VSSEKNVKEQNTPATKG- 190
           +   +  I  P NP + SLN++ AV ++ +E   + +     V S   ++    P  +G 
Sbjct: 140 LQRCHYHIHIPSNPDYSSLNLAMAVQVVCYELRMHYLRGLEEVESSPYLESMVEPGDRGW 199

Query: 191 --------ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
                   ++  F  +LE  L++  + R  E  ++++  L  +F R +L + E+ +LRGI
Sbjct: 200 DVPPATVNDVEGFFGHLEQVLQDVDFHR-RENPRQLMTRLRRLFQRAKLDQMEINILRGI 258

Query: 243 VSTLDK--FSRQSSRRNNVLLQKTEKSE 268
           ++++ K   +R+   RN       ++ +
Sbjct: 259 LTSVQKATVAREGVGRNTTAAGAVDEGQ 286


>gi|50122813|ref|YP_051980.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613339|emb|CAG76790.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 228

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 6/184 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V             + A+ D ++D+V+VFS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGSTVHQEPAARWVAHASGD-ILDNVQVFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  ++    P E   VL E++    +  ++FGRE  GLTN+E
Sbjct: 64  LAEALVDVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++  E   V  E        PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAEFMQVKPEA-----VQPAVAGQLSALR 178

Query: 197 DYLE 200
           D L+
Sbjct: 179 DRLD 182


>gi|77460836|ref|YP_350343.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens Pf0-1]
 gi|77384839|gb|ABA76352.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 264

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 136/260 (52%), Gaps = 16/260 (6%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           +P AP +  + +   ++LV+     NIG  ARAM N  L++L LV+PR  +P  +A + +
Sbjct: 3   SPRAPAVLQNIR---VVLVNTSHPGNIGGTARAMKNMGLSRLVLVDPRV-FPHHEADARA 58

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A  ++++ +V + L++A+   + +  T+AR+R     +L P+E    + E    G  +
Sbjct: 59  SGAGDILENAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAEI 118

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL------MVWECMENSIVS 175
            ++FGRE  GLTN+E+   +  +  P +P F SLN+  AV +      M W   +     
Sbjct: 119 ALVFGREDSGLTNDELQRCHYHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAQGQPTK 178

Query: 176 SEK----NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
            EK    +VK     AT  EL  F ++LE +L    +  P EK + ++  L  ++ R  +
Sbjct: 179 IEKEEVASVKSAEL-ATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSV 236

Query: 232 MREEVFLLRGIVSTLDKFSR 251
            R E+ +LRGI++   K +R
Sbjct: 237 SRAEMNILRGILTETQKAAR 256


>gi|332283456|ref|YP_004415367.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330427409|gb|AEC18743.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 257

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 125/247 (50%), Gaps = 13/247 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I+V P    N+G  ARA+       L LV PR  D      A+S ++ A  V+ SVR+  
Sbjct: 11  IMVRPSHPGNVGAAARAIKTMGFHDLCLVAPRFPDVLELPDAQSLASGATDVLASVRIVP 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133
            L+EA+A +   +A TAR R         ++AA V  + + S ++  V I+ G ER GLT
Sbjct: 71  TLEEALAPITLAFALTARARMLGPPACDIRKAAQVSCQHLQSTRHARVAIVLGTERSGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--------SIVSSEKNVKEQNT 185
           NE++AL   I   P NP + SLN+SQA+ L  WE             + S+E    E + 
Sbjct: 131 NEDVALCQRICHIPANPEYSSLNVSQALQLAAWELRYTLASAASLPLLPSTEGQANEGDQ 190

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A   ++ + + + E ++ E G+  P    KK++  +  +F R  L  +EV +LRG+ + 
Sbjct: 191 AAPGEKVQALMTHWEQAITEVGFLDPAH-PKKLMPRMRHMFGRNGLTHDEVDMLRGLCTA 249

Query: 246 LDKFSRQ 252
           + K +++
Sbjct: 250 MIKAAKK 256


>gi|222056219|ref|YP_002538581.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
 gi|221565508|gb|ACM21480.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
          Length = 251

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 122/234 (52%), Gaps = 12/234 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV  Q   NIGMV RAM N  L  LRLVNP       +A   + +A  V+D  R+F++
Sbjct: 15  IVLVGTQSPGNIGMVCRAMKNMGLYDLRLVNPCQ-VDHPEAHKFAVSARDVLDGARLFTS 73

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLT 133
           L++A+ D     ATT R+    + +  P+E A    ER+ S      V ++FGRE  GLT
Sbjct: 74  LEDALRDCEISVATTRRHGKYRQEISTPQEIA----ERVRSQAAMHRVALVFGREDSGLT 129

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            EE+AL     + P    + SLN++QAVL+  +E  +   VS  ++ +     A    + 
Sbjct: 130 TEEVALCRWQSTIPTADEYGSLNLAQAVLIFCYELHKRQEVSPAQDTR---LLADSAAME 186

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +    +E +L + G+  P E    ++  L  I+ R EL   EV +LRG++S +D
Sbjct: 187 AMYRQMEKTLLKIGFLNP-ENPAHIMRTLRRIYSRAELDEREVAVLRGMMSQID 239


>gi|212710634|ref|ZP_03318762.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
           30120]
 gi|212686715|gb|EEB46243.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
           30120]
          Length = 243

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 9/241 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    L+ L LVNP    P   + + SA A  VI + +V  +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHSIALSAGASDVIGNAKVVKS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     +  T+AR+R     ++ P+E  +   E+      V I+FGRER GLTNEE
Sbjct: 66  LDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQAKDAP-VAIVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-----EQNTPATKGE 191
           +   N  +  P NP + SLN++ AV L+ +E     +  +EKN +     E   P  + +
Sbjct: 125 LQRCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAIAEKNTQTSVDDEVEYPPAE-D 183

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE  L E G+ R       +++ L  +F R  +  +E+ +LRGI+++++K+++
Sbjct: 184 LERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSMEKWAK 242

Query: 252 Q 252
           +
Sbjct: 243 K 243


>gi|89095322|ref|ZP_01168240.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
 gi|89080397|gb|EAR59651.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
          Length = 248

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 130/242 (53%), Gaps = 16/242 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N +  +L LV P+  +P   A + ++ A  ++++  V   
Sbjct: 7   IVLVNTTHPGNIGGVARAMKNMDFAELHLVEPKK-FPHVNADARASGATDLLENALVHET 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   +  T+AR R+    V+ P+E A ++   +   + + I+FGRE  GLTNEE
Sbjct: 66  LEEAIADCQLVVGTSARGRHIPWPVVDPRELAAIVGP-VMDEKKIAIVFGREDRGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           + L +  +  P NP F SLN++ AV ++ +E    S+ ++E     ++ P          
Sbjct: 125 LHLCHYHVHIPSNPEFSSLNLAAAVQVITYELRMASLYAAE---NAEHRPQWGTDWDIDL 181

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A  G+L     +LE +L +  +  P E  ++++  L  +++R    + EV +LRGI++  
Sbjct: 182 ADSGDLERLFAHLEETLVDIEFLDP-ENPRQLMPRLRRLYLRAIPDKVEVNVLRGILTAT 240

Query: 247 DK 248
            K
Sbjct: 241 QK 242


>gi|160871876|ref|ZP_02062008.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
 gi|159120675|gb|EDP46013.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
          Length = 239

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 129/235 (54%), Gaps = 11/235 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L QL LV P+  +P   A   +++A  ++    V   
Sbjct: 8   IVLVKTTCPGNIGATARAMKTMGLKQLYLVAPQ-SFPHINASVRASHAIDILADAIVVDQ 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGLTN 134
           L+EA+ D   ++ T+ R R      L P+ AA    E+I +   Q + I+FG+ER GLTN
Sbjct: 67  LEEALGDCQLVFGTSTRVREFNWVSLTPRVAA----EKIMNHCQQKIAILFGQERCGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           +E+   +  ++ P NP + SLN++ AV ++ +E + N+ +  EKN+K++  P A   +  
Sbjct: 123 KELQRCHFQMTIPANPEYNSLNLAAAVQIVCYE-LRNAFL-QEKNIKKRTVPLADVKQHD 180

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F   L+  L++  + +P  + + ++D L  IF R EL  +E+ +L+GI S L+K
Sbjct: 181 YFYGQLQKRLKKIEFLKP-NRSQHVMDKLRRIFSRAELDSDEIKILQGIFSALEK 234


>gi|238027926|ref|YP_002912157.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877120|gb|ACR29453.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia glumae
           BGR1]
          Length = 284

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ + R+  
Sbjct: 45  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVAGVLADPEAVAMASGADDVLAATRIVP 104

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+A + +  A TAR+R      LAP+ AA     ++ SG+ +  +FG ER GL+NE
Sbjct: 105 TLADALAGVQWSVALTARSREYGPPRLAPRAAAETARAQLASGE-IAFVFGNERVGLSNE 163

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGEL 192
            +   +AI   P NP + SLN+SQA+ ++ +E +  +++S     +      T     E+
Sbjct: 164 HVERCSAIAHIPANPEYSSLNLSQAIQVLAYE-LRVALLSGSPGGRHDGAAGTLARADEI 222

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 223 EGMFAHLEAALVALDFLDP-RNPKKLMPRLRRMFSRAGLEREEVNILRGIA 272


>gi|304415209|ref|ZP_07395920.1| putative RNA methyltransferase [Candidatus Regiella insecticola
           LSR1]
 gi|304282943|gb|EFL91395.1| putative RNA methyltransferase [Candidatus Regiella insecticola
           LSR1]
          Length = 260

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 132/256 (51%), Gaps = 23/256 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    NIG  ARAM    LT+L LV+P +   S    + +A A  VID  ++  N
Sbjct: 7   IILVEPSHPGNIGSAARAMKTMGLTELYLVDPLEKIDSHTI-ALAAGASNVIDKAKIVDN 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135
           L +A+A+   I  T+AR+R +   +L P+E  +  ++E  F+   V ++FGRER GLTN 
Sbjct: 66  LDQAVAECSLIIGTSARSRTHAWPMLHPRECGVKSVSEAHFA--PVALVFGRERSGLTNH 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPAT----- 188
           E+   +  +  P NP + SLN++ AV ++ +E + N+ + + + V E   N P++     
Sbjct: 124 ELQKCHFHVEIPTNPEYSSLNLAMAVQVIAYE-IRNAWLDATRVVTEPPSNLPSSLPSCA 182

Query: 189 ----------KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                       +L  F   LE  L + G+ R      +++  L  +F R  L   E+ +
Sbjct: 183 VKQKTALYPPNEDLERFYQCLEQVLGDIGFIRQAH-PGQIMTKLRRLFTRARLETVELHI 241

Query: 239 LRGIVSTLDKFSRQSS 254
           LRGI+  +D+  +  +
Sbjct: 242 LRGILHLIDESKKHHA 257


>gi|145638711|ref|ZP_01794320.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittII]
 gi|145272306|gb|EDK12214.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittII]
 gi|309750201|gb|ADO80185.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2866]
          Length = 241

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 133/237 (56%), Gaps = 16/237 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
             EA+ D   +  T+AR R+   +++ P+E A    E++ + +  + I+FGRER GLTNE
Sbjct: 65  FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGKIAIVFGRERIGLTNE 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKGE 191
           E+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E++ P T  +
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKSYP-TVDQ 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++K
Sbjct: 180 LAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEK 232


>gi|260555311|ref|ZP_05827532.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260411853|gb|EEX05150.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 279

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 20/260 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  +++ V +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-MYPHPDIQALAAGAQDLLEQVEIVET 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FGRE  GLTNEE
Sbjct: 77  LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194
           +AL+N  ++ PVN  +  LN++QA+ ++ +E   + +   E        P T+G+ +   
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLTQGQSMQWD 196

Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                      F  +LE  L E  +  P E  + +   L  +F R +L R E  LLRGI 
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255

Query: 244 S-----TLDKFSRQSSRRNN 258
           S     T  K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKED 275


>gi|117920726|ref|YP_869918.1| RNA methyltransferase [Shewanella sp. ANA-3]
 gi|117613058|gb|ABK48512.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. ANA-3]
          Length = 241

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV      NIG  ARAM    L+ L L  PR     +    ++  +D +   V+V S 
Sbjct: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHLVKVDS- 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  GLTNEE
Sbjct: 66  LEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLTGP-VAIVFGRENHGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      ++ P NP + SLN++QAV ++ +E     +  +E    E+  P +  +L  F 
Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLS-ADLERFF 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK
Sbjct: 184 VHLESTLSSTGFIIK-NHPGQVMTKLRRLFSRARIESQEMNILRGILTSIDK 234


>gi|330807633|ref|YP_004352095.1| tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375741|gb|AEA67091.1| putative tRNA/rRNA methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 256

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 11/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM N  L++L LV PR  +P  +A + ++ A  ++ + +V + 
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPRL-FPHHEADARASGAGDILANAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+   + +  T+AR+R     +L P+E    + E    G  + ++FGRE  GLTN+E
Sbjct: 66  LEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAQGFEIALVFGREDSGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVWECME---NSIVSSEKNVKEQNTPA 187
           +   +  +  P +P F SLN+  AV +      M W   E   + I  +E       T A
Sbjct: 126 LQRCHFHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAEGKPSKIEKTEVTSPRSETLA 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  F ++LE +L +  +  P EK + ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 186 TMDELERFYEHLEQTLVDIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGILTETQ 244

Query: 248 KFSR 251
           K +R
Sbjct: 245 KAAR 248


>gi|254432233|ref|ZP_05045936.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
           7001]
 gi|197626686|gb|EDY39245.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
           7001]
          Length = 255

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 4/241 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV+P    N+G VAR   NF + QLRLV+PR     E+AR  + +   V+D   +  
Sbjct: 6   VVVLVEPAGALNVGSVARLCANFAVQQLRLVSPRCDPFGEEARRMAVHGASVLDQAALHP 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L  A+AD H + AT+ R       +  P+ +   L+      Q V ++FGRE  GL+N 
Sbjct: 66  DLASAVADCHRVVATSGRRDGEPLPLQGPETSLAWLSGGPCD-QTVALVFGREDRGLSNG 124

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGELL 193
           E+  +  +++ P    + SLN+S AV L +  W         + +  +E   P  +GEL 
Sbjct: 125 ELLQAGHLLTLPTAAAYTSLNLSHAVALALHAWHGQVQRTAHAAEPPEEVLEPCRRGELE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           + +   E  L E G+  P     +M   + ++  R  +   EV LLRG+V  L   SRQ 
Sbjct: 185 ALVADAEALLLEVGFLYPHTADARM-AKVRALLQRGGISSGEVALLRGMVRQLRWASRQG 243

Query: 254 S 254
           +
Sbjct: 244 A 244


>gi|237808766|ref|YP_002893206.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
           9187]
 gi|237501027|gb|ACQ93620.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
           9187]
          Length = 243

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 5/239 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     NIG  ARAM    L+QL LV+P    P EK+ + +A A+ ++ ++R+   
Sbjct: 8   IILVNTSHTGNIGSAARAMKTMGLSQLVLVDPVQP-PDEKSTALAAGANDILANLRIVPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAI+D   +   +AR+R     +L P++A   L +   + + V ++FGRER GLTNEE
Sbjct: 67  LAEAISDCSLVIGASARSRTLAWPMLDPRQAGQQLADGALN-KTVALVFGRERTGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGELLS 194
           +   +  ++ P NP + SLN++ AV  + +E   + +   E  V   ++N    +  +  
Sbjct: 126 LQQCHYHVNIPANPEYSSLNVAMAVQTLCYEIRMSWLAQQETVVSPADENEYPPQASMEL 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           F  +LE +L +  +         M+  L  +F R      E+ +LRGI++++ K SR S
Sbjct: 186 FYTHLEETLRQTQFLHSDHPGHVMM-RLRRMFTRLRPDNNELNILRGILTSVQKSSRNS 243


>gi|152997509|ref|YP_001342344.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150838433|gb|ABR72409.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
          Length = 240

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 136/245 (55%), Gaps = 13/245 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +QN  +   I+LV+     NIG  ARAM N  L  L LV P++ +PS++A S ++ A  +
Sbjct: 1   MQNKVR---IVLVNTSHPGNIGGAARAMKNMGLADLYLVAPKE-YPSDEAVSRASGATDI 56

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFG 126
           +D+  + + L+EA+AD   +  T+AR RN    ++ P++AA +V +E    G     +FG
Sbjct: 57  LDNAVIVNTLEEALADCQLVIGTSARERNIPWPLVDPRQAADLVFDE----GLVTAFVFG 112

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQN 184
           RE  GLTNEE+   N  +  P    F SLN+  AV ++ +E    +++  +  V   + +
Sbjct: 113 REDRGLTNEELQRCNYHVHIPSVETFSSLNLGAAVQVIAYELRMKTLLMKDAPVVASKWD 172

Query: 185 TPATKGELLSF-LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
            PA   E + + L++LE  L +  +  P E   +++     +F R  L ++EV +LRG++
Sbjct: 173 VPAANIEQIDYLLEHLEKVLVQTEFLDP-EMPMQVMTRFRRMFQRSRLDQQEVGMLRGML 231

Query: 244 STLDK 248
           ++++K
Sbjct: 232 TSMEK 236


>gi|254496594|ref|ZP_05109462.1| RNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254354218|gb|EET12885.1| RNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 251

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 3/241 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L  L LV+P+  +P  KAR  +A AD ++++  V   
Sbjct: 8   VVLVATSHPGNIGSTARAMKTMGLNSLYLVSPKS-FPDYKAREMAAGADDLLETAVVTET 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     I AT+AR R      L P  +A +++++  S Q + I+FGRE  GLTNEE
Sbjct: 67  LDEALVGCQLILATSARPRGLSLPGLIPSSSAELVSKQAESTQ-IAIVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  I  P NP + SLN++QAV ++ +E     +    +     +  AT  E+  F 
Sbjct: 126 LLKCHYHIHIPSNPEYSSLNLAQAVQIVAYELRMKLLAPKAEVALRSDEYATADEIEQFY 185

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
           ++L+    E  + R     ++++  +  +F R  L + EV +LRG++S + K    +S+R
Sbjct: 186 EHLKEVFIEIKFLREA-NPRRLMQRVRRLFNRVNLEKMEVSILRGMLSQVQKSLEWASKR 244

Query: 257 N 257
            
Sbjct: 245 G 245


>gi|303251299|ref|ZP_07337477.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252468|ref|ZP_07534364.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649841|gb|EFL80019.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860060|gb|EFM92077.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 242

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 132/231 (57%), Gaps = 14/231 (6%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           L  NIG  ARAM    L+ LRLV P +    E+A++ SA A  V+ + ++F + ++AIAD
Sbjct: 16  LPANIGSAARAMKTMGLSNLRLVAPLNPI-DEQAQALSAGARDVLANAQIFDSFEQAIAD 74

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              +  T+AR R+   S++ P++   +  ER   G+ V I+FGRER GLTNEE+   +  
Sbjct: 75  CQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKGK-VAIVFGRERVGLTNEELLKCHYH 133

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKGELLSFLD 197
           ++FP NP + SLN++ AV L  +E +  + +  +KN      V+E++ P T+  L  F +
Sbjct: 134 LNFPTNPDYGSLNLAMAVQLASYE-VRMAWLDLQKNPQIRPLVEEKDYPNTEA-LEHFFN 191

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + E   ++  + R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 192 HTERLYKQLSFIR----NDAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|322508137|gb|ADX03591.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           1656-2]
          Length = 271

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 20/260 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  +++ V +   
Sbjct: 10  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FGRE  GLTNEE
Sbjct: 69  LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 128

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE---------KNVKEQ 183
           +AL+N  ++ PVN  +  LN++QA+ ++ +E     +E   V+S+         ++++  
Sbjct: 129 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 188

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
               T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R E  LLRGI 
Sbjct: 189 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 247

Query: 244 S-----TLDKFSRQSSRRNN 258
           S     T  K+ + SS + +
Sbjct: 248 SRVQALTSGKWKKASSDKED 267


>gi|184157822|ref|YP_001846161.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|332874635|ref|ZP_08442526.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6014059]
 gi|183209416|gb|ACC56814.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|323517711|gb|ADX92092.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332737164|gb|EGJ68100.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6014059]
          Length = 279

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 20/260 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  +++ V +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FGRE  GLTNEE
Sbjct: 77  LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE---------KNVKEQ 183
           +AL+N  ++ PVN  +  LN++QA+ ++ +E     +E   V+S+         ++++  
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
               T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R E  LLRGI 
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255

Query: 244 S-----TLDKFSRQSSRRNN 258
           S     T  K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKED 275


>gi|218437496|ref|YP_002375825.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7424]
 gi|218170224|gb|ACK68957.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7424]
          Length = 253

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 5/231 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G VAR M N  L +L LVNPR    S++A+  + +   +++ +++ ++
Sbjct: 11  IILVEPAGALNVGSVARVMKNMGLKRLILVNPRCDPFSDEAKRMAVHGQDILEQLQLVNS 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+       ATT+R R     +  P++A   L   + SG    +IFG E  GL+NEE
Sbjct: 71  LPQALTGCQRAIATTSRMRTLPTVLETPRDALPWL---LDSGVKGALIFGPEDRGLSNEE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +  +   +  P NP +PSLN++QAV + V+E  + ++    K  K ++  A+  +L  + 
Sbjct: 128 LNYAQRFVCIPANPDYPSLNLAQAVAVCVYELYQATLTPVAKR-KSEDESASLEDLERYY 186

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
             LE  L + GY  P     +M +    ++ +  L REE+ +LRGI+  ++
Sbjct: 187 QDLETLLLKIGYLYPHTASARM-EKFRRMYYKANLNREELAMLRGILRQMN 236


>gi|169796249|ref|YP_001714042.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213157017|ref|YP_002319062.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii AB0057]
 gi|215483704|ref|YP_002325925.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB307-0294]
 gi|239504053|ref|ZP_04663363.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB900]
 gi|301347826|ref|ZP_07228567.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB056]
 gi|301511110|ref|ZP_07236347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB058]
 gi|301595111|ref|ZP_07240119.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB059]
 gi|332855453|ref|ZP_08435873.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013150]
 gi|332866041|ref|ZP_08436785.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013113]
 gi|169149176|emb|CAM87055.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|193077116|gb|ABO11892.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213056177|gb|ACJ41079.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii AB0057]
 gi|213987649|gb|ACJ57948.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB307-0294]
 gi|332727427|gb|EGJ58857.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013150]
 gi|332734861|gb|EGJ65952.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013113]
          Length = 279

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 20/260 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  +++ V +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FGRE  GLTNEE
Sbjct: 77  LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE---------KNVKEQ 183
           +AL+N  ++ PVN  +  LN++QA+ ++ +E     +E   V+S+         ++++  
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
               T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R E  LLRGI 
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255

Query: 244 S-----TLDKFSRQSSRRNN 258
           S     T  K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKED 275


>gi|270264747|ref|ZP_06193012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera 4Rx13]
 gi|270041430|gb|EFA14529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera 4Rx13]
          Length = 244

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLI-KPDSQAIALAAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +AIA    +  T+AR+R     +L P+E  +     +  G++  V ++FGRER GLTN
Sbjct: 66  LDDAIAGCSLVVGTSARSRTLPWPMLEPRECGV---RAVHEGEHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTP-ATKGEL 192
           +E+   +  ++ P NP + SLN++ AV ++ +E     +   +  V + + TP     +L
Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQVGVPQLEETPYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE +L+  G+ RP    + M   L  +F R     +E+ +LRG++++++K  + 
Sbjct: 183 ERFYQHLEQTLQHSGFIRPAHPGQVM-SRLRRLFTRARPEAQELNILRGMLTSIEKQDKH 241

Query: 253 SS 254
             
Sbjct: 242 QG 243


>gi|169633231|ref|YP_001706967.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|169152023|emb|CAP00898.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
          Length = 279

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 20/260 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  +++ V +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FGRE  GLTNEE
Sbjct: 77  LEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSE---------KNVKEQ 183
           +AL+N  ++ PVN  +  LN++QA+ ++ +E     +E   V+S+         ++++  
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWD 196

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
               T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R E  LLRGI 
Sbjct: 197 EPLVTQQQMEEFYPHLEKVLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255

Query: 244 S-----TLDKFSRQSSRRNN 258
           S     T  K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKED 275


>gi|299770509|ref|YP_003732535.1| rRNA methylase [Acinetobacter sp. DR1]
 gi|298700597|gb|ADI91162.1| rRNA methylase [Acinetobacter sp. DR1]
          Length = 279

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 15/247 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L +L LV P+  +P    ++ +A A  + + + +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHLEIVDT 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D H ++ T+AR+R     +L  + AA    +    GQ + I+FGRE  GLTNEE
Sbjct: 77  LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATTQGQQIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194
           +AL+N  ++ PVNP +  LN++QA+ ++ +E   +++   + +      P  +G+ +   
Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEQVDQNVDEMPLVQGQSMQWD 196

Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                      F  +LE  L E  +  P E  + +   L  +F R +L R E  LLRGI 
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255

Query: 244 STLDKFS 250
           S +   +
Sbjct: 256 SRVQALT 262


>gi|88858499|ref|ZP_01133141.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Pseudoalteromonas tunicata D2]
 gi|88820116|gb|EAR29929.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Pseudoalteromonas tunicata D2]
          Length = 249

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 132/243 (54%), Gaps = 6/243 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG VARAM    L++L LV+P +   S  A + +A A  V+ +  V  +
Sbjct: 8   VVLVNTSHTGNIGSVARAMKTMGLSKLYLVDPVNQIDSH-ASALAAGATDVLGNAVVVDD 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIAD   +  T+AR+R     ++ P+E   +L +    G  V ++FGRE  GL+NEE
Sbjct: 67  LAQAIADCSLVIGTSARSRTLSWPMVEPRECGQMLVDGAKKGP-VALVFGRENSGLSNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194
           + + +  +  P NP + SLN++ AV  + +E     +   EK V+   T  P+++ +L  
Sbjct: 126 LQMCHYHVCIPANPEYSSLNLAMAVQTLTYEVRMAFLQQQEKKVEVDETVYPSSQ-QLEL 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           F  +L+ +LE  G+    +    ++  L  +F R      E+ +LRGI++++DK   Q++
Sbjct: 185 FYQHLQNTLENTGFIIK-QHPGLVMTKLRRLFNRARPEDGELNILRGILTSVDKLDSQAT 243

Query: 255 RRN 257
           + N
Sbjct: 244 KNN 246


>gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 256

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  +  ENIGM ARA  N   + L LV+P +    +    ++A+A  +++SVRV   
Sbjct: 7   VVLVRTKYPENIGMAARACANMGCSDLVLVDPLNLDLDKALPLATAHARHILESVRVTHG 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+AD H ++ TTAR     KS++ P EA  +    +  G+ V ++FG E  GL NEE
Sbjct: 67  LAAALADAHVVFGTTARTGGWRKSLVPPVEAGRMAAAELVKGKRVALVFGSEDKGLENEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGELL 193
           I +   +++ P      SLN++QAVL++++EC   S     ++   V E++  AT  E  
Sbjct: 127 IQMCGQLVTIPTAREMSSLNLAQAVLVLLYECFRQSQPAGHAAHDQVAERH--ATHAEQE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           + +  ++ +L    + +P +     L  +   F + +L R E  +L GI 
Sbjct: 185 ALMANIQETLSAIDFLKP-QNPDYWLLPVRRFFAKLDLRRSEFNMLMGIC 233


>gi|257097728|pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From
           Haemophilus Influenzae Rd Kw20
 gi|257097729|pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From
           Haemophilus Influenzae Rd Kw20
          Length = 244

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 131/238 (55%), Gaps = 18/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARA     LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 10  IVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
             EA+ D   +  T+AR R+   +++ P+E A    E++  + G+ + I+FGRER GLTN
Sbjct: 68  FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGK-IAIVFGRERIGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T  
Sbjct: 123 EELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAFLVQNNKKNSLSLIEKNYPTTD- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F DY E   +  G+ +     +K    L  ++ R +L + E+ +L G +S ++K
Sbjct: 182 QLAYFFDYTERIYQSLGFIQNQGVXRK----LKRLYYRAKLEKNELNILNGXLSAVEK 235


>gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
           6192]
 gi|306531598|gb|ADN01132.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
           6192]
          Length = 236

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 112/204 (54%), Gaps = 14/204 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+  EN+GMVARAM N    +L LV P     S  AR  + +A+ +++  RV   
Sbjct: 4   VILVEPEGAENVGMVARAMANMGHERLVLVRPACDHLSPPARRYAVHAESILEGARVCET 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+  +    A T R+       L   E    L E  F+G++V ++FGRER GLT+EE
Sbjct: 64  LAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAE--FTGRDVALVFGRERTGLTSEE 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   + I++ P +   PSLN++QAV+++++E M  S +S          P  + +L  +L
Sbjct: 122 VQACDLILTIPSSGACPSLNLAQAVMVVLYELMRASFLSL--------APRREEDLRPYL 173

Query: 197 DYLEIS----LEERGYFRPVEKKK 216
           D   +     LE+ GY+R + ++K
Sbjct: 174 DEAVVRAREVLEKLGYYRNIPEEK 197


>gi|300311053|ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073838|gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 275

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 132/254 (51%), Gaps = 18/254 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+     NIG  ARA+     ++L LVNPR  D    ++A + ++ A  V+ + R+  
Sbjct: 17  VLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVLQNARIVG 76

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +++EA+   +F  A +AR R     V++P+E A  L+    +G N  ++FG ER+GL NE
Sbjct: 77  SVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRD--TGLNAALLFGNERFGLPNE 134

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----------MENSI-VSSEKNVKEQ 183
            +   NA+++ P NP + SLN+SQAV ++ +EC           M+ S    S   V   
Sbjct: 135 VVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSPGEVGFH 194

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              A+  E+     +LE +L    +  P +  KK++  L  +F R +L  EEV +LRGI 
Sbjct: 195 GQSASVAEIEGMFAHLEQALVAIDFLNP-DNPKKLMPRLKRMFSRAQLETEEVNILRGIA 253

Query: 244 -STLDKFSRQSSRR 256
              L+    ++ RR
Sbjct: 254 RQILEPKQAKAGRR 267


>gi|237745860|ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229377211|gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 259

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 12/244 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           ILV      N+G  ARA+      +L LV PR  +    E+A + ++ A  V++   +  
Sbjct: 17  ILVGTSHPGNVGAAARAIKTMGFDRLILVRPRFENVLTHEEAIAFASGAQDVLEKAEIVD 76

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + +A+ +  F  A TAR R     VL P++ A  VL+++    +   ++FG ER+GL N
Sbjct: 77  TIDQALENCQFAAAITARLREFSPPVLTPRQFAETVLSDK---KKPCALVFGSERYGLPN 133

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----MENSIVSSEKNVKEQNTPATK 189
           E +    A+I+ P NP + SLN++QA+ ++ +EC     +EN   +   ++     PA+ 
Sbjct: 134 EVVEQCQALINIPANPAYSSLNLAQAIQVLAYECRMALLLENGEPARVDHIGFHGDPASV 193

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++     +LE  L   G+  P +  KK++  L  +F R  L  EEV +LRGI   ++K 
Sbjct: 194 EQINGMFAHLESVLTAIGFLNP-DNPKKLMPRLRRLFSRTGLETEEVNILRGIARQMEKQ 252

Query: 250 SRQS 253
           +R S
Sbjct: 253 ARYS 256


>gi|325526741|gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 290

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 9/233 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA++ +H+  A TAR R      LAP+ AA     ++ +G ++ ++FG ER GL NE
Sbjct: 106 TLGEALSGVHWSIALTARAREYGPPRLAPRAAAGQACAQVGTG-DIALVFGNERTGLANE 164

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKG 190
            +   +A+   P NP + SLN++QAV ++ +E       + +  + +    E  T A   
Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQQASDAQQPPAGEAGTLAQSD 224

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           E+     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 225 EIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 276


>gi|113970074|ref|YP_733867.1| RNA methyltransferase [Shewanella sp. MR-4]
 gi|113884758|gb|ABI38810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-4]
          Length = 241

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV      NIG  ARAM    L+ L L  PR     +    ++  +D +   V+V S 
Sbjct: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHLVKVDS- 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   + AT+AR+R     +L P+EA   L     SG  V I+FGRE  GLTNEE
Sbjct: 66  LEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSGP-VAIVFGRENHGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      ++ P NP + SLN++QAV ++ +E     +  +     E+  P +  +L  F 
Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTAAPQVEEEYPLS-ADLERFF 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK
Sbjct: 184 VHLESTLSSTGFIIK-NHPGQVMTKLRRLFSRARIESQEMNILRGILTSIDK 234


>gi|167586794|ref|ZP_02379182.1| RNA methyltransferase TrmH, group 1 [Burkholderia ubonensis Bu]
          Length = 269

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 28  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 87

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++ +H+  A TAR R      LAP+ AA     ++ +G ++ ++FG ER GL NE
Sbjct: 88  TLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACAQVGTG-DIALVFGNERTGLANE 146

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E++  S  +   E  T A   E
Sbjct: 147 HVDQCSALAHIPANPAYSSLNLAQAVQVLAYELRIAFLEHASASLPR--PEAGTLAQSDE 204

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI   +   SR
Sbjct: 205 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHILLKSR 263

Query: 252 QSSR 255
              R
Sbjct: 264 TPDR 267


>gi|254426790|ref|ZP_05040497.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
 gi|196192959|gb|EDX87918.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
          Length = 260

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 135/250 (54%), Gaps = 21/250 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+     NIG  ARAM    L+ LRLV P+  +PS +A + ++ A  V+++ +V ++
Sbjct: 7   IVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQ-AYPSVEATARASGAGDVLEAAQVCNS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QN--VGIIFGRERWGLT 133
           + EA+     +  T+AR R      L P++ A  L+  + +  QN  + ++FGRE  GLT
Sbjct: 66  VDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQNTRIAVLFGREDRGLT 125

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------- 185
           N+E+   N  +S P NP +  LN++ AV L+ +E +  +++  +  ++E  +        
Sbjct: 126 NDELRRCNLHVSVPTNPEYGVLNVASAVQLISYE-LRLALLGDDFELQESRSRREVMPLP 184

Query: 186 -------PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                  PAT   +  FLD+LE  + + G+  P E+  +++  +  +F+R    + E+ +
Sbjct: 185 EMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNP-EQPGQVMTRMRRLFMRARPDKMEMSI 243

Query: 239 LRGIVSTLDK 248
           LRG++  L+K
Sbjct: 244 LRGVLVALEK 253


>gi|152981160|ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281237|gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
          Length = 253

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 7/233 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           ILV+     NIG  ARA+ N   T+L LVNPR  D    E+A + ++ A  ++ + R+  
Sbjct: 17  ILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVAFASGAQDILQAARIVG 76

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +++EA+ D +F  A TAR R     V++P+  A  L E   +G    ++FG ER+GL NE
Sbjct: 77  SIEEALIDCNFAAAVTARLREFSPPVISPRALATRLVEE--TGLRAAVVFGNERFGLPNE 134

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELL 193
            +   N +I+   NP + SLN++QAV ++ +E    ++    +  ++  Q   A+  ++ 
Sbjct: 135 IVEKCNVLINISANPDYSSLNLAQAVQVLAYEARMAAVGETRAATDIGFQGEAASMAQID 194

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               +LE +L    +       KK++  L  +F R +L  EEV +LRGI   +
Sbjct: 195 GMYAHLEQALVAIDFL-DANNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQI 246


>gi|262278807|ref|ZP_06056592.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262259158|gb|EEY77891.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 279

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 17/248 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L +L LV P+  +P    ++ +A A  + + + +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHLEIVDT 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D H ++ T+AR+R     +L  + AA    +    GQ + I+FGRE  GLTNEE
Sbjct: 77  LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQ---------- 183
           +AL+N  ++ PVNP +  LN++QA+ ++ +E +  S +  EK   NV E           
Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYE-LRMSALEQEKVDQNVDEMPLVQGQSMQW 195

Query: 184 NTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           + P  T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R E  LLRGI
Sbjct: 196 DEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGI 254

Query: 243 VSTLDKFS 250
            S +   +
Sbjct: 255 FSRVQALT 262


>gi|308050472|ref|YP_003914038.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
 gi|307632662|gb|ADN76964.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
          Length = 244

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 4/235 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL L  P+   P  ++ + +A A  ++ ++ V  +
Sbjct: 7   IVLVGTTHPGNIGSAARAMKTMGLSQLFLAEPKVA-PDGQSIALAAGASDLLKNLVVTDD 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  AIAD   +  T+AR+R     +L  +EA + L     +G  V ++FGRE  GL+NEE
Sbjct: 66  LASAIADCSLVIGTSARSRTLSWPMLDAREAGVKLASEANTGP-VALVFGRENSGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELLSF 195
           + + +  +  P NP + SLN++QAV L+ +E     +  +E+   E      T+G++   
Sbjct: 125 LQMCHYHVCIPANPEYSSLNLAQAVQLLSYETRMAHLAQTEQPSPEAEVEYPTQGQMEGL 184

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
             +LE +L   G+       + M + L  +F R    + E+ +LRG+++++DK +
Sbjct: 185 YQHLEQTLSHTGFIIKAHPGQVM-NKLRRLFNRARPEQTELAILRGVLTSVDKTT 238


>gi|260550634|ref|ZP_05824843.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260406345|gb|EEW99828.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 279

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 133/260 (51%), Gaps = 20/260 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  +++ V +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVET 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D H ++ T+AR+R     +L  + A+    +    GQ + I+FGRE  GLTNEE
Sbjct: 77  LEDAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAASQGQQIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194
           +AL+N  ++ PVN  +  LN++QA+ ++ +E   + +   E    +   P  +G+ +   
Sbjct: 137 LALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKESVSDDGQMPLAQGQSMQWD 196

Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                      F  +LE  L E  +  P E  + +   L  +F R +L R E  LLRGI 
Sbjct: 197 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255

Query: 244 S-----TLDKFSRQSSRRNN 258
           S     T  K+ + SS + +
Sbjct: 256 SRVQALTSGKWKKASSDKED 275


>gi|87119545|ref|ZP_01075442.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
 gi|86165021|gb|EAQ66289.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
          Length = 241

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 131/240 (54%), Gaps = 16/240 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM N  L +L LV P+  +PS++A S ++ A  ++++  V   
Sbjct: 6   IVLVNTSHPGNIGAAARAMKNMGLARLYLVAPK-VFPSDEADSRASGATDILENAVVVDT 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   +  T+AR R+    ++ P++AA +++E          +FGRE  GLTNEE
Sbjct: 65  LEEAIADCQLVVGTSARERHIPWPLVDPRQAAEMVHEEQLES---AFVFGREDRGLTNEE 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE-------CMENSIVSSEKNVKEQNTPATK 189
           +   +  +  P    F SLN+  AV ++ +E         +  IV+S+ +V      AT 
Sbjct: 122 LQRCHYHVHIPSVESFSSLNLGAAVQVLAYELRMRHLALQDAPIVASKWDVP----AATA 177

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L   L +LE  L +  +  P +  ++++     +F R +L ++EV +LRG+++++DK 
Sbjct: 178 DQLDHMLTHLESVLSKTEFLDP-KAPRQVMTRFRRLFQRAQLDQQEVGMLRGMLTSVDKL 236


>gi|145299545|ref|YP_001142386.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852317|gb|ABO90638.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 240

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT+L LV+P+   P + A + +A A  V+ + RV S 
Sbjct: 7   IVLVNISHTGNMGSAARAMKTMGLTRLVLVDPQT-LPDDSAHALAAGASDVLANARVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAIAD   +  T+AR+R     +L P+EA     + +  G    V ++FGRER GLTN
Sbjct: 66  LDEAIADCGLVIGTSARSRTLSWPMLDPREAG---EKAVGEGMKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+   +  ++ P NP + SLN++ AV  + +E     +      V+ +    +  +L  
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQTICYEVRMCWLQDQAPEVESEADYPSAHQLEG 182

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248
           F  +LE +L + G+    +   +++  L  +F   RPE +  E+ +LRGI++++ K
Sbjct: 183 FYQHLEQTLLKTGFIAD-DHPGQVMSKLRRLFNRARPEAI--ELNILRGILTSIQK 235


>gi|269137921|ref|YP_003294621.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983581|gb|ACY83410.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557972|gb|ADM40636.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           FL6-60]
          Length = 235

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 3/152 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75
           I+LV P   EN+G  ARAM     T LR+V+ + DG P+  AR  +  A  ++D  R F 
Sbjct: 5   IVLVAPARAENVGAAARAMKTMGFTSLRIVDSKADGEPA--ARWVAHGAGDILDGARHFD 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD+ F  A+TAR+R  F     P+E   VL E+     +  ++FGRE  GLTN+
Sbjct: 63  TLAQALADVDFSVASTARSRARFHYYCTPQELCAVLQEKQRWMASCALVFGREDSGLTND 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL + +   P+   +PSLN+ QAV++  ++
Sbjct: 123 ELALVDLLTGVPMAADYPSLNLGQAVMVFCYQ 154


>gi|319787464|ref|YP_004146939.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465976|gb|ADV27708.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 267

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 10/256 (3%)

Query: 2   TPYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           +P  PQ   +  GP    I+LV  Q   NIG  ARAM    L++L LV+P      + A 
Sbjct: 4   SPIQPQ-HAAGPGPGDIRIVLVGTQHPGNIGAAARAMKTMGLSRLVLVSPEKPL-DDTAY 61

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             SA A+ V+DS  V++ L EA+AD   +   TAR+R      L P  AA    +    G
Sbjct: 62  RRSAGAEDVLDSAPVYATLAEAVADCRMVLGCTARSRRVQLEQLEPDAAAQRALQATAEG 121

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVS 175
             V ++FGRER GLTNEE+ L +A +  P +P F SLN++ AV ++ +E    +  +  +
Sbjct: 122 -PVALVFGRERTGLTNEELQLCHASVHIPSDPAFSSLNLAAAVQVLAYELRLAVLAADPA 180

Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
             +       PA+  ++  F   L  +L++  + +       M   L  +F+R  L   E
Sbjct: 181 PAEPPPPDAQPASHEQVEGFFAQLADTLDDIDFHKGRSPDSAM-RKLRRLFLRTGLTVHE 239

Query: 236 VFLLRGIVSTLDKFSR 251
           V LLRG+++   + +R
Sbjct: 240 VRLLRGVLADAQRMAR 255


>gi|157961311|ref|YP_001501345.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157846311|gb|ABV86810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella pealeana
           ATCC 700345]
          Length = 254

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 136/251 (54%), Gaps = 14/251 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  P+   P   + + +A A  ++      S+
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-EPDGHSIALAAGASDILKHAITVSS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  GLTNEE
Sbjct: 66  VEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVGSALNGP-VAIVFGRENNGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-------MENS---IVSSEKNVKEQNTP 186
           +   +  ++ P NP + SLN++QAV ++ +E        ++NS   ++ +E    +++ P
Sbjct: 125 LQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQNSAEAVIETESEEAQEDFP 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           ++K E  +F ++LE +L    +        +++  L  +F R  + R+E+ +LRGI++++
Sbjct: 185 SSK-ERENFFEHLENTLFSTNFIVK-NHPGQIMTKLRRLFSRTRIERQEMNILRGILTSI 242

Query: 247 DKFSRQSSRRN 257
           DK   +S  ++
Sbjct: 243 DKVVAKSETKD 253


>gi|218296368|ref|ZP_03497111.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
           Y51MC23]
 gi|218243162|gb|EED09693.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
           Y51MC23]
          Length = 244

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 131/250 (52%), Gaps = 24/250 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVIDSVRV 73
           ++LV+PQ   N+G VARAM NF L +L LVNP  R G P + +A   + +A+ ++D    
Sbjct: 10  VVLVEPQEPMNVGAVARAMRNFGLARLYLVNPAPRVGPPWAREAYWLAVHAEEILDRAVA 69

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132
             +L EA+AD+  + ATT R R  + + + P   A  +  R+ S +  V ++FGRE +GL
Sbjct: 70  VDSLMEALADVELVVATTGRPRKLYPAPVVP---AWEVPARVLSVEGEVALVFGRETFGL 126

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----AT 188
           TNEE+AL++ I + P  P  PSLN++QAV++  +E          K V E   P    A 
Sbjct: 127 TNEELALAHVIGTIPTAPEQPSLNLAQAVVVFAYELF--------KAVGEGRFPREELAQ 178

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L +F + L   + E G F    +    +  L  IF +  L   EV +LRG++     
Sbjct: 179 VAALEAFFEDLGRYVLEIG-FTDQNRFPHAMRRLRRIFHKARLTPGEVQMLRGLLHQ--- 234

Query: 249 FSRQSSRRNN 258
            SR   R+ +
Sbjct: 235 -SRYQMRKKD 243


>gi|325121908|gb|ADY81431.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 271

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 15/247 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L +L LV P+  +P    ++ +A A  + + + +   
Sbjct: 10  IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHLEIVDT 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D H ++ T+AR+R     +L  + AA    +    GQ + I+FGRE  GLTNEE
Sbjct: 69  LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATCQGQQIAIVFGREDRGLTNEE 128

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194
           +AL+N  ++ PVNP +  LN++QA+ ++ +E   +++   + + +    P  +G+ +   
Sbjct: 129 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEKVDQEVDEMPLVQGQSMQWD 188

Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                      F  +LE  L E  +  P +  + +   L  +F R +L R E  LLRGI 
Sbjct: 189 EPLVTQQQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 247

Query: 244 STLDKFS 250
           S +   +
Sbjct: 248 SRVQALT 254


>gi|226939275|ref|YP_002794346.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226714199|gb|ACO73337.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 268

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 126/232 (54%), Gaps = 3/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P L  NIG  ARAM    LT+L LVNPR  +P  +A + ++ A  V+    V  +
Sbjct: 25  VVLARPSLPANIGSAARAMKTMGLTRLYLVNPRR-FPDPEADTLASGAVDVLQQAVVTGS 83

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+  +    A T+R R     + AP+ A   L +    GQ V ++FG E +GL+ EE
Sbjct: 84  LGEALDGVALACALTSRKREITTPLAAPRIACAELLDAARQGQQVALVFGNETFGLSIEE 143

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
               N +++   NP + SLN++QAV +M +E   + +     +++ Q   A++ E+    
Sbjct: 144 AGQCNRLVTIAGNPDYFSLNLAQAVQVMSYELF-SQLDFPLDHLRFQTERASRDEVEGLY 202

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L+ +L   G++      ++++  L ++F R +L R+E+ +LRGI+  +++
Sbjct: 203 GHLDHTLSGIGFYE-RRNSERLMRRLRTLFDRADLERQEIDILRGILKQVER 253


>gi|183599756|ref|ZP_02961249.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
 gi|188022017|gb|EDU60057.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
          Length = 243

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 13/243 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    L+ L LVNP+   P   A + SA A  VI +  + ++
Sbjct: 7   IILVETSHTGNMGSTARAMKTMGLSNLYLVNPQV-QPDSHAIALSAGASDVIGNATIVNS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+     +  T+AR+R     ++AP+E      + +   +   V IIFGRER GLTN
Sbjct: 66  LDEALEGCKLVIGTSARSRTLSWPMVAPRECG---EKSVMQAKTAPVAIIFGRERIGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-----KEQNTPATK 189
           EE+      +  P NP + SLN++ AV L+ +E     +   EKN       E   P  +
Sbjct: 123 EELQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLALEEKNAVNSEEDEVEYPPVE 182

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++  F  +LE  L E G+ R       +++ L  ++ R  +  +E+ +LRGI+++++K+
Sbjct: 183 -DIERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLYTRAHIETQELHILRGILTSMEKW 240

Query: 250 SRQ 252
           +++
Sbjct: 241 AKK 243


>gi|157371864|ref|YP_001479853.1| RNA methyltransferase [Serratia proteamaculans 568]
 gi|157323628|gb|ABV42725.1| RNA methyltransferase, TrmH family, group 1 [Serratia
           proteamaculans 568]
          Length = 244

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 126/242 (52%), Gaps = 9/242 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLI-KPDSQAIALAAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +AIA    +  T+AR+R     +L P+E  I     +  G++  V ++FGRER GLTN
Sbjct: 66  LDDAIAGCSLVVGTSARSRTLPWPMLEPRECGI---RAVHEGEHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTP-ATKGEL 192
           +E+   +  ++ P NP + SLN++ AV ++ +E     +   +    + + TP     +L
Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQAGAPQLEETPYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE +L+  G+ RP     +++  L  +F R     +E+ +LRG++++++K  + 
Sbjct: 183 ERFYQHLEQTLQHSGFIRP-SHPGQVMSRLRRLFTRARPEAQELNILRGMLTSIEKQDKH 241

Query: 253 SS 254
             
Sbjct: 242 QG 243


>gi|255319194|ref|ZP_05360411.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Acinetobacter
           radioresistens SK82]
 gi|262379697|ref|ZP_06072853.1| rRNA methylase [Acinetobacter radioresistens SH164]
 gi|255303587|gb|EET82787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Acinetobacter
           radioresistens SK82]
 gi|262299154|gb|EEY87067.1| rRNA methylase [Acinetobacter radioresistens SH164]
          Length = 280

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 27/262 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L +L LV PR  +P +   + +A A  +I+ +++   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLCRLILVAPR-TYPHQDIDALAAGAQDLIEQIQIVET 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
           L+EAI D H ++ T+AR+R     +L  + AA    + + S Q  + I+FGRE  GLTNE
Sbjct: 77  LEEAIQDCHLVFGTSARSRTIPWPLLDARPAAQTSMQAVVSKQQEIAIVFGREDRGLTNE 136

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL+N  ++ PVN  +  LN++QA+ ++ +E    ++   +   +E N     G+  S 
Sbjct: 137 ELALANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLELVDTPPQETNQMPVTGK--SM 194

Query: 196 LDYLE--ISLEERGYFRPVEKKKKMLDDLYSIFIRP-----------------ELMREEV 236
           +D+ E  ++ E+   F P    +KML+++   F+ P                 +L R E 
Sbjct: 195 MDWDEPLVTHEQMEQFYP--HLEKMLEEIE--FLDPNNKRLLPLRLRRLFGRIQLDRMEY 250

Query: 237 FLLRGIVSTLDKFSRQSSRRNN 258
            LLRGI S +   +  + +++N
Sbjct: 251 HLLRGIFSRVQALNNGTWKKSN 272


>gi|153208365|ref|ZP_01946703.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161831388|ref|YP_001597003.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|165919350|ref|ZP_02219436.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           334]
 gi|212212468|ref|YP_002303404.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
 gi|212218566|ref|YP_002305353.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
 gi|120576022|gb|EAX32646.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161763255|gb|ABX78897.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           331]
 gi|165916949|gb|EDR35553.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           334]
 gi|212010878|gb|ACJ18259.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
 gi|212012828|gb|ACJ20208.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    NIG  ARAM     ++L LV P + +P E+A + +A AD V+ S RV  +
Sbjct: 7   IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASARVVDD 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+   + ++ T+AR+R     +   +E A    + +    N+ I+FGRER GLTNEE
Sbjct: 66  LTAALEGCNLVFGTSARSRTLPWPLKTARECA---EQSVQHQGNIAIVFGRERSGLTNEE 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192
           +A     ++ P    F SLN++QAV ++ +E     + + +   + QNTP    AT  ++
Sbjct: 123 LAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDP--RHQNTPIQQLATADQM 180

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L +  +  P ++ K ++  L  +F R ++   E+ +LRGI++++ +
Sbjct: 181 EGFYVHLEKTLVDIKFIDP-KQPKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235


>gi|127513248|ref|YP_001094445.1| RNA methyltransferase [Shewanella loihica PV-4]
 gi|126638543|gb|ABO24186.1| RNA methyltransferase, TrmH family, group 1 [Shewanella loihica
           PV-4]
          Length = 252

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  P+   P  ++ + +A A  ++        
Sbjct: 7   VVLVGTTHPGNIGSTARAMKTMGLSTLYLAEPKVA-PDGQSVALAAGASDILKHAVTVDC 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AIAD   + AT+AR+R     +L P++A   L     +G  V I+FGRE  GL+N+E
Sbjct: 66  LEDAIADCSLVIATSARSRTLDWPMLDPRQAGEKLAGAAVNGP-VAIVFGRESNGLSNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   N  ++ P NP + SLN++QAV ++ +E     +    + V+EQ  P  K E  +F 
Sbjct: 125 LQKCNYHVTIPANPEYTSLNLAQAVQIICYEARVAHLAMDPETVEEQAYPLAK-EQENFF 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L   G+    +   +++  L  +F R  +  +E+ +LRGI++++DK
Sbjct: 184 VHLEKTLLSTGFIIK-QHPGQVMTKLRRLFSRARIESQEMNILRGILTSVDK 234


>gi|78222581|ref|YP_384328.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
           GS-15]
 gi|78193836|gb|ABB31603.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
           GS-15]
          Length = 248

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 13/235 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVF 74
           +ILV+PQ   N+GMV RAM N  L +LR+V    G P +  +A   + +A  +++  RVF
Sbjct: 11  VILVEPQSPGNVGMVCRAMKNMGLAELRIVK---GCPLDHPEAYKFAVSAKDLLEGARVF 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGL 132
            +L+EA+AD     ATT R+    + + +P E A  IV N    +G    ++FGRE  GL
Sbjct: 68  PSLEEALADTELSVATTRRHGKYRQEIYSPGEIAGKIVTN---LAGNRAALVFGREDSGL 124

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           T +E++L     + P +  + SLN++QAVL+  +E      +       E  T A     
Sbjct: 125 TTDELSLCRWHATIPTSAEYGSLNLAQAVLIFCYELFAG--LGEGTVAGEARTLAGSAAQ 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            +    +E +L   G+  P +    ++  +  IF R EL   EV +LRG+++ +D
Sbjct: 183 EALFGQMERTLLRIGFLNP-QNPDHIMRTVRRIFSRAELDDREVAILRGMMTQID 236


>gi|188533164|ref|YP_001906961.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188028206|emb|CAO96064.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 241

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAKIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAI+    +  T+AR+R+    +L P+E  I   + +  GQ+  V ++FGRER GLTN
Sbjct: 66  LDEAISGCSLVVGTSARSRSLPWPMLDPRECGI---KSVEEGQHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E       S+ + +    +   P    +
Sbjct: 123 EELQKCHYHVAIAANPDYSSLNLAMAVQIIAYEVRMAFLQSVEAPQAQCDDSPYPLVD-D 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  ++E  + + G+ R     + M   +  +F R    R+E+ +LRG++S+L+K
Sbjct: 182 LERFYQHMEKMMTDSGFIRAASPGQVM-SKMRRLFTRARPERDELNILRGMLSSLEK 237


>gi|152971395|ref|YP_001336504.1| tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895989|ref|YP_002920725.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330007729|ref|ZP_08306055.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
 gi|166234837|sp|A6TCF3|TRMJ_KLEP7 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|150956244|gb|ABR78274.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548307|dbj|BAH64658.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328535342|gb|EGF61825.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
          Length = 244

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 21/243 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +  GQ+  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEGQHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + +     +EQ  PA + E   
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAA-----QEQAQPAVEHEEAP 177

Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F D+LE +L   G+ RP     ++++ L  +F R     +E+ +LRG++++
Sbjct: 178 YPLVDDLERFYDHLEQTLLATGFIRP-NHPGQVMNKLRRLFTRARPESQELNILRGMLAS 236

Query: 246 LDK 248
           +++
Sbjct: 237 IEQ 239


>gi|262040271|ref|ZP_06013522.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042380|gb|EEW43400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 244

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 21/243 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +  GQ+  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEGQHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + +     +EQ  PA + E   
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAA-----QEQAQPAVEHEEAP 177

Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F D+LE +L   G+ RP     ++++ L  +F R     +E+ +LRG++++
Sbjct: 178 YPLVDDLERFYDHLEQTLLATGFIRP-NHPGQVMNKLRRLFTRARPESQELNILRGMLAS 236

Query: 246 LDK 248
           +++
Sbjct: 237 IEQ 239


>gi|78484960|ref|YP_390885.1| RNA methyltransferase TrmH, group 1 [Thiomicrospira crunogena
           XCL-2]
 gi|78363246|gb|ABB41211.1| RNA methyltransferase, TrmH family, group 1 [Thiomicrospira
           crunogena XCL-2]
          Length = 268

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 137/256 (53%), Gaps = 11/256 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+     NIG VARAM N  L+QL LVNP+D +PS+ A + ++ A  V++  +V   
Sbjct: 16  IVMVETSHPGNIGAVARAMKNMGLSQLVLVNPKD-FPSQVASARASGAADVLNDAKVVET 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-----NVGIIFGRERWG 131
           L++A+AD   +   +AR R      L  ++ A +  E +  GQ      V I+FGRE  G
Sbjct: 75  LEQAVADCKLVVGASARLRKVSWPQLDVRQTAELAMETV--GQEDEDNQVAILFGREDSG 132

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKG 190
           L+N E+   + +   P NP + SLNI+ AV + V+E  M   I S  +    ++  A+  
Sbjct: 133 LSNAELDKCHYLAHIPTNPTYSSLNIAAAVQVFVYELLMATDIKSVHEAEGYRHKLASSD 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++  F D+L  +L++  +  P  K  + +  +  +F R +L  +E+ +LRG+++   + +
Sbjct: 193 QMEGFYDHLYQALQDIEFLDPT-KNARFMRRMRRLFNRSQLDVKEIDILRGVLTAAQRQT 251

Query: 251 RQ-SSRRNNVLLQKTE 265
           +Q  + R    L K E
Sbjct: 252 KQLDTYRQQASLSKEE 267


>gi|95929632|ref|ZP_01312374.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
           684]
 gi|95134329|gb|EAT15986.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
           684]
          Length = 261

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 12/246 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+LV+PQ   NIG V RAM NF  + LRLVNP+     ++AR  +  A  V++S  ++S
Sbjct: 15  AIVLVEPQGPLNIGSVCRAMGNFGFSDLRLVNPQTDHLRQEARQMAVKAGYVLESATIYS 74

Query: 76  NLKEAIADLHFIYATT-----ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +L+EA+    + + TT      R+R++F   L P  AA ++        +  ++FGRE  
Sbjct: 75  SLEEALHGCQYAFGTTRRFGRYRDRDDF---LYPDAAAQMI-AGFDHDTHTALVFGREDC 130

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL NEE+ L    ++ P     PS+N++Q+V L ++E  +  + +  + +K       + 
Sbjct: 131 GLLNEELDLCQRFLTIPTCDAMPSMNLAQSVSLCLYEVSKQGLEARGELLKPNLAEIDQT 190

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E  S L +++ +L    Y  P +    +L     +F +  L   +V +LRG+ S +D+  
Sbjct: 191 E--SMLQHMKETLTRIDYLDP-QNPDHILRSFRRLFGKNGLTDRDVRILRGLWSRIDRVQ 247

Query: 251 RQSSRR 256
            +  +R
Sbjct: 248 LELEKR 253


>gi|300724149|ref|YP_003713466.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630683|emb|CBJ91348.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           nematophila ATCC 19061]
          Length = 244

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 16/245 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    L+ L LVNP    P   A + SA A  VI +  + + 
Sbjct: 7   IILVETSHTGNMGSAARAMKTMGLSNLYLVNPLV-QPDSNAIALSAGASDVIGNATIVNT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L EA+A    +  T+AR+R     ++ P+E      ER     N   V I+FGRER GLT
Sbjct: 66  LDEALAGCELVIGTSARSRTLPWPMVEPRECG----ERCVKASNHSPVAIVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK------EQNTPA 187
           NEE+   +  +  P NP + SLN++ AV L+ +E     +   EK+ K      E   P 
Sbjct: 122 NEELQKCHYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAFQEKSEKTVSPEHETEYPP 181

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            + ++  F  + E  L E G+ R V    ++++ L  ++ R     +E+ +LRGI+++++
Sbjct: 182 IE-DMERFYQHFEQVLSESGFIRKVH-PGQIMNRLRRLYTRARPETQELNILRGILTSME 239

Query: 248 KFSRQ 252
           K++++
Sbjct: 240 KWAKK 244


>gi|254416767|ref|ZP_05030517.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176507|gb|EDX71521.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 262

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 20/241 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G VAR M N  L QL LVNP     + +AR  + +   V++S +  + 
Sbjct: 8   IILVEPAGALNVGSVARVMKNMGLNQLWLVNPHCNPRASEARQMAVHGVEVLESAQQVAT 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI--VLNERIFSGQNVGIIFGRERWGLTN 134
           L EA+       ATTAR R +  + L P   A+  +L E I S     +IFG E  GL+N
Sbjct: 68  LPEALEGCQRAIATTARTR-HLPTTLEPPRLALPWLLAENITS----ALIFGPEDRGLSN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------------KNVKE 182
           +E+  +   +  P NP +PSLN++QAV +  +E  + + +SS+             +   
Sbjct: 123 DELNYAQRFVCIPANPEYPSLNLAQAVAVCCYELFQLTSLSSQTRHSTSLQAPQTHHGTS 182

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            +T A+   + ++  +LE  L + GY  P     +M +    ++ R  L  E+V +LRGI
Sbjct: 183 LHTTASLDAIEAYFQHLEAVLLKIGYLHPHTATSRM-EKFRRLYYRAMLTPEDVAMLRGI 241

Query: 243 V 243
           +
Sbjct: 242 L 242


>gi|46199124|ref|YP_004791.1| putative RNA methyltransferase [Thermus thermophilus HB27]
 gi|55981151|ref|YP_144448.1| hypothetical protein TTHA1182 [Thermus thermophilus HB8]
 gi|46196748|gb|AAS81164.1| putative RNA methyltransferase [Thermus thermophilus HB27]
 gi|55772564|dbj|BAD71005.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 244

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/247 (34%), Positives = 134/247 (54%), Gaps = 16/247 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVIDSVRV 73
           I+LV+PQ   N+G VARAM NF L++L +VNP  R G P +++A   + +A+ V++  +V
Sbjct: 6   IVLVEPQEPMNLGAVARAMRNFGLSRLYVVNPPPRVGPPWAKEAYWLAVHAEEVLEKAQV 65

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWG 131
             +L EA+     + ATT R R  + + +AP   A  + +R+  F G+ V ++FGRE +G
Sbjct: 66  AGSLLEALRGAQLVVATTGRPREVYPAPVAP---AWEVADRVAAFPGE-VALVFGRETFG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+ L++ I   P  P  PSLN++QAV++  +E  +         ++E   PA    
Sbjct: 122 LTNEELELAHLIGYIPTAPEQPSLNLAQAVVVFAYELFKRQ--GKGVGLREGGEPAPVEA 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L +F   L   + E G F    +    +  L  IF +  L   EV +LRG++      SR
Sbjct: 180 LEAFFQDLGRYILEIG-FTDERRFPYAMRRLRRIFHKAGLTLGEVQMLRGLLHQ----SR 234

Query: 252 QSSRRNN 258
            + RR +
Sbjct: 235 FAQRRKD 241


>gi|170699309|ref|ZP_02890358.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           IOP40-10]
 gi|170135801|gb|EDT04080.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           IOP40-10]
          Length = 273

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 18/258 (6%)

Query: 1   MTPYAPQLQNSAKGPV---------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           + P AP    +A  P           +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 5   LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64

Query: 52  WPSE--KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
              +  +A + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA 
Sbjct: 65  HVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QAV ++ +E +
Sbjct: 125 QACTQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYE-L 182

Query: 170 ENSIVSSEKNVKEQ----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
             + +     ++E      T A   E+     +LE +L    +  P    KK++  L  +
Sbjct: 183 RVAFLEQGSELREAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRL 241

Query: 226 FIRPELMREEVFLLRGIV 243
           F R  L REEV +LRGI 
Sbjct: 242 FARTGLEREEVNILRGIA 259


>gi|237729301|ref|ZP_04559782.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909030|gb|EEH94948.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 101/189 (53%), Gaps = 5/189 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     TQLR+V+            +  + D +ID++ VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGD-IIDNINVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P E   +L E+    ++  ++FGRE  GLTNEE
Sbjct: 64  LADALHDVDFTIATTARSRAKFHYYATPVELVPLLQEKSTWMEHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATKGELL 193
           +AL++ +   P+   +PSLN+ QAV++  ++ +   I    KNV+   E    A +  +L
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ-LAGLIQQPAKNVEVTDELQLQALRARVL 182

Query: 194 SFLDYLEIS 202
             L  L +S
Sbjct: 183 RLLATLNVS 191


>gi|315187477|gb|EFU21233.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 236

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 6/200 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+  EN+GMVARAM N    +L LV P     S  A+  + +A+ +++  RV   
Sbjct: 4   VILVEPEGAENVGMVARAMANMGRERLVLVRPACDHLSPPAQRYAVHAESILEGARVCET 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+  +    A T R+       L   E    L E  F+G+ V ++FGRER GLT+EE
Sbjct: 64  LAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAE--FTGREVALVFGRERTGLTSEE 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   + I++ P +   PSLN++QAV+++++E M  S +S   N +E   P  +  ++   
Sbjct: 122 VQACDLILTIPSSGSCPSLNLAQAVMVVLYELMRASFLSLAPNREEDLRPYLEEAVVRAR 181

Query: 197 DYLEISLEERGYFRPVEKKK 216
           +     LE+ GY+R + ++K
Sbjct: 182 EV----LEKLGYYRNIPEEK 197


>gi|192360664|ref|YP_001981951.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190686829|gb|ACE84507.1| RNA methyltransferase, TrmH family, group 1 [Cellvibrio japonicus
           Ueda107]
          Length = 286

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 132/253 (52%), Gaps = 17/253 (6%)

Query: 8   LQNSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           + N+A  P     I+LV+     NIG  ARAM N  L +L LV P++ +PS+KA   +A 
Sbjct: 1   MSNAANAPFANIRIVLVNTSHPGNIGGAARAMKNMGLDRLYLVAPKE-YPSDKAVWRAAG 59

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQN- 120
           A  V+D+  V   L EAIA    +  T+AR R     +L P++      E I++  G++ 
Sbjct: 60  ATDVLDNAVVVETLDEAIAGCSLVVGTSARERRIPWPLLDPRQCG----ESIWAEAGEHE 115

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178
           V ++FGRE  GLTNEE+      +  P N  + SLN++ AV ++ +E     + + E   
Sbjct: 116 VAVVFGREDRGLTNEELHKCTYHVHIPANAEYSSLNLATAVQVICYEIRMAYLQAVEGKS 175

Query: 179 --NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
             N      PA  G L ++  +LE +L + G+  P +  K+ +  L  ++ R  L + E+
Sbjct: 176 LPNHHWDMPPADAGALENYYQHLEQALVDLGFLDP-DNPKQTMTRLRRLYNRVRLDQMEL 234

Query: 237 FLLRGIVSTLDKF 249
            +LRG+++ +  +
Sbjct: 235 NILRGVLTAMQNY 247


>gi|311694375|gb|ADP97248.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
          Length = 287

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 131/256 (51%), Gaps = 20/256 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  L  L LVNP   +P E + + +A A  V+DS  V S+
Sbjct: 20  IVLVETSHSGNIGAVARAMKNMGLGNLWLVNP-SSFPDEASYARAAGASDVLDSAHVVSS 78

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD   +  T+AR R     V AP EAA    E   SG  V ++FGRE  GL+N+E
Sbjct: 79  LDEALADCVLVMGTSARGRKVPWPVCAPPEAAAAAAEHAGSGP-VAMVFGRENHGLSNDE 137

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKEQNTPATKG- 190
           +   +  I  P NP + SLN++ AV +M +E     + S E       +K    P  +G 
Sbjct: 138 LQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMYYLRSLEGGEGSPYLKSMTRPGDEGW 197

Query: 191 --------ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
                   ++  F  +LE  L +  + R  E  ++++  L  +F R  L + E+ +LRGI
Sbjct: 198 DVPPAKVHDVEGFFGHLEQVLIDVDFHR-RENPRQLMTRLRRLFQRARLDQMEINILRGI 256

Query: 243 VSTLDKFSRQSSRRNN 258
           ++ + K    +  RNN
Sbjct: 257 LTAVQK---AAGTRNN 269


>gi|220904214|ref|YP_002479526.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868513|gb|ACL48848.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 250

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75
           I+LV  +  ENIGM ARA  N   + L LV+P + W  EKAR  ++     ++D V+V++
Sbjct: 10  IVLVKTRFPENIGMAARACVNMGCSSLSLVDP-ERWDKEKARPLATPKGQDLLDDVKVYA 68

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L EA+A +  +  TTAR     +S+L+P  AA  + E +  G+ V ++FG E  GL NE
Sbjct: 69  DLPEAVAPVTLVVGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFGPEDRGLNNE 128

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           EI   + +++ P +P   SLN++QAVLL+++EC +
Sbjct: 129 EITHCHKLVTIPTDPAASSLNLAQAVLLLLYECAD 163


>gi|294650616|ref|ZP_06727971.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823499|gb|EFF82347.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 278

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 137/268 (51%), Gaps = 21/268 (7%)

Query: 9   QNSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           QN+   P+    I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A
Sbjct: 6   QNNMTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGA 64

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +I+ + +   L++AI D H ++ T+AR+R     +L  + AA          QN+ I+
Sbjct: 65  QDLIEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALHAASQQQNIAIV 124

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VS 175
           FGRE  GLTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E    ++          +
Sbjct: 125 FGREDRGLTNEELALANYNLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTTN 184

Query: 176 SEKNVKEQNTP------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
            +  +K+Q T        T+ ++  F  + E  L E  +  P +  + +   L  +F R 
Sbjct: 185 EQMQLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIEFLDP-DNPRLLPLRLRRLFGRI 243

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRN 257
           +L R E  LLRG+ S +   +  S +++
Sbjct: 244 QLDRMEYHLLRGVFSRVQSLANGSWKKS 271


>gi|110833374|ref|YP_692233.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110646485|emb|CAL15961.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
           borkumensis SK2]
          Length = 261

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 133/250 (53%), Gaps = 21/250 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+     NIG  ARAM    L+ LRLV P+  +PS +A + ++ A  V+++ +V ++
Sbjct: 7   IVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQS-YPSVEATARASGAGDVLEAAQVCNS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLT 133
           + EA+     +  T+AR R      L P++ A  L+  + +      + ++FGRE  GLT
Sbjct: 66  VDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQDTRIAVLFGREDRGLT 125

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------- 185
           N+E+   N  +S P NP +  LN++ AV L+ +E +  +++  +  ++E  +        
Sbjct: 126 NDELRRCNLHVSVPANPEYGVLNVASAVQLISYE-LRLALLGDDFELQESRSRREVMPLP 184

Query: 186 -------PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                  PAT   +  FLD+LE  + + G+  P ++  +++  +  +F+R    + E+ +
Sbjct: 185 EMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNP-QQPGQVMTRMRRLFMRARPDKMEMSI 243

Query: 239 LRGIVSTLDK 248
           LRG++  L+K
Sbjct: 244 LRGVLVALEK 253


>gi|154706594|ref|YP_001424590.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
 gi|154355880|gb|ABS77342.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 131/236 (55%), Gaps = 11/236 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    NIG  ARAM     ++L LV P + +P E+A + +A AD V+ S RV  +
Sbjct: 7   IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASARVVDD 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+   + ++ T+AR+R     +   +E A    + +    N+ I+FGRER GLTNEE
Sbjct: 66  LTAALEGCNLVFGTSARSRTLPWLLKTARECA---EQSVQHQGNIAIVFGRERSGLTNEE 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKGEL 192
           +A     ++ P    F SLN++QAV ++ +E     + + +   + QNTP    AT  ++
Sbjct: 123 LAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDP--RHQNTPIQQLATADQM 180

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L +  +  P ++ K ++  L  +F R ++   E+ +LRGI++++ +
Sbjct: 181 EGFYVHLEKTLVDIKFIDP-KQPKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235


>gi|307151216|ref|YP_003886600.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7822]
 gi|306981444|gb|ADN13325.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7822]
          Length = 256

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 7/233 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G VAR M N  L +L LVNP+    S++AR  + +   +++ ++  ++
Sbjct: 11  IILVEPAGALNVGSVARVMKNMGLKRLILVNPQCEPKSDEARRMAVHGQDILEQLQQVNS 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+       ATT R+R       +P+ A   L   +       IIFG E  GL+N E
Sbjct: 71  LPQALVGCQRAIATTGRSRTLPTHFESPRAALPWL---LTPHSTSAIIFGPEDRGLSNSE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194
           +  +   +  P NP +PSLN++QAV +  +E  + ++ +S   + E N+   AT   L +
Sbjct: 128 LNYAQRFVCIPANPDYPSLNLAQAVAICAYELRQAALTTSASEL-EVNSLETATLDALEA 186

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +   LE  L + GY  P   + +M + +  ++ +  L +EE+ +LRGIV  +D
Sbjct: 187 YYQDLETLLLKIGYLYPHTARARM-EKIRRLYYKAHLHQEELAMLRGIVRQMD 238


>gi|322831757|ref|YP_004211784.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
 gi|321166958|gb|ADW72657.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
          Length = 245

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    L+ L LVNP    P  +A S SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSSLYLVNPLVK-PDSQAISLSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E     + +      V ++FGRER GLTNEE
Sbjct: 66  LDEALAGCSLVIGTSARSRTLPWPMLEPRECG-EHSAKAAQTAPVALVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTP-ATKGEL 192
           +   N  +  P NP + SLN++ AV ++ +E     +    +++  ++ + TP     +L
Sbjct: 125 LQKCNYHVCIPANPEYSSLNLAMAVQIIAYEVRVAHLALLEAAKPQIEYEETPYPLVDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L E G+ R     + M   L  +F R     +E+ +LRGI+++++K
Sbjct: 185 ERFYQHLEKTLLETGFIRQAHPGQVM-SKLRRLFTRARPESQELNILRGILTSIEK 239


>gi|24373814|ref|NP_717857.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24348212|gb|AAN55301.1|AE015668_2 RNA methyltransferase, TrmH family, group 1 [Shewanella oneidensis
           MR-1]
          Length = 241

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV      NIG  ARAM    L+ L L  PR     +    ++  +D +   V+V S 
Sbjct: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHLVKVDS- 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  GLTNEE
Sbjct: 66  LQEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTEGITGP-VAIVFGRENHGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      ++ P NP + SLN++QAV ++ +E     +   E     +  P +  +L  F 
Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQMEAPQAVEEYPLS-ADLERFF 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK
Sbjct: 184 VHLESTLSSTGFIIK-NHPGQVMTKLRRMFSRARIESQEMNILRGILTSIDK 234


>gi|238753893|ref|ZP_04615253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           ruckeri ATCC 29473]
 gi|238707881|gb|EEQ00239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           ruckeri ATCC 29473]
          Length = 257

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 7/254 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A  + +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCNLVIGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGEL 192
           +   +  ++ P NP + SLN++ AV ++ +E     ++     +  + +E+       +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQAAITPLSEEEEAPYPLIDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE  L + G+ R      +++  L  +F R     +E+ +LRG++++++K  + 
Sbjct: 185 ERFYQHLEQVLSQTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243

Query: 253 SSRRNNVLLQKTEK 266
               NN  ++K ++
Sbjct: 244 QKSANNAHMKKDKE 257


>gi|149926793|ref|ZP_01915052.1| probable methyltransferase [Limnobacter sp. MED105]
 gi|149824345|gb|EDM83563.1| probable methyltransferase [Limnobacter sp. MED105]
          Length = 269

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 12/239 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
           I+LV      N+G VARAM    L  LRLV P+  D   +E+A S ++ A  V++  R++
Sbjct: 12  IVLVKTSHPGNVGSVARAMKTMGLNDLRLVEPKTKDICSTEEAISLASGASDVLEQARIY 71

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD    +A +AR R+   S+ +P+EAA        SG     +FG ER GL+N
Sbjct: 72  NTLPEALADRSVAFALSARMRDLGPSLQSPQEAAREALNLTQSGIGAAFVFGAERTGLSN 131

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV------WECMENSIV---SSEKNVKEQNT 185
           +E+ + N  ++   NP++ SLN+SQAV ++       W   E ++    S   +V++   
Sbjct: 132 DELLVCNRQVTIAANPVYSSLNLSQAVQIVAYALRTEWAAGEFAVTDQGSLADSVRQGGK 191

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            AT   +     +   ++E   +  P +K KK++  L  +  +  L +EEV +LRG  S
Sbjct: 192 LATVKAVADLQAHWLEAMEAVDFLNP-DKPKKVVQRLARMLAKTPLEQEEVDMLRGFFS 249


>gi|190575201|ref|YP_001973046.1| putative SpoU family tRNA/rRNA methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|190013123|emb|CAQ46755.1| putative SpoU-family tRNA/rRNA methyltransferase [Stenotrophomonas
           maltophilia K279a]
          Length = 256

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            +LV  Q   N+G  ARA+    L +L LV P      E+A   SA A+ V+    V + 
Sbjct: 12  FVLVGTQHPGNMGAAARALKTMGLARLVLVAPEKPL-DEEAFRRSAGAEDVLGDAPVVAT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD   +   TAR R        P +AA     +   G  V ++FGRER GLTNEE
Sbjct: 71  LAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRERTGLTNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKGE 191
           + L +A +  P +P F SLN++ AV ++ +E             +E   +EQ   A+  +
Sbjct: 131 LQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA--ASHEQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           + SF   L  +L+E  + +    +  M   L  +F+R E   +EV LLRGI++   + +R
Sbjct: 189 MESFFAQLGDTLDEIDFHKGRAPESAM-RKLRRLFLRSEPSEQEVRLLRGILADTQRMAR 247


>gi|326796538|ref|YP_004314358.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
 gi|326547302|gb|ADZ92522.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
          Length = 239

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 134/242 (55%), Gaps = 16/242 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM N  L++L LV+P+  +PSE+A S ++ A  ++DS  V   
Sbjct: 7   IVLVNTSHPGNIGGAARAMKNMGLSKLVLVSPK-VFPSEEAVSRASGASDLLDSAVVVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI+D   +  T+AR R+    +L P+E+A +  +    G     +FGRE  GLTNEE
Sbjct: 66  LEEAISDCQLVIGTSARERHIPWPLLDPRESAELTYK---EGLETAFVFGREDRGLTNEE 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM-------ENSIVSSEKNVKEQNTPATK 189
           +   +  +  P    F SLN++ AV ++ +E         ++ IV S+ +V      AT 
Sbjct: 123 LQRCHYHVHIPSVEAFSSLNLATAVQVIAYELRMKLLSLGDSPIVQSKWDVP----AATS 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++   L++LE  L E  +  P +  ++++     ++ R ++ ++E+ +LRG+++ ++K 
Sbjct: 179 EQMDHMLEHLENVLGEIEFLDP-KAPRQVMTRFRRLYQRAQMDQQEMGMLRGVLTAIEKQ 237

Query: 250 SR 251
            R
Sbjct: 238 CR 239


>gi|170726126|ref|YP_001760152.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169811473|gb|ACA86057.1| RNA methyltransferase, TrmH family, group 1 [Shewanella woodyi ATCC
           51908]
          Length = 254

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 12/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++       +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-EPDGHSVALAAGASDILKHAVTVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  GLTNEE
Sbjct: 66  VAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVSSALTGP-VAIVFGRENNGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQNTPA 187
           +   N  ++ P NP + SLN++QAV ++ +E     +   +++         V+ +N   
Sbjct: 125 LQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPADYVEPENEYP 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              E  +F  +LE +L   G+    +   +++  L  +F R  L ++E+ +LRG+++++D
Sbjct: 185 FASERENFFTHLEKTLLNTGFIVK-QHPGQVMTKLRRLFSRARLEKQEMNILRGMLTSID 243

Query: 248 K 248
           K
Sbjct: 244 K 244


>gi|148653047|ref|YP_001280140.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148572131|gb|ABQ94190.1| RNA methyltransferase, TrmH family, group 1 [Psychrobacter sp.
           PRwf-1]
          Length = 286

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 1/186 (0%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           ++P L+       I++V+  L  NIG  ARAM    LT L +VNP+     E + + +A 
Sbjct: 19  HSPDLRQRLNSVRIVMVNTTLPANIGSAARAMLTMGLTDLVVVNPKHPI-DEDSIAHAAG 77

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  V+   RV   L EA++D   ++A ++R R+  + V+ P EAA ++ +R      V I
Sbjct: 78  AQSVLRDCRVVDTLDEALSDCQLVFAASSRQRHIPRPVVTPDEAAQLVLDRPIGETKVAI 137

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FGRE  GLTNEE+AL++  I    NP +P LN++ AV ++        +  S   + + 
Sbjct: 138 LFGREDRGLTNEELALADYHIQIDANPDYPVLNVASAVQVIASFFYSRFLQHSHSKLNQT 197

Query: 184 NTPATK 189
           N  A K
Sbjct: 198 NDTADK 203


>gi|194366519|ref|YP_002029129.1| TrmH family, group 1 RNA methyltransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|194349323|gb|ACF52446.1| RNA methyltransferase, TrmH family, group 1 [Stenotrophomonas
           maltophilia R551-3]
          Length = 256

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 9/246 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   N+G  ARA+    L +L LV P      E+A   SA A+ V+    V + L
Sbjct: 13  VLVGTQHPGNMGAAARALKTMGLARLVLVAPEKPL-DEEAFRRSAGAEDVLGDAPVVATL 71

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R        P +AA     +   G  V ++FGRER GLTNEE+
Sbjct: 72  AEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRERTGLTNEEL 131

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKGEL 192
            L +A +  P +P F SLN++ AV ++ +E          +V S   V+E    A+  ++
Sbjct: 132 QLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPVVESGTGVRE--PVASHEQM 189

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            SF   L  +L+E  + +    +  M   L  +F+R E   +EV LLRGI++   + +R 
Sbjct: 190 ESFFAQLGDTLDEIDFHKGRAPESAM-RKLRRLFLRSEPSEQEVRLLRGILADTQRMARL 248

Query: 253 SSRRNN 258
           +   N 
Sbjct: 249 AQAGNK 254


>gi|118602504|ref|YP_903719.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567443|gb|ABL02248.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 243

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++V+     NIG  ARAM N +L+ L LVNP+ G+PS  A + ++ AD V+ +  V  +
Sbjct: 10  VVMVNTTEPGNIGAAARAMKNMSLSYLYLVNPK-GYPSAIATARASGADDVLSNAVVCES 68

Query: 77  LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           LKEA+  ++ +   +AR RN  ++ +      + +    +   Q V +IFG ER GLTNE
Sbjct: 69  LKEALQGVYLVIGASARQRNIKWRQMDVVGACSEIQKTIMAESQKVAVIFGTERTGLTNE 128

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGELLS 194
           E+ L   +++ P N  + SLN++ A+ +  ++  + N+ +  +K+    N  A   EL +
Sbjct: 129 ELDLCQILMTIPGNSHYFSLNVASAIQVFAYQNYVYNTTIEFKKST---NKLANFDELEN 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           F  +L   LE   YF     K  ++  L   F R    +EEV + RGI   +  F +
Sbjct: 186 FYAHLAQVLEYIEYFEDKRPKALLMRRLRRFFTRAMPEKEEVAIFRGIFRNIKPFKK 242


>gi|293394858|ref|ZP_06639148.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera DSM 4582]
 gi|291422609|gb|EFE95848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera DSM 4582]
          Length = 241

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 12/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALAAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
             EAIA    +  T+AR+R     +L P+E  +     +  G+   V ++FGRER GLTN
Sbjct: 66  FDEAIAGCSLVVGTSARSRTLPWPMLEPRECGV---RAVQEGEQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKG 190
           +E+   +  ++ P NP + SLN++ AV ++ ++     +E     +    +E   P    
Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYDVRVAYLERQQADAPPAPQEAAYPLVD- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F  +LE +L   G+ RP    + M   L  +F R     +E+ +LRG+++++DK
Sbjct: 182 DLERFYQHLEQTLSTTGFIRPTHPGQVM-SRLRRLFTRARPEAQELNILRGMLTSIDK 238


>gi|329296939|ref|ZP_08254275.1| putative RNA methyltransferase [Plautia stali symbiont]
          Length = 228

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P   ENIG  ARAM     ++LR+V   D W    AR  +  A  ++D V+ +  
Sbjct: 5   LILVSPARPENIGAAARAMKTMGFSELRIVAS-DAWQDPAARRVAHGAGEILDHVKTYDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+AD+ F  ATTAR+R  F+    P +A  +L E+      + ++FGRE  GLTNEE
Sbjct: 64  LSAALADVDFSVATTARSRAKFRYYATPAQAETILQEKRQWLNRIALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   + +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LEQVDLLTGIPMAQDYPSLNLGQAVMVYCYQ 154


>gi|39996575|ref|NP_952526.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983456|gb|AAR34849.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
           sulfurreducens PCA]
 gi|298505591|gb|ADI84314.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 255

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVF 74
            I+LV+PQ   N+GMV RAM N  L +LR+V   R   P  +A   + +A  +++  RVF
Sbjct: 17  AIVLVEPQSPGNVGMVCRAMKNMGLGELRIVKGCRLDHP--EALKFAVSARDLLERARVF 74

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++A++D     ATT R+    + + +PKE        + +G    ++FGRE  GLT 
Sbjct: 75  ESLEDALSDTELSVATTRRHGKYRQEIFSPKEIVSKFAANL-AGNRAALVFGREDNGLTT 133

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           +E++L     + P +  + SLN++QAV++  +E    S+ S  + V  ++ P A   E  
Sbjct: 134 DELSLCRWHATIPSSEEYGSLNLAQAVMVFCYELF-TSLGS--RTVGGEDRPLAGSAETE 190

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +++E +L   GY  P +    ++  L  IF R EL   EV +LRG+++ +D
Sbjct: 191 PLFEHMERTLMRIGYLNP-QNPAHLMRSLRRIFARSELDSREVAILRGMMTQID 243


>gi|254513994|ref|ZP_05126055.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
 gi|219676237|gb|EED32602.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
          Length = 254

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 130/235 (55%), Gaps = 6/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    NIG VARAM    L++L LV P + +P ++A   +  A+ V++S  V + 
Sbjct: 8   IVLVEPSHPGNIGAVARAMKTMGLSRLVLVAP-EQFPDQQATWRAVWANDVLESATVVAT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD  F+  T AR+R     VL P+ AA  +  +   G+ V I+FGRE  GL+N+E
Sbjct: 67  LDEAIADCGFVVGTCARDRRLPWPVLDPRRAASEMAAKSRQGE-VAILFGREDNGLSNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193
           +   N  ++ P +  + SLN++ AV ++ +E    +  S + ++ N +     AT+  + 
Sbjct: 126 LMRCNLHLAIPTSEAYNSLNLAMAVQIVCYELHMLVVESSLPTQSNAQWDEPLATQENIE 185

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  +LE ++ + G+  P    ++++  L  ++ R  +   E+ +LRGI++   K
Sbjct: 186 RFYVHLEETMSQIGFLNPA-APRQLMPRLRRLYNRLGMDEMELNILRGILTETQK 239


>gi|300717963|ref|YP_003742766.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299063799|emb|CAX60919.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 242

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI    +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLV-KPDSQAIALAAGASDVIGEAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R+    +L P+E  I   + +  GQ   V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRSLPWPMLDPRECGI---KSVQEGQQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E +  + + S++ V+   E++      +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQIIAYE-VRMAFLQSQETVQPEYEESPYPLVDD 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  ++E  +   G+ R      +++  +  +F R    R+E+ +LRG++S+L K
Sbjct: 182 LERFYQHMEQMMTHSGFIRE-GSPGQVMSKMRRLFTRARPERDELNILRGMLSSLQK 237


>gi|293608356|ref|ZP_06690659.1| RNA methyltransferase [Acinetobacter sp. SH024]
 gi|292828929|gb|EFF87291.1| RNA methyltransferase [Acinetobacter sp. SH024]
          Length = 279

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 15/247 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L +L LV P+  +P    ++ +A +  + + + +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGSQDLFEHLEIVDT 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D H ++ T+AR+R     +L  + AA    +    GQ + I+FGRE  GLTNEE
Sbjct: 77  LEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-- 194
           +AL+N  ++ PVNP +  LN++QA+ ++ +E   +++     +      P  +G+ +   
Sbjct: 137 LALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQQNLDQDADEMPLVQGQSMQWD 196

Query: 195 -----------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                      F  +LE  L E  +  P +  + +   L  +F R +L R E  LLRGI 
Sbjct: 197 EPLVTQKQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRMEYHLLRGIF 255

Query: 244 STLDKFS 250
           S +   +
Sbjct: 256 SRVQALT 262


>gi|254522636|ref|ZP_05134691.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
 gi|219720227|gb|EED38752.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
          Length = 275

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            +LV  Q   N+G  ARA+    L +L LV P      E+A   SA A+ V+    V + 
Sbjct: 31  FVLVGTQHPGNMGAAARALKTMGLARLVLVAPEKPL-DEEAFRRSAGAEDVLGDAPVVAT 89

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD   +   TAR R        P +AA     +   G  V ++FGRER GLTNEE
Sbjct: 90  LAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRERTGLTNEE 149

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKGE 191
           + L +A +  P +P F SLN++ AV ++ +E             +E   +EQ   A+  +
Sbjct: 150 LQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA--ASHEQ 207

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           + SF   L  +L+E  + +    +  M   L  +F+R E   +EV LLRGI++   + +R
Sbjct: 208 MESFFAQLGDTLDEIDFHKGRAPESAM-RKLRRLFLRSEPSEQEVRLLRGILADTQRMAR 266


>gi|83647158|ref|YP_435593.1| rRNA methylase [Hahella chejuensis KCTC 2396]
 gi|83635201|gb|ABC31168.1| rRNA methylase [Hahella chejuensis KCTC 2396]
          Length = 257

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 135/247 (54%), Gaps = 15/247 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  AR M N  L++L LV P D +P + A S ++ A  V+ S +V ++
Sbjct: 7   IVLVNTSHPGNIGATARVMKNMRLSRLVLVEP-DRFPDDDATSRASGALDVLGSAQVVAS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNE 135
           L+EAI     +  T+AR R+    V  P++ A  + +R+ + + +V I+FGRE  GLTN+
Sbjct: 66  LEEAIDGCVLVVGTSARGRSIPWPVRNPRDLADDVYDRVATTRGDVAIVFGREERGLTND 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTP------ 186
           E+   +  +  P NP + SLN++ A  ++ +E     ++ +E+N   ++  + P      
Sbjct: 126 ELQRCHLHVHIPSNPDYSSLNVAMAAQVICYELHMRWLLENEENQSYIQRLDGPGDAGWD 185

Query: 187 ---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              AT  E+  +L +LE +L +  +  P E  ++++  L  ++ R  L + E+ +LRGI+
Sbjct: 186 VEAATADEIERYLAHLEQTLVDIEFHDP-ENPRQLMSRLRRLYQRARLDKMEINILRGIL 244

Query: 244 STLDKFS 250
            +  K +
Sbjct: 245 RSTQKMA 251


>gi|206578299|ref|YP_002237115.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|288934076|ref|YP_003438135.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|290508272|ref|ZP_06547643.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
 gi|206567357|gb|ACI09133.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|288888805|gb|ADC57123.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|289777666|gb|EFD85663.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
          Length = 244

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 21/243 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +  GQ+  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEGQHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + +     +EQ  PA   E   
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAT-----QEQAQPAVDHEEAP 177

Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F  +LE +L   G+ RP     ++++ L  +F R     +E+ +LRG++++
Sbjct: 178 YPLVDDLERFYGHLEQTLLATGFIRP-NHPGQVMNKLRRLFTRARPESQELNILRGMLAS 236

Query: 246 LDK 248
           +++
Sbjct: 237 IEQ 239


>gi|294140359|ref|YP_003556337.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293326828|dbj|BAJ01559.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
           DSS12]
          Length = 252

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 14/242 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  P+   P   + + +A A  ++    +  +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-QPDGHSVALAAGASDILKHAVIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EAIAD   + AT+AR+R     +L P+EA   L      G  V I+FGRE  GL+NEE
Sbjct: 66  VAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALDGP-VAIVFGRENNGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT-------- 188
           +   N  +S P NP + SLN++QAV ++ +E    + +  EK   E+  PA         
Sbjct: 125 LQKCNYHVSIPANPEYTSLNLAQAVQIICYEA-RVAHLEHEKREFEKGRPADYVEEKIEY 183

Query: 189 --KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               E  +F  +LE +L   G+    +   +++  L  +F R  L R+E+ +LRG+++++
Sbjct: 184 PFAKERENFFGHLESTLLGTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGMLTSI 242

Query: 247 DK 248
           DK
Sbjct: 243 DK 244


>gi|114330429|ref|YP_746651.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114307443|gb|ABI58686.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas eutropha
           C91]
          Length = 248

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 11/243 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L       NIG  ARAM    L +L L+NP+  +P  +A + ++NA  ++++  V SN
Sbjct: 12  IVLSHTSHPGNIGATARAMKTMGLNKLYLINPK-SFPDSEADARASNARDILETAHVCSN 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L+EA+ D     A TAR R+        ++AAI   E I   Q+  V ++FGRE  GLT 
Sbjct: 71  LEEALGDTFLAAALTARRRDLPHPTCNARQAAI---ELIRHAQHHPVALLFGRESAGLTA 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191
            EI+     +  P NP   SLN++ AV +M +E    +E    +     +  +  A+  E
Sbjct: 128 AEISHCQVTVQIPANPDCSSLNLAAAVQVMAYELRMVLEEDAAAHYFASRLPDA-ASLHE 186

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +     +LE  +   G+  P ++ K ++  +  +F R  L +EEV LLRG+++ +D  + 
Sbjct: 187 IEGLHYHLERVMIHSGFMDP-DQPKHLMRRIRRLFARTRLEKEEVNLLRGLLTAVDPHNS 245

Query: 252 QSS 254
             S
Sbjct: 246 SKS 248


>gi|320654588|gb|EFX22600.1| putative RNA methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 228

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +        R +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRRVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|308185599|ref|YP_003929730.1| RNA methyltransferase [Pantoea vagans C9-1]
 gi|308056109|gb|ADO08281.1| putative RNA methyltransferase [Pantoea vagans C9-1]
          Length = 245

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P   ENIG  ARAM     +QLR+V   D W    AR  +  A  ++D+V+ F+ 
Sbjct: 16  LILVSPARPENIGAAARAMKTMGFSQLRIV-ASDAWQDPAARRVAHGAGEILDNVQTFAT 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+ F  ATTAR+R  F+    P++    L E+     ++ ++FGRE  GLTNEE
Sbjct: 75  LAEALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEE 134

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----MENSIVSSEKNVKEQNTPATKGE 191
           +   + +   P+   +PSLN+ QAV++  ++      +E  + S+      Q   A +  
Sbjct: 135 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSKLNQVEAPVASAADG---QQLQALRQR 191

Query: 192 LLSFLDYLEISLEER 206
               L  L++S +E+
Sbjct: 192 FHQLLAQLDVSDDEK 206


>gi|304396506|ref|ZP_07378387.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
 gi|304356015|gb|EFM20381.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
          Length = 245

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P   ENIG  ARAM     +QLR+V   D W    AR  +  A  ++D+++ F+ 
Sbjct: 16  LILVSPARPENIGAAARAMKTMGFSQLRIV-ASDAWQDPAARRVAHGAGDILDNIQTFAT 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F+    P++    L E+     ++ ++FGRE  GLTNEE
Sbjct: 75  LADALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEE 134

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----MENSIVSSEKNVKEQNTPATKGE 191
           +   + +   P+   +PSLN+ QAV++  ++      +E  + S+      Q   A +  
Sbjct: 135 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSTLNQVEAPVASAADG---QQLQALRQR 191

Query: 192 LLSFLDYLEISLEER 206
               L  LE+S +E+
Sbjct: 192 FHQLLAQLEVSDDEK 206


>gi|30249901|ref|NP_841971.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
 gi|30180938|emb|CAD85864.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrosomonas europaea ATCC 19718]
          Length = 246

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 7/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L       NIG  ARAM    L++L LVNP+  +P  +A + ++NA  +++S  V ++
Sbjct: 12  IVLSHTSHPGNIGATARAMKTMGLSRLYLVNPKS-FPDSEADARASNARDILESACVCTS 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+ D     A TAR+R+        ++AA  L  R      V ++FGRE  GLT+ E
Sbjct: 71  LEEAMGDTFLAAALTARSRDLSHPTRNARQAAGELI-RYAHHHPVALLFGRESAGLTSAE 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193
           I+     +  P N  + SLN++ AV +M +E    +E  +V+ E +  +   PA+  E+ 
Sbjct: 130 ISHCQLTVQIPANSAYSSLNLAAAVQIMAYELRMVLEEGVVADEPD-PQLPEPASLQEIE 188

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
               +LE  + + G+  P + K+ M   +  +F R  L +EEV +LRG+++ ++
Sbjct: 189 GLHHHLEQVMVQSGFLDPTQPKRLMR-RMRRLFARTRLEKEEVNILRGLLTAVN 241


>gi|159468668|ref|XP_001692496.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278209|gb|EDP03974.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 154

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 13/153 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVF 74
           V+ILV+P+ GENIG  AR M NF L +LRLV P  G WP+EKAR+ +A A  +ID+ +V+
Sbjct: 1   VVILVEPKRGENIGAAARGMKNFGLRELRLVRPAGGEWPNEKARAVAARAVDLIDAAKVY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+ADL ++YA + R R      L P            +G  +G++FGRE  GL N
Sbjct: 61  DDLDAALADLQYVYAASGRPRAQVCDALPP------------AGTRIGVMFGREDNGLYN 108

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +E+  +NAI++   +P F SLN+ QAVL+  +E
Sbjct: 109 DELVRANAILTIDTDPNFYSLNLGQAVLITCYE 141


>gi|37527165|ref|NP_930509.1| hypothetical protein plu3285 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81418808|sp|Q7N222|TRMJ_PHOLL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|36786599|emb|CAE15659.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 241

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 126/243 (51%), Gaps = 15/243 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    LT L LVNP    P   A + SA A  VI    +  +
Sbjct: 7   IILVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-QPDSHAIALSAGASDVIGHATIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133
           L +A+A    +  T+AR+R     ++ P+E      ER        +V I+FGRER GLT
Sbjct: 66  LDKALAGCGLVIGTSARSRTLSWPMVEPRECG----ERSVQQAEHASVAIVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---- 189
           NEE+   +  ++ P NP + SLN++ AV L+ +E     +   +K   EQ T   +    
Sbjct: 122 NEELQKCHYHLNIPTNPEYGSLNLAMAVQLVSYEIRMAYLARQDKT--EQKTDEVEYPLA 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++  F  +LE  L + G+ R      ++++ L  +F R     +E+ +LRGI+S+++K+
Sbjct: 180 DDMERFYHHLECVLNDSGFIRKAH-PGQIMNRLRRLFTRARPEMQELNILRGILSSVEKW 238

Query: 250 SRQ 252
           +++
Sbjct: 239 AKK 241


>gi|292489067|ref|YP_003531954.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292900195|ref|YP_003539564.1| tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200043|emb|CBJ47168.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291554501|emb|CBA22048.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312173223|emb|CBX81478.1| putative RNA methyltransferase [Erwinia amylovora ATCC BAA-2158]
          Length = 241

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAKIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA +    +  T+AR+R+    +L P+E  +   + +  GQ   V ++FGRER GLTN
Sbjct: 66  LDEATSGCSLVVGTSARSRSLPWPMLDPRECGL---KSVEEGQQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191
           +E+   +  ++   NP + SLN++ AV ++ +E       S+ + +    E + P    +
Sbjct: 123 DELQKCHYHVAIAANPQYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQYHESSYPLVD-D 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  ++E  + + G+ R     + M   +  +F R    R+E+ +LRG++S+L+K
Sbjct: 182 LERFYQHMEKMMTDSGFIRAASPGQVM-SKMRRLFTRARPERDELNILRGMLSSLEK 237


>gi|332992265|gb|AEF02320.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas sp. SN2]
          Length = 255

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV      NIG  ARAM    L+ L LVNP    P  +A + +A A  V+ + ++ S 
Sbjct: 7   IILVSTSHTGNIGSTARAMKTMGLSSLYLVNPVH-EPDGQASALAAGAGDVLANAKIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA++D   +  T+AR+R +   +L P+E    L + + S   V ++FGRE  GL+NEE
Sbjct: 66  LEEAVSDCGLVVGTSARSRTHSWPMLGPRECGEKLVQEV-SNFPVALVFGRENSGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  +  P NP + SLN++ AV  + +E     +        E+  P  + +L  F 
Sbjct: 125 LQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAYLNRETYPSVEEEYPLNE-DLERFY 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +LE   + R       ++  L  +F R     +E+ +LRGI++++DK
Sbjct: 184 THLETTLESTSFIRK-SHPGVVMTKLRRLFNRARPESQELNILRGILASIDK 234


>gi|322420060|ref|YP_004199283.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
 gi|320126447|gb|ADW14007.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M18]
          Length = 245

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  Q   NIGMV RAM N  L  LRLVNP      +  + + +  D +++S R+F++
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLRDLRLVNPCQVDHLDAIKFAVSARD-LLESARIFTS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133
           L++A+AD  +  ATT R+      +  P E    + ER      G  + ++FGRE  GLT
Sbjct: 68  LEDALADSEYSVATTRRHGKYRSEICTPPE----IVERFAGCAPGSRLALVFGREDSGLT 123

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            +E+AL     +      F SLN+SQAVL+  +E ++ +  +  K  +E    A    L 
Sbjct: 124 TDEVALCRWQSTIETADEFGSLNLSQAVLIFCYEFLKGAAPAPVKAAREL---AGSSSLE 180

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
               ++E +    GY  P +    M+  +  IF R EL   EV  LRG++S +D
Sbjct: 181 PMYSHMEKTFLRIGYLNP-QNPDHMMRTMRRIFSRAELDEREVASLRGLLSQID 233


>gi|170768660|ref|ZP_02903113.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
 gi|170122764|gb|EDS91695.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
          Length = 228

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +  +     R  +  +  +ID++ VFS 
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AYLEPATRWVAHGSGDIIDNIAVFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+ D+ F  ATTAR+R  +     P E   +L E+     ++ ++FGRE  GLTNEE
Sbjct: 64  LEEALQDVDFTVATTARSRAKYHYYATPVELVPLLAEKSAWMNHIALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+ +  +    A +  ++S
Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDASADQYQLRALRERVMS 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|218551706|ref|YP_002385498.1| RNA methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218359248|emb|CAQ91914.1| rRNA methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 228

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 5/189 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM      ++R+V+ +          +  + D +ID++ VFS+
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGD-IIDNIAVFSS 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  F     P E   +L E+     +V ++FGRE  GLTNEE
Sbjct: 64  LAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193
           +AL++ +   P+   +PSLN+ QAV++  ++    M+  I + + + + Q T A +  ++
Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLT-ALRTRVM 182

Query: 194 SFLDYLEIS 202
             L  L+++
Sbjct: 183 RLLSTLDVA 191


>gi|91792812|ref|YP_562463.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
           OS217]
 gi|91714814|gb|ABE54740.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
           OS217]
          Length = 259

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 126/250 (50%), Gaps = 21/250 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  P+   P  ++ + SA A  ++  +    +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPKV-EPDGQSIALSAGASDILKHLTRVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD   + AT+AR+R     +L P+EA I L     +G  V I+FGRE  GL+NEE
Sbjct: 66  LAEAIADCSLVIATSARSRTLDWPMLDPREAGIKLTAEALNGP-VAIVFGRENNGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----------MENS--------IVSSEK 178
           +      ++ P NP + SLN++QAV ++ +E           M++S        IV +E 
Sbjct: 125 LQSCQFHVAIPANPEYSSLNLAQAVQIICYEARVAHLAQLAKMDDSEAAPQAAAIVEAET 184

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
             +E        +L  F  +LE +L   G+       + M+  L  +F R  +  +E+ +
Sbjct: 185 APEEPQAYPLSADLERFYTHLESTLLATGFVIKNHPGQIMM-KLRRLFSRARVEEQEMNI 243

Query: 239 LRGIVSTLDK 248
           LRGI++++DK
Sbjct: 244 LRGILTSIDK 253


>gi|270159572|ref|ZP_06188228.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289165632|ref|YP_003455770.1| methyltransferase [Legionella longbeachae NSW150]
 gi|269987911|gb|EEZ94166.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288858805|emb|CBJ12719.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 251

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 9/244 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV      NIG  ARAM    L  L LV P+  +P  +A+  +A AD +++S  V  +
Sbjct: 8   IILVATSHPGNIGSTARAMKTMGLKSLYLVKPKS-FPDLRAQEMAAGADDLLESAVVTES 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+     I  T+AR R      L P   A ++N++      + I+FGRE  GLTNEE
Sbjct: 67  LDNALVGCQLILGTSARPRGISLPGLTPSSCADLVNQQA-DNTEIAIVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  I+ P NP + SLN++QAV ++ +E     +    +    Q+  AT  E+  F 
Sbjct: 126 LLKCHYHINIPSNPEYSSLNLAQAVQIITYELRMKLLAPKAEVALRQDDYATAEEIEQFY 185

Query: 197 DYLE---ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           ++L+   I ++    F      ++++  +  +F R  L + EV LLRG++S + K    +
Sbjct: 186 EHLKEVFIKIQ----FLKASNPRRLMQRVRRLFNRVSLEKMEVNLLRGMLSQVQKSIEWA 241

Query: 254 SRRN 257
           S+R 
Sbjct: 242 SKRG 245


>gi|251788172|ref|YP_003002893.1| putative RNA methyltransferase [Dickeya zeae Ech1591]
 gi|247536793|gb|ACT05414.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
          Length = 233

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 6/181 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM      +LR+V+         AR  +  +  ++D   VF  
Sbjct: 5   IILVAPARAENVGAAARAMKTMGFGRLRIVDS-TAHLEPAARWVAHGSGDILDGAEVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F    +P +   VL E+    ++  ++FGRE  GLTNEE
Sbjct: 64  LTDALADVEFTVATTARSRARFHYYCSPAQLLGVLEEKRQWVKSAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++     + S  +    + TPA  G+L +  
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQ-----LASLMQVAAAEPTPAESGQLSALR 178

Query: 197 D 197
           D
Sbjct: 179 D 179


>gi|294634936|ref|ZP_06713454.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           ATCC 23685]
 gi|291091645|gb|EFE24206.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           ATCC 23685]
          Length = 238

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 101/181 (55%), Gaps = 9/181 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75
           I+LV P   EN+G  ARAM     T LR+V+ + D  P+  AR  +  A  ++D+   F+
Sbjct: 5   IVLVAPARAENVGAAARAMKTMGFTSLRIVDSQADREPA--ARWVAHGAGDILDNACHFA 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L++A+AD+ F  A+TAR+R  F     P E   +L E+     +  ++FGRE  GLTN+
Sbjct: 63  TLEQALADVEFSVASTARSRARFHYYCTPPELVGILQEKQQWMASCALVFGREDSGLTND 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL + +   P+   +PSLN+ QAV++  ++      +SS   V     PA +GE L+ 
Sbjct: 123 ELALVDLLTGVPMAADYPSLNLGQAVMVFCYQ------LSSLMQVHAVAEPAAQGEQLAA 176

Query: 196 L 196
           L
Sbjct: 177 L 177


>gi|251792921|ref|YP_003007647.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534314|gb|ACS97560.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 244

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 15/238 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LT L LV P+ G   ++A + +A A+ ++ S  V  N
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQGV-DDQAIALAAGAEDLVKSAVVVEN 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A+AD   +  T+AR R+   S++ P+E          +G+ V I+FGRER GLTNEE
Sbjct: 66  FLQAVADCSLVIGTSARLRHLQNSLIEPRECGTKTVAHAMNGK-VAIVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA------TKG 190
           +   +  ++ P NP + SLN++ AV L+ +E     + ++    +  +TPA      +  
Sbjct: 125 LLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLAAT---AEVTSTPANVDIYPSMQ 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F  + E   +  G+     + + ++  L  ++ R EL + E+ +L G++S ++K
Sbjct: 182 ELEYFYHHTEQLYQSLGFI----QNQGVMQKLRRLYGRAELEKTELNILLGMLSAVEK 235


>gi|259907699|ref|YP_002648055.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224963321|emb|CAX54806.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283477553|emb|CAY73469.1| putative RNA methyltransferase [Erwinia pyrifoliae DSM 12163]
          Length = 241

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAKIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAI+    +  T+AR+R+    +L P+E  +   + +  GQ   V ++FGRER GLTN
Sbjct: 66  LDEAISGCSLVVGTSARSRSLPWPMLDPRECGL---KSVEEGQQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKGELL 193
           +E+   +  ++   NP + SLN++ AV ++ +E     + S E    +   TP    E L
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQTQPDETPYPLVEDL 182

Query: 194 S-FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  ++E  + + G+ R     + M   +  +F R    R+E+ +LRG++S+L+K
Sbjct: 183 ERFYQHMEKIMTDSGFIRAASPGQVM-SKMRRLFTRARPERDELNILRGMLSSLEK 237


>gi|94501916|ref|ZP_01308426.1| rRNA methylase [Oceanobacter sp. RED65]
 gi|94425969|gb|EAT10967.1| rRNA methylase [Oceanobacter sp. RED65]
          Length = 253

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 13/248 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVIDSVRV 73
           I+L+      NIG  ARAM    +  L LV P+   P+   + A + ++ A  ++ S +V
Sbjct: 7   IVLIGTSHNGNIGSTARAMKTMGINDLVLVEPKSFDPNNLCDDAIAMASGATDLLASAKV 66

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            S  ++AI D   +   +AR+R+    ++ P++AA    E +  GQ V ++ GRER GLT
Sbjct: 67  VSTFEQAIEDCAVVMGASARSRHLPWPLMHPRKAAAKSMEVLPRGQKVALVLGRERTGLT 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---------NVKEQN 184
           N+E+A+    I  P NP + SLN++ A  ++ +E    ++   +           V   N
Sbjct: 127 NDELAMCQVHIHIPANPDYASLNVAAAAQVLCYEVRMAALDHQQALEPEYEGDWGVSWDN 186

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             AT+GE+  F  +LE +L +  +  P    K+++  L  +F R    + EV +LRGI+ 
Sbjct: 187 ELATQGEMNGFFQHLEETLVDIQFLDP-NNPKQLMPRLRRLFQRAMPDKVEVNILRGILK 245

Query: 245 TLDKFSRQ 252
            + + ++Q
Sbjct: 246 MVLRNNKQ 253


>gi|262369728|ref|ZP_06063056.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262315796|gb|EEY96835.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 282

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 137/263 (52%), Gaps = 29/263 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A  +I+ + +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGATDLIEQIEIVET 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-----IVLNERIFSGQNVGIIFGRERWG 131
           L +AI D H ++ T+AR+R     +L  + AA      V+N++    Q+V ++FGRE  G
Sbjct: 77  LADAIKDCHLVFGTSARSRTIPWPLLDARPAAEKSISAVVNDQ----QDVAVVFGREDRG 132

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKG 190
           LTNEE+A++N  ++ PVN  +  LN++QA+ ++ +E    ++ + E    E  T P T  
Sbjct: 133 LTNEELAMANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLAAVESGKDETATMPVTDT 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDL---------------YSIFIRPELMREE 235
           E + + + L ++ E+   F P    +KML ++                 +F R +L R E
Sbjct: 193 ESMQWDEPL-VTHEQMEQFYP--HIEKMLAEIEFLDPKNPRLLPLRLRRLFGRIQLDRME 249

Query: 236 VFLLRGIVSTLDKFSRQSSRRNN 258
             LLRGI S +   +  + +++N
Sbjct: 250 YHLLRGIFSRVQALNNGTWKKSN 272


>gi|50085211|ref|YP_046721.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531187|emb|CAG68899.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 271

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 21/269 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L+QL LV P+  +P     + +A A  +++ +++   
Sbjct: 6   IVMVNTTLPANIGSALRAMKTMGLSQLVLVAPK-TYPHPDIDALAAGAQDLVEKIKIVDT 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135
           L++AI D H ++ T+AR+R     +L  + AA + ++  I   Q + I+FGRE  GLTNE
Sbjct: 65  LEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRGLTNE 124

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-------MENSIVSS--------EKNV 180
           E+AL+N  ++ PVN  +  LN++QA+ ++ +E        ++N   SS        EK  
Sbjct: 125 ELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQVTEKIE 184

Query: 181 KEQNTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
            + + P     ++  F  +LE  L +  +  P +  + +   L  +F R +L R E  LL
Sbjct: 185 MDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDP-QNPRLLPLRLRRLFGRAQLDRMEYHLL 243

Query: 240 RGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           RGI S +   S    ++    L K E+S+
Sbjct: 244 RGIFSRVQALSHGKWKKTA--LDKEEQSD 270


>gi|271501587|ref|YP_003334613.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345142|gb|ACZ77907.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech586]
          Length = 248

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 9/246 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A S SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +A+     +  T+AR+R     +L P+E  ++    I   Q+  V I+FGRER GLTN
Sbjct: 66  LDQALEGCGLVVGTSARSRTLPWPMLEPRECGVL---SIQEAQHAPVAIVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTP-ATKGEL 192
           EE+   +  ++ P NP + SLN++ AV ++ +E     +   ++  V  + +P     +L
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQQGEVAHEESPYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE +L   G+ R    + ++++ L  +F R     +E+ +LRGI+S + K +  
Sbjct: 183 ERFYQHLEDTLLHTGFIRQ-SHQGQVMNKLRRLFTRARPETQELNILRGILSAITKTTPS 241

Query: 253 SSRRNN 258
              +NN
Sbjct: 242 DPSQNN 247


>gi|270263887|ref|ZP_06192155.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
 gi|270042080|gb|EFA15176.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
          Length = 228

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 6/176 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     T LR+V+  +      AR  +  A  ++D V+ F+ 
Sbjct: 5   IVLVAPARPENVGAAARAMKTMGFTSLRIVDS-EAHLQPAARWVAHGAGEILDGVQTFAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F     P++    L ER        ++FGRE  GLTNEE
Sbjct: 64  LSQALADVDFTVATTARSRARFHYYCTPQQLLGQLGERSQWVNQAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           + L++ +   P+   +PSLN+ QAV++  ++  E   VS+      Q T A +G+L
Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMNVSA-----PQETMANEGQL 174


>gi|317046840|ref|YP_004114488.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316948457|gb|ADU67932.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
          Length = 234

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 3/187 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P   ENIG  ARAM     ++LR+V   D W    AR  +  A  ++DSV+ +  
Sbjct: 5   LILVSPARPENIGAAARAMKTMGFSELRIV-ASDAWQDPAARRVAHGAGEILDSVKTYDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  F+    P +   +L E+      + ++FGRE  GLTNEE
Sbjct: 64  LSEALQDVDFSVATTARSRAKFRYYATPVQVESILQEKRQWLNRIALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKE-QNTPATKGELLS 194
           +   + +   P+   +PSLN+ QAV++  ++    N +V+    V + Q   A +     
Sbjct: 124 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSALNQVVAQPAAVADGQQLQALRARFQQ 183

Query: 195 FLDYLEI 201
            L  LE+
Sbjct: 184 LLVRLEV 190


>gi|87121814|ref|ZP_01077700.1| putative rRNA methylase [Marinomonas sp. MED121]
 gi|86162843|gb|EAQ64122.1| putative rRNA methylase [Marinomonas sp. MED121]
          Length = 247

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 132/240 (55%), Gaps = 9/240 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     N+G +ARAM N  L+ L LV+P D +PSE+A S +A A  ++++  +   
Sbjct: 7   IVLINTFHPGNVGAIARAMKNMGLSNLYLVDPND-YPSEEATSRAAGAVDLLENATIVET 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134
            +EAIAD   +  T+AR+R     ++  +E A   V+     + Q + I+FGRE+ GL N
Sbjct: 66  FEEAIADCSLVVGTSARHRTFQLPIMNARECAESAVIEA---TNQPIAIVFGREKTGLLN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELL 193
           +EIA  +  +    N  +P LNISQAV ++ +E  M +   S+  +V+    P  KG++ 
Sbjct: 123 DEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMASQNKSANTDVEVAEYP-RKGDMD 181

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
            F  +LE +L +   F       K+L+ L   F R    + E+ +LRG+++ + + + ++
Sbjct: 182 LFHTHLEETLYDIN-FVIKNHPGKVLEKLQRFFNRSRPEKSELGILRGVLAAVQRETEKA 240


>gi|153000909|ref|YP_001366590.1| RNA methyltransferase [Shewanella baltica OS185]
 gi|160875617|ref|YP_001554933.1| RNA methyltransferase [Shewanella baltica OS195]
 gi|217973134|ref|YP_002357885.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
 gi|304408987|ref|ZP_07390608.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS183]
 gi|307302990|ref|ZP_07582745.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           BA175]
 gi|151365527|gb|ABS08527.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS185]
 gi|160861139|gb|ABX49673.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS195]
 gi|217498269|gb|ACK46462.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS223]
 gi|304352808|gb|EFM17205.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS183]
 gi|306913350|gb|EFN43772.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           BA175]
 gi|315267805|gb|ADT94658.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS678]
          Length = 242

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 3/234 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++  +    +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRV-EPDGHSIALAAGASDILKHLVKVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD   + AT+AR+R     +L P+EA + L      G  V I+FGRE  GL+NEE
Sbjct: 66  LAEAIADCSLVIATSARSRTLDWPMLEPREAGVRLATEALKGP-VAIVFGRENHGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      ++ P NP + SLN++QAV ++ +E     +   E   +E        +   F 
Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQKEVAEEELTEYPLAADQERFF 184

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +LE +L   G+       + M+  L  +F R  +  +E+ +LRGI+++++K +
Sbjct: 185 AHLETTLLSTGFIIKNHPGQVMM-KLRRLFSRARIESQEMNILRGILTSIEKVT 237


>gi|218886256|ref|YP_002435577.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757210|gb|ACL08109.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 266

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 7/239 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVIDSV 71
           ++LV  +  EN+GMVARA  N     + LV+P      DG P++    ++     ++  V
Sbjct: 7   VVLVKTRFPENVGMVARACANMGARDIVLVDPERWSEADGDPAKAVPLATPKGQDILSGV 66

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV   L EA+AD   ++ TTAR     + +L+P+ AA      +  G  V ++FG E  G
Sbjct: 67  RVVGTLAEAVADCAVVFGTTARTGGWRRELLSPERAAAEACPVLAGGDRVAVVFGPEDRG 126

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190
           LTN+EI   + +++ P  P   SLN++QAVL++++EC++ +     +     ++  A   
Sbjct: 127 LTNDEIEHCHRLLTIPTAPEASSLNLAQAVLVVLYECLKGTATHPFRPGPAPDSRLANHA 186

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           EL    D L  +L    Y R  +     +  +     R  L R E  L+ G+   + + 
Sbjct: 187 ELELLHDTLRDTLLAIDYLR-ADNPDYFMMPVRRFLGRTRLRRHEFDLVMGVCRQVKRM 244


>gi|326795561|ref|YP_004313381.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
 gi|326546325|gb|ADZ91545.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
          Length = 252

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 8/234 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     N+G +ARAM N  L+ L LV+P D +PS++A S +A A  ++++  + S 
Sbjct: 7   IVLINTFHPGNVGAIARAMKNMGLSNLYLVDPND-YPSDEATSRAAGAVDLLENATIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+EAI+D   +  T+AR+R     ++  +E A  V+ E      +V I+FGRE  GL NE
Sbjct: 66  LEEAISDCSLVIGTSARHRTFQLPIMNARECAETVIPEA--KQHDVAIVFGRETTGLLNE 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194
           EIA  +  +    N  +P LNISQAV ++ +E  M N       + KE      K E+  
Sbjct: 124 EIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMANQ--DQSIHAKETAEYPRKKEMDL 181

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE +L    +        K+L+ L   F R    ++E+ +LRG+++ + +
Sbjct: 182 FHEHLEETLYGLNFIIK-NHPGKVLEKLQRFFNRSRPEKQELGILRGVLAAVQR 234


>gi|282900733|ref|ZP_06308675.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194533|gb|EFA69488.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 245

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G +AR M NF L  L LVNP+    S ++   + +A  ++++ R+  N
Sbjct: 13  VILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEILENARIVDN 72

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L  A+A      AT  R+ N    + +P+ A   +L E   S +  G+IFGRE  GLTN+
Sbjct: 73  LTTALAGCDRAIATIGRDYNGELPIESPRHALPWLLAE---SEKPAGLIFGREDRGLTNQ 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           EI  +  ++S P +P + SLN++ AV +  +E +  S+++ E         AT   L S+
Sbjct: 130 EINYAQKLVSIPTSPEYTSLNLATAVSICCYE-LSQSLMTMEPGKMPTRDIATLDVLESY 188

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              LE  L   GY  P     +M +    ++ R EL   EV +LRGI+
Sbjct: 189 YQELESLLLSIGYLYPHTTSSRM-EKFRHLYNRSELTTTEVAMLRGIL 235


>gi|172061034|ref|YP_001808686.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|171993551|gb|ACB64470.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MC40-6]
          Length = 273

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 127/259 (49%), Gaps = 20/259 (7%)

Query: 1   MTPYAPQLQNSAKGPV---------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           + P AP    +A  P           +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 5   LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64

Query: 52  WPSE--KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
              +  +A + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA 
Sbjct: 65  HVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QA+ ++ +E  
Sbjct: 125 QACMQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183

Query: 170 -----ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224
                + S +   +   E  T A   E+     +LE +L    +  P    KK++  L  
Sbjct: 184 VAFLEQGSGLHHAQ--AEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRR 240

Query: 225 IFIRPELMREEVFLLRGIV 243
           +F R  L REEV +LRGI 
Sbjct: 241 LFARTGLEREEVNILRGIA 259


>gi|253988841|ref|YP_003040197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780291|emb|CAQ83452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
           asymbiotica]
          Length = 259

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 13/242 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    LT L LVNP    P   A + SA A  VI S  +  +
Sbjct: 25  IILVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-QPDSHAIALSAGASDVIGSATIVDS 83

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L +A+A    +  T+AR+R     ++ P+E      ER         V I+FGRER GLT
Sbjct: 84  LDKALAGCELVIGTSARSRTLSWPMVEPRECG----ERSVQAAEHVPVAIVFGRERVGLT 139

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKG 190
           NEE+   +  ++ P NP + SLN++ AV L+ +E     +   +K      E   P    
Sbjct: 140 NEELQKCHFHLNIPTNPEYSSLNLAMAVQLVSYEIRMAYLARQDKVEPAADETEYPLVD- 198

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++  F  +LE  L + G+ R      ++++ L  +F R     +E+ +LRGI+++++K++
Sbjct: 199 DMERFYHHLEHVLHDSGFIRKAH-PGQIMNKLRRLFTRARPEMQELNILRGILTSVEKWA 257

Query: 251 RQ 252
           ++
Sbjct: 258 KK 259


>gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 248

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75
           +IL  P+  ENIG VARA  N    Q+ LV P + W   KA   ++ +A  +++++R+  
Sbjct: 7   VILFRPKYPENIGSVARACLNMGCGQIVLVEPWN-WDQGKALPLATHHAGHLLENIRIHG 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+A   F Y TTAR     + +  P+EAA  + E+  +G  V I+FG E  GLTNE
Sbjct: 66  TLAEALAPYSFAYGTTARTGGWRQGIQTPEEAAPRIIEQSNAGAKVAIVFGPEDKGLTNE 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  L N +++ P      SLN+SQAV+++++EC + S+    K
Sbjct: 126 ETDLCNQLLTIPTTDNLTSLNLSQAVMVVLYECFKKSLAKPFK 168


>gi|171320744|ref|ZP_02909755.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MEX-5]
 gi|171094009|gb|EDT39111.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MEX-5]
          Length = 273

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 124/257 (48%), Gaps = 16/257 (6%)

Query: 1   MTPYAPQLQNSAKGPV---------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           + P AP    +A  P           +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 5   LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64

Query: 52  WPSEK--ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
              +   A + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA 
Sbjct: 65  HVQDDPDAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QA+ ++ +E  
Sbjct: 125 QACMQVGTG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183

Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
              +       +   E  T A   E+     +LE +L    +  P    KK++  L  +F
Sbjct: 184 VAFLEQGSELHQAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242

Query: 227 IRPELMREEVFLLRGIV 243
            R  L REEV +LRGI 
Sbjct: 243 ARTGLEREEVNILRGIA 259


>gi|126174613|ref|YP_001050762.1| RNA methyltransferase [Shewanella baltica OS155]
 gi|125997818|gb|ABN61893.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS155]
          Length = 242

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 3/234 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++  +    +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRV-EPDGHSIALAAGASDILKHLVKVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD   + AT+AR+R     +L P+EA + L     +G  V I+FGRE  GL+NEE
Sbjct: 66  LAEAIADCCLVIATSARSRTLDWPMLEPREAGVRLATEALNGP-VAIVFGRENHGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      ++ P NP + SLN++QAV ++ +E     +   E   +E        +   F 
Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRIAHLAQKEVAEEELTEYPLAADQERFF 184

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +LE +L   G+       + M+  L  +F R  +  +E+ +LRGI+++++K +
Sbjct: 185 AHLETTLLSTGFIIKNHPGQVMM-KLRRLFSRARIESQEMNILRGILTSIEKVT 237


>gi|290476021|ref|YP_003468918.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           bovienii SS-2004]
 gi|289175351|emb|CBJ82154.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           bovienii SS-2004]
          Length = 244

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 16/243 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    LT L LVNP    P   + + SA A  VI +  + + 
Sbjct: 7   IILVETSHTGNMGSAARAMKTMGLTNLYLVNPLV-QPDSHSIALSAGASDVIGNATIVNT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L EA+A    +  T+AR+R     ++ P+E      ER         V ++FGRER GLT
Sbjct: 66  LDEALAGCELVIGTSARSRTLSWPMVEPRECG----ERCIKAAGHSPVAVVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------PA 187
           NEE+   N  +  P NP + SLN++ AV L  +E     +   EK+   ++T      P 
Sbjct: 122 NEELQKCNYHLYIPTNPEYGSLNLAMAVQLASYEIRMAYLAVQEKSEHVESTEHEVEYPP 181

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            + ++  F  +LE  L + G+ R      ++++ L  ++ R     +E+ +LRGI++++ 
Sbjct: 182 VE-DMERFYQHLEQVLNDSGFIRKAH-PGQIMNKLRRLYTRARPETQELNILRGILTSMG 239

Query: 248 KFS 250
           K+S
Sbjct: 240 KWS 242


>gi|251788732|ref|YP_003003453.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
 gi|247537353|gb|ACT05974.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
          Length = 249

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 9/243 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A S SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +A+     +  T+AR+R     +L P+E  +     I   Q   V I+FGRER GLTN
Sbjct: 66  LDQALEGCGLVVGTSARSRTLPWPMLEPRECGV---RSIQEAQRAPVAIVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGEL 192
           EE+   +  ++ P NP + SLN++ AV ++ +E     + S ++     E++      +L
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDSQQQGEPAHEESPYPLADDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE +L   G+ R   + + M + L  +F R     +E+ +LRGI+S + K +  
Sbjct: 183 ERFYQHLEETLLHTGFIRQAHQGQVM-NKLRRLFTRARPENQELNILRGILSAITKTASS 241

Query: 253 SSR 255
           + +
Sbjct: 242 TDK 244


>gi|187479053|ref|YP_787077.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
 gi|115423639|emb|CAJ50179.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
          Length = 267

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 127/257 (49%), Gaps = 17/257 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I+V P    N+G  ARA+      +L LV+PR  D     +A + ++ A  V+++ R+ +
Sbjct: 11  IMVQPSHPGNVGSAARAIKTMGFAELVLVDPRLPDMTHQPEAVALASGAADVLENARICA 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133
            L+EA+A +   +A TAR R+        ++AA +  E +    +  V I+ G ER GLT
Sbjct: 71  TLEEALAPVTLAFALTARVRDLGPPPCDIRQAATLSREHLDQKPDGCVAIVLGTERSGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIV-----SSEKNVKEQN 184
           NE+I L   I   P NP + SLN++QA+ L  WE     +E +       S         
Sbjct: 131 NEQIGLCQRICHIPANPEYSSLNVAQALQLAAWELRYALLEAAGATLLPPSKAHQPDPGA 190

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA+   + + L + E +L    +  P    KK++  +  +F R EL R+E+ ++RG+ +
Sbjct: 191 QPASSEAVQAMLAHWEQALVAVEFLNPAH-PKKLMPRMRHLFTRAELSRDEIDMMRGVCT 249

Query: 245 T-LDKFSRQS--SRRNN 258
             LD   R     R+NN
Sbjct: 250 AMLDIAGRAGPRQRKNN 266


>gi|307729273|ref|YP_003906497.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1003]
 gi|307583808|gb|ADN57206.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1003]
          Length = 292

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 123/255 (48%), Gaps = 31/255 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV+PR  +     +A + ++ AD V+    V  
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVANVQSDPEAIAMASGADDVLACAHVVP 84

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++ +H+  A TAR R        P+ AA +  +    G+ + ++FG ER GL+NE
Sbjct: 85  TLADALSGVHWSVALTARQREYGPPQWTPRAAASLARDEALHGE-IALVFGNERTGLSNE 143

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKG---- 190
           ++   +A+   P NP + SLN++QAV ++ +E   N + S E+ +V    T +T      
Sbjct: 144 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMNYLTSGEEAHVHTHATASTSAGRAP 203

Query: 191 ----------------------ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228
                                 E+ S   +LE +L    +  P    KK++  L  +F R
Sbjct: 204 HAPGAAPAGSAAEPAGPRAASDEIESMFAHLESALVALEFLDPA-NPKKLMSRLRRLFAR 262

Query: 229 PELMREEVFLLRGIV 243
             L REEV ++RGI 
Sbjct: 263 SGLEREEVNIVRGIA 277


>gi|157376009|ref|YP_001474609.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157318383|gb|ABV37481.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sediminis
           HAW-EB3]
          Length = 254

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 12/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++       +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVA-PDGHSVALAAGASDILKHAVTVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  GL+NEE
Sbjct: 66  VAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALTGP-VAIVFGRENNGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQNTPA 187
           +   N  ++ P NP + SLN++QAV ++ +E     +   +++         V+  N   
Sbjct: 125 LQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPEGYVEPVNEYP 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              E  +F  +LE +L   G+    +   +++  L  +F R  L R+E+ +LRG+++++D
Sbjct: 185 FAKERENFFSHLEETLLNTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGMLTSID 243

Query: 248 K 248
           K
Sbjct: 244 K 244


>gi|254282434|ref|ZP_04957402.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           NOR51-B]
 gi|219678637|gb|EED34986.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           NOR51-B]
          Length = 244

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM N  L++L LV PR+ +P+ +A   +A+A  V++S R+  +
Sbjct: 8   IVLVHTSSPGNIGGAARAMKNMGLSRLTLVAPRE-FPAPEATWRAASASDVLNSARIVDS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134
           + EAIAD  F+  T+AR R     VL P+  A  + ++ R    + V I+FGRE  GLTN
Sbjct: 67  VDEAIADSQFVVGTSARGRRIPWPVLDPRRCAERLAVSSRT---ERVAILFGREDRGLTN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTP-ATKGE 191
           EE+   N     P +  + SLN++ AV ++ +E     +     E   ++ + P  T  E
Sbjct: 124 EELQRCNLHCHIPSHEDYSSLNLAMAVQIVAYELRMWGLAERLPEAADEDWDVPFVTTEE 183

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +  F  +LE +L + G+  P    ++++  L  +F R  +   E+ +LRGI++   K
Sbjct: 184 MTRFYRHLEETLTDIGFLDPA-APRQLMPRLARLFNRVRIDDMEMGILRGILTEAQK 239


>gi|262274801|ref|ZP_06052612.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
 gi|262221364|gb|EEY72678.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
          Length = 243

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 12/244 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73
           I+LV      NIG  ARAM    L  + LV P    DG    +A + +A A  + ++ R+
Sbjct: 7   IVLVGTTHSGNIGSAARAMKVMGLKHMVLVAPECKVDG----QAIALAAGASDIANNARI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++EA+AD   +  T+ARNR+    +L P+E  I   E       V  +FGRER GLT
Sbjct: 63  VDTVEEAVADCALVIGTSARNRSLEWPMLDPRECGIKAIEEA-PQHPVAFVFGRERTGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPATKGE 191
           NEE+   N  ++ P NP + SLN++ AV  + +E     I S   +  VKEQ+ P  + +
Sbjct: 122 NEELQACNFHVAIPANPAYSSLNLAMAVQTLCYEARMAWIDSQAYKGEVKEQSYPLAE-D 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE  L++ G+         ++  L  +F R     +E+ +LRG++S+++K  +
Sbjct: 181 LERFYVHLEQVLDKTGFINK-SHPGMVMTKLRRLFNRARPESQELNILRGVLSSVEKQMK 239

Query: 252 QSSR 255
           ++ +
Sbjct: 240 EAQK 243


>gi|227112706|ref|ZP_03826362.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 241

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 7/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A+     +  T+AR+R     +L P+E   V + +      V ++FGRER GLTNEE
Sbjct: 66  FDQALEGCGLVVGTSARSRTLPWPMLEPRECG-VRSAQEAEHAPVALVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193
           +   +  ++ P NP + SLN++ AV ++ +E      + + + +   +E   P    +L 
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLVD-DLE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  +LE +L + G+ RP  + + M + L  +F R     +E+ +LRGI+S++ K
Sbjct: 184 RFYQHLEQTLLQTGFIRPAHQGQVM-NKLRRLFTRARPESQELNILRGILSSVQK 237


>gi|22299659|ref|NP_682906.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295843|dbj|BAC09668.1| tll2116 [Thermosynechococcus elongatus BP-1]
          Length = 250

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+PQ   NIG VAR M N  L QL +V+PR     E A+  + +A+ V+    V  +
Sbjct: 9   IVLVEPQGEINIGSVARVMKNMGLQQLWMVSPRCDPKGELAQRWAVHAEDVLQQANVTDS 68

Query: 77  LKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+ A+AD   ++AT  R+  +       P++AA     ++ +     ++FGRE  GLTN 
Sbjct: 69  LEAALADCQRVFATVGRDVADLALPCWTPRQAA----PQLLAVVQSALVFGREDRGLTNA 124

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  ++ ++  P    +PSLN++QAV +  +E    +  S E   +    P  +  L  F
Sbjct: 125 ELECAHGLVKIPTANTYPSLNLAQAVAVCCYELWLTACDSGETFPQGDAVPFER--LQGF 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            D+LE  L + G+  P     +M   + S+  R      EV LLRG+V  ++
Sbjct: 183 YDHLEQVLLQIGFLYPHTAASRM-AKVRSLLGRAYPTEAEVALLRGMVRQVE 233


>gi|115352170|ref|YP_774009.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282158|gb|ABI87675.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           AMMD]
          Length = 273

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 18/258 (6%)

Query: 1   MTPYAPQLQNSAKGPV---------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-- 49
           + P AP    +A  P           +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 5   LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64

Query: 50  DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
           +     +A + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA 
Sbjct: 65  NVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC- 168
               ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QA+ ++ +E  
Sbjct: 125 QACMQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183

Query: 169 ---MENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
              +E           E  T A   E+     +LE +L    +  P    KK++  L  +
Sbjct: 184 VAFLERGSELHHAQA-EVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRL 241

Query: 226 FIRPELMREEVFLLRGIV 243
           F R  L REEV +LRGI 
Sbjct: 242 FARTGLEREEVNILRGIA 259


>gi|227329515|ref|ZP_03833539.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 241

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 7/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A+     +  T+AR+R     +L P+E  I   +       V ++FGRER GLTNEE
Sbjct: 66  FDQALEGCGLVVGTSARSRTLPWPMLEPRECGIRSAQEAEHAP-VALVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193
           +   +  ++ P NP + SLN++ AV ++ +E      + + + +   +E   P    +L 
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLVD-DLE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  +LE +L + G+ RP  + + M + L  +F R     +E+ +LRGI+S++ K
Sbjct: 184 RFYQHLEQTLLQTGFIRPAHQGQVM-NKLRRLFTRARPESQELNILRGILSSVQK 237


>gi|295097922|emb|CBK87012.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 9/240 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + I   +   V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSISEAEQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGEL 192
           EE+   +  ++   NP + SLN++ AV ++ +E     + + EK V  KE+       +L
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKPVEPKEETAYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE +L   G+ R     + M + L  +F R     +E+ +LRGI++++++ +++
Sbjct: 183 ERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRMFTRARPESQELNILRGILASIEQKNKE 241


>gi|157368927|ref|YP_001476916.1| putative RNA methyltransferase [Serratia proteamaculans 568]
 gi|157320691|gb|ABV39788.1| RNA methyltransferase, TrmH family, group 1 [Serratia
           proteamaculans 568]
          Length = 228

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 1/160 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     T LR+V+  +      AR  +  A  ++D V+ F+ 
Sbjct: 5   IVLVAPARPENVGAAARAMKTMGFTSLRIVDS-EAHLQPAARWVAHGAGDILDGVQTFAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+AD+ F  ATTAR+R  F     P++    L+ER        ++FGRE  GLTNEE
Sbjct: 64  LEQALADVDFTVATTARSRARFHYYCTPQQLLGQLSERSQWVGQAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + L++ +   P+   +PSLN+ QAV++  ++  E   VS+
Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMKVSA 163


>gi|301061729|ref|ZP_07202470.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
           NaphS2]
 gi|300444189|gb|EFK08213.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
           NaphS2]
          Length = 253

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 127/238 (53%), Gaps = 9/238 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV PQ+ ENIG VARAM N  L++L +V+P++       ++++  +  V++ + +  N
Sbjct: 12  VVLVQPQIPENIGSVARAMHNMGLSRLIVVDPKNCDADRMNKTATGTSTKVLEDMDISRN 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+    ++  TTARN     ++  P+  A  L   I  G +V I+FG E  GL+N++
Sbjct: 72  LREALVPFQYLVGTTARNGTLRPALTQPRTLAQKLIP-ISQGNSVAILFGPEDRGLSNDQ 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194
           +   + I++ P    F SLN++QAV+++ +E      ++++   +E   P  A   EL  
Sbjct: 131 LRFCHTILTVPTAS-FSSLNLAQAVVIVCYEL----FLATDGEHREPPVPRLANSFELEG 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             D+L   L + G+  P +  +  L ++     R  L   EV ++RGI   +D +  Q
Sbjct: 186 MYDHLREMLSKIGFLDP-QNPEHWLLNIRRFLARVPLRAREVRIIRGICRQMDWYVSQ 242


>gi|293606592|ref|ZP_06688948.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
           piechaudii ATCC 43553]
 gi|292814977|gb|EFF74102.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
           piechaudii ATCC 43553]
          Length = 252

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 131/254 (51%), Gaps = 20/254 (7%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSN 76
           +V+P    N+G  ARA+     ++L LV P+  D     +A + ++ A  V+++ R++ +
Sbjct: 1   MVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTTQPEAIALASGALDVLENARIYPS 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI---IFGRERWGLT 133
           L+EA+A +   +A TAR R+        ++AA +  E + +G   G+   + G ER GLT
Sbjct: 61  LEEALAPVTMAFALTARVRDLGPPPCDIRQAADLAREHL-AGTAEGVAAVVLGTERAGLT 119

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---------SSEKNVKEQN 184
           N +IAL + I   P NP + SLN++QA+ L  WE     +V         S+ +      
Sbjct: 120 NAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVEQGAALLPASTAQEPSRGA 179

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA+   + +FL + E +L    +  P    KK++  +  +F RP L R+EV ++RG+ +
Sbjct: 180 EPASGEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRPALTRDEVDMMRGVCT 238

Query: 245 TLDKFSRQSSRRNN 258
            +      ++RRN 
Sbjct: 239 AM----LATARRNG 248


>gi|285018692|ref|YP_003376403.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473910|emb|CBA16411.1| putative trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 252

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 10/240 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    L +L LV P      +  R S A A+ V+    V   L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGLARLVLVAPECSVDVDAYRRS-AGAEDVLQQAPVLPTL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+AD   +   TAR+R      L P +AA  L   +     V ++FGRER GLTNEE+
Sbjct: 69  ADALADCRLVLGCTARSRRVALQELLPADAAQRLAATVADAAEVAVVFGRERTGLTNEEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM------ENSIVSSEKNVKEQNTPATKGE 191
              +A +  P +P F SLN++ AV ++ +E        E ++ ++   ++E   PA+  +
Sbjct: 129 QQCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLTQLRSEAAVPAAAPGLRE--APASHAQ 186

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      L  +L++  + +    +  M   L  +F+R  L  +EV LLRG++S   + +R
Sbjct: 187 LEGLFGQLAETLDDIDFHKGRAPESAM-RKLRRLFLRNALSEQEVRLLRGVLSDAQRMAR 245


>gi|212634526|ref|YP_002311051.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
 gi|212556010|gb|ACJ28464.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
          Length = 254

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 12/242 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  P+   P   + + +A A  ++       +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSSLYLAEPKVA-PDGHSVALAAGASDILKHAVTVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++EAIAD   + AT+AR+R     +L P+EA   L E   +G  V I+FGRE  GLTNEE
Sbjct: 66  VEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVESALTGP-VAIVFGRENNGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKEQNTPA 187
           +   +  ++ P NP + SLN++QAV ++ +E     +   +K          V+  N   
Sbjct: 125 LQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQKEFESNKLEGFVEPDNEYP 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              E  +F +++E +L    +    +   +++  L  +F R  + R+E+ +LRGI++++D
Sbjct: 185 FSKERENFFEHMENTLLSTNFIVK-QHPGQVMTKLRRLFSRARIERQEMNILRGILTSVD 243

Query: 248 KF 249
           K 
Sbjct: 244 KI 245


>gi|304398597|ref|ZP_07380469.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
 gi|304353808|gb|EFM18183.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
          Length = 250

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 21/253 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A S +A A  VI   ++  +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGEAKIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAIA    +  T+AR+R+    +L  +E  +   + +  GQ   V ++FGRER GLTN
Sbjct: 66  LDEAIAGCSLVVGTSARSRSLPWPMLDARECGV---KSVEEGQQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + S     +EQ +PA K E   
Sbjct: 123 EELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQS-----QEQASPAPKYEESP 177

Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F  ++E  +   G+ R      +++  L  ++ R    R+E+ +LRG++S+
Sbjct: 178 YPLVDDLERFYQHMEQMMLNSGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSS 236

Query: 246 LDKFSRQSSRRNN 258
            +K   +    +N
Sbjct: 237 FEKRKNEKKEADN 249


>gi|302877882|ref|YP_003846446.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
           capsiferriformans ES-2]
 gi|302580671|gb|ADL54682.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
           capsiferriformans ES-2]
          Length = 253

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG  ARAM    L++L L+NPR  +P  +A + +A AD V+ +  V +++ EA+  +  
Sbjct: 22  NIGAAARAMKAMGLSRLYLINPRH-FPDPQASAMAAGADDVLQNAVVCASIDEALDGVVL 80

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
               TAR R+    V  P+EA   + ++  + Q V ++FG E  GLTNEE + +  +++ 
Sbjct: 81  TVGMTARQRDISNEVSVPREAMPQVVQQAQTLQ-VALLFGTEMSGLTNEEASRAQMLVNI 139

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGELLSFLDYLEISLEE 205
           P NP F SLN++ AV ++ +E    S+ +      EQ+  PA   ++  F+ +LE +L E
Sbjct: 140 PANPEFSSLNLAAAVQVISYEL---SVAAQNYQPVEQSLQPAAHQQVEGFMSHLEKTLHE 196

Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            G+F   +   +M+  L  ++ R     +E+ +LRGI+S   ++
Sbjct: 197 IGFFT-TQNPARMMQRLRRLYARARPEADEINILRGILSVTTEY 239


>gi|78356021|ref|YP_387470.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218426|gb|ABB37775.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 253

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 3/243 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+  ENIGMVARA  N  + +L +V P    P +    ++     V++SVR    
Sbjct: 8   VVLVEPRFPENIGMVARACANMGVNELVVVAPERWNPEKSVPLATPKGVPVLESVRHEDT 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+A    +  TTAR     + +L+P+ AA V+ + + +G  V I+FGRE  GLTNEE
Sbjct: 68  LAAALAPYTLVLGTTARTGGWRRQILSPETAAPVVQQEVAAGGRVAIVFGREDRGLTNEE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGELLSF 195
             + + +++ P +    SLN++QAVL++++EC + S      K+    +   T  E    
Sbjct: 128 TEVCSRLVTIPTSEA-SSLNLAQAVLILLYECFKLSDARPFHKSAGALSRVVTHEEQEIL 186

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
              L+ +L +  Y R       ML  +     +  L R E  +L GI   + + +R ++ 
Sbjct: 187 FAALQDTLLDIDYLREDNPDYFML-PVRRFMQKASLRRHEFDMLMGICRQVRRLARVAAE 245

Query: 256 RNN 258
           + +
Sbjct: 246 KED 248


>gi|289826152|ref|ZP_06545264.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 234

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF 
Sbjct: 4   IIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFH 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+
Sbjct: 63  TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|50122161|ref|YP_051328.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644316|sp|Q6D257|TRMJ_ERWCT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|49612687|emb|CAG76137.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 241

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 7/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATLVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+   + +  T+AR+R     +L P+E   V + +      V ++FGRER GLTN+E
Sbjct: 66  LDQALEGCNLVVGTSARSRTLPWPMLEPRECG-VRSAQEAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193
           +   +  ++ P NP + SLN++ AV ++ +E      + + + +   +E   P    +L 
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLVD-DLE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  +LE +L + G+ RP  + + M + L  +F R     +E+ +LRGI+S++ K
Sbjct: 184 RFYQHLEQTLLQTGFIRPAHQGQVM-NKLRRLFTRARPEAQELNILRGILSSVQK 237


>gi|302840453|ref|XP_002951782.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f.
           nagariensis]
 gi|300263030|gb|EFJ47233.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f.
           nagariensis]
          Length = 463

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 40/228 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG------------------------ 51
           VI+LV+P+ GENIG  AR M NF L +LRLV P  G                        
Sbjct: 152 VIVLVEPKRGENIGAAARGMKNFGLRELRLVRPMAGAGGGGGGGGGGGGGGGGDRAVDAG 211

Query: 52  -------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP 104
                  WP EKAR+ +A A  V+DS +V+  L  A+ADL ++YA + R R   K  LA 
Sbjct: 212 GGSGGWYWPDEKARAVAARAVDVVDSAKVYDTLDAALADLQYVYAASGRPRAQDK--LA- 268

Query: 105 KEAAI---VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           K+  +   V +    +G  +G++FGRE  GL NEE+  +NAI++   +P F SLN+ QAV
Sbjct: 269 KDVVLLRQVQDSLPPAGTRIGVMFGREDNGLYNEELVRANAILTIDTDPSFYSLNLGQAV 328

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYF 209
           L++ +E            +  +   A++ E+   LD L  +L+ R +F
Sbjct: 329 LIVCYELFR---APRRPGLGAKRDRASRREVEGMLDRLFRALDARAFF 373


>gi|161524370|ref|YP_001579382.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|160341799|gb|ABX14885.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans ATCC 17616]
          Length = 289

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V S
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 105

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA++ +H+  A TAR R      LAP+ AA     ++ SG ++ ++FG ER GL NE
Sbjct: 106 TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLANE 164

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E +   +++   +  T A   E
Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQSDE 224

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 225 IERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 275


>gi|189350875|ref|YP_001946503.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189334897|dbj|BAG43967.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
          Length = 276

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V S
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA++ +H+  A TAR R      LAP+ AA     ++ SG ++ ++FG ER GL NE
Sbjct: 93  TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLANE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E +   +++   +  T A   E
Sbjct: 152 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQSDE 211

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 212 IERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 262


>gi|300715247|ref|YP_003740050.1| RNA methyltransferase [Erwinia billingiae Eb661]
 gi|299061083|emb|CAX58190.1| RNA methyltransferase [Erwinia billingiae Eb661]
          Length = 233

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 9/191 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P+  EN+G  ARAM      +LR+VN +       AR  +  A  ++D+   + +
Sbjct: 5   LILVSPRRPENVGAAARAMKTMGFDELRIVNSQ-AHLEPAARWVAHGAGEILDNATHWDS 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+AD+ F  ATTAR+R  F+    P++   +L E+    Q+  ++FGRE  GLTNEE
Sbjct: 64  LDAALADIDFSIATTARSRAKFRYYATPQQVQSLLEEKQQWVQSAALVFGREDTGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF- 195
           +AL + +   P+   +PSLN+ QAV++    C + S +     +KE   PA   +L +  
Sbjct: 124 LALVDVLTGIPMAADYPSLNLGQAVMVY---CYQLSALRQVSAIKE--APADAQQLDALR 178

Query: 196 --LDYLEISLE 204
             LD L +SLE
Sbjct: 179 QRLDRLLVSLE 189


>gi|291616207|ref|YP_003518949.1| LasT [Pantoea ananatis LMG 20103]
 gi|291151237|gb|ADD75821.1| LasT [Pantoea ananatis LMG 20103]
          Length = 247

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P   ENIG  ARAM      ++R+V   D W    AR  +  A  ++D ++ F  
Sbjct: 20  LILVSPARAENIGAAARAMKTMGFNEMRIV-ASDAWQDPAARRVAHGAGDILDRIKTFDT 78

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+ F  ATTAR+R  F+    P++    L E+     ++ ++FGRE  GLTNEE
Sbjct: 79  LAEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEE 138

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   + +   P+   +PSLN+ QAV++  ++
Sbjct: 139 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQ 169


>gi|271502114|ref|YP_003335140.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345669|gb|ACZ78434.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech586]
          Length = 233

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 6/176 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM      +LR+V+ R       AR  +  +  ++D+V VF  
Sbjct: 5   IILVAPARPENVGAAARAMKTMGFGRLRIVDSR-AHLEPAARWVAHGSGDILDAVDVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F     P +   VL E+     +  ++FGRE  GLTNEE
Sbjct: 64  LADALADIDFTVATTARSRARFHYYCEPAQLLAVLQEKQQWISSAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           +AL++ +   P+   +PSLN+ QAV++  ++     + S  +    +  PA  G+L
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQ-----LASLMQVAVAEPMPAESGQL 174


>gi|119898311|ref|YP_933524.1| RNA methyltransferase [Azoarcus sp. BH72]
 gi|119670724|emb|CAL94637.1| RNA methyltransferase, TrmH family, group 1 [Azoarcus sp. BH72]
          Length = 242

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG  ARAM    L+QL LV P + +P   A + ++ AD ++ + RV  +L EA+A    
Sbjct: 22  NIGAAARAMKTMGLSQLWLVAP-ESFPDPVADARASGADDLLRNARVVGSLAEALAGTVL 80

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
             A TAR R         + AA+ L  R     +V ++FG E  GL+NE++ L    +S 
Sbjct: 81  AAAVTARRRELALPRRDARAAAVEL-LRFAEQGDVALVFGNETSGLSNEDVLLCGMPVSI 139

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206
           P NP F SLN+  AV L+ +E M  + +  + +       AT  E+  FL +LE ++ E 
Sbjct: 140 PANPAFSSLNLGAAVQLLCYE-MRMAALQPQLDADPAPRLATHDEVEGFLQHLEQAVTES 198

Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           G+  P    +++L  L  +F R  L +EEV +LRG++S+  +
Sbjct: 199 GFHEP-SNPRRLLPRLRRLFGRVRLEKEEVGILRGMLSSFQR 239


>gi|310764793|gb|ADP09743.1| tRNA/rRNA methyltransferase [Erwinia sp. Ejp617]
          Length = 241

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLV-KPDSQAIALAAGASDVIGEAKIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAI+    +  T+AR+R+    +L P++  +   + +  GQ   V ++FGRER GLTN
Sbjct: 66  LDEAISGCSLVVGTSARSRSLPWPMLDPRQCGL---KSVEEGQQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTP-ATKGEL 192
           +E+   +  ++   NP + SLN++ AV ++ +E     + S E    +   TP     +L
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQPDETPYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  ++E  + + G+ R     + M   +  +F R    R+E+ +LRG++S+L+K
Sbjct: 183 ERFYQHMEKIMTDSGFIRAASPGQVM-SKMRRLFTRARPERDELNILRGMLSSLEK 237


>gi|324112605|gb|EGC06582.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325495934|gb|EGC93793.1| RNA methyltransferase [Escherichia fergusonii ECD227]
          Length = 228

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 105/189 (55%), Gaps = 5/189 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM      ++R+V+ +          +  + D +ID++ VFS+
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRWVAHGSGD-IIDNIAVFSS 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  F     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193
           +AL++ +   P+   +PSLN+ QAV++  ++    M+  I + + + + Q T A +  ++
Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLT-ALRTRVM 182

Query: 194 SFLDYLEIS 202
             L  L+++
Sbjct: 183 RLLSTLDVA 191


>gi|317154690|ref|YP_004122738.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
 gi|316944941|gb|ADU63992.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 248

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 98/158 (62%), Gaps = 2/158 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75
           +IL  P+  ENIG  ARA  N  +++L +V P +    +KAR  ++A+A  ++DS RV  
Sbjct: 7   VILFRPKYPENIGSAARACLNMGVSRLIIVAPYN-LDMDKARPLATAHARHILDSARVVE 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+     +Y TTAR     K +++P   A V++ER+ SG  V I+FG E  GLTN+
Sbjct: 66  TLAEAVEGFTSVYGTTARTGGWRKGIMSPTTLAGVVDERLRSGGRVAILFGPEDTGLTND 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E ++ + +++ P +    SLN++QAV+++++EC + ++
Sbjct: 126 ETSVCSGLMTIPTSREGTSLNLAQAVVVVLYECFKRAL 163


>gi|204927155|ref|ZP_03218357.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323820|gb|EDZ09015.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 228

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 3/192 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S     E    A +   L 
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADELQLQALRARFLR 183

Query: 195 FLDYLEISLEER 206
            L  LE + + +
Sbjct: 184 LLTTLEAADDHK 195


>gi|163749697|ref|ZP_02156943.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
           KT99]
 gi|161330510|gb|EDQ01468.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
           KT99]
          Length = 254

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 12/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++    +  +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-QPDGHSIALAAGASDILKHAVIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EAIAD   + AT+AR+R     +L P+EA   L      G  V I+FGRE  GLTNEE
Sbjct: 66  VAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALEGP-VAIVFGRENNGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKN-----VKEQNTPA 187
           +   +  ++ P NP + SLN++QAV ++ +E     +E+     +K      V+E+    
Sbjct: 125 LQKCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLEHEKRELDKGRSVDYVEEKIEYP 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              E  +F ++LE +L   G+    +   +++  L  +F R  L R+E+ +LRG+++++D
Sbjct: 185 FAKERENFFEHLESTLLGTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGMLTSID 243

Query: 248 K 248
           K
Sbjct: 244 K 244


>gi|291614716|ref|YP_003524873.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584828|gb|ADE12486.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
           lithotrophicus ES-1]
          Length = 254

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 5/230 (2%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG  ARAM    L  L L+NPR  +P  +A + +A AD V+ S  V S++ EA+  + F
Sbjct: 22  NIGAAARAMKTMGLQHLYLINPR-YFPDAQATAMAAGADDVLQSAVVCSSIDEALQGVVF 80

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
             A TAR R+    V AP+EA   + +   S   V ++FG E  GLTNEE+  +   ++ 
Sbjct: 81  TVAMTARLRDISIEVKAPREAMPEVLQHAASNP-VALLFGTEMSGLTNEEMGKAQLGVNI 139

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206
           P NP F SLNI+ AV +M +E   N    S      Q  PAT   +     +LE +L E 
Sbjct: 140 PANPDFSSLNIAAAVQVMAYEL--NVAAQSFTPAIPQIEPATHERVEGLYAHLEKTLFEI 197

Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
           G+F   +   +++  L  ++ R  L  EE+ +LRG+++   +++ +  +R
Sbjct: 198 GFFT-TQNPARLMQRLRRLYSRTRLEDEEINILRGMLTVATEYNARLRKR 246


>gi|167623500|ref|YP_001673794.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167353522|gb|ABZ76135.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           halifaxensis HAW-EB4]
          Length = 251

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 130/248 (52%), Gaps = 11/248 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  P+   P   + + +A A  ++       +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKV-EPDGHSIALAAGASDILKHAITVGS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  GLTNEE
Sbjct: 66  VEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVGSALTGP-VAIVFGRENNGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-------EQNTPATK 189
           +   +  ++ P NP + SLN++QAV ++ +E     +   E  V+       ++  P+++
Sbjct: 125 LQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVESGVEPAPVDENDEAYPSSR 184

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E  +F ++LE +L    +        +++  L  +F R  + R+E+ +LRGI++++DK 
Sbjct: 185 -ERENFFEHLENTLLSTNFIVK-NHPGQIMTKLRRLFSRTRIERQEMNILRGILTSIDKV 242

Query: 250 SRQSSRRN 257
             ++  ++
Sbjct: 243 VDKTETKD 250


>gi|327396446|dbj|BAK13868.1| tRNA/rRNA methyltransferase LasT [Pantoea ananatis AJ13355]
          Length = 234

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P   ENIG  ARAM      ++R+V   D W    AR  +  A  ++D ++ F  
Sbjct: 7   LILVSPARAENIGAAARAMKTMGFNEMRIV-ASDAWQDPAARRLAHGAGDILDRIKTFDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+ F  ATTAR+R  F+    P++    L E+     ++ ++FGRE  GLTNEE
Sbjct: 66  LAEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   + +   P+   +PSLN+ QAV++  ++
Sbjct: 126 LEQVDLLTGIPMANDYPSLNLGQAVMVYCYQ 156


>gi|332141980|ref|YP_004427718.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552002|gb|AEA98720.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 261

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 4/238 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     NIG  ARAM    L+ L LV+P +  P  +A + +A A  V+ + ++   
Sbjct: 7   IILVNTSHTGNIGSTARAMKTMGLSSLYLVDPVN-EPDGQASALAAGAGDVLANAKIVGT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+ D   +  T+AR+R +   +L P++    L + +     V ++FGRE  GLTNEE
Sbjct: 66  LEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  +  P NP + SLN++ AV  + +E +  + ++ E     + T     +L  F 
Sbjct: 125 LQQCHFHMCIPANPEYSSLNLAAAVQTLCYE-IRMAFLNRETYPSVEETYPLNEDLERFY 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
            +LE +LE   + R       ++  L  +F R     +E+ +LRGI++++DK  + +S
Sbjct: 184 AHLETTLEGTSFIRK-SHPGVVMTKLRRLFNRARPESQELNILRGILASIDKSVKSAS 240


>gi|82546754|ref|YP_410701.1| RNA methyltransferase [Shigella boydii Sb227]
 gi|187733363|ref|YP_001883067.1| putative RNA methyltransferase [Shigella boydii CDC 3083-94]
 gi|81248165|gb|ABB68873.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187430355|gb|ACD09629.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|320176856|gb|EFW51884.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           CDC 74-1112]
 gi|320183575|gb|EFW58420.1| RNA methyltransferase, TrmH family, group 1 [Shigella flexneri CDC
           796-83]
 gi|332090451|gb|EGI95549.1| hypothetical protein SB359474_4016 [Shigella boydii 3594-74]
          Length = 228

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E  ++L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|291086095|ref|ZP_06354807.2| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
           ATCC 29220]
 gi|291069358|gb|EFE07467.1| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
           ATCC 29220]
          Length = 242

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 5/189 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     TQLR+V+            +  + D +ID++ VF  
Sbjct: 19  IILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGD-IIDNINVFPT 77

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  F     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 78  LAEALHDVDFTVATTARSRAKFHYYATPVELVPLLQEKSTWMDHAALVFGREDSGLTNEE 137

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGELL 193
           +AL++ +    +   +PSLN+ QAV++  ++ +   I    KN+    E    A +  +L
Sbjct: 138 LALADVLTGVTMVADYPSLNLGQAVMVYCYQ-LAGLIQQPAKNIDVTDELQLQALRARVL 196

Query: 194 SFLDYLEIS 202
             L  L +S
Sbjct: 197 RLLATLNVS 205


>gi|110808190|ref|YP_691710.1| putative RNA methyltransferase [Shigella flexneri 5 str. 8401]
 gi|110617738|gb|ABF06405.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 228

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E  ++L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|109897560|ref|YP_660815.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109699841|gb|ABG39761.1| RNA methyltransferase, TrmH family, group 1 [Pseudoalteromonas
           atlantica T6c]
          Length = 241

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 9/241 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+QL LV+P    P  K+ + +A A  V+ + ++ S 
Sbjct: 7   IVLVNTSHTGNIGSTARAMKTMGLSQLVLVDPVS-PPDGKSSALAAGAGDVLANAKIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133
           + EA+AD   +  T+AR+R     +L P+E      E++ S      V ++FGRE  GL+
Sbjct: 66  VAEAVADCGLVVGTSARSRTLSWPMLEPRECG----EKLVSEVPKYPVALVFGRENNGLS 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEE+   +  +  P NP + SLN++ AV  + +E     +  + +    Q       +L 
Sbjct: 122 NEELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRREANVQEEYPLADDLE 181

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
            F  +LE +L +  +  P +    ++  L  +F R     +E+ +LRGI+++++K S+ +
Sbjct: 182 GFYSHLEQTLHKTNFIIP-QHPGMVMTKLRRLFNRARPETQELNILRGILASIEKSSKDN 240

Query: 254 S 254
           +
Sbjct: 241 T 241


>gi|226953026|ref|ZP_03823490.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226836233|gb|EEH68616.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 278

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 21/269 (7%)

Query: 9   QNSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           QN+   P+    I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A
Sbjct: 6   QNNMTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGA 64

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +I+ + +   L++AI D H ++ T+AR+R     +L  + AA    +     QN+ I+
Sbjct: 65  QDLIEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALQAASQQQNIAIV 124

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--------VSS 176
           FGRE  GLTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E    ++         S+
Sbjct: 125 FGREDRGLTNEELALANYHLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTSN 184

Query: 177 EK-NVKEQNTP------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
           E+  +K+Q T        T+ ++  F  + E  L E   F      + +   L  +F R 
Sbjct: 185 EQMQLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIE-FLDPNNPRLLPLRLRRLFGRI 243

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
           +L R E  LLRG+ S +   +  S +++ 
Sbjct: 244 QLDRMEYHLLRGVFSRVQSLANGSWKKSQ 272


>gi|198282955|ref|YP_002219276.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666933|ref|YP_002425158.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247476|gb|ACH83069.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519146|gb|ACK79732.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 256

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 137/257 (53%), Gaps = 11/257 (4%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  S +G  I+LV+P    NIG  ARAM    L  L LV+PR  +P  +A + ++ A+ +
Sbjct: 2   IGTSLQGLRIVLVEPSHPGNIGAAARAMKVMGLRHLVLVSPR-FFPDPEATALASGAEDI 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++S +V +NL  A+   H +Y T+AR R         +EAA  +   + +G +  ++FGR
Sbjct: 61  LESAQVCTNLDTALQGCHKVYGTSARGRRIQWPASNAREAAGEILADLDTG-DCALLFGR 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS------EKNVK 181
           ER GLTN E+     ++  P    + SLN+ QAV ++ +E    ++ +        ++V 
Sbjct: 120 ERTGLTNAEMDRCQVLVHIPTADEYHSLNLGQAVQVLAYELHMAALTAQPAQDVPAEDVP 179

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
           EQ  PA   ++  F  +L+  L   G+ + + +  +M+  L  +F R    + EV +LRG
Sbjct: 180 EQ--PAPIEDMEGFYGHLQHVLRRSGFLQEI-RATRMMRRLRRLFDRARPSQNEVNILRG 236

Query: 242 IVSTLDKFSRQSSRRNN 258
           I++ +++++ +  R++ 
Sbjct: 237 ILTEIERWASKVDRKDQ 253


>gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
 gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
          Length = 241

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL       NIG  ARAM    L+ L L+NP+  +P ++A   + +A  +++ +RV + 
Sbjct: 12  IILSHTSHPGNIGAAARAMKTMGLSSLYLINPKT-FPDKEADVRAVSARDILEKIRVCTT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ +     A TAR R+    V   ++ A  L  R      V ++FG E  GLT  E
Sbjct: 71  LDEALDNTVLTAAMTARPRDLSHDVFNARQGAREL-LRYARQHPVALLFGTETSGLTTAE 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           ++    II  P NP F SLN++ AV +M +E +  +++ +++ V     PA+  EL    
Sbjct: 130 VSKCQMIIHIPANPEFTSLNLASAVQVMTYE-LRMALIENDEPVPLAGFPASFNELELLY 188

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE  +    +  P +K + ++  +  +F R  L +EEV +LRGI++ L K
Sbjct: 189 AHLEQVMIASDFLDP-QKPRLLMQRIRRLFGRARLEKEEVRILRGILTALGK 239


>gi|332083398|gb|EGI88629.1| hypothetical protein SB521682_5281 [Shigella boydii 5216-82]
          Length = 228

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D VID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-VIDNIKVFPA 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSLWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|255020949|ref|ZP_05293005.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969740|gb|EET27246.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
           51756]
          Length = 263

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 14/252 (5%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P AP L+       I+LV+     NIG  ARAM    L +L LV P   +P  +A + +
Sbjct: 15  APLAPDLR-------IVLVETSHPGNIGSAARAMKVMGLERLVLVRPHR-FPDAQATALA 66

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A+ +++   V+ +L  A+AD   +Y TTAR+R+     L  + AA  +   + +   V
Sbjct: 67  SGAEDLLERAEVYDDLAAALADCRRVYGTTARDRHIAWPQLTARPAAAEIVA-LGASAPV 125

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            I+FG ER GL+N E+ L   +I  P    + SLN++QAV ++ +E +     +      
Sbjct: 126 AILFGNERVGLSNRELDLCQCLIQIPTAEAYRSLNLAQAVQILAYELLLAQRETRHPAPS 185

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLL 239
              T A +  +  F  +L   L + G+ +   ++  M+  L  +F   RP+L   EV++L
Sbjct: 186 VLETAAPRAAMEGFYGHLAQVLRQAGFLQ-APRETHMMRRLRRLFDRARPDL--NEVYIL 242

Query: 240 RGIVSTLDKFSR 251
           RGI++ ++++++
Sbjct: 243 RGILTEVERWAQ 254


>gi|268593202|ref|ZP_06127423.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rettgeri DSM 1131]
 gi|291311250|gb|EFE51703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rettgeri DSM 1131]
          Length = 243

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 9/241 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    L+ L LVNP    P   + + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLV-EPDSHSIALSAGASDVIGNATIVKT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     +  T+AR+R     ++ P+E  +   E+      V I+FGRER GLTNEE
Sbjct: 66  LDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQ-SKESPVAIVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-----KEQNTPATKGE 191
           +      +  P NP + SLN++ AV L+ +E     +  +EKN       E   P ++ +
Sbjct: 125 LQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLSMNEKNTVISADDEVEYPPSE-D 183

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +  F  +LE  L E G+ R       +++ L  +F R  +  +E+ +LRGI+++++K+++
Sbjct: 184 VERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHIETQELHILRGILTSMEKWAK 242

Query: 252 Q 252
           +
Sbjct: 243 K 243


>gi|294637706|ref|ZP_06715983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
           tarda ATCC 23685]
 gi|291089136|gb|EFE21697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
           tarda ATCC 23685]
          Length = 245

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 7/236 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-RPDSQAIALAAGASDVIGNATIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             EAIA    +  T+AR+R+    +L P+E      +       V I+FGRER GLTN+E
Sbjct: 66  FDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQRAAQE-SEHAPVAIVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGELL 193
           +   +  +  P NP + SLN++ AV ++ +E     +    +    V E+  P    +L 
Sbjct: 125 LQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKYPPVGEEAYPLVD-DLE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++DK+
Sbjct: 184 RFYSHLEQTLHHTGFIRE-KNPGQVMNRLRRLFTRARPEAQELNILRGILASIDKY 238


>gi|194432193|ref|ZP_03064482.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|194419722|gb|EDX35802.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|332089667|gb|EGI94768.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 155-74]
          Length = 245

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNIGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|218701042|ref|YP_002408671.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218371028|emb|CAR18855.1| putative methyltransferase [Escherichia coli IAI39]
          Length = 246

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLRATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|261820557|ref|YP_003258663.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
 gi|261604570|gb|ACX87056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
          Length = 241

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+     +  T+AR+R     +L P+E   V + +      V ++FGRER GLTN+E
Sbjct: 66  LDQALEGCSLVVGTSARSRTLPWPMLDPRECG-VRSAQEAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194
           +   +  ++ P NP + SLN++ AV ++ +E     +  +   K   E++      +L  
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQVGKPEHEESPYPLVDDLER 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE +L + G+ RP  + + M + L  +F R     +E+ +LRGI+S++ K
Sbjct: 185 FYQHLEETLLQTGFIRPAHQGQVM-NKLRRLFTRARPEAQELNILRGILSSVQK 237


>gi|205355311|ref|YP_002229112.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859721|ref|YP_002246372.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205275092|emb|CAR40184.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206711524|emb|CAR35909.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326630478|gb|EGE36821.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 228

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|213417006|ref|ZP_03350150.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 234

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF 
Sbjct: 4   TIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFH 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+
Sbjct: 63  TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|237705043|ref|ZP_04535524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           sp. 3_2_53FAA]
 gi|226901409|gb|EEH87668.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           sp. 3_2_53FAA]
          Length = 246

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHCHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|16763388|ref|NP_459005.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144866|ref|NP_808208.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213163203|ref|ZP_03348913.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427599|ref|ZP_03360349.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213620574|ref|ZP_03373357.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213649674|ref|ZP_03379727.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865406|ref|ZP_03387525.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289806550|ref|ZP_06537179.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|25304298|pir||AH1076 probable RNA methyltransferase lasT [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505697|emb|CAD03431.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140505|gb|AAO72068.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 228

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF 
Sbjct: 4   TIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFH 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+
Sbjct: 63  TLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTND 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|167989847|ref|ZP_02570947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234736|ref|ZP_02659794.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168262343|ref|ZP_02684316.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464476|ref|ZP_02698379.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168822143|ref|ZP_02834143.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197262963|ref|ZP_03163037.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200386516|ref|ZP_03213128.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|195632601|gb|EDX51055.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197241218|gb|EDY23838.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197292006|gb|EDY31356.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199603614|gb|EDZ02159.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205331570|gb|EDZ18334.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205341380|gb|EDZ28144.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205348701|gb|EDZ35332.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261249679|emb|CBG27551.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996964|gb|ACY91849.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301161078|emb|CBW20616.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320089029|emb|CBY98785.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222432|gb|EFX47504.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132941|gb|ADX20371.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991406|gb|AEF10389.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 228

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|191173157|ref|ZP_03034689.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|218692792|ref|YP_002401004.1| putative RNA methyltransferase [Escherichia coli ED1a]
 gi|227885105|ref|ZP_04002910.1| RNA methyltransferase [Escherichia coli 83972]
 gi|229106359|ref|NP_757336.2| putative RNA methyltransferase [Escherichia coli CFT073]
 gi|300980881|ref|ZP_07175230.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|300983987|ref|ZP_07176838.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|301048375|ref|ZP_07195404.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|190906542|gb|EDV66149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|218430356|emb|CAR11226.1| rRNA methyltransferase [Escherichia coli ED1a]
 gi|227837934|gb|EEJ48400.1| RNA methyltransferase [Escherichia coli 83972]
 gi|300299792|gb|EFJ56177.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|300306821|gb|EFJ61341.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|300409123|gb|EFJ92661.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|307556637|gb|ADN49412.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|315293342|gb|EFU52694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           153-1]
 gi|320195357|gb|EFW69985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           WV_060327]
 gi|324012374|gb|EGB81593.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           60-1]
          Length = 228

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVFKT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|15602181|ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720552|gb|AAK02400.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 238

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 13/237 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L QL LV P+     E A + SA A+ V+   ++ ++
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPL-DEHAIALSAGAEDVLKQAKIVAS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
             EA+AD   +  T+AR R+   S++ P+E         ++ Q  V I+FGRER GLTNE
Sbjct: 66  FDEAVADCALVIGTSARLRHLQNSLIEPRECGT--RAIAYAKQAPVAIVFGRERIGLTNE 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191
           E+      ++ P NP + SLN++ AV L+ +E +  + +S +   +      NT  T  E
Sbjct: 124 ELLKCRYHLTIPANPDYSSLNLAMAVQLICYE-LRLAFLSQQAMTESLSTIDNTYPTHTE 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +  F  + E      G+     + + ++  L  ++ R +L + E+ +LRG+++ ++K
Sbjct: 183 IEHFFQHTERLYTALGFI----QNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEK 235


>gi|56416369|ref|YP_153444.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365290|ref|YP_002144927.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130626|gb|AAV80132.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096767|emb|CAR62391.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 228

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|26111729|gb|AAN83910.1|AE016772_88 Hypothetical tRNA/rRNA methyltransferase lasT [Escherichia coli
           CFT073]
          Length = 235

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF  
Sbjct: 12  IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVFKT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 71  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 131 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 161


>gi|117618072|ref|YP_856281.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559479|gb|ABK36427.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 241

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 130/239 (54%), Gaps = 16/239 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    L+Q+ LV+P+   P + A + +A A  ++ + R+ S 
Sbjct: 7   IVLVNTSHTGNMGSAARAMKTMGLSQMVLVDPQ-AQPDDNAYALAAGASDLLANARIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAIAD   +  T+AR+R     +L P+EA   L   +  G    V ++FGRER GLTN
Sbjct: 66  LDEAIADCGLVIGTSARSRTLSWPMLDPREAGEKL---VTEGMQHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA---TKGE 191
           +E+   +  ++ P NP + SLN++ AV  + +E   + +   ++ V E +      +  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQTLCYEVRMHWL--QQEQVGETDMAVDYPSAEQ 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L + G+    +   +++  L  +F   RPE +  E+ +LRGI++++ K
Sbjct: 181 LEGFYQHLEQTLLKTGFIAD-DHPGQVMSKLRRLFNRARPEAV--ELNILRGILTSVQK 236


>gi|329905921|ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547412|gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 251

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 15/237 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+     NIG  ARAM     T L LVNPR  D    ++A + ++ A  V+ + R+  
Sbjct: 17  VLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVAFASGAQDVLANARIVG 76

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLT 133
           +++EA+ D ++  A +AR R     V  P++ A  +  N  +     V ++ G ER+GL 
Sbjct: 77  SIEEALVDCNYAAAVSARLREFSPPVNGPRKFADEVAGNAAL----RVALVLGNERFGLP 132

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATK 189
           NE +   N +I+ P NP + SLN+ QAV ++ +EC    + +  +++E  V      A+ 
Sbjct: 133 NEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECRMAALGDDAIATE--VGFHGDAASL 190

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            ++     +LE +L    + +P +  KK++  L  +F R  L  EEV +LRGI   +
Sbjct: 191 TQVEGMYQHLEQALVAIDFLKP-DSPKKLMPRLKRLFARTGLETEEVNILRGIAKQI 246


>gi|320450586|ref|YP_004202682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
           scotoductus SA-01]
 gi|320150755|gb|ADW22133.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
           scotoductus SA-01]
          Length = 252

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 124/237 (52%), Gaps = 22/237 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVIDSVRV 73
           I+LV+PQ   N+G VARAM NF L++L LVNP  R G P + +A   + +A+ V+D    
Sbjct: 7   IVLVEPQEPMNVGAVARAMRNFGLSRLYLVNPSPRVGPPWAREAYWLAVHAEEVLDRAVA 66

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132
             +L EA+  + F+ ATT R R  +    AP   A  +   + S +  V ++FGRE +GL
Sbjct: 67  VESLGEALEGVSFVVATTGRPRELYP---APVVTAREVPAHVLSVKGEVALVFGRETFGL 123

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-----CMENSIVSSEKNVKEQNTPA 187
           TNEE+ L++ I + P  P  PSLN++QAV++  +E       + S VS E+     +  A
Sbjct: 124 TNEELDLAHLIGTIPTAPEQPSLNLAQAVVVFAYELYQAWLQQGSTVSQEELA---DVAA 180

Query: 188 TKGELLSFLDY-LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
            +G       Y LEI       F    +    +  L  IF +  L   EV LLRG++
Sbjct: 181 LEGFFADLGRYVLEIG------FTDEHRHPYAMRRLRRIFHKARLSPGEVQLLRGLL 231


>gi|166711820|ref|ZP_02243027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 254

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 8/247 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSEAPIFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASQPAEVAFVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+  +
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGESEPAPAAATGLRDGPASHAQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + + 
Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247

Query: 252 QSSRRNN 258
            + +  N
Sbjct: 248 LAKQAEN 254


>gi|238796769|ref|ZP_04640275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           mollaretii ATCC 43969]
 gi|238719500|gb|EEQ11310.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           mollaretii ATCC 43969]
          Length = 257

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 7/243 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTNEE
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192
           +   +  ++ P NP + SLN++ AV ++ +E      +   ++   ++E+  P     +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPVIEEEEAPYPLVDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K  + 
Sbjct: 185 ERFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQGKY 243

Query: 253 SSR 255
             R
Sbjct: 244 PQR 246


>gi|242240171|ref|YP_002988352.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
 gi|242132228|gb|ACS86530.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
          Length = 244

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    L++L LVNP    P  +A S +A A  VI    +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSRLFLVNPLVK-PDSQAISLAAGASDVISHATIVET 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+     +  T+AR+R     +L P+E  ++  E       V I+FGRER GLTN+E
Sbjct: 66  LDQALEGCSLVIGTSARSRTLQWPMLEPRECGVLSAEEARHAP-VAIVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGEL 192
           +   +  ++ P NP + SLN++ AV L+ +E     ++N  + +E+   E++      +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQLLSYEIRVAWLDN--LKAEEPAYEESPYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             F  +LE +L + G+ R    + +++  L  +F R     +E+ +LRGI+S++
Sbjct: 183 ERFYQHLEQTLLQTGFIRH-SHQGQVMHKLRRLFTRARPESQELNILRGILSSI 235


>gi|253689402|ref|YP_003018592.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755980|gb|ACT14056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 241

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 7/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLV-KPDSQAIALAAGASDVIGNATIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A+     +  T+AR+R     +L P+E   V + +      V ++FGRER GLTN+E
Sbjct: 66  FDQALEGCGLVVGTSARSRTLPWPMLEPRECG-VRSAQEAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGELL 193
           +   +  ++ P NP + SLN++ AV ++ +E      + + + +   +E   P    +L 
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLVD-DLE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  +LE +L + G+ RP  + + M + L  +F R     +E+ +LRGI+S++ K
Sbjct: 184 RFYQHLEQTLLQTGFIRPAHQGQVM-NKLRRLFTRARPEAQELNILRGILSSVQK 237


>gi|331681388|ref|ZP_08382025.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           H299]
 gi|331081609|gb|EGI52770.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           H299]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVFKT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|301155740|emb|CBW15208.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 239

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 130/238 (54%), Gaps = 18/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     NIG  ARAM    L+ L LV+P+     E++ + +A AD ++ + ++  +
Sbjct: 7   IILVETSHSGNIGSAARAMKTMGLSNLYLVSPKS--VDEQSIALAAGADDLVRNAQIVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
            ++AI D   +  T+AR R+   +++ P+E A    E+   + GQ V I+FGRER GLTN
Sbjct: 65  FEQAIEDCSLVIGTSARLRHLQSTLIEPRECA----EKACAYQGQ-VAIVFGRERVGLTN 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKG 190
           EE+   +  ++ P NP + SLN++ AV L+ +E M  + ++ E+        +N   T  
Sbjct: 120 EELLKCHYHLNIPANPEYSSLNLAMAVQLVSYE-MRMAFLAKERTESTLSTIENIYPTAQ 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           E+  F  + E   +  G+     + + ++  L  ++ R  L + E+ +LRG++S ++K
Sbjct: 179 EMEYFFAHTEQVYQSLGFI----QNQGVIQKLRRLYNRSSLEKNELNILRGMLSAVEK 232


>gi|74314837|ref|YP_313256.1| putative RNA methyltransferase [Shigella sonnei Ss046]
 gi|194434185|ref|ZP_03066453.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|256025322|ref|ZP_05439187.1| putative RNA methyltransferase [Escherichia sp. 4_1_40B]
 gi|301646924|ref|ZP_07246769.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|307136603|ref|ZP_07495959.1| putative RNA methyltransferase [Escherichia coli H736]
 gi|331640448|ref|ZP_08341596.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
 gi|73858314|gb|AAZ91021.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|194417622|gb|EDX33723.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|301074912|gb|EFK89718.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|323166212|gb|EFZ51990.1| hypothetical protein SS53G_3575 [Shigella sonnei 53G]
 gi|331040194|gb|EGI12401.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
 gi|332097902|gb|EGJ02875.1| hypothetical protein SD15574_0046 [Shigella dysenteriae 155-74]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D VID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-VIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|331645102|ref|ZP_08346213.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           M605]
 gi|330909848|gb|EGH38358.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli AA86]
 gi|331045859|gb|EGI17978.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           M605]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D VID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-VIDNIKVFKT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|221214723|ref|ZP_03587692.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD1]
 gi|221165262|gb|EED97739.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD1]
          Length = 274

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V S
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 90

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++ +H+  A TAR R      LAP+ AA     ++ SG ++ ++FG ER GL NE
Sbjct: 91  TLGDALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLANE 149

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E +   +++   +  T A   E
Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPAQQPAADTGTLAQSDE 209

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 210 IERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 260


>gi|167552173|ref|ZP_02345926.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323136|gb|EDZ10975.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|168230251|ref|ZP_02655309.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471963|ref|ZP_03077947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458327|gb|EDX47166.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335164|gb|EDZ21928.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|322834489|ref|YP_004214516.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
 gi|321169690|gb|ADW75389.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 16/179 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSSSANADCVIDS 70
           IILV P   EN+G  ARAM       LR+V+      P  GW +  ++        ++ +
Sbjct: 5   IILVSPARPENVGAAARAMKTMGFASLRIVDSEAHLKPEAGWVAHGSQD-------ILQN 57

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              FS L EA+AD+ F  ATTAR+R  F     P+E  + L E+     +  ++FGRE  
Sbjct: 58  ALHFSTLAEALADIDFTVATTARSRAKFHYYCTPQELQVQLEEKSQWVNHAALVFGREDS 117

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           GLTNEE+ L++ +   P+   +PSLN+ QAV++    C + S ++   +VK +N  A +
Sbjct: 118 GLTNEELELADVLTGVPMVADYPSLNLGQAVMVF---CYQLSSLNQVTSVKPENAEAGQ 173


>gi|238784221|ref|ZP_04628234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           bercovieri ATCC 43970]
 gi|238714930|gb|EEQ06929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           bercovieri ATCC 43970]
          Length = 257

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 125/243 (51%), Gaps = 7/243 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192
           +   +  ++ P NP + SLN++ AV ++ +E      + + ++   ++E+  P     +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAHLDRLQAAAPIIEEEEAPYPLVDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K  + 
Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243

Query: 253 SSR 255
             R
Sbjct: 244 PQR 246


>gi|110642697|ref|YP_670427.1| tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536]
 gi|191172639|ref|ZP_03034178.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|300998261|ref|ZP_07181949.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|123147823|sp|Q0TEV3|TRMJ_ECOL5 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|110344289|gb|ABG70526.1| hypothetical tRNA/rRNA methyltransferase YfhQ [Escherichia coli
           536]
 gi|190907112|gb|EDV66712.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|300304033|gb|EFJ58553.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|324011236|gb|EGB80455.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           60-1]
          Length = 246

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPILDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|300958833|ref|ZP_07170944.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|300314518|gb|EFJ64302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
          Length = 246

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-KHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|91774342|ref|YP_567034.1| RNA methyltransferase TrmH, group 1 [Methanococcoides burtonii DSM
           6242]
 gi|91713357|gb|ABE53284.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242]
          Length = 231

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 24/239 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    NIG VARAM NF  + L LVNP +     +AR+ +++A  +++S +    
Sbjct: 7   IILVEPLYQGNIGSVARAMKNFGFSDLILVNPCE--LKMEARAFASHAYDILESAKTVET 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVL-----APKEAAIVLNERIFSGQN--VGIIFGRER 129
           ++EA+     + ATT          +      P++  +      FSG +  + +IFGRE 
Sbjct: 65  IEEALEGSDLVIATTGITGMKIDEHIRMPPYTPRDLKVK-----FSGMSGTIAVIFGRED 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            G TNEE+ LS+ I+S P + ++P +N+S AV ++++E   + I++ E      N+ A  
Sbjct: 120 HGFTNEELKLSDVIVSIPTSKIYPIMNLSHAVTIILYEM--SQILAGE------NSLADG 171

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L    ++++  L++  Y  P  KK+K       IF R +LM  EV  LRG +  + K
Sbjct: 172 FDLRLLFEHIDEVLDDIDY--PAHKKEKTHLMFKRIFGRAQLMPREVQTLRGFIGKVQK 228


>gi|221133855|ref|ZP_03560160.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Glaciecola sp. HTCC2999]
          Length = 238

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 16/242 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+ L LV+P    P  K+ + +A A  V+ +  + S+
Sbjct: 7   IVLVNTSHTGNIGSTARAMKTMGLSDLYLVDPVSA-PDGKSSALAAGAGDVLANATIVSD 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D   I  T+AR+R     +L P+E  + + +    G  V ++FGRE  GL+NEE
Sbjct: 66  LSEAVKDCSLIVGTSARSRTLPWPMLTPRECGVKMVQEGQKGP-VALVFGRENNGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L +  +  P NP + SLN++ AV  + +E     +        E + P ++ +L  F 
Sbjct: 125 LQLCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMGYLNLDSYPDMESDYPLSE-DLERFY 183

Query: 197 DYLEISLEERGYF---RP---VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +LE +L E G+     P   + K +++++       RPE   +E+ +LRGI+S +DK +
Sbjct: 184 VHLENTLTETGFIVKNHPGVVMTKLRRLVNR-----ARPE--SQELNILRGILSAIDKKN 236

Query: 251 RQ 252
           +Q
Sbjct: 237 KQ 238


>gi|62183015|ref|YP_219432.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224586415|ref|YP_002640214.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130648|gb|AAX68351.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224470943|gb|ACN48773.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322615759|gb|EFY12679.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620607|gb|EFY17467.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621765|gb|EFY18615.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627490|gb|EFY24281.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630797|gb|EFY27561.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637984|gb|EFY34685.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642253|gb|EFY38861.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645972|gb|EFY42490.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651139|gb|EFY47524.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656604|gb|EFY52892.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658737|gb|EFY54994.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661820|gb|EFY58036.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666433|gb|EFY62611.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672409|gb|EFY68521.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676281|gb|EFY72352.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679628|gb|EFY75673.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684338|gb|EFY80342.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322717522|gb|EFZ09093.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191821|gb|EFZ77070.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198910|gb|EFZ84008.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200976|gb|EFZ86045.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209373|gb|EFZ94306.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212939|gb|EFZ97741.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216682|gb|EGA01407.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219820|gb|EGA04299.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226115|gb|EGA10332.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228768|gb|EGA12897.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236620|gb|EGA20696.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239879|gb|EGA23926.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242073|gb|EGA26102.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247486|gb|EGA31441.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250588|gb|EGA34470.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259317|gb|EGA42959.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263805|gb|EGA47326.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265600|gb|EGA49096.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270045|gb|EGA53493.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|262372308|ref|ZP_06065587.1| RNA methyltransferase [Acinetobacter junii SH205]
 gi|262312333|gb|EEY93418.1| RNA methyltransferase [Acinetobacter junii SH205]
          Length = 281

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 132/258 (51%), Gaps = 21/258 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A  +I+ +++   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLILVAPK-TYPHPDIDALAAGAQDLIEKIQIVDT 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D H ++ T+AR+R     +L  + AA    +     QN+ I+FGRE  GLTNEE
Sbjct: 77  LEQAIEDCHLVFGTSARSRTIPWPLLDVRPAAQESLKAANLDQNIAIVFGREDRGLTNEE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---------- 186
           +AL+N  ++ PVNP +  LN++QA+ ++ +E    ++  +++N  +Q  P          
Sbjct: 137 LALANYHLTIPVNPSYGVLNVAQAIQVVCYELRMAALELNQQNT-DQTDPQEHMQLKQNQ 195

Query: 187 --------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                    T+ ++  F  +LE  L E   F      + +   L  +F R +L R E  L
Sbjct: 196 SMQWDEPLVTQKQMEEFYPHLEKMLTEIE-FLDPNNPRLLPLRLRRLFGRIQLDRMEYHL 254

Query: 239 LRGIVSTLDKFSRQSSRR 256
           LRGI S +   +  S ++
Sbjct: 255 LRGIFSRVQALANGSWKK 272


>gi|238910757|ref|ZP_04654594.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 228

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|323964754|gb|EGB60222.1| RNA methyltransferase [Escherichia coli M863]
 gi|323975837|gb|EGB70933.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|327250029|gb|EGE61759.1| hypothetical protein ECSTEC7V_5191 [Escherichia coli STEC_7v]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +   +S
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERAMS 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|239994266|ref|ZP_04714790.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii ATCC 27126]
          Length = 254

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     NIG  ARAM    L+ L LV+P +  P  +A + +A A  V+ + ++ S 
Sbjct: 7   IILVNTSHTGNIGSTARAMKTMGLSSLYLVDPVN-EPDGQASALAAGAGDVLANAKIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+ D   +  T+AR+R +   +L P++    L + +     V ++FGRE  GLTNEE
Sbjct: 66  LEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  +  P NP + SLN++ AV  + +E     +        E+  P    +L  F 
Sbjct: 125 LQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAYLNRETYPSVEEEYPLND-DLERFY 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +LE   + R       ++  L  +F R     +E+ +LRGI++++DK
Sbjct: 184 THLETTLEGTSFIRK-SHPGVVMTKLRRLFNRARPESQELNILRGILASIDK 234


>gi|238765526|ref|ZP_04626442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           kristensenii ATCC 33638]
 gi|238696265|gb|EEP89066.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           kristensenii ATCC 33638]
          Length = 257

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 7/247 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192
           +   +  ++ P NP + SLN++ AV ++ +E      +   ++   V+E+  P     +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLVDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K  + 
Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243

Query: 253 SSRRNNV 259
             R  +V
Sbjct: 244 PQRGADV 250


>gi|161504866|ref|YP_001571978.1| putative RNA methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866213|gb|ABX22836.1| hypothetical protein SARI_02991 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIAVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|168244498|ref|ZP_02669430.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205336649|gb|EDZ23413.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|119505400|ref|ZP_01627474.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2080]
 gi|119458855|gb|EAW39956.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2080]
          Length = 247

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 130/243 (53%), Gaps = 14/243 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG VARAM N  LT+L LV P+  +P+ +A   +A+A+ V+ +  V   
Sbjct: 8   VVLVHTSHPGNIGGVARAMKNMGLTRLTLVKPK-AFPAPEALWRAASAEDVLANATVVET 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----SGQNVGIIFGRERWGL 132
           ++EA+    FI  T+AR R     +  P + A    ER++     G+ V I+FGRE  GL
Sbjct: 67  VEEAVQGAQFIVGTSARERR----IPWPLQDAHHCGERLYRHAAQGEEVVILFGREDRGL 122

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ--NTP-ATK 189
            NEE+ L N     P +  +PSLN++ AV ++ +E   + +  S    ++   +TP A  
Sbjct: 123 LNEELELCNLHCHIPTHESYPSLNLAMAVQIVAYEIRMSQLAGSSATEEDAAWDTPFAPA 182

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS-TLDK 248
            ++  F  +LE +L +  +  P +  ++++  L  +F R  L   E+ +LRG++S T  K
Sbjct: 183 EDMARFYTHLEQTLIDIEFLDP-KAPRQLMRRLKRLFNRVRLDEMELNILRGVLSETQKK 241

Query: 249 FSR 251
            SR
Sbjct: 242 TSR 244


>gi|297519997|ref|ZP_06938383.1| putative RNA methyltransferase [Escherichia coli OP50]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|153005807|ref|YP_001380132.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152029380|gb|ABS27148.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 12/242 (4%)

Query: 10  NSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARSSSANADC 66
           N A  PV I+L+ P+  EN+G VARAM NF L    +  +   D      AR  + +A+ 
Sbjct: 5   NPAAPPVRIVLLRPRNPENLGAVARAMKNFGLADWAIAELGTHD---FATARRVAVHAED 61

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++D  R+   L EA+AD  ++  T++R R   K  L+P E A    ER  +G+   ++FG
Sbjct: 62  LLDRPRLVRTLDEAVADCAWVVGTSSR-RVRGKRRLSPAEVAREAMERAPAGRTA-LVFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            ER GL N+E+   + + + P +   PS+N++QAVLL  +E    ++ + E         
Sbjct: 120 DERSGLANDEVLRCHDLSAIPTDEAQPSVNLAQAVLLYAYELRRAALATREPAPAAAG-- 177

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT GEL    + L  +L E G+      ++  + DL S   R  L R EV L    + T+
Sbjct: 178 ATDGELRGLEEMLRAALRETGFL--AGPERHAVRDLLSPLRRARLTRSEVRLWTAALRTM 235

Query: 247 DK 248
            +
Sbjct: 236 GR 237


>gi|194450554|ref|YP_002048619.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408858|gb|ACF69077.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGCTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|320539263|ref|ZP_08038933.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
 gi|320030655|gb|EFW12664.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
          Length = 244

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLI-KPDSQAIALAAGASDVIGNAALVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           + +AI     +  T+AR+R     +L P+E  +     + +G++  V ++FGRER GLTN
Sbjct: 66  VDDAINGCSLVVGTSARSRTLPWPMLEPRECGV---RAVQAGEHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTP-ATKGEL 192
           +E+   +  ++ P NP + SLN++ AV ++ +E     +   +     ++ TP     +L
Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYELRVAYLDRQQTGGTPQEETPYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L+  G+ RP    + M   L  +F R     +E+ +LRG++++++K
Sbjct: 183 ERFYQHLEQTLQRTGFIRPAHPGQVM-SRLRRLFTRARPEEQELNILRGMLTSIEK 237


>gi|253774967|ref|YP_003037798.1| RNA methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164328|ref|YP_003047438.1| putative RNA methyltransferase [Escherichia coli B str. REL606]
 gi|300930632|ref|ZP_07146021.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|253326011|gb|ACT30613.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976231|gb|ACT41902.1| predicted rRNA methyltransferase [Escherichia coli B str. REL606]
 gi|253980389|gb|ACT46059.1| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
 gi|300461483|gb|EFK24976.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|313848845|emb|CAQ34761.2| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|296158968|ref|ZP_06841796.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           Ch1-1]
 gi|295890843|gb|EFG70633.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           Ch1-1]
          Length = 278

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 17/241 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV+PR        +A + ++ AD V+ S  V  
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPQVQADPEAIAMASGADDVLASAHVVP 84

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++ +H+  A TAR R       AP+ AA V  E+   G+ + ++FG ER GL+NE
Sbjct: 85  TLADALSGVHWSIALTARLREYGPPQWAPRAAAGVAREQAMHGE-IALVFGNERTGLSNE 143

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------- 186
           ++   +A+   P NP + SLN++QAV ++ +E     + +          P         
Sbjct: 144 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATTAAHAAPRAAAGPAEP 203

Query: 187 ----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A   E+ S   +LE +L    +  P    KK++  L  +F R  L REEV ++RGI
Sbjct: 204 AGARAASDEIESMFMHLESALVALEFLDPA-NPKKLMSRLRRLFARSGLEREEVNIVRGI 262

Query: 243 V 243
            
Sbjct: 263 A 263


>gi|117626762|ref|YP_860085.1| putative RNA methyltransferase [Escherichia coli APEC O1]
 gi|218561635|ref|YP_002394548.1| RNA methyltransferase [Escherichia coli S88]
 gi|331661038|ref|ZP_08361970.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           TA206]
 gi|115515886|gb|ABJ03961.1| putative rRNA methyltransferase [Escherichia coli APEC O1]
 gi|218368404|emb|CAR06224.1| rRNA methyltransferase [Escherichia coli S88]
 gi|222036146|emb|CAP78891.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           LF82]
 gi|294490761|gb|ADE89517.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           IHE3034]
 gi|307629574|gb|ADN73878.1| putative RNA methyltransferase [Escherichia coli UM146]
 gi|312949034|gb|ADR29861.1| putative RNA methyltransferase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315284984|gb|EFU44429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           110-3]
 gi|315298366|gb|EFU57621.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           16-3]
 gi|323950509|gb|EGB46387.1| RNA methyltransferase [Escherichia coli H252]
 gi|331052080|gb|EGI24119.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           TA206]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVFKT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|333010495|gb|EGK29928.1| hypothetical protein SFVA6_0291 [Shigella flexneri VA-6]
          Length = 261

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 101/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  ++D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSSD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|291618423|ref|YP_003521165.1| YfhQ [Pantoea ananatis LMG 20103]
 gi|291153453|gb|ADD78037.1| YfhQ [Pantoea ananatis LMG 20103]
 gi|327394816|dbj|BAK12238.1| tRNA/rRNA methyltransferase YfhQ [Pantoea ananatis AJ13355]
          Length = 248

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 13/248 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A S +A A  VI   ++  +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGEAKIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAIA    +  T+AR+R+    +L  +E  +   + I  GQ   V ++FGRER GLTN
Sbjct: 66  LDEAIAGCSLVVGTSARSRSLPWPMLDARECGV---KSIEEGQQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----G 190
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E    +    A+      
Sbjct: 123 DELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQAQENQTPKPQYDASPYPLVD 182

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L  F  ++E  + E G+ R      +++  L  ++ R    R+E+ +LRG++S+ +K  
Sbjct: 183 DLERFYQHMENMMLESGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSSFEK-- 239

Query: 251 RQSSRRNN 258
           R+ +R + 
Sbjct: 240 RKGTRTDG 247


>gi|309784714|ref|ZP_07679347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 1617]
 gi|308927084|gb|EFP72558.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 1617]
          Length = 245

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVT-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|91214121|ref|YP_544107.1| putative RNA methyltransferase [Escherichia coli UTI89]
 gi|237704139|ref|ZP_04534620.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91075695|gb|ABE10576.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           UTI89]
 gi|226902051|gb|EEH88310.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 235

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF  
Sbjct: 12  IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVFKT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 71  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 131 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 161


>gi|261856767|ref|YP_003264050.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
           neapolitanus c2]
 gi|261837236|gb|ACX97003.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
           neapolitanus c2]
          Length = 271

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 130/252 (51%), Gaps = 12/252 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L       N+G VARAM N  L +L LV+P+     ++A +++ +A  ++++ R   N
Sbjct: 22  IVLCGTSHTGNLGAVARAMKNMGLHRLVLVSPKTAI-DDQALATAKHAADILNTARQVDN 80

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD   ++ATTAR R+    V++ ++AA  +     +G  + I+FG ER GLTN+E
Sbjct: 81  LPDALADSVEVWATTARPRDLHLPVMSARDAAETIAASPSTGV-ISIVFGAERTGLTNQE 139

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV--WECMENSIVSSEKNVKEQNTPATKGELLS 194
           I+ +  II  P NP +P LN+ QAV ++   W     +  S+ +   +    AT  +  +
Sbjct: 140 ISWAQRIIEIPANPDYPVLNLGQAVQIVAYEWRMAHGTARSAPQPNIDSTELATTAQWAA 199

Query: 195 FLDYLEISLEERGYFR---PVEK-----KKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           F   L   L+   +F      EK     +++++  L  +  R    R E+ +++GIV  L
Sbjct: 200 FEKRLTEQLDRTSFFHRTGSAEKDIAANRERLMARLRVLCRRANPTRNELAVMQGIVRAL 259

Query: 247 DKFSRQSSRRNN 258
            + +   S  N 
Sbjct: 260 TESTATQSGANT 271


>gi|307313663|ref|ZP_07593282.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|306906486|gb|EFN36999.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|315063704|gb|ADT78031.1| predicted rRNA methyltransferase [Escherichia coli W]
 gi|323380214|gb|ADX52482.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|56480615|ref|NP_710140.2| putative RNA methyltransferase [Shigella flexneri 2a str. 301]
 gi|191167401|ref|ZP_03029216.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|218556938|ref|YP_002389852.1| putative RNA methyltransferase [Escherichia coli IAI1]
 gi|300824445|ref|ZP_07104558.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|309795680|ref|ZP_07690096.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|331666231|ref|ZP_08367112.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA271]
 gi|331680570|ref|ZP_08381229.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
 gi|56384166|gb|AAN45847.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|190902541|gb|EDV62275.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|218363707|emb|CAR01367.1| rRNA methyltransferase [Escherichia coli IAI1]
 gi|281603740|gb|ADA76724.1| putative rRNA methylase [Shigella flexneri 2002017]
 gi|300523087|gb|EFK44156.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|308120804|gb|EFO58066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|313646239|gb|EFS10701.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella flexneri
           2a str. 2457T]
 gi|331066442|gb|EGI38319.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA271]
 gi|331072033|gb|EGI43369.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
 gi|332749167|gb|EGJ79590.1| hypothetical protein SFK671_5214 [Shigella flexneri K-671]
 gi|332749663|gb|EGJ80079.1| hypothetical protein SF274771_5233 [Shigella flexneri 2747-71]
 gi|332768790|gb|EGJ98969.1| RNA methyltransferase, TrmH , group 1 family protein [Shigella
           flexneri 2930-71]
          Length = 228

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|213580553|ref|ZP_03362379.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 154

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|206560519|ref|YP_002231284.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           cenocepacia J2315]
 gi|198036561|emb|CAR52458.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           cenocepacia J2315]
          Length = 244

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V S
Sbjct: 1   MLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVS 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA++ +H+  A TAR R      LAP+ AA   + ++ +G ++ ++FG ER GL NE
Sbjct: 61  TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGTG-DIALVFGNERTGLANE 119

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E +   S +   E  T A   E
Sbjct: 120 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPPAEAGTLAQSDE 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRG+ 
Sbjct: 180 IERMYVHLEHALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGVA 230


>gi|281179586|dbj|BAI55916.1| putative RNA methyltransferase [Escherichia coli SE15]
          Length = 246

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLASGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|332162657|ref|YP_004299234.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606763|emb|CBY28261.1| tRNA:Cm32/Um32 methyltransferase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666887|gb|ADZ43531.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859249|emb|CBX69599.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           enterocolitica W22703]
          Length = 257

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 7/243 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTP-ATKGEL 192
           +   +  ++ P NP + SLN++ AV ++ +E   + +   +     V+E+  P     +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVSFLDRQQAAAPIVEEEEAPYPLVDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K  + 
Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243

Query: 253 SSR 255
             R
Sbjct: 244 PQR 246


>gi|197249650|ref|YP_002149541.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213353|gb|ACH50750.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 228

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|317490852|ref|ZP_07949288.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920399|gb|EFV41722.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 257

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 21  IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATIVDT 79

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
             EAIA    +  T+AR+R+    +L P+E            ++  V I+FGRER GLTN
Sbjct: 80  FDEAIAGCSLVVGTSARSRSLPWPMLEPRECG---QRSAMESEHAPVAIVFGRERVGLTN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGEL 192
           EE+   +  ++ P NP + SLN++ AV ++ +E     +  +++ + V E+       +L
Sbjct: 137 EELQKCHYHVAIPANPEYSSLNLAMAVQIISYEIRVAHLDRIAAHEPVPEEEPYPLVDDL 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L   G+ RP      ++  L  +F R     +E+ +LRGI+++++K
Sbjct: 197 ERFYAHLEETLHATGFIRPTH-PGNIMSRLRRLFTRARPEAQELNILRGILASIEK 251


>gi|333009340|gb|EGK28796.1| hypothetical protein SFK218_0239 [Shigella flexneri K-218]
          Length = 228

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTALAVA 191


>gi|282897430|ref|ZP_06305432.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
 gi|281198082|gb|EFA72976.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
          Length = 245

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G +AR M NF L  L LVNP+    S ++   + +A  ++++ R+  N
Sbjct: 13  VILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEILETARIVDN 72

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L  A+A      AT  R+ N    + +P+ A   +L E   S +  G+IFGRE  GLTN+
Sbjct: 73  LTTALAGCDRAIATIGRDYNGELPIESPRHALPWLLGE---SEKPGGLIFGREDRGLTNQ 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           EI  +  ++  P +P + SLN++ AV +  +E +  S+++ E         AT   L S+
Sbjct: 130 EINYAQKLVFIPTSPEYISLNLATAVSICCYE-LSQSLMTMETGKMPTRNIATLDMLESY 188

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              LE  L   GY  P     +M +    ++ R EL   EV +LRGI+
Sbjct: 189 YQELESLLLSIGYLYPHTASSRM-EKFRHLYNRSELTTTEVAMLRGIL 235


>gi|15803059|ref|NP_289089.1| putative ATP synthase beta subunit [Escherichia coli O157:H7
           EDL933]
 gi|15832652|ref|NP_311425.1| ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai]
 gi|74313058|ref|YP_311477.1| putative ATP synthase subunit beta [Shigella sonnei Ss046]
 gi|82777915|ref|YP_404264.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
 gi|157158953|ref|YP_001463855.1| RNA methyltransferase [Escherichia coli E24377A]
 gi|168748403|ref|ZP_02773425.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757811|ref|ZP_02782818.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761148|ref|ZP_02786155.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768631|ref|ZP_02793638.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773547|ref|ZP_02798554.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778504|ref|ZP_02803511.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787884|ref|ZP_02812891.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|168798909|ref|ZP_02823916.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|191169250|ref|ZP_03031002.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|193068368|ref|ZP_03049331.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|195936678|ref|ZP_03082060.1| methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208808795|ref|ZP_03251132.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814295|ref|ZP_03255624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819499|ref|ZP_03259819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397596|ref|YP_002272007.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920010|ref|YP_002294094.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217326776|ref|ZP_03442859.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555057|ref|YP_002387970.1| putative methyltransferase [Escherichia coli IAI1]
 gi|254794482|ref|YP_003079319.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017319|ref|ZP_05431184.1| predicted methyltransferase [Shigella sp. D9]
 gi|261223032|ref|ZP_05937313.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259417|ref|ZP_05951950.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283757|ref|YP_003500575.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli O55:H7 str. CB9615]
 gi|293446886|ref|ZP_06663308.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|300817697|ref|ZP_07097912.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300820797|ref|ZP_07100947.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|300927098|ref|ZP_07142849.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|301330369|ref|ZP_07223016.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|309794420|ref|ZP_07688843.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|331669280|ref|ZP_08370128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA271]
 gi|331678525|ref|ZP_08379200.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H591]
 gi|332278314|ref|ZP_08390727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
           D9]
 gi|20178206|sp|Q8XA83|TRMJ_ECO57 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123561907|sp|Q32D32|TRMJ_SHIDS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123616509|sp|Q3YZ20|TRMJ_SHISS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|12516936|gb|AAG57646.1|AE005483_5 putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362869|dbj|BAB36821.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|73856535|gb|AAZ89242.1| putative ATP synthase beta subunit [Shigella sonnei Ss046]
 gi|81242063|gb|ABB62773.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
 gi|157080983|gb|ABV20691.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E24377A]
 gi|187770559|gb|EDU34403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017081|gb|EDU55203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003494|gb|EDU72480.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355295|gb|EDU73714.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362206|gb|EDU80625.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368377|gb|EDU86793.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372329|gb|EDU90745.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|189378640|gb|EDU97056.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|190900703|gb|EDV60500.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|192958320|gb|EDV88760.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|208728596|gb|EDZ78197.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735572|gb|EDZ84259.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739622|gb|EDZ87304.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158996|gb|ACI36429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209763218|gb|ACI79921.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763220|gb|ACI79922.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763222|gb|ACI79923.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763224|gb|ACI79924.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763226|gb|ACI79925.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209913269|dbj|BAG78343.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217319143|gb|EEC27568.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218361825|emb|CAQ99423.1| putative methyltransferase [Escherichia coli IAI1]
 gi|254593882|gb|ACT73243.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763630|gb|ADD57591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli O55:H7 str. CB9615]
 gi|291323716|gb|EFE63144.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|300416917|gb|EFK00228.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|300526550|gb|EFK47619.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|300529685|gb|EFK50747.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300843703|gb|EFK71463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|308121876|gb|EFO59138.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|320188871|gb|EFW63530.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320200096|gb|EFW74685.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli EC4100B]
 gi|320640881|gb|EFX10369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H7 str. G5101]
 gi|320646323|gb|EFX15250.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H- str. 493-89]
 gi|320651503|gb|EFX19890.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H- str. H 2687]
 gi|320657214|gb|EFX25023.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320662820|gb|EFX30152.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667624|gb|EFX34539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323169391|gb|EFZ55067.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella sonnei 53G]
 gi|323944589|gb|EGB40657.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019987|gb|EGB89206.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           117-3]
 gi|326340336|gb|EGD64140.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326345020|gb|EGD68764.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           1044]
 gi|331064474|gb|EGI36385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA271]
 gi|331074985|gb|EGI46305.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H591]
 gi|332087983|gb|EGI93108.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella boydii 5216-82]
 gi|332100666|gb|EGJ04012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
           D9]
          Length = 245

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|333022343|gb|EGK41581.1| hypothetical protein SFK304_0112 [Shigella flexneri K-304]
          Length = 261

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|170767374|ref|ZP_02901827.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
 gi|170123708|gb|EDS92639.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
          Length = 246

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVITYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|320180527|gb|EFW55458.1| tRNA:Cm32/Um32 methyltransferase [Shigella boydii ATCC 9905]
          Length = 245

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANIPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|90021058|ref|YP_526885.1| RNA methyltransferase [Saccharophagus degradans 2-40]
 gi|89950658|gb|ABD80673.1| RNA methyltransferase TrmH, group 1 [Saccharophagus degradans 2-40]
          Length = 267

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 7/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+     NIG  ARAM N  L +L LV+P+  +P+EKA   +A+A  V+D   V  +
Sbjct: 12  IVMVNTTHPGNIGGAARAMKNMGLGKLYLVDPKQ-YPAEKAVWRAASATDVLDDAVVVGS 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD   +  T+AR R     +L P+E           G+ V I+FGRE  GLTNEE
Sbjct: 71  LDEAIADCTLVVGTSARERRIPWPLLTPRECGDKAWAEAGKGE-VAIVFGREDRGLTNEE 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----PATKGEL 192
           +   +  +  P NP + SLNI+ A+ ++ +E     +   E      +     PA + ++
Sbjct: 130 LQKCHYHVHIPSNPDYSSLNIAAAIQVLCYEIRMTHLAEKEGKPIHFDDWDVPPAKQQDM 189

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             +  +LE +L +   F  +   ++ +  +  +F R  +   E+ +LRG+++++
Sbjct: 190 EYYYAHLEETLAKLD-FLDLSNPRQTVTRIRRMFNRIRMDEMEISILRGMLTSI 242


>gi|170019185|ref|YP_001724139.1| RNA methyltransferase [Escherichia coli ATCC 8739]
 gi|312973224|ref|ZP_07787396.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1827-70]
 gi|169754113|gb|ACA76812.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
           8739]
 gi|310331819|gb|EFP99054.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1827-70]
 gi|323941206|gb|EGB37391.1| RNA methyltransferase [Escherichia coli E482]
          Length = 246

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|306815400|ref|ZP_07449549.1| putative RNA methyltransferase [Escherichia coli NC101]
 gi|305851062|gb|EFM51517.1| putative RNA methyltransferase [Escherichia coli NC101]
 gi|324007734|gb|EGB76953.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           57-2]
          Length = 228

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVFKT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYAMPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|52425783|ref|YP_088920.1| LasT protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307835|gb|AAU38335.1| LasT protein [Mannheimia succiniciproducens MBEL55E]
          Length = 244

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 26/244 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM    L  L LV+P+ G   E+A + SA A+ V+    +  +
Sbjct: 7   LVLVETSHSGNIGSAARAMKTMGLANLYLVSPKQGI-DEQAVALSAGAEDVLRKAVIVKS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             EA+AD   +  T+AR R+   +++ P+E   +  +    GQ + I+FGRE++GLTN+E
Sbjct: 66  FDEAVADCSLVIGTSARLRHLQSTLIEPRECGKISIQEAHCGQ-IAIVFGREKFGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLL------MVW------ECMENSIVSSEKNVKEQN 184
           +      ++ P NP + SLN++ AV L      M W      E M +S+  ++K      
Sbjct: 125 LLKCRYHLNIPANPDYSSLNLAMAVQLVSYELRMAWLNGRQSESMSDSVEIAQK------ 178

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
              T  EL  F  + E   +  G+     + + ++  L  ++ R  L + E+ +LRG++S
Sbjct: 179 --PTALELEYFFAHTEKLYQSLGFI----QNQGVMQKLRHLYNRVNLKKNELNILRGMLS 232

Query: 245 TLDK 248
            ++K
Sbjct: 233 AVEK 236


>gi|88808981|ref|ZP_01124490.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
 gi|88786923|gb|EAR18081.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
          Length = 244

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 3/235 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++LV+P    N+G VAR   NF +  LRLV PR     E+A   + +   V+   + 
Sbjct: 2   GLAVVLVEPAGPLNVGSVARLCANFGIDDLRLVAPRCRISDEEAVRMAVHGQTVLRKAKT 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L EAI D   + A+  R  +    +    +A   + E + SG  V ++FGRE  GL+
Sbjct: 62  FETLLEAIGDCQRVVASCGRIDHGHIPLQTSDQAMPWVEEGLRSGAQVALVFGREDRGLS 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGE 191
           NEE+ LS  ++    +  +PSLN+S AV +++ +     ++    +   Q  P  A + +
Sbjct: 122 NEELLLSQRVVRLQTDDQYPSLNLSHAVAVVLHDLQRCKLLIRSDHPCPQLEPEAAAQPQ 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           L   +   +  L E G+  P   K +M   + S+  R  +  +E+ +LRG+V  L
Sbjct: 182 LDDCMQDAQELLLEAGFLLPHTAKARMA-KIRSLLQRARIRPQELAMLRGMVRQL 235


>gi|16130457|ref|NP_417027.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113861|ref|NP_708371.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
 gi|26248900|ref|NP_754940.1| putative tRNA/rRNA methyltransferase YfhQ [Escherichia coli CFT073]
 gi|30063922|ref|NP_838093.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|82544981|ref|YP_408928.1| ATP synthase beta subunit [Shigella boydii Sb227]
 gi|89109338|ref|AP_003118.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91211859|ref|YP_541845.1| putative ATP synthase subunit beta [Escherichia coli UTI89]
 gi|110806463|ref|YP_689983.1| putative ATP synthase subunit beta [Shigella flexneri 5 str. 8401]
 gi|117624760|ref|YP_853673.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|157162008|ref|YP_001459326.1| RNA methyltransferase [Escherichia coli HS]
 gi|170082142|ref|YP_001731462.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683683|ref|YP_001744721.1| RNA methyltransferase [Escherichia coli SMS-3-5]
 gi|187732283|ref|YP_001881323.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|188493660|ref|ZP_03000930.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|193064014|ref|ZP_03045099.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194427269|ref|ZP_03059819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|194437647|ref|ZP_03069743.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|215487882|ref|YP_002330313.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559458|ref|YP_002392371.1| methyltransferase [Escherichia coli S88]
 gi|218690652|ref|YP_002398864.1| putative methyltransferase [Escherichia coli ED1a]
 gi|218696159|ref|YP_002403826.1| putative methyltransferase [Escherichia coli 55989]
 gi|218706035|ref|YP_002413554.1| putative methyltransferase [Escherichia coli UMN026]
 gi|227887568|ref|ZP_04005373.1| possible methyltransferase [Escherichia coli 83972]
 gi|238901697|ref|YP_002927493.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772572|ref|YP_003035403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162506|ref|YP_003045614.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|256021783|ref|ZP_05435648.1| predicted methyltransferase [Escherichia sp. 4_1_40B]
 gi|260845162|ref|YP_003222940.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|293405973|ref|ZP_06649965.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|293410947|ref|ZP_06654523.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415800|ref|ZP_06658443.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|297517122|ref|ZP_06935508.1| putative methyltransferase [Escherichia coli OP50]
 gi|298381774|ref|ZP_06991373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli FVEC1302]
 gi|300898358|ref|ZP_07116705.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300904291|ref|ZP_07122149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300920692|ref|ZP_07137100.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300930177|ref|ZP_07145595.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|300940214|ref|ZP_07154814.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300951756|ref|ZP_07165575.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300982032|ref|ZP_07175854.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|301022139|ref|ZP_07186062.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|301024815|ref|ZP_07188452.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|301047169|ref|ZP_07194262.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|301302891|ref|ZP_07209019.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|301648290|ref|ZP_07248031.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|306814398|ref|ZP_07448560.1| putative methyltransferase [Escherichia coli NC101]
 gi|307139167|ref|ZP_07498523.1| putative methyltransferase [Escherichia coli H736]
 gi|307313897|ref|ZP_07593513.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|312965450|ref|ZP_07779682.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 2362-75]
 gi|331643153|ref|ZP_08344288.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H736]
 gi|331648230|ref|ZP_08349320.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M605]
 gi|331653966|ref|ZP_08354967.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M718]
 gi|331658680|ref|ZP_08359624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA206]
 gi|331664097|ref|ZP_08365007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA143]
 gi|331673988|ref|ZP_08374751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA280]
 gi|83287927|sp|P0AE02|TRMJ_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|83287928|sp|P0AE01|TRMJ_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|83287929|sp|P0AE03|TRMJ_SHIFL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122422895|sp|Q1R8K0|TRMJ_ECOUT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123342618|sp|Q0T1Y7|TRMJ_SHIF8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123558992|sp|Q31XV8|TRMJ_SHIBS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|166234835|sp|A1AE69|TRMJ_ECOK1 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|26109306|gb|AAN81508.1|AE016764_190 Hypothetical tRNA/rRNA methyltransferase yfhQ [Escherichia coli
           CFT073]
 gi|1788881|gb|AAC75585.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799940|dbj|BAA16426.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|24052955|gb|AAN44078.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
 gi|30042178|gb|AAP17903.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|81246392|gb|ABB67100.1| putative ATP synthase beta subunit [Shigella boydii Sb227]
 gi|91073433|gb|ABE08314.1| putative ATP synthase beta subunit [Escherichia coli UTI89]
 gi|110616011|gb|ABF04678.1| putative ATP synthase beta subunit [Shigella flexneri 5 str. 8401]
 gi|115513884|gb|ABJ01959.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|157067688|gb|ABV06943.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
 gi|169889977|gb|ACB03684.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521401|gb|ACB19579.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           SMS-3-5]
 gi|187429275|gb|ACD08549.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|188488859|gb|EDU63962.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|192929249|gb|EDV82858.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194414590|gb|EDX30862.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|194423453|gb|EDX39444.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|215265954|emb|CAS10363.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218352891|emb|CAU98690.1| putative methyltransferase [Escherichia coli 55989]
 gi|218366227|emb|CAR03974.1| putative methyltransferase [Escherichia coli S88]
 gi|218428216|emb|CAR09131.2| putative methyltransferase [Escherichia coli ED1a]
 gi|218433132|emb|CAR14028.1| putative methyltransferase [Escherichia coli UMN026]
 gi|222034243|emb|CAP76984.1| Uncharacterized tRNA/rRNA methyltransferase yfhQ [Escherichia coli
           LF82]
 gi|227835918|gb|EEJ46384.1| possible methyltransferase [Escherichia coli 83972]
 gi|238862663|gb|ACR64661.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378132|emb|CAQ32905.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323616|gb|ACT28218.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974407|gb|ACT40078.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978574|gb|ACT44244.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|257760309|dbj|BAI31806.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260448388|gb|ACX38810.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
 gi|281601935|gb|ADA74919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella
           flexneri 2002017]
 gi|291428181|gb|EFF01208.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|291433448|gb|EFF06427.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|291471415|gb|EFF13899.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491693|gb|ADE90449.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           IHE3034]
 gi|298279216|gb|EFI20730.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli FVEC1302]
 gi|299881340|gb|EFI89551.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|300300917|gb|EFJ57302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|300357970|gb|EFJ73840.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300396346|gb|EFJ79884.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|300403749|gb|EFJ87287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300408860|gb|EFJ92398.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|300412340|gb|EFJ95650.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300449040|gb|EFK12660.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300454970|gb|EFK18463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300461937|gb|EFK25430.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|300841826|gb|EFK69586.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|301073641|gb|EFK88447.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|305851792|gb|EFM52244.1| putative methyltransferase [Escherichia coli NC101]
 gi|306906398|gb|EFN36913.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|307554555|gb|ADN47330.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|307625913|gb|ADN70217.1| putative methyltransferase [Escherichia coli UM146]
 gi|309702864|emb|CBJ02195.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
 gi|312289870|gb|EFR17758.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 2362-75]
 gi|312947109|gb|ADR27936.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313651021|gb|EFS15421.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315061851|gb|ADT76178.1| predicted methyltransferase [Escherichia coli W]
 gi|315137156|dbj|BAJ44315.1| RNA methyltransferase [Escherichia coli DH1]
 gi|315256554|gb|EFU36522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           85-1]
 gi|315288055|gb|EFU47457.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           110-3]
 gi|315292492|gb|EFU51844.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           153-1]
 gi|315300495|gb|EFU59724.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           16-3]
 gi|315615793|gb|EFU96425.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 3431]
 gi|320175096|gb|EFW50209.1| tRNA:Cm32/Um32 methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320186421|gb|EFW61151.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri CDC 796-83]
 gi|323170193|gb|EFZ55846.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli LT-68]
 gi|323188348|gb|EFZ73640.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli RN587/1]
 gi|323377568|gb|ADX49836.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
 gi|323936272|gb|EGB32563.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323949192|gb|EGB45083.1| RNA methyltransferase [Escherichia coli H252]
 gi|323955773|gb|EGB51531.1| RNA methyltransferase [Escherichia coli H263]
 gi|323961348|gb|EGB56960.1| RNA methyltransferase [Escherichia coli H489]
 gi|323971054|gb|EGB66302.1| RNA methyltransferase [Escherichia coli TA007]
 gi|324008496|gb|EGB77715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           57-2]
 gi|324118258|gb|EGC12154.1| RNA methyltransferase [Escherichia coli E1167]
 gi|330912308|gb|EGH40818.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli AA86]
 gi|331039951|gb|EGI12171.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H736]
 gi|331043090|gb|EGI15230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M605]
 gi|331048815|gb|EGI20891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M718]
 gi|331054345|gb|EGI26372.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA206]
 gi|331059896|gb|EGI31873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA143]
 gi|331069261|gb|EGI40653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA280]
 gi|332092802|gb|EGI97871.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella boydii 3594-74]
 gi|332344407|gb|AEE57741.1| RNA methyltransferase [Escherichia coli UMNK88]
 gi|332754064|gb|EGJ84435.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 4343-70]
 gi|332754141|gb|EGJ84510.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-671]
 gi|332756262|gb|EGJ86613.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 2747-71]
 gi|332765884|gb|EGJ96095.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri 2930-71]
 gi|333000512|gb|EGK20091.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri VA-6]
 gi|333000896|gb|EGK20467.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-218]
 gi|333002330|gb|EGK21894.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-272]
 gi|333016153|gb|EGK35485.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-227]
 gi|333016404|gb|EGK35735.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-304]
          Length = 246

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|172037914|ref|YP_001804415.1| RNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171699368|gb|ACB52349.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. ATCC
           51142]
          Length = 247

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 4/231 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G VAR M N  L QL LV P     S++A+  + +   V++  +V   
Sbjct: 11  IVLVEPAGPLNVGSVARVMKNMGLNQLILVKPHCDRLSDEAKLMAVHGIDVLEKSQVVHT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EA+   H I ATT R+ +    +  P+EA   L    F   N  ++FG E  GL NEE
Sbjct: 71  IPEALQGCHRIIATTGRSLSLPTHLETPREALPWLLTENF---NTALLFGPEDRGLNNEE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +  +   +  P N  + SLN++QAV +  +E  + +    E  +     PA+   L  + 
Sbjct: 128 LNYAQRFVCIPANSDYSSLNLAQAVAVCSYELHQAAQNPIESKLDPSFEPASFEALEGYY 187

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            +LE  L + GY  P   K + L+    ++ +  L  EEV LLRGI+  +D
Sbjct: 188 QHLEAVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTNEEVALLRGILRQVD 237


>gi|325921164|ref|ZP_08183033.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
           ATCC 19865]
 gi|325548358|gb|EGD19343.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
           ATCC 19865]
          Length = 255

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 9/248 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    VF+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGISRLVLVAPERAL-DEDAYRRSAGAEDVLGDAPVFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P   A     +      V I+FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVALEELLPDAGARRALAKAGEPAEVAIVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------PATKG 190
            L +A +  P +P F SLN++ AV ++ +E     + + +       T       PA+  
Sbjct: 129 QLCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLAQLEAGQAEPAPAATTGALREGPASHA 188

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L      L  +L++  + +    +  M   L  + +R E+  +EV LLRGI+S   + +
Sbjct: 189 QLEGMFAQLGETLDDIDFHKGRAPESAMR-KLRRLLLRTEMSEQEVRLLRGILSDAQRMA 247

Query: 251 RQSSRRNN 258
             + R  N
Sbjct: 248 MLAKRAGN 255


>gi|78048137|ref|YP_364312.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036567|emb|CAJ24258.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 254

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 118/247 (47%), Gaps = 8/247 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + + +           ++ PA+  +
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGQAERAPAAAPGLRDGPASHAQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + + 
Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247

Query: 252 QSSRRNN 258
            + +  N
Sbjct: 248 LAKQAGN 254


>gi|284922482|emb|CBG35569.1| putative RNA methyltransferase [Escherichia coli 042]
          Length = 246

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETTHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|332748915|gb|EGJ79339.1| hypothetical protein SF434370_4804 [Shigella flexneri 4343-70]
          Length = 261

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTALAVA 191


>gi|123441400|ref|YP_001005387.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166234838|sp|A1JKQ0|TRMJ_YERE8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122088361|emb|CAL11152.1| putative SpoU-family rRNA methylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 257

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 7/243 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192
           +   +  ++ P NP + SLN++ AV ++ +E      +   ++   V+E+  P     +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLVDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K  + 
Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKY 243

Query: 253 SSR 255
             R
Sbjct: 244 PQR 246


>gi|218247147|ref|YP_002372518.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|218167625|gb|ACK66362.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8801]
          Length = 243

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G VAR M N  L +L LVNP+    SE+A+  + +   V++  +  S+
Sbjct: 8   IILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQAQRVSS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L EA+       ATT R R +  S+  PK A   +L   + S     +IFG E  GL+NE
Sbjct: 68  LPEALQGCQRAIATTGRPRTS-TSLETPKNALPWLLTPHLTS----ALIFGPEDRGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  +   +  P N  +PSLN++Q+V +  +E  + +             PA+   L  +
Sbjct: 123 ELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPQNVPPYPATEPASLDILEGY 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             +LE  L + GY  P     KM +    ++ R  L  EEV LLRGIV  +D  
Sbjct: 183 YQHLETFLLKIGYLHPHTATAKM-EKFRKLYNRANLSAEEVALLRGIVGHIDAL 235


>gi|293392940|ref|ZP_06637257.1| RNA methyltransferase [Serratia odorifera DSM 4582]
 gi|291424474|gb|EFE97686.1| RNA methyltransferase [Serratia odorifera DSM 4582]
          Length = 225

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 7/180 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     + LR+V+  D      AR  +  A  ++D+V+ F  
Sbjct: 5   IVLVAPARPENVGAAARAMKTMGFSSLRIVD-SDAHLQPAARWVAHGAGEILDAVQTFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+AD+ F  ATTAR+R  F     P+     L+ER        ++FGRE  GLTNEE
Sbjct: 64  LEQALADVDFTVATTARSRARFHYYCTPQALLEQLSERSQWMSQAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++      +S+  +V    +P   G  L  L
Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQ------LSALMSVAAPPSPTADGGQLQAL 177


>gi|157156588|ref|YP_001465924.1| putative RNA methyltransferase [Escherichia coli E24377A]
 gi|157163851|ref|YP_001461169.1| putative RNA methyltransferase [Escherichia coli HS]
 gi|170021638|ref|YP_001726592.1| putative RNA methyltransferase [Escherichia coli ATCC 8739]
 gi|188493074|ref|ZP_03000344.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|193070602|ref|ZP_03051540.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|254037414|ref|ZP_04871491.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|260858577|ref|YP_003232468.1| putative rRNA methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260871125|ref|YP_003237527.1| putative rRNA methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300918110|ref|ZP_07134722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300923539|ref|ZP_07139574.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|157069531|gb|ABV08786.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
 gi|157078618|gb|ABV18326.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E24377A]
 gi|169756566|gb|ACA79265.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
           8739]
 gi|188488273|gb|EDU63376.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|192956085|gb|EDV86550.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|226840520|gb|EEH72522.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|257757226|dbj|BAI28728.1| predicted rRNA methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257767481|dbj|BAI38976.1| predicted rRNA methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|284924581|emb|CBG37720.1| putative RNA methyltransferase [Escherichia coli 042]
 gi|300414694|gb|EFJ98004.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300420213|gb|EFK03524.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|320200480|gb|EFW75066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           EC4100B]
 gi|323157707|gb|EFZ43812.1| hypothetical protein ECEPECA14_0401 [Escherichia coli EPECa14]
 gi|323176309|gb|EFZ61901.1| hypothetical protein ECOK1180_5003 [Escherichia coli 1180]
 gi|323935195|gb|EGB31558.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323945815|gb|EGB41861.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019829|gb|EGB89048.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           117-3]
 gi|332346450|gb|AEE59784.1| tRNA/rRNA methyltransferase LasT [Escherichia coli UMNK88]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|323939780|gb|EGB35982.1| RNA methyltransferase [Escherichia coli E482]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|331661363|ref|ZP_08362287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA143]
 gi|331061278|gb|EGI33241.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA143]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|187924494|ref|YP_001896136.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           phytofirmans PsJN]
 gi|187715688|gb|ACD16912.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           phytofirmans PsJN]
          Length = 353

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 122/256 (47%), Gaps = 17/256 (6%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60
           P   +L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 86  PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 145

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ S  V   L +A++ +H+  A TAR R        P+ AA +  E+   G+ 
Sbjct: 146 ASGADDVLASAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIAREQALHGE- 204

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + ++FG ER GL+NE++   +A+   P NP + SLN++QAV ++ +E     + +     
Sbjct: 205 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTMYLSAGSGAA 264

Query: 181 KEQ-------------NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
             Q                A   E+ S   +LE +L    +  P    KK++  L  +F 
Sbjct: 265 AAQTAPQAAAGEGEAVGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 323

Query: 228 RPELMREEVFLLRGIV 243
           R  L REEV ++RGI 
Sbjct: 324 RSGLEREEVNIVRGIA 339


>gi|218708087|ref|YP_002415606.1| putative RNA methyltransferase [Escherichia coli UMN026]
 gi|293403074|ref|ZP_06647171.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|298378601|ref|ZP_06988485.1| RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300896760|ref|ZP_07115266.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|301024920|ref|ZP_07188532.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|218435184|emb|CAR16142.1| rRNA methyltransferase [Escherichia coli UMN026]
 gi|291429989|gb|EFF03003.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|298280935|gb|EFI22436.1| RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300359416|gb|EFJ75286.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300396295|gb|EFJ79833.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|238788189|ref|ZP_04631984.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           frederiksenii ATCC 33641]
 gi|238723776|gb|EEQ15421.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           frederiksenii ATCC 33641]
          Length = 256

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 6/242 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VKPDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGELL 193
           +   +  ++ P NP + SLN++ AV ++ +E     +   +    V+E+  P     +L 
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAPIVEEEEAPYPLVDDLE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
            F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K  +  
Sbjct: 185 RFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKYP 243

Query: 254 SR 255
            R
Sbjct: 244 QR 245


>gi|332978754|gb|EGK15446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Psychrobacter
           sp. 1501(2011)]
          Length = 300

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG  ARAM    LT L +V+PR     E + + +A A  V+D+  V  +
Sbjct: 30  IVMVNTTLPANIGSAARAMLTMGLTDLVIVDPRHPI-DEDSVAHAAGAKSVLDNCTVVDS 88

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+AD H ++A ++R R+  + V+ P  AA ++  R      V ++FGRE  GLTN+E
Sbjct: 89  LEQALADCHLVFAASSRQRHIPRPVVTPDNAAKLILSRPAEDTKVAVLFGREDRGLTNQE 148

Query: 137 IALSNAIISFPVNPLFPSLNISQAV 161
           +A+++  I    NP +P LN++ A+
Sbjct: 149 LAMADYHIQIDANPDYPVLNVASAI 173


>gi|293408092|ref|ZP_06651932.1| RNA methyltransferase [Escherichia coli B354]
 gi|291472343|gb|EFF14825.1| RNA methyltransferase [Escherichia coli B354]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|281181548|dbj|BAI57878.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|291285838|ref|YP_003502656.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O55:H7 str. CB9615]
 gi|293417877|ref|ZP_06660499.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|209748734|gb|ACI72674.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|290765711|gb|ADD59672.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O55:H7 str. CB9615]
 gi|291430595|gb|EFF03593.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|320638624|gb|EFX08329.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320649071|gb|EFX17653.1| putative RNA methyltransferase [Escherichia coli O157:H- str. H
           2687]
 gi|320660301|gb|EFX27805.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665397|gb|EFX32481.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|193065649|ref|ZP_03046715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194429193|ref|ZP_03061722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|209921870|ref|YP_002295954.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|218698239|ref|YP_002405906.1| putative RNA methyltransferase [Escherichia coli 55989]
 gi|256020154|ref|ZP_05434019.1| putative RNA methyltransferase [Shigella sp. D9]
 gi|260847293|ref|YP_003225071.1| putative rRNA methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|293476666|ref|ZP_06665074.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|192926722|gb|EDV81350.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194412808|gb|EDX29101.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|209915129|dbj|BAG80203.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218354971|emb|CAV02220.1| rRNA methyltransferase [Escherichia coli 55989]
 gi|257762440|dbj|BAI33937.1| predicted rRNA methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|291321119|gb|EFE60561.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|323163224|gb|EFZ49056.1| hypothetical protein ECE128010_0585 [Escherichia coli E128010]
 gi|323181944|gb|EFZ67356.1| hypothetical protein ECOK1357_4815 [Escherichia coli 1357]
 gi|324118355|gb|EGC12249.1| RNA methyltransferase [Escherichia coli E1167]
          Length = 228

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|194289317|ref|YP_002005224.1| tRNA:cm32/um32 methyltransferase (trmet(xm32)) [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223152|emb|CAQ69157.1| tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 272

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 10/236 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG----WPSEKARSSSANADCVIDSVRV 73
           +LV+     N+G VARA+       L LV+PR+      P   A +S   AD V+ +  +
Sbjct: 26  VLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPEVLRHPDAVAMAS--GADDVLAAAVI 83

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              +  A+A      A TAR R      L P+ AA    + +    +V  +FG ER+GL 
Sbjct: 84  VDGVDAALAGAALTVAMTARQREFGPPRLLPRAAAARARQTLGGSGDVAFVFGNERYGLP 143

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKG 190
           NE +   NA+   P NP + SLN++QAV L+ +E    + ++   +  N+     PAT  
Sbjct: 144 NEVVERCNAVTHIPANPAYASLNLAQAVQLVAYEMRLTLLDAAPDAGANIGYAGEPATAE 203

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           ++ +   +L+  LE  G+  P    +K++  L  +  R  L REEV +LRGI   +
Sbjct: 204 QVEAMFGHLQTGLEAIGFLDP-SNPRKLMTRLRRLLARSGLEREEVNILRGIAKHM 258


>gi|300905395|ref|ZP_07123164.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300947474|ref|ZP_07161658.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300955633|ref|ZP_07167988.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|301303509|ref|ZP_07209632.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|300317470|gb|EFJ67254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|300402764|gb|EFJ86302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300452908|gb|EFK16528.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300841236|gb|EFK68996.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|315255733|gb|EFU35701.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           85-1]
          Length = 228

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|323171419|gb|EFZ57066.1| hypothetical protein ECLT68_4062 [Escherichia coli LT-68]
          Length = 268

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|215489715|ref|YP_002332146.1| putative RNA methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966121|ref|ZP_07780347.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           2362-75]
 gi|215267787|emb|CAS12251.1| predicted rRNA methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289364|gb|EFR17258.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           2362-75]
          Length = 228

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|15834615|ref|NP_313388.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|168750958|ref|ZP_02775980.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756823|ref|ZP_02781830.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762757|ref|ZP_02787764.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766687|ref|ZP_02791694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776617|ref|ZP_02801624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781695|ref|ZP_02806702.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785048|ref|ZP_02810055.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|168797978|ref|ZP_02822985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|195937674|ref|ZP_03083056.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807856|ref|ZP_03250193.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812204|ref|ZP_03253533.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820258|ref|ZP_03260578.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397370|ref|YP_002273923.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325430|ref|ZP_03441514.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796399|ref|YP_003081236.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226760|ref|ZP_05941041.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255164|ref|ZP_05947697.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|13364839|dbj|BAB38784.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768001|gb|EDU31845.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014896|gb|EDU53018.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000755|gb|EDU69741.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356035|gb|EDU74454.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364086|gb|EDU82505.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366929|gb|EDU85345.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189375093|gb|EDU93509.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|189379506|gb|EDU97922.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|208727657|gb|EDZ77258.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733481|gb|EDZ82168.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740381|gb|EDZ88063.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158770|gb|ACI36203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748730|gb|ACI72672.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|209748732|gb|ACI72673.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|209748736|gb|ACI72675.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|217321651|gb|EEC30075.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595799|gb|ACT75160.1| RNA methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|320190480|gb|EFW65130.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC1212]
 gi|326345283|gb|EGD69026.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. 1125]
 gi|326346863|gb|EGD70597.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. 1044]
          Length = 228

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|333012280|gb|EGK31662.1| hypothetical protein SFK227_5376 [Shigella flexneri K-227]
          Length = 228

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +    D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGYGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|308187782|ref|YP_003931913.1| RNA methyltransferase [Pantoea vagans C9-1]
 gi|308058292|gb|ADO10464.1| putative RNA methyltransferase [Pantoea vagans C9-1]
          Length = 250

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 128/253 (50%), Gaps = 21/253 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A S +A A  VI   ++  +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGDAKIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAIA    +  T+AR+R+    +L  +E  +   + +  GQ   V ++FGRER GLTN
Sbjct: 66  LDEAIAGCSLVVGTSARSRSLPWPMLDARECGV---KSVEEGQQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE--- 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + S     +EQ +P  K E   
Sbjct: 123 EELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQS-----QEQASPPPKFEESP 177

Query: 192 ------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F  ++E  +   G+ R      +++  L  ++ R    R+E+ +LRG++S+
Sbjct: 178 YPLVDDLERFYQHMEQMMLNSGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSS 236

Query: 246 LDKFSRQSSRRNN 258
            +K   +    +N
Sbjct: 237 FEKRKNEKKEPDN 249


>gi|22125231|ref|NP_668654.1| ATP synthase beta subunit [Yersinia pestis KIM 10]
 gi|45442336|ref|NP_993875.1| SpoU family rRNA methylase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597177|ref|YP_071368.1| SpoU family rRNA methylase [Yersinia pseudotuberculosis IP 32953]
 gi|108808333|ref|YP_652249.1| SpoU family rRNA methylase [Yersinia pestis Antiqua]
 gi|108811402|ref|YP_647169.1| SpoU rRNA methylase family [Yersinia pestis Nepal516]
 gi|145599515|ref|YP_001163591.1| SpoU rRNA methylase family [Yersinia pestis Pestoides F]
 gi|149365357|ref|ZP_01887392.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
 gi|153947216|ref|YP_001400147.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|162420842|ref|YP_001605042.1| RNA methyltransferase [Yersinia pestis Angola]
 gi|165928245|ref|ZP_02224077.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166008335|ref|ZP_02229233.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212473|ref|ZP_02238508.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399653|ref|ZP_02305177.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421340|ref|ZP_02313093.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423345|ref|ZP_02315098.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470018|ref|ZP_02334722.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis FV-1]
 gi|186896271|ref|YP_001873383.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|218929957|ref|YP_002347832.1| putative SpoU family rRNA methylase [Yersinia pestis CO92]
 gi|229838482|ref|ZP_04458641.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895487|ref|ZP_04510658.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
 gi|229899051|ref|ZP_04514195.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901656|ref|ZP_04516778.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
 gi|270489848|ref|ZP_06206922.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
           D27]
 gi|294504542|ref|YP_003568604.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
 gi|81638848|sp|Q667X9|TRMJ_YERPS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122383052|sp|Q1C5G8|TRMJ_YERPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122384969|sp|Q1CKB1|TRMJ_YERPN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123776962|sp|Q7CJN8|TRMJ_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|166234839|sp|A4TMV6|TRMJ_YERPP RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|21958100|gb|AAM84905.1|AE013736_1 putative ATP synthase beta subunit [Yersinia pestis KIM 10]
 gi|45437200|gb|AAS62752.1| putative SpoU-family rRNA methylase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590459|emb|CAH22099.1| putative SpoU-family rRNA methylase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775050|gb|ABG17569.1| SpoU-family rRNA methylase [Yersinia pestis Nepal516]
 gi|108780246|gb|ABG14304.1| putative SpoU-family rRNA methylase [Yersinia pestis Antiqua]
 gi|115348568|emb|CAL21509.1| putative SpoU-family rRNA methylase [Yersinia pestis CO92]
 gi|145211211|gb|ABP40618.1| SpoU-family rRNA methylase [Yersinia pestis Pestoides F]
 gi|149291770|gb|EDM41844.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
 gi|152958711|gb|ABS46172.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353657|gb|ABX87605.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis
           Angola]
 gi|165919752|gb|EDR37085.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992717|gb|EDR45018.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206404|gb|EDR50884.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960829|gb|EDR56850.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052157|gb|EDR63565.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057515|gb|EDR67261.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186699297|gb|ACC89926.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681585|gb|EEO77679.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
 gi|229687996|gb|EEO80068.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694848|gb|EEO84895.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701293|gb|EEO89321.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
 gi|262362465|gb|ACY59186.1| putative SpoU-family rRNA methylase [Yersinia pestis D106004]
 gi|262366530|gb|ACY63087.1| putative SpoU-family rRNA methylase [Yersinia pestis D182038]
 gi|270338352|gb|EFA49129.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
           D27]
 gi|294355001|gb|ADE65342.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
 gi|320016041|gb|ADV99612.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 257

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 17/248 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI    +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGKATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK------- 189
           +   +  ++ P NP + SLN++ AV ++ +E     +  +  + ++ N P  +       
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYE-----VRVAYLDRQQANAPVEEEEEAPYP 179

Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++
Sbjct: 180 LVDDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIE 238

Query: 248 KFSRQSSR 255
           K  +   R
Sbjct: 239 KQDKYPQR 246


>gi|332281315|ref|ZP_08393728.1| RNA methyltransferase [Shigella sp. D9]
 gi|332103667|gb|EGJ07013.1| RNA methyltransferase [Shigella sp. D9]
          Length = 235

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 12  IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 71  LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 131 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 190

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 191 LLTTLAVA 198


>gi|53719858|ref|YP_108844.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei K96243]
 gi|167816505|ref|ZP_02448185.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei 91]
 gi|217420642|ref|ZP_03452147.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 576]
 gi|52210272|emb|CAH36251.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei K96243]
 gi|217396054|gb|EEC36071.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 576]
          Length = 303

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ A     +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAVASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|170023520|ref|YP_001720025.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|169750054|gb|ACA67572.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis YPIII]
          Length = 257

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 17/248 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI    +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGKATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK------- 189
           +   +  ++ P NP + SLN++ AV ++ +E     +  +  + ++ N P  +       
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYE-----VRVAYLDRQQANAPVEEEEEAPYP 179

Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++
Sbjct: 180 LVDDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIE 238

Query: 248 KFSRQSSR 255
           K  +   R
Sbjct: 239 KQDKYPQR 246


>gi|194443042|ref|YP_002043840.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401705|gb|ACF61927.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 228

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L + + D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADVLHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|170694941|ref|ZP_02886090.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
           C4D1M]
 gi|170140039|gb|EDT08218.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
           C4D1M]
          Length = 378

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 30/254 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV+PR        +A + ++ AD V+ S  V  
Sbjct: 112 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAMASGADDVLASAHVVP 171

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++ +H+  A TAR R        P+ AA +  +    G+ + ++FG ER GL+NE
Sbjct: 172 TLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE-IALVFGNERTGLSNE 230

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTP-------- 186
           ++   +A+   P NP + SLN++QAV ++ +E     + S +E N      P        
Sbjct: 231 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAEVNASASRAPQASTGSAA 290

Query: 187 -----------------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
                            A   E+ S   +LE +L    +  P    KK++  L  +F R 
Sbjct: 291 SAASTAAAASAEPAGPRAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFARS 349

Query: 230 ELMREEVFLLRGIV 243
            L REEV ++RGI 
Sbjct: 350 GLEREEVNIVRGIA 363


>gi|260869221|ref|YP_003235623.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257765577|dbj|BAI37072.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|323177343|gb|EFZ62931.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1180]
          Length = 245

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFSRARPESQELNILRGILASIEQ 238


>gi|323967980|gb|EGB63392.1| RNA methyltransferase [Escherichia coli M863]
 gi|323977285|gb|EGB72371.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|324113026|gb|EGC07002.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325496435|gb|EGC94294.1| methyltransferase [Escherichia fergusonii ECD227]
 gi|327252240|gb|EGE63912.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli STEC_7v]
          Length = 246

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+   TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|333011385|gb|EGK30799.1| hypothetical protein SFK272_0343 [Shigella flexneri K-272]
          Length = 261

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +    D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGYGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|152978538|ref|YP_001344167.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
 gi|150840261|gb|ABR74232.1| RNA methyltransferase, TrmH family, group 1 [Actinobacillus
           succinogenes 130Z]
          Length = 249

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 127/242 (52%), Gaps = 18/242 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    LT L LV P+    ++ A + SA A+ VI +  +  +
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLTNLYLVAPKSRIDAQ-AVALSAGAEDVIKNAVLVPS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             EA+AD   +  T+AR R+   S++ P+E      E       + I+FGRER GLTN+E
Sbjct: 66  FDEAVADCSLVIGTSARLRHLQSSLIEPRECGEKAIEAATKCGQIAIVFGRERVGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---------CMENSIVSSEKNVKEQNTP- 186
           +      ++ P NP + SLN++ AV L+ +E          M  S++   +N+ +  +P 
Sbjct: 126 LLKCRYHLNIPANPDYSSLNLAMAVQLVCYELRMAYLKVRTMPFSVI---ENMNQMPSPL 182

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  EL  F ++LE    +  +     + + ++  L  ++ R ++ + E+ +LRG++S +
Sbjct: 183 ATARELEYFYEHLERLYTQLNFI----QNQSVMHKLRRLYQRADIEKNELNILRGMLSAV 238

Query: 247 DK 248
           +K
Sbjct: 239 EK 240


>gi|300939394|ref|ZP_07154060.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300455722|gb|EFK19215.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
          Length = 228

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     + LR+V+ +          +  + D VID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-VIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|307132664|ref|YP_003884680.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
 gi|306530193|gb|ADN00124.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
          Length = 233

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 96/179 (53%), Gaps = 6/179 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM      ++R+V+         AR  +  +  ++D V VF  
Sbjct: 5   IILVAPARAENVGAAARAMKTMGFGRMRIVDS-TAHLEPAARWVAHGSGDILDGVDVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F     P +   VL E+     +  ++FGRE  GLTNEE
Sbjct: 64  LADALADIEFTVATTARSRARFHYYCEPAQLLSVLKEKRQWVSSAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           +AL++ +   P+   +PSLN+ QAV++  ++     + S  + V  + T A  G+L + 
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQ-----LASLMQVVAAEPTQAEFGQLAAL 177


>gi|218548031|ref|YP_002381822.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218355572|emb|CAQ88184.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 246

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  + V+   TP     +
Sbjct: 123 EELQKCHYHVAITANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|269140161|ref|YP_003296862.1| RNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267985822|gb|ACY85651.1| RNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304559994|gb|ADM42658.1| tRNA:Cm32/Um32 methyltransferase [Edwardsiella tarda FL6-60]
          Length = 245

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VRPDSQAIALSAGASDVIGNATIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
             +AIA    +  T+AR+R+    +L P+E            ++  V I+FGRER GLTN
Sbjct: 66  FDDAIAGCSLVVGTSARSRSLPWPMLEPRECG---QRSAMESEHAPVAIVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGE 191
           +E+   +  +  P NP + SLN++ AV ++ +E     +    +    V+E   P    +
Sbjct: 123 DELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLAD-D 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++DK
Sbjct: 182 LERFYAHLEQTLHHTGFIRE-KNPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237


>gi|300816031|ref|ZP_07096254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300531238|gb|EFK52300.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
          Length = 228

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL+ P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILIAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|257060219|ref|YP_003138107.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8802]
 gi|256590385|gb|ACV01272.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8802]
          Length = 243

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G VAR M N  L +L LVNP+    SE+A+  + +   V++  +  S+
Sbjct: 8   IILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQAQRVSS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L EA+       ATT R R +  S+  PK A   +L   + S     +IFG E  GL+NE
Sbjct: 68  LPEALQGCQRAIATTGRPRTS-TSLETPKNALPWLLTPHLTS----ALIFGPEDRGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  +   +  P N  +PSLN++Q+V +  +E  + +             PA+   L  +
Sbjct: 123 ELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPHNVPPYPATEPASLDILEGY 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             +LE  L + GY  P     KM +    ++ R  L  EEV LLRGIV  +D  
Sbjct: 183 YQHLESFLLKIGYLHPHTATAKM-EKFRKLYNRANLSAEEVALLRGIVGHIDAL 235


>gi|209748728|gb|ACI72671.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|320643913|gb|EFX13033.1| putative RNA methyltransferase [Escherichia coli O157:H- str.
           493-89]
          Length = 228

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQVHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|170683598|ref|YP_001746860.1| putative RNA methyltransferase [Escherichia coli SMS-3-5]
 gi|170521316|gb|ACB19494.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           SMS-3-5]
          Length = 228

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     + LR+V+ +          +  ++D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSSD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|73540818|ref|YP_295338.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
 gi|72118231|gb|AAZ60494.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
          Length = 314

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 11/239 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFS 75
           +LV+     N+G VARA+       L LV+PR+    E   A + ++ AD V+    +  
Sbjct: 52  VLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPGVREHPDAVAMASGADDVLAGAVIVD 111

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLT 133
           +++ A+       A TAR R      L P++AA    E + +  G  +  +FG ER+GL 
Sbjct: 112 SIEAALEGATQTVAMTARQREFGPPRLLPRDAAARGAESLAARAGDEIAFVFGNERYGLP 171

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC------MENSIVSSEKNVKEQNTPA 187
           N+ +    A+   P NP++ SLN++QAV L+ +E          +      N+     PA
Sbjct: 172 NDVVERCVAVTHIPANPVYASLNLAQAVQLIAYEMRLALLDRAQAAPDDSGNIGYAGEPA 231

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           T  ++ S   +L+  LE  G+  P    +K++  L  +  R  L REEV +LRGI   +
Sbjct: 232 TAEQVESMFGHLQQGLEAIGFLDPA-NPRKLMTRLRRLLARAGLEREEVNILRGIAKHM 289


>gi|320335161|ref|YP_004171872.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319756450|gb|ADV68207.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           maricopensis DSM 21211]
          Length = 261

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 13/241 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV P+   N+G  ARAM N   ++LRLV PR    S +AR+ + +A  ++++ RV+ 
Sbjct: 4   AVVLVSPKHPGNVGSAARAMLNMGASELRLVAPRCDHLSSEARALAVHAAGLLENARVYG 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+AD      T+AR R++    L P      L   + +     ++FG E  GL+++
Sbjct: 64  TLAEALADRDVAVGTSARERSD----LPPPRTPATLRPMVRAAARPALVFGPEETGLSSD 119

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++ L  A +  P    + SLN++QAVLL+ +E ++      +  V  +   A + E    
Sbjct: 120 DLQLCQATVRIPTGE-YASLNLAQAVLLVCYEFLQG----GDDTVVARKV-ADRAEYEGM 173

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLY-SIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
             +L  ++ E GY   V  +  M   L+ +   R +L   EV L+RG++      +RQ  
Sbjct: 174 YAHLYTTMLEVGYTDDVRGRHTM--RLWRAALDRAQLSTPEVRLVRGLLQQARWAARQPD 231

Query: 255 R 255
           R
Sbjct: 232 R 232


>gi|242277748|ref|YP_002989877.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           salexigens DSM 2638]
 gi|242120642|gb|ACS78338.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           salexigens DSM 2638]
          Length = 246

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75
           I+L   +  EN+G  ARAM N     L LV P   W  EKAR  ++     +++   +  
Sbjct: 7   IVLFGTKFPENVGSSARAMTNMGCENLTLVRPAS-WDMEKARPLATVKGRDIVEKALIAD 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D   +Y TTAR     K V+ P  AA ++ E++ +G+ V ++FG E  GLTN+
Sbjct: 66  ELSEALKDQTRVYGTTARTGGWRKGVMTPSTAAPLIVEQLRAGEKVAVVFGPEDRGLTND 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E  L + +I+ P +    SLN+SQAVL++++EC +N++
Sbjct: 126 ETQLCSRLINIPTSHENSSLNLSQAVLIILYECFKNAL 163


>gi|323190317|gb|EFZ75593.1| hypothetical protein ECRN5871_1472 [Escherichia coli RN587/1]
          Length = 228

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     + LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|16132220|ref|NP_418820.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89111111|ref|AP_004891.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083789|ref|YP_001733109.1| rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|218703151|ref|YP_002410780.1| putative RNA methyltransferase [Escherichia coli IAI39]
 gi|238903490|ref|YP_002929286.1| putative rRNA methyltransferase [Escherichia coli BW2952]
 gi|301330240|ref|ZP_07222898.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|312970097|ref|ZP_07784279.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           1827-70]
 gi|729917|sp|P37005|LAST_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
 gi|537243|gb|AAA97299.1| ORF_o228b [Escherichia coli str. K-12 substr. MG1655]
 gi|1790865|gb|AAC77356.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85677142|dbj|BAE78392.1| predicted rRNA methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|169891624|gb|ACB05331.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|218373137|emb|CAR21031.1| rRNA methyltransferase [Escherichia coli IAI39]
 gi|238863085|gb|ACR65083.1| predicted rRNA methyltransferase [Escherichia coli BW2952]
 gi|260450786|gb|ACX41208.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
 gi|300843746|gb|EFK71506.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|310337595|gb|EFQ02706.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           1827-70]
 gi|315138957|dbj|BAJ46116.1| putative RNA methyltransferase [Escherichia coli DH1]
          Length = 228

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     + LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|82779653|ref|YP_406002.1| putative RNA methyltransferase [Shigella dysenteriae Sd197]
 gi|309787372|ref|ZP_07681984.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
           dysenteriae 1617]
 gi|81243801|gb|ABB64511.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308924950|gb|EFP70445.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
           dysenteriae 1617]
          Length = 228

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E + D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVELLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|301024668|ref|ZP_07188315.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|299880311|gb|EFI88522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
          Length = 235

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     + LR+V+ +          +  + D +ID+++VF  
Sbjct: 12  IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 71  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 131 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 161


>gi|295676879|ref|YP_003605403.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1002]
 gi|295436722|gb|ADG15892.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1002]
          Length = 276

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV+PR  +     +A + ++ AD V+ SV V  
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAMASGADDVLASVHVVP 84

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L +A+A +H+  A TAR R        P+ AA   +     G+ + ++FG ER GL+NE
Sbjct: 85  SLADALAGVHWSIALTARLREYGPPQWTPRAAAAAAHAEALHGE-IALVFGNERTGLSNE 143

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--------- 186
           ++   +AI   P NP + SLN++QAV ++ +E +  + + +++       P         
Sbjct: 144 DVERCSAIAHIPANPAYSSLNLAQAVQVLAYE-LRTAYLGTDQTTDGAPAPGARIAPAES 202

Query: 187 -------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                  A   E+ S   +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 203 AGTRAQMAASDEIESMFVHLESALVALEFLDP-SNPKKLMSRLRRLFARSGLEREEVNIV 261

Query: 240 RGIV 243
           RGI 
Sbjct: 262 RGIA 265


>gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297]
 gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297]
          Length = 254

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 14/244 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM       L LV P+  +PS+ A + ++ A  +++   V   
Sbjct: 16  VVLVHTSHSGNIGSAARAMKTMGFHNLVLVAPKT-FPSDDAIAMASGATDILEQAVVVET 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPK---EAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+EA+AD  F+   +AR+RN    ++ P+   E A+ L +       V ++ GRER GLT
Sbjct: 75  LEEAVADCGFVVGASARSRNLPWPLVHPRQMAEQALALPDNT----RVALVLGRERSGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----NVKEQNTPAT 188
           N+E+A  +  ++ P NP + SLN++ AV ++ +E   ++++S+ +      V+    PAT
Sbjct: 131 NDELARCHCHVNIPANPDYSSLNVAAAVQVLCYELRMSAVLSTGEETPLWGVEWDQPPAT 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            G + S   + E  L +  +  P    + ++  +  +  + +    E  +LRG++S + K
Sbjct: 191 AGAMESLFAHWERVLVDIDFLDPT-NPRTLMSKIRRLMAKAQPDEVEANILRGMLSHVQK 249

Query: 249 FSRQ 252
             R+
Sbjct: 250 HLRK 253


>gi|331650890|ref|ZP_08351918.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
 gi|331051344|gb|EGI23393.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
          Length = 228

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     + LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|323955197|gb|EGB50970.1| RNA methyltransferase [Escherichia coli H263]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVFKT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PS N+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSFNLGQAVMVYCYQ 154


>gi|296104218|ref|YP_003614364.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058677|gb|ADF63415.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 241

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 9/240 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +   +   V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVSEAEQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGEL 192
           +E+   +  ++   NP + SLN++ AV ++ +E     + + EK    KE+       +L
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKVAEPKEETAYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE +L   G+ R     + M + L  +F R     +E+ +LRGI++++++ +++
Sbjct: 183 ERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRLFTRARPESQELNILRGILASIEQKNKE 241


>gi|309704911|emb|CBJ04264.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
          Length = 206

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 100/188 (53%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPTKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|288549938|ref|ZP_05968701.2| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317270|gb|EFC56208.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
           cancerogenus ATCC 35316]
          Length = 263

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 128/236 (54%), Gaps = 8/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 29  IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 87

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135
           L EA+A    +  T+AR+R     +L P+E  +  ++E + +   V ++FGRER GLTN+
Sbjct: 88  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAVQA--PVALVFGRERVGLTND 145

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPATKGEL 192
           E+   +  ++   NP + SLN++ AV ++ +E     + + EK     +E+       +L
Sbjct: 146 ELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKARTEPQEEKAYPLVDDL 205

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 206 ERFYGHLEQTLLSTGFIRQ-DHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 260


>gi|331684182|ref|ZP_08384778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H299]
 gi|320196373|gb|EFW70997.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli WV_060327]
 gi|331079134|gb|EGI50336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H299]
          Length = 246

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E  +  + + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQAEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|159903675|ref|YP_001551019.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211]
 gi|159888851|gb|ABX09065.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 246

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 7/230 (3%)

Query: 17  IILVDPQLGE-NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++LV+P LGE N+G VAR   NF + QLRLV+PR        +  +     ++++ ++ S
Sbjct: 10  VVLVEP-LGEINLGSVARLCKNFGINQLRLVSPRCDPLDITTKKMALKGSDLLENAQIHS 68

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL EAI D   + AT  R  ++ +  L   E A+    +  S   + IIFGRE  GL+N+
Sbjct: 69  NLLEAIDDCVRVVATCGR-IDHGEIPLHSSETALNWLLQGSSKDPIAIIFGREDRGLSNQ 127

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELL 193
           E+ L+  +I+ P +  +PSLN+S AV +++ + +  S     S KN KE ++ +T  EL 
Sbjct: 128 ELQLAQKVITLPSSLTYPSLNLSHAVAIILHDLIRYSQKYEYSIKN-KELHSLSTPKELS 186

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           + LD  E  L E G+      K +M   +  +  R E+  EEV L+RGI+
Sbjct: 187 NCLDQTEDFLLEIGFLHKHTSKSRM-SKIKGLLQRAEVRSEEVALIRGIL 235


>gi|260856626|ref|YP_003230517.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257755275|dbj|BAI26777.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|323156188|gb|EFZ42347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli EPECa14]
          Length = 245

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           EE+   +  ++   NP + SLN++ A  ++ +E     + + E  + V+ + TP     +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAAQVIAYEVRMAWLATQENGEQVEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|88703677|ref|ZP_01101393.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
 gi|88702391|gb|EAQ99494.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
          Length = 254

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 6/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    NIG VARAM    L +L LV P + +P E+A   +  A  V++S  V   
Sbjct: 8   IVLVEPSHPGNIGAVARAMKTMGLGRLVLVAP-EQFPHEEATWRAVWARDVLESAVVVDT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIA+  F+  T AR++     VL P+ +A+ ++     G+ V I+FGRE  GL+NEE
Sbjct: 67  LDEAIAECGFVVGTCARDQRLPWPVLDPRRSALEVSANSRRGE-VAILFGREDNGLSNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTP-ATKGELL 193
           +   N  ++ P +  + SLN++ AV ++ +E   + N     + +  E + P A++  + 
Sbjct: 126 LMRCNLHLAIPTSDAYSSLNLAMAVQIVCYELHMLANGDALPQTSNAEWDEPLASQENIE 185

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  +LE +L + G+  P    +K++  L  ++ R  +   E+ +LRGI++   K
Sbjct: 186 RFYVHLEETLSQIGFLNPA-APRKLMPRLRRLYNRLGMDEMELNILRGILTETQK 239


>gi|126659046|ref|ZP_01730187.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
 gi|126619703|gb|EAZ90431.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 117/241 (48%), Gaps = 4/241 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G VAR M N +L QL LV P      E+AR  + +   V++  +V   
Sbjct: 11  IVLVEPAGPLNVGSVARVMKNMSLNQLFLVKPHCDRLGEEARLMAVHGIDVLEKSQVVDT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + +A+   H I ATT R+ +    +  P+ A   L   +    N  +IFG E  GL NEE
Sbjct: 71  IPQALQGCHRIIATTGRSLSLPTHLETPRNALPWL---LTDDLNTALIFGPEDRGLNNEE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           ++ +   +  P N  + SLN++QAV +  +E  + +    E        PA    L  + 
Sbjct: 128 LSYAQRFVCIPANSDYSSLNLAQAVAVCSYELYQVAQNPLENTSNPSFDPAAFEALEGYY 187

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
            +LE  L + GY  P   K + L+    ++ +  L  EEV LLRGI+  +D   +  S +
Sbjct: 188 QHLEAVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTTEEVALLRGILRQVDWACQDFSSK 246

Query: 257 N 257
           N
Sbjct: 247 N 247


>gi|194439268|ref|ZP_03071347.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|194421750|gb|EDX37758.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|315616225|gb|EFU96844.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           3431]
 gi|323970852|gb|EGB66104.1| RNA methyltransferase [Escherichia coli TA007]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     + LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|323526554|ref|YP_004228707.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383556|gb|ADX55647.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1001]
          Length = 277

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 17/241 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV+PR        +A + ++ AD V+ S  +  
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAMASGADDVLASAHIVP 84

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++ +H+  A TAR R        P+ AA +  +    G+ + ++FG ER GL+NE
Sbjct: 85  TLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE-IALVFGNERTGLSNE 143

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-------------EKNVKE 182
           ++   +A+   P NP + SLN++QAV ++ +E     + S                  + 
Sbjct: 144 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAKANAPANPAPQAAAPAEP 203

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A   E+ S   +LE +L    +  P    KK++  L  +F R  L REEV ++RGI
Sbjct: 204 SGPRAASDEIESMFSHLERALVALEFLDPA-NPKKLMSRLRRLFARSGLEREEVNIVRGI 262

Query: 243 V 243
            
Sbjct: 263 A 263


>gi|307132079|ref|YP_003884095.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
 gi|306529608|gb|ADM99538.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A S SA A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNATIVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +A+     +  T+AR+R     +L P+E  +     +   Q+  V ++FGRER GLTN
Sbjct: 66  LDQALEGCGLVVGTSARSRTLPWPMLEPRECGV---RSVQEAQHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGEL 192
           EE+   +  ++ P NP + SLN++ AV ++ +E     +   ++     E++      +L
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQRGEPAHEESPYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L   G+ R    + ++++ L  +F R     +E+ +LRGI+S + K
Sbjct: 183 ERFYQHLEETLLHTGFIRQ-PHQGQVMNKLRRLFTRARPENQELNILRGILSAITK 237


>gi|186476154|ref|YP_001857624.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184192613|gb|ACC70578.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phymatum
           STM815]
          Length = 276

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV+PR  D     +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVADVKNDPEAIAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++   +  A TAR R      LAP+ AA    E    G ++ ++FG ER GL+N+
Sbjct: 93  TLADALSGASWSLALTARAREYGPPQLAPRAAATQAREHAAHG-DIALVFGNERTGLSND 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKGEL 192
           ++   +A+   P NP + SLN+SQA+ ++ +E     +V   +++         A   E+
Sbjct: 152 DVERCSALAHIPANPAYSSLNLSQAIQVLSYELRMAYLVEGDTADPASGSAGALAASDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMYVHLENALIALDFLDP-GNPKKLMSRLRRLFARSGLEREEVNIVRGIA 261


>gi|308048484|ref|YP_003912050.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
 gi|307630674|gb|ADN74976.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
          Length = 226

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           + ILV P  GEN+G  ARAM     ++LR+V   D   SE+A   +  +  +++    F+
Sbjct: 5   IFILVSPARGENVGAAARAMKTMGFSRLRVVGS-DAHKSEQASWVAHGSGTILEEAESFA 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+AD+    ATTAR R + + +  P EAA  +     S   V ++FG E  GL+NE
Sbjct: 64  TLAEALADVDLSLATTARRRGDKRRLHTPAEAAQQVRALGNSVNTVAVVFGCEESGLSNE 123

Query: 136 EIALSNAIISFP-VNPLFPSLNISQAVLLMVWE 167
           ++AL + + + P VNP +PSLN+ QA++L  +E
Sbjct: 124 DLALVDLLTTIPLVNP-YPSLNLGQAIMLYAYE 155


>gi|30065639|ref|NP_839810.1| putative RNA methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|30043903|gb|AAP19622.1| hypothetical protein S4706 [Shigella flexneri 2a str. 2457T]
          Length = 228

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 99/188 (52%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV +  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVKVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|170733439|ref|YP_001765386.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|169816681|gb|ACA91264.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           cenocepacia MC0-3]
          Length = 289

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA++ +H+  A TAR R      LAP+ AA   + ++ +G ++ ++FG ER GL NE
Sbjct: 106 TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGAG-DIALVFGNERTGLANE 164

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E +   S +   E  T A   E
Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEAGTLAQSDE 224

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 225 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 275


>gi|261403375|ref|YP_003247599.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           vulcanius M7]
 gi|261370368|gb|ACX73117.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           vulcanius M7]
          Length = 227

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 96/154 (62%), Gaps = 7/154 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+ G N+G +AR M NF+  +LR+V  ++    E A   + +A  ++++ + +  
Sbjct: 4   VVLVNPKYGGNVGSIARVMMNFDFKELRIVGSKEILNKE-AYMMAVHAKDILNNAKFYDT 62

Query: 77  LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +EAI DL F+ AT+     +RN  +  + PKE A+ L E    G NVGI+FGRE  GLT
Sbjct: 63  FEEAIKDLDFVIATSGARGGDRNLKRVPITPKELALQLLE--IEG-NVGIVFGREDDGLT 119

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           NEE+   + ++S P + L+P +N+S AV ++++E
Sbjct: 120 NEELEKCDLLVSIPTSNLYPIMNLSHAVAVILYE 153


>gi|163857771|ref|YP_001632069.1| methyltransferase [Bordetella petrii DSM 12804]
 gi|163261499|emb|CAP43801.1| probable methyltransferase [Bordetella petrii]
          Length = 255

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 14/242 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I+V P    N+G  ARA+       L LV PR  D     +A + ++ A  V++  RV +
Sbjct: 11  IMVQPSHPGNVGSAARAIKTMGFADLVLVEPRYPDMTSQPEAVALASGATDVLERARVCA 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133
            L+EA+A +   +A TAR R+        ++AA + ++ + +  +    ++ G ER GLT
Sbjct: 71  TLEEALAPVTLAFALTARVRDLGPPPCDIRQAAELASQHLAAPGSGCAAVVLGTERAGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-----CMENSIVSSEKNVKEQNTP-- 186
           N +IAL   I   P NP + SLN++QA+ L  WE        N       +  +Q  P  
Sbjct: 131 NAQIALCQRICHIPANPEYSSLNVAQALQLAAWELRYALLRANGATLLPASTAQQPDPGA 190

Query: 187 --ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             AT   + +FL + + +L    +  P    KK++  +  +F R  L R+E+ +LRG+ +
Sbjct: 191 ALATSEAVQAFLAHWQEALVHVQFLDPAH-PKKLMPRMRHLFSRSALTRDEIDMLRGVCT 249

Query: 245 TL 246
            +
Sbjct: 250 AM 251


>gi|332307520|ref|YP_004435371.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174849|gb|AEE24103.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 240

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 10/239 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+QL LV+P    P  KA + +A A  V+ + ++ S 
Sbjct: 7   IVLVNTSHTGNIGSTARAMKTMGLSQLVLVDPVS-PPDGKASALAAGAGDVLANAKIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133
           L EA+AD   +  T+AR+R     +L P+       E++ S      V ++FGRE  GL+
Sbjct: 66  LAEAVADCGLVVGTSARSRTLSWPMLEPRGCG----EKLVSEVPKYPVALVFGRENNGLS 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N+E+   +  +  P NP + SLN++ AV  + +E     +  + +   ++  P  + +L 
Sbjct: 122 NDELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRRESVQEEYPLAE-DLE 180

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            F  +LE +L +  +  P +    ++  L  +F R     +E+ +LRGI+++++K S++
Sbjct: 181 GFYSHLEQTLFKTNFIIP-KHPGMVMTKLRRLFNRARPETQELNILRGILASIEKTSKE 238


>gi|120598674|ref|YP_963248.1| RNA methyltransferase [Shewanella sp. W3-18-1]
 gi|146293248|ref|YP_001183672.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
 gi|120558767|gb|ABM24694.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp.
           W3-18-1]
 gi|145564938|gb|ABP75873.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           putrefaciens CN-32]
 gi|319426238|gb|ADV54312.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           putrefaciens 200]
          Length = 241

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L L  PR   P  ++ + +A A  ++  +    +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRV-EPDGQSIALAAGASDILKHLVKVDS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  GL+NEE
Sbjct: 66  LAEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTESVTGP-VAIVFGRENHGLSNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      ++ P NP + SLN++QAV ++ +E     +   E   +    P    +   F 
Sbjct: 125 LQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAGIESAQEPTEYPLAADQ-ERFF 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK
Sbjct: 184 VHLENTLFSTGFIIK-NHPGQVMTKLRRLFSRARIESQEMNILRGILTSIDK 234


>gi|325916981|ref|ZP_08179223.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536832|gb|EGD08586.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 293

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 8/247 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+ +  +F  L
Sbjct: 49  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLGNAPLFDTL 107

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 108 SEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDEL 167

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------VKEQNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + +             ++ PA+  +
Sbjct: 168 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGGAEPVPAAASGLRDGPASHAQ 227

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + + 
Sbjct: 228 LEGMFGQLGETLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 286

Query: 252 QSSRRNN 258
            + R  N
Sbjct: 287 LAKRAGN 293


>gi|254247820|ref|ZP_04941141.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
           PC184]
 gi|124872596|gb|EAY64312.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
           PC184]
          Length = 289

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA++ +H+  A TAR R      LAP+ AA   + ++ +G ++ ++FG ER GL NE
Sbjct: 106 TLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGTG-DIALVFGNERTGLANE 164

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E +   S +   E  T A   E
Sbjct: 165 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPQAEVGTLAQSDE 224

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 225 IERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 275


>gi|307545466|ref|YP_003897945.1| SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
 gi|307217490|emb|CBV42760.1| putative SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
          Length = 244

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 9/225 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    LT L LVNPR  +P  +A   +A A+ V+D  RV ++
Sbjct: 7   IVLVQTYHPGNIGASARAMKTMGLTDLVLVNPR-CFPDPEASRLAAGAEDVVDQARVVTS 65

Query: 77  LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L EA+AD   +   +AR R+        P E A  L +       V ++FGRER+GLTN+
Sbjct: 66  LSEAVADCVQVVGASARLRSYPLPHYDEPAEMATSLVDNAREAP-VALVFGRERFGLTND 124

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM---ENSIVSSEKNVKEQNTP-ATKGE 191
           EI   +  +S P NP +  LN+SQAV ++ +E          S  ++ +  + P  T+ +
Sbjct: 125 EIRDCSHQVSIPANPDYGVLNLSQAVQVLAYETFGAWRRLPDSDYQHPRHASVPLPTRQQ 184

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
           L  F D+L   ++  G+    +   +  + L ++F R +  R ++
Sbjct: 185 LGHFHDHLSRVMQASGFI--TQPHARTEEQLRALFDRAQPTRRDI 227


>gi|157147586|ref|YP_001454905.1| putative RNA methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157084791|gb|ABV14469.1| hypothetical protein CKO_03386 [Citrobacter koseri ATCC BAA-895]
          Length = 228

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM       +R+V+ +          +  +AD +ID++ V+  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFGDMRIVDSQAHLEPATRWVAHGSAD-IIDNISVYPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  F     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAEALHDVDFTVATTARSRAKFHYYATPAELLPLLQEKSQWMNHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|218778250|ref|YP_002429568.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759634|gb|ACL02100.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 251

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 132/245 (53%), Gaps = 9/245 (3%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   I+L +PQ+ ENIG  ARAM N  L +L +V P+     +    ++A A  +IDS+ 
Sbjct: 8   KKIAIVLCEPQIPENIGGTARAMANMGLERLIVVKPKSLAQEKIYPMATAGARHLIDSME 67

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWG 131
           V  +LK A+ + +++  TTAR  ++ K++     AA +++    +G+N V ++FGRE  G
Sbjct: 68  VVDDLKTALKEFNWVVGTTARLGSHRKAMTVENMAAKLIS---MTGENRVALVFGREDRG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+ E++ L + +++      F SLN++QAVLL+ +E  +     S+K  +     A K +
Sbjct: 125 LSTEDVRLCHQLVNIRTAG-FSSLNLAQAVLLVCYELFK---AGSDKPRESTPKLANKFD 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L +  D L   L    +  P E  +  +D++   F R  L   +V ++RGI   +D ++ 
Sbjct: 181 LEAMYDQLSELLVRIDFINP-ENPEHWMDNIRRFFTRHPLTARDVKIVRGICRQVDWYTE 239

Query: 252 QSSRR 256
           +  ++
Sbjct: 240 RRFKK 244


>gi|237732512|ref|ZP_04562993.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
 gi|226908051|gb|EEH93969.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
          Length = 243

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 12/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI S ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGSAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVSEATNSPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKG 190
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E     + +E   P    
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQESDKTIDYEEAEYPLVD- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F  +LE +L   G+ R     + M + L  +F R     +E+ +LRGI++++++
Sbjct: 182 DLERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|283832087|ref|ZP_06351828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
           youngae ATCC 29220]
 gi|291071712|gb|EFE09821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
           youngae ATCC 29220]
          Length = 243

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI S ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGSAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVSEATNSPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---GE 191
           EE+   +  ++   NP + SLN++ AV ++ +E     + + E +   +   A      +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQEGDKTAEYAEAEYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R     + M + L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|311278537|ref|YP_003940768.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
 gi|308747732|gb|ADO47484.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
          Length = 242

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 130/241 (53%), Gaps = 10/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +A+A    +  T+AR+R     +L P+E  +   + +   ++  V ++FGRER GLTN
Sbjct: 66  LDDALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAEHAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TP-ATKGE 191
           +E+   N  ++   NP + SLN++ AV ++ +E     + + E   K ++  TP     +
Sbjct: 123 DELQKCNYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQENGDKAEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++ ++
Sbjct: 183 LERFYGHLEQTLLATGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGILASIEQKNK 241

Query: 252 Q 252
           +
Sbjct: 242 E 242


>gi|299067213|emb|CBJ38410.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CMR15]
          Length = 259

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 113/241 (46%), Gaps = 13/241 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
           +LV+     N+G  ARA+      +     LV PR  D      A + ++ AD V+   R
Sbjct: 1   MLVETSHPGNVGSTARALKTMGFGESGSYVLVRPREPDAQSHPDAVAMASGADDVLADAR 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V  +  EA+A    + A TAR R      + P+ AA  +   + + G  V  +FG ER+G
Sbjct: 61  VVDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATVAFVFGNERYG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185
           L NE +   + +   P NP + SLN+SQAV L+ +E     +  +         V     
Sbjct: 121 LPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLAETGTGDTRVDGVGFVGE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  ++     +LE  L E G+  P +  KK++  L  +F R +L  EEV +LRGI   
Sbjct: 181 PATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMSRLRRLFARTQLEAEEVNILRGIAKR 239

Query: 246 L 246
           +
Sbjct: 240 M 240


>gi|257093601|ref|YP_003167242.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046125|gb|ACV35313.1| RNA methyltransferase, TrmH family, group 1 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 265

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 7/236 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L       NIG  ARAM    +++L LVNP+  +P ++A + +A AD ++   +V + 
Sbjct: 19  IVLSHTSHPGNIGAAARAMKTMGVSRLVLVNPKR-FPDDEAVARAAGADDILGQAQVCTT 77

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+AD  ++ A +AR+RN     L  ++AA+ L  R  +G+ V ++FG E  GL+N E
Sbjct: 78  LDAALADTVWVCAVSARHRNLGPPALPARQAAVDLVARAGAGE-VALLFGNETAGLSNAE 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGEL 192
           +      +  P +P + SLN++ AV L+ +E    +   S   V       + PA   ++
Sbjct: 137 VQRCRQTVFIPADPGYTSLNLAAAVQLLCYELRLAAFAGSPPVVTRTMPFASPPAVHQDV 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE  +    +  P E+ +++L  L  +F R EL  +E+ +LRG++  +++
Sbjct: 197 ERFYAHLERVMVASDFLDP-ERPRRLLPKLRRLFGRTELESDEINILRGLLDAVER 251


>gi|323499943|ref|ZP_08104902.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
           21326]
 gi|323315184|gb|EGA68236.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
           21326]
          Length = 241

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L LV+P+     E+A + +A A  + ++  + S+
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSI-DEQALALAAGASDIAENATIVSS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+AD   +  ++AR+R     +L P+E      + +  GQN  V ++FGRER GLTN
Sbjct: 66  LAEAVADCALVVGSSARSRTLEWPMLEPRECG---QKFVEEGQNAPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGEL 192
           +E+   +  +  P NP + SLN++ AV  + +E     +   ++    +EQ+      EL
Sbjct: 123 DELQTCHFHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLEKEQQQYTPQEQSEYPRHKEL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F ++LE  +     F   E+  K+++ L  +F R     +E+ +LRGI+++++K
Sbjct: 183 ELFFEHLE-KVAVSTQFISEEQPGKVMNKLRRLFNRARPEAQELNILRGILTSIEK 237


>gi|238898810|ref|YP_002924492.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466570|gb|ACQ68344.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 246

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 4/233 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM    L+ L LVNP    P  K  S +A A  +I+   +   
Sbjct: 10  IVLVETSHPGNIGSVARAMKTMGLSDLYLVNPSKK-PDAKTISLAAGAADLIERSTLVDT 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+A+ + +   +AR+R      + PK+ A+    +  SG  V ++FG ER GL+N E
Sbjct: 69  LDTALAECNLVIGASARSRTLSWPEIDPKQCALYSLHQAESGP-VALVFGCERTGLSNLE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPATKGELLSF 195
           +   +  +  P NP + SLN++ AV ++ +E     + S SE  + +        EL  F
Sbjct: 128 LQKCHYHVVIPTNPEYSSLNLAMAVQILSYEIRLAYLKSASESQISKIPNYPLVNELECF 187

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +LE  L   G+  P  + ++M+  L  +F R  L  +E+ +LRGI++ + K
Sbjct: 188 YQHLEEVLLHVGFIHPA-RPRQMMHQLRRLFTRARLENKELNILRGILTCIKK 239


>gi|300691860|ref|YP_003752855.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
 gi|299078920|emb|CBJ51581.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
          Length = 286

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRD-GWPSE-KARSSSANADCVIDSVR 72
           +LV+     N+G  ARA+      +     LV PR+ G  S   A + ++ AD V+   R
Sbjct: 29  VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPGAQSHPDAVAMASGADDVLAGAR 88

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V  +  EA+A    + A TAR R      + P+ AA  +   + S G  V  +FG ER+G
Sbjct: 89  VVDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLASPGATVAFVFGNERFG 148

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185
           L NE +   + +   P NP + SLN+SQAV L+ +E     +  +         V     
Sbjct: 149 LPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRVDGVGFVGE 208

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  ++     +LE +L E G+  P +  KK++  L  +F R +L  EEV +LRGI   
Sbjct: 209 PATAEQIDGMFAHLERALVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267

Query: 246 L 246
           +
Sbjct: 268 M 268


>gi|325970709|ref|YP_004246900.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324025947|gb|ADY12706.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 247

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 18/239 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LVD Q G NIG   RAM    +T+L LV  R+ +   + R+ + +A  V D+ + F  
Sbjct: 12  IVLVDTQDGANIGSTCRAMKTMGITRLVLVGERE-YDENRVRTLALHASDVWDNAKRFPT 70

Query: 77  LKEAIADLHFIYATTARNRNNFK--SVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLT 133
           LKEA+A      A T R R  F+  S L+P + A  + +   +GQ  V I+FGRE  GLT
Sbjct: 71  LKEALAQSVLSVAAT-RRRGKFRKNSALSPLQLASTIQQ---TGQGLVSIVFGRESDGLT 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL- 192
           ++E+A  + +++ P +  FPSLN+SQAV ++ +     ++  + K    +  P T+    
Sbjct: 127 DDEVAQCSQVVTIPTSDQFPSLNLSQAVQIVTF-----TLFDTIKTYPVEANPVTQDRCE 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            + L   E +L+E GYF+  ++K      L   F+R  L   E+   + +V    K SR
Sbjct: 182 KAALASCE-ALDEIGYFKLAQEKLWTFRFLRDTFVRAGLTESEI---QKMVKVFVKMSR 236


>gi|16767841|ref|NP_463456.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16423167|gb|AAL23415.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|312915692|dbj|BAJ39666.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 228

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +  E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTARSRAKFHYYASHAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|242238023|ref|YP_002986204.1| RNA methyltransferase [Dickeya dadantii Ech703]
 gi|242130080|gb|ACS84382.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
          Length = 232

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 7/180 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM       LR+V+ +       AR  +  +  +++  + FS+
Sbjct: 5   IILVAPARAENVGAAARAMKTMGFECLRIVDSQ-AHREPAARWVAHGSSDILERAQTFSS 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P++   V+ E+    ++V ++FGRE  GLTNEE
Sbjct: 64  LADALVDVDFTVATTARSRARFHYYSSPEQVLGVIREKQQWVKSVALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++      +SS   V     PA     LS L
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQ------LSSLMQVTAGAAPAADSGQLSAL 177


>gi|156932916|ref|YP_001436832.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
 gi|166234836|sp|A7MGX5|TRMJ_ENTS8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|156531170|gb|ABU75996.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
          Length = 245

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNASIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135
           L EA+A    +  T+AR+R     +L P+E  +  ++E   +   V I+FGRER GLTN+
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEATHA--PVAIVFGRERVGLTND 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTP-ATKGE 191
           E+   +  ++   NP + SLN++ AV ++ +E     + S +       E+ TP     +
Sbjct: 124 ELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLASQDAQTPAPGEEETPYPLVDD 183

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           L  F  +LE  L   G+ RP     ++++ L  +F R     +E+ +LRG++++++
Sbjct: 184 LERFYGHLEQVLLSTGFIRP-NHPGQVMNKLRRLFTRARPESQELNILRGMLASIE 238


>gi|323960117|gb|EGB55762.1| RNA methyltransferase [Escherichia coli H489]
          Length = 228

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GL NEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLANEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|238921055|ref|YP_002934570.1| hypothetical protein NT01EI_3185 [Edwardsiella ictaluri 93-146]
 gi|238870624|gb|ACR70335.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 245

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +  +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-RPDSQAIALSAGASDVIGNATIVGS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
             +AI     +  T+AR+R+    +L P+E            ++  V I+FGRER GLTN
Sbjct: 66  FDDAIVGCSLVVGTSARSRSLPWPMLEPRECG---QRSAMESEHAPVAIVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGE 191
           +E+   +  +  P NP + SLN++ AV ++ +E     +    +    V+E   P    +
Sbjct: 123 DELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLAD-D 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++DK
Sbjct: 182 LERFYAHLEQTLHHTGFIRE-KSPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237


>gi|198244887|ref|YP_002218469.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197939403|gb|ACH76736.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 228

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+ +          +  + D +ID++ VF  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTA +R  F    +P E   +L E+    ++  ++FGRE  GLTN+E
Sbjct: 64  LADALHDVDFTVATTACSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|291296222|ref|YP_003507620.1| RNA methyltransferase TrmH family, group 1 [Meiothermus ruber DSM
           1279]
 gi|290471181|gb|ADD28600.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus ruber DSM
           1279]
          Length = 257

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 121/251 (48%), Gaps = 14/251 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--------SANADCVI 68
           I+LV  Q   NIG  ARAM NF ++ L LV P      + AR          + +A+ V+
Sbjct: 9   IVLVGSQEPMNIGAAARAMQNFGISDLWLVAPEPRVREDLARHPGGSLAYRLAVHAEDVL 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGR 127
           D +RV   L EA+AD   +  TT R R  +   V+ P+  A+ + +    G+ V ++FGR
Sbjct: 69  DRMRVVDTLPEAVADARLVVGTTVREREIYTGPVVGPRPMALRVAQVAPRGR-VAVVFGR 127

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E  GLT +EI LS  I+  P +P  PSLN++QAVLL+   C E   V+      E    A
Sbjct: 128 ETSGLTTDEIDLSQLIVRIPTSPRQPSLNLAQAVLLL---CYEIFGVAQAPPPPEPLQLA 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           ++  L    D L+  +   G F   ++    +     +  +  L   EV LLRG +    
Sbjct: 185 SQAALQQLFDDLKEYILRIG-FTDEKRLPYAVRRFRRLLHKARLTPGEVQLLRGFLHQSR 243

Query: 248 KFSRQSSRRNN 258
            +++   R+ +
Sbjct: 244 WYAQHGRRKTD 254


>gi|238795106|ref|ZP_04638697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           intermedia ATCC 29909]
 gi|238725554|gb|EEQ17117.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           intermedia ATCC 29909]
          Length = 257

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 7/236 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V +        V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLEPRECG-VRSAHEAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192
           +   +  ++ P NP + SLN++ AV ++ +E      +   ++   ++E+  P     +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQATAPAIEEEEAPYPLVDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K
Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEK 239


>gi|294664933|ref|ZP_06730248.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605303|gb|EFF48639.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 254

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 8/247 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+  +
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPASHAQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + + 
Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247

Query: 252 QSSRRNN 258
            + +  N
Sbjct: 248 LARQAGN 254


>gi|253997035|ref|YP_003049099.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253983714|gb|ACT48572.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera mobilis
           JLW8]
          Length = 247

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 13/233 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L       NIG  ARAM    L  L LVNP   +P  +A S +  A  ++++  V S+
Sbjct: 12  VVLCQTSHPGNIGSTARAMKTMGLNHLYLVNPLH-FPDPQATSLATGAADLLETATVCSS 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133
           L+EA+         +AR R     ++  +EAA     R  S    Q + ++FG E  GL+
Sbjct: 71  LQEALTGCVLAIGMSARKRQISHELVNVREAA----HRAASLAQNQPIALVFGTEMSGLS 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGE 191
           N E+     +   P NP + SLN++ AV +M +E +  +I+  +    E N P  AT   
Sbjct: 127 NAELDCCQLLAMIPANPEYSSLNLAAAVQVMTYE-IRMAILEGKLEAAE-NPPELATNEA 184

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
           L  F  +LE +L + GY  P    KK+ + +  I+ R +L +EEV LLRGI++
Sbjct: 185 LEGFYGHLEETLVKIGYLNPT-APKKLSERIRRIYARAKLEKEEVNLLRGILT 236


>gi|17545880|ref|NP_519282.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428175|emb|CAD14863.1| putative trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 287

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRD-GWPSE-KARSSSANADCVIDSVR 72
           +LV+     N+G  ARA+      +     LV PR+ G  S   A + ++ AD V+   R
Sbjct: 29  VLVETSHPGNVGSTARALKTMGFCESGSYVLVRPREPGAQSHPDAVAMASGADDVLADAR 88

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V  ++ EA+A    + A TAR R      + P+ AA  +   + + G  V  +FG ER+G
Sbjct: 89  VVDDVGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATVAFVFGNERYG 148

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185
           L NE +   + +   P NP + SLN+SQAV L+ +E     +  +         V     
Sbjct: 149 LPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRVDGVGFVGE 208

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  ++     +LE  L E G+  P +  KK++  L  +F R +L  EEV +LRGI   
Sbjct: 209 PATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267

Query: 246 L 246
           +
Sbjct: 268 M 268


>gi|21243118|ref|NP_642700.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108636|gb|AAM37236.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 254

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 8/247 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     +   E           ++ PA+  +
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAVGEAEPAPAAASGLRDGPASHAQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + + 
Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247

Query: 252 QSSRRNN 258
            + +  N
Sbjct: 248 LARQAGN 254


>gi|238750361|ref|ZP_04611862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           rohdei ATCC 43380]
 gi|238711292|gb|EEQ03509.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           rohdei ATCC 43380]
          Length = 257

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 7/246 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    L+ L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVK-PDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A  + +  T+AR+R     +L P+E   V + R      V ++FGRER GLTNEE
Sbjct: 66  LDEALAGCNLVVGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP-ATKGEL 192
           +   +  ++ P NP + SLN++ AV ++ +E      +   ++   V+E   P     +L
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAFLDRQQAAAPLVEEVEAPYPLVDDL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K  + 
Sbjct: 185 ERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQDKC 243

Query: 253 SSRRNN 258
             R  +
Sbjct: 244 PPRATD 249


>gi|311281011|ref|YP_003943242.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
 gi|308750206|gb|ADO49958.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
          Length = 228

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T++R+V+          R +    D +++++  ++ 
Sbjct: 5   IVLVSPARAENIGAAARAMKTMGFTEMRIVDSVAHREPGAQRVAHGAGD-ILENITTWAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  F     P+E   +L E+    Q+  ++FGRE  GLTN+E
Sbjct: 64  LAEALHDVDFTIATTARSRARFHYYATPQELVPLLEEKSQWLQHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|294624425|ref|ZP_06703114.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601274|gb|EFF45322.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 254

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 8/247 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVALEELLPAEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+  +
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPASHAQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + + 
Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 247

Query: 252 QSSRRNN 258
            + +  N
Sbjct: 248 LARQAGN 254


>gi|289671293|ref|ZP_06492368.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 254

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLGEAPIFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVVLEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+  +
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPASHAQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + +
Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMA 246


>gi|332532349|ref|ZP_08408229.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038216|gb|EGI74662.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 241

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 6/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L++L LV+P     S+ A + +A A  V+ +  +   
Sbjct: 8   IVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSQ-ASALAAGATDVLGNAVIVGT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++EAIAD      T+AR+R     ++ P+E    L     +G  V ++FGRE  GLTNEE
Sbjct: 67  VEEAIADCTLTIGTSARSRTLSWPMVEPRECGEKLVAEAVNGP-VALVFGRENSGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194
           + L N  +  P NP + SLN++ AV  + +E     +    K V+E +   P++K   L 
Sbjct: 126 LQLCNYHVCIPANPEYSSLNLAMAVQTLSYETRMAFLNQQPKKVEEDDAVYPSSKQTEL- 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE +L + G+    +    ++  L  +F R      E+ +LRGI+++++K
Sbjct: 185 FYEHLEETLFKTGFIIK-QHPGLVMTKLRRLFNRAHPEDAEMNILRGILTSINK 237


>gi|308270583|emb|CBX27195.1| hypothetical protein N47_A12240 [uncultured Desulfobacterium sp.]
          Length = 256

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 8/242 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVF 74
            I++V P+  ENIG  ARAM N  +  L +V+P + +  EK R    + +  VID +++F
Sbjct: 10  TIVMVRPRFPENIGSSARAMLNMGIRNLVVVSP-ENYDLEKIRKLGTHFSSDVIDGIQLF 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NLKEA+A  +++  TTAR       +  P   A  L + +     + I+FG E  GL N
Sbjct: 69  ENLKEALASYNYVVGTTARLGGERAILSTPSGMAERLAD-LSQNNKIAILFGSEDRGLVN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           E+I L + +I+ P +  F SLN+SQAVLL+   C E  +   E+  K     A++ EL  
Sbjct: 128 EDIRLCHELINIPSSD-FSSLNVSQAVLLV---CYELFLAGIEEKTKYSPRLASRHELDG 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
             + ++  L    Y    E     ++ L   F R +L   EV ++RGI   +D + + S 
Sbjct: 184 MYEQVKDILVRIDYINN-ENPDYWMNKLRHYFTRLKLRAGEVSIIRGICRQIDWYGKSSY 242

Query: 255 RR 256
           ++
Sbjct: 243 KK 244


>gi|317493377|ref|ZP_07951799.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918770|gb|EFV40107.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 228

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     + LR+V+ +  +     R  +  +  ++D+ + F+ 
Sbjct: 5   IVLVAPARPENIGAAARAMKTMGFSSLRIVDSQ-AYLEPATRWVAHGSGDILDNAQHFNT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD+ F  ATTAR+R  +    +P+E   +L E+     +  I+FGRE  GL+NEE
Sbjct: 64  LEAALADVDFTVATTARSRARYHYYCSPQELTGILQEKQSWTASCAIVFGREESGLSNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVFCYQ 154


>gi|260596420|ref|YP_003208991.1| putative RNA methyltransferase [Cronobacter turicensis z3032]
 gi|260215597|emb|CBA27837.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Cronobacter
           turicensis z3032]
          Length = 239

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 100/186 (53%), Gaps = 5/186 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M PY    ++  + P IILV P   EN+G  ARAM     T+LR+V          AR  
Sbjct: 1   MYPYHRITESLMRLP-IILVSPARPENVGAAARAMKTMGFTELRIVESA-AHLDPAARRV 58

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +  A  ++D+ + +  L  A+ D+ F  ATTAR+R  F     P++   +L E+      
Sbjct: 59  AHGAGDILDNTKRYDTLAAALEDVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPV 118

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSE 177
             ++FGRE  GLTNEE+AL++ +   P+   +PSLN+ QAV++  ++    M+N+  ++ 
Sbjct: 119 TALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLTALMQNTPTAAP 178

Query: 178 KNVKEQ 183
           +  ++Q
Sbjct: 179 QADQQQ 184


>gi|58582333|ref|YP_201349.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426927|gb|AAW75964.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 304

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 8/247 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 60  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSEAPIFATL 118

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 119 GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDEL 178

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+  +
Sbjct: 179 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQ 238

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + + 
Sbjct: 239 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAM 297

Query: 252 QSSRRNN 258
            + +  N
Sbjct: 298 LARQAEN 304


>gi|260223171|emb|CBA33466.1| hypothetical protein Csp_B19200 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 286

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 32/270 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73
           IL++     N+G  ARAM       L LV PR  WP+    E+    ++ A  V+D  R+
Sbjct: 13  ILINTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLDKCRI 70

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE------------------AAIVLNERI 115
              L EA+  +  + AT    R+       P+E                   A +++E  
Sbjct: 71  VETLDEALDGITHLCATAMTPRDFGPPTTTPREHFEVLSKQELLAHIPSAPGADLMSESS 130

Query: 116 FSGQ-NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             GQ  +G +FG ER+G+ NE++   +  +S P NP F SLNI  A+ ++ +E     + 
Sbjct: 131 PKGQQGIGFLFGSERFGMRNEDVYRCHVCLSIPSNPSFGSLNIGAALQVIAYEW---RLA 187

Query: 175 SSEKNVKEQNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
                V    TP   A   ++   L +LE SL   G+  P    KK++  L ++F R ++
Sbjct: 188 LGGFGVHAATTPSHLADAAQVTGMLTHLEQSLVHLGFLDPA-SPKKLMPRLNALFNRAQV 246

Query: 232 MREEVFLLRGIVSTLDKFSRQSSRRNNVLL 261
            +EE+ +LRGI   + +   QS  R+  L+
Sbjct: 247 TQEEIHILRGIAKAILQQGPQSPARSADLV 276


>gi|15804974|ref|NP_291016.1| putative RNA methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|12519435|gb|AAG59583.1|AE005671_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 228

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   ENIG  ARAM     ++LR+V+ +          +  + D +ID+++VF  
Sbjct: 5   IILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGD-IIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN  QAV +  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNXGQAVXVYCYQ 154


>gi|311107734|ref|YP_003980587.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762423|gb|ADP17872.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Achromobacter xylosoxidans A8]
          Length = 263

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 22/256 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I+V+P    N+G  ARA+     ++L LV P+  D     +A + ++ A  V+++ R+  
Sbjct: 11  IMVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTSQPEAVALASGALDVLENARIHD 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----GIIFGRERWG 131
           +L+EA+A +   +A TAR R+        ++AA +   R   G+       ++ G ER G
Sbjct: 71  SLEEALAPVTMAFALTARVRDLGPPPCDIRQAAEL--ARAHLGETAEGVAAVVLGTERAG 128

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---------SSEKNVKE 182
           LTN +IAL + I   P NP + SLN++QA+ L  WE     +V         S+ +    
Sbjct: 129 LTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPASTAQEAPR 188

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
              PA+   + +FL + E +L    +  P    KK++  +  +F R  L R+EV ++RG+
Sbjct: 189 GAAPASSEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRHALSRDEVDMMRGV 247

Query: 243 VSTLDKFSRQSSRRNN 258
            + +      ++RRN 
Sbjct: 248 CTAM----LATARRNG 259


>gi|289665695|ref|ZP_06487276.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 254

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLGEAPIFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+  +
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPASHAQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + +
Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMA 246


>gi|168238284|ref|ZP_02663342.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736797|ref|YP_002115608.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712299|gb|ACF91520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288817|gb|EDY28190.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 243

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E       + TP     +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLSTGFIRE-SHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|86606598|ref|YP_475361.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86555140|gb|ABD00098.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           JA-3-3Ab]
          Length = 269

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 18/248 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P    N+G +AR M N  L Q  LV+P+      +A + + +A  ++   R    
Sbjct: 17  LVLVRPAGPRNLGAIARVMKNMGLRQWVLVDPQCDPLDAEAVTMAVHATDLLRQARQVPT 76

Query: 77  LKEAIADLHFIYATTARNRNNFK---SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L EA+     ++ T  R R  +     + +P++A     E + +G    ++FG E  GL+
Sbjct: 77  LAEALQGCVQVFGTAGR-REPYPPEWQIQSPRQA---FPELLAAG-PAALVFGPEDRGLS 131

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-----CMENSIVSSEKNVKEQNTPAT 188
           NEE+AL +  I  P +P +PSLN++QAV +  +E     C       +   +   + PA 
Sbjct: 132 NEELALCHRQIQIPTDPAYPSLNLAQAVGICCYELRTLLCQNLPPPVTSSGI---SKPAP 188

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L  F  +LE  L + GY  P   ++KML  L ++F R  L+  EV LLRGI+  L +
Sbjct: 189 FELLEGFFGHLEALLLQIGYLHPHTARRKML-KLRALFHRAGLIVSEVALLRGILRQL-Q 246

Query: 249 FSRQSSRR 256
           +S++SS R
Sbjct: 247 WSQKSSPR 254


>gi|292491983|ref|YP_003527422.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
           halophilus Nc4]
 gi|291580578|gb|ADE15035.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
           halophilus Nc4]
          Length = 242

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L++L LVNP   +P  +A + ++ AD ++    + ++
Sbjct: 8   IVLVGTTHPGNIGAAARAMHTMGLSRLYLVNPAR-FPCAEATARASGADELLAQAEICTS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIA    ++  +AR+RN     L  +    +  +    G+ V I+FGRE  GL+N E
Sbjct: 67  LPQAIAGCRMVFGLSARSRNISWPALDARACGALTVQEALEGE-VAIVFGREHSGLSNIE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV +M +E    ++  +    +   ++ PA+  E+  
Sbjct: 126 LDHCHYWVHIPSNPAYSSLNLAAAVQVMAYEVRMAAMAGASPPARRPTESPPASVDEVEG 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           F  +LE +L E G+  P    K ++  L  +F R  L   EV +LRGI++ 
Sbjct: 186 FFQHLEQTLIEIGFLNP-SNPKLLMRRLRRLFFRAHLEIREVNILRGILTA 235


>gi|84624212|ref|YP_451584.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368152|dbj|BAE69310.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 254

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F+ L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSEAPIFATL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN+E+
Sbjct: 69  GEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGE 191
            L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+  +
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQ 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           L      L  +L+E  + +    +  M   L  + +R E+  +EV L+RGI+S   + +
Sbjct: 189 LEGMFGQLGDTLDEIDFHKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMA 246


>gi|16761459|ref|NP_457076.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765865|ref|NP_461480.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140844|ref|NP_804186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56412577|ref|YP_149652.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161612690|ref|YP_001586655.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167549427|ref|ZP_02343186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992671|ref|ZP_02573767.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168232119|ref|ZP_02657177.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168243330|ref|ZP_02668262.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261412|ref|ZP_02683385.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466698|ref|ZP_02700552.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168821474|ref|ZP_02833474.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194448527|ref|YP_002046606.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194470101|ref|ZP_03076085.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197249941|ref|YP_002147500.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263679|ref|ZP_03163753.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197361512|ref|YP_002141148.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200387870|ref|ZP_03214482.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929589|ref|ZP_03220663.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353644|ref|YP_002227445.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857953|ref|YP_002244604.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213425309|ref|ZP_03358059.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213646423|ref|ZP_03376476.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855575|ref|ZP_03383815.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238912666|ref|ZP_04656503.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825401|ref|ZP_06544638.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|54040206|sp|P66975|TRMJ_SALTI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|54042610|sp|P66974|TRMJ_SALTY RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|81362035|sp|Q5PNG3|TRMJ_SALPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|25304297|pir||AH0824 probable RNA methyltransferase STY2791 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421090|gb|AAL21439.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503759|emb|CAD02748.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136469|gb|AAO68035.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126834|gb|AAV76340.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161362054|gb|ABX65822.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406831|gb|ACF67050.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456465|gb|EDX45304.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195630820|gb|EDX49412.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197092988|emb|CAR58420.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213644|gb|ACH51041.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241934|gb|EDY24554.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|199604968|gb|EDZ03513.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321308|gb|EDZ06508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273425|emb|CAR38400.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325485|gb|EDZ13324.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329145|gb|EDZ15909.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333625|gb|EDZ20389.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205337632|gb|EDZ24396.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341947|gb|EDZ28711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349568|gb|EDZ36199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709756|emb|CAR34108.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247741|emb|CBG25569.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994667|gb|ACY89552.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159094|emb|CBW18608.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913534|dbj|BAJ37508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087043|emb|CBY96812.1| putative ATP synthase beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222750|gb|EFX47821.1| tRNA:Cm32/Um32 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613315|gb|EFY10257.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620481|gb|EFY17346.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625051|gb|EFY21880.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629505|gb|EFY26281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633892|gb|EFY30631.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635498|gb|EFY32209.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639826|gb|EFY36505.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644288|gb|EFY40832.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322652255|gb|EFY48612.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654837|gb|EFY51154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658235|gb|EFY54501.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661694|gb|EFY57912.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669674|gb|EFY65820.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673319|gb|EFY69424.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674892|gb|EFY70979.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682915|gb|EFY78933.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685576|gb|EFY81571.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130875|gb|ADX18305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194687|gb|EFZ79877.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200371|gb|EFZ85452.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201271|gb|EFZ86338.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208341|gb|EFZ93281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211583|gb|EFZ96421.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216015|gb|EGA00747.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221912|gb|EGA06306.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225597|gb|EGA09824.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229314|gb|EGA13438.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235371|gb|EGA19455.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237443|gb|EGA21506.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245198|gb|EGA29199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248772|gb|EGA32699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254048|gb|EGA37869.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323254913|gb|EGA38705.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262018|gb|EGA45583.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267802|gb|EGA51283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269639|gb|EGA53091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326628746|gb|EGE35089.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989472|gb|AEF08455.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 243

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E       + TP     +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|123968694|ref|YP_001009552.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601]
 gi|123198804|gb|ABM70445.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           AS9601]
          Length = 250

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 16/246 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S +A+  +     ++++ ++F +
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKILENCKIFDD 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRER 129
           L++AI D   + A+  R       +   K++  V +E IF          N+ IIFGRE 
Sbjct: 72  LQKAIFDCDLVLASCGR-------IDVNKDSFFVSSEDIFDWTLSFNKLNNLAIIFGRED 124

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLTN E+ L+N   S P +   PSLN+S AV ++++E  ++S  +    +K  N  ++K
Sbjct: 125 RGLTNSELLLANKTFSIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSK 184

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
               +FLD  E+ L   GY      K K +    +  +R      E+ +LRGIV  ++ F
Sbjct: 185 EVHDTFLDIEEMLL-RVGYLLKHTSKAK-ISKFKNFILRANTSMHEINVLRGIVHQINWF 242

Query: 250 SRQSSR 255
              S +
Sbjct: 243 LNNSKK 248


>gi|91784181|ref|YP_559387.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
 gi|91688135|gb|ABE31335.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
          Length = 278

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 121/256 (47%), Gaps = 17/256 (6%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60
           P   +L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 10  PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQTDPEAIAM 69

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+    V   L +A++ +H+  A TAR R        P+ AA +  ++   G+ 
Sbjct: 70  ASGADDVLACAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIARDQAVHGE- 128

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + ++FG ER GL+NE++   +A+   P NP + SLN++QAV ++ +E     + +     
Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATA 188

Query: 181 -------------KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
                        +     A   E+ S   +LE +L    +  P    KK++  L  +F 
Sbjct: 189 TAHAAPRAAAGPGEPAGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 247

Query: 228 RPELMREEVFLLRGIV 243
           R  L REEV ++RGI 
Sbjct: 248 RSGLEREEVNIVRGIA 263


>gi|317404811|gb|EFV85188.1| methyltransferase [Achromobacter xylosoxidans C54]
          Length = 263

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I+V+P    N+G  ARA+     ++L LV P+  D     +A + ++ A  V+++ R++ 
Sbjct: 11  IMVNPSHPGNVGSAARAIKTMGFSELVLVGPKFADVTSQPEAVALASGALDVLENARIYD 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133
            L+EA+A +   +A TAR R+        ++AA +    +         I+ G ER GLT
Sbjct: 71  TLEEALAPVTLAFALTARVRDLGPPPCDIRQAADLACAHLAETAEGCAAIVLGTERAGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------- 185
           N +I L + I   P NP + SLN++QA+ L  WE     +V     +   +T        
Sbjct: 131 NAQIGLCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPASTAQAPSRGA 190

Query: 186 -PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA+   + +FL + E +L    +  P    KK+L  +  +F R  L R+EV ++RG+ +
Sbjct: 191 EPASGEAVQAFLAHWEEALVGVRFLDPAH-PKKLLPRMRHLFSRVALTRDEVDMMRGVCT 249

Query: 245 TLDKFSRQ 252
            +   +R+
Sbjct: 250 AMLAAARR 257


>gi|20089567|ref|NP_615642.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A]
 gi|19914482|gb|AAM04122.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A]
          Length = 255

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 133/257 (51%), Gaps = 22/257 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G VARAM NF  + L LVNP +     +AR+ +++A  V++  R+ S 
Sbjct: 10  VVLVEPMYQGNVGSVARAMKNFGYSDLVLVNPCE--LEGQARAMASHARDVLEGARITST 67

Query: 77  LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132
           L+EA+  ADL  +  T A +    + +  P   A    E+I  +SG  + ++FGRE  G 
Sbjct: 68  LEEAVRGADL-LVGTTGASSLKTGEHIRLPLYPAREFKEKIKEYSG-TIAVLFGREDNGF 125

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            N+E+   + +I+ P + ++P +N+S AV ++++E  E         ++  N P  +G  
Sbjct: 126 NNDELKSFDMLITVPTSEIYPIMNLSHAVSIVLYELSE---------LEGGNNPLAEGFD 176

Query: 193 LSFL-DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  L  +L+  LEE  Y  P  KK K    L  I  R  L   EV  LRGI+   ++   
Sbjct: 177 LQLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRKTERKMG 234

Query: 252 QSSRRNNVLLQKTEKSE 268
            ++   N  LQK E SE
Sbjct: 235 FATEAEN--LQKVEDSE 249


>gi|254509335|ref|ZP_05121424.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
           parahaemolyticus 16]
 gi|219547731|gb|EED24767.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
           parahaemolyticus 16]
          Length = 241

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 21/242 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L LV+P+     E+A + +A A  + ++ ++ S+
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQALALAAGASDIAENAKIVSS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA++D   +  ++AR+R     +L P+E  +   E    GQ+  V ++FGRER GLTN
Sbjct: 66  LTEAVSDCALVVGSSARSRTLEWPMLEPRECGVKFVEE---GQSAPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT------ 188
           +E+   +  +  P NP + SLN++ AV  + +E      V      KEQ+  AT      
Sbjct: 123 DELQTCHYHVCIPANPEYSSLNLAMAVQTLSYE------VRMAFLEKEQSQYATTELVEY 176

Query: 189 --KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               EL  F ++LE  + ++  F   ++  K+++ L  +F R     +E+ +LRG+++ +
Sbjct: 177 PRHKELEMFFEHLE-KVAQKTQFISEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAI 235

Query: 247 DK 248
           +K
Sbjct: 236 EK 237


>gi|304311799|ref|YP_003811397.1| RNA methyltransferase [gamma proteobacterium HdN1]
 gi|301797532|emb|CBL45752.1| RNA methyltransferase [gamma proteobacterium HdN1]
          Length = 254

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 21/247 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V      N+G  ARAM    +  LRLV P D   + KA + ++ A  ++ + R F  
Sbjct: 9   IVMVHTTDSGNLGSAARAMKTMGIHDLRLVAPEDSPDTAKAIARASGAADLLLAARQFDT 68

Query: 77  LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+EA+AD   ++  +AR R   +  +  P  A +VL E +     V ++FGRE  GLTNE
Sbjct: 69  LEEALADCSLVFGASARKRTIPWPLITPPVMADLVLKEPVEG--RVAVLFGREDNGLTNE 126

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----------NVKEQN 184
           E++L +  ++ P +  +  LN+SQA+ ++ ++ +  S+V   K            ++E +
Sbjct: 127 ELSLCHYHVTIPCSDEYCVLNVSQAIQVICYQ-LRQSLVERPKGEEAALDTGSFGLREWD 185

Query: 185 T-PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRG 241
             PAT  E+  F  +LE +L    + +  E   +++  +  +F  IRP+ M  EV +LRG
Sbjct: 186 APPATGEEMERFFRHLEETLVALEFLKH-ENPGQLMTRMRRMFGRIRPDHM--EVNVLRG 242

Query: 242 IVSTLDK 248
           +++ + K
Sbjct: 243 VLTAMQK 249


>gi|284006760|emb|CBA72018.1| hypothetical tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
          Length = 242

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 11/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI    +   
Sbjct: 7   IILVETSHTGNMGSTARAMKTMGLTNLYLVNPLI-LPDSQAIALSAGASDVIGQATIVET 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L++A+   + +  T+ R R      + P+E      + I    N  V IIFGRER GLTN
Sbjct: 66  LEQALLGCNLVIGTSVRARTLSWPQVTPRECG---EKTIHQAINSPVAIIFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----G 190
           EE+      +  P NP + SLN++ AV L+ +E     +  +EK     N    +     
Sbjct: 123 EELQKCQYHLHIPTNPEYGSLNLAMAVQLISYEIRMAYLAINEKKSAVDNKDKVQYPPIE 182

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++  F  +LE  L   G+ R      ++++ L  +F R     +E+ +LRG++++++K+ 
Sbjct: 183 DIERFYIHLEAVLNASGFIRK-RHPGQIMNKLRRLFTRAHPEVQELHILRGVLTSIEKWH 241

Query: 251 R 251
           +
Sbjct: 242 K 242


>gi|293390584|ref|ZP_06634918.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951118|gb|EFE01237.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 246

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LT L LV P+     E+A + +A A+ V+ S     +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQSV-DEQAIALAAGAEDVVKSAVTAES 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A+AD   +  T+AR R+   S++ P+E          +G+ V I+FGRER GLTNEE
Sbjct: 66  FSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYATNGK-VAIVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQ-NTPATKGE 191
           +   +  ++ P NP + SLN++ AV L+ +E     +  +I S  +N++   N      E
Sbjct: 125 LLKCHYHVTIPANPDYASLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIYPQMEE 184

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  + E      G+     + + ++  L  ++ R  + + E+ +L G++S ++K
Sbjct: 185 LEYFFSHTEQLYRSVGFI----QNQGVMQRLRRLYNRAGIEKTELNILLGMLSAVEK 237


>gi|21231714|ref|NP_637631.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768160|ref|YP_242922.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113416|gb|AAM41555.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573492|gb|AAY48902.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 258

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 12/243 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    LT+L LV P      E A   SA A+ V+    +F  L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKAL-DEDAYRRSAGAEDVLSDAPIFETL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      LAP   A     +      V I+FGRER GLTN+E+
Sbjct: 69  AEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC----------MENSIVSSEKNVKEQNTPA 187
            L +A +  P +P F SLN++ AV ++ +E                  +  +   +  PA
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAPAAPAADSAGPRELPA 188

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  ++      L  +L+E  + +       M   L  + +R E+  +EV LLRGI++   
Sbjct: 189 SHAQMEGLFGQLGQTLDEIDFHKGRAPDSAMR-KLRRLLLRAEMTEQEVRLLRGILADAQ 247

Query: 248 KFS 250
           + +
Sbjct: 248 RMA 250


>gi|152973321|ref|YP_001338467.1| putative RNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958170|gb|ABR80200.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 228

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM      +LR+V+  +   +  AR  +  +  ++D +  + 
Sbjct: 4   TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GLTNE
Sbjct: 63  TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ Q+V++  ++
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQ 154


>gi|188991297|ref|YP_001903307.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733057|emb|CAP51255.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 258

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV  Q   NIG  ARAM    LT+L LV P      E A   SA A+ V+    +F  L
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKAL-DEDAYRRSAGAEDVLSDAPIFETL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD   +   TAR R      LAP   A     +      V I+FGRER GLTN+E+
Sbjct: 69  AEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTGLTNDEL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----------QNTPA 187
            L +A +  P +P F SLN++ AV ++ +E     + +      +          +  PA
Sbjct: 129 QLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAQAAPAADSAGPRELPA 188

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  ++      L  +L+E  + +       M   L  + +R E+  +EV LLRGI++   
Sbjct: 189 SHAQMEGLFGQLGQTLDEIDFHKGRAPDSAMR-KLRRLLLRAEMTEQEVRLLRGILADAQ 247

Query: 248 KFS 250
           + +
Sbjct: 248 RMA 250


>gi|262165058|ref|ZP_06032795.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
 gi|262024774|gb|EEY43442.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
          Length = 244

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 127/237 (53%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ ++F  
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIFPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P++      E++    S   V ++FGRER GLT
Sbjct: 67  LEAAVADCRLVVGTSARSRTLDWPMLEPRQCG----EKLIAEASQHTVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191
           N+E+ L +  +  P NP + SLN++ AV L+ +E      S+  S+   +++       E
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQE 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F ++LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 183 LELFYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINMLRGILTSMQK 238


>gi|148979594|ref|ZP_01815599.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
 gi|145961679|gb|EDK26976.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
          Length = 242

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  + ++  + S 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAENAVIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+ D   +  ++AR+R     +L P+E A    +    GQ   V ++FGRER GLTN
Sbjct: 66  LDEAVKDCGLVVGSSARSRTLEWPMLEPRECA---EKFAVEGQKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192
           EE+   +  +  P NP + SLN++ AV  + +E       +V+S+   + Q+      EL
Sbjct: 123 EELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYKPQPQDEYPRHEEL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248
             F ++LE  + +  +    +K  ++++ L  +F   RPEL  +E+  LRGI+++++K
Sbjct: 183 EMFYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPEL--QEINTLRGILTSIEK 237


>gi|298492564|ref|YP_003722741.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234482|gb|ADI65618.1| RNA methyltransferase, TrmH family, group 1 ['Nostoc azollae' 0708]
          Length = 245

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 13/250 (5%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            + G  I+LV+P    N+G +AR M NF L  L LVNP+    S  A   + +A  +++S
Sbjct: 2   GSAGIRIVLVEPAGPLNLGSIARVMKNFGLDNLVLVNPQCDHLSFDALKMAVHAKEILES 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +F  L EA+     + AT  R+ +    + +P+ +   L E   + + V +IFGRE  
Sbjct: 62  AVIFPTLPEALQGCVRVIATIGRDYSGHIPLESPRTSLPWLLEE--TEKPVALIFGREDR 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+NEE+  ++ +I  P NP +PSLN++ AV +  +E  +  +    K       P T+ 
Sbjct: 120 GLSNEELNYAHKLIFIPTNPQYPSLNLATAVSICCYELSQYELSQLAKIFTTPKPPTTE- 178

Query: 191 ELLSFLDYLEISLEER-------GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
             ++ +D LE   +E        GY  P     +M +    ++ R  +   EV +LRGI+
Sbjct: 179 --MAPVDMLEPYYQELESLLLFIGYLYPHTAASRM-EKFRHLYNRAHIQTTEVAMLRGIL 235

Query: 244 STLDKFSRQS 253
             ++   R S
Sbjct: 236 RQIEWAIRNS 245


>gi|56479103|ref|YP_160692.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56315146|emb|CAI09791.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 242

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG  ARAM    L++L LV P   +P   A + ++ A  V++S  V  +L EA+     
Sbjct: 22  NIGAAARAMKTMGLSRLYLVAP-SAFPDPVADARASGATDVLESACVVDSLDEALHGTIL 80

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
             A TAR R     V + +EAA  L      G +V ++FG E  GLTN+E+   +  +S 
Sbjct: 81  SAAITARRRERSVPVRSAREAAPELVAFAEKG-DVALVFGTEMSGLTNDEVERCSMPVSI 139

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206
           P NP F SLN+  AV L+ +E +  + +S     +     AT  E+  F  +LE ++   
Sbjct: 140 PANPAFSSLNLGAAVQLLCYE-LRMAALSPTPPAEPLPDLATFEEIEGFHRHLERAMTAS 198

Query: 207 GYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           G++ P   K+ +   L  +F R  L +EEV +LRGIV  L++
Sbjct: 199 GFYDPANPKRLLQ-RLRRLFGRVRLEKEEVNILRGIVGALER 239


>gi|295098529|emb|CBK87619.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 228

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+         AR  +  +  ++D++  ++ 
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDST-AHLEPAARWVAHGSGDILDNITTYAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P E   +L E+    +   ++FGRE  GLTNEE
Sbjct: 64  LADALHDISFTVATTARSRAKFHYYATPAELVPMLEEKSLWLEKAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + L++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LELADVLTGAPMVADYPSLNLGQAVMVYCYQ 154


>gi|67923340|ref|ZP_00516822.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
 gi|67854812|gb|EAM50089.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
          Length = 248

 Score =  101 bits (252), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 4/231 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G VAR M N  L QL LV P      ++AR  + +   V++  +V   
Sbjct: 11  IVLVEPAGPLNVGSVARVMKNMGLHQLILVKPHCDRLGDEARLMAVHGVDVLEQSQVVET 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EA+     I ATT R+ +    +  P+ A   L   +  G N  ++FG E  GL NEE
Sbjct: 71  IPEALQGCQRIIATTGRSLSLPTHLETPRGALPWL---LAEGLNSALMFGTEDRGLNNEE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +  +   +S P NP +PSLN++QAV +  +E  + +    E         A+   L  + 
Sbjct: 128 LKYAQRFVSIPANPDYPSLNLAQAVAVCSYELYQAAQDPLESETDSYFEGASFELLEGYY 187

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            +LE  L + GY  P   K + L+    ++ +  L  EEV LLRGI+  ++
Sbjct: 188 QHLEEVLLKIGYLYPHTAKAR-LEKFRRLYNKANLTPEEVALLRGILRQVN 237


>gi|262044954|ref|ZP_06017996.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037681|gb|EEW38910.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 262

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM      +LR+V+  +   +  AR  +  +  ++D +  + 
Sbjct: 4   TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GLTNE
Sbjct: 63  TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ Q+V++  ++
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQ 154


>gi|313680728|ref|YP_004058467.1| RNA methyltransferase, trmh family, group 1 [Oceanithermus
           profundus DSM 14977]
 gi|313153443|gb|ADR37294.1| RNA methyltransferase, TrmH family, group 1 [Oceanithermus
           profundus DSM 14977]
          Length = 240

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 6/193 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   N+G  ARAM NF L +L LVNP         R ++  A  V++  R  + 
Sbjct: 4   VVLVEPREPRNVGAAARAMKNFGLEELVLVNPERPLDEAAYRLATRGAADVLEQARTVAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L EA+A   ++ AT+AR R  +   V  P+E A  +      G  V ++FGRE +GL+NE
Sbjct: 64  LDEALAGAVYVVATSARAREGYAGEVCTPREGAPRVRAMTAEGP-VALLFGRENFGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  ++A+   P    + SLN++QAVLL+ +E     +  +E     +  PA   EL  F
Sbjct: 123 EMDRAHAVWRIPTGG-YASLNLAQAVLLVAYEVF---LARAELTETARPRPAAAEELERF 178

Query: 196 LDYLEISLEERGY 208
              LE  L E  Y
Sbjct: 179 FADLEAYLIEIRY 191


>gi|258404596|ref|YP_003197338.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
 gi|257796823|gb|ACV67760.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
          Length = 256

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 10/233 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVF 74
            ++L  P+  EN+G  ARA  N     L+LV P   W  E+A   ++     V+ S+ + 
Sbjct: 12  TVVLFQPKFAENVGSTARACANLGCPNLKLVQP-PAWDLERAAPLATGRGKEVLHSLTLH 70

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A++  H +Y TTAR     K++  P++ A  +  ++ +G  V ++FG E  GL+N
Sbjct: 71  PDLPSALSPHHTVYGTTARTGGWRKAIRTPEQVAEDVAGKLAAGHQVAVVFGPEDRGLSN 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATKG 190
           EEI +   +++ P      SLN+SQAVLL+++E  +    SS K       P     T  
Sbjct: 131 EEIDICGQLLTIPTASEATSLNLSQAVLLVLYEWFK---ASSGKRFLRTTPPQSRLCTHE 187

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           E  + L  ++ +L    +F+       ML  +   F R EL R E  LL GI 
Sbjct: 188 ERETLLTSVQEALLRLDFFKDDNAAYWML-PVRRFFQRFELRRHEFNLLMGIC 239


>gi|88812653|ref|ZP_01127900.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrococcus mobilis Nb-231]
 gi|88790069|gb|EAR21189.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrococcus mobilis Nb-231]
          Length = 243

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 19/242 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L+      NIG  ARAM    L++L LV P   +P  +A++++ +A  V+ +  V ++
Sbjct: 8   IVLLGTTHPGNIGSAARAMKTMGLSRLHLVAPLY-YPDPRAQATAGHAADVLGAAHVHAD 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFGRERWGLTN 134
           L  A+ D   +   TAR R      L  +  A+ + E  R +    V ++FGRE  GLTN
Sbjct: 67  LAAALHDTRLVLGLTARPRRLAAEALDARCGALQIAEASRAYP---VALLFGREDSGLTN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE------CMENSIVSSEKNVKEQNTPAT 188
            +++  + ++  P NP +P LN++ AV ++ +E      C+E      E +      PA 
Sbjct: 124 AQLSYCHGVVHIPANPAYPVLNLAAAVQIVCYELFLAGRCLEGE--RGEPSGSSAAPPAP 181

Query: 189 KGELLSFLDYLEISLEERGY--FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             EL  F  +L+  ++  GY   RP +              RPE  R E+ LLRGI++ +
Sbjct: 182 MEELEGFYCHLQRIMQASGYSRHRP-DALLMRRLRRLFNRARPE--RAELNLLRGILTAI 238

Query: 247 DK 248
           ++
Sbjct: 239 ER 240


>gi|119774427|ref|YP_927167.1| RNA methyltransferase [Shewanella amazonensis SB2B]
 gi|119766927|gb|ABL99497.1| RNA methyltransferase, TrmH family, group 1 [Shewanella amazonensis
           SB2B]
          Length = 240

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 18/239 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG VARAM    L+ L L  PR   P  ++ + +A A  ++ ++    +
Sbjct: 7   VVLVGTSHPGNIGSVARAMKTMGLSNLYLAEPR-CEPDGQSVALAAGACDILKNLTRVES 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAI D   +  T+AR+R     +L P++A   L     SG  V I+FGRE  GL NEE
Sbjct: 66  LHEAIKDCALVIGTSARSRTLDWPLLDPRQAGGKLAAEAVSGP-VAIVFGRENHGLYNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE------CMENSIVS-SEKNVKEQNTPATK 189
           +   N  +  P NP + SLN++QAV ++ +E       +EN     +E  + E+N     
Sbjct: 125 LQACNYHVFIPANPEYMSLNLAQAVQIICYETRIAHLALENQAAEVTEYPLMEENE---- 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                F ++LE +L   G+        +++  L  +F R  +   E+ +LRGI+++++K
Sbjct: 181 ----RFFEHLERTLTGTGFIIK-NHPGQVMTKLRRLFTRARIENHEMNILRGILTSIEK 234


>gi|307354074|ref|YP_003895125.1| RNA methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307157307|gb|ADN36687.1| RNA methyltransferase, TrmH family, group 1 [Methanoplanus
           petrolearius DSM 11571]
          Length = 247

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 16/230 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P    NIG  AR M NF    L L+NP D    ++AR+ S++A  V+++ R  ++
Sbjct: 6   IVLCEPLYEGNIGFAARVMKNFGFYNLTLINPPD--IGDEARARSSHARDVLENARHVTS 63

Query: 77  LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTN 134
           L E I + + + ATT   ++    ++  P      L + I   +  V IIFGRE WGL+N
Sbjct: 64  LDEVIEESNILVATTGGLSKTVTHAMRMPYYEPSELRDMIKDIEGRVSIIFGRENWGLSN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           EEI   + I + P +P +P +NIS AV ++V+E           N+     P A++ E+ 
Sbjct: 124 EEIMKCDIICTIPTSPEYPIVNISHAVGVIVYEL---------ANIPRGTYPMASRIEVD 174

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +F D+L+  L+   +  P  K++  L  +  IF R  L   EV  + GI+
Sbjct: 175 AFYDHLDRFLDTINH--PDYKRENTLTMMRRIFGRTNLTIREVSTMHGIL 222


>gi|46581141|ref|YP_011949.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601619|ref|YP_966019.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|46450562|gb|AAS97209.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561848|gb|ABM27592.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|311234817|gb|ADP87671.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
          Length = 254

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 2/161 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVR 72
           G  +++V  +  EN+GMVARA  N     + LV+P + W  +KAR  ++A  + +++ V+
Sbjct: 4   GLTVVMVKTRFPENVGMVARACVNMGAQDIVLVDP-ERWEIDKARPLATAKGEPLLERVK 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V   L EA+AD   ++ TTAR     + +L P++A   +   +  G+ V ++ G E  GL
Sbjct: 63  VVGTLSEAVADCTAVWGTTARTGGWRREILTPEKAGPEMAASLADGERVALLLGPEDRGL 122

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            N+EI     +++ P  P   SLN++QA L++++EC + S+
Sbjct: 123 NNDEIEHCTRLLTIPTAPEASSLNVAQASLIVLYECHKASL 163


>gi|323699259|ref|ZP_08111171.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio sp.
           ND132]
 gi|323459191|gb|EGB15056.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           desulfuricans ND132]
          Length = 252

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 6/244 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L  P+  ENIG  ARA  N  +++L +V+P +    +    ++A+A  ++ S R+  
Sbjct: 6   VVVLFRPKYPENIGSAARACLNMGVSRLVVVDPYNFNMDKALPLATAHARHILTSARIVD 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+     ++ TTAR     K ++ P+  A V+++R+ +G  V ++FG E  GLTNE
Sbjct: 66  TLAQAVEGCTAVFGTTARTGGWRKGIMNPETLANVVDDRLRTGGRVAVVFGPEDKGLTNE 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGELLS 194
           E ++ + +++ P +    SLN++QAV+++++EC + S+      +   +  P T  E  +
Sbjct: 126 ETSVCSGLVTIPTSREDTSLNLAQAVVVVLYECFKRSLAGPFVPDGPPEERPTTIKEQEA 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST----LDKFS 250
               L+ +L    + +       ML  +   F +  L R E  LL G+       +DK+ 
Sbjct: 186 LFGNLQETLLAIDFLKDDNPDYWML-PVRRFFSKINLKRNEFNLLMGVCRQVRWFVDKYG 244

Query: 251 RQSS 254
            Q+ 
Sbjct: 245 PQAG 248


>gi|56750068|ref|YP_170769.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56685027|dbj|BAD78249.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 267

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G +AR M NF L+   +V PR      +AR  + +A  +++   +  N
Sbjct: 27  IVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVLVDN 86

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+    ++ ATT   + + + +  P E+   +   +  G    +IFGRE  GL   E
Sbjct: 87  LPSALEGCQWVAATT--GQRDLRDL--PLESPTQILPWLRQG-PAALIFGREDSGLQRSE 141

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----GEL 192
           ++L+   ++FP +P +PSLN++QAV L  +     S   S    +++++PA       +L
Sbjct: 142 LSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQESSPAAVRAAFEQL 201

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
             +   LE  L   GY        +M + + +I  R  L  EEV LLRG+V  L+
Sbjct: 202 HGYTSDLEALLLRVGYLHSHTAASRM-EKIRAIAQRSALTAEEVALLRGMVRQLN 255


>gi|81300411|ref|YP_400619.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
           7942]
 gi|81169292|gb|ABB57632.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
           7942]
          Length = 245

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G +AR M NF L+   +V PR      +AR  + +A  +++   +  N
Sbjct: 5   IVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVLVDN 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+    ++ ATT   + + + +  P E+   +   +  G    +IFGRE  GL   E
Sbjct: 65  LPSALEGCQWVAATT--GQRDLRDL--PLESPTQILPWLRQG-PAALIFGREDSGLQRSE 119

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----GEL 192
           ++L+   ++FP +P +PSLN++QAV L  +     S   S    +++++PA       +L
Sbjct: 120 LSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQESSPAAVRAAFEQL 179

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
             +   LE  L   GY        +M + + +I  R  L  EEV LLRG+V  L+
Sbjct: 180 HGYTSDLEALLLRVGYLHSHTAASRM-EKIRAIAQRSALTAEEVALLRGMVRQLN 233


>gi|238758816|ref|ZP_04619989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           aldovae ATCC 35236]
 gi|238702924|gb|EEP95468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           aldovae ATCC 35236]
          Length = 257

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 9/237 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLV-KPDSQAIALSAGASDVIGNATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E   V + R      V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVIGTSARSRTLPWPMLEPRECG-VRSAREAEHAPVALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-----KEQNTPATKGE 191
           +   +  ++ P NP + SLN++ AV ++ +E +  + +  ++ V      E+       +
Sbjct: 125 LQKCHYHVAIPANPEYSSLNLAMAVQIIAYE-VRVAFLERQQAVLPVIETEEAPYPLVDD 183

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K
Sbjct: 184 LERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEVQELNILRGMLTSIEK 239


>gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
 gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 3/232 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+PQ   NIG V RAM NF  +QL LVNP   + +  AR  + +A  +++   V  
Sbjct: 7   TVVLVEPQGPLNIGSVCRAMMNFGFSQLCLVNPCTTFNNLDARKMALSALPILEKAVVVD 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+ + H  + TT R     +  L+P++    L E   + Q   ++ GRE  GL   
Sbjct: 67  TLAQALKNCHLAFGTTRRFGKYRQDFLSPEDFGRTLAEEPDTNQ-CALVMGREDHGLYTS 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L    ++ P    + S+N+S A  L++++       +   N      PAT  EL   
Sbjct: 126 ELELCQRFVTIPTENAYGSMNLSHATALLLYQASMALGRTIPLNTGS-TPPATSHELAGM 184

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            D++  SL +  +    +    +L     IF R  L R EV ++RG++  +D
Sbjct: 185 YDHMTKSLCDIDFLN-TQNPDHLLRTFRRIFGRAGLDRREVAIIRGLMGRID 235


>gi|198242671|ref|YP_002216611.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197937187|gb|ACH74520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326624366|gb|EGE30711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 243

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNGQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E       + TP     +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|84387612|ref|ZP_00990629.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|218708627|ref|YP_002416248.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
 gi|84377457|gb|EAP94323.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|218321646|emb|CAV17598.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
          Length = 242

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 127/238 (53%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  + ++  + S 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAENATIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+ D   +  ++AR+R     +L P+E      +    GQ   V ++FGRER GLTN
Sbjct: 66  LDEAVKDCGLVVGSSARSRTLEWPMLEPRECG---QKFAVEGQKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192
           +E+   +  +  P NP + SLN++ AV  + +E       +V+S+   ++Q+      EL
Sbjct: 123 DELQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEEL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248
             F ++LE  + +  +    +K  ++++ L  +F   RPEL  +E+  LRGI+++++K
Sbjct: 183 EMFYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPEL--QEINTLRGILTSIEK 237


>gi|315125525|ref|YP_004067528.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315014038|gb|ADT67376.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 241

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L++L LV+P     S  A + +A A  V+ +  +  +
Sbjct: 8   IVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSH-ASALAAGATDVLGNAVIVDS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + +AIAD      T+AR+R     ++ P+E    L     +G  V ++FGRE  GLTNEE
Sbjct: 67  VADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVGEAVNGP-VALVFGRENSGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT---PATKGELL 193
           + L N  +  P NP + SLN++ AV  + +E     +    K V+E++    P++K   L
Sbjct: 126 LQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKAVQEEDDTLYPSSKQTEL 185

Query: 194 SFLDYLEISLEERGYFRPVEKKKKM-LDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F ++LE +L + G+   +++   M +  L  +F R      E+ +LRGI+++++K
Sbjct: 186 -FYEHLEDTLFKTGFI--IKQHPGMVMTKLRRLFNRARPEDAEMNILRGILTSINK 238


>gi|86145581|ref|ZP_01063911.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|85836552|gb|EAQ54678.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
          Length = 242

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 127/238 (53%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  + ++  + S 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAENATIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+ D   +  ++AR+R     +L P+E      +    GQ   V ++FGRER GLTN
Sbjct: 66  LDEAVKDCGLVVGSSARSRTLEWPMLEPRECG---QKFAVEGQKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192
           +E+   +  +  P NP + SLN++ AV  + +E       +V+S+   ++Q+      EL
Sbjct: 123 DELQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEEL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248
             F ++LE  + +  +    +K  ++++ L  +F   RPEL  +E+  LRGI+++++K
Sbjct: 183 EMFYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPEL--QEINTLRGILTSIEK 237


>gi|194442269|ref|YP_002041807.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194400932|gb|ACF61154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 243

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---GE 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E      +  A      +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEAPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|261338997|ref|ZP_05966855.1| hypothetical protein ENTCAN_05202 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318828|gb|EFC57766.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 228

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T+LR+V             +  + D ++D++  +  
Sbjct: 5   IVLVQPARAENIGAAARAMKTMGFTELRIVGSVAHLEPATRWVAHGSGD-IVDNITTYDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P+E   +L E+     +  ++FGRE  GLTN+E
Sbjct: 64  LADALHDISFTVATTARSRAKFHYYATPEELVPLLREKSQWLTHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|146312670|ref|YP_001177744.1| RNA methyltransferase [Enterobacter sp. 638]
 gi|145319546|gb|ABP61693.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
          Length = 244

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER GLTN+E
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSTAEAEHAP-VALVFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGELL 193
           +   +  ++   NP + SLN++ AV ++ +E     + + EK    + + TP     +L 
Sbjct: 125 LQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEKGETAEPEETPYPLVDDLE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRG+++++
Sbjct: 185 RFYGHLEQTLLTTGFIR-ASHPGQVMNKLRRLFTRARPETQELNILRGMLASI 236


>gi|157144530|ref|YP_001451849.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
 gi|166234834|sp|A8AD50|TRMJ_CITK8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|157081735|gb|ABV11413.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +A+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDDALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAVNTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E +   + + TP     +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENDETAEHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L   G+ R     + M + L  +F R     +E+ +LRGI++++++
Sbjct: 183 LERFYGHLEQTLLSTGFIREGHPGQVM-NKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|283786147|ref|YP_003366012.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282949601|emb|CBG89220.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 244

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 126/241 (52%), Gaps = 10/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +A+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDDALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTP-ATKGE 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E       + TP     +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENPDAAAHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRG+++++++  +
Sbjct: 183 LERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGMLASIEQLKK 241

Query: 252 Q 252
           +
Sbjct: 242 E 242


>gi|261867573|ref|YP_003255495.1| TrmH family RNA methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412905|gb|ACX82276.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 241

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LT L LV P+     ++A + +A A+ V+ S     +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQS-EDDQAIALAAGAEDVVKSAVTAES 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A+AD   +  T+AR R+   S++ P+E          +G+ V I+FGRER GLTNEE
Sbjct: 66  FSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYATNGK-VAIVFGRERVGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQ-NTPATKGE 191
           +   +  ++ P NP + SLN++ AV L+ +E     +  +I S  +N++   N      E
Sbjct: 125 LLKCHYHVTIPANPDYTSLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIYPQMEE 184

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  + E      G+     + + ++  L  ++ R  + + E+ +L G++S ++K
Sbjct: 185 LEYFFSHTEQLYRSVGFI----QNQGVMQRLRRLYNRAGIEKTELNILLGMLSAVEK 237


>gi|317049146|ref|YP_004116794.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316950763|gb|ADU70238.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
          Length = 247

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 13/248 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    L+ L LVNP    P  +A S +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSNLYLVNPLVK-PDSQAISLAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EAIA    +  T+AR+R+    +L  +E  I   + +  GQ   V ++FGRER GLTN
Sbjct: 66  LDEAIAGCSLVVGTSARSRSLPWPMLDSRECGI---KSVEEGQQAPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----G 190
           EE+   +  ++   NP + SLN++ AV ++ +E     + + EK   +     +      
Sbjct: 123 EELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLDAQEKATPQPQFAESPYPLVD 182

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L  F  ++E  +   G+ R      +++  L  ++ R    R+E+ +LRG++++ +K  
Sbjct: 183 DLERFYQHMEQMMLNSGFIRE-GNPGQVMSKLRRLYTRARPERDELNILRGMLASFEK-- 239

Query: 251 RQSSRRNN 258
           R+ S  N+
Sbjct: 240 RKGSEGNS 247


>gi|94310024|ref|YP_583234.1| RNA methyltransferase TrmH [Cupriavidus metallidurans CH34]
 gi|93353876|gb|ABF07965.1| putative RNA methyltransferase (TrmH family) [Cupriavidus
           metallidurans CH34]
          Length = 289

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 22/245 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ----LRLVNPRD-GWPSE-KARSSSANADCVIDS 70
           ++LV+     N+G VARA+           L LV+PR+ G  S   A + ++ AD V+ S
Sbjct: 30  VVLVETSHPGNVGSVARAIKTMGFGHVPGSLVLVSPREPGVVSHPDAVAMASGADDVLAS 89

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGR 127
             +  +++ A+A   F  A TAR R      L P+ AA+     +        V  +FG 
Sbjct: 90  ATIVDSIEAALAGTAFTVAMTARQREFGPPRLLPR-AAVAKARSVLEADPATTVAFVFGN 148

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--------- 178
           ER+GL N+ +   +A+   P NP++ SLN++QAV L+ +E M  +++ +++         
Sbjct: 149 ERFGLPNDAVLRCSAVTHIPANPVYASLNLAQAVQLIAYE-MRLALLEAQETAGGLPDVA 207

Query: 179 -NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
            ++     PAT  ++ +   +L+  L   G+  P    +K++  L  +F R  L REEV 
Sbjct: 208 GDIGYAGDPATTEQIEAMFGHLQAGLAAIGFLDPA-NPRKLMPRLRRLFARTGLEREEVN 266

Query: 238 LLRGI 242
           +LRGI
Sbjct: 267 ILRGI 271


>gi|209518051|ref|ZP_03266882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
 gi|209501555|gb|EEA01580.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
          Length = 276

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 19/258 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60
           P   +L+        +LV+P    N+G  ARA+     ++L LV+PR  +     +A + 
Sbjct: 10  PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAM 69

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ SV V   L +A+  +H+  A TAR R        P+ AA V +E    G+ 
Sbjct: 70  ASGADDVLASVHVVPTLADALTGVHWSVALTARLREYGPPQWTPRAAAAVAHEEAVHGE- 128

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--- 177
           + ++FG ER GL+NE++   +AI   P NP + SLN+ QAV ++ +E     +   E   
Sbjct: 129 IALVFGNERVGLSNEDVERCSAIAHIPANPAYSSLNLGQAVQVLAYELRTAYLCDDETTD 188

Query: 178 ------------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
                       ++   +   A   E+ S   +LE +L    +  P    KK++  L  +
Sbjct: 189 GAPALRAGAGQAESTGTRAQMAASDEIESMFAHLESALVALEFLDPA-NPKKLMSRLRRL 247

Query: 226 FIRPELMREEVFLLRGIV 243
           F R  L REEV ++RGI 
Sbjct: 248 FARSGLEREEVNIVRGIA 265


>gi|289208012|ref|YP_003460078.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
           K90mix]
 gi|288943643|gb|ADC71342.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
           K90mix]
          Length = 245

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 8/237 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    +T L LV P + +P   A + ++ AD ++   RV  +
Sbjct: 10  VVLVGTTHPGNIGSAARAMKAMGITDLVLVAP-ERFPHADATALASGADDLLAGARVVDD 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A++D  ++  T+AR R +   VL P  AA  +  +   G  V ++FGRE  GLTN E
Sbjct: 69  LAAAVSDCVWVIGTSARLRTHSVPVLGPDIAAEQVLTQAAEGP-VALVFGREHSGLTNAE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKE----QNTPATKGE 191
           +   NA +  P  P F SLN++ +V +M +     ++   S +   E    ++  A++ E
Sbjct: 128 LDHCNAFVQIPTVPNFSSLNLAGSVQVMTYALRMAALAGESARTAAEPEDARDPLASQAE 187

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +     + E +L       P E  + ++  L  +++R  L   EV +LRGI++  ++
Sbjct: 188 MEGLFSHFEKALTTIEVLDP-ENPRHLMRRLRHLYMRAGLSASEVRMLRGILTHTER 243


>gi|262172183|ref|ZP_06039861.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
 gi|261893259|gb|EEY39245.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
          Length = 244

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 127/237 (53%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ ++F  
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIFPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P++      E++    S   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLDWPMLEPRQCG----EKLIAEASQHTVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191
           N+E+ L +  +  P NP + SLN++ AV L+ +E      S+  S+   +++       E
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQE 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F ++LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 183 LELFYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|297567088|ref|YP_003686060.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
           DSM 9946]
 gi|296851537|gb|ADH64552.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
           DSM 9946]
          Length = 253

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 16/247 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-------DGWPSEKAR 58
           P L +S +   ++LV PQ   N+G VARAM NF L  L LV P        +   + KA 
Sbjct: 3   PSLLDSIR---VVLVSPQEPMNVGAVARAMRNFGLGDLWLVAPEPTVAETLEAPLNAKAY 59

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFS 117
             +  A+ ++D  R    L EA+ D   +  TT R+R+ +  S+++P+     + +    
Sbjct: 60  HLAVRAEVILDQARRSKTLLEAVQDCVLVVGTTVRSRDVYPGSLVSPRTLTPQVLKAAQR 119

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G+ V ++FGRE +GLTN+E+ L+  I+  P  P   +LN++QAVLL+ +E     I +  
Sbjct: 120 GK-VALVFGRETFGLTNDELDLAQYILRIPTAPEQTNLNLAQAVLLVAYELF---IGAEN 175

Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
                 + PAT+  L +  D LE  + E G+  P  +       L  I  +  L   EV 
Sbjct: 176 PPEPPADQPATRDALEALFDDLERYVLEIGFTDP-RRLPYTRRRLRRILHKATLTDPEVK 234

Query: 238 LLRGIVS 244
           +LRG + 
Sbjct: 235 MLRGFLH 241


>gi|62181109|ref|YP_217526.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224582915|ref|YP_002636713.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|75481665|sp|Q57LG7|TRMJ_SALCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|62128742|gb|AAX66445.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467442|gb|ACN45272.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715599|gb|EFZ07170.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 243

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 12/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKEQNTPATKG 190
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E     + +E   P    
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEMPYPLVD- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 182 DLERFYGHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238


>gi|297539147|ref|YP_003674916.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297258494|gb|ADI30339.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera sp. 301]
          Length = 257

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L       NIG  ARAM    L  L LV P D +P   A + S  A  ++++  V   
Sbjct: 23  VVLCQTSHPGNIGSAARAMKTMGLKHLYLVKP-DKFPDAHATALSTGAADLLENAIVTET 81

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+         +AR R     ++  +EAA+  + +I + Q + ++FG E  GL+N E
Sbjct: 82  LSEALQGCVLAIGMSARKRQISHELVNVREAAMRAS-KIAASQPIALVFGTEMSGLSNAE 140

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +     +   P NP + SLN++ AV +M +E M  +++  + +       AT   L    
Sbjct: 141 LDCCQLLAMIPANPEYSSLNLAAAVQVMCYE-MRMAVLECKLDEITPTEYATNEALEGLY 199

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            +LE +L + GY  P    KK+ + +  I+ R +L +EEV LLRGI++
Sbjct: 200 AHLEDTLIKIGYLNP-NAPKKLSERIRRIYARAKLEKEEVNLLRGILT 246


>gi|330001784|ref|ZP_08304105.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
 gi|328537560|gb|EGF63784.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
          Length = 228

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM      +LR+V+  +   +  AR  +  +  ++D +  + 
Sbjct: 4   TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GL+NE
Sbjct: 63  TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ Q+V++  ++
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQ 154


>gi|121998574|ref|YP_001003361.1| RNA methyltransferase [Halorhodospira halophila SL1]
 gi|121589979|gb|ABM62559.1| RNA methyltransferase, TrmH family, group 1 [Halorhodospira
           halophila SL1]
          Length = 249

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 2/228 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L  L LV+P+      +A + +A A  V++  R   +
Sbjct: 8   IVLVGTTHPGNIGAAARAMRTMGLRDLYLVDPQCDPGDPEAVARAAGAGDVLERARTAPD 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+      +  +AR+R   +  L  + AA     +   G ++  +FGRER GLTN E
Sbjct: 68  LATALTGCRLAFGLSARSRAERQPRLELRPAAESAVAQGGDG-DLAWVFGRERTGLTNAE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   + ++  P +P + SLN++Q+V L+ WE    +        + +  PA    L  F 
Sbjct: 127 LDHCHYLVQIPTDPDYSSLNVAQSVQLVAWELRMAAAAGGPVQGQAEEPPAAVDTLERFF 186

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
           D+LE      GY          +  L +IF R  L  +EV +LRG++S
Sbjct: 187 DHLEEMAGRVGYL-DRHNPALTMRRLRNIFRRAWLTEDEVRMLRGLIS 233


>gi|260598924|ref|YP_003211495.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter
           turicensis z3032]
 gi|260218101|emb|CBA32873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Cronobacter
           turicensis z3032]
          Length = 246

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 10/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNASIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135
           L EA+A    +  T+AR+R     +L P+E  +  ++E   +   V I+FGRER GLTN+
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAAHA--PVAIVFGRERVGLTND 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTP-ATKG 190
           E+   +  ++   NP + SLN++ AV ++ +E     +      +  + +E+ TP     
Sbjct: 124 ELQKCHYHVAIAANPEYSSLNLAMAVQVVAYEVRMAWLATQDAQAPAHAEEEETPYPLVD 183

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +L  F  +LE  L   G+ R      ++++ L  +F R     +E+ +LRG++++++
Sbjct: 184 DLERFYGHLEQVLLTTGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGMLASIE 239


>gi|221198388|ref|ZP_03571434.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2M]
 gi|221208935|ref|ZP_03581932.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2]
 gi|221171218|gb|EEE03668.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2]
 gi|221182320|gb|EEE14721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2M]
          Length = 274

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 8/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 90

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA++ + +  A TAR R      LAP+ AA     ++ SG ++ ++FG ER GL NE
Sbjct: 91  TLGEALSGVQWSIALTARTREYGPPRLAPRAAAAHARTQVESG-DIALVFGNERTGLANE 149

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGE 191
            +   +A+   P NP + SLN++QAV ++ +E     +E +   +++   +    A   E
Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGALAQSDE 209

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 210 IERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 260


>gi|33863403|ref|NP_894963.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
 gi|33640852|emb|CAE21307.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 249

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 9/234 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G VAR   NF + +LRLV+PR      +AR  + +   ++   + FS 
Sbjct: 12  VVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADPEARRMAVHGVAMLKQAKQFSC 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD H + A+  R  +    +  P++A   L E + S   V ++FGRE  GLTNEE
Sbjct: 72  LLDAVADCHRVVASCGRLDHGNIPLQTPEQAVPWLLESM-SAAPVALVFGREDRGLTNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----PATKGEL 192
           + L+  +++   +  +PSLN+S AV +++ E         +  ++E  +    PA+  +L
Sbjct: 131 LQLAQRVLTLHSSHGYPSLNLSHAVAIVLHELQR---CQGQGTLREGQSAWPDPASPRQL 187

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            + L   +  L E G+      + +M   +  +  R  +  EEV LLRG+V  L
Sbjct: 188 DACLTDAQDLLLEVGFLLSHTAQARM-AKVRGLLQRAAVRPEEVALLRGMVRQL 240


>gi|124022607|ref|YP_001016914.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303]
 gi|123962893|gb|ABM77649.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 249

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 9/234 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G VAR   NF + +LRLV+PR      +AR  + +   +++  + FS 
Sbjct: 12  VVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADAEARRMAVHGAAMLEQAKQFSC 71

Query: 77  LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L +A+AD H + A+  R +  N    L P E A+           V ++FGRE  GLTNE
Sbjct: 72  LLDAVADCHRVVASCGRLDHGNIP--LQPPEQAVPWLLESMGAAPVALVFGREDRGLTNE 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGEL 192
           E+ L+  +I+   +  +PSLN+S AV +++ E   C     +   ++      PA+  +L
Sbjct: 130 ELQLAQRVITLHSSYGYPSLNLSHAVAIVLHELQRCQGQGTLRGGQSAWPD--PASPRQL 187

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            + L   +  L E G+      + +M   +  +  R  +  EEV LLRG+V  L
Sbjct: 188 DACLTDAQDLLLEVGFLLSHTAQARM-AKVRGLLQRAAVRPEEVALLRGMVRQL 240


>gi|145628738|ref|ZP_01784538.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|144979208|gb|EDJ88894.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
          Length = 184

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 102/177 (57%), Gaps = 11/177 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + RV  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--VDEQSYALSAGAENIVKNARVVDS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
             EA+ D   +  T+AR R+   +++ P+E A    E++ + +  + I+FGRER GLTNE
Sbjct: 65  FDEAVDDCSLVIGTSARLRHLQNTLIEPRECA----EKVVAYKGKIAIVFGRERIGLTNE 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPAT 188
           E+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYPTT 177


>gi|73669106|ref|YP_305121.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
 gi|72396268|gb|AAZ70541.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 121/236 (51%), Gaps = 18/236 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G VARAM NF  T L LVNP       +AR+ S++A  V++  R+ S 
Sbjct: 10  IVLVEPMYQGNVGSVARAMKNFGYTDLVLVNP--CKLEGEARAMSSHARDVLEGARIVST 67

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT 133
           L+EA+   +    TT   +    + +  P   +  L ER+  +SG  + I+FGRE  G  
Sbjct: 68  LEEAVKGANLRIGTTGVASLKTGEHIRLPLYTSRELKERLKDYSG-TIAILFGREDTGFR 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N+E+   + + + P + ++P +N+S AV ++++E           +++  N+P   G  L
Sbjct: 127 NDELKSFDMLFTIPTSEIYPIMNLSHAVAVVLYEL---------SDMEGGNSPLADGFDL 177

Query: 194 SFL-DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             L +++E  LEE  Y  P  KK K    L  I  R  L   EV  LRGI+   ++
Sbjct: 178 QLLYEHMEKLLEEIDY--PPHKKDKTYLMLRRILGRAGLTPREVQTLRGIIKKTER 231


>gi|238892988|ref|YP_002917722.1| putative RNA methyltransferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545304|dbj|BAH61655.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 228

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM      +LR+V+  +   +  AR  +  +  ++D +  + 
Sbjct: 4   TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GL+NE
Sbjct: 63  TLAEALRDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ Q+V++  ++
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQ 154


>gi|325579031|ref|ZP_08148987.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159266|gb|EGC71400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 239

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 126/237 (53%), Gaps = 16/237 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+ L LV+P+     E++ + +A AD V+ +  +   
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLSNLYLVSPKS--VDEQSIALAAGADDVMRNAHIVDT 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
            ++AI D   +  T+AR R+   +++ P++ A    E+  + Q  V I+FGRER GLTNE
Sbjct: 65  FEQAIEDCSLVIGTSARLRHLQSTLIDPRKCA----EKASAHQGQVAIVFGRERVGLTNE 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191
           E+   +  ++ P NP + SLN++ AV L+ +E M  + ++ +K        ++   T  E
Sbjct: 121 ELLKCHYHLNIPANPEYSSLNLAMAVQLVSYE-MRMAFLAKDKTENALSMIEDIYPTAQE 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +  F  + E      G+     + + ++  L  ++ R  L + E+ +LRG++S ++K
Sbjct: 180 MEYFFAHTEQVYLSLGFI----QNQGVMQKLRRLYNRSSLEKNELNILRGMLSAVEK 232


>gi|296101179|ref|YP_003611325.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055638|gb|ADF60376.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 228

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+         AR  +  +  ++D++  +  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDSV-AHLEPAARWVAHGSGDILDNITTYDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P E   +L+E+    +   ++FGRE  GLTN+E
Sbjct: 64  LADALHDISFTVATTARSRAKFHYYATPAELVPMLSEKSQWLEKAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGAPMVADYPSLNLGQAVMVYCYQ 154


>gi|158333940|ref|YP_001515112.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304181|gb|ABW25798.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 243

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 10/231 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV+ ++ EN+G  ARA+     T LRLV PR    SEKA+  +  +  V+ +  ++ NL
Sbjct: 6   ILVESEVPENLGAAARALNTMGHTDLRLVRPRCDRNSEKAQVLAHGSQAVLSAAPIYQNL 65

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+ D+ F  ATTAR+R      ++ +E    L  +  + Q V  +FG ER GL   +I
Sbjct: 66  SDALHDIDFACATTARHRYEKYQYISVREVPQRLQAKGETLQQVAFVFGGERSGLNRHDI 125

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              + I + P    +PSLN++QAV++  +   E+++     ++K+Q    T    L + +
Sbjct: 126 DCCDLITTIPQGNPYPSLNLAQAVMVYSFMLSESAV-----HIKDQRLNRTPMPPLEYAN 180

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               SL+        E+ +K     Y       L  E+++LL  I + +D+
Sbjct: 181 LKHSSLQLMERIGLAERYQK-----YVTRGLARLGTEDLYLLHNIRACIDR 226


>gi|260773392|ref|ZP_05882308.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
 gi|260612531|gb|EEX37734.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
          Length = 242

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 15/243 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+Q+ LV P     ++    ++  +D  +++ +V S 
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQMVLVAPECAVDAQAIALAAGASDIALNA-QVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A+   +  ++AR+R     +L P++      +    GQ   V ++FGRER GLTN
Sbjct: 66  LSEAVAECGLVVGSSARSRTLEWPMLDPRQCG---EQFAIEGQTHPVAVVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT-----K 189
           EE+ L +  +  P NP + SLN++ AV  +   C E  +        E  +P        
Sbjct: 123 EELQLCHYHVCIPANPEYSSLNLAMAVQTL---CYEIRVAHLTHQQGEFPSPTMVDYPRH 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F  +LE  L E  +  P  +  ++++ L  +F R     +E+ +LRG+++ ++K 
Sbjct: 180 QELDRFYQHLERVLLESEFISP-SQPGQVMNKLRRLFSRARPEAQEINILRGVLTAVEKK 238

Query: 250 SRQ 252
            RQ
Sbjct: 239 MRQ 241


>gi|303326981|ref|ZP_07357423.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
 gi|302862969|gb|EFL85901.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
          Length = 247

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 2/156 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVR 72
           G  I+LV  +  ENIGM ARA  N     +RLV+P + W  EKA   ++     ++D VR
Sbjct: 5   GVQIVLVKTRFPENIGMAARACANMGCPAIRLVDP-ERWDREKAGPLATPKGQSLLDGVR 63

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +L  A+A+   +  TTAR     +++LAP +AA  +   +   + V ++FG E  GL
Sbjct: 64  VSPDLAVAVAESSLVLGTTARTGGWRQALLAPGQAAREVAAALARDEKVSLVFGPEDRGL 123

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            NEEI     +++ P +    SLN++QAVLLM++EC
Sbjct: 124 NNEEITHCQRLVTIPTDAAASSLNLAQAVLLMLYEC 159


>gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
 gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
          Length = 267

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 10/239 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L       NIG  ARAM    L  L LVNPR  +P ++A   +  A  ++   +V   
Sbjct: 30  IVLSHTSHPGNIGGAARAMKTMGLDSLYLVNPR-FFPDKEAERRATGALDILHKAKVCDT 88

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA++      A TAR R+    V   ++ A  L + +     V ++FG E  GLT  E
Sbjct: 89  LDEALSGTVLAAAVTARQRDLSHEVFDGRQGATKLLD-LAQKDFVALVFGTEMSGLTTLE 147

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----C---MENSIVSSEKNVKEQNTPATK 189
           ++    II  P NP + SLN++ AV +M +E    C   +E    S    +      AT 
Sbjct: 148 VSKCQIIIHIPANPEYSSLNLASAVQVMAYELRMACRDLLETPPASPTLTLHGGGMAATF 207

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            E+     +LE      G+  P ++ K+++  +  +F R  L +EEV +LRGI+S  +K
Sbjct: 208 DEIELLYAHLEQVAISSGFLDP-QEPKRLMQRMRRLFARARLEKEEVNILRGILSACEK 265


>gi|300114137|ref|YP_003760712.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299540074|gb|ADJ28391.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus watsonii
           C-113]
          Length = 246

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 4/232 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L +L LVNPR  +P  +A + ++ AD ++   +V ++
Sbjct: 8   IVLVETTHPGNIGAAARAMRTMGLHRLYLVNPRR-FPCAEATAMASGADELLVQAKVCTS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIA    ++  +AR+RN    VL  + +  ++ +    G+ V I+FGRE  GL+N E
Sbjct: 67  LAQAIAGCQKVFGLSARSRNISWPVLNTRASGALVVQEALKGE-VAIVFGRENSGLSNFE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   N  +  P NP + SLN++ AV +M +E    S+    ++  E ++ A+  E+  F 
Sbjct: 126 LDHCNYWVHIPSNPTYSSLNLAAAVQVMAYEIRMASMTDDFRHSGESSS-ASIDEIEGFF 184

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +LE +L +  +       K ++  L  +F R  L   E+ +LRGI++   K
Sbjct: 185 SHLEQTLIKIDFLNS-SNPKFLMRRLRRLFFRAHLNTPEINILRGILTAAQK 235


>gi|54307943|ref|YP_128963.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
 gi|46912369|emb|CAG19161.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 243

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 10/236 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L+      NIG  ARAM    LT L LV+P     ++    ++  AD V+ + ++   
Sbjct: 7   VVLIGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDAKSLALAAGAAD-VVTNAKIVKT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAIAD   +  ++AR+R      L P+E+ I   E   +   V I+FGRER GLTNEE
Sbjct: 66  LDEAIADCGLVIGSSARSRTLEWPQLDPRESGIKTIEEA-AAHPVAILFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGEL 192
           +   +  +  P NP + SLN++ AV  + +E     +E    + EK + E   P  K EL
Sbjct: 125 LQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAFLETQKYTGEKIINEY--PRAK-EL 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F ++LE  +  +  F   +    ++  L  +F R    ++E+ +LRGI+++++K
Sbjct: 182 ELFYEHLE-KVTTQTQFINKKHPGMVMTKLRRMFTRARPEQQELNILRGILTSVEK 236


>gi|313201578|ref|YP_004040236.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440894|gb|ADQ85000.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
           MP688]
          Length = 254

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 128/242 (52%), Gaps = 11/242 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P    NIG  ARAM    L  L+LVNP + +P  +A + +  A  ++++ +V S 
Sbjct: 13  VVLCQPSHPGNIGSTARAMKVMGLHDLKLVNP-EKFPDNEANALACGAVDILENAQVCST 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGL 132
           L+EA++        +AR R     +++ +EAA    E +    +    + ++FG E  GL
Sbjct: 72  LEEALSGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSAHEDSKIALVFGTEMSGL 131

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPATK 189
           +N E+     +   P +P + SLN++ AV +M +E +  +++  ++ +     + TPAT 
Sbjct: 132 SNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYE-VRMALLDEQQPLPHAGLKATPATN 190

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E+  F  +LE +L E G+  P    ++++  L  ++ R  L +EEV +LRGI+ TL + 
Sbjct: 191 DEVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGIL-TLTQH 248

Query: 250 SR 251
            R
Sbjct: 249 PR 250


>gi|113867235|ref|YP_725724.1| rRNA methyltransferase [Ralstonia eutropha H16]
 gi|113526011|emb|CAJ92356.1| rRNA methyltransferase [Ralstonia eutropha H16]
          Length = 299

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 6/234 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+     N+G VARA+       L LV+PR  D      A + ++ AD V+    +  
Sbjct: 53  VLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPDVLRHSDAVAMASGADDVLAGALIVD 112

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +  A+A      A TAR+R      L P+ AA    + +     V  +FG ER+GL NE
Sbjct: 113 QVDAALAGAALTVAMTARHREFGPPRLLPRAAAERARQTLSGSGGVAFVFGNERYGLPNE 172

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGEL 192
            +   NA+   P NP + SLN++QAV L+ +E    +  +   +  N+     PAT  ++
Sbjct: 173 VVERCNAVTHIPANPAYTSLNLAQAVQLIAYEMRLALLEAAPDAGANIGYAGEPATAEQV 232

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            +   +L+  LE  G+  P   ++ M      +     L REEV +LRGI   +
Sbjct: 233 EAMFGHLQTGLEAIGFLDPSNPRRLMTRLRRLLARS-GLEREEVNILRGIAKHM 285


>gi|126641510|ref|YP_001084494.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 244

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 127/242 (52%), Gaps = 20/242 (8%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    L++L LV+P+  +P    ++ +A A  +++ V +   L+EAI D H ++ T+AR+
Sbjct: 1   MKTMGLSKLVLVSPKT-YPHPDIQALAAGAQDLLEQVEIVETLEEAIKDCHLVFGTSARS 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R     +L  + A+    +    GQ + I+FGRE  GLTNEE+AL+N  ++ PVN  +  
Sbjct: 60  RTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEELALANYHLTIPVNSDYGV 119

Query: 155 LNISQAVLLMVWE----CMENSIVSSE---------KNVKEQNTPATKGELLSFLDYLEI 201
           LN++QA+ ++ +E     +E   V+S+         ++++      T+ ++  F  +LE 
Sbjct: 120 LNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWDEPLVTQQQMEEFYPHLEK 179

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS-----TLDKFSRQSSRR 256
            L E  +  P E  + +   L  +F R +L R E  LLRGI S     T  K+ + SS +
Sbjct: 180 MLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIFSRVQALTSGKWKKASSDK 238

Query: 257 NN 258
            +
Sbjct: 239 ED 240


>gi|268324809|emb|CBH38397.1| putative tRNA/rRNA methyltransferase [uncultured archaeon]
          Length = 234

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 14/230 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P+  EN+G VAR   NF  + L +VNP +     KA S +A+A  V+ S ++  +
Sbjct: 5   IILVEPKSEENVGAVARVTKNFGFSDLYIVNPPE--IGIKALSVAAHAYDVLQSCKIVDS 62

Query: 77  LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGLTN 134
           L  AIA+   +  TTA+   +  K +  P    + L +++   + +  I+FGRE  GL N
Sbjct: 63  LPVAIANSAIVAGTTAKLGASTNKHLRMPFFLPLELKDKVAGKRGILSILFGREDVGLLN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+ L + ++S P +P +P +N+S AV ++++E + ++I  + +    ++      +L +
Sbjct: 123 DELKLCDLVVSIPTSPEYPVMNLSHAVAVILYE-LSDTISGTLELAPVEDRERLYMQLKT 181

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
           FLD       E GY     KK K L  L  I  R EL  +E+  L+GI+ 
Sbjct: 182 FLD-------EIGYRE--HKKAKTLLMLRRILGRAELTTKELQTLQGIIG 222


>gi|253999551|ref|YP_003051614.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986230|gb|ACT51087.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
           SIP3-4]
          Length = 258

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 127/242 (52%), Gaps = 11/242 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P    NIG  ARAM    L  L+LVNP + +P  +A + +  A  ++++ +V S 
Sbjct: 17  VVLCQPSHPGNIGSTARAMKVMGLHDLKLVNP-EKFPDNEANALACGAVDILENAQVCST 75

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGL 132
           L+EA+         +AR R     +++ +EAA    E +    +    + ++FG E  GL
Sbjct: 76  LEEALTGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSADEDSKIALVFGTEMSGL 135

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPATK 189
           +N E+     +   P +P + SLN++ AV +M +E +  +++  ++ +     + TPAT 
Sbjct: 136 SNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYE-VRMALLDEQQALPHAGLKATPATN 194

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E+  F  +LE +L E G+  P    ++++  L  ++ R  L +EEV +LRGI+ TL + 
Sbjct: 195 DEVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGIL-TLTQH 252

Query: 250 SR 251
            R
Sbjct: 253 PR 254


>gi|328952869|ref|YP_004370203.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453193|gb|AEB09022.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 276

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 11/239 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P+  ENIG  ARA  N  L++L +V P         + ++ +A  +I ++ V+ +
Sbjct: 26  VILHKPRSPENIGASARAACNMGLSRLIVVQPEVLDQERMLKMATGSAAELIHNLVVYHD 85

Query: 77  LKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L  A+   HFI  TTAR   N + S + P++ A  L    +  + + ++FG E WGLTNE
Sbjct: 86  LGTALGPFHFIVGTTARIGGNVRQSPVTPRDIAQQLIPLSYHNR-IALLFGPENWGLTNE 144

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELL 193
           E+A  +A+++ P    F SLN++QAVLL+ +E     I  + ++ +++ TP  A   EL 
Sbjct: 145 ELAFCHALVTIPTAA-FRSLNLAQAVLLVAYE-----IFLARQDQRDRFTPRLANSWELE 198

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           +    L+ +L +  Y      +  M+  L   F R  L   EV ++RGI   +D + R+
Sbjct: 199 AMYADLQDTLIKINYIGHQNPQHWMM-RLRRFFSRHGLRAVEVQVIRGICRQIDWYVRR 256


>gi|187928095|ref|YP_001898582.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|187724985|gb|ACD26150.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
           12J]
          Length = 282

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 122/258 (47%), Gaps = 14/258 (5%)

Query: 2   TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSE 55
           TP  P+ L+  A     +LV+     N+G  ARA+      +     LV PR  D     
Sbjct: 7   TPADPEILRQQATRCRFVLVETSHPGNVGSTARALKTMGFGEPGSFVLVRPREADAKRHA 66

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            A + ++ AD V+ + RV  ++ EA+A      A TAR R      + P+ AA  +   +
Sbjct: 67  DAVAMASGADDVLAAARVVDDIGEALAGASLTIALTARPREFGPRRIGPRAAAEEVAALL 126

Query: 116 FS-GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +    V  +FG ER+GL NE +   + +   P NP + SLN+SQAV L+ +E     + 
Sbjct: 127 AAPDATVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLA 186

Query: 175 SSE------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228
            +       + V     PAT  ++    ++LE  L E G+  P +  KK++  L  +F R
Sbjct: 187 GTGTGDTRMEGVGFVGEPATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFAR 245

Query: 229 PELMREEVFLLRGIVSTL 246
            +L  EEV +LRGI   +
Sbjct: 246 TQLETEEVNILRGIAKRM 263


>gi|269103289|ref|ZP_06155986.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163187|gb|EEZ41683.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 243

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L+      NIG  ARAM    LT L LV+P      E+A + +A A  ++++  +   
Sbjct: 7   IVLIGTSHSGNIGSAARAMKVMGLTNLVLVDPACEI-DEQAMALAAGASDIVENATIVKT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135
           L E I D   +  ++AR+R      L P+E+ I  +NE   +   V I+FGRER GLTN+
Sbjct: 66  LDETIGDCGLVIGSSARSRTLEWPQLDPRESGIKTVNES--ASHPVAILFGRERTGLTND 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELL 193
           E+   +  +  P NP + SLN++ AV  + +E     +  +  + + K +  P  K EL 
Sbjct: 124 ELQKCHCHVYIPANPEYSSLNLAMAVQTISYEIRMAHLDAIKYQGDAKVEEYPRAK-ELE 182

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI--RPELMREEVFLLRGIVSTLDK 248
            F  +LE  L  +  F  V++   ++  L  +F   RPEL  +E+ +LRG++S+++K
Sbjct: 183 LFYQHLEKIL-VKTQFINVKQPAMVMAKLRRLFTRARPEL--QELNILRGVLSSVEK 236


>gi|319940963|ref|ZP_08015300.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805536|gb|EFW02331.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
           3_1_45B]
          Length = 288

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 123/244 (50%), Gaps = 16/244 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             IL +P    NIG  ARA+       LR+V PR  D    E+A + + ++  V+++ + 
Sbjct: 12  CFILCEPAHPGNIGSAARAIKTMGFRDLRVVAPREADYRTHEEALAYATSSADVLEASKS 71

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAP-KEAAIVLNERIFSGQ-NVGIIFGRERWG 131
           ++ L +A+  + + +A T  +R  F + L P ++AA     R+ + + ++  +FG ER G
Sbjct: 72  YATLAQALEGVTYAWAMTGYDRE-FGAPLTPMRQAASETASRLSALEGSIAFVFGTERSG 130

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------E 182
           LTNEE+ L     + P +P  PSLN+SQAV +  +E M+ +++ +  +            
Sbjct: 131 LTNEEVCLCQGCAAIPADPASPSLNLSQAVQIAAYE-MQLALLDARGDAGALYDWQGRFA 189

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
              PA    +  F D+ E ++   G   P +K +  ++    +F R  L + E+ LLRG+
Sbjct: 190 HEEPAPLEAVEGFFDHWERAMAACGAHDP-KKPRHFMEVSRRLFGRAGLTKNELDLLRGV 248

Query: 243 VSTL 246
            + +
Sbjct: 249 CAAV 252


>gi|288940600|ref|YP_003442840.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288895972|gb|ADC61808.1| RNA methyltransferase, TrmH family, group 1 [Allochromatium vinosum
           DSM 180]
          Length = 260

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 10/241 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+     NIG VARAM    L++L LV PR   P  +A + ++ AD ++    V  NL
Sbjct: 15  VLVETTHSGNIGAVARAMKTMGLSRLDLVAPRQ-RPDAEALARASGADDLLARAGVHENL 73

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+A    +   +AR R+    +L P E A  L      G+ V ++ GRE  GLTN+E+
Sbjct: 74  TDALAGCRLVVGASARLRSIEWPLLEPPECAERLLAEAGEGE-VALMLGRESSGLTNDEL 132

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGELLSFL 196
           A  + ++  P NP F SLN++ A  ++ +E    +  V+ E+  +     AT   +  F 
Sbjct: 133 ARCHFLVHIPTNPDFSSLNVAAAAQVLAYEIRRAARAVAGERLTETPRDLATAEAMEGFY 192

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS------TLDKFS 250
            +L  +L   G+  P E+ + +   L  +F R +  R E+ +LRGI+S      T ++F+
Sbjct: 193 AHLTETLVRIGFSDP-EQSRTLTRRLRRLFNRAQPDRVELNILRGILSAAQGRKTPERFA 251

Query: 251 R 251
           R
Sbjct: 252 R 252


>gi|85059749|ref|YP_455451.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123519073|sp|Q2NS29|TRMJ_SODGM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|84780269|dbj|BAE75046.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 255

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+ L LVNP    P  +A + SA A  +I +  V  N
Sbjct: 7   IVLVETSHTGNIGSTARAMKTMGLSNLYLVNPLHK-PDAQAIALSAGASDIIGNASVVDN 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+A    +  T+AR+R     +L P+E  +   +       V ++FGRER GLTN+E
Sbjct: 66  LDQALAGCSLVVGTSARSRTLPWPMLEPRECGVKSIQEAAQAP-VALLFGRERVGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGELLS 194
           +   +  +  P N  + SLN++ AV ++ +E     + S  ++  V+E +      +L  
Sbjct: 125 LQKCHFHVQIPANHEYSSLNLAMAVQILAYEVRVAWLDSQRQDATVQEASVYPVAEDLER 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           F  +LE  L   G+ R       M + L  +F R     +E+ +LRG++++++   +
Sbjct: 185 FYQHLEQVLSGTGFIRRAHPGLVM-NKLRRLFNRARPESQELNILRGMLTSIEHTQK 240


>gi|118594590|ref|ZP_01551937.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Methylophilales bacterium HTCC2181]
 gi|118440368|gb|EAV46995.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Methylophilales bacterium HTCC2181]
          Length = 246

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L     G NIG  ARAM    L+ L LV P+  +PS+ A + +A AD ++D   +  +
Sbjct: 13  VVLCRTSHGGNIGSSARAMKTMGLSNLYLVQPKH-FPSDDAYALAAGADDILDKAIIVGS 71

Query: 77  LKEAIADLHFIYATTARNR---NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L++AI D H     TAR R      K++    +  I + E     Q + ++FG E  GL+
Sbjct: 72  LEDAIKDSHIAIGFTARRRELSQPHKNIRESAQNLIAIAE----DQKISLVFGNETNGLS 127

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGE 191
           N+EI     +     N  + SLN++QAV +   E       S +   N   +N      E
Sbjct: 128 NDEIKHCQLLSFIDANKSYSSLNLAQAVQICCHELRVALDFSKDNAINRGTRNDFVPHSE 187

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE  L + G+ R ++  ++++  L  +F R +L ++EV ++RGI + + K
Sbjct: 188 LNGFFIHLESMLNDIGFLRKIQ-GERLMQRLRLLFNRTQLDQDEVNIMRGIFTEIQK 243


>gi|319779345|ref|YP_004130258.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109369|gb|ADU92115.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
          Length = 237

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           G NIG  ARA+     + L + N +  +   ++ A + ++NA   + +V+V  NL EA++
Sbjct: 7   GGNIGSAARALKTMGFSNLTISNSKLKEIHSNKDAIAMASNAQDTLSAVKVKDNLNEALS 66

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSN 141
           D++  +A TAR R +F+S+   + A + LN  I S   N+ I+ G E+ GL N  +   N
Sbjct: 67  DINMAFALTARARRDFESIDVRQMATVALNHLIESKNHNIAIVMGNEQSGLDNNSLYNFN 126

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNTPATKGELLSFLDY 198
            I+S P NP + SLN++QA+ +  WE      N + +   +V      AT G+    +  
Sbjct: 127 YIVSIPANPEYSSLNVAQALQITAWELRYKYINQLNNINFDVSAIKDSATIGQCDYLIKT 186

Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +   LE  GY +  +K   ++     +  + ++ +E+V +  GI+  L+K
Sbjct: 187 IIEKLESSGYDK--DKLNSIVLKTKHLLRKSQISKEDVQMFLGIIKHLEK 234


>gi|134296089|ref|YP_001119824.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134139246|gb|ABO54989.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           vietnamiensis G4]
          Length = 276

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 10/234 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+    V  
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLAGAHVVP 90

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A++ +H+  A TAR R      LAP+ AA     ++ +G ++ ++FG ER GL NE
Sbjct: 91  TLGDALSGVHWSIALTARTREYGPPRLAPRAAAAQARAQVGAG-DIALVFGNERTGLANE 149

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNV--KEQNTPATK 189
            +   +A+   P NP + SLN++QA+ ++ +E     +E+    S+      E  T A  
Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRVAFLEHGGAQSQSQPVQAEVGTLAQS 209

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
            E+     +LE +L    +  P    KK++  L  +F R  L REEV +LRG+ 
Sbjct: 210 DEIERMYGHLERALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGVA 262


>gi|75907629|ref|YP_321925.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75701354|gb|ABA21030.1| RNA methyltransferase TrmH, group 1 [Anabaena variabilis ATCC
           29413]
          Length = 243

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 4/234 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++LV+P    N+G +AR M NF L QL LVNP+    SE+A   + +A  +++S   
Sbjct: 5   GVRVVLVEPAGPLNVGAIARVMKNFGLAQLVLVNPQCDPLSEEAMRMAVHAKEILESAIT 64

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+       ATT R+ +   ++  P+ A   L E   + Q   +IFGRE  GL+
Sbjct: 65  VPTLPEALHGCVRAIATTGRDNDRGLTLETPRIALPWLLEE--TSQPSALIFGREDRGLS 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEE+  +   I  P +P + SLN++ AV +  +E  +N      + + E    A+   + 
Sbjct: 123 NEELIYAQRFIRIPTSPDYLSLNLATAVGICCYELAQNLTPPETQTISETEF-ASLEFME 181

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           ++   LE  L   GY  P     +M +    ++ R  L   EV +LRGI+  ++
Sbjct: 182 AYYQQLESLLLRIGYLYPHTATSRM-EKFRQLYNRAYLQTHEVGMLRGILRQIE 234


>gi|161502300|ref|YP_001569412.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863647|gb|ABX20270.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 242

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+     +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALTGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEATNTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTP-ATKGEL 192
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E  + + + TP     +L
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAEHEETPYPLVDDL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE +L   G+ R      ++++ L  +F R      E+ +LRG+++++++
Sbjct: 183 ERFYSHLEQTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESLELNILRGMLASIEQ 237


>gi|325282500|ref|YP_004255041.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           proteolyticus MRP]
 gi|324314309|gb|ADY25424.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           proteolyticus MRP]
          Length = 266

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 12/229 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV P+   NIG  ARAM N   + LRLV PR    S++AR+ + +A+ +++   V++
Sbjct: 18  AVVLVSPKTPGNIGSAARAMLNMGASDLRLVAPRCDHLSKEARAFAVHAEELLERAPVYA 77

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+AD      T+AR R +      P      L  R+ +  +  ++FG E  GL N 
Sbjct: 78  TLAEALADRDLSIGTSARERADMPRPQHP----AALRGRVRAATSPALVFGPEETGLLNA 133

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++    A +  P    + SLN++QAVLL+ +E ++      E+    +   AT+GE+   
Sbjct: 134 DLEQCQATVRIPTAD-YASLNLAQAVLLVTYEFLQG----GEEPAGGERKTATRGEMEEM 188

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFI-RPELMREEVFLLRGIV 243
             +L   +   GY   +  +  +   L+ + + R ++   E  L RG++
Sbjct: 189 YGHLVDVMHLTGYTDAMRARHTL--RLWRLMLDRAQMSSAESRLFRGLL 235


>gi|254428520|ref|ZP_05042227.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
 gi|196194689|gb|EDX89648.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
          Length = 220

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 12/216 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V +LV+P  GENIG  ARA+      +LRLVNP D      A+  + +++ V++   +  
Sbjct: 4   VFVLVEPARGENIGAAARAIKTMGFKELRLVNPGD---MRAAQWVAHHSNDVLEQAVIVD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD+    A TAR+R      +     A ++  +  S Q V I+FGRE  GLT +
Sbjct: 61  TLDQALADVDLSIACTARHRLQKDRYVDADRCAELVAGKGNSVQRVAIVFGREASGLTGD 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+A  +   S P+    PSLN+ QAV++  WE  +         V+ +  P T G     
Sbjct: 121 EVARCDLASSIPLAQAQPSLNLGQAVMVYAWELRKRP-----ATVQPEADPTTFGHTRQA 175

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
           L  L  +L+     +P E   + +D+L  +    EL
Sbjct: 176 LHQLLAALQ----IQPTENLHQWVDELLPLASDREL 207


>gi|145589038|ref|YP_001155635.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047444|gb|ABP34071.1| RNA methyltransferase, TrmH family, group 1 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 250

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 8/236 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+     N+G  ARA+       LRLVNP+  D     +A + ++ A  V+++  V  
Sbjct: 12  VLVETSHPGNVGSAARALKTMGFHDLRLVNPKTLDISTQAEAIALASGAVDVLETATVSG 71

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L++A+ +   +   T+R+R      L  + A  +++E + +   V ++FG ER GL NE
Sbjct: 72  SLEDAVQNCSLVLGLTSRDREFGPPALDWESARALISETVANQGQVAMVFGTERTGLENE 131

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW---ECMENSIVS--SEKNVKEQNTPATKG 190
            +AL    +    NP +PSLN++QA+++  +   E  EN   +  +  ++ +    A   
Sbjct: 132 HLALCTHRVWLNANPDYPSLNLAQALMVCAYALRETFENRTQTTLTSADINDGVDFADPI 191

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            + + L++    LE  GY  P    KK++    ++F R  L +EE+ LLRGI   +
Sbjct: 192 AVAAMLEHWREGLEAIGYLDPAH-PKKLMPRFQALFARSRLRKEEIDLLRGIAKQM 246


>gi|317484738|ref|ZP_07943638.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316923990|gb|EFV45176.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 257

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 126/253 (49%), Gaps = 8/253 (3%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCV 67
           Q++ +   II+V  +  ENIGM ARA  N    +L LV+P   W  EKAR  ++A  + +
Sbjct: 7   QDALRHLEIIMVGTKFPENIGMAARACANTGCGRLTLVSPA-WWDKEKARPLATAKGEPL 65

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D++ V   L +A+A     + TTAR     + +L P++AA  +   +  G  V I+FG 
Sbjct: 66  LDAIEVKPTLGDALAPNVLTFGTTARTGGWRRGLLTPEQAAGEIAPLLHEGSRVAIVFGC 125

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNV----KE 182
           E  GL+N +I     +++ P      SLN++QA+L++ +ECM+  S V  + ++     +
Sbjct: 126 EDRGLSNADIEQCQRLVTIPTAGEASSLNLAQAILILTYECMKAVSRVDPQPSLGNDPGQ 185

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           Q+   T  E       L+ +L    Y +  +     L  L     +  L R E+ +L GI
Sbjct: 186 QSRRITHEEQALLYARLKETLLAIDYLKS-DNPDYFLMPLRRFLGKSGLRRHEMDMLMGI 244

Query: 243 VSTLDKFSRQSSR 255
              +D   +++ +
Sbjct: 245 CRQVDNLRKEAGK 257


>gi|207743497|ref|YP_002259889.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|206594895|emb|CAQ61822.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 287

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 13/241 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
           +LV+     N+G  ARA+      +     LV PR  D      A + ++ AD V+ S R
Sbjct: 29  VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMASGADDVLASAR 88

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V  ++ EA+A      A TAR R      + P+ AA  +   + S    V  +FG ER+G
Sbjct: 89  VVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATVAFVFGNERYG 148

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEK--NVKEQNT 185
           L N+ +   + +   P NP + SLN+SQAV L+ +E     + ++     +   V     
Sbjct: 149 LPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRIDGVGFVGE 208

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  ++     +LE  L E G+  P  K KK++  L  +F R +L  EEV +LRGI   
Sbjct: 209 PATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267

Query: 246 L 246
           +
Sbjct: 268 M 268


>gi|78779450|ref|YP_397562.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712949|gb|ABB50126.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 249

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 8/242 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S KA+  +      +D  ++F N
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCKIFDN 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKE---AAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+ AI D   + A+  R   +  SV    E   + I+  E+I    N+ IIFGRE  GL+
Sbjct: 72  LENAIFDCDLVIASCGRIDVSKDSVFESSEDIVSWILSFEKI---NNLAIIFGREDRGLS 128

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N E+ L+N   + P +   PSLN+S AV ++++E  ++S  +  K ++  N  ++K    
Sbjct: 129 NNELLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNKSSKRNFNKELEVFNLASSKQIHD 188

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           SF++  E+ L   GY      K K +    +   R      E+ +LRGIV  ++ F   S
Sbjct: 189 SFVEIEEMLL-GVGYLLEHTSKAK-ISKFKNYLSRANTTMHEINVLRGIVHQINWFLNNS 246

Query: 254 SR 255
            R
Sbjct: 247 KR 248


>gi|241662700|ref|YP_002981060.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|309781257|ref|ZP_07675994.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|240864727|gb|ACS62388.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
           12D]
 gi|308920078|gb|EFP65738.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 294

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 13/241 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
           +LV+     N+G  ARA+      +     LV PR  D      A + ++ AD V+   R
Sbjct: 36  VLVETSHPGNVGSAARALKTMGFGEPGSFVLVRPREADAQSHADAVAMASGADDVLAGAR 95

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V  ++ EA+A      A TAR R      + P++AA  +   + +    V  +FG ER+G
Sbjct: 96  VVDDIGEALAGASLTIALTARPREFGPRRIGPRDAAEEVAALLAAPDTTVAFVFGNERFG 155

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185
           L NE +   + +   P NP + SLN+SQAV L+ +E     +  +         V     
Sbjct: 156 LPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLAGTGTGDTRMDGVGFVGE 215

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  ++    ++LE  L E G+  P +  KK++  L  +F R +L  EEV +LRGI   
Sbjct: 216 PATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 274

Query: 246 L 246
           +
Sbjct: 275 M 275


>gi|83748230|ref|ZP_00945256.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
 gi|83725071|gb|EAP72223.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
          Length = 326

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 13/241 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
           +LV+     N+G  ARA+      +     LV PR  D      A + ++ AD V+ S R
Sbjct: 68  VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMASGADDVLASAR 127

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V  ++ EA+A      A TAR R      + P+ AA  +   + S    V  +FG ER+G
Sbjct: 128 VVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATVAFVFGNERYG 187

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEK--NVKEQNT 185
           L N+ +   + +   P NP + SLN+SQAV L+ +E     + ++     +   V     
Sbjct: 188 LPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRIDGVGFVGE 247

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  ++     +LE  L E G+  P  K KK++  L  +F R +L  EEV +LRGI   
Sbjct: 248 PATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEEVNILRGIAKR 306

Query: 246 L 246
           +
Sbjct: 307 M 307


>gi|258627176|ref|ZP_05721964.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
 gi|258580478|gb|EEW05439.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
          Length = 244

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 126/237 (53%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ ++F  
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIFPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P +      E++    S   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLDWPMLEPPQCG----EKLIAEASQHTVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191
           N+E+ L +  +  P NP + SLN++ AV L+ +E      S+  S+   +++       E
Sbjct: 123 NDELQLCHYHVYVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQE 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F ++LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 183 LELFYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|156935477|ref|YP_001439393.1| putative RNA methyltransferase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533731|gb|ABU78557.1| hypothetical protein ESA_03336 [Cronobacter sakazakii ATCC BAA-894]
          Length = 228

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM     T+LR+V   +      AR  +  A  ++D+ R +  
Sbjct: 5   IILVSPARPENVGAAARAMKTMGFTELRIVA-SEAHLDPAARRVAHGAGDILDNTRHYDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+ ++ F  ATTAR+R  F     P++   +L E+        ++FGRE  GLTN+E
Sbjct: 64  LAAALEEVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPVTALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|71281163|ref|YP_267872.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71146903|gb|AAZ27376.1| RNA methyltransferase, TrmH family, group 1 [Colwellia
           psychrerythraea 34H]
          Length = 273

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 136/258 (52%), Gaps = 27/258 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+QL LV+P +  P+ +A++ +A A  V+ + +V S 
Sbjct: 23  IVLVNTSDCRNIGSAARAMKTMGLSQLILVDPIE-MPNGQAQAMAAGATDVLANAKVVST 81

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L EAI D   +  T+AR+R     +L P+       E++ +  +   V ++FGRE  GLT
Sbjct: 82  LAEAIEDCGLVVGTSARSRTLPWPMLEPRGCG----EKMIAEADEYPVALVFGRENSGLT 137

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------PA 187
           NEE+ L +  +  P NP + SLN++ AV  + +E   + +++ ++N +E++T        
Sbjct: 138 NEELQLCHFHVQIPANPEYSSLNLAMAVQTLSYEVRTSYLLAHDQNYQERSTGNGNSIAK 197

Query: 188 TKG----------ELLSFLDYLEISLEERGYFRPVEKKKKM-LDDLYSIFIRPELMREEV 236
           TK           E   F  + E +L+  G+   VE    + +  L  +F R     +E+
Sbjct: 198 TKNEDDELYPVIEETERFYQHFEKALKATGFI--VENHPGLVMTKLRRLFNRARPDVKEI 255

Query: 237 FLLRGIVSTLDKFSRQSS 254
            ++RGI +++++ S++ S
Sbjct: 256 KMMRGIFASMERSSKEKS 273


>gi|320177676|gb|EFW52665.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii ATCC
           9905]
          Length = 228

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 3/188 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV     ENIG  ARAM     ++LR+V+ +               D VID+++VF  
Sbjct: 5   IILVALARAENIGAAARAMKTMGFSELRIVDSQAHLEPAIRWVVHGFGD-VIDNIKVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +      S+    +    A +  +++
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQQPAKSDTTADQHQLQALRERVMA 183

Query: 195 FLDYLEIS 202
            L  L ++
Sbjct: 184 LLTTLAVA 191


>gi|126696500|ref|YP_001091386.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301]
 gi|126543543|gb|ABO17785.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 250

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 24/250 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S +AR  +      +   RVF +
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEARKMALKGQKFLKHCRVFDD 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRER 129
           L++A+ D   + A+  R       +   K++  V +E IF          N+ IIFGRE 
Sbjct: 72  LQKAVFDCDLVLASCGR-------IDVNKDSFFVSSEDIFDWTLSFKKINNLAIIFGRED 124

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ----NT 185
            GLTN E+ L+N   + P +   PSLN+S AV ++++E  +    SS+KN+  +    N 
Sbjct: 125 RGLTNNELLLANKTFNIPTSQDNPSLNLSHAVSIVLYELNK----SSKKNLNNESRAFNL 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            ++K    +F++  E+ L   GY      K K +    +  +R      E+ +LRGIV  
Sbjct: 181 ASSKAVHDTFMEIEEM-LMRVGYLLKHTSKAK-ISKFKNFTLRANTSMHEINVLRGIVHQ 238

Query: 246 LDKFSRQSSR 255
           ++ F   S +
Sbjct: 239 INWFLNNSKK 248


>gi|153216245|ref|ZP_01950345.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|124114390|gb|EAY33210.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
          Length = 244

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 130/241 (53%), Gaps = 19/241 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE------CMENSIVSSEKNVKEQNTPA 187
           N+E+ L +  +  P NP + SLN++ AV L+ +E       ++ S+ SS     ++  P 
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSS---TLQEEYPR 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            + EL  F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ 
Sbjct: 180 HQ-ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRVFTRARPEAQEINILRGILTSVQ 237

Query: 248 K 248
           K
Sbjct: 238 K 238


>gi|27363908|ref|NP_759436.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
 gi|320157287|ref|YP_004189666.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|27360025|gb|AAO08963.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
 gi|319932599|gb|ADV87463.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 242

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV P     ++    +S  AD  ++++ V ++
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEVDAQAIALASGAADIALNAL-VVNS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLTN 134
           L+EA+AD   +  ++AR+R     +L P E A    + +  GQ  +V ++FGRER GLTN
Sbjct: 66  LEEAVADCALVVGSSARSRTLEWPMLEPFECA---EKFVQEGQTSHVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGEL 192
           +E+   +  +  P NP + SLN++ AV  + +E     +   +     Q T       EL
Sbjct: 123 DELQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSEL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE  L +  + R  ++  ++++ +  +F R     +E+ +LRGI+++++K
Sbjct: 183 ELFYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEK 237


>gi|330446686|ref|ZP_08310338.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490877|dbj|GAA04835.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 246

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 6/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    LT L LV+P     S     ++  AD V+++ ++   
Sbjct: 7   VVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDSHTIALAAGAAD-VVENAKIVET 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNE 135
           L EA++D   +  ++AR+R      L P+E  I V+ E      NV I+FGRER GLTNE
Sbjct: 66  LDEAVSDCGLVVGSSARSRTLEWPQLDPRENGIKVVAES--EHHNVAILFGRERTGLTNE 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS- 194
           E+   +  +  P NP + SLN++ AV  + +E     + S +   K Q     + E L  
Sbjct: 124 ELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLESQKHTGKTQVEEYPRAEELER 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  +  +  F        ++  L  +F R    ++E+ +LRGI+S+++K
Sbjct: 184 FYVHLE-HVTRQTRFINKNHPGMVMAKLRRLFTRARPEQQELNILRGILSSVEK 236


>gi|124026236|ref|YP_001015352.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A]
 gi|123961304|gb|ABM76087.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           NATL1A]
          Length = 245

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 128/230 (55%), Gaps = 6/230 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF++ +LRLV+P+  + +++A+  +     +++  +V+ +
Sbjct: 9   VILVEPAGPINVGSVARLCENFSVHELRLVSPKCEYLAQEAKKMAVRGLKILEKAKVYED 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLTN 134
           L  A++D   I AT  R  +    + + K+A   ++ +ER    + + ++FGRE  GL+N
Sbjct: 69  LNSALSDCSRIIATCGRKEHGEIPLNSNKDALSWVLKSER---EETIALVFGREDRGLSN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+  +N +IS   +  +PSLN+S AV +++ +  + + +   K   + ++PA   +L  
Sbjct: 126 EELLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKKHTKTSSPANLIKLED 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            ++     L + G+      K KM   +  + +R E+  +EV L+RGI+S
Sbjct: 186 CINDAGSLLLDIGFLMKHTYKAKM-TKIKQLLLRGEIKDDEVALIRGIIS 234


>gi|37678937|ref|NP_933546.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37197679|dbj|BAC93517.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 242

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV P     ++    +S  AD  ++++ V ++
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEVDAQAIALASGAADIALNAL-VVNS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLTN 134
           L+EA+AD   +  ++AR+R     +L P E A    + +  GQ  +V ++FGRER GLTN
Sbjct: 66  LEEAVADCALVVGSSARSRTLEWPMLEPFECA---EKFVQEGQTSHVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGEL 192
           +E+   +  +  P NP + SLN++ AV  + +E     +   +     Q T       EL
Sbjct: 123 DELQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSEL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F  +LE  L +  + R  ++  ++++ +  +F R     +E+ +LRGI+++++K
Sbjct: 183 ELFYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEK 237


>gi|312796656|ref|YP_004029578.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
 gi|312168431|emb|CBW75434.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
          Length = 318

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 14/233 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----DGWPSEKARSSSANADCVIDSVRV 73
           +LV+P    N+G  ARA+     ++L LV PR       P  +A +S   AD V+ +  V
Sbjct: 76  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRLEAVRTHPDAQAMAS--GADDVLAAAHV 133

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L +A+A +H+  A TAR R      LAP+  A+       +  ++ ++FG ER GL+
Sbjct: 134 VPTLADALAGVHWSVALTAREREWGPPTLAPRALALRARGLAAA-GDIALVFGNERTGLS 192

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATK 189
           N ++   N +   P NP + SLN++QAV ++ +E     ++ +  +    V     P   
Sbjct: 193 NADVERCNVLAHIPANPAYSSLNLAQAVQVLAYELRLALLDTAPQTPPAGVASPLAP--H 250

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            E+     +LE +L    +  P    KK++  L  +F R  L REEV ++RGI
Sbjct: 251 DEIERMFVHLENALIALDFLDPA-SPKKLMPRLRRLFARAGLEREEVNIVRGI 302


>gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
 gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
          Length = 225

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 131/234 (55%), Gaps = 15/234 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P+   NIG  ARAM NF L+ LR+       P+ +   ++  A+ ++   ++F 
Sbjct: 3   TIILVKPRNPNNIGASARAMANFGLSDLRIAGAH--IPNLEEAQAAVGAEDLLKKAKIFD 60

Query: 76  NLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           NL++A+AD +F +A T+ +NRN  K +++       +N  I  G+ + ++FG E+ GL+ 
Sbjct: 61  NLQDALADCNFAFAATSLKNRNTQKEIVSLPN----INNHIKRGK-IAVVFGSEKTGLSV 115

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGEL 192
           ++I L +A+++ P     PS+N++QAV L+   C E +   + K +K+Q T  P+ K   
Sbjct: 116 KDIELCDAVLNIPTTTKQPSVNLAQAVNLV---CYETAKTKNFKTLKQQKTNLPSFKDID 172

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           L   D LE+  + + + + + K  + L  + +I     L ++++F+++  ++ L
Sbjct: 173 LLTADILEL-FDRKEFKKELTKTDREL-LIKNILKSSSLSKKQLFIIKKFLNLL 224


>gi|114320401|ref|YP_742084.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226795|gb|ABI56594.1| RNA methyltransferase, TrmH family, group 1 [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 260

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG VARAM    L +L LV P   +P E+A ++++ AD V+++     N
Sbjct: 16  IVLVGTSHPGNIGSVARAMKTMGLFRLELVAPECAFPDEQATANASRADDVLEAAGRHDN 75

Query: 77  LKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGL 132
           L  A+A    +   +AR R      VL  +EA      R+ +    + V ++FGRER GL
Sbjct: 76  LDAALAGCGLVMGLSARPRRITTAEVLDVREA----GRRVVAEAESRPVALLFGRERSGL 131

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           TN E+    A++  P NP + SLN++ AV ++   C E ++      V      A+  ++
Sbjct: 132 TNAELDRCQALVHIPANPEYGSLNLAAAVQVV---CHEVNMARGAGVVAPTRRSASAQDM 188

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
             F ++L    +  G+ R     + ++  L  +F R      E+ +LRG+++ ++
Sbjct: 189 EYFFEHLARVADRVGFLRK-HNPEILMRRLRQLFYRAAPDDHELQMLRGLLANVE 242


>gi|113954680|ref|YP_730178.1| RNA methyltransferase [Synechococcus sp. CC9311]
 gi|113882031|gb|ABI46989.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           CC9311]
          Length = 243

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 8/243 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G VAR   N+N+  LRLV PR      +A   + + D V+    +F +
Sbjct: 5   VVLVEPAGPLNVGSVARLCANYNIQDLRLVAPRCDPDDPEAVRMAVHGDAVLQHAAIFPS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD   + A+  R  +    + +P+E A  +      G    ++FGRE  GL+N+E
Sbjct: 65  LIEAVADCQQVVASCGRIDHGEIPLQSPEEIAPWIQSGRSQGLRSALVFGREDRGLSNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKGELLS 194
           + +S+ +       ++PSLN+S AV +++ E +E       K V       PA+  EL  
Sbjct: 125 LLISHRVFKLHTGDVYPSLNLSHAVAVVLHE-LERERRLRAKPVAPVISEIPASAPELDG 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
            L   E  L E G+        +M   +  +  R  +  +EV LLRG+V  L    R ++
Sbjct: 184 CLRDAEDLLLEVGFLLEHTASARMA-KVKGLVQRALIRSDEVALLRGMVRQL----RWAA 238

Query: 255 RRN 257
           RRN
Sbjct: 239 RRN 241


>gi|284054898|ref|ZP_06385108.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
 gi|291566347|dbj|BAI88619.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 255

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 11/236 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G +AR M N  LTQ+ LV+P     S +A++ + +A  V++S ++  +
Sbjct: 15  IVLVEPAGALNVGSIARVMKNMGLTQMVLVSPHCDPMSCEAKTMAVHAQDVLESAQIVDS 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+       ATTAR+R+  +++  P+     L +         +IFG E  GL+N E
Sbjct: 75  LPQALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLQ-----SPAALIFGPEDRGLSNTE 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTP--ATKGE 191
           +  +  I+  P +  + SLN++QAV +  +E     +  I SS     E + P  AT  +
Sbjct: 130 LNYAQRIVRIPSSSAYESLNLAQAVAVCCYELSLSAQTLIDSSTLPTPEPSEPLSATLDQ 189

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           L  +   LE  L + GY  P     +M +    +F R +    EV +LRG++S ++
Sbjct: 190 LEGYYQQLETLLLKIGYVYPHTVSSRM-EKFRHLFNRAQPSSTEVAMLRGVISQVE 244


>gi|91775165|ref|YP_544921.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
           KT]
 gi|91709152|gb|ABE49080.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
           KT]
          Length = 251

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 9/231 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L       NIG  ARAM    L+QL LV P+  +P  +A + ++ A  ++D+ +V + 
Sbjct: 13  IVLCQTSHPGNIGAAARAMKTMGLSQLVLVKPKS-FPHAEATAMASGATDILDNTQVCAT 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+         +AR R     +++ +     +   I +  +  V I+FG E  GL+N
Sbjct: 72  LAEALHGTTLAIGMSARRRELSHELVSARTG---VQRAIEAAHDAPVAIVFGTEMSGLSN 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
            E+     +   P NP + SLN++ AV ++ +E +  +++      + ++ P AT  E+ 
Sbjct: 129 AELDHCQLLAMIPANPEYSSLNLAAAVQVISYE-LRMAVLDHPGPTRTESAPLATSEEIE 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
               +LE  L E G+  P +  K+++  L  ++ R  L +EEV +LRGI+S
Sbjct: 188 RLYAHLEQVLIEIGFLNPAQ-PKRLMQRLRRMYGRARLEKEEVNILRGILS 237


>gi|85861011|ref|YP_463213.1| rRNA methylase [Syntrophus aciditrophicus SB]
 gi|85724102|gb|ABC79045.1| rRNA methylase, spoU family [Syntrophus aciditrophicus SB]
          Length = 263

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 9/246 (3%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L+ + +   ++L  P+   NIG  AR   N  + +L +V+ R+    E  + S+ 
Sbjct: 9   PRIMNLKATLEHIAVVLNHPKYAGNIGSAARCAKNMGIERLIVVSDREYRQEEIRQMSTH 68

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  V+DS+  F +L EA++  ++I  TTAR       V++P+E A  + E I     V 
Sbjct: 69  LAADVVDSIVYFRDLGEALSGFNYIVGTTARLGLARGPVVSPREMAEQVIE-ISRDNEVA 127

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG E  GLTN+++   + ++S P +  F SLN+S AV+++ +E     I  +E  +  
Sbjct: 128 LLFGPEDTGLTNDDLRYCHTVVSIPTSERFRSLNLSHAVMILCYE-----ISVAETGIPV 182

Query: 183 QNTP--ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           + TP  A+  EL     ++   L++ G+  P E  +  +  +  +F R  L  +EV ++R
Sbjct: 183 RFTPKMASSRELEGMYGHIGALLQKIGFLNP-ENPEYWMMHIRRLFSRIRLQAKEVRIIR 241

Query: 241 GIVSTL 246
           GI   L
Sbjct: 242 GICRQL 247


>gi|28897368|ref|NP_796973.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838065|ref|ZP_01990732.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
           AQ3810]
 gi|260363565|ref|ZP_05776394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus K5030]
 gi|260876328|ref|ZP_05888683.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AN-5034]
 gi|260898599|ref|ZP_05907095.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
           Peru-466]
 gi|260899301|ref|ZP_05907696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AQ4037]
 gi|28805580|dbj|BAC58857.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748532|gb|EDM59391.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
           AQ3810]
 gi|308086963|gb|EFO36658.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
           Peru-466]
 gi|308092944|gb|EFO42639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AN-5034]
 gi|308106671|gb|EFO44211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AQ4037]
 gi|308112984|gb|EFO50524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus K5030]
 gi|328472609|gb|EGF43472.1| RNA methyltransferase [Vibrio parahaemolyticus 10329]
          Length = 239

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  +  + +V S 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAADIAQNAQVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L+EAI D   +  ++AR+R     +L P+E      +    GQ   V ++FGRER GLTN
Sbjct: 66  LEEAIEDCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGQKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATKGE 191
           EE+   +  +  P NP + SLN++ AV  + +E     +   +K    V+ +  P  K E
Sbjct: 123 EELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQKQFSPVEVEEYPRHK-E 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F D+LE  + E  +    E+  ++++ L  +F R     +E+ +LRGI+++++K
Sbjct: 182 LEMFFDHLEKVIVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGILTSIEK 237


>gi|158334964|ref|YP_001516136.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305205|gb|ABW26822.1| RNA methyltransferase, TrmH family, group 1 [Acaryochloris marina
           MBIC11017]
          Length = 250

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 15/236 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G +AR M N  L QL LV P       +A+  S +A  V+   +    
Sbjct: 11  IVLVEPAGPLNVGSIARVMKNMGLGQLVLVKPHCNPLGPEAKQMSVHAVDVLYQAKTVQT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     + ATTAR R       APK+    +   I  G+   +IFG E  GL+NEE
Sbjct: 71  LSEALVGCQRVVATTARQRRLQVVTQAPKQ----ILPWILEGE-AALIFGPEDRGLSNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-----SEKNVKE----QNTPA 187
           +  + A +  P +  + +LN++QAV +  +E  +  ++      +E  + E    Q   A
Sbjct: 126 LYHAQAFLQIPTSSDYAALNLAQAVTICCYELRQCLLMGLDNRPTEPRIAESDHLQVELA 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              ++ +F   LE++L + GY  P     +M   L  +F R +L  +E+ +LRG++
Sbjct: 186 PFQQMEAFYQALEVALLDIGYLHPHTATARM-QKLRQLFNRSQLSTQELAMLRGMI 240


>gi|171057904|ref|YP_001790253.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170775349|gb|ACB33488.1| RNA methyltransferase, TrmH family, group 1 [Leptothrix cholodnii
           SP-6]
          Length = 252

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 12/230 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           IL+      N+G  ARAM       L LV PR  D    E+  + ++ A  ++   R+ +
Sbjct: 11  ILLHTSHAGNVGATARAMKVMGFRDLVLVAPRFADVLSREETVAMASGAADILVRARIVA 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+  +H   AT    R+       P+E    L      G+ V  +FG ER+G++NE
Sbjct: 71  TLDEALEGIHVACATAMTPRDFGPPTSTPREHLPALAA---GGERVAFVFGSERYGMSNE 127

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGEL 192
           E+      +S P  P + SLN++QAV LM +E    +    VS+     ++   A+  E+
Sbjct: 128 EVYRCQICLSIPTQPDYGSLNLAQAVQLMAYEWRMALGGYDVSARTPAVQR---ASLDEV 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
              L + + +L   G+  P    KK++  L  +  R  L REEV +LRGI
Sbjct: 185 QGALSHWQDTLVALGFLDPA-APKKLMPRLQQLLNRAALTREEVHILRGI 233


>gi|89072687|ref|ZP_01159252.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
 gi|89051507|gb|EAR56961.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
          Length = 246

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 10/236 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    LT L LV+P     S     ++  AD V+++ ++   
Sbjct: 7   VVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDSHTIALAAGAAD-VVENAKIVKT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L EA+AD  F+  ++AR+R      L P+E  I    ++ +  N   V I+FGRER GLT
Sbjct: 66  LDEAVADCGFVVGSSARSRTLEWPQLDPRENGI----KVVAESNLHPVAILFGRERTGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-EL 192
           NEE+   +  +  P NP + SLN++ AV  + +E     + S +   K +     +  EL
Sbjct: 122 NEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLDSQKYTGKTEVEEYPRAQEL 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F ++LE  +  +  F        ++  L  +F R    ++E+ +LRGI+S+++K
Sbjct: 182 EMFYEHLE-KVTRQTRFINKNHPGVVMAKLRRLFTRARPEQQELNILRGILSSVEK 236


>gi|153800584|ref|ZP_01955170.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229523431|ref|ZP_04412838.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
 gi|124123873|gb|EAY42616.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229339794|gb|EEO04809.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
          Length = 244

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 130/241 (53%), Gaps = 19/241 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE------CMENSIVSSEKNVKEQNTPA 187
           N+E+ L +  +  P NP + SLN++ AV L+ +E       ++ S+ SS     ++  P 
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSS---TLQEEYPR 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            + EL  F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ 
Sbjct: 180 HQ-ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQ 237

Query: 248 K 248
           K
Sbjct: 238 K 238


>gi|134046367|ref|YP_001097852.1| RNA methyltransferase [Methanococcus maripaludis C5]
 gi|132663992|gb|ABO35638.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C5]
          Length = 254

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 96/158 (60%), Gaps = 13/158 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NF++ +LR+V   D    E+A   + +A  ++++ + +S
Sbjct: 24  VVILVNPKYGGNLGAIARNMMNFDVEELRIVGTSDVL-DEEAYIRAVHAKNILNNAKFYS 82

Query: 76  NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAA---IVLNERIFSGQNVGIIFGRER 129
            L++AI D+ F  ATT     +RN  +  + P+E A   + LN R+      GI+FGRE 
Sbjct: 83  KLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVELNGRL------GIVFGRED 136

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            GL NE + L + ++S P +  +P +N+S AV ++++E
Sbjct: 137 DGLKNEYVELCDILVSVPTSNNYPIMNLSHAVSVLLYE 174


>gi|330830082|ref|YP_004393034.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328805218|gb|AEB50417.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565]
          Length = 216

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    LTQL LV+P+   P + A + +A A  V+ + R+   L +AIAD   +  T+AR+
Sbjct: 1   MKTMGLTQLVLVDPQ-ALPDDNAFALAAGASDVLANARIVPTLDDAIADCGLVIGTSARS 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R     +L P+EA     + +  G    V ++FGRER GLTN+E+   +  ++ P NP +
Sbjct: 60  RTLSWPMLDPREAG---EKSVVEGMQHPVALVFGRERTGLTNDELQKCHYHVAIPANPDY 116

Query: 153 PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212
            SLN++ AV  + +E     +       +++    +  +L  F  +LE +L + G+    
Sbjct: 117 SSLNLAMAVQTLCYEVRMRWLQGQAAEPEDEMVYPSAAQLEGFYQHLEQTLMKTGFIAD- 175

Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +    ++  L  +F R      E+ +LRGI++++ K
Sbjct: 176 DHPGHVMSKLRRLFNRARPEAAELNILRGILTSVQK 211


>gi|288937243|ref|YP_003441302.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|288891952|gb|ADC60270.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
          Length = 228

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM       LR+V+  +   +  AR  +  +  ++D V  + 
Sbjct: 4   TIILVAPARAENVGAAARAMKTMGFRDLRIVDS-EAHLAPAARWVAHGSGDILDGVTTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GL+NE
Sbjct: 63  TLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ Q+V++  ++
Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQSVMVYCYQ 154


>gi|110834589|ref|YP_693448.1| putative RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110647700|emb|CAL17176.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
           borkumensis SK2]
          Length = 223

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V ILV+P  GENIG  ARA+     +QLRLVNP D      A   + +++ V++   +  
Sbjct: 4   VFILVEPARGENIGAAARAIKTMGFSQLRLVNPGD---MTAAHWVAHHSNDVLEQAMIVD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L +A+ D+      TAR+R      +     A ++  +  S Q V I+FGRE  GLT +
Sbjct: 61  SLAQALVDVDLSIGCTARHRLQKDRYVDADHCAALVAGKGNSVQRVAIVFGREASGLTGD 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+ L +   S P+    PSLN++QAV++  WE
Sbjct: 121 ELGLCDLASSIPLAQQQPSLNLAQAVMIYAWE 152


>gi|90579380|ref|ZP_01235190.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
 gi|90440213|gb|EAS65394.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
          Length = 246

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    LT L LV+P           ++  AD V+++ ++   
Sbjct: 7   VVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEVDGHTIALAAGAAD-VVENAKIVKT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQN-VGIIFGRERWGLTN 134
           L EA+AD  F+  ++AR+R      L P+E  I V+ E   S Q+ V I+FGRER GLTN
Sbjct: 66  LDEAVADCGFVVGSSARSRTLEWPQLDPRENGIKVVAE---SNQHPVAILFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG-ELL 193
           EE+   +  +  P NP + SLN++ AV  + +E     + S +   K +     +  EL 
Sbjct: 123 EELQKCHCHVYIPANPEYSSLNLAMAVQTITYEVRMAYLDSQKYTGKTEVEEYPRAQELE 182

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F ++LE  +  +  F        ++  L  +F R    ++E+ +LRGI+S+++K
Sbjct: 183 MFYEHLE-KVTRQTRFINKNHPGVVMAKLRRLFTRARPEQQELNILRGILSSVEK 236


>gi|146310227|ref|YP_001175301.1| putative RNA methyltransferase [Enterobacter sp. 638]
 gi|145317103|gb|ABP59250.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
          Length = 228

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 1/151 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM       LR+V   +       R  +  +  +ID++  ++ 
Sbjct: 5   IVLVSPARAENIGAAARAMKTMGFNDLRIV-ASEAHLEPATRWVAHGSGEIIDNISTYAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P E   +L E+        ++FGRE  GLTNEE
Sbjct: 64  LADALHDISFTVATTARSRAKFHYYATPAELVPMLTEKSEWISKAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + L++ +   P+   +PSLN+ QAV++  ++
Sbjct: 124 LELADVLTGVPMVADYPSLNLGQAVMVYCYQ 154


>gi|206580923|ref|YP_002240548.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|290512648|ref|ZP_06552014.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
 gi|206569981|gb|ACI11757.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|289774989|gb|EFD82991.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
          Length = 228

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 1/152 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM       LR+V+  +   +  AR  +  +  ++D V  + 
Sbjct: 4   TIILVAPARAENVGAAARAMKTMGFRDLRIVDS-EAHLAPAARWVAHGSGDILDGVTTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GL+NE
Sbjct: 63  TLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+AL++ +   P+   +PSLN+ Q+V++  ++
Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQSVMVYCYQ 154


>gi|254191444|ref|ZP_04897948.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157939116|gb|EDO94786.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 309

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|45357897|ref|NP_987454.1| TrmH family RNA methyltransferase [Methanococcus maripaludis S2]
 gi|45047457|emb|CAF29890.1| rRNA methyltransferase related protein [Methanococcus maripaludis
           S2]
          Length = 234

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 97/158 (61%), Gaps = 13/158 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---SEKARSSSANADCVIDSVR 72
           V+ILV+P+ G N+G +AR M NF++ +LR+V    G P    ++A   + +A  ++++ +
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIV----GTPEILDDEAYIRAVHAKNILNNAK 59

Query: 73  VFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +S L++AI+D+ F  ATT     +RN  +  + P+E A        SG  +GI+FGRE 
Sbjct: 60  FYSKLEDAISDIDFTVATTGAVCGDRNVNRVPITPRELA--KKHSSISGT-LGIVFGRED 116

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            GL NE++ L + ++S P +  +P LN+S AV ++++E
Sbjct: 117 DGLKNEDVELCDILVSVPTSNKYPILNLSHAVSVILYE 154


>gi|226198991|ref|ZP_03794554.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929091|gb|EEH25115.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pakistan 9]
          Length = 309

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|126454106|ref|YP_001066857.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167846415|ref|ZP_02471923.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei B7210]
 gi|242315889|ref|ZP_04814905.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106b]
 gi|126227748|gb|ABN91288.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106a]
 gi|242139128|gb|EES25530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106b]
          Length = 311

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|119945066|ref|YP_942746.1| RNA methyltransferase [Psychromonas ingrahamii 37]
 gi|119863670|gb|ABM03147.1| RNA methyltransferase, TrmH family, group 1 [Psychromonas
           ingrahamii 37]
          Length = 254

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 20/258 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73
           IIL+      N+G  ARAM    LT+L LV P    DG    K+ + SA A  V+ + +V
Sbjct: 7   IILIGTSHPGNVGSAARAMKTMGLTKLVLVTPECEIDG----KSIALSAGASDVLKNHKV 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERW 130
            + L +AIAD   +   +AR+R     +L P+E    + +++    N   V ++FGRE  
Sbjct: 63  CNTLDDAIADCGLVIGASARSRTLDWPMLDPRE----MGQKVVEEGNKHPVALVFGRENS 118

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLTN+E+   +  +  P NP + SLN++ AV  + +E     + S     + Q  P    
Sbjct: 119 GLTNDELQKCHFHVFIPANPDYSSLNLAMAVQTLSYEVRMEFLASKAYPEQPQEYPLAD- 177

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDK 248
           E+    ++LE +L++ G+  P      M + L   F   RPE+  +E+ + RGI+S++ K
Sbjct: 178 EIEGLFNHLEQTLKDTGFIVPAHPGLVM-NKLRRFFNRARPEV--KELRMWRGILSSVQK 234

Query: 249 FSRQSSRRNNVLLQKTEK 266
               + +  N  +Q   K
Sbjct: 235 SVSSAEKEVNQSMQAKNK 252


>gi|167739289|ref|ZP_02412063.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 14]
 gi|167916848|ref|ZP_02503939.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 112]
 gi|254184411|ref|ZP_04891001.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1655]
 gi|254297077|ref|ZP_04964530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 406e]
 gi|157807712|gb|EDO84882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 406e]
 gi|184214942|gb|EDU11985.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1655]
          Length = 301

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|157413526|ref|YP_001484392.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215]
 gi|157388101|gb|ABV50806.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 250

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 16/246 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S +A+  +      + + +VF +
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKFLKNCKVFDD 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRER 129
           L++AI D   + A+  R       +   K++  V +E IF          N+ IIFGRE 
Sbjct: 72  LQKAIFDCDLVLASCGR-------IDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGRED 124

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLTN E+ L+N   + P +   PSLN+S AV ++++E  ++S  +    +K  N  ++K
Sbjct: 125 RGLTNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSK 184

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
               +F++  E+ L   GY      K K +    +  +R    + E+ +LRGIV  ++ F
Sbjct: 185 EVHDTFVEIEEMLL-RVGYLLKHTSKVK-ISKFKNFILRANTSKHELNVLRGIVHQINWF 242

Query: 250 SRQSSR 255
              S +
Sbjct: 243 LNNSKK 248


>gi|121600581|ref|YP_993479.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124386415|ref|YP_001029091.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126449337|ref|YP_001080987.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|167001789|ref|ZP_02267581.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           PRL-20]
 gi|167894996|ref|ZP_02482398.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 7894]
 gi|167919632|ref|ZP_02506723.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei BCC215]
 gi|238561600|ref|ZP_00441709.2| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           GB8 horse 4]
 gi|254178315|ref|ZP_04884970.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 10399]
 gi|254200241|ref|ZP_04906607.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           FMH]
 gi|254358011|ref|ZP_04974284.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           2002721280]
 gi|121229391|gb|ABM51909.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           SAVP1]
 gi|124294435|gb|ABN03704.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           NCTC 10229]
 gi|126242207|gb|ABO05300.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           NCTC 10247]
 gi|147749837|gb|EDK56911.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           FMH]
 gi|148027138|gb|EDK85159.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           2002721280]
 gi|160699354|gb|EDP89324.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 10399]
 gi|238524188|gb|EEP87622.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           GB8 horse 4]
 gi|243062474|gb|EES44660.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           PRL-20]
          Length = 303

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|289192450|ref|YP_003458391.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
           FS406-22]
 gi|288938900|gb|ADC69655.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
           FS406-22]
          Length = 228

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 9/155 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   N+G +AR M NF   +LR+V  R    +E A   + +A  ++D+ + +  
Sbjct: 5   VILVNPKYSGNVGSIARVMMNFGFEELRIVGDRSIINNE-AYMMAVHAREILDNAKFYKT 63

Query: 77  LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGL 132
             EAI DL F+ AT+     +RN  +  + PKE A    ++I   + NVGI+FGRE  GL
Sbjct: 64  FDEAIEDLDFVIATSGARGGDRNLKRVPITPKELA----DKILEVKGNVGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            NEEI   + ++S P +  +P +N+S AV ++++E
Sbjct: 120 RNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYE 154


>gi|167903380|ref|ZP_02490585.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei NCTC 13177]
          Length = 303

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|318040301|ref|ZP_07972257.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 241

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 2/239 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   NF + QLRLV PR      +AR  + + + +++  +++ 
Sbjct: 4   AVVLVEPAGPLNVGSVARLCANFAIDQLRLVAPRCDHLGAEARQMAVHGEALLEQAQLYP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L  AIAD   + AT+ R       +  P  A   L +         ++FGRE  GL+N 
Sbjct: 64  DLAAAIADCQRVVATSGRIETESLPLSEPAPALRWLWQGSRGDAGAALVFGREDRGLSNA 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  +  ++    +  + SLN+S AV + + E ++    +      +      +G L + 
Sbjct: 124 ELLQAGRLVRLATSEAYASLNLSHAVAICLHE-LQACRTTERTEPADLGNLCERGALEAT 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           L   E  L E G+  P     +M   L ++  R ++   EV LLRG+V  L   +RQ +
Sbjct: 183 LADAEALLLEVGFLYPHTAAARM-AKLRALLQRAQVQEPEVALLRGMVRQLRWAARQGT 240


>gi|134277341|ref|ZP_01764056.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 305]
 gi|134250991|gb|EBA51070.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 305]
          Length = 303

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|126441973|ref|YP_001059578.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126221466|gb|ABN84972.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 668]
          Length = 303

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAQIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13]
 gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13]
          Length = 243

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG  ARA+      QL L+NP + +P E A + ++ A  ++   +V S+L+E  AD + 
Sbjct: 23  NIGSTARAIKTMGFAQLSLINP-EKFPHEDADALASGAKDLLQHAQVASSLEEVTADCNV 81

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAII 144
           +   TAR R   +  L+ +E A    ++I   +N    ++FG E  GL NEEI   + + 
Sbjct: 82  LIGFTARKRELTQEHLSIEEIA----QKIIELKNNKFALLFGNETSGLKNEEIQHCHYLA 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
               N  + SLN+SQAV +  +E  +N          ++   AT  E   F ++LE +L 
Sbjct: 138 YIDANKEYSSLNLSQAVQVTAYELRKNFNKKEFDVAIKEKKLATFEEQNGFYEHLESTLN 197

Query: 205 ERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           E G+   ++  K+++  L  +F R ++  +EV +LRGI++ + K
Sbjct: 198 ELGFLEKIQ-GKRLMHRLRLMFNRIQMDEDEVNILRGILNQISK 240


>gi|150400087|ref|YP_001323854.1| RNA methyltransferase [Methanococcus vannielii SB]
 gi|150012790|gb|ABR55242.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           vannielii SB]
          Length = 234

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 114/193 (59%), Gaps = 10/193 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NFN+++LR+V   D   ++ A   + +A  ++ + + + 
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFNVSELRIVGNSDILDND-AYIRAVHAKDILKNAKFYK 62

Query: 76  NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +L  A++D+    ATT     +RN  +  + P+E A   N++   G  +GI+FGRE  GL
Sbjct: 63  SLSNAVSDIDVTVATTGAVSGDRNIKRIPITPRELA--KNQKENEGT-LGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGE 191
            NE++ L + ++S P +  +P +N+S AV ++++E    S+ S    N++ +N    + E
Sbjct: 120 KNEDVELCDILVSVPTSEKYPIMNLSHAVSVILYEIYYESVSSDIPYNLRMKNASKIEKE 179

Query: 192 LL--SFLDYLEIS 202
           +L   F ++++IS
Sbjct: 180 MLLRFFNEFVDIS 192


>gi|194477215|ref|YP_002049394.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
 gi|171192222|gb|ACB43184.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
          Length = 255

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 12/249 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV P    N+G VAR   NF + +LRLV P        A+  + +   +++   ++ 
Sbjct: 8   VLVLVQPAGPINVGSVARLCANFGIDELRLVAPCCNPIDMAAKQMAVHGTSILNRALIYP 67

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  A+AD   + A + R      +   P+EA   L      G +  ++FGRE  GL+N 
Sbjct: 68  NLVSALADCRRVVACSGRINKEVLTTNVPEEALSWLLTTEVDGPS-ALVFGREDRGLSNN 126

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-----NSIVSSEKNVKEQNT----- 185
           E+ L+  ++    +P + S+N+S AV ++++E  +     N    ++ ++  Q+T     
Sbjct: 127 ELLLAGKVLKLITSPQYTSINLSHAVAIILYELEKIRNSSNHTSIAKGDLCLQSTMILED 186

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT+  L  FL   E+ L + G+  P   + +M   L ++  R ++   EV LLRG+V  
Sbjct: 187 PATRLALEGFLSDTELLLLKVGFLYPNTARARM-KKLKTLLQRSQITGGEVSLLRGMVRQ 245

Query: 246 LDKFSRQSS 254
           L   +R+ S
Sbjct: 246 LHWANRRHS 254


>gi|261212154|ref|ZP_05926440.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
 gi|260838762|gb|EEX65413.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
          Length = 243

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 131/239 (54%), Gaps = 15/239 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ ++   
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIVPT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P++      E++    S   V ++FGRER GLT
Sbjct: 66  LEAAVADCGLVVGTSARSRTLDWPMLEPRQCG----EKLIAEASQHTVAMVFGRERTGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATK 189
           N+E+ L +  +  P NP + SLN++ AV L+ +E +  + ++ ++N ++    Q  P  +
Sbjct: 122 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYE-VRMAFLAMDQNQRQEQRDQEYPRHQ 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            EL  F ++LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 181 -ELELFYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 237


>gi|225024719|ref|ZP_03713911.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC
           23834]
 gi|224942514|gb|EEG23723.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC
           23834]
          Length = 268

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 23/236 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNP--------------------RDGWPSEKARSSSANADC 66
           NIG  ARAM    L +L LV P                        P E    +S   D 
Sbjct: 26  NIGAAARAMKTMGLNRLTLVAPNLMATPMTPEPPTFDAAQAAAFQLPEESFILASGARD- 84

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V++  ++ ++L EA+AD     A T+R R     +  P+E    L +    G  V ++FG
Sbjct: 85  VLEQAQIVASLDEALADTVLSCALTSRRRELSAPLHTPRELVPELLQAAQQGFQVALVFG 144

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E +GL  +E+   N +++   NP + SLN++QAV ++ +E    + +   + +++ +TP
Sbjct: 145 NETFGLNIDEVQRCNRLLTISGNPAYFSLNLAQAVQVVCYEIFSQTGIGMSQ-LQQAHTP 203

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           AT+ +    +D+LE  +E+ G F     +++M+  L+S+F R    RE++ LLRG+
Sbjct: 204 ATQSQTRGMVDHLEQIIEQTG-FANRRNQERMMRRLHSLFDRASPSREDIDLLRGL 258


>gi|76809515|ref|YP_334074.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|254261703|ref|ZP_04952757.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710a]
 gi|76578968|gb|ABA48443.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710b]
 gi|254220392|gb|EET09776.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710a]
          Length = 346

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 68  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 127

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 128 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 186

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 187 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 246

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 247 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 296


>gi|159905005|ref|YP_001548667.1| RNA methyltransferase [Methanococcus maripaludis C6]
 gi|159886498|gb|ABX01435.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C6]
          Length = 234

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 95/155 (61%), Gaps = 7/155 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NF++ +LR+V   D    E+A   + +A  ++++ + +S
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVGTSD-ILDEEAYIRAVHAKNILNNAKFYS 62

Query: 76  NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            L++AI D+ F  ATT     +RN  +  + P+E A    + +    ++GI+FGRE  GL
Sbjct: 63  KLEDAIFDIDFTVATTGAVCGDRNINRVPVTPRELA---KKHLDLNGSLGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            NE++   + ++S P +  +P +N+S AV ++++E
Sbjct: 120 KNEDVEFCDILVSVPTSNKYPIMNLSHAVSVLLYE 154


>gi|237812913|ref|YP_002897364.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei MSHR346]
 gi|237505076|gb|ACQ97394.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei MSHR346]
          Length = 338

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 68  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 127

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 128 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 186

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 187 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPPDAALGTLAQSDEI 246

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 247 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 296


>gi|53723764|ref|YP_103289.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|254209320|ref|ZP_04915666.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           JHU]
 gi|52427187|gb|AAU47780.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 23344]
 gi|147750093|gb|EDK57164.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           JHU]
          Length = 306

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 36  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 95

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 96  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLSNE 154

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 155 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 214

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 215 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 264


>gi|269962423|ref|ZP_06176773.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
 gi|269832919|gb|EEZ87028.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
          Length = 239

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 19/241 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  +  +  + S 
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAQNAAIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L+EAI D   +  ++AR+R     +L P+E      +    GQ   V ++FGRER GLTN
Sbjct: 66  LEEAIEDCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGQKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPAT----- 188
           +E+   +  +  P NP + SLN++ AV  + +E     +  +  N+++ Q TP+      
Sbjct: 123 DELQKCHYHVCIPANPEYSSLNLAMAVQTLSYE-----VRVAHLNLEQSQYTPSEPEEYP 177

Query: 189 -KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              EL  F ++LE  + E  +    E+  ++++ L  ++ R     +E+ +LRG+++ ++
Sbjct: 178 RHKELEMFFEHLEKVMVETQFINK-EQPGQVMNKLRRLYSRARPEAQELNILRGVLTAIE 236

Query: 248 K 248
           K
Sbjct: 237 K 237


>gi|150403255|ref|YP_001330549.1| RNA methyltransferase [Methanococcus maripaludis C7]
 gi|150034285|gb|ABR66398.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C7]
          Length = 234

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NF++ +LR+V   +    E+A   + +A  ++++ + +S
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVGNSE-ILDEEAYIRAVHAKNILNNTKFYS 62

Query: 76  NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            L++AI D+ F  ATT     +RN  +  + P+E A    + +    ++GI+FGRE  GL
Sbjct: 63  TLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELA---KKHVELNGSLGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            NE++ L + ++S P +  +P +N+S AV ++++E
Sbjct: 120 KNEDVELCDILVSVPTSNKYPIMNLSHAVSVLLYE 154


>gi|167563307|ref|ZP_02356223.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           oklahomensis EO147]
 gi|167570479|ref|ZP_02363353.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           oklahomensis C6786]
          Length = 291

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 9/232 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 36  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEALAMASGADDVLASAHVVP 95

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA     ++ +G ++ ++FG ER GL+NE
Sbjct: 96  TLADALNGVQWSIALTARSREYGPPRLAPRAAAASARRQLQTG-DIALVFGNERTGLSNE 154

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----TPATKGE 191
            +   +AI   P NP + SLN++QAV ++ +E +  +++  + +V  ++    T A   E
Sbjct: 155 HVDRCSAIAHIPANPAYSSLNLAQAVQVLAYE-LRVALLEDDASVMPRDAALGTLAQSDE 213

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI 
Sbjct: 214 IERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIA 264


>gi|262376214|ref|ZP_06069444.1| rRNA methylase [Acinetobacter lwoffii SH145]
 gi|262308815|gb|EEY89948.1| rRNA methylase [Acinetobacter lwoffii SH145]
          Length = 282

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 17/243 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A  +I+ + +   
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGATDLIEQIEIVET 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNE 135
           L++AI D   ++ T+AR+R     +L  + AA   +   +   Q V I+FGRE  GLTNE
Sbjct: 77  LEDAIKDCQIVFGTSARSRTIPWPLLDVRPAAEKAMTAVVQDQQEVAILFGREDRGLTNE 136

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVK-----------E 182
           E+A++N  ++ PVN  +  LN++QA+ ++ +E    ++  +   ++ K           E
Sbjct: 137 ELAMANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATMSQIEQPRDAKATMQVIDGIEME 196

Query: 183 QNTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            + P     ++  F  +LE  L E  +  P +  + +   L  +F R +L R E  LLRG
Sbjct: 197 WDEPLVNHAQMEQFYPHLEKMLAEIEFMDP-KNPRLLPLRLRRLFGRIQLDRMEYHLLRG 255

Query: 242 IVS 244
           I S
Sbjct: 256 IFS 258


>gi|207722898|ref|YP_002253332.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588082|emb|CAQ18662.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 287

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 13/241 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
           +LV+     N+G  ARA+      +     LV PR  D      A + ++ AD V+   R
Sbjct: 29  VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMASGADDVLAGAR 88

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V  ++ EA+A      A TAR R      + P+  A  +   + S    V  +FG ER+G
Sbjct: 89  VVDDIGEALAGAALTIALTARPREFGPRRIGPRVVAEEVAALLASPDATVAFVFGNERYG 148

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------KNVKEQNT 185
           L N+ +   + +   P NP + SLN+SQAV L+ +E     +  +         V     
Sbjct: 149 LPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRIDGVGFVGE 208

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  ++     +LE  L E G+  P +  KK++  L  +F R +L  EEV +LRGI   
Sbjct: 209 PATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267

Query: 246 L 246
           +
Sbjct: 268 M 268


>gi|260776734|ref|ZP_05885629.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607957|gb|EEX34222.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 241

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 7/235 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    LT L LV+P+     +    ++  AD ++ +  + + 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCEIDEQAIALAAGAAD-IVQAALIVNT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD   +  ++AR+R     +L P+E      E+    Q V ++FGRER GLTNEE
Sbjct: 66  LNDAVADCSLVVGSSARSRTLEWPMLEPRECGKKFVEQGAMSQ-VALVFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGELL 193
           +   +  +  P NP + SLN++ AV  + +E +  + +  +++  + N  A      EL 
Sbjct: 125 LQTCHYHVCIPANPEYSSLNLAMAVQTLSYE-VRMAYLEKQQSQYQPNEVAEYPRHKELE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            F  +LE  +  +  F   E+  K+++ L  +F R     +E+ +LRG++++++K
Sbjct: 184 MFFSHLE-KVATKTQFISDEQPGKVMNKLRRLFNRARPEAQELNILRGVLTSIEK 237


>gi|77361588|ref|YP_341163.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876499|emb|CAI87721.1| putative tRNA/rRNA methyltransferase (trmH family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 241

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 122/235 (51%), Gaps = 8/235 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM    L++L LV+P     S  A + +A A  V+ +  +   
Sbjct: 8   VVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSH-ASALAAGASDVLGNAVIVDT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + +AIAD      T+AR+R     ++ P+E    L     +G  V ++FGRE  GL+N+E
Sbjct: 67  VADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVSEAVNGP-VALVFGRENSGLSNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGELLS 194
           + L N  +  P NP + SLN++ AV  + +E     +    K  +E +T  P++K   L 
Sbjct: 126 LQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKIAEEDDTVYPSSKQTEL- 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKM-LDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE +L   G+   +++   M +  L  +F R      E+ +LRGI+++++K
Sbjct: 185 FYGHLEETLFNTGFI--IKQHPGMVMTKLRRMFNRARPEDAEMNILRGILTSINK 237


>gi|119494568|ref|ZP_01624706.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
 gi|119452100|gb|EAW33310.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
          Length = 317

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 24/263 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G VAR + N  L QL  VNP+     E+A+  + +A  ++++  + + 
Sbjct: 11  IILVEPAGALNVGSVARILKNMGLQQLVFVNPQCDPQCEEAQRMAVHAADLLETATITAT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+       ATTAR R+    +  P+     L E         +IFG E  GL+NEE
Sbjct: 71  LPEALTGCQRAIATTARKRSLETPLEHPRHGLGWLLE-----TPSALIFGPEDRGLSNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME----NSIVSSE--------KNVKEQN 184
           +  +   +  P +  +P+LN++QAV +  +E  +    N  +S+E        + V    
Sbjct: 126 LKYAQRFVRIPSSSAYPALNLAQAVAVCCYELSQLANVNPNISAEDLSASAASRPVSSPI 185

Query: 185 TPATK---GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            PA+      L  F ++LE  L   GY  P     +M +    +F R +L + EV +LRG
Sbjct: 186 QPASSVPLERLEGFYEHLETLLLNIGYLYPHTAASRM-EKFRRLFNRADLSQTEVNMLRG 244

Query: 242 IVSTLD---KFSRQSSRRNNVLL 261
           I+S ++     ++QS   ++ L+
Sbjct: 245 ILSQMEWALNSTQQSGTVDDTLI 267


>gi|254228672|ref|ZP_04922096.1| rRNA methylase [Vibrio sp. Ex25]
 gi|262395131|ref|YP_003286985.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
 gi|151938851|gb|EDN57685.1| rRNA methylase [Vibrio sp. Ex25]
 gi|262338725|gb|ACY52520.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
          Length = 239

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 125/237 (52%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  +  + ++   
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDEQTLALAAGAGDIAQNAKIVGT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L+EA+ D   +  ++AR+R     +L P+E      +    G+   V ++FGRER GLTN
Sbjct: 66  LEEAVEDCSLVVGSSARSRTLEWPMLEPRECG---EKFAVEGRKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KGE 191
           EE+   +  +  P NP + SLN++ AV  + +E +  + ++ E++    N P       E
Sbjct: 123 EELQRCHYHVCIPANPEYSSLNLAMAVQTLSYE-VRVAHLNLEQSQFAPNEPEEYPRHRE 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F ++LE  + E  +    E+  ++++ L  +F R     +E+ +LRGI+++++K
Sbjct: 182 LEMFFEHLEKVMVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGILTSIEK 237


>gi|209527558|ref|ZP_03276059.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
           CS-328]
 gi|209491981|gb|EDZ92335.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
           CS-328]
          Length = 255

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 21/241 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  AR M N  LTQ+ LVNP     S +A++ + +A  V++S ++  +
Sbjct: 15  IVLVEPAGALNVGSCARVMKNMGLTQMVLVNPHCDPMSCEAKTMAVHAQDVLESAQIVDS 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+       ATTAR+R+  +++  P+     L           +IFG E  GL+N E
Sbjct: 75  LPPALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLH-----SPAALIFGPEDRGLSNTE 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----------P 186
           +  +  I+  P +  + SLN++QAV +    C E S+  S + + +QNT           
Sbjct: 130 LNYAQRIVRIPSSSAYESLNLAQAVAVC---CYELSL--SAQTLIDQNTLPSPEPSEPLS 184

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  +L  +   LE  L + GY  P     +M +    +F R +    EV +LRG++S +
Sbjct: 185 ATLDQLEGYYQQLETLLLKIGYVYPHTVSSRM-EKFRHLFNRAQPSSTEVAMLRGVISQV 243

Query: 247 D 247
           +
Sbjct: 244 E 244


>gi|218960366|ref|YP_001740141.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729023|emb|CAO79934.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 278

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +ILV+P  G N+G +AR M NF  + LR+V      P +     + +++ ++++V ++S
Sbjct: 11  AVILVEPIYGGNVGAIARIMHNFCFSDLRIVGK---VPEKNDFYLAMHSEEILENVNIYS 67

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L++AI  L  + A + R   N      P + A  ++       N+G++FGRE +GLT+ 
Sbjct: 68  TLEDAINGLDRVIAFSRRLGKNKPVDFTPGQMAKYVHS--LPDSNIGLVFGRETYGLTDS 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E  L      F  NP FPSLN++QAV L +WE         +K  K  N+ + K EL   
Sbjct: 126 EAELCPLRCHFMANPSFPSLNLAQAVALALWEIYSLPWEEKQKGKKYYNSASGK-ELDEI 184

Query: 196 LDYLEISLEERGYFR 210
            +Y+   + + G+F+
Sbjct: 185 RNYILEVMRQCGFFQ 199


>gi|153824534|ref|ZP_01977201.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|149741752|gb|EDM55781.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 244

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191
           NEE+ L +  +  P NP + SLN++ AV L+ +E      ++  S ++   Q       E
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLAMQQSSQSSTLQEEYPRHQE 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 183 LERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|166364610|ref|YP_001656883.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166086983|dbj|BAG01691.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 266

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 4/235 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G  AR M N  L++L +VNP      E+AR  + +   V+++    + 
Sbjct: 17  IILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILGEEARRMAVHGIEVLENCSRVAT 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+   H I ATT++ R+    +  P+ A   L   +       +IFG E  GL+N E
Sbjct: 77  LGEALQGCHRIIATTSKPRHLNTPLETPRAALPWL---LTPNLESALIFGPEDRGLSNSE 133

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +  +   +  P NP + SLN++QAV +  +E  + +  +  +   E    AT   L  + 
Sbjct: 134 LNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQRATENRLEPPLETPPNATFEALEGYY 193

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            +LE  L + GY  P     +M +     + R     EE+ LLRGI+  ++   +
Sbjct: 194 QHLESFLLKIGYLYPHTAAARM-EKFRQFYHRARPTVEELALLRGIIGHIESIGQ 247


>gi|15669668|ref|NP_248481.1| hypothetical protein MJ_1476 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018437|sp|Q58871|Y1476_METJA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MJ1476
 gi|1592115|gb|AAB99481.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 230

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 9/155 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   N+G +AR M NF   +LR+V  +    +E A   + +A  ++D+ + ++ 
Sbjct: 7   VILVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIINNE-AYMMAVHAREILDNAKFYNT 65

Query: 77  LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGL 132
             EAI DL F+ AT+     +RN  +  + PKE A    ++I   + N+GI+FGRE  GL
Sbjct: 66  FDEAIGDLDFVIATSGARGGDRNLKRVPITPKELA----DKILEVKGNIGIVFGREDDGL 121

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            NEEI   + ++S P +  +P +N+S AV ++++E
Sbjct: 122 RNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYE 156


>gi|300704468|ref|YP_003746071.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
 gi|299072132|emb|CBJ43464.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 287

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 13/241 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
           +LV+     N+G  ARA+      +     LV PR  D      A + ++ AD V+   R
Sbjct: 29  VLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMASGADDVLAGAR 88

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V  ++ EA+A      A TAR R      + P+ AA  +   + S    V  +FG ER+G
Sbjct: 89  VVDDIGEALAGASLTIALTARPREFGPRRIGPRVAAEEVAALLASPDATVAFVFGNERYG 148

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEK--NVKEQNT 185
           L N+ +   + +   P NP + SLN+SQAV L+ +E     + ++     +   +     
Sbjct: 149 LPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDTRVDGIGFVGE 208

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PAT  ++     +LE  L E G+  P +  KK++  L  +F R +L  EEV +LRGI   
Sbjct: 209 PATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEEVNILRGIAKR 267

Query: 246 L 246
           +
Sbjct: 268 M 268


>gi|317970456|ref|ZP_07971846.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CB0205]
          Length = 239

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 12/244 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   NF++ +LRLV PR      +AR  + + + +++  ++F 
Sbjct: 4   AVVLVEPAGPLNVGSVARLCANFSVDELRLVAPRCDHLGNEARLMAVHGEALLEQAQLFP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFSGQNVGIIFGRERWGLT 133
            L+ A+AD   + AT+ R       +  P EA   +  +E         ++FGRE  GL+
Sbjct: 64  TLEAALADCRRVVATSGRIEEEALPLNGPAEALSWLQASETDAPSAPAALVFGREDRGLS 123

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N E+  +  I+    +  + S+N+S AV + + E     +         Q  P  + +L 
Sbjct: 124 NAELLQAGRILRLETSEAYASMNLSHAVAVCLHE-----LRRCPAPTAPQPEPCQREQLE 178

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           + L   E  L E G+  P   + +M   L ++  R E+  EEV LLRG+V  L    R +
Sbjct: 179 AALSDAEELLLEVGFLYPHTAQARM-AKLRALLQRAEIRDEEVALLRGMVRQL----RWA 233

Query: 254 SRRN 257
           S+R+
Sbjct: 234 SQRD 237


>gi|330835848|ref|YP_004410576.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
 gi|329567987|gb|AEB96092.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
          Length = 232

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 105/188 (55%), Gaps = 22/188 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   N+G +AR   NF++ QL +VNP+     +KA+  SA  +  ++  +V   
Sbjct: 4   VILVEPEGEYNVGFIARLCKNFDVDQLYIVNPK--CDLDKAKQFSAKGNTFLERAKVVDK 61

Query: 77  LKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L++AI DL    +T++      +  +  +AP E + ++  R      VG++FGRE  GLT
Sbjct: 62  LEDAIEDLDLKISTSSIADSKGDMLRKSMAPWEISSLIGRR-----QVGLVFGRESVGLT 116

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----VSSEKNVKEQNTPATK 189
            EEIA+++ ++  P N  +P LN+S AV ++++E  ++ +    +S++ NV         
Sbjct: 117 REEIAMTDIMVFIPANRDYPVLNLSHAVSIILYELWKSKVNENRISNDMNV--------S 168

Query: 190 GELLSFLD 197
            E L F+D
Sbjct: 169 SETLGFID 176


>gi|219847182|ref|YP_002461615.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219541441|gb|ACL23179.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 235

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 1/158 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +G V+IL  PQ   NIG V RAM N    +LRLV P    P   A + +   D V+  + 
Sbjct: 2   EGIVVILHRPQDPRNIGAVVRAMLNTGFQRLRLVEPPPFDPDLIA-AVAHRPDPVLTRLT 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + S+L +A AD+ ++  T+ R   N       ++ A+ L+ R      V ++FG E  GL
Sbjct: 61  IHSDLADATADIRYLVGTSDRPHLNLPWRNDVRQWAVELHRRATVAGPVALLFGPEDNGL 120

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + EE++  + II  P+NP +P+LN++QAVLL+++E  +
Sbjct: 121 SREELSRCHEIIGLPINPAYPTLNLAQAVLLILYELQQ 158


>gi|330826303|ref|YP_004389606.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
           K601]
 gi|329311675|gb|AEB86090.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
           denitrificans K601]
          Length = 270

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 123/260 (47%), Gaps = 28/260 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
            IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V++  R
Sbjct: 15  FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLERAR 72

Query: 73  VFSNLKEAIADLHFIYAT--TARN--------RNNFKSVLAPK---------EAAIVLNE 113
           + + L EA+  +  + AT  T R+        R +F+ +L  +         EA   +N 
Sbjct: 73  IVATLDEALDGMSHLCATAMTPRDFGPPTRTPRQHFEMLLKNELQALGGRAIEADSAINP 132

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              SG  V  +FG ER+G+ NE++   +  +S P NP F SLN+  AV ++ +E  +   
Sbjct: 133 EPESG--VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVVAYEWRQALG 190

Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
             + +    Q   A   +L   L + E +L   G+  P    KK++  L  +F R +L +
Sbjct: 191 GFAVQESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQ 249

Query: 234 EEVFLLRGIVSTLDKFSRQS 253
           EE+ +LRG+  ++ + +R S
Sbjct: 250 EEIHILRGVAKSMLQAARPS 269


>gi|254525547|ref|ZP_05137599.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9202]
 gi|221536971|gb|EEE39424.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9202]
          Length = 249

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 16/247 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S +A+  +      + + +VF +
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCEIFSLEAKKMALKGQKFLKNCKVFDD 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------QNVGIIFGRER 129
           L++AI D   + A+  R       +   K++  V +E IF          N+ IIFGRE 
Sbjct: 72  LQKAIFDCDLVLASCGR-------IDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGRED 124

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLTN E+ L+N   + P +   PSLN+S AV ++++E  ++S  +    +K  N  ++K
Sbjct: 125 RGLTNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSK 184

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
               +F++  E+ L   GY      K K +    +  +R      E+ +LRGIV  ++ F
Sbjct: 185 EVYDTFVEIEEMLL-RVGYLLKHTSKVK-ISKFKNFILRANTSIHELNVLRGIVHQINWF 242

Query: 250 SRQSSRR 256
              S ++
Sbjct: 243 LNNSKKK 249


>gi|319761837|ref|YP_004125774.1| RNA methyltransferase, trmh family, group 1 [Alicycliphilus
           denitrificans BC]
 gi|317116398|gb|ADU98886.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
           denitrificans BC]
          Length = 270

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 28/258 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
            IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+++ R
Sbjct: 15  FILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLENAR 72

Query: 73  VFSNLKEAIADLHFIYAT--TARN--------RNNFKSVLAPK---------EAAIVLNE 113
           + + L EA+  +  + AT  T R+        R +F S+L  +         EA   +N 
Sbjct: 73  IVATLDEALDGISHLCATAMTPRDFGPPTRTPRTHFDSLLKNQLPALDGRALEADSAMNH 132

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              +G  V  +FG ER+G+ NE++   +  +S P NP F SLN+  AV ++ +E  +   
Sbjct: 133 GPEAG--VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVIAYEWRQALG 190

Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
                    Q   A   +L   L + E +L   G+  P    KK++  L  +F R +L +
Sbjct: 191 GFGVPESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQ 249

Query: 234 EEVFLLRGIVSTLDKFSR 251
           EE+ +LRG+  ++ + +R
Sbjct: 250 EEIHILRGVAKSMLQAAR 267


>gi|163802460|ref|ZP_02196353.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159173761|gb|EDP58576.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 239

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 17/240 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL LV P+     ++  + +A A  +  +  V S 
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVEPQ-CEVDDQTLALAAGAGDIAQNATVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L+EAIAD   +  ++AR+R     +L P+E      +    GQ   V ++FGRER GLTN
Sbjct: 66  LEEAIADCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGQKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC------MENSIVSSEKNVKEQNTPAT 188
           +E+   +  +  P NP + SLN++ AV  + +E       +E S  +   N  E+  P  
Sbjct: 123 DELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAP--NAVEE-YPRH 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K EL  F ++LE  L +  +    E+  ++++ L  ++ R     +E+ +LRG++S ++K
Sbjct: 180 K-ELEMFFEHLEKVLVDTQFINK-EQPGQVMNKLRRLYSRARPETQELNILRGVLSAIEK 237


>gi|298529619|ref|ZP_07017022.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511055|gb|EFI34958.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 252

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 93/182 (51%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL  P+  EN+G VARA  N   ++L +   +   P   A  +++    ++ S   + 
Sbjct: 5   AVILCRPKYSENVGSVARACINMGCSRLIIAGSQTFDPQRAAPLATSRGAELLRSTEHYP 64

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL++A+   H ++AT+AR     K V  P +AA  +       Q+  ++FG E  GL N 
Sbjct: 65  NLEQALKGFHRVFATSARVGGWRKGVFLPWQAAQEIMRPETLDQDTALVFGPEDKGLANH 124

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           EI L   IIS P      SLN+SQAVLL+++EC ++   +  +++   ++P    E +  
Sbjct: 125 EIELCPRIISIPTTSQAWSLNLSQAVLLVLYECFKHVPAARTRHIPSWDSPPVTQEQMQL 184

Query: 196 LD 197
           L 
Sbjct: 185 LH 186


>gi|159028241|emb|CAO88051.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 266

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 4/235 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G  AR M N  L++L +VNP     +E+AR  + +   V+++    + 
Sbjct: 17  IILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILAEEARRMAVHGIEVLENCSQVAT 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+   H I ATT++ R+    +  P+ A   L   +       +IFG E  GL+N E
Sbjct: 77  LGEALQGCHRIIATTSKPRHLNTPLETPRTALPWL---LTPNLESALIFGPEDRGLSNSE 133

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +  +   +  P NP + SLN++QAV +  +E  + +  +  +   E    AT   L  + 
Sbjct: 134 LNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQMATENRLEPPLEMLPNATFEALEGYY 193

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            +LE  L + GY  P     +M +     + R     EE+ LLRGI+  ++   +
Sbjct: 194 QHLESFLLKIGYLYPHTAAARM-EKFRQFYHRARPTVEELALLRGIIGHIESIGQ 247


>gi|220935230|ref|YP_002514129.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219996540|gb|ACL73142.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 247

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 128/242 (52%), Gaps = 9/242 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L+      NIG  ARAM    L+ LRLV+P   +PS +A + ++ AD ++    V+ +
Sbjct: 9   IVLIQTSHPGNIGASARAMKTMGLSDLRLVSPVR-YPSAEATAMASGADDLLAGTPVYED 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+     +  T+AR R+     L P+EAA  L E     + V ++FGRE+ GL+NEE
Sbjct: 68  LDEALTGCRLVMGTSARQRSLRWPQLNPREAAAALIEAAAQ-RPVALLFGREQSGLSNEE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI------VSSEKNVKEQNTPATKG 190
           +   +++++ P N  + SLN++ AV ++ +E    ++      V +  ++  ++ PA+  
Sbjct: 127 LDRCHSLVTIPANEAYSSLNLAAAVQVLSYELRMAALERQAPAVDTSADLAPEDQPASAE 186

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            L  F  +LE +L    +  P    + +L  L  ++ R      EV +LRGI++  +K  
Sbjct: 187 ALEDFYAHLERALIHLDFLDP-NNPRHLLRRLRRLYGRAVPTVSEVNILRGILTAAEKGP 245

Query: 251 RQ 252
           R+
Sbjct: 246 RR 247


>gi|332528697|ref|ZP_08404674.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332041763|gb|EGI78112.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 19/243 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS----ANADCVIDSVR 72
            IL++P    N+G  ARA+      +L LV PR  W +   R  +    + A+ V++  R
Sbjct: 9   FILIEPSHAGNVGAAARAIKTMGFEELVLVRPR--WANVLRRQETIERASGANDVLNRAR 66

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERW 130
           +   L EA+  +  + AT    R+      AP+E  A  V        Q +  +FG ER+
Sbjct: 67  IVETLDEALDGMTHLCATAMTPRDFGPPTRAPREHFAQFVAAAPTEESQGIAFLFGSERY 126

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           G+ NE++  ++  +S P +P F SLN++ A+ ++ +E  +     S +    +  PAT  
Sbjct: 127 GMKNEDVYRAHVCLSIPTHPRFGSLNLAAALQVIAYEWRQ---ALSARFGGFEIAPATAP 183

Query: 191 ELLS-------FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
            +L+        L +LE +L    +  P    KK++  L ++F R +L +EEV +LRG+ 
Sbjct: 184 SVLADAPQIAGLLTHLEQALVAVDFLDPA-APKKLMPRLNALFNRAQLTQEEVHILRGVA 242

Query: 244 STL 246
             +
Sbjct: 243 KAM 245


>gi|229525392|ref|ZP_04414797.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229338973|gb|EEO03990.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
           VL426]
          Length = 244

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 129/241 (53%), Gaps = 19/241 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190
           NEE+ L +  +  P NP + SLN++ AV L+ +E     +    SS+ +  ++  P  + 
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181

Query: 191 ELLSFLDYLE---ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           EL  F  +LE   I  E    F   ++  ++++ L  +F R     +EV +LRGI++++ 
Sbjct: 182 ELERFYAHLEQVIIQTE----FISAQQPGQVMNKLRRMFTRARPEAQEVNILRGILTSVQ 237

Query: 248 K 248
           K
Sbjct: 238 K 238


>gi|150400509|ref|YP_001324275.1| RNA methyltransferase [Methanococcus aeolicus Nankai-3]
 gi|150013212|gb|ABR55663.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus aeolicus
           Nankai-3]
          Length = 231

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 97/165 (58%), Gaps = 7/165 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVIILV+P+ G N+G ++R M NF + +L++V   +    ++A   + ++  ++++ + +
Sbjct: 3   PVIILVNPKYGGNVGAISRCMMNFGVNELKIVG-NNSIIDKEAEIRAVHSKKILNNAKFY 61

Query: 75  SNLKEAIADLHFIYATTA--RNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             L+EA+ D+ F   T+       N K + + PKE A     +   G+ +G++FGRE +G
Sbjct: 62  GTLQEALEDIDFAVGTSGAVSGDKNIKRIPITPKELA--EKHKTIDGR-LGLVFGREDYG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L N+E+ L +  +S P +  +P +N+S AV ++++E   +S+  S
Sbjct: 119 LYNDELELCDLFVSIPTSEDYPIMNLSHAVSIILYEIYNSSLEKS 163


>gi|149908845|ref|ZP_01897505.1| RRNA methylase, SpoU family [Moritella sp. PE36]
 gi|149808119|gb|EDM68060.1| RRNA methylase, SpoU family [Moritella sp. PE36]
          Length = 238

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 6/233 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM     TQL LV P      EK+ + +A A  V+++  +   
Sbjct: 7   VVLVGTSHPGNIGSAARAMKTMGFTQLVLVAPLCEI-DEKSVALAAGAADVLENATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+AD   +  T+AR+R     +L  +EA + L E +     V ++FGRER GLTNEE
Sbjct: 66  LEEAVADCGLVIGTSARSRTLQWPMLDSREAGLKLIEEV-PNYPVALVFGRERIGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS-F 195
           +      +    NP + SLN++ AV ++ +E     + ++     EQ  P  K E L  F
Sbjct: 125 LQKCTYHVCVAANPEYSSLNLAMAVQILTYETRMAYLATN--TYPEQENPYPKQEELEMF 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +LE +L + G+         M + L  +F R      E+ +LRG + ++ +
Sbjct: 183 HTHLEQTLWDSGFINKAHPGVVM-NRLRRLFTRARPETIELNILRGALVSIQR 234


>gi|262402869|ref|ZP_06079430.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
 gi|297581145|ref|ZP_06943069.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|262351651|gb|EEZ00784.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
 gi|297534461|gb|EFH73298.1| RNA methyltransferase [Vibrio cholerae RC385]
          Length = 244

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190
           NEE+ L +  +  P NP + SLN++ AV L+ +E     +    SS+ +  ++  P  + 
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|229513115|ref|ZP_04402581.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
 gi|229350008|gb|EEO14962.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
          Length = 244

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190
           NEE+ L +  +  P NP + SLN++ AV L+ +E     +    SS+ +  ++  P  + 
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPESQEINILRGILTSVQK 238


>gi|296108951|ref|YP_003615900.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           infernus ME]
 gi|295433765|gb|ADG12936.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           infernus ME]
          Length = 226

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 7/154 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P+ G N+G VAR M NF   +LR+V  R    +++A+  + +A  +++  + +  
Sbjct: 4   VILVHPKYGGNVGSVARVMKNFGFKELRIVGDRK-IINDEAKMMAVHAKDILEKAKFYET 62

Query: 77  LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              AI DL FI AT+     +RN  +  + P+E A  + E      N+G++FGRE  GL 
Sbjct: 63  FDSAIEDLDFIIATSGARGGDRNLKRVPITPRELAEKIKE---VRGNIGLVFGREDDGLY 119

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           NEE+   + ++S P +  +P +N+S AV ++++E
Sbjct: 120 NEELDKCDLLVSIPTSEEYPIMNLSHAVAVILYE 153


>gi|72382535|ref|YP_291890.1| RNA methyltransferase [Prochlorococcus marinus str. NATL2A]
 gi|72002385|gb|AAZ58187.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           NATL2A]
          Length = 245

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 126/230 (54%), Gaps = 6/230 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF++ +LRLV+P+  + +++A+  +     +++  +V+ +
Sbjct: 9   VILVEPAGPINVGSVARLCENFSVHELRLVSPKCDYLAQEAKKMAVRGLKILEKAKVYED 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI--VLNERIFSGQNVGIIFGRERWGLTN 134
           L  A++D   I AT  R  +    + + K+A    + +ER      + ++FGRE  GL+N
Sbjct: 69  LNSALSDCSRIIATCGRKEHGEIPLNSNKDALSWGLKSER---EDTIALVFGREDRGLSN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+  +N +IS   +  +PSLN+S AV +++ +  + + +   K   + ++PA   +L  
Sbjct: 126 EELLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKRHTKISSPANLIKLED 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            ++     L + G+      K KM   +  + +R E+  +EV L+RGI+S
Sbjct: 186 CINDAGSLLLDIGFLMKHTYKAKM-TKIKQLLLRGEIKDDEVALIRGIIS 234


>gi|254197328|ref|ZP_04903750.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei S13]
 gi|169654069|gb|EDS86762.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei S13]
          Length = 309

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 7/231 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LA + AA    +++ +G ++ ++FG ER GL+NE
Sbjct: 93  TLADALNGVQWSLALTARSREYGPPRLASRAAAASALQQVRTG-DIALVFGNERTGLSNE 151

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E  V       T A   E+
Sbjct: 152 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEI 211

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI 
Sbjct: 212 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIA 261


>gi|120556563|ref|YP_960914.1| putative RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120326412|gb|ABM20727.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
           VT8]
          Length = 226

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 3/189 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV+P++ EN+G  ARA+     ++L LVN  D     +A   +  +D ++D+ R+F 
Sbjct: 4   AFVLVEPKVPENVGAAARALCTMGFSELWLVN-SDLHTRPEAHWLAHGSDHILDNARIFP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L         +  T+A+ R++ +    P     VL  +  S     ++FGRE  GL NE
Sbjct: 63  DLAAVRNSADLLMGTSAKPRHHRQDWHEPGALRSVLANKGGSVATAALVFGREDRGLANE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL + +  FP+   +PSLN+SQAV+L  WE   + +     +  E  + A+ G L   
Sbjct: 123 ELALCDLLTGFPMAVSYPSLNLSQAVMLYAWEL--SGLARQSNSTPEVASDASLGALRQR 180

Query: 196 LDYLEISLE 204
           L+ L  +LE
Sbjct: 181 LETLLPALE 189


>gi|269965158|ref|ZP_06179292.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
 gi|269830144|gb|EEZ84371.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
          Length = 239

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L QL LV+P+     E+  + +A A  +  + ++   
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLNQLVLVDPQ-CEVDEQTLALAAGAGDIAQNAKIVGT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L+EA+ D   +  ++AR+R     +L P+E      +    G+   V ++FGRER GLTN
Sbjct: 66  LEEAVEDCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGRKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192
           EE+   +  +  P NP + SLN++ AV  + +E      ++  S+ +  E        EL
Sbjct: 123 EELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHREL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F ++LE  + E  +    E+  ++++ L  +F R     +E+ +LRG++++++K
Sbjct: 183 EMFFEHLEKVMVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGVLTSIEK 237


>gi|33600713|ref|NP_888273.1| methyltransferase [Bordetella bronchiseptica RB50]
 gi|33568313|emb|CAE32225.1| probable methyltransferase [Bordetella bronchiseptica RB50]
          Length = 258

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 14/242 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I+  P    N+G  ARA+      +L LV PR  D     +A + ++ A  V++   V  
Sbjct: 11  IMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHD 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133
            L+EA+A +   +A TAR R+        +EAA +    +   +   V I+ G ER GLT
Sbjct: 71  TLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQN 184
           N +I L + I   P NP + SLN++QA+ L  WE     +          SS +      
Sbjct: 131 NAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQPLLPASSAQQANPGA 190

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA    + + L + E +L   G+  P    KK++  +  +  R  L R+EV +LRG+ +
Sbjct: 191 APADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVCT 249

Query: 245 TL 246
            +
Sbjct: 250 AM 251


>gi|254169084|ref|ZP_04875921.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|197621923|gb|EDY34501.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 243

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 11/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+ V+PQ   NIG +AR M NF    L LVNP +    E A   S +A  +I++  + +N
Sbjct: 13  IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 70

Query: 77  LKEAIADLHFIYATTA---RNRNNFKSV-LAPKE-AAIVLNERIFSGQNVGIIFGRERWG 131
            +E    L ++ AT+    ++   FK + L P+E A  V N   FSG N+GI+FGRE +G
Sbjct: 71  FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWN---FSG-NIGIVFGRENYG 126

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           L NEEI   +++I+ P +  +P +NI+ A  ++++E  
Sbjct: 127 LYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIF 164


>gi|222110178|ref|YP_002552442.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
 gi|221729622|gb|ACM32442.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax ebreus
           TPSY]
          Length = 264

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 28/255 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
            IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+   R
Sbjct: 5   FILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHAR 62

Query: 73  VFSNLKEAIADLHFIYATTARNR-----------------NNFKSVLAPKEAAIVLNERI 115
           + + L EA+  +  + AT    R                 NN  S L  K     L  + 
Sbjct: 63  IVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARKP 122

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V  +FG ER+G+ NE++   +  +S P NP F SLN+  AV ++ +E  +     
Sbjct: 123 SPESGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALATR 182

Query: 176 SEKNVKEQNTP----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
            E    +++ P    A   ++   L + E +L   G+  P    KK++  L  +F R +L
Sbjct: 183 GEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQL 241

Query: 232 MREEVFLLRGIVSTL 246
            +EE+ +LRG+  ++
Sbjct: 242 TQEEIHILRGVAKSM 256


>gi|332708821|ref|ZP_08428792.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
 gi|332352363|gb|EGJ31932.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
          Length = 288

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G VAR M N  L+QL LVNP+    S+ A+  + +   +++  +V + 
Sbjct: 31  IVLVEPAGPLNVGSVARVMKNMGLSQLVLVNPQCDHLSQDAQQMAVHGVDILEKAQVVAT 90

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + + +       ATTAR+R    ++  P+ A   L   + +G    +IFG E  GL+N+E
Sbjct: 91  IPDGLVGCQRAIATTARSRAIPTTLEHPRTA---LPWLLSAGVTSALIFGPESRGLSNDE 147

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQN-TPATKGEL 192
           +  +   +  P +  +P LN++QAV +  +E  +  +  S      V  Q  +PA   + 
Sbjct: 148 LNHAQRFVRIPTSSTYPVLNLAQAVTVCCYELYQYQLYQSTHQPSPVPSQPLSPAPPYQD 207

Query: 193 LSFLD-------YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
            + LD       +LE  L + GY  P  K  +M + L  +  R     EE+ +LRG+V
Sbjct: 208 SAPLDLIERYSNHLEALLLKIGYLYPHTKAARM-EKLRRLLNRATPTTEEINMLRGMV 264


>gi|289595721|ref|YP_003482417.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|289533508|gb|ADD07855.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 235

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 11/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+ V+PQ   NIG +AR M NF    L LVNP +    E A   S +A  +I++  + +N
Sbjct: 5   IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 62

Query: 77  LKEAIADLHFIYATTA---RNRNNFKSV-LAPKE-AAIVLNERIFSGQNVGIIFGRERWG 131
            +E    L ++ AT+    ++   FK + L P+E A  V N   FSG N+GI+FGRE +G
Sbjct: 63  FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWN---FSG-NIGIVFGRENYG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           L NEEI   +++I+ P +  +P +NI+ A  ++++E  
Sbjct: 119 LYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIF 156


>gi|254168566|ref|ZP_04875409.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|197622400|gb|EDY34972.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 243

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 11/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+ V+PQ   NIG +AR M NF    L LVNP +    E A   S +A  +I++  + +N
Sbjct: 13  IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 70

Query: 77  LKEAIADLHFIYATTA---RNRNNFKSV-LAPKE-AAIVLNERIFSGQNVGIIFGRERWG 131
            +E    L ++ AT+    ++   FK + L P+E A  V N   FSG N+GI+FGRE +G
Sbjct: 71  FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWN---FSG-NIGIVFGRENYG 126

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           L NEEI   +++I+ P +  +P +NI+ A  ++++E  
Sbjct: 127 LYNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIF 164


>gi|123966380|ref|YP_001011461.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515]
 gi|123200746|gb|ABM72354.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 236

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 20/244 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           +V+P    NIG +AR   NF++ +LR+V+P+    S +A+  +      I++ RVF++++
Sbjct: 1   MVEPNGPINIGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGQKYINNCRVFNSIE 60

Query: 79  EAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTN 134
           +AI D   + AT  R + +N      P+    V+++ I S +   N+ I+FGRE  GLTN
Sbjct: 61  QAIFDCDLVLATCGRIDLSNDIECENPE----VISKWISSFKVINNLAILFGREDRGLTN 116

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            E+  ++ I +   +  +PSLN+S AV ++++E  + S  + +K++K  N  ++K    S
Sbjct: 117 SELLFAHKIFNIKTSQDYPSLNLSHAVAIILYELNKCSKNTPQKDLKVFNLASSKQIYES 176

Query: 195 FLDYLEI-----SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           F D  EI      L E   F  + K KK +       ++ +    E+ +LRGIV  +  F
Sbjct: 177 FKDLEEILIRTGYLLEHTSFSKISKFKKFI-------LKAKTSSHEINVLRGIVRQIKWF 229

Query: 250 SRQS 253
              S
Sbjct: 230 LNNS 233


>gi|145640333|ref|ZP_01795917.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|145274919|gb|EDK14781.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 205

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 10/184 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ +  + ++
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKS--IDEQSYALSAGAEDIVKNAMIVNS 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A+ +   +  T+AR R+   +++ P+E A   ++ I     + I+FGRER GLTNEE
Sbjct: 65  FDDAVKNCSLVIGTSARLRHLQNTLIEPRECA---DKVIAHKGKIAIVFGRERIGLTNEE 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPATKGEL 192
           +   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P T  +L
Sbjct: 122 LLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP-TADQL 180

Query: 193 LSFL 196
             FL
Sbjct: 181 AYFL 184


>gi|119476391|ref|ZP_01616742.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
           HTCC2143]
 gi|119450255|gb|EAW31490.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
           HTCC2143]
          Length = 226

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 12/225 (5%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M N  L QL LV P+  +P E+A   +A+A  ++D+  V   L++A+AD   +  T+AR 
Sbjct: 1   MKNMGLKQLYLVQPK-LFPHERAGWRAASAGDILDNAVVVDTLEDAVADCGLVVGTSARG 59

Query: 95  RNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
           R     ++ P+    V  ER++   +   V ++FGRE  GLTNEE+ + N  ++ P +  
Sbjct: 60  RRIPWPLVNPR----VCAERVYPELTEHPVALVFGREDRGLTNEELQVCNLHVNIPASED 115

Query: 152 FPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTPATKGELLSFL-DYLEISLEERGY 208
           + SLN+  AV ++ +E     +    S  +++E +T   K E +  L  +LE +L E  +
Sbjct: 116 YTSLNLGMAVQVVTYELRMAHLSGALSTDDMQEWDTKLAKSEDIERLFVHLEETLIEMQF 175

Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
            +P    K+++  L  +F R  +   EV ++RGI+S+  ++ R++
Sbjct: 176 LKP-SAPKQLMTRLRRLFNRTRMDDLEVQMMRGILSSSQQWVRKA 219


>gi|242399001|ref|YP_002994425.1| SpoU protein [Thermococcus sibiricus MM 739]
 gi|242265394|gb|ACS90076.1| SpoU protein [Thermococcus sibiricus MM 739]
          Length = 246

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 117/205 (57%), Gaps = 15/205 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   N+G +AR M NF +T L LVNP+    ++ AR+ + +A  ++++ ++  +
Sbjct: 5   VILVEPEYPINLGAIARVMKNFGVTDLILVNPKVSPNNKIARTFAVHAVDILENAKIHES 64

Query: 77  LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+EA+  +     T+     ++   ++ ++P+E A  L+  I+ G+ +G++FGRE  GL 
Sbjct: 65  LEEALNTVDLAIGTSGLAGGDYIPERAPISPEEFAKRLS--IYDGE-IGLVFGRESRGLD 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL- 192
           NEE+   +  ++ P +  +P +N+S AV ++++E  +  + ++   VK +   +T+ E  
Sbjct: 122 NEELKKLDFTVTIPTSEEYPIMNLSHAVAVILYEVFKQKLKNNPTEVKRRLRKSTRQERE 181

Query: 193 ------LSFLDYLEI--SLEERGYF 209
                   FLD LE    LE+R ++
Sbjct: 182 MLVEFWAKFLDTLEYPKDLEKRRFY 206


>gi|209694304|ref|YP_002262232.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|208008255|emb|CAQ78400.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 242

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 20/243 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73
           I+LV      NIG  ARAM    LT + LV P    DG    +A + +A A  + +  R+
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEVDG----QAIALAAGASDIANRARI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            S L EAI+D   +  ++AR+R     +L P+EA +   E   S   +  +FGRER GLT
Sbjct: 63  VSTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGVKAIEEAPS-HPIAFVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATK 189
           NEE+   +  +  P NP + SLN++ AV  + +E     +++     E   KE   P   
Sbjct: 122 NEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGES--KEAEYP-LN 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLD 247
            EL  F ++LE  + +  +       + M + +  +F   RPE+   E+  LRGI++ ++
Sbjct: 179 NELELFYEHLEKVMMDTDFINKAHPGQVM-NKMRRMFNRARPEI--HELRTLRGILTAVE 235

Query: 248 KFS 250
           + S
Sbjct: 236 RSS 238


>gi|33596879|ref|NP_884522.1| methyltransferase [Bordetella parapertussis 12822]
 gi|33573580|emb|CAE37574.1| probable methyltransferase [Bordetella parapertussis]
          Length = 258

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 14/242 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I+  P    N+G  ARA+      +L LV PR  D     +A + ++ A  V++   V  
Sbjct: 11  IMTQPSHPGNVGSAARAIKTTGFGELVLVAPRFPDMTAQPEAVTLASGALDVLERAAVHD 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133
            L+EA+A +   +A TAR R+        +EAA +    +   +   V I+ G ER GLT
Sbjct: 71  TLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQN 184
           N +I L + I   P NP + SLN++QA+ L  WE     +          SS +      
Sbjct: 131 NAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSLLPASSAQQANPGA 190

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA    + + L + E +L   G+  P    KK++  +  +  R  L R+EV +LRG+ +
Sbjct: 191 APADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVCT 249

Query: 245 TL 246
            +
Sbjct: 250 AM 251


>gi|312884217|ref|ZP_07743926.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367990|gb|EFP95533.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 241

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 122/239 (51%), Gaps = 9/239 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    LT L LV+P+     E+  + ++ A  +  + ++ S+
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCSV-DEQTMALASGAGEIAQNAKIVSS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA++D   +  ++AR+R     +L P+E      E   S   V ++FGRER GLTNEE
Sbjct: 66  LDEAVSDCQLVVGSSARSRTLEWPMLEPRECGRKFVEEGESSP-VALVFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +        +   P  +   E   
Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLEKERAAFPKAEIPEYSRHEEFEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKM--LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            L ++E  ++  G+    +  K M  L  L+S   RPE+  +E+ +LRG++++++K ++
Sbjct: 185 LLQHIEKVIKLTGFINDGQPNKVMTKLRRLFS-RARPEV--QEINMLRGVLTSVEKMNK 240


>gi|311696308|gb|ADP99181.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
          Length = 242

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV+P++ EN+G  ARA+      +L LVN  D     +A   +  +D ++D+ R+F 
Sbjct: 4   AFVLVEPKVPENVGAAARALCTMGFGELWLVN-SDLHTRPEAHWLAHGSDHILDNARIFP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L      +  +  T+A+ R+  +    P +   VL  +  S     ++FGRE  GL+NE
Sbjct: 63  DLAAVRNSVDLLMGTSAKTRHQRQDWHGPSDLRKVLATKGASVATAALVFGREDRGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL + +   P+   +PSLN++Q+V+L  WE    S +S   +++ +  PA    L + 
Sbjct: 123 ELALCDLLTGIPMKVTYPSLNLAQSVMLYAWEM---SGLSDAMDIRHE--PADDNRLGAL 177

Query: 196 LDYLEISLEE 205
              LE  L E
Sbjct: 178 RGRLETLLPE 187


>gi|323494811|ref|ZP_08099909.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
 gi|323310951|gb|EGA64117.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
          Length = 241

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 11/237 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L LV+P+     E+A + +A A  +  S  + + 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQAIALAAGAADIAQSATIVNT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+AD   +  ++AR+R     +L P+E      + +  GQN  V ++FGRER GLTN
Sbjct: 66  LSEAVADCALVVGSSARSRTLEWPMLEPRECG---EKFVAEGQNSPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGE 191
           +E+   +  +  P NP + SLN++ AV  + +E     +   +      +E   P  K E
Sbjct: 123 DELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLQHEQSQYAKPEEAEYPRHK-E 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE  + +   F   E+  K+++ L  +F R     +E+ +LRG+++ ++K
Sbjct: 182 LELFFTHLE-KVAKDTQFISEEQPGKVMNKLRRLFNRARPEAQELNILRGVLTAIEK 237


>gi|153829408|ref|ZP_01982075.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|148875128|gb|EDL73263.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
          Length = 244

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190
           N+E+ L +  +  P NP + SLN++ AV L+ +E     +    SS+ +  ++  P  + 
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPETQEINILRGILTSVQK 238


>gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1]
 gi|116062431|dbj|BAA79523.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 243

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 7/153 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+ +   N+G VAR   NF   ++ LV+PR     E+A+  +A A   +D+ RV SN
Sbjct: 6   IVLVETEGAVNLGFVARLAENFEADEIYLVSPRASL--EEAKRYAARAAWRLDAARVVSN 63

Query: 77  LKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+EA+  +     T++   +R+  ++ LAP EAA VL     +   V I+FGRE  GLT 
Sbjct: 64  LEEALRGVSASLCTSSHMSDRDALRAPLAPWEAAEVLAA---TPGTVAIVFGRESVGLTR 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            EIAL +   S P +P +PSLN+S A  + ++E
Sbjct: 121 GEIALCSLYSSIPASPRYPSLNLSNAAAIYLYE 153


>gi|15640765|ref|NP_230395.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591445|ref|ZP_01678721.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121729723|ref|ZP_01682164.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147675237|ref|YP_001216231.1| RNA methyltransferase [Vibrio cholerae O395]
 gi|153817241|ref|ZP_01969908.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|153822720|ref|ZP_01975387.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|229505640|ref|ZP_04395150.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
 gi|229510688|ref|ZP_04400167.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
 gi|229517810|ref|ZP_04407254.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
 gi|229530124|ref|ZP_04419514.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229608658|ref|YP_002879306.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254285464|ref|ZP_04960428.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|254847883|ref|ZP_05237233.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|255744553|ref|ZP_05418504.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
 gi|262161313|ref|ZP_06030424.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|262168806|ref|ZP_06036501.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
 gi|262190471|ref|ZP_06048722.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
 gi|9655191|gb|AAF93911.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546696|gb|EAX56875.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121628540|gb|EAX61023.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|126512157|gb|EAZ74751.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126519751|gb|EAZ76974.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|146317120|gb|ABQ21659.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|150424326|gb|EDN16263.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|227012570|gb|ACP08780.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|229333898|gb|EEN99384.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229344525|gb|EEO09499.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
 gi|229350653|gb|EEO15594.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
 gi|229357863|gb|EEO22780.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
 gi|229371313|gb|ACQ61736.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254843588|gb|EET22002.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|255737584|gb|EET92978.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
 gi|262022924|gb|EEY41630.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
 gi|262029063|gb|EEY47716.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|262033643|gb|EEY52132.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
 gi|327483533|gb|AEA77940.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae LMA3894-4]
          Length = 244

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190
           N+E+ L +  +  P NP + SLN++ AV L+ +E     +    SS+ +  ++  P  + 
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|197335335|ref|YP_002155372.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
 gi|197316825|gb|ACH66272.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
          Length = 241

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 16/239 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73
           I+LV      NIG  ARAM    LT + LV P    DG    +A + +A A  + ++ RV
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEVDG----QAIALAAGASDIANNARV 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EAI+D   +  ++AR+R     +L P+EA I   E   +   +  +FGRER GLT
Sbjct: 63  VDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPT-HPIAFVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATK 189
           NEE+   +  +  P NP + SLN++ AV  + +E     +++     E   KE + P   
Sbjct: 122 NEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGES--KEADYPLNH 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            EL  F ++LE  +    +       + M + +  +F R     +E+ +LRG+++ +++
Sbjct: 180 -ELELFYEHLEKVMTNTDFINKAHPGQVM-NKMRRMFNRTRPETQELRILRGVLTAVER 236


>gi|289583255|ref|YP_003481721.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
           43099]
 gi|289532808|gb|ADD07159.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
           43099]
          Length = 263

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRV 73
           P + +VD Q   N+G ++RAM NF  + L L++P +  P  +A   + +A D V+ +   
Sbjct: 24  PAVAVVDAQFPGNVGTISRAMKNFGFSNLLLIDPPELDPDGEAYGFAGHARDDVLPNATE 83

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132
            S   E ++D H I  T   N N+   +  P      L ER+ + +    ++FGRER GL
Sbjct: 84  IS-FDELVSDYHTIGCTAVTNENDRSHMRFPFSTPADLAERLPTVEAPTALVFGRERVGL 142

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGE 191
           TNEE+A  + I + P +  +P LN+ QA  + ++E    ++   E  + + +   A +  
Sbjct: 143 TNEELAHIDEICAIPASEEYPVLNLGQAATITLYELRSLALDKDETQLPDLERVRADEAT 202

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +    D     LEE  +  P EK++K +  L  ++ R +L   E     G++
Sbjct: 203 VDRLYDQWADLLEEINH--PPEKREKTMRMLRRVYGRADLTEREANTFLGLL 252


>gi|90406922|ref|ZP_01215113.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
           sp. CNPT3]
 gi|90311964|gb|EAS40058.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
           sp. CNPT3]
          Length = 248

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 19/249 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73
           IIL+      NIG  ARAM    L+ L LV P    DG    K+ + SA A  V+ + + 
Sbjct: 7   IILIGTSHPGNIGSAARAMKTMGLSNLVLVAPECEVDG----KSIALSAGASDVLKNHQR 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWG 131
           F+ L+EAIAD   +   +AR R     +L P+E      + +  G    V I+FGRE  G
Sbjct: 63  FATLEEAIADCGLVIGASARPRTLDWPMLDPREMG---EKAVIEGAKYPVAIVFGRENSG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTN+E+   +  +  P NP + SLN++ AV  + +E   + + S  K   E+  P ++ E
Sbjct: 120 LTNDELHKCHFHVFIPANPEYSSLNLAMAVQTLSYEIRMSFLASHAKVELEEEYPLSE-E 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF--IRPELMREEVFLLRGIVSTLDKF 249
           L    ++L+ +LE+  +  P      M   L   F   RPE++  E+ + RG+ S++ K 
Sbjct: 179 LEGMFNHLQETLEDTRFIVPAHPGLVM-TKLRRFFNRARPEVV--ELRMWRGVFSSIQK- 234

Query: 250 SRQSSRRNN 258
           S  S+R+ +
Sbjct: 235 SLISARKED 243


>gi|300710881|ref|YP_003736695.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
 gi|299124564|gb|ADJ14903.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
          Length = 238

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 14/242 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP----RDGWPSEKARSSSANADCVIDSVR 72
           +++VD +   N+G +ARAM NF  + L+LV+P    RDG       +  A  D + D+  
Sbjct: 4   VVIVDAETPGNVGTIARAMKNFGFSDLKLVDPPELDRDG--EAYGFAGQAREDVLPDAEV 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWG 131
           V     E I   H +  T   N +  K V  P      L   + S + +V ++FGRER G
Sbjct: 62  V--TFDEVIEGFHTVGFTATTNEDARKHVRFPFRTPTDLAADLASVETDVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKG 190
           L NEE+A  + I + P +  +P LN+ QA  + ++E  + ++  S+  +V+ +   A + 
Sbjct: 120 LMNEELARLDQICAIPASADYPVLNLGQAATVALYELRDLAMNESQLPDVEHER--AAEP 177

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+  F D  + +L+  GY  P  K+ K +  +  +  R      E+  L G++  +++ +
Sbjct: 178 EIERFYDRFDETLQAVGY--PDRKRPKTMRLVRRLVGRSHPTDREITTLHGVLRAVERAT 235

Query: 251 RQ 252
           R+
Sbjct: 236 RE 237


>gi|33865253|ref|NP_896812.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632422|emb|CAE07234.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
          Length = 238

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 5/231 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV+P    NIG VAR   NF +  LRLVNPR     + A   + +A  ++    +  
Sbjct: 4   VVVLVEPAGPLNIGSVARLCANFGVDALRLVNPRCEVLCDDALRMAVHATPLLRQATIHP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L+ AI D   + AT  R  +    +  P  A   +N  +       ++FGRE  GLTN+
Sbjct: 64  DLEAAIGDCSRVIATCGRLDHGGIPLQTPDTA---INWLLAGDPPHALVFGREDRGLTND 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L   +++      +PSLN+S AV +++ +   + + +     K+  +PA   +L   
Sbjct: 121 ELRLCQRVLTLHSQAAYPSLNLSHAVAVVLHDLARHQLQARAPQAKDP-SPAPAADLTGL 179

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           LD     L E G+  P  +  +M   +  +  R     EEV L RG+V  L
Sbjct: 180 LDDAAELLLEAGFLLPHTRAARM-GKVRDLLQRATCRAEEVALFRGMVRQL 229


>gi|254225011|ref|ZP_04918625.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125622398|gb|EAZ50718.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 244

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 131/240 (54%), Gaps = 17/240 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S  N   V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECG----EKLISEANQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190
           NEE+ L +  +  P NP + SLN++ AV L+ +E     +    SS+ +  ++  P  + 
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI--RPELMREEVFLLRGIVSTLDK 248
           EL  F  +LE  + +   F   ++  ++++ L  +F   RPE   +E+ +LRGI++++ K
Sbjct: 182 ELERFYAHLEQVIMQTE-FISAQQPGQVMNKLRRMFTHARPEA--QEINILRGILTSVQK 238


>gi|153835375|ref|ZP_01988042.1| LasT protein [Vibrio harveyi HY01]
 gi|156973366|ref|YP_001444273.1| rRNA methylase [Vibrio harveyi ATCC BAA-1116]
 gi|148868097|gb|EDL67263.1| LasT protein [Vibrio harveyi HY01]
 gi|156524960|gb|ABU70046.1| hypothetical protein VIBHAR_01053 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 120/236 (50%), Gaps = 9/236 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL LV+P+     ++  + +A A  +  +  V S 
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQ-CEVDDQTLALAAGAGDIAQNATVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L+EAI D   +  ++AR+R     +L P+E      +    GQ   V ++FGRER GLTN
Sbjct: 66  LEEAIEDCGLVVGSSARSRTLEWPMLEPRECG---EKFAVEGQKHPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGEL 192
           +E+   +  +  P NP + SLN++ AV  + +E      ++  S+    E        EL
Sbjct: 123 DELQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAPSEPEEYPRHKEL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             F ++LE  + +  +    E+  ++++ L  ++ R     +E+ +LRG+++ ++K
Sbjct: 183 EMFFEHLEKVMIDTQFINK-EQPGQVMNKLRRLYSRARPEAQELNILRGVLTAIEK 237


>gi|289677967|ref|ZP_06498857.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 155

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 1/150 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  +V + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRI-FPSPDADARASGATDILEGAQVVAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE
Sbjct: 66  LEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +   +  +  P +P F SLN++ AV ++ +
Sbjct: 126 LQRCHFHVHIPSDPAFSSLNLAAAVQVLSY 155


>gi|121593461|ref|YP_985357.1| RNA methyltransferase [Acidovorax sp. JS42]
 gi|120605541|gb|ABM41281.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax sp. JS42]
          Length = 264

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 111/255 (43%), Gaps = 28/255 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
            IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+   R
Sbjct: 5   FILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHAR 62

Query: 73  VFSNLKEAIADLHFIYATTARNR-----------------NNFKSVLAPKEAAIVLNERI 115
           + + L EA+  +  + AT    R                 NN  S L  K     L    
Sbjct: 63  IVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARNP 122

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V  +FG ER+G+ NE++   +  +S P NP F SLN+  AV ++ +E  +     
Sbjct: 123 SPETGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALATR 182

Query: 176 SEKNVKEQNTP----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
            E    +++ P    A   ++   L + E +L   G+  P    KK++  L  +F R +L
Sbjct: 183 GEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQL 241

Query: 232 MREEVFLLRGIVSTL 246
            +EE+ +LRG+  ++
Sbjct: 242 TQEEIHILRGVAKSM 256


>gi|303244844|ref|ZP_07331172.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
           okinawensis IH1]
 gi|302484794|gb|EFL47730.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
           okinawensis IH1]
          Length = 231

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 94/161 (58%), Gaps = 7/161 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++ILV+P+   N+G +AR M NF + +LR+V  +D    E A   + +A  ++++ + + 
Sbjct: 4   IVILVNPKYSGNVGAIARNMMNFGVNELRIVGSKDILNDE-AYIRAVHAKEILNNAKFYD 62

Query: 76  NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           NL +A  D+ FI  T+     +RN  +  + P E A     +I  G  +GI+FGRE  GL
Sbjct: 63  NLNDATQDIDFIVGTSGAVSGDRNLKRVPITPHELA--EKYKIVDGT-MGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +N+E+ L +  +S P +  +P +N+S AV ++++E   +S+
Sbjct: 120 SNKELELCDLFVSIPTSEKYPIMNLSHAVSIILYELYVSSL 160


>gi|33592943|ref|NP_880587.1| methyltransferase [Bordetella pertussis Tohama I]
 gi|33572591|emb|CAE42183.1| probable methyltransferase [Bordetella pertussis Tohama I]
 gi|332382355|gb|AEE67202.1| methyltransferase [Bordetella pertussis CS]
          Length = 258

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 14/242 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I+  P    N+G  ARA+      +L LV PR  D     +A + ++ A  V++   V  
Sbjct: 11  IMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHD 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133
            L+EA+A +   +A T R R+        +EAA +    +   +   V I+ G ER GLT
Sbjct: 71  TLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQN 184
           N +I L + I   P NP + SLN++QA+ L  WE     +          SS +      
Sbjct: 131 NAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSLLPASSAQQANPGA 190

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA    + + L + E +L   G+  P    KK++  +  +  R  L R+EV +LRG+ +
Sbjct: 191 APADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSALSRDEVDMLRGVCT 249

Query: 245 TL 246
            +
Sbjct: 250 AM 251


>gi|227080925|ref|YP_002809476.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|298499121|ref|ZP_07008928.1| RNA methyltransferase [Vibrio cholerae MAK 757]
 gi|227008813|gb|ACP05025.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|297543454|gb|EFH79504.1| RNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 244

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 129/238 (54%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNA-QIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P+E      E++ S     +V ++FGRER GLT
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPREC----GEKLISEAKQHSVAMVFGRERTGLT 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPATKG 190
           N+E+ L +  +  P NP + SLN++ AV L+ +E     +    SS+ +  ++  P  + 
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQ- 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 182 ELERFYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|257138672|ref|ZP_05586934.1| RNA methyltransferase [Burkholderia thailandensis E264]
          Length = 306

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 36  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVVP 95

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++  +FG ER GL+NE
Sbjct: 96  TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIAFVFGNERTGLSNE 154

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E            A   E+
Sbjct: 155 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSDEI 214

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI   +
Sbjct: 215 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 267


>gi|59711222|ref|YP_203998.1| methyltransferase [Vibrio fischeri ES114]
 gi|59479323|gb|AAW85110.1| predicted methyltransferase [Vibrio fischeri ES114]
          Length = 241

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 16/239 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADCVIDSVRV 73
           I+LV      NIG  ARAM    LT + LV P    DG    +A + +A A  + ++ RV
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEVDG----QAIALAAGASDIANNARV 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EAI+D   +  ++AR+R     +L P+EA I   E   +   +  +FGRER GLT
Sbjct: 63  VDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPT-HPIAFVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATK 189
           NEE+   +  +  P NP + SLN++ AV  + +E     +++     E   KE + P   
Sbjct: 122 NEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGES--KEVDYPLNH 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            EL  F ++LE  +    +       + M + +  +F R     +E+ +LRG+++ +++
Sbjct: 180 -ELELFYEHLEKVMTNTDFINKAHPGQVM-NKMRRMFNRTRPETQELRILRGVLTAVER 236


>gi|167581379|ref|ZP_02374253.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis TXDOH]
          Length = 306

 Score = 92.4 bits (228), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 11/236 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP----SEKARSSSANADCVIDSVRV 73
           +LV+P    N+G  ARA+     ++L LV PR   P      +A + ++ AD V+ S  V
Sbjct: 36  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPR--VPRVQSDPEALAMASGADDVLASAHV 93

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++  +FG ER GL+
Sbjct: 94  VPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIAFVFGNERTGLS 152

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKG 190
           NE +   +AI   P NP + SLN++QAV ++ +E     +   E            A   
Sbjct: 153 NEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSD 212

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           E+     +LE +L    +  P    KK++  L  +F R  L REEV ++RGI   +
Sbjct: 213 EIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 267


>gi|302835032|ref|XP_002949078.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f.
           nagariensis]
 gi|300265823|gb|EFJ50013.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f.
           nagariensis]
          Length = 393

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 65/92 (70%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P IILV+P++GENIG  ARAM NF L+ LRLV P DGWP+  A + +++A  ++ S R++
Sbjct: 7   PSIILVEPKMGENIGAAARAMKNFGLSDLRLVKPHDGWPNTLADAVASHAVDLLRSARLY 66

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
            ++++AIADL  +YA TAR R   K+ +  ++
Sbjct: 67  DSVEDAIADLDRVYAATARTRYMTKAFVTSRQ 98



 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 27/162 (16%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            G++FGRE  GLTNEE+A +N ++    +P +P LN++QAVL  V+E     + +     
Sbjct: 228 AGVLFGREASGLTNEEVAAANKVLCIEAHPDYPVLNLAQAVLCTVYELYNARLDAVAGAS 287

Query: 181 KEQNTP--------------------------ATKGELLSFLDYLEISLEERGYFRPVEK 214
             +                             A+ GE+ +FL  L   L++  +F    K
Sbjct: 288 SVEAAAAAGGGGAVAVGSNAEELRARAAAVQLASHGEVENFLRRLVSELDDVNFFESASK 347

Query: 215 KKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDKFSRQSSR 255
           +   +  + ++  + E L   EV LL GI+S L   +R  +R
Sbjct: 348 RPATMLSIRNLVAKAEGLTASEVALLHGILSKLTTAARARAR 389


>gi|225872216|ref|YP_002753671.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
           51196]
 gi|225793787|gb|ACO33877.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
           51196]
          Length = 240

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 120/238 (50%), Gaps = 19/238 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFS 75
           ++LV  +   NIG  ARAM NF    LR+V P D  W  ++ARS+   A  ++ S R  S
Sbjct: 12  VVLVRTRNPLNIGAAARAMINFGFHDLRVVEPFDLAW--QEARSAVGAAS-ILASARECS 68

Query: 76  NLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            L +A+AD   +  T+A  +R   + ++    A   L +R+     + ++FG+E+ GLTN
Sbjct: 69  TLADAVADCTCVLGTSAIGDRQPLQPIVDLPAALPWLAQRV--AGRIALVFGQEKHGLTN 126

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            +++  +AI+  P  P   S+N+ QAV + ++E        +        T A K    +
Sbjct: 127 HDLSHCDAILRIPTLPEQASMNLGQAVAVCLYE-------FARSGHAPTATEAPKAAPAA 179

Query: 195 FLDYLEISLEE----RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L+ L  SL       GY +P+  +  +L+   ++  R  L RE+  LL G+++ +++
Sbjct: 180 DLERLTASLHRLLCISGYIKPIAAQGALLEA-RALIHRLTLNREDTHLLTGMLAKIER 236


>gi|83720786|ref|YP_442465.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83654611|gb|ABC38674.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis E264]
          Length = 338

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V  
Sbjct: 68  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVVP 127

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++  +FG ER GL+NE
Sbjct: 128 TLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIAFVFGNERTGLSNE 186

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGEL 192
            +   +AI   P NP + SLN++QAV ++ +E     +   E            A   E+
Sbjct: 187 HVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPPDAALGARAQSDEI 246

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
                +LE +L    +  P    KK++  L  +F R  L REEV ++RGI   +
Sbjct: 247 ERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 299


>gi|167837119|ref|ZP_02464002.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis MSMB43]
          Length = 299

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP----SEKARSSSANADCVIDSVRV 73
           +L++P    N+G  ARA+     ++L LV PR   P      +A + ++ AD V+ S  V
Sbjct: 33  VLIEPSHPGNVGAAARALKTMGFSRLVLVAPR--VPRVQSDPEALAMASGADDVLASAHV 90

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L +A+  + +    TAR+R      LAP+ AA    +++ +G ++ ++FG ER GL+
Sbjct: 91  VPTLADALNGVQWSLGLTARSREYGPPRLAPRAAAASALQQVRTG-DIALVFGNERTGLS 149

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKG 190
           NE +   +AI   P NP + SLN++QAV ++ +E     +   E          T A   
Sbjct: 150 NEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAAPPDAALGTLAQSD 209

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           E+     +LE +L    +  P    KK++  L  +F R  + REEV ++RGI 
Sbjct: 210 EIERMFVHLENALIALDFLDP-RNPKKLMSRLRRLFARTGIEREEVNIVRGIA 261


>gi|260771409|ref|ZP_05880334.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
 gi|260613535|gb|EEX38729.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
          Length = 243

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 15/239 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L Q+ LV+P+    ++    ++  +D  +++ ++   
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLKQMVLVDPQCEVDAQAIALAAGASDIALNA-QIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGL 132
           L  AIAD   +  T+AR+R     +L P+E         F+ +     V I+FGRER GL
Sbjct: 66  LDSAIADCGLVVGTSARSRTLEWPMLDPRECG-----EKFAAEGEQHPVAIVFGRERTGL 120

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATK 189
           TN+E+   +  +S P NP + SLN++ AV  + +E      N   S    + E   P   
Sbjct: 121 TNDELQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIRVAHLNRQQSQFSTMPEAAYP-RH 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            EL  F  +LE  L +  +    EK  ++++ L  +F R     +E+ +LRG+++ ++K
Sbjct: 180 NELELFYTHLEKVLVQTQFISE-EKPGQVMNKLRRLFSRARPEEQELNILRGVLTAVEK 237


>gi|86610208|ref|YP_478970.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558750|gb|ABD03707.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 276

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 22/250 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75
           ++LV P    N+G +AR M N    Q  LV+P+ D    E   ++   AD ++   R   
Sbjct: 17  LVLVQPAGPRNLGAIARVMKNMGFRQWVLVDPQCDPLDIEAITTAVHGAD-LLHQARKVQ 75

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI----IFGRERWG 131
            L EA+     ++ TT R++        P E  I    + F           +FG E  G
Sbjct: 76  TLPEALQGCVQVFGTTGRSQTY------PPEWQIQSPRQAFPALLAAGPAALVFGPEDRG 129

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPA 187
           L+NEE+AL +  I  P +  +PSLN++QAV +  +E      ++   +      ++  P 
Sbjct: 130 LSNEELALCHRQIQIPTDATYPSLNLAQAVAICCYELYTLVCQSPSPAPPMPSPQRLAPF 189

Query: 188 TKGELL-SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
              ELL  F D+LE  L + GY  P   ++KML    ++F R  L   EV LLRGI+  L
Sbjct: 190 ---ELLEGFFDHLEALLLQIGYLHPHTARRKML-KFRALFQRAGLTVAEVALLRGILRQL 245

Query: 247 DKFSRQSSRR 256
            ++S+  SR+
Sbjct: 246 -QWSQGCSRQ 254


>gi|108763165|ref|YP_630636.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467045|gb|ABF92230.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 240

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 3/231 (1%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L+ P+  EN+G  ARA+ N  L+    V P +    E AR  + +A  V+D+ R    L
Sbjct: 8   VLMRPRNAENLGAAARALKNCGLSDWVWVRP-EVEDLEPARRLAVHAGDVLDAARRADTL 66

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +EA+AD  ++  T++R     K  L P+     L  R   G  V ++FG ER GLTN E+
Sbjct: 67  EEAVADCVWVVGTSSRKVEG-KRRLPPRAVGEELVARAPQGP-VALVFGDERSGLTNAEV 124

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              + + + P  P  PS+N++QAVLL  +E     + ++          AT  EL     
Sbjct: 125 ERVHDLSAVPTAPEQPSINLAQAVLLYAYEVRVAMLEAAATPPGPLPAAATDAELAQVES 184

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            LE  L   G+    +  +  + DL++   R  L R+E  L    + +L K
Sbjct: 185 TLESVLTTGGFLVDAQPGRTAVRDLFAPLRRSRLTRKEARLWLAALHSLRK 235


>gi|254424488|ref|ZP_05038206.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7335]
 gi|196191977|gb|EDX86941.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7335]
          Length = 304

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 126/287 (43%), Gaps = 47/287 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P    N+G VAR M NF L+QL LV+P+  +   +A   + +AD V+ + ++   
Sbjct: 20  IVLVAPAGPLNVGSVARVMKNFGLSQLYLVDPQCDYLGAEALQMAVHADDVLKTAQIVPT 79

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAA---IVLNERIFSGQNVGIIFGRERWGLT 133
           + +A+A   +  ATTAR R  F   L P E A   ++ +      +   ++FG E  GL+
Sbjct: 80  IPKALAGCEYAIATTARTR-GFNVPLDPPETALPNLLTSNPQQPIRQTALLFGPEDRGLS 138

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-------MENSIVSS--------EK 178
           N+E+  +   +  P +  + +LN++QAV +  +E          NS +SS         K
Sbjct: 139 NQELIYAQQFLKIPTSDAYSALNLAQAVTICCYELSRVARTFCPNSTLSSYPIESSLENK 198

Query: 179 NVKEQNTPATKG---------------------------ELLSFLDYLEISLEERGYFRP 211
               QNTP++                             E+  + ++LE  L + GY  P
Sbjct: 199 TPALQNTPSSAKQSESSLSSTANAPIIKEHEDQPRANLEEIERYYEHLESLLLQVGYLLP 258

Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
                +M   +  +  R      EV LLRG++  ++     S +R  
Sbjct: 259 HTSASRM-RKIRQLLHRASPTSHEVALLRGMIRQIEWALSHSKQRQT 304


>gi|17232034|ref|NP_488582.1| hypothetical protein alr4542 [Nostoc sp. PCC 7120]
 gi|17133678|dbj|BAB76241.1| alr4542 [Nostoc sp. PCC 7120]
          Length = 243

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 6/235 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  I+LV+P    N+G +AR M NF L  L LV+P+    SE A   + +A  +++S   
Sbjct: 5   GVRIVLVEPSGPLNVGAIARVMKNFGLAHLVLVSPQCDPLSEDAMRMAVHAKEILESAIT 64

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L  A+       AT+ R+ +   ++  P+ A   L E   +GQ   +IFGRE  GL+
Sbjct: 65  VPTLPAALHGCVRAIATSGRDNDWGLTLETPRIALPWLLEE--TGQPSALIFGREDRGLS 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKGEL 192
           NEE+  +   I  P +P + SLN++ AV +  +E  +N      + + E    P    E 
Sbjct: 123 NEELIYAQRFIRIPTSPDYLSLNLASAVGICCYELAQNLTPPETQTISETEFAPLEFVE- 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            ++   LE  L   GY  P     +M +    ++ R  L   EV +LRGI+  ++
Sbjct: 182 -AYYQQLESLLLRIGYLYPHTATSRM-EKFRQLYNRAYLQTHEVGMLRGILRQIE 234


>gi|298674492|ref|YP_003726242.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
           evestigatum Z-7303]
 gi|298287480|gb|ADI73446.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
           evestigatum Z-7303]
          Length = 232

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 16/235 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G +AR M NF L +L LVNP       +AR+ S++A  ++++ +V + 
Sbjct: 7   IVLVEPLYQGNVGSIARVMKNFGLCELVLVNP--CKLKGEARAMSSHARDILENAKVTNT 64

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT 133
            KEA+ D   +  TT   +  + + +  P      L  R+    G+ V I+FGRE  G T
Sbjct: 65  FKEAVKDASLVVGTTGMTSSKDDEHIRNPSYTPKELKNRLEGMDGK-VAILFGREDNGFT 123

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N+E+ L + I+  P N  +P +NIS +  ++ +E   ++I S EK        A   +L 
Sbjct: 124 NDELRLCDMIVHIPANEEYPIMNISHSAAVIFYEL--SNIQSGEKPF------ADPFDLK 175

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              ++L   L++  Y  P  KK K L     +F R +L   EV  LRG++  + +
Sbjct: 176 LLHNHLNELLKQLEY--PSHKKDKTLLMFRRVFGRAQLTNREVQTLRGVLRIIQR 228


>gi|256811397|ref|YP_003128766.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           fervens AG86]
 gi|256794597|gb|ACV25266.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           fervens AG86]
          Length = 227

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 92/155 (59%), Gaps = 9/155 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   N+G +AR M NF   +LR+V  +    +E A   + +A  ++D+ + +++
Sbjct: 4   VVLVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIINNE-AYMMAVHAREILDNAKFYNS 62

Query: 77  LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132
             EAI DL F+ AT+     +RN  +  + PKE A    ++I   +  +GI+FGRE  GL
Sbjct: 63  FDEAIKDLDFVIATSGARGGDRNLKRVPITPKELA----DKILEVKGKIGIVFGREDDGL 118

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            NE+I   + ++S P +  +P +N+S AV ++++E
Sbjct: 119 RNEDIDKCDLLVSIPTSEKYPIMNLSHAVAVILYE 153


>gi|240125860|ref|ZP_04738746.1| putative methylase family protein [Neisseria gonorrhoeae SK-92-679]
 gi|268684458|ref|ZP_06151320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268624742|gb|EEZ57142.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
          Length = 271

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P L +      IIL       NIG  ARAM    L +L +V              
Sbjct: 1   MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60

Query: 47  --NPRD----GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
             NP D      P E    +S  AD V+ +  + + L EA+AD     A T+R R     
Sbjct: 61  VFNPDDVQSFALPEESFILASGAAD-VLHNAEIVATLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVSELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   L ++E  +++ G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|284165121|ref|YP_003403400.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
           turkmenica DSM 5511]
 gi|284014776|gb|ADB60727.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
           turkmenica DSM 5511]
          Length = 255

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A +  +    P + +VD Q   N+G +ARAM NF    L LV+P +  P  +A   + 
Sbjct: 5   PSATEPPSDRTPPAVAVVDAQFPGNVGTIARAMKNFGFEDLLLVDPPELDPDGEAYGFAG 64

Query: 63  NA--DCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +A  D + ++  + F  L   + + H I  T   N ++   V  P      L ER+ + +
Sbjct: 65  HAREDVLPNATEISFDRL---VTEYHTIGCTAVTNEDDRSHVRFPFSTPADLAERLPTVE 121

Query: 120 N-VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
               ++FGRER GLTNEE+A  + I S P +  +P LN+ QA  + ++E    ++   E 
Sbjct: 122 APTALVFGRERVGLTNEELARIDEICSIPASDEYPVLNLGQAATITLYELRSLTLADDET 181

Query: 179 NVKE-QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
            + + +   A +  +    D     L E  +  P EK+ K +  L  +F R +L   E  
Sbjct: 182 QLPDVERVRAPEPTVDRLYDQWADLLAEINH--PEEKRDKTMRMLRRVFGRADLTEREAN 239

Query: 238 LLRGIV 243
            L GI+
Sbjct: 240 TLLGIL 245


>gi|261363634|ref|ZP_05976517.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
           25996]
 gi|288568164|gb|EFC89724.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
           25996]
          Length = 271

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 129/266 (48%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P+L +      IIL       NIG  ARAM    L +L +V              
Sbjct: 1   MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTEQPP 60

Query: 47  -----NPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                NP+D   P E    +S  AD + ++V + + L EA+AD     A T+R R     
Sbjct: 61  VFNPENPQDFQLPEESFILASGAADVLHNAV-IAATLDEALADTTLACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P+E    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRELVPELLQAAQRGEQVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    + +    ++++++  AT  ++   + ++E  +++ G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQTDMPM-THLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|255065931|ref|ZP_05317786.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
           29256]
 gi|255049842|gb|EET45306.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
           29256]
          Length = 271

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 129/266 (48%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P+L +      IIL       NIG  ARAM    L +L +V              
Sbjct: 1   MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTGQPP 60

Query: 47  -----NPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                NP+D   P E    +S  AD + ++V + + L EA+AD     A T+R R     
Sbjct: 61  VFNPENPQDFQLPEESFILASGAADVLHNAV-IAATLDEALADTTLACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P+E    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRELVPELLQAAQRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    + +    ++++++  AT  ++   + ++E  +++ G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQTDMPM-THLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|303248777|ref|ZP_07335029.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           fructosovorans JJ]
 gi|302489864|gb|EFL49793.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           fructosovorans JJ]
          Length = 274

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 12/233 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75
           I+L  P+  EN+G  ARA  N  +++L LV P   +  ++AR  +++    +++ +  + 
Sbjct: 31  IVLFRPKFSENVGAAARACANMGVSRLLLVEP-SAFDLDRARPMATSKGGLLLEKLEFYP 89

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+A    ++ TTAR       ++ P++AA      + +G  V ++FG E  GL+N 
Sbjct: 90  TLAEAVAGAELVFGTTARLGGWRTGIITPEQAAASACPTLAAGGKVAVVFGPEDAGLSNH 149

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-----TKG 190
           E  L   +++ P +    SLN++QAVL+M +E  +    ++  +V E   P      T  
Sbjct: 150 ETQLCGRLVNIPTSDAATSLNLAQAVLVMCYEMFK----AATGHVGEPAGPTPARTVTHA 205

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           E  +    L  +L    + +P      ML  +     R  L R+E  LL G+ 
Sbjct: 206 EREALFAALRRTLLSIDFIKPDNPDYWML-PVRRFIDRVGLKRQEYSLLMGVC 257


>gi|59801097|ref|YP_207809.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
 gi|194098799|ref|YP_002001862.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
 gi|239999090|ref|ZP_04719014.1| putative methylase family protein [Neisseria gonorrhoeae 35/02]
 gi|240014003|ref|ZP_04720916.1| putative methylase family protein [Neisseria gonorrhoeae DGI18]
 gi|240016444|ref|ZP_04722984.1| putative methylase family protein [Neisseria gonorrhoeae FA6140]
 gi|240080563|ref|ZP_04725106.1| putative methylase family protein [Neisseria gonorrhoeae FA19]
 gi|240115823|ref|ZP_04729885.1| putative methylase family protein [Neisseria gonorrhoeae PID18]
 gi|240118121|ref|ZP_04732183.1| putative methylase family protein [Neisseria gonorrhoeae PID1]
 gi|240121569|ref|ZP_04734531.1| putative methylase family protein [Neisseria gonorrhoeae PID24-1]
 gi|240123670|ref|ZP_04736626.1| putative methylase family protein [Neisseria gonorrhoeae PID332]
 gi|254493868|ref|ZP_05107039.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260440361|ref|ZP_05794177.1| putative methylase family protein [Neisseria gonorrhoeae DGI2]
 gi|268594928|ref|ZP_06129095.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268596693|ref|ZP_06130860.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268601499|ref|ZP_06135666.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268603837|ref|ZP_06138004.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682301|ref|ZP_06149163.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|291043656|ref|ZP_06569372.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398959|ref|ZP_06643124.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717992|gb|AAW89397.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
 gi|193934089|gb|ACF29913.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512908|gb|EEH62253.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548317|gb|EEZ43735.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268550481|gb|EEZ45500.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268585630|gb|EEZ50306.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268587968|gb|EEZ52644.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622585|gb|EEZ54985.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|291012119|gb|EFE04108.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291610373|gb|EFF39483.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164381|gb|ADV07922.1| putative methylase family protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 271

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P L +      IIL       NIG  ARAM    L +L +V              
Sbjct: 1   MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60

Query: 47  --NPRD----GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
             NP D      P E    +S  AD V+ +  + + L EA+AD     A T+R R     
Sbjct: 61  VFNPDDVQSFALPEESFILASGAAD-VLHNAEIVATLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   L ++E  +++ G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|238021057|ref|ZP_04601483.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
 gi|237868037|gb|EEP69043.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
          Length = 266

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 120/241 (49%), Gaps = 21/241 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPR-------------------DGWPSEKARSSSANADCV 67
           NIG  ARAM    LT+L LV P                    D    E++   S+ A  V
Sbjct: 23  NIGAAARAMKTMGLTRLTLVAPNIMATPMTPEPPAFIAEQAADFRLPEESFVLSSGARDV 82

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++  ++ + L EA+A      A T+R R     +  P++ A  L      GQ + ++FG 
Sbjct: 83  LERAKIVATLPEALAGTTLSCALTSRRRELTTPLQTPRQLAPSLLAAAQVGQQIALVFGN 142

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E +GL+ +E+   N +++   NP + SLN++QAV ++ +E   +  +     + E+N  A
Sbjct: 143 ETYGLSIDEVQQCNRLMTISGNPDYFSLNLAQAVQVVCYELFSHVNMDMSHLIPERNL-A 201

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  ++   + +LE ++ +  +FR    +++M+  L+S+F R +   E++ +LRG ++ + 
Sbjct: 202 TAEQVAGMVQHLEDTMVQLDFFR-RRNQERMMRRLHSLFNRADTTTEDIDILRGFLNRVQ 260

Query: 248 K 248
           +
Sbjct: 261 Q 261


>gi|310820269|ref|YP_003952627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
 gi|309393341|gb|ADO70800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +L+ P+  EN+G  ARAM N  L++   V P   D  P   AR  + +A+ ++D VR   
Sbjct: 8   VLMRPRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP---ARRLAVHAEELLDGVRRED 64

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L+ A+AD  ++  T++R     + +L P+     L  R   G  V I+FG ER GLTN 
Sbjct: 65  SLEAAVADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARAAQGP-VAIVFGDERSGLTNA 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+   + + + P +P  PS+N++QAVLL  +E    S+ ++          A+  EL   
Sbjct: 123 EVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELARV 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            + LE  L+  G+       +  L D+++   R  L   E  L    + TL K
Sbjct: 183 EETLETLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRK 235


>gi|315180990|gb|ADT87904.1| RNA methyltransferase, TrmH family [Vibrio furnissii NCTC 11218]
          Length = 243

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 119/241 (49%), Gaps = 19/241 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM      Q+ LV+P+    ++    ++  +D  +++ ++   
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGFKQMVLVDPQCEVDAQAIALAAGASDIALNA-QIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L  AIAD   +  T+AR+R     +L P+E      +    G+   V I+FGRER GLTN
Sbjct: 66  LDSAIADCGLVVGTSARSRTLEWPMLDPRECG---EKFAVEGEQHPVAIVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT------ 188
           +E+   +  +S P NP + SLN++ AV  + +E     I  +  N ++   P        
Sbjct: 123 DELQKCHYHVSIPANPEYSSLNLAMAVQTLCYE-----IRVAHLNRQQSQFPTMSEAAYP 177

Query: 189 -KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              EL  F  +LE  L +  +    EK  ++++ L  +F R     +E+ +LRG+++ ++
Sbjct: 178 RHNELELFYTHLEKVLVQTQFISE-EKPGQVMNKLRRLFSRARPEEQELNILRGVLTAIE 236

Query: 248 K 248
           K
Sbjct: 237 K 237


>gi|148239933|ref|YP_001225320.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147848472|emb|CAK24023.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 229

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 28  IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI 87
           +G VAR   NF +  LRLV PR      +A   + +   V+     F+ L EA++D   +
Sbjct: 1   MGSVARLCANFGINDLRLVAPRCNPNDAQALRMAVHGQTVLHQASTFTTLLEALSDCQRV 60

Query: 88  YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP 147
            A+  R  +    +    +    + E + SG  V ++FGRE  GL+NEE+ LS+ ++   
Sbjct: 61  VASCGRIDHGDIPLQTTDQVMPWVGEGLKSGAQVALVFGREDRGLSNEELLLSHRVVRLH 120

Query: 148 VNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205
               +PSLN+S AV +++ +   + I   + ++   + +  A   +L + L   E  L +
Sbjct: 121 TVDHYPSLNLSHAVAIVLHDLQRSRIGAAADDQQALQASEAAAPPQLEACLRDAEALLLD 180

Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            G+  P   K +M   +  +  R  +  +E+ +LRG+V  L
Sbjct: 181 VGFLLPHTAKARMA-KIKGLLRRASIQAQELAMLRGMVRQL 220


>gi|21227939|ref|NP_633861.1| RNA methylase [Methanosarcina mazei Go1]
 gi|20906361|gb|AAM31533.1| RNA methylase [Methanosarcina mazei Go1]
          Length = 259

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 126/253 (49%), Gaps = 20/253 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G VARAM NF  + L L+NP +     +AR+ S++A  V++  R+ S 
Sbjct: 14  VVLVEPMYQGNVGSVARAMKNFGYSDLVLMNPCE--LEGQARAMSSHARDVLEGARIVST 71

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT 133
           L+EA+     +  TT   +    + +  P      + E++   SG  + ++FGRE  G +
Sbjct: 72  LEEAVKGADLLIGTTGVSSLKTGEHIRLPLYTVKEVREKLKGCSG-TIALLFGREDNGFS 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N+E+   + +++ P + ++P +N+S AV ++++E            ++  + P   G  L
Sbjct: 131 NDELKGFDMLVTVPTSEIYPIMNLSHAVAIVLYEL---------SGLEGGSNPLADGFDL 181

Query: 194 SFL-DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             L  +L+  LEE  Y  P  KK K    L  I  R  L   EV  LRGI+   ++  R 
Sbjct: 182 QLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRKSERKMRL 239

Query: 253 SSRRNNVLLQKTE 265
           +S      LQK E
Sbjct: 240 ASGVET--LQKIE 250


>gi|240113067|ref|ZP_04727557.1| putative methylase family protein [Neisseria gonorrhoeae MS11]
 gi|240128370|ref|ZP_04741031.1| putative methylase family protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268599153|ref|ZP_06133320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268686768|ref|ZP_06153630.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268583284|gb|EEZ47960.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268627052|gb|EEZ59452.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 271

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 126/266 (47%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P L +      IIL       NIG  ARAM    L +L +V              
Sbjct: 1   MTALKPALPDYLGNIRIILTRTGHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60

Query: 47  --NPRD----GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
             NP D      P E    +S  AD V+ +  + + L EA+AD     A T+R R     
Sbjct: 61  VFNPDDVQSFALPEESFILASGAAD-VLHNAEIVATLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   L ++E  +++ G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|15920666|ref|NP_376335.1| hypothetical protein ST0454 [Sulfolobus tokodaii str. 7]
 gi|15621449|dbj|BAB65444.1| 227aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 227

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 19/184 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++V+P+   N+G ++R   NF + +L +VNP      E+A+  SA     ++  ++ +N
Sbjct: 4   LVIVEPEGSYNLGFISRLAKNFLVDELYIVNPH--CDLEEAKKFSAKGLEYLEKAKIVNN 61

Query: 77  LKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             EAI D+    AT++      +  +  + P E       RI  G+ V +IFGRE  GLT
Sbjct: 62  FDEAIKDVELKIATSSIADIKGDILRKSIRPWELP-----RIIEGKKVALIFGRESVGLT 116

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            EEIA S+ ++  P NP +P LN+S AV ++++E  ++         + +N P   GE +
Sbjct: 117 REEIAKSDLLLFIPGNPEYPVLNLSHAVGIVLYEIWKS---------RGENKPVISGEAI 167

Query: 194 SFLD 197
           S +D
Sbjct: 168 SLID 171


>gi|213021906|ref|ZP_03336353.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 217

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 9/199 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E       + TP     +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYFR 210
           L  F  +LE +L   G+ R
Sbjct: 183 LERFYGHLEQTLLSTGFIR 201


>gi|71065736|ref|YP_264463.1| rRNA methyltransferase SpoU family protein [Psychrobacter arcticus
           273-4]
 gi|71038721|gb|AAZ19029.1| possible rRNA methyltransferase SpoU family protein [Psychrobacter
           arcticus 273-4]
          Length = 298

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 13/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++V+  L  NIG  ARAM    L++L +V P+    +     ++  +D ++ S  +   
Sbjct: 29  VVMVNTTLPANIGSAARAMHTMGLSRLTVVEPKLPIDATSVSHAAGGSD-LLSSAIIAPT 87

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL----------NER--IFSGQNVGII 124
           L+ AIAD   ++A ++R+R+  + V+ P +AA ++          NER  + +  N+ I+
Sbjct: 88  LEAAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSAINERNDVNTAPNIAIL 147

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           FGRE  GLTNEE+A ++  I    NP +P LN++ AV
Sbjct: 148 FGREDRGLTNEELAYADYHIQIDANPAYPVLNVASAV 184


>gi|171463671|ref|YP_001797784.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193209|gb|ACB44170.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 250

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 10/237 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD---GWPSEKARSSSANADCVIDSVRVF 74
           +LV+     N+G  ARA+     + LRL++P+    G   E    +S  AD +  SV   
Sbjct: 12  VLVETSHPGNVGSAARALKTMGFSDLRLISPKIKDIGSSPEAIAFASGAADILEKSVESG 71

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S L   +     +   T+R+R      +  + A  ++   +     V ++FG ER GL N
Sbjct: 72  S-LASTVKGCSLVMGLTSRDREFGPPAMDWESARSLIASTVQRQGKVALLFGPERTGLDN 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-----VSSEKNVKEQNTPATK 189
           E +AL    +    NP +PSLN++QA+++  +   E+ I      +S  N +E    A  
Sbjct: 131 EHLALCTHRVWLDANPNYPSLNLAQALMICAYTLRESLIRDPGASNSLANREEMADFADP 190

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             + + L++    LE  GY  P    KK++  + ++F R  L +EE+ LLRGI   +
Sbjct: 191 AAVAAMLEHWREGLEAIGYLDPA-NPKKLMPRIQALFARSHLHKEEIDLLRGIAKQM 246


>gi|226356726|ref|YP_002786466.1| tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
 gi|226318716|gb|ACO46712.1| putative tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
          Length = 252

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 9/203 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV P+   N+G  ARAM N   + LR+V PR  +   +A + + +A  ++ S RVF 
Sbjct: 4   AVVLVSPKTPGNVGAAARAMLNMGASDLRIVAPRCDYLDSQALAMAVHAGDLLRSARVFP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L+EA+ D      T+AR R +     AP+  A++    +       ++FG E  GL N 
Sbjct: 64  TLREALGDRDLSVGTSARLRADLP---APRHPALI-RPMVRQAAAPALVFGPEETGLINS 119

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++      +  P    + SLN+SQAVLL+ +E ++      ++ +      AT+ E+ + 
Sbjct: 120 DLEQCQVTVRIPTGN-YASLNLSQAVLLVCYEFLQG----QDEPIPVTRKTATREEMEAM 174

Query: 196 LDYLEISLEERGYFRPVEKKKKM 218
             +L  +++  GY   V  +  +
Sbjct: 175 YSHLHETMQLIGYTDAVRARHTL 197


>gi|322369305|ref|ZP_08043870.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
           DX253]
 gi|320551037|gb|EFW92686.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
           DX253]
          Length = 249

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 16/236 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEK-ARSSSANADCVIDSVR 72
           P + +V+P+   NIG +ARAM NF +  L+LVNP + G  SE    +  A  D + +   
Sbjct: 3   PAVAIVEPKTPGNIGTIARAMKNFGMDDLKLVNPPEFGRDSEAYGFAGQAREDVLPNYDE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----IIFGRE 128
           V     E I + H +  T   N +    V  P +    L E +   Q+V     +IFGRE
Sbjct: 63  V--TFDELIENYHTVGMTATTNEDASHHVRFPFKTPRELAESL---QDVTTDTVLIFGRE 117

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPA 187
             GLTNEE++  + + S P +  +P+LN+ QA  + ++E    ++  ++  +V  +   A
Sbjct: 118 ANGLTNEELSRIDEVCSIPASASYPALNLGQAATVTLYELRTLTVEETQLPDVSRER--A 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
            + E+  F       LE  G  +P EK +K +  +  +F R      E+  LRGIV
Sbjct: 176 DEAEIEGFYGAFSDLLETVG--QPTEKHEKNMRMIRRVFGRAHPTGREIATLRGIV 229


>gi|51892745|ref|YP_075436.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
           14863]
 gi|51856434|dbj|BAD40592.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
           14863]
          Length = 257

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L  PQ   N+  + R M NF L+ LRLV P    P   A   + + + +I   R F 
Sbjct: 12  ALVLYQPQDVVNVAAIIRVMSNFGLSDLRLVEPAAFDPHRIA-GIAHHTEPLIARTRRFP 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L+ A+AD      TT R R   + VL P+ AA ++ ++  + Q V I+FG ER GL N 
Sbjct: 71  TLEAALADCGLTLGTTGRPRETERQVLPPRAAAPMILDQART-QRVAILFGPERDGLPNA 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            + L + +I+ P +P   SLN++QA L++ +E
Sbjct: 130 ALDLCHGVITIPTHPFNRSLNLAQAALVIAYE 161


>gi|220906581|ref|YP_002481892.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219863192|gb|ACL43531.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7425]
          Length = 262

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 109/237 (45%), Gaps = 17/237 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    NIG ++R + N  L QL LVNP       +AR  + +A  ++   R    
Sbjct: 17  IVLVEPAGPLNIGAISRVLKNMGLRQLILVNPLCDPLGTEARQMAVHAVDLLQQARQVQT 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+     I ATT R +        P+     L      G    +IFGRE  GLTN E
Sbjct: 77  LPQALEGCERIMATTMREQVGEVVTELPRTGLPWL-----LGHPAALIFGREDRGLTNTE 131

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF- 195
           +  +  +I  P +P++PSLN++QAV +  +E  +     + + + E   P   GEL  F 
Sbjct: 132 LNYAQRLIRIPTDPIYPSLNLAQAVAVCSYELYQQ----ASQALVEPIAPG-GGELARFE 186

Query: 196 -----LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
                   LE  L + GY        +M      +F R +    EV LLRGI+S ++
Sbjct: 187 NLEAYYQQLETVLLKIGYLYSHTAVSRM-AKFRRLFNRSQPTEAEVALLRGILSQVE 242


>gi|168702027|ref|ZP_02734304.1| RNA methyltransferase, TrmH family, group 1 [Gemmata obscuriglobus
           UQM 2246]
          Length = 269

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 8/249 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P    N+G  AR M NF L+ L LV P        AR  + +   V+D+ RV  +
Sbjct: 10  VVLVRPHYAGNLGATARVMRNFGLSDLVLVAPYASTGDLDARRMATHGLAVLDAARVVPD 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L +A++D  F  AT++     F+S      AA  + E + + +   V ++FG E  GL+N
Sbjct: 70  LGDALSDCVFSLATSSLTAGVFRSGTI-GTAAEQMPELLAAAEAGPVAVVFGPEPHGLSN 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEKNVKE--QNTPATKG 190
           EEI   + +++ P +P   SLN++QAV +  +E  +  +  ++  +   E  +   A   
Sbjct: 129 EEIGRCHGLVNVPSDPASGSLNLAQAVAICCYEFRKAWSKRLNDARGKPEIPERAVAPFA 188

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +     ++L  +L E GY    EK   ++  +  +  R     +EV +L G+   L   S
Sbjct: 189 DQDRMFEHLRHALTEVGYLFG-EKGDSLMHAIRQLVGRAMPTPQEVKILHGLARQLLWAS 247

Query: 251 RQSSRRNNV 259
           RQ  R  + 
Sbjct: 248 RQMKRDGDT 256


>gi|319794743|ref|YP_004156383.1| RNA methyltransferase, trmh family, group 1 [Variovorax paradoxus
           EPS]
 gi|315597206|gb|ADU38272.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           EPS]
          Length = 247

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 14/236 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73
           IL+      N+G  ARAM       L LV PR  W +    E+    ++ A  V+ + R+
Sbjct: 6   ILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLTNARI 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+  +  + AT    R+       P+E    L +     Q+V  +FG ER+G+ 
Sbjct: 64  VETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKE-GDAQHVAFLFGSERFGMR 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NE++   N  +S P +P F SLN+  A+ ++ +E     +      V++   P    +  
Sbjct: 123 NEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEW---RLALGGYEVRDATAPVQAADAQ 179

Query: 194 S---FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           S    LD+ E SL + G+  P    KK++  L  +F R +   EE+ +LRGI   +
Sbjct: 180 SVAGMLDHWERSLVDIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAM 234


>gi|91789152|ref|YP_550104.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91698377|gb|ABE45206.1| RNA methyltransferase TrmH, group 1 [Polaromonas sp. JS666]
          Length = 268

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 121/250 (48%), Gaps = 16/250 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
            +L++     N+G  ARAM       L LV PR  W +    E+    ++ A  V+ + R
Sbjct: 5   FVLINTSHAGNVGAAARAMKVMGFDDLVLVAPR--WANVLNREETIQRASGALDVLKNAR 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGI------- 123
           + + L EA+  +  + AT    R+      AP+E  + ++ N+   S +N G+       
Sbjct: 63  IVATLDEALDGMSHLCATAMTPRDFGPPTRAPREHFSKLLSNDEPSSPENKGLQPDSVAF 122

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FG ER+G+ N+++   +  +S P +P F SLN+  AV L+ ++  +     + +    +
Sbjct: 123 LFGSERFGMQNDDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWRQALGGFAVQPATPE 182

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              A   E+   L + E +L + G+  P    KK++  L  +F R +L  EE+ +LRG+ 
Sbjct: 183 PKLADAAEVAGMLGHWEEALTDIGFLDPA-SPKKLMPRLNQLFNRAQLSPEEIHILRGVA 241

Query: 244 STLDKFSRQS 253
             + + + ++
Sbjct: 242 KAMSRTANKA 251


>gi|239816538|ref|YP_002945448.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           S110]
 gi|239803115|gb|ACS20182.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           S110]
          Length = 243

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 15/241 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73
           IL+      N+G  ARAM       L LV PR  W +    E+    ++ A  V+ + R+
Sbjct: 6   ILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLTNARI 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+  +  + AT    R+       P+E    L ++    Q+V  +FG ER+G+ 
Sbjct: 64  VETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKQ--GEQHVAFLFGSERFGMR 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---ATKG 190
           NE++   N  +S P +P F SLN+  A+ ++ +E     +      V++   P   A   
Sbjct: 122 NEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEW---RLALGGYEVRDATAPIEAADAK 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +   L++ E SL E G+  P    KK++  L  +F R +   EE+ +LRGI   +   +
Sbjct: 179 AVAGMLEHWERSLVEIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMADAA 237

Query: 251 R 251
           R
Sbjct: 238 R 238


>gi|261252065|ref|ZP_05944638.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
 gi|260935456|gb|EEX91445.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
          Length = 241

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 13/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L LV+P+     E+  + +A A  + ++  V   
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQTLALAAGAADIAENATVVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+AD   +  ++AR+R     +L P+E      + +  GQ   V ++FGRER GLTN
Sbjct: 66  LTEAVADCALVVGSSARSRTLEWPMLEPRECG---QKFVSEGQESPVALVFGRERTGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKG 190
           +E+   +  +  P NP + SLN++ AV  + +E     ++N    S+    EQ       
Sbjct: 123 DELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLDNE--QSQYQAPEQVEYPRHK 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F  +LE  + +   F   ++  K+++ L  +F R     +E+ +LRG+++ ++K
Sbjct: 181 ELEMFFAHLE-KVAKDTQFISEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAVEK 237


>gi|257053717|ref|YP_003131550.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
           DSM 12940]
 gi|256692480|gb|ACV12817.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
           DSM 12940]
          Length = 237

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 11/230 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFS 75
           + +VD Q   N+G +ARAM NF L+ L+LV+P +  P  +A   +  A D ++ S  V +
Sbjct: 5   VAVVDAQTPGNVGTIARAMKNFGLSDLKLVDPPELDPDGEAYGYAGQARDDIMPSADVVT 64

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134
             +E + + H +  T   N +  K V  P      L E +     +V ++FGRE  GL+N
Sbjct: 65  -FEEIVNNYHTVATTAITNEDATKHVRYPFVTPRELGEELKGIDSDVCLVFGREDVGLSN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGEL 192
           EE+A  + I S P +  +P LN+ QA  ++++E    ++  ++  +     + PA +G  
Sbjct: 124 EELAEVDQICSIPASDDYPVLNLGQAATIVLYELRALTVEETQLPEITDRADQPAIEGLH 183

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
             F  +LE+         P EK+ K       +  R      EV  LRG+
Sbjct: 184 DQFGSFLEV------IDHPEEKRAKAGRLFRRVIGRAHPTGREVRTLRGL 227


>gi|93006040|ref|YP_580477.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393718|gb|ABE74993.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 293

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 15/158 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           +++V+  L  NIG  ARAM    L++L +V+P+   P  + + S +A    ++ S  +  
Sbjct: 25  VVMVNTTLPANIGSAARAMHTMGLSRLTVVDPK--LPIDDTSVSHAAGGSDLLSSAIIAP 82

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-----NERIFSGQ-------NVGI 123
            L+ AIAD   ++A ++R+R+  + V+ P +AA ++      +   +GQ       N+ I
Sbjct: 83  TLESAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSTVNGQDGINTAPNIAI 142

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           +FGRE  GLTNEE+A ++  +    NP +P LN++ AV
Sbjct: 143 LFGREDRGLTNEELAYADYHVQIDANPAYPVLNVASAV 180


>gi|117621440|ref|YP_857524.1| putative RNA methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562847|gb|ABK39795.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 230

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV P    N+G  ARAM       +RLV  R     E+A   +  A  V+     F  L
Sbjct: 6   VLVAPARPANVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEVLTQAEAFDTL 64

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +EA+AD+  + ATTAR R  ++  L P E    +  +  S   V I+FG E  GL+NE++
Sbjct: 65  EEALADMDLVVATTARQRGRYQHYLTPAEIRDQIKAKP-SLDKVAIVFGCEESGLSNEQL 123

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           A  + I   P+   +PSLN+ QA++L  +E
Sbjct: 124 AQVDLISYLPLKVSYPSLNLGQAIMLYAYE 153


>gi|297619714|ref|YP_003707819.1| TrmH family RNA methyltransferase [Methanococcus voltae A3]
 gi|297378691|gb|ADI36846.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus voltae
           A3]
          Length = 246

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 17/200 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVIDSV 71
           +ILV+P+   N+G +AR M NF+   LR+V  + G   E   +  A     +A  ++++ 
Sbjct: 5   VILVNPKYSGNLGAIARTMMNFDTYDLRIVQNKLGEKPETILNDEAFIRAVHAKEILENA 64

Query: 72  RVFSNLKEAIADLHFIYATTAR---NRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGR 127
           + +  L+EA  D+ ++ ATT        N K V + P+E A    + I    N+ I+FGR
Sbjct: 65  KFYKTLEEASYDIDYLVATTGAVSIGDKNIKRVPMTPRELA---EKSISLKGNLAIVFGR 121

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQN 184
           E  GL NE++ L + ++S P    +P +N+S AV ++++E    SI   +  + NVKE  
Sbjct: 122 EDDGLRNEDVELCDLLVSIPTCSNYPIMNLSHAVSVILYELYSISIGNAIPYDTNVKEA- 180

Query: 185 TPATKGELLS-FLDYLEISL 203
           +   K  LLS F D+++ SL
Sbjct: 181 SKEDKDILLSIFNDFVDKSL 200


>gi|90410858|ref|ZP_01218872.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90328071|gb|EAS44382.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 218

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 112/215 (52%), Gaps = 10/215 (4%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
             LT L LV+P     ++    ++  AD V+ + ++   L EAIAD   +  ++AR+R  
Sbjct: 3   MGLTNLVLVDPACEIDAKSLALAAGAAD-VVTNAKIVKTLDEAIADCGLVIGSSARSRTL 61

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
               L P+E+ I   E   +   V I+FGRER GLTNEE+   +  +  P NP + SLN+
Sbjct: 62  EWPQLDPRESGIKTIEEA-AAHPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSLNL 120

Query: 158 SQAVLLMVWEC----MENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVE 213
           + AV  + +E     +E+   + EK V E   P  K EL  F ++LE  +  +  F   +
Sbjct: 121 AMAVQTVSYEVRMAFLESQKYTGEKKVDEY--PRAK-ELELFYEHLE-KVTTQTQFINKK 176

Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               ++  L  +F R    ++E+ +LRGI+S+++K
Sbjct: 177 HPGMVMTKLRRMFTRARPEQQELNILRGILSSIEK 211


>gi|15805603|ref|NP_294299.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6458273|gb|AAF10156.1|AE001916_2 RNA methyltransferase, putative [Deinococcus radiodurans R1]
          Length = 255

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 13/219 (5%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M+  AP    +A+   ++LV P+   NIG  ARAM N   + LR+V PR  +   +A + 
Sbjct: 1   MSSAAPS--PTAQSLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDYLDSQAVAM 58

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           + +A  ++ S +++  L+EA+AD      T+AR R +  +   P +   ++ E       
Sbjct: 59  AVHAGDLLRSAKIYPTLREALADRDLSVGTSARIRADLPAPRHPAQVRGLVRE----AAA 114

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             ++FG E  GL N ++      +  P    + SLN++QAVLL+ +E ++      + +V
Sbjct: 115 PALVFGPEETGLINSDLEQCQVTVRIPTGD-YASLNLAQAVLLVCYEFLQG-----QDDV 168

Query: 181 KEQN-TPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
            E +   AT+ ++ +   +L+ ++   GY   V  +  M
Sbjct: 169 PEHSRQTATREDMEAMYGHLQDTMHLIGYTDAVRGRHTM 207


>gi|329119228|ref|ZP_08247915.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464575|gb|EGF10873.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 269

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 124/269 (46%), Gaps = 28/269 (10%)

Query: 1   MTPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-------- 51
           MTP AP  L N A    ++L       NIG  ARAM    LT+L LV P+          
Sbjct: 1   MTPAAPAYLDNIA----VVLTRTSHPANIGSAARAMKTMGLTRLILVAPKLMATPMTPAP 56

Query: 52  ------------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK 99
                        P E    +S  AD V+D+      L  A+AD     A T R R    
Sbjct: 57  PPFDPQKPQAFRLPEESYILASGAAD-VLDAAITVPTLDAALADTVVSCALTGRKRELTA 115

Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            +  P+E A  +     +G    ++FG E +GL+ EE+   N +++   NP + SLN++Q
Sbjct: 116 PLQTPRELAPEILHTARAGCRAALVFGNETFGLSIEEVQSCNRLMTIAGNPAYFSLNLAQ 175

Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219
           AV ++ +E + +   +   ++  Q  PAT  ++     ++   ++E G+F       +++
Sbjct: 176 AVQVVAYE-LYSQTEADLSHLVPQKHPATHDQVAGMTAHMAELMDEIGFFN-RRNSPRII 233

Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             L+++F R +   E++ L+RG  +T+ K
Sbjct: 234 RRLHNLFARAKPETEDIDLMRGFFNTVGK 262


>gi|294670969|ref|ZP_06735825.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307456|gb|EFE48699.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 272

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 23/252 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLV-------------------NPRD-GWPSEK 56
           I+L       NIG  ARAM    LT+L LV                   NP+    P E 
Sbjct: 17  IVLTRTSHPGNIGSAARAMKTMGLTKLTLVAPNLMQTPMTAEPPVFDPANPQAFKLPEES 76

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
              +S  AD V+++ R+ + L+EA+AD     A T+R R     +  P+     L     
Sbjct: 77  FILASGAAD-VLENARICATLEEALADTVLSCALTSRRRELTAELQTPRALTPELLSAAE 135

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + Q   ++FG E +GL+ EE+   N +++   NP + SLN++QAV ++ +E    +  S 
Sbjct: 136 AEQQTALVFGNETYGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIYSQTDSSM 195

Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
           E    E+NT AT  ++   + +++  +E+ G+F      ++++  L ++F R     E++
Sbjct: 196 EHLKVEKNT-ATHAQIGGMVAHMQGLMEDIGFFN-RRNGERIIRRLQNLFARAGTETEDI 253

Query: 237 FLLRGIVSTLDK 248
            +LRG  +T+ K
Sbjct: 254 DILRGFFNTVKK 265


>gi|148241831|ref|YP_001226988.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850141|emb|CAK27635.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
          Length = 248

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 1/239 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   NF +  LRLV PR      +A+  +      + +  ++ 
Sbjct: 6   AVVLVEPSGPLNVGSVARLCANFGVASLRLVAPRCDPTDPQAKQMAVRGLEQLLACELYP 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L++A+AD   + A + R     +  L P+ A   L E      +V ++FGRE  GL + 
Sbjct: 66  SLEDAVADCRRVVACSGRVEAKEREHLLPQPALQWLLEPKPGPNHVALVFGREDHGLHSS 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L+  ++  P +  + SLN+S AV + + E    + V  +              L + 
Sbjct: 126 ELNLAGKLLRIPTSEAYGSLNLSHAVAICLAEHQRLAHVPMDSASDSSPPLPAHAALEAA 185

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           +   E  L E G+  P     +M   L  + +R E    EV LLRG+V  L   SR  +
Sbjct: 186 MQDAEELLLEVGFLYPHTAAARM-AKLRQLMLRSEPSEAEVALLRGMVRQLRWASRHGA 243


>gi|325928099|ref|ZP_08189312.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
           91-118]
 gi|325541597|gb|EGD13126.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
           91-118]
          Length = 228

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 8/230 (3%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    +++L LV P      E A   SA A+ V+    +F+ L EA+AD   +   TAR 
Sbjct: 1   MKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSQAPIFATLGEAVADCTLVIGCTARA 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R      L P E A     +      V  +FGRER GLTN+E+ L +A +  P +P F S
Sbjct: 60  RRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208
           LN++ AV ++ +E     + + E           ++ PA+  +L      L  +L+E  +
Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAERAPAAAPGLRDGPASHAQLEGMFGQLGDTLDEIDF 179

Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
            +    +  M   L  + +R E+  +EV L+RGI+S   + +  + +  N
Sbjct: 180 HKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLAKQAGN 228


>gi|212224617|ref|YP_002307853.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009574|gb|ACJ16956.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 239

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 23/195 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   NIGM+AR M NF   +L L+NP     +E++   + +A  V++   +   
Sbjct: 5   VILVEPEGPANIGMIARTMKNFGFNELVLINPNI---TEESYLYAVHARDVLERAAIVET 61

Query: 77  LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +EA+  +     TT +    +   ++ + P E A  L    +SG+ +GI FGRE  GL 
Sbjct: 62  FEEALGLVDLAVGTTGKPGKRYIPDRAPMMPWELAEALQG--YSGR-IGIFFGRESIGLK 118

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---- 189
           NEE+   +  ++ P + ++P +N+SQAV ++++E  +       K +     PAT+    
Sbjct: 119 NEELERMDLTVTIPTSEIYPVMNLSQAVAVILYELAKG----RRKAIHPSLEPATREEKE 174

Query: 190 ------GELLSFLDY 198
                 G LL  LDY
Sbjct: 175 ALIRTWGRLLDVLDY 189


>gi|115375837|ref|ZP_01463088.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367147|gb|EAU66131.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 231

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           P+  EN+G  ARAM N  L++   V P   D  P   AR  + +A+ ++D VR   +L+ 
Sbjct: 3   PRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP---ARRLAVHAEELLDGVRREDSLEA 59

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A+AD  ++  T++R     + +L P+     L  R   G  V I+FG ER GLTN E+  
Sbjct: 60  AVADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARAAQGP-VAIVFGDERSGLTNAEVER 117

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
            + + + P +P  PS+N++QAVLL  +E    S+ ++          A+  EL    + L
Sbjct: 118 CHDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELARVEETL 177

Query: 200 EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           E  L+  G+       +  L D+++   R  L   E  L    + TL K
Sbjct: 178 ETLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRK 226


>gi|241763475|ref|ZP_04761528.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii
           2AN]
 gi|241367316|gb|EER61647.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii
           2AN]
          Length = 283

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 36/260 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73
           IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+++ R+
Sbjct: 21  ILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLENARI 78

Query: 74  FSNLKEAIADLHFIYAT----------TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG- 122
            + L EA+  +  + AT          TA  R +F+ +L  + A   LN +    QN   
Sbjct: 79  VATLDEALDGMSHLCATAMTPRDFGPPTAAPRAHFEMLLKRERA--TLNGQALQAQNASN 136

Query: 123 ----------------IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                            +FG ER+G+ NE++   +  +S P NP F SLN+  A+ ++ +
Sbjct: 137 PDAAGPEAAGAEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPRFGSLNLGAAIQVVAY 196

Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
           E  +     + +        A   ++   L + E +L   G+  P    KK++  L  +F
Sbjct: 197 EWRQALGGFAVQAATPDRVQADAAQVAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLF 255

Query: 227 IRPELMREEVFLLRGIVSTL 246
            R +L  EE+ +LRG+   +
Sbjct: 256 NRAQLGAEEIHILRGVAKAM 275


>gi|87124813|ref|ZP_01080661.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
 gi|86167692|gb|EAQ68951.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
          Length = 254

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 118/258 (45%), Gaps = 19/258 (7%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P AP+L        ++LV+P    N+G VAR   N+ +T LRLV PR      +AR  +
Sbjct: 6   APGAPRL-------CVVLVEPAGPINLGSVARLCANYAITDLRLVAPRCNPADPEARRMA 58

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL----NERIFS 117
            +   V+DS   + +L  A+     + AT  R  +    +  P++    L         S
Sbjct: 59  VHGQAVLDSATHYPDLISALHGCRRVVATCGRLDHGTIPLHPPEQVLPWLLADHGAAEAS 118

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIV 174
                ++FGRE  GL+N+E+ LS  +I+   +P +PSLN+S AV +++ E   C    + 
Sbjct: 119 QAAAALVFGREDRGLSNDELLLSQRVIALYSDPHYPSLNLSHAVAVVLHELERCRRQPVA 178

Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
           +   ++     PA   +L   L+     L E G+        +M   +  +  R  +  +
Sbjct: 179 APALDLD----PAAPQQLEDCLEAARSLLLETGFLLEHTAHARM-AKVRGLLQRALIRSD 233

Query: 235 EVFLLRGIVSTLDKFSRQ 252
           EV +LRG+V  L    RQ
Sbjct: 234 EVAMLRGMVRQLRWALRQ 251


>gi|257453749|ref|ZP_05619030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
           SK60]
 gi|257448841|gb|EEV23803.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
           SK60]
          Length = 278

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 135/266 (50%), Gaps = 41/266 (15%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR 72
           G  I++V+  L  NIG  ARAM    LTQL +V P+   P  E A + +A A  ++D+V 
Sbjct: 22  GIRIVMVNTTLPANIGSAARAMHTMGLTQLTVVAPK--LPIDEDAYAHAAGAKAILDAVT 79

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-----------IVLNERIFSGQNV 121
           +   L++A+ D H++ AT++R R+  + VL+P++AA            ++ +       +
Sbjct: 80  ICDTLEQALQDCHWVIATSSRQRHIPRPVLSPRQAAELMVTNFHNLGDLMTDAAHRNWQL 139

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV---WECMENSI---VS 175
            I+FGRE  GLTNEE+ L++  I  P N  +  LN++ AV ++    +E  E ++    +
Sbjct: 140 AIVFGREDRGLTNEELQLADYHIQIPANAEYGVLNVAAAVQVIASVFYETAELALTAKTA 199

Query: 176 SEKNV-----KEQNTPATKGE--------LLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222
           +EK++     ++ + P    E        LL+ L+ LEI       + P +  K M   +
Sbjct: 200 AEKSIDLTFRQQWDEPPISNEQRLQLENRLLALLENLEI-------YNPAQ-SKVMPQRI 251

Query: 223 YSIFIRPELMREEVFLLRGIVSTLDK 248
             +  R +L  +E  LL+  ++ L K
Sbjct: 252 NRLLSRIQLDIKEYQLLQATIAKLLK 277


>gi|240102381|ref|YP_002958690.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
 gi|239909935|gb|ACS32826.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
          Length = 243

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 21/196 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P ++LV+P+   NIGMVAR M NF  ++L LVNP     SE++ S + +A  V+ +  + 
Sbjct: 12  PSVVLVEPEGPANIGMVARTMKNFGFSRLVLVNPNL---SEESYSYAVHARDVLKNATIV 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132
              +EA+        TT +    F S  AP      L E +  ++G+ VG+ FGRE  GL
Sbjct: 69  ETFEEALELFDLTVGTTGKPGRRFISYRAPL-YPWELRETLKGYTGE-VGLFFGRESIGL 126

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK--- 189
            NEE+   + I++ P +  +P +N++QAV ++++E  +     S + +K    PAT+   
Sbjct: 127 KNEELERLDLIVTIPTSEDYPVMNLAQAVAVILYELSKTRPEPSVEALK----PATRDEK 182

Query: 190 -------GELLSFLDY 198
                   ELL  L+Y
Sbjct: 183 EALVRVWAELLKVLEY 198


>gi|145299949|ref|YP_001142790.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852721|gb|ABO91042.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 230

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV P    N+G  ARAM       +RLV  R     E+A   +  A  ++     F  L
Sbjct: 6   VLVAPARAPNVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEILTQAEAFDTL 64

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD+  + ATTAR R  ++  L P E    +  +  S   V I+FG E  GL+NE++
Sbjct: 65  PEALADMDLVIATTARQRGRYQHYLTPGEIRDQIRAKP-SLNKVAIVFGCEESGLSNEQL 123

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           A ++ +   P+   +PSLN+ QA++L  +E
Sbjct: 124 AHADLLSYLPLKVSYPSLNLGQAIMLYAYE 153


>gi|116073105|ref|ZP_01470367.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
 gi|116068410|gb|EAU74162.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
          Length = 241

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 106/227 (46%), Gaps = 15/227 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G VAR   NF +  LRLV PR       A   + +   V+ S R++  L  A++D   
Sbjct: 8   NVGSVARLCANFAVHDLRLVTPRCDPSDPDALRMAVHGRSVLTSARIYPTLLAAVSDCSR 67

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           + AT  R  ++    L P EA +         Q + ++FGRE  GLTN E+ LS  +I+ 
Sbjct: 68  VVATAGR-LDHGTIPLGPPEAVLPWAISGSGQQPIALVFGREDHGLTNAELLLSQRVITL 126

Query: 147 PVNPLFPSLNISQAVLLMVWEC----------MENSIVSSEKNVKEQNTPATKGELLSFL 196
             +  +PSLN+S AV +++ +            E  +VS E    E   PA    L + L
Sbjct: 127 HSSDTYPSLNLSHAVAVVLHDIARLQTGPSPHAEPVLVSPETPETE---PAGPKALEACL 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           D  E  L E G+      + +M   +  +  R  +  +EV LLRG+V
Sbjct: 184 DDAEELLLEVGFLMKHTARARM-AKVRGLLQRGLIRADEVALLRGMV 229


>gi|330830514|ref|YP_004393466.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328805650|gb|AEB50849.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas veronii
           B565]
          Length = 234

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 8/153 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV P    N+G  ARAM       +RLV  R     E+A   +  A  ++     F  L
Sbjct: 6   VLVAPARPANVGAAARAMKTMGFDAMRLVASRV-HEEEEASWVAHGAQEILTQAEAFDTL 64

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLTN 134
            EA+AD+  + ATTAR R  ++  L P E    + E+I S      V I+FG E  GL+N
Sbjct: 65  PEALADMDLVIATTARERGRYQHYLTPGE----IREQIRSKPSLNKVAIVFGCEESGLSN 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E++A  + I   P+   +PSLN+ QA++L  +E
Sbjct: 121 EQLAEVDLISYLPLKVSYPSLNLGQAIMLYAYE 153


>gi|213421799|ref|ZP_03354865.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 200

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 9/198 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGE 191
           +E+   +  ++   NP + SLN++ AV ++ +E     + + E       + TP     +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDD 182

Query: 192 LLSFLDYLEISLEERGYF 209
           L  F  +LE +L   G+ 
Sbjct: 183 LERFYGHLEQTLLSTGFI 200


>gi|188576184|ref|YP_001913113.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520636|gb|ACD58581.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 228

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 8/230 (3%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    +++L LV P      E A   SA A+ V+    +F+ L EA+AD   +   TAR 
Sbjct: 1   MKTMGVSRLVLVAPERAL-DEDAYRRSAGAEDVLSEAPIFATLGEAVADCTLVIGCTARA 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R      L P E A     +      V  +FGRER GLTN+E+ L +A +  P +P F S
Sbjct: 60  RRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208
           LN++ AV ++ +E     + + E           ++ PA+  +L      L  +L+E  +
Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQLEGMFGQLGDTLDEIDF 179

Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
            +    +  M   L  + +R E+  +EV L+RGI+S   + +  + +  N
Sbjct: 180 HKGRAPESAMR-KLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLARQAEN 228


>gi|146302851|ref|YP_001190167.1| tRNA/rRNA methyltransferase SpoU [Metallosphaera sedula DSM 5348]
 gi|145701101|gb|ABP94243.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera sedula DSM 5348]
          Length = 231

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 15/184 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   N+G VAR   NF + QL +VNPR      KA   SA     ++ V V S 
Sbjct: 4   VILVEPEGEYNVGFVARLCKNFEVDQLYIVNPR--CDLNKALEFSAKGRDFMEKVVVTST 61

Query: 77  LKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+EA+ DL    +T++      +  +  + P E       ++   +  G++FGRE  GLT
Sbjct: 62  LEEALRDLDLKISTSSIADSKGDMLRKSMPPWEIV-----KLMENRKTGLVFGRESVGLT 116

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            EEI +++ ++  P N  +P LN+S AV ++++E  +++ +        +  PA   E L
Sbjct: 117 REEILMTDIMVHIPANRSYPVLNLSHAVGIVLYEIWKSTHLRG-----GETGPAPSQETL 171

Query: 194 SFLD 197
           S +D
Sbjct: 172 SLVD 175


>gi|304387338|ref|ZP_07369530.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338589|gb|EFM04707.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
          Length = 272

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 125/268 (46%), Gaps = 23/268 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVTPNLMATPMTENPP 60

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 61  VFDPEYPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTLDK 248
            + S+F R     E++ +LRG  +TL +
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTLQQ 265


>gi|158522634|ref|YP_001530504.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511460|gb|ABW68427.1| RNA methyltransferase, TrmH family, group 1 [Desulfococcus
           oleovorans Hxd3]
          Length = 260

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 18/258 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  IILV P++ ENIG   RAM N  L++L++V P    P    ++++     V++ + +
Sbjct: 13  GITIILVRPRIPENIGACCRAMKNMGLSRLKVVAPEAWDPVRIMKTATHACRDVVEKIEI 72

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAP---KEAAIVLNERIFSGQNVGIIFGRERW 130
             +   A++   +I  TTAR     + VL+P    E A+ L         V ++FG E  
Sbjct: 73  VGDTATAVSPFSYIAGTTARMGRQRQMVLSPGGFAEKAVTLCRE----NPVAVMFGPEDR 128

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--AT 188
           GL NE++   + ++  P +  F SLN++QAVL++ +E     +  + +  ++   P  A+
Sbjct: 129 GLENEDLQYCHNLVHIPTSE-FSSLNLAQAVLVICYE-----LFGAARPNQDHFQPRLAS 182

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             EL    D ++  L    + RP +     +++      R  L  +EV L+RG+   ++ 
Sbjct: 183 SFELEGMYDQMKEVLLAIDFLRP-DNPDYWMNNFRRFVSRVGLTAKEVKLIRGVCRQVNW 241

Query: 249 FSRQSSRRNNVLLQKTEK 266
           +  +  R  + L +K +K
Sbjct: 242 YGEK--RYADGLAEKKKK 257


>gi|119713414|gb|ABL97476.1| RNA methyltransferase [uncultured marine bacterium HF130_81H07]
          Length = 243

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 4/235 (1%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV+P    NIG  ARA+ N    +L +V PR     E A   + +A  ++D+  ++ + 
Sbjct: 12  ILVEPSHSGNIGACARAIKNMGFKKLGIVKPRKTITKE-AYYRAKSAKDILDNALIYESF 70

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEE 136
            +AI D + I AT+AR R          + +  +   + S +N   +IFGRE  GL+NEE
Sbjct: 71  DQAIEDKNLILATSARERTIPWPTFFIDDVSEEIKSELQSAKNKTAVIFGREDNGLSNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  +  P +  +PSLN+S A+ L+ +E  + ++ SS     E++  AT  E    L
Sbjct: 131 LQKCHIHLVIPTSVEYPSLNLSHALQLVAFEIRKITLDSSILKSDERDI-ATNEENEKLL 189

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           ++L   L++  ++ P    K++   +  +  +  L + E+ +LRG +S +  F +
Sbjct: 190 EHLMEVLKKIDFYDP-RSSKQVKTRIERLLKKTRLDKMEMGILRGFLSKIMDFEK 243


>gi|94986089|ref|YP_605453.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
           11300]
 gi|94556370|gb|ABF46284.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
           11300]
          Length = 254

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 8/205 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV P+   NIG  ARAM N   + LR+V PR      +A + + +A  ++ S R++ 
Sbjct: 4   AVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDPLDSQAVAMAVHAADLLRSARIYP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L+EA+AD      TTAR R +    L P      +   + +     ++FG E  GL N 
Sbjct: 64  TLREALADRDLSVGTTARLRAD----LPPPRHPAQVRPLVRAASAPALVFGPEETGLVNS 119

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGELL 193
           ++      +  P    + SLN++QAVLL+ +E ++    ++ K+ +  E+ T AT+ E+ 
Sbjct: 120 DLEQCQVTVRVPTAE-YASLNLAQAVLLVCYEFLQAQDETAPKSTRTAERKT-ATREEME 177

Query: 194 SFLDYLEISLEERGYFRPVEKKKKM 218
           +   +L  ++   GY   V  +  +
Sbjct: 178 ALYGHLHETMALIGYTDAVRARHTL 202


>gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 240

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 10/195 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  +   NIG VARAM NF    LRLVN     P  +ARS+  NA  V+ + R F +
Sbjct: 13  VVLVGARNPLNIGAVARAMSNFGFDDLRLVNDYS-IPLAEARSA-VNASHVLQAAREFGS 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EA+AD   IY TTA      +    P +A   + E +     + I+FG E+ GL+NE 
Sbjct: 71  VAEAVADCQLIYGTTAIGERKPEH---PVDALPDVLEHV-GADKIAILFGSEKTGLSNEA 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           ++    +++ P++    S+N+ QA  ++++E +  + V     V     PAT  E L  L
Sbjct: 127 LSHCQRLLTIPMSATNVSMNLGQAAAVILYELVRGNAVP--LRVSTDAAPAT-AEQLGLL 183

Query: 197 D-YLEISLEERGYFR 210
           D  L  +LEE  Y +
Sbjct: 184 DAVLREALEEADYMQ 198


>gi|33240594|ref|NP_875536.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238122|gb|AAQ00189.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 246

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 6/238 (2%)

Query: 17  IILVDPQLGE-NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           IILV+P LGE N+G +AR   NF + +LRLV+PR    + + +  + +    + +  ++S
Sbjct: 12  IILVEP-LGEINLGSIARLCENFGVDELRLVSPRCDPMNIETQKMAVHGKRFLKNACIYS 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ D   + AT  R  +    +   K A   L E       + IIFGRE  GL+N 
Sbjct: 71  NLLDAVNDCVRVVATCGRIDHGDIPLHTSKNALQWLLE-TNPKDPIAIIFGREDRGLSNS 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194
           E+ ++  II+   +  +PSLN+S AV +++ E    N   + +KN     T + K EL  
Sbjct: 130 ELQIAQKIITLKTSEKYPSLNLSHAVAIVLHEFKYYNETSNHKKNFITYKTASAK-ELND 188

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            LD ++  L E G+        +M   +  +  R E   ++V L+RGI+  +  FS++
Sbjct: 189 CLDDVKKLLLEIGFLYDHTANARM-SKIKGLLQRAEARSKDVSLIRGILRQIRWFSKK 245


>gi|219851926|ref|YP_002466358.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
           palustris E1-9c]
 gi|219546185|gb|ACL16635.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
           palustris E1-9c]
          Length = 249

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 13/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I+LV+P    N+G VAR M NF  ++L L+NP    P   +AR+ +++A  ++DS RV S
Sbjct: 6   IVLVEPLYEGNVGSVARVMKNFGFSRLVLINP---CPLGNEARARASHAQDLLDSARVCS 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-----GQNVGIIFGRERW 130
            L+E  A+     ATT       K++  P          I S        + I+FGRE W
Sbjct: 63  -LEEVYAESALTIATTGELS---KTICNPMRMPYYEPSEIRSMIAEIDGTISILFGRENW 118

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           GL N E+A S+ I + P +P +P LN+S AV L+ +E
Sbjct: 119 GLNNGEVAASDLICTIPTSPEYPILNLSHAVGLVCYE 155


>gi|254805142|ref|YP_003083363.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668684|emb|CBA06409.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 272

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 127/268 (47%), Gaps = 23/268 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P+L +      I+L       NIG  ARAM    L +L +V P            
Sbjct: 1   MTAPKPELPDYLGNIRIVLTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 61  VFDPEYPQSFKSPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTLDK 248
            + S+F R     E++ +LRG  +TL +
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTLQQ 265


>gi|332526708|ref|ZP_08402810.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332111111|gb|EGJ11143.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 231

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 13/223 (5%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
           N+G  ARAM     T L LV PR  D    E+  + ++ A  V+   R+ + L EA+  +
Sbjct: 8   NVGAAARAMKVMGFTDLVLVRPRWADVLQREETLAMASGATDVLAGARIVATLAEALDGV 67

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
               AT    R+      AP+     L  R      V  +FG ER GL N+++   +  +
Sbjct: 68  THACATAMTPRDFGPPTAAPRPHFAELAAR--GDDRVAFVFGPERTGLANDDVYRCHVCL 125

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQNTPATKGELLSFLDYLE 200
           S P +P + SLN++QAV ++ ++  +      +V+   + +  +  A +G     L++ +
Sbjct: 126 SIPTHPDYGSLNLAQAVQILAYDWRQAQGGFPVVARTADPRLADAAAVQG----VLEHWQ 181

Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
            +L E G+  P E  KK++  L  +  R  L  EEV +LRGI 
Sbjct: 182 RTLVEIGFLDP-EAPKKLMPRLNQLANRMRLTHEEVQILRGIA 223


>gi|298368968|ref|ZP_06980286.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282971|gb|EFI24458.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 271

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 129/266 (48%), Gaps = 26/266 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           + P  P   N+ +   I+L       NIG  ARAM    L+ L LV              
Sbjct: 4   LKPALPDFLNNIR---IVLTRTSHPANIGSAARAMKTMGLSDLVLVAPNLMSTPMTAVPP 60

Query: 47  -----NPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                NP++   P E    +S  AD V+ + R+ + L +A+AD     A T+R R     
Sbjct: 61  VFDPQNPQNFKLPEESFTLASGAAD-VLHNARITATLDDALADTTISCALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRKLVPELLQAARRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    + +    ++++++  AT  ++   + ++E  +++ G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQTDMPM-THLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|260436456|ref|ZP_05790426.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
 gi|260414330|gb|EEX07626.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
          Length = 248

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 7/237 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV+P    NIG VAR   NF +++LRLV PR    S++A   + +   ++ +  V  
Sbjct: 4   VVVLVEPAGPLNIGSVARLCANFGVSELRLVVPRCDHLSDEAMLMAVHGQALLQAAVVVP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAA----IVLNERIFSGQNVGIIFGRERWG 131
           +L  AI D   I  +  R  +    +  P++A             SG  V ++FGRE  G
Sbjct: 64  DLLTAINDCRRIVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPVALVFGREDRG 123

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATK 189
           L+N E+ L   ++       +PSLN+S AV +++ E    + V++E    E  +  PA  
Sbjct: 124 LSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSVTTETRCIEPPSPDPAAA 183

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             L + LD     L E G+        +M   +  +  R  +  EEV LLRG+V  L
Sbjct: 184 KALSACLDDATDLLLEAGFLLDHTASARM-AKVRDLLQRATVRTEEVALLRGMVRQL 239


>gi|67906560|gb|AAY82666.1| predicted RNA methyltransferase [uncultured bacterium MedeBAC49C08]
          Length = 239

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 3/233 (1%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+     NIG  ARAM +  +  L LVNP++ +PS ++ + + +   V+D   +  NL
Sbjct: 10  VLVETSHPGNIGACARAMNSMGICNLSLVNPKE-FPSTESETRAKSGKKVLDQANIHDNL 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EAI   + +  T+AR+R+    ++       ++NE +   + V I+FG E  GL NE++
Sbjct: 69  NEAINTSNLVIGTSARSRSMPWPMMEINNLGKIINESLARKEKVSIVFGNEAVGLDNEDL 128

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              +  +  P +    SLN+S AV ++  E  + S  S       +   A+  +    ++
Sbjct: 129 GKCDFHLQIPTSE-DSSLNLSHAVQIVAHEIYKGSSSSDLFTQAREVELASSQQKEKLIE 187

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++E+ LE   ++   +  K++   L  +  R +L + E+ +LRGI+S L+  S
Sbjct: 188 HIELVLELLDFYDH-QNPKQVPARLRRLIKRMQLDKLEIGILRGILSNLETTS 239


>gi|547828|sp|P37006|LAST_SERMA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
          Length = 196

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 67/111 (60%)

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           AR  +  A  ++D V+ F+ L++A+AD+ F  ATTAR+R  F     P E    L+ER  
Sbjct: 11  ARWVAHGAGEILDGVQTFATLEQALADVDFTVATTARSRARFHYYCTPPELLEQLSERKQ 70

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 ++FGRE  GLTNEE+AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 71  WVGQAALVFGREDSGLTNEELALADLLTGVPMQADYPSLNLGQAVMVYCYQ 121


>gi|87302133|ref|ZP_01084958.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
 gi|87283058|gb|EAQ75014.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
          Length = 262

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 12/252 (4%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++LV+P    N+G VAR   NF L  LRLV PR     E+AR  + +   +++  ++
Sbjct: 11  GLALVLVEPAGPLNVGSVARLCANFALQDLRLVAPRCDHLGEEARRMAVHGGALLERAQL 70

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQN-----VGIIFGR 127
           + +L  AIAD   + A + R  +    +  P EA   +L  +   G +       ++FGR
Sbjct: 71  YPDLAAAIADRTRVVAASGRVDSQAVPIEGPAEAIPWLLEHQAGPGPSERPSAPALVFGR 130

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----- 182
           E  GL+ +E+  +  I+    +  + SLN+S AV + + E        +E+         
Sbjct: 131 EDRGLSTDELLQAGRILRISTDDGYTSLNLSHAVAITLHELRRCQQGGTERRPSGPAPVI 190

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           +  PA++  L + L   E  L E G+  P     +M   L ++  R ++  EEV L+RG+
Sbjct: 191 RPEPASRELLEAALADAEELLLEVGFLLPHTAHARM-AKLRALLQRAQISAEEVALVRGM 249

Query: 243 VSTLDKFSRQSS 254
           V  L   S++ +
Sbjct: 250 VRQLRWASQRGT 261


>gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
 gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
          Length = 230

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 14/228 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+ ++ ENIG +AR M NF   +L L N      S+++  ++A+A  V+D      N
Sbjct: 4   VVLVELKIPENIGFIARVMKNFGFEKLVLYNCN---VSKESYITAAHAKDVLDKAVKVEN 60

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           LKE + + + +  TT  R+R   + +  P      L E I  G+   I+FGRE +GL +E
Sbjct: 61  LKEYLEEKNLVVGTTGVRSRRVERYIRRPYYTPEELREMI-KGET-AILFGREDYGLYDE 118

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L N I+S P +  +P +N+S A  ++++E      +S  K   E+   AT+ ++   
Sbjct: 119 ELKLCNVIVSVPTSEEYPVMNVSHAAAVILYE------LSKGKFEFEKEEIATQKDVDRL 172

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           ++Y E  +  +  + P  +  +M   L   F R  L + EV  + GI+
Sbjct: 173 VEYFEKLM--KSIWFPEHRIGRMKVVLKRAFGRAALTKYEVDAISGII 218


>gi|218884714|ref|YP_002429096.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
 gi|218766330|gb|ACL11729.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
          Length = 234

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 106/193 (54%), Gaps = 19/193 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV  +   N+G++AR   NFN+ +L +V P      E+A + +A     +   RV  +
Sbjct: 4   IVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVAS--IEEALNYAARGKDFLLKARVTDS 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIF-SGQNVGIIFGRERWGL 132
           L EAI  +  + AT+    +    +      A+ LN   E+IF   ++V I+FGRE  GL
Sbjct: 62  LDEAIKGVDMVAATSDEGYSAGDML----RQAVDLNGFAEKIFPRTRSVAILFGRESTGL 117

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKG 190
           T EEI+ ++ +++ P NP +P+LNISQAV +++WE  +      ++++   N P  A+K 
Sbjct: 118 TREEISKADVLVTIPANPSYPALNISQAVAIVLWELWK------QRSITATNIPPLASKE 171

Query: 191 ELLSFLDY-LEIS 202
            L   LD  +EIS
Sbjct: 172 TLRQLLDLTVEIS 184


>gi|124268025|ref|YP_001022029.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124260800|gb|ABM95794.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 239

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 6/233 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV      N+G  ARAM     + L LV PR  D    E   + ++ A  ++   RV +
Sbjct: 10  VLVGTSHPGNVGAAARAMKVMGFSDLVLVAPRHADVLVQEDTVALASGAADILVRARVVA 69

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+  +    AT    R+      AP+    +  E     Q VG +FG ER+GL+NE
Sbjct: 70  TLSEALEGVTHACATAMTPRDFGPRTHAPRA---LFPELAAGRQRVGFVFGSERYGLSNE 126

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++   ++ +S P    + SLN++QAV L+ ++  +                A    +   
Sbjct: 127 DVYRCHSCLSIPTPADYGSLNLAQAVQLIAYDWRQALGGYPVTPRTPDPALADAAAVQGL 186

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           LD+ + +L   G+  P    KK+L  +  +  R +L  EEV LLRGI +++ K
Sbjct: 187 LDHWQRALVHIGHLDPA-APKKLLPRVNQLLNRAQLTEEEVHLLRGIATSMLK 238


>gi|325265919|ref|ZP_08132605.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982557|gb|EGC18183.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 271

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 126/271 (46%), Gaps = 37/271 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--------------------RDGWPSEK 56
           I+L       NIG  ARAM    L++L LV P                        P E 
Sbjct: 14  IVLSRTSHPANIGAAARAMKTMGLSRLYLVAPNLMQTPMTPNPPAFDPKQPAHFCLPEES 73

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
              +S  AD V+++  +  +L EA+       A T+R R     +  P+E    L     
Sbjct: 74  FTLASGAAD-VLENAVIVGSLPEALTGTVLSCALTSRRRELTSPLQTPRELTPSLLAAAQ 132

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + Q+V ++FG E +GL+ +E+   N +++   NP + SLN++QAV ++ +E    +    
Sbjct: 133 ARQSVALVFGNETFGLSIDEVQHCNRLMTISGNPDYFSLNLAQAVQVVCYELFSQTHQDM 192

Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
              + E+N  AT  ++   + ++E ++E+  +FR    +++M+  L+S+F R +   E++
Sbjct: 193 SYLIPERNL-ATADQVAGMVRHMEQAMEQLDFFRK-RNQERMVRRLHSLFSRADTTTEDI 250

Query: 237 FLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
            +LRG                N++ QKT+K+
Sbjct: 251 DILRGFF--------------NMVQQKTQKT 267


>gi|326570852|gb|EGE20876.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
          Length = 294

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 132/279 (47%), Gaps = 49/279 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I++V   L  NIG  ARA+    L  L +VNPR   P  + + +++A A  ++D   +  
Sbjct: 15  IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL------------------------ 111
           ++K AI D   I+A +AR+R   + VL P  AA V                         
Sbjct: 73  DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNNLATSLDHMNQSA 132

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME- 170
           ++ + +   + I+FGRE  GLTNEE++L++  I  P NP +P LN++ A+ ++     + 
Sbjct: 133 DDLVDTLPKIAILFGREDRGLTNEELSLADYHIQIPANPDYPVLNVASAIQVITATFFDQ 192

Query: 171 -------NSIVSSEK---NVKEQ-----------NTPATKGELLSFLDYLEISLEERGYF 209
                  +S+VS+++     KE+           + PA      + L+   I+L +R   
Sbjct: 193 FASTLTPSSLVSTKQIQGMTKEEYSLPIHIRSDWDEPAITQAQSASLERAIIALMQRLNL 252

Query: 210 RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              +  K + + L  +  R +L ++E  L+R +++ ++K
Sbjct: 253 AHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINK 291


>gi|313668483|ref|YP_004048767.1| SpoU methylase family protein [Neisseria lactamica ST-640]
 gi|313005945|emb|CBN87402.1| SpoU methylase family protein [Neisseria lactamica 020-06]
          Length = 271

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 23/250 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLV----------------NPRD----GWPSEK 56
           I+L       NIG  ARAM    L +L +V                NP D      P E 
Sbjct: 17  IVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPPVFNPDDVQSFALPEES 76

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
              +S  AD V+++  + ++L EA+AD     A T+R R     +  P++    L +   
Sbjct: 77  FILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAAQ 135

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G+ V ++FG E +GL+ EE    N +++   NP + SLN++QAV ++ +E    +  S 
Sbjct: 136 RGEQVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTD-SP 194

Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
             ++++++  AT  ++   + ++E  +++ G+F      ++++  + S+F R     E++
Sbjct: 195 MTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANTQTEDI 253

Query: 237 FLLRGIVSTL 246
            +LRG  +T+
Sbjct: 254 DILRGFFNTV 263


>gi|320354680|ref|YP_004196019.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
           2032]
 gi|320123182|gb|ADW18728.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
           2032]
          Length = 264

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 8/238 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P+  ENIG  AR   NF + +L +V+  D       + ++  A  +I  +RV   
Sbjct: 16  IILVGPKFPENIGASARIASNFGIAELIVVSEEDFDQERMLKMATHKAAHLIHGMRVCRT 75

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERWGLTN 134
             EA A  HFI  TTAR   +      P+E  A IV    + +G  VG++FG E  GL+N
Sbjct: 76  TAEAAAPFHFIVGTTARQGRHRPQDQTPREVMAEIV---PLLAGNRVGLMFGPEDSGLSN 132

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           E++ L     + P    F SLN++QAV +  +E +  ++ +        +  A   +L  
Sbjct: 133 EDLDLCQFASTIPTAG-FSSLNLAQAVAIHCYE-LYTAVHTHPFAAIPTSEFANSFDLEG 190

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             +++E +L E  +     +   M  ++     R  L ++E  ++RGI   L    RQ
Sbjct: 191 MYEHIEQALNEITFLHDTNRVYWM-RNIRQFLSRLRLKKKEASMIRGICRKLMWHHRQ 247


>gi|332970351|gb|EGK09343.1| RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 265

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 23/235 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNP--------------------RDGWPSEKARSSSANADC 66
           NIG  ARAM    L+QL LV P                    +   P E    +S   D 
Sbjct: 23  NIGAAARAMKTMGLSQLVLVAPNIMATPMTPEPPEFIAEQAEQFVLPEESFILASGAVD- 81

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V+++ ++ + L EA++      A T+R R     +  P+E    L     SGQ V ++FG
Sbjct: 82  VLENAKIVATLPEALSGSVLNCALTSRRRELTSPLQTPRELTPSLLAAAQSGQTVSLVFG 141

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E +GL+ +E+   N +++   NP + SLN++QAV ++ +E            + E+N  
Sbjct: 142 NETFGLSIDEVQHCNRLMTISGNPNYFSLNLAQAVQVVCYELFSQVNQDMSHLIPERNL- 200

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
           AT  ++   + +LE ++ +  +FR    +++M+  L+++F R +   E+V +LRG
Sbjct: 201 ATADQVAGMVQHLEQTMGQLDFFRS-RNQERMMRRLHALFNRADTTTEDVDILRG 254


>gi|186682631|ref|YP_001865827.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186465083|gb|ACC80884.1| RNA methyltransferase, TrmH family, group 1 [Nostoc punctiforme PCC
           73102]
          Length = 246

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 111/237 (46%), Gaps = 4/237 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S  G  I+LV+P    NIG +AR M NF L  L LVNP+    S +A   + +A  +I+S
Sbjct: 2   SLAGLRIVLVEPAGPINIGAIARVMKNFGLYNLVLVNPQCDPLSTEALMMAVHAQEIIES 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             + + L EA+       ATT R R+    +  P+ A   L E     +   +IFGRE  
Sbjct: 62  AVLVATLPEALHGCVRAIATTGRVRSLETPLENPRTALPWLLEE--PEKPTALIFGREDR 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+NEE+  +   +  P +  + +LN++ AV +  +E +  S    +     Q   A   
Sbjct: 120 GLSNEELNYAQRFVGIPTSKDYVALNLATAVAICCYE-LSQSAQQFDTQTITQTELAPLD 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            L  +   LE  L + GY  P     +M      ++ R  L   EV +LRGI+  ++
Sbjct: 179 VLEGYYQQLESLLLKIGYVYPHTAASRM-GKFRQLYNRAHLKTGEVAMLRGILQQVE 234


>gi|40063429|gb|AAR38240.1| RNA methyltransferase, TrmH family, group 1 [uncultured marine
           bacterium 580]
          Length = 248

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 12/237 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L       NIG  ARA+     T L LVNP+  +P  +A + +A A+ ++ +  + S 
Sbjct: 13  IVLCRTSHPGNIGSSARAIKTMGFTHLTLVNPKQ-FPHAEANALAAGAEDILANATIVST 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +++A+ D H I   TAR R   +     +E A  L     S + + ++FG E  GL+N+E
Sbjct: 72  IEDALKDSHLIIGFTARQRELSQEHKNIREIASKLKSESHS-KKIALLFGNETNGLSNDE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----ENSIVSSEKNVKEQNTPATKGE 191
           +   + +     N  + SLN++QA+ ++ +E       +N+I+ S K    +N   T   
Sbjct: 131 VKHCHMLGYINSNTKYSSLNLAQAIQIICYEIRMQLSEDNAIIQSSK----KNELVTHEV 186

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              F  +LE  L E G+ + ++   +++  L  +F R  + ++EV +LRGI++ + K
Sbjct: 187 QNGFYLHLEQLLTEIGFLKKIQ-GDRLMQRLRLLFNRTTMEKDEVNILRGILTDIQK 242


>gi|319637892|ref|ZP_07992658.1| SpoU methylase [Neisseria mucosa C102]
 gi|317401047|gb|EFV81702.1| SpoU methylase [Neisseria mucosa C102]
          Length = 271

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTSEKPALPAYLDNIRIILTRTSHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 61  VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P+E    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRELVPELLQATNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|225076736|ref|ZP_03719935.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
           NRL30031/H210]
 gi|224951934|gb|EEG33143.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
           NRL30031/H210]
          Length = 304

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 126/266 (47%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P L        IIL       NIG  ARAM    L +L +V              
Sbjct: 34  MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93

Query: 47  --NPRD----GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
             NP D      P E    +S  AD V+++  + ++L +A+AD     A T+R R     
Sbjct: 94  VFNPDDVQSFALPEESFILASGAAD-VLENATIAASLDKALADTTIACALTSRRREITAP 152

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 153 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 212

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 213 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 270

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 271 RMQSLFGRANTQTEDIDILRGFFNTV 296


>gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
 gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
          Length = 243

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 14/201 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+++LV+P+   N+G V RAM NF + QLRLV   D + S+  +  S  A  ++     F
Sbjct: 6   PIVVLVEPRQPGNVGAVCRAMANFGVAQLRLVKSCDPFHSDAVK-FSVGARPLLGQAEHF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+AD+H   A T R     +  L P E      + + +   V  +FGRE  GLT 
Sbjct: 65  PDLAAALADVHHSVALTRRT-GRLRGNLLPLEELSQRFQSVAAQSRVAFVFGREDRGLTT 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKEQNTPATKG 190
           +E+AL +   +        SLN++QAV++ ++E         IV  ++   +Q  P    
Sbjct: 124 QEVALCSQAATIETTDETGSLNLAQAVVVTLYELSRRQDRVGIVQRDQPTHDQFEP---- 179

Query: 191 ELLSFLDYLEISLEERGYFRP 211
            L   LD L   +   GY  P
Sbjct: 180 -LFQQLDEL---VHRVGYVNP 196


>gi|227830363|ref|YP_002832143.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.S.2.15]
 gi|229579181|ref|YP_002837579.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.G.57.14]
 gi|229582067|ref|YP_002840466.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.N.15.51]
 gi|284997869|ref|YP_003419636.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.D.8.5]
 gi|227456811|gb|ACP35498.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.S.2.15]
 gi|228009895|gb|ACP45657.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012783|gb|ACP48544.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.N.15.51]
 gi|284445764|gb|ADB87266.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.D.8.5]
          Length = 237

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 10/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   NIG VAR   NF++ +L +VNPR      +A   SA     ++  ++ +N
Sbjct: 4   VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRAN--VSEAFKFSAGGKEFLEKAKIVNN 61

Query: 77  LKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             EAI D+    AT++   NN    +  + P E        +  G+ V ++FGRE  GLT
Sbjct: 62  FDEAINDVDIKIATSSIADNNGDILRKSIRPWELL-----SLIQGKKVALVFGRESVGLT 116

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            EEI   + ++  P NP +P LN+S AV ++++E  +N
Sbjct: 117 REEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKN 154


>gi|254673050|emb|CBA07666.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           alpha275]
          Length = 271

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 61  VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVSELLQTTNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|315231328|ref|YP_004071764.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
 gi|315184356|gb|ADT84541.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
          Length = 245

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 98/170 (57%), Gaps = 13/170 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   NIG VARAM NF++ +L LVNP +     +A   + +A  V+++ ++   
Sbjct: 5   VILVEPEYQMNIGFVARAMKNFDVKELILVNPPE--LRGEAYKFAMHAKDVLENAKIVKT 62

Query: 77  LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGL 132
           + EA+  +     TT  +   +   ++ ++P+E A    +R F  G  +GI FGRE  GL
Sbjct: 63  VDEALKIVDVAVGTTGISGKVYLPERTPISPEEFA----KRAFLYGGKIGIFFGRESKGL 118

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKN 179
           +NEE+   +  ++ P +  +P +N+S AV ++++E  +  +   +S+E+N
Sbjct: 119 SNEELEKMDFTVTIPTSEEYPVMNLSHAVAVVLYEIYKQRVKAEISTEEN 168


>gi|119719459|ref|YP_919954.1| RNA methyltransferase [Thermofilum pendens Hrk 5]
 gi|119524579|gb|ABL77951.1| RNA methyltransferase, TrmH family, group 1 [Thermofilum pendens
           Hrk 5]
          Length = 257

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 124/249 (49%), Gaps = 16/249 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           AK   +  V+P   +NIG +AR+M NF L +L LV PR     E  R +   AD V ++V
Sbjct: 13  AKEVSVAFVEPLYEQNIGYIARSMKNFCLAKLYLVKPRCSVGLESRRYAMHAADIVENAV 72

Query: 72  RVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +  +L E +     +  TT  + +   +  ++P E A +  E   +G  + ++ GRE W
Sbjct: 73  -IVGSLGELVGMHDLVACTTGVKGKPPLRRYVSPGEMASLFAES--TGSKL-VVIGREDW 128

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+ EE+++ + +++   NP +PSLN S A  ++ +E     + +   +V++      + 
Sbjct: 129 GLSAEELSICDMLVTIEANPEYPSLNASHAAAIVFYE-----LFNKYHSVQQSLERPPRE 183

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV----STL 246
           E+ +FL +L       GY     + +++L  +  +       + ++ +L G+V     T+
Sbjct: 184 EVEAFLKHLGDLTTLLGYDET--RSERLLLSIKRLLAETRFSKTDLRILFGLVRDSLETI 241

Query: 247 DKFSRQSSR 255
            +  R+S+R
Sbjct: 242 KRTHRESAR 250


>gi|309378837|emb|CBX22542.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 272

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 23/252 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--------------------DGWPSEK 56
           I+L       NIG  ARAM    L +L +V P                        P E 
Sbjct: 17  IVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPPVFDPEYPQSFKLPEES 76

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
              +S  AD V+ +  + + L EA+AD     A T+R R     +  P++    L +   
Sbjct: 77  FILASGAAD-VLHNAAIVATLDEALADTAIACALTSRRREITAPLQTPRDLVPELLQAAQ 135

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV ++ +E    +  S 
Sbjct: 136 RGEQVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQT-GSP 194

Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
             ++++++  AT  ++   + ++E  +++ G+F      ++++  + S+F R     E++
Sbjct: 195 MTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANTQTEDI 253

Query: 237 FLLRGIVSTLDK 248
            +LRG  +TL +
Sbjct: 254 DILRGFFNTLQQ 265


>gi|194736168|ref|YP_002117509.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194711670|gb|ACF90891.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
          Length = 203

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
              T LR+V+ +          +  + D +ID++ VF  L +A+ D+ F  ATTAR+R  
Sbjct: 1   MGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFHTLADALHDVDFTVATTARSRAK 59

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           F    +P E   +L E+    ++  ++FGRE  GLTN+E+AL++ +   P+   +PSLN+
Sbjct: 60  FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119

Query: 158 SQAVLLMVWE 167
            QAV++  ++
Sbjct: 120 GQAVMVYCYQ 129


>gi|161617913|ref|YP_001586278.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161367277|gb|ABX71045.1| hypothetical protein SPAB_05780 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 203

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
              T LR+V+ +          +  + D +ID++ VF  L +A+ D+ F  ATTAR+R  
Sbjct: 1   MGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFQTLADALHDVDFTVATTARSRAK 59

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           F    +P E   +L E+    ++  ++FGRE  GLTN+E+AL++ +   P+   +PSLN+
Sbjct: 60  FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119

Query: 158 SQAVLLMVWE 167
            QAV++  ++
Sbjct: 120 GQAVMVYCYQ 129


>gi|121611165|ref|YP_998972.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121555805|gb|ABM59954.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 266

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 128/258 (49%), Gaps = 24/258 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73
           +L++     N+G VARAM       L LV PR  WP+    E+    ++ A  ++   R+
Sbjct: 6   VLINTSHAGNVGAVARAMKTMGFDDLVLVAPR--WPNVLRHEETIQRASGALDLLRQARI 63

Query: 74  FSNLKEAIADLHFIYAT--TARN--------RNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            + L +A+  +  + AT  TAR+        R +F+++L  KE  +  +    + +  G+
Sbjct: 64  VAGLDQALDGISHLCATAMTARDFGPPTTTPRAHFETLLK-KERPVHDSSAPAATRPTGV 122

Query: 124 --IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEK 178
             +FG ER+G++N ++   +  +S P  P F SLN+  AV ++ +E    ++   ++   
Sbjct: 123 AFLFGSERFGMSNADVYRCHVTLSIPTQPGFGSLNLGAAVQVIAYEWRMALDGCGLAVPD 182

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
               ++  A   ++   L++ E +L + G+  P    KK++  L  +F R +L  EE+ +
Sbjct: 183 GTPARHL-ADAVQVAGMLEHWEQALTQIGFLDPA-APKKLMPRLQQLFNRAQLAPEEIHI 240

Query: 239 LRGIVSTLDKFSRQSSRR 256
           LRGI   +   ++ + +R
Sbjct: 241 LRGIAKAIIATAQANRQR 258


>gi|148642454|ref|YP_001272967.1| rRNA methylase [Methanobrevibacter smithii ATCC 35061]
 gi|148551471|gb|ABQ86599.1| rRNA methylase, SpoU family [Methanobrevibacter smithii ATCC 35061]
          Length = 301

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 12/249 (4%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L N      I+ V+ +   NIG +AR M NF L  L L+NP    P  +A   + +   
Sbjct: 62  ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 119

Query: 67  VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++D+ +++  L E      + F  A+T     ++     P      L + I +     I+
Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPE-NLGKNINTNNKTAIL 178

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GLTNEEI   +  +S P +P +P LNIS A  ++ +E  +N      + ++E  
Sbjct: 179 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 238

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
               +  L    D ++      G   P  KKK  L    +I  R  +   E   L+GI+ 
Sbjct: 239 AIEKEYVLKDMYDLID------GLDIPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 292

Query: 245 TLD-KFSRQ 252
            L  K  +Q
Sbjct: 293 RLKMKMGKQ 301


>gi|261349415|ref|ZP_05974832.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
           smithii DSM 2374]
 gi|288861777|gb|EFC94075.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
           smithii DSM 2374]
          Length = 301

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 12/249 (4%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L N      I+ V+ +   NIG +AR M NF L  L L+NP    P  +A   + +   
Sbjct: 62  ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 119

Query: 67  VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++D+ +++  L E      + F  A+T     ++     P      L + I +     I+
Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPE-NLGKNINTNNKTAIL 178

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GLTNEEI   +  +S P +P +P LNIS A  ++ +E  +N      + ++E  
Sbjct: 179 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 238

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
               +  L    D ++      G   P  KKK  L    +I  R  +   E   L+GI+ 
Sbjct: 239 AIEKEYVLKDMYDLID------GLDIPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 292

Query: 245 TLD-KFSRQ 252
            L  K  +Q
Sbjct: 293 RLKMKMGKQ 301


>gi|222446047|ref|ZP_03608562.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435612|gb|EEE42777.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
           DSM 2375]
          Length = 272

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 12/249 (4%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L N      I+ V+ +   NIG +AR M NF L  L L+NP    P  +A   + +   
Sbjct: 33  ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 90

Query: 67  VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++D+ +++  L E      + F  A+T     ++     P      L + I +     I+
Sbjct: 91  IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPE-NLGKNINTNNKTAIL 149

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GLTNEEI   +  +S P +P +P LNIS A  ++ +E  +N      + ++E  
Sbjct: 150 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 209

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
               +  L    D ++      G   P  KKK  L    +I  R  +   E   L+GI+ 
Sbjct: 210 AIEKEYVLKDMYDLID------GLDIPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 263

Query: 245 TLD-KFSRQ 252
            L  K  +Q
Sbjct: 264 RLKMKMGKQ 272


>gi|15677213|ref|NP_274366.1| putative RNA methylase [Neisseria meningitidis MC58]
 gi|7226592|gb|AAF41722.1| putative RNA methylase [Neisseria meningitidis MC58]
 gi|261392376|emb|CAX49916.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
 gi|308389465|gb|ADO31785.1| putative RNA methylase; SpoU family [Neisseria meningitidis
           alpha710]
 gi|316984154|gb|EFV63132.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Neisseria meningitidis H44/76]
 gi|319410611|emb|CBY90980.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
           2594]
 gi|325128461|gb|EGC51342.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           N1568]
 gi|325130415|gb|EGC53179.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           OX99.30304]
 gi|325132458|gb|EGC55151.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M6190]
 gi|325134417|gb|EGC57062.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M13399]
 gi|325136150|gb|EGC58758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M0579]
 gi|325138232|gb|EGC60801.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           ES14902]
 gi|325140433|gb|EGC62954.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           CU385]
 gi|325142543|gb|EGC64943.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           961-5945]
 gi|325144517|gb|EGC66816.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240013]
 gi|325198493|gb|ADY93949.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           G2136]
 gi|325200032|gb|ADY95487.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           H44/76]
 gi|325201943|gb|ADY97397.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240149]
 gi|325205885|gb|ADZ01338.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M04-240196]
 gi|325208306|gb|ADZ03758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           NZ-05/33]
          Length = 271

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 61  VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|121635055|ref|YP_975300.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
 gi|161870219|ref|YP_001599389.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
 gi|218768365|ref|YP_002342877.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
 gi|120866761|emb|CAM10514.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
 gi|121052373|emb|CAM08705.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
 gi|161595772|gb|ABX73432.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
          Length = 292

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 22  MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 81

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 82  VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 140

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 141 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 200

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 201 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 258

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 259 RMQSLFGRANTQTEDIDILRGFFNTV 284


>gi|213613094|ref|ZP_03370920.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 160

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 6/153 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +E+   +  ++   NP + SLN++ AV ++ +E
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYE 155


>gi|76802521|ref|YP_327529.1| tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160]
 gi|76558386|emb|CAI49977.1| probable tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM
           2160]
          Length = 264

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 10/232 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRV 73
            + +V  +   N+G +AR+M NF L++L LV+P +  P  +A   + +A  D + ++  V
Sbjct: 5   AVAVVGAETPGNVGTIARSMKNFGLSELYLVDPPELDPDGEAYGFAGHAREDVLPNATEV 64

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAP-KEAAIVLNERIFSGQNVGIIFGRERWG 131
            FS L E     + +  T   N +  K V  P  E A + +E      +V I+FGRER G
Sbjct: 65  EFSYLTE---QFYTVACTATTNEDATKHVRYPFIEPAALSDELAGLDADVCIVFGRERVG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTN+E+A  + I S P +  +P LN++QA  ++++E  E ++  + ++ K+ +  A + E
Sbjct: 122 LTNDELAQLDRICSIPADGDYPVLNLAQAATIVLYELRELTVEET-QHPKQAHERADEHE 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +    +     L E G+  P EK  K       +  R      E   LRG++
Sbjct: 181 IEGLHETFSEYLHEVGH--PEEKIPKTERLFRRLAGRASPTGREARTLRGVL 230


>gi|254670560|emb|CBA06425.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           alpha153]
          Length = 271

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 61  VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQT-GSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLIR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|33861612|ref|NP_893173.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634189|emb|CAE19515.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 247

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G +AR   NF++ +LR+V+P+    S +A+  +      ID+ ++F++
Sbjct: 10  VVLVEPNGPLNVGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGYRYIDNCKIFNS 69

Query: 77  LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +++AI D   + AT  R + +N     +P++ +  ++  +    N+GI+FGRE  GL+N 
Sbjct: 70  IEQAIFDCDLVIATFGRIDLSNDIECESPEDISKWISSFV-EINNLGILFGREDRGLSNN 128

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  ++ I++   +  +PSLN+S AV ++++E  ++S  + +K+++  +  ++K    SF
Sbjct: 129 ELLFAHKILNIKTSQNYPSLNLSHAVSIILYELNKSSKNNDKKDLQVLDLASSKQIYESF 188

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
            +  E+ L + GY        K +       ++ +    ++ +LRGIV  ++ F   S  
Sbjct: 189 KEIEEM-LIKTGYLLEHTANSK-ISKFKKFLLKAKTSSHDINVLRGIVHQINWFLNNSKG 246

Query: 256 R 256
           +
Sbjct: 247 K 247


>gi|121604287|ref|YP_981616.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
           CJ2]
 gi|120593256|gb|ABM36695.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
           CJ2]
          Length = 311

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 22/252 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73
           IL++     N+G  ARAM       L LV PR  W +    E+    ++ A  V+++ R+
Sbjct: 42  ILINTSHAGNVGATARAMKTMGFDDLVLVAPR--WANVLRREETIQRASGALDVLNNARI 99

Query: 74  FSNLKEAIADLHFIYAT--TARN--------RNNFKSVLAPKEAAIV--LNERIFSGQ-- 119
              L EA+  +  + AT  T R+        R +F  +L   EA +   L   +   Q  
Sbjct: 100 VETLDEALDGMAHLCATAMTPRDFGPPTRAPRAHFAELLGRSEALLKQELGTPVHPAQRP 159

Query: 120 -NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +V  +FG ER+G+ NE++   +  +S P +P F SLN+  AV L+ ++  E       +
Sbjct: 160 DSVAFLFGSERFGMQNEDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWREALGGFGIQ 219

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
              E+   A    +   L + E +L + G+  P    KK++  L  +F R +L  EE+ +
Sbjct: 220 AAIEEPRLADAAAVSGMLKHWEEALVDIGFLDPA-SPKKLMPRLNQLFNRAQLSPEEIHI 278

Query: 239 LRGIVSTLDKFS 250
           LRG+   + + +
Sbjct: 279 LRGVAKAMMRHA 290


>gi|88602300|ref|YP_502478.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
           JF-1]
 gi|88187762|gb|ABD40759.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
           JF-1]
          Length = 251

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 84/159 (52%), Gaps = 17/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G  AR M NF  T L L+NP       K R+S  +AD V++   V + 
Sbjct: 6   IVLVEPLYEGNVGFAARVMKNFGFTDLILINPCTIGNEAKIRAS--HADDVLEHATVMT- 62

Query: 77  LKEAIADLHFIYATTAR--------NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           L E     H + ATT           R  F S   PKE   ++  R   G  + I+FGRE
Sbjct: 63  LDEVFRTSHRVIATTGSLSYSACHPTRMPFYS---PKEIRDLI--RDLDG-TISILFGRE 116

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            WGL+NEE+  ++ I + P +PL+P +N+S AV ++ +E
Sbjct: 117 NWGLSNEEVRRADIICTIPTSPLYPIINLSHAVGVICYE 155


>gi|241758643|ref|ZP_04756757.1| SpoU methylase family protein [Neisseria flavescens SK114]
 gi|241321154|gb|EER57350.1| SpoU methylase family protein [Neisseria flavescens SK114]
          Length = 295

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 25  MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLNKLTIVAPNLMATPMTENPP 84

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 85  VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 143

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 144 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 203

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 204 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 261

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 262 RMQSLFGRANTQTEDIDILRGFFNTV 287


>gi|313126187|ref|YP_004036457.1| RNA methyltransferase, trmh family, group 1 [Halogeometricum
           borinquense DSM 11551]
 gi|312292552|gb|ADQ67012.1| RNA methyltransferase, TrmH family, group 1 [Halogeometricum
           borinquense DSM 11551]
          Length = 249

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 22/236 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIADL 84
           N+G +ARAM NF LT L+LVNP    P  +A   + +A  D + ++  V     E + + 
Sbjct: 19  NVGTIARAMKNFGLTDLKLVNPPPLEPDGEAYGFAGHAREDVLPNADEV--TFDEVVEEY 76

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIALSNAI 143
           H +  T   N ++ K V  P +  + + E + + +    ++FGRE  GL N+E+A  + I
Sbjct: 77  HTVATTAITNEDSRKHVRFPYKTPVEVRESLETVETKTALVFGREGRGLNNDELARLDEI 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELLSFLDYLEIS 202
            S P +  +P LN+ QA  ++++E    S+   E  + + +   AT+ E+  F D  E  
Sbjct: 137 CSIPASDDYPVLNLGQAATILMYEL--RSLTVDETQLPDVERERATESEIERFYDNFENF 194

Query: 203 L---EERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
           L   E R + RP  K  +M+  L     R      EV  L G+      F R ++R
Sbjct: 195 LEHAEHRDHKRP--KTMRMIRRLIG---RAHPTDREVHTLTGL------FRRATNR 239


>gi|124028494|ref|YP_001013814.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
 gi|123979188|gb|ABM81469.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
          Length = 239

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 101/181 (55%), Gaps = 14/181 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++ V+ ++  N+G +AR   NF + +  LV+P     S +AR  +AN   ++D V V  
Sbjct: 12  VVVGVEGEI--NLGFIARLAANFAIDEFYLVSPVASPESSEARRFAANGVYMLDRVIVVD 69

Query: 76  NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +L+EA+  +     T+A+     +  +  + P+E A  +  R    ++V ++FGRE  GL
Sbjct: 70  SLEEALKGVDLAVCTSAKIGQASDVLRHAVTPREFAEEIAPRY---ESVAVVFGRESVGL 126

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           T +E+A  + ++  P NP +P LN+S AV ++++E     + ++ +  K+ + PA +GE 
Sbjct: 127 TRDELAKCHLLVHIPANPNYPVLNLSHAVAILLYE-----LYNTRRGEKQLHEPA-RGET 180

Query: 193 L 193
           L
Sbjct: 181 L 181


>gi|70606436|ref|YP_255306.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68567084|gb|AAY80013.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 235

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 95/181 (52%), Gaps = 12/181 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++V+P+   N+G +AR + NF + +  +VNP+    +E  + S+  ++ +   +++ +N
Sbjct: 5   LVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKCDI-NEAIKFSAKGSEVIEKMMKITNN 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +AI D+    AT++    + K  L  K    +  ER+   + V  IFGRE  GLT EE
Sbjct: 64  FDDAIRDVDLKIATSSIA--DIKGDLLRKSIRPIDLERLIKDKKVAFIFGRESVGLTREE 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           IA S+ ++  P NP +P LN+S AV ++++E   N         ++   P    E +  +
Sbjct: 122 IAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRN---------RDNKVPTVSSEPIKLI 172

Query: 197 D 197
           D
Sbjct: 173 D 173


>gi|254173135|ref|ZP_04879808.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
 gi|214032544|gb|EEB73373.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
          Length = 233

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 23/195 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   NIGM+AR M NF  ++L LVNP     +E++ + + +A  V++   +   
Sbjct: 4   LVLVEPEGPANIGMIARTMKNFGFSRLVLVNPNL---TEESYAYAVHATDVLERAVIVDT 60

Query: 77  LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             EA+        TT +    F   ++ L P E    LN   ++G+ VG+ FGRE  GL 
Sbjct: 61  FDEALGLFDLTVGTTGKPGKRFIPYRAPLYPWELRETLNG--YTGE-VGLFFGRESIGLK 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---- 189
           N+E+   + I++ P +  +P +N++QAV ++++E    S    E +V E   PAT+    
Sbjct: 118 NDELERLDLIVTIPTSDAYPVMNLAQAVAVILYEL---SKAKPEPSV-EALKPATRDEKE 173

Query: 190 ------GELLSFLDY 198
                  ELL+ L+Y
Sbjct: 174 ALVRVWAELLNVLNY 188


>gi|257076123|ref|ZP_05570484.1| rRNA methylase [Ferroplasma acidarmanus fer1]
          Length = 236

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 121/235 (51%), Gaps = 24/235 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFS 75
           ++LV+P+   NIG VAR+M N  ++ LR+V      P E +A   S +   ++D+ ++F+
Sbjct: 10  VVLVEPKYQGNIGAVARSMANSGISDLRIVKT----PIETEAIYRSMHGRYILDNAKIFN 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +LKEA++    I  T+  +++  K    P       +    +GQ V ++FGRE  GL  E
Sbjct: 66  SLKEAVSGFEIIAGTSDISKSGEKFRRVPTGPEEFWSTNGLTGQKVALVFGREDNGLNYE 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-----NSIVSSEKNVKEQ-NTPATK 189
           E+ + N  +    NP +P  N+S AV ++++E ++     N+ ++ +   +++ +T A +
Sbjct: 126 ELGMCNFFLKIIGNPEYPVYNLSHAVAIILYEMIKANYSGNATITHDLIGRDKIDTLAGR 185

Query: 190 -GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
             ELL+ +DY E  ++             +++ L  I  R  +   E F + GI+
Sbjct: 186 LEELLAKIDYNEQEID------------TLMNMLNRIIARANITDSEFFKIMGIM 228


>gi|113477325|ref|YP_723386.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168373|gb|ABG52913.1| RNA methyltransferase, TrmH family, group 1 [Trichodesmium
           erythraeum IMS101]
          Length = 248

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+ +   N+G VAR M N  L  L LVNP+      +AR  + +   +++   +   
Sbjct: 11  IVLVEAKGPLNVGSVARIMKNMGLNHLVLVNPQCDPYGAEARQMAVHGVEILEKATIVPT 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+   H   ATT+ +R+    +  PK +   L      G +  +IFGRE  GLTN E
Sbjct: 71  LPEALKGCHRAIATTSLDRSLPTHLENPKHSLPWL-----LGYSGALIFGREDRGLTNVE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGELL 193
           +  +   +    +  +PSLN++QAV +  +E  +  + + E N + Q   +  A+   L 
Sbjct: 126 LNYAQRFVRIQSDDSYPSLNLAQAVAICCYELYQAQL-NQENNPQSQANRDLEASLDVLE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           ++   LE  L + GY  P     +M +    ++ R     +EV +LRG++  ++
Sbjct: 185 AYYQDLETILLKIGYLYPHTASSRM-EKFRRLYNRAYPSTQEVAMLRGMIRQIN 237


>gi|89901662|ref|YP_524133.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
 gi|89346399|gb|ABD70602.1| RNA methyltransferase TrmH, group 1 [Rhodoferax ferrireducens T118]
          Length = 286

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 39/265 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73
           IL++     N+G  ARAM     T L LV PR  W +    E+    ++ A  V+ + R+
Sbjct: 6   ILINTSHAGNVGAAARAMKTMGFTDLVLVAPR--WANVLRREETIQRASGALDVLKNARI 63

Query: 74  FSNLKEAIADLHFIYAT----------TARNRNNF----------------------KSV 101
              L EA+  +  + AT          TA  R +F                      K+ 
Sbjct: 64  VDTLDEALEGITHLCATAMTPRDFGPPTATPREHFELLLNKERLTHIPRGLEADLAYKNE 123

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           + P+ + +V        + +G +FG ER+G+ NE++   +  +S P +P F SLN+  AV
Sbjct: 124 ILPETSELVQAAVAAPERGMGFLFGCERFGMRNEDVYRCHVALSIPSDPQFGSLNLGAAV 183

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E          ++   +   A   ++   L +LE SL+  G+  P +  KK++  
Sbjct: 184 QVIAYEWRLALGAFPVQSATLEPVLADAAQVAGMLGHLEQSLQAIGFLDP-QAPKKLMPR 242

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           L  +F R  + +EEV +LRGI   +
Sbjct: 243 LNQLFNRAGVTQEEVHILRGIAKAM 267


>gi|119509165|ref|ZP_01628316.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
 gi|119466331|gb|EAW47217.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
          Length = 245

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 4/231 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G +AR M NF L  L LVNP+    +E+A   + +A  +++S  + + 
Sbjct: 8   IVLVEPAGPLNVGSIARVMKNFGLHNLVLVNPQCDPVAEEALKMAVHAKEILESAVLVTT 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+       ATTAR R+    +  P+ A   L E     +   +IFGRE  GL+NEE
Sbjct: 68  LPEALQGCVRAIATTARVRDWETPLENPRTALPWLLES--PSEPAALIFGREDRGLSNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +  +   +  P +  + SLN++ AV +  +E  + +   +          A+   + ++ 
Sbjct: 126 LNYAQRFVRIPSSENYSSLNLASAVGICCYELAQYTAPPTTPPPSPTEL-ASLDIVETYY 184

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
             LE  L + GY  P     +M      ++ R  L  +EV +LRGI+  ++
Sbjct: 185 QQLESLLLDIGYLYPHTATSRM-AKFRQLYNRAHLQTKEVAMLRGILRQIE 234


>gi|55376959|ref|YP_134809.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55229684|gb|AAV45103.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 241

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 16/233 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFS 75
           + +VD +   N+G +AR+M NF L++L LV+P +  P  +A   +  A D ++ + R  +
Sbjct: 4   VAVVDAETPGNVGTIARSMKNFGLSELLLVDPPELDPDGEAYGFAGQARDDILPNARTVT 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTN 134
              + + + H +  T   N +    V  P      L + +   + ++ ++FGRER GL+N
Sbjct: 64  -FDDIVENYHTVACTATTNEDPANHVRYPATTPADLADSLQDVEGDICVVFGRERVGLSN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-----NTPATK 189
           +E+A  + I S P +  +P LN+ QA  ++++E  E ++   E    EQ      TPA +
Sbjct: 123 DELARLDVICSIPASASYPVLNLGQAATIVLYELRELTV--DETQHPEQLHTLAETPAVE 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           G    F  +L           P EK+ K       +  R +    E   LRG+
Sbjct: 181 GLHEEFDRFL------GAIGHPEEKQHKARRLFRRVLGRAQPTGRETKTLRGL 227


>gi|284799663|ref|ZP_05984511.2| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
           NJ9703]
 gi|284797648|gb|EFC52995.1| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
           NJ9703]
          Length = 304

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 34  MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 94  VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 152

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 153 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 212

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 213 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESLMNDIGFFN-RRNGERLMR 270

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 271 RMQSLFGRANTQTEDIDILRGFFNTV 296


>gi|108759067|ref|YP_630311.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108462947|gb|ABF88132.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 243

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L   +  +N+G VAR M NF  ++L L  P      E A   +  +D V+  + V S
Sbjct: 8   TVVLHQTRSTDNLGAVARIMANFGYSRLILSEPVL-KSIEGAERLAVKSDFVLRGMEVTS 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L EA+ D  +   TT+R +   ++VL P+EA   L E    G+ V ++FG E+ G+++E
Sbjct: 67  DLGEALKDCVYAVGTTSRTQLKGRTVLTPEEAMQRLAEESVRGR-VALVFGGEQRGMSDE 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++A    +++ P + + PS+N++Q+  ++++ C    +  +      +  P  K   L  
Sbjct: 126 DLARCTDVLAIPTSAVQPSMNLAQSSAVLLYLCHRQGLTPT---AAVEEAPGAKLGTLGA 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
           L      +  R  F   +  + +L++L    +R  L + E  L
Sbjct: 183 LAKRMRDVMLRAEFLNPQAPQHVLNELEQTLMRARLTQREAEL 225


>gi|269213493|ref|ZP_05982089.2| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
           14685]
 gi|269146253|gb|EEZ72671.1| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
           14685]
          Length = 330

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 60  MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 119

Query: 50  ---------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
                       P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 120 VFDPEHPQSFKLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 178

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QA
Sbjct: 179 LQTPRDLVPELLQAANRGEKVTLVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQA 238

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 239 VQVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 296

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 297 RMQSLFGRANTQTEDIDILRGFFNTV 322


>gi|323474724|gb|ADX85330.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           REY15A]
 gi|323477452|gb|ADX82690.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           HVE10/4]
          Length = 237

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 10/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   NIG VAR   NF++ +L +VNPR      +A   SA     ++  ++ ++
Sbjct: 4   VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRAN--VSEAFKFSAGGKEFLEKAKIVNS 61

Query: 77  LKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             EAI D+    AT++   NN    +  + P E        +  G+ V ++FGRE  GLT
Sbjct: 62  FDEAINDVDIKIATSSIADNNGDILRKSIRPWELL-----SLIQGKKVALVFGRESVGLT 116

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            EEI   + ++  P NP +P LN+S AV ++++E  +N
Sbjct: 117 REEIFRCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKN 154


>gi|48477401|ref|YP_023107.1| rRNA methylase [Picrophilus torridus DSM 9790]
 gi|48430049|gb|AAT42914.1| rRNA methylase [Picrophilus torridus DSM 9790]
          Length = 235

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 8/196 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++LV+P+   NIG VAR+M N  LT LR+V  P D    E AR  + +   ++D+ R+++
Sbjct: 9   VVLVEPKYQGNIGAVARSMANSGLTDLRIVKTPID----EDARRRAMHGLYILDNARIYN 64

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +  +A++    I  T+  +++  K    P       +    +G+ V ++FGRE  GL N 
Sbjct: 65  SFDDAVSGFDIIAGTSDVSKSGNKFSRVPVSPEYFWDNYGLNGKRVALVFGREDNGLNNY 124

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E++  N  I    NP +P  N+S AV ++++E ++        N+ E N   +       
Sbjct: 125 ELSKCNFFIKIIGNPEYPVYNLSHAVAIILYEMIKRVY---SGNIIESNNYISPEHFNIM 181

Query: 196 LDYLEISLEERGYFRP 211
           ++  E  L   GY +P
Sbjct: 182 INRFEELLNLLGYEKP 197


>gi|227827666|ref|YP_002829446.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.14.25]
 gi|229584870|ref|YP_002843372.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.27]
 gi|238619837|ref|YP_002914663.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.4]
 gi|227459462|gb|ACP38148.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.14.25]
 gi|228019920|gb|ACP55327.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.27]
 gi|238380907|gb|ACR41995.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.4]
          Length = 237

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 10/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   NIG VAR   NF++ +L +VNPR      +A   SA     ++  ++ ++
Sbjct: 4   VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRAN--VSEAFKFSAGGKEFLEKAKIVNS 61

Query: 77  LKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             EAI D+    AT++   NN    +  + P E        +  G+ V ++FGRE  GLT
Sbjct: 62  FDEAINDVDIKIATSSIADNNGDILRKSIRPWELL-----SLIQGKKVALVFGRESVGLT 116

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            EEI   + ++  P NP +P LN+S AV ++++E  +N
Sbjct: 117 REEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKN 154


>gi|206889201|ref|YP_002249465.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741139|gb|ACI20196.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 252

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 4/165 (2%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L +S K  V  +LV+P+   NIG  ARA+ N   T L L+NP      E    + A+ 
Sbjct: 2   PTLNHSWKENVYFVLVEPKESGNIGASARAIKNMGFTNLTLINPVP-LQDEAYWMAWASK 60

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           D V++  ++F  L E++ D   I  TT R      +++  K+    + E +     V I+
Sbjct: 61  D-VLEKAQIFRELDESLKDKALIIGTTRRRGAKRGAIIDVKDGVKRVYE-VAQNNKVAIL 118

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           FGRE  GL NEE+     +I+ P + L PSLN++QAVL++ +E M
Sbjct: 119 FGREDKGLFNEEVEKCGYLITIPTSLLQPSLNLAQAVLIVAYELM 163


>gi|296314460|ref|ZP_06864401.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
           polysaccharea ATCC 43768]
 gi|296838750|gb|EFH22688.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
           polysaccharea ATCC 43768]
          Length = 271

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 23/250 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--------------------DGWPSEK 56
           IIL       NIG  ARAM    L +L +V P                        P E 
Sbjct: 17  IILTRTGHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPPVFDPEHPQSFELPEES 76

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
              +S  AD V+ +  + + L EA+AD     A T+R R     +  P++    L +   
Sbjct: 77  FILASGAAD-VLHNAEIVATLNEALADTAIACALTSRRREITAPLQTPRDLVPELLQTAN 135

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV ++ +E    +  S 
Sbjct: 136 RGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQT-GSP 194

Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
             ++++++  AT  ++   + ++E  + + G+F      ++++  + S+F R     E++
Sbjct: 195 MTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRRMQSLFGRANTQTEDI 253

Query: 237 FLLRGIVSTL 246
            +LRG  +T+
Sbjct: 254 DILRGFFNTV 263


>gi|159899747|ref|YP_001545994.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892786|gb|ABX05866.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 241

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           + +L +PQ   NIG   RA+ N    +LRLV P   +  E+    +  +  +++ +  F+
Sbjct: 10  ITVLHEPQREVNIGSTVRALLNTGFQRLRLVQPV-AYSIERLDDMAHRSGPLVEQIETFA 68

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L EA+A++ ++   + R+R   ++V  P+ A  +    + +   V  +FGRE  GL N 
Sbjct: 69  SLGEALANVSYVVGFSGRSRGERQAVSLPEFAPTL--TALAATAPVAFVFGREDRGLDNA 126

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I   + +IS PV+P +PSLN++ AVLL ++
Sbjct: 127 AIEQCSQLISIPVDPSYPSLNLADAVLLALY 157


>gi|116754672|ref|YP_843790.1| RNA methyltransferase [Methanosaeta thermophila PT]
 gi|116666123|gb|ABK15150.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta
           thermophila PT]
          Length = 243

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 117/240 (48%), Gaps = 31/240 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   N+G VAR+M NF    L LV P D        + +A+A  ++ S +    
Sbjct: 5   VVLVEPRYEGNVGAVARSMKNFGFNDLVLVRPCD--IGSFGMAMAAHAKDILQSAKSVDR 62

Query: 77  LKEAIADLHFIYATT----ARNRNNFK-----SVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           L++A+  ++ I  TT    +R+ ++ +       L P E A  L ++      V ++ GR
Sbjct: 63  LEDALEGVNLIVGTTGKRLSRDHHHLRLHLRVPFLTPSELAERLRDK---DGTVALLLGR 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQ 183
           E WGLTN+E+   + ++S P +  +P +N+S A  ++++E  +      I  + +++ E+
Sbjct: 120 EDWGLTNDELMACDVLVSIPTSDEYPVMNLSHAATVLLYELGQVDSTLEIRLAGRDMLER 179

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              +T   LL  ++Y            P  K + ++  L  IF R EL   E   L G++
Sbjct: 180 IYESTD-HLLRIINY------------PEHKIRYVVLMLRRIFGRAELTEREANTLLGVI 226


>gi|330814240|ref|YP_004358479.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487335|gb|AEA81740.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 108

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 61/97 (62%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S K   I+L+ PQ+GENIG  ARAM NF L++L +VNP++ WP+ KA  +S  A  +I  
Sbjct: 2   SLKNISIVLIKPQIGENIGATARAMKNFGLSKLAIVNPKEKWPNTKAVYTSVKAVDIIHK 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
            +VF +  +A+     ++ATTAR RN  K + +  EA
Sbjct: 62  AKVFKSTSDALRKSDIVFATTARIRNLNKKIYSLDEA 98


>gi|170076970|ref|YP_001733608.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884639|gb|ACA98352.1| rRNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7002]
          Length = 250

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 12/237 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+P    N+G +AR M N  L QL LVNP      ++A   + +    ++   V  +
Sbjct: 9   IVVVEPAGALNLGSIARVMKNMGLGQLFLVNPHCNHLGQEAFLMAVHGREFLERAVVVPD 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+       ATT   R+    V  PK A   L   +   Q   +IFGRE  GL+N E
Sbjct: 69  LTTALTGCKKAIATTGLQRSLPMPVETPKAA---LPWFLEDDQPSALIFGREDHGLSNSE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP----ATKG 190
           +  +  ++  P    + SLN++QAV +  +E    S+ + ++    KE+  P    A   
Sbjct: 126 LNQAQRLVCIPTGDAYTSLNLAQAVAVCSYEL--RSLATEQQGFPPKEKAAPLPDLADLS 183

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           EL  +  +LE  L + G+  P     +M +   +++ R      EV +LRGI+  ++
Sbjct: 184 ELEGYYQHLERVLLQVGFLYPHTSTSRM-ETFRNLYHRASPSSREVAMLRGILRQVE 239


>gi|283853704|ref|ZP_06370934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
 gi|283570914|gb|EFC18944.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
          Length = 250

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 2/243 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+L  P+  EN+G  ARA  N  +++L LV+P    P      +++    ++D++ +  
Sbjct: 6   TIVLFRPKFSENVGAAARACANMGVSRLVLVDPPAFDPDRARPMATSKGGLLLDTLEIVP 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+A    +Y TTAR     K  + P EAA  +   + +G  V ++FG E  GL+N+
Sbjct: 66  TLAAAVAGAEAVYGTTARLGGWRKGEVTPAEAADGICRTLGAGGGVAVVFGPEDAGLSNQ 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLS 194
           E  L   +++ P      SLN++QAVL++ +E  +  S ++ +   +  +  AT  E  S
Sbjct: 126 ETQLCGRLVNIPTAGEATSLNLAQAVLVVCYEVFKAASGLAGDVAGQTPSRAATHAERES 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
               L  +L    + +       ML  +     R  L R+E  LL G+   +     Q  
Sbjct: 186 LFAALRETLLAIDFLKADNPDYWML-PVRRFIDRVGLRRQEFNLLMGVCRQVKWAVGQGG 244

Query: 255 RRN 257
           +++
Sbjct: 245 KKS 247


>gi|297570545|ref|YP_003691889.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926460|gb|ADH87270.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 304

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P+  ENIG  AR   N  +  L +V  R+    +  ++++  A  +ID +   + 
Sbjct: 19  IVLKNPKFEENIGSAARIAMNMGIPSLIVVGEREYQRDKMLKTATHKAAALIDRLERHAT 78

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EA+A    + AT+AR     + +  P   A+       +   V ++FG E  GLTNE+
Sbjct: 79  VAEALAPFGRVIATSARQGRQ-RGMCPPPRTAMQAALPYLAANRVALLFGPEDRGLTNED 137

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194
           + L + + + P    F SLN++QAV ++ +E +  +   ++        P  AT  EL +
Sbjct: 138 LYLCHQLTTIPTAD-FSSLNLAQAVAVLCYE-LHTAAHEAQTGRGPVVRPALATVHELEA 195

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              ++E  L++ G+ RP E     + ++ S+  R  L  +E  ++RG  
Sbjct: 196 MYGHVEQVLQKVGFLRP-EDSSYWMKNIRSLLGRVGLRAKEARVVRGFC 243


>gi|94969144|ref|YP_591192.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551194|gb|ABF41118.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 239

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 10/177 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  +   NIG  ARAM NF +  LR+VNP D  PS +   S+  A+ ++ +   F +
Sbjct: 11  VVLVATRNPLNIGAAARAMSNFGVMHLRVVNPFD--PSFREAQSAVGAEELLRNAEQFGS 68

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + EA+AD   +  TTA R+R     + A  +AA ++ E   SG+ V ++FG E+ GL+NE
Sbjct: 69  VAEAVADCSLVVGTTAARDRELQHPMHALTQAAPLIRE--HSGK-VAVLFGSEKRGLSNE 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           +++  + ++  P      S+N+ QAV + ++E    S  S+  +++++   AT G+L
Sbjct: 126 DLSHCHWLMHIPTRTEHLSMNLGQAVAVCMYEIARTS--STIADMEQRR--ATAGDL 178


>gi|126178718|ref|YP_001046683.1| RNA methyltransferase [Methanoculleus marisnigri JR1]
 gi|125861512|gb|ABN56701.1| RNA methyltransferase, TrmH family, group 1 [Methanoculleus
           marisnigri JR1]
          Length = 232

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++P    N+G  AR M NF  T+L LVNP         R+S A  D + D+ R+   
Sbjct: 6   IVLIEPLYEGNVGFTARVMKNFGFTRLVLVNPCTLGDDAIMRASHAR-DVLEDARRM--T 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVL-----APKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +K+   +  F+ ATT     +  + +     AP E   ++ +    G  V I+FGRE WG
Sbjct: 63  IKKVYNEFDFVVATTGEVSKSVCTPMRMPYYAPAEVREIVGD--IDG-TVAILFGRENWG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L N E+A +N I + P + ++P LN+S AV ++ +E
Sbjct: 120 LANTELARANLICTIPTSEIYPILNLSHAVGILCYE 155


>gi|283788579|ref|YP_003368444.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282952033|emb|CBG91762.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 206

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 5/171 (2%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M      +LR+V+  +       R  +  +  +ID++ VF  L +A+ D+ F  ATTAR+
Sbjct: 1   MKTMGFARLRIVDS-EAHREPATRWVAHGSGDIIDNIEVFPTLFDALQDVDFTIATTARS 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R  F     P E   +L E+     +  ++FGRE  GLTNEE+AL++ +   P+   +PS
Sbjct: 60  RAKFHYYATPAELVPLLEEKAGWMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPS 119

Query: 155 LNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATKGELLSFLDYLEIS 202
           LN+ QAV++  ++ + + +   +KN+    E    A +  ++  L  L+++
Sbjct: 120 LNLGQAVMVYCYQ-LASLMQQPDKNIDISDEFQLRALRSRVMRLLSTLDVA 169


>gi|326576005|gb|EGE25928.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
 gi|326576417|gb|EGE26326.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
          Length = 294

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I++V   L  NIG  ARA+    L  L +VNPR   P  + + +++A A  ++D   +  
Sbjct: 15  IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV--------------------LNERI 115
           ++K AI D   I+A +AR+R   + VL P  AA V                    +N+  
Sbjct: 73  DIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132

Query: 116 FSGQN----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
               N    + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+
Sbjct: 133 DDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182


>gi|303257835|ref|ZP_07343845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Burkholderiales bacterium 1_1_47]
 gi|330998743|ref|ZP_08322471.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859438|gb|EFL82519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Burkholderiales bacterium 1_1_47]
 gi|329576240|gb|EGG57756.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
           excrementihominis YIT 11859]
          Length = 265

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 14/239 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW----PSEKARSSSANADCVIDSVRV 73
           +LV P    NIG  ARA+      +L +V+PR       P   A S+ A  D + +SV  
Sbjct: 13  VLVSPSHPGNIGSAARAIKTMGFDRLYVVSPRHPEYRTDPDAIAFSTHA-VDVLQNSV-C 70

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERW 130
              L EA+ D+ F  A +  +R  F   LA  + +  + +        + +  +FG ER 
Sbjct: 71  TETLLEALKDVSFACALSGYDRE-FGPPLADLQTSCEMVKTCLEENPQEEIAFVFGTERS 129

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPA 187
           GLTNEE+ L     + P NP   SLN++QAV +  ++    +    + +  +  E   PA
Sbjct: 130 GLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTAYQAQQTLRGRALDAHASRFEGEAPA 189

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +   +    ++LE ++   G   P E+ K M+  L  I  R  L   +V +LRGI + +
Sbjct: 190 SVEAIEGLYEHLEEAMIACGALNP-ERPKLMMPKLKRILSRSGLSVPDVDMLRGICAAI 247


>gi|325204341|gb|ADY99794.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240355]
          Length = 271

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 125/266 (46%), Gaps = 23/266 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P L        IIL       NIG  ARAM    L +L +V              
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 47  --NPRDG----WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
             +P D      P E    +S  AD V+++  + ++L EA+AD     A T+R R     
Sbjct: 61  VFHPDDVQSFVLPEESFILASGAAD-VLENATIAASLDEALADTTIACALTSRRREITAP 119

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +  P++    L +    G+ V ++FG E +GL+ EE    N +++   NP + SLN++QA
Sbjct: 120 LQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQA 179

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLD 220
           V ++ +E    + +    ++++++  AT  ++   + ++E  + + G+F      ++++ 
Sbjct: 180 VQVVCYEIFSQTDMPM-THLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMR 237

Query: 221 DLYSIFIRPELMREEVFLLRGIVSTL 246
            + S+F R     E++ +LRG  +T+
Sbjct: 238 RMQSLFGRANTQTEDIDILRGFFNTV 263


>gi|320100237|ref|YP_004175829.1| tRNA/rRNA methyltransferase SpoU [Desulfurococcus mucosus DSM 2162]
 gi|319752589|gb|ADV64347.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurococcus mucosus DSM
           2162]
          Length = 236

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 5/180 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  +   N+G++AR   NF + +L +V P      ++A + +A     +++  V  +
Sbjct: 4   VVLVGIEGAVNLGVIARTCVNFGVDELYIVKPVASL--DEALNYAAKGRGFLENAVVTDS 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTNE 135
           L EAI  +  I AT+    +    +L          ERIF   ++V I+FGRE  GLT E
Sbjct: 62  LDEAIKGVDMIVATSDEGYSE-SDMLRQAVDLSDFAERIFPRTRSVAILFGRESTGLTRE 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           EI  ++ +++ P NP +P LN+SQAV +++WE  ++  + +  NV  + +    GELLS 
Sbjct: 121 EIGRADILVTIPANPAYPVLNVSQAVAVVLWELWKHRGMEA-VNVPRKASRDLLGELLSL 179


>gi|86157540|ref|YP_464325.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774051|gb|ABC80888.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 269

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 24/264 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANA----------- 64
           ++L  PQ  +N+G  AR M NF L++L +V P   G P     + +A A           
Sbjct: 8   LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAATARDDVLARARRM 67

Query: 65  ----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                 ++D   +  +L+ AI    ++  TT+R     +  L P+  A  L  R   G+ 
Sbjct: 68  ARKASDLLDGAEIHDDLRAAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSAQGE- 125

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++FG ER GL++ E+ L  A+ + P    + S+N++QAV ++ +E    +        
Sbjct: 126 VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVISYEVARAAPPPGAAPA 185

Query: 181 KEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
           +       + PA    + +     +  L   GY  P +  + +L D   +  R +  + E
Sbjct: 186 EAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQRE 244

Query: 236 VFLLRGIVSTLDKFSRQSSRRNNV 259
           V LL G + +L++  R + R +  
Sbjct: 245 VELLLGALRSLERTLRLAPRGDGT 268


>gi|326560770|gb|EGE11137.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
 gi|326574402|gb|EGE24344.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
          Length = 294

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I++V   L  NIG  ARA+    L  L +VNPR   P  + + +++A A  ++D   +  
Sbjct: 15  IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV--------------------LNERI 115
           ++K AI D   I+A +AR+R   + VL P  AA V                    +N+  
Sbjct: 73  DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132

Query: 116 FSGQN----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
               N    + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+
Sbjct: 133 DDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182


>gi|296113398|ref|YP_003627336.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295921092|gb|ADG61443.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326570114|gb|EGE20159.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
          Length = 294

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I++V   L  NIG  ARA+    L  L +VNPR   P  + + +++A A  ++D   +  
Sbjct: 15  IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------------------------L 111
           ++K AI D   I+A +AR+R   + VL P  AA V                         
Sbjct: 73  DIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           ++ + +   + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+
Sbjct: 133 DDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182


>gi|326569633|gb|EGE19685.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
          Length = 294

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I++V   L  NIG  ARA+    L  L +VNPR   P  + + +++A A  ++D   +  
Sbjct: 15  IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV--------------------LNERI 115
           ++K AI D   I+A +AR+R   + VL P  AA V                    +N+  
Sbjct: 73  DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132

Query: 116 FSGQN----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
               N    + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+
Sbjct: 133 DDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182


>gi|326626277|gb|EGE32622.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 203

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
              T LR+V+ +          +  + D +ID++ VF  L +A+ D+ F  ATTA +R  
Sbjct: 1   MGFTDLRIVDSQAHLEPATRWVAHGSGD-IIDNIEVFRTLADALHDVDFTVATTACSRAK 59

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           F    +P E   +L E+    ++  ++FGRE  GLTN+E+AL++ +   P+   +PSLN+
Sbjct: 60  FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119

Query: 158 SQAVLLMVWE 167
            QAV++  ++
Sbjct: 120 GQAVMVYCYQ 129


>gi|163849091|ref|YP_001637135.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222527064|ref|YP_002571535.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163670380|gb|ABY36746.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450943|gb|ACM55209.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 239

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA--NADCVIDSVRV 73
           ++IL  P+   NIG V RAM N     LRLV+P    P + A  S+     D V+ ++ V
Sbjct: 5   IVILHQPRDPRNIGAVVRAMLNTGCHHLRLVDP---CPFDPATISAVAHRPDPVLANLTV 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++L EAIAD+ ++  T+ R           ++ A    +R  S   V I+FG E  GL+
Sbjct: 62  HAHLSEAIADIRYLVGTSDRPHPGLPWRNDVRQWANETRQRAASTGPVAILFGSEGNGLS 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +E+ L   I+  P+   +P LN++QAVLL+++E  +
Sbjct: 122 RDELVLCQEILGLPMASDYPVLNLAQAVLLVLYELQQ 158


>gi|288559911|ref|YP_003423397.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
           M1]
 gi|288542621|gb|ADC46505.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
           M1]
          Length = 263

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++ V+ +   N+G +AR M NF L +L L+NP      E+A   + +A   +++  ++  
Sbjct: 31  VVFVECESPGNVGFLARTMGNFGLNKLVLINP--CTLKEEAYYQATHARDTVENAMIYDT 88

Query: 77  LKEAIAD--LHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + E + D  + FI  +T     ++   +  L P+E A  +N        + I+FGRE  G
Sbjct: 89  VGEFVKDKKIDFIIGSTGAPGGSYNISRIPLKPEELAKSMN----YNDKIAILFGREGNG 144

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           LTN E+ + + I+S P +P +P +NIS A  ++++E  +N
Sbjct: 145 LTNAEVDMCDLIVSIPTDPSYPIMNISHAAAIILYEIFKN 184


>gi|13541410|ref|NP_111098.1| rRNA methylase [Thermoplasma volcanium GSS1]
 gi|14324793|dbj|BAB59720.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 250

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 12/229 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P+   NIG VAR+M N  L++L +V  R   P ++A + S     ++++  +  +
Sbjct: 13  VVLVQPKYQGNIGAVARSMKNSGLSKLIIVGNR---PDDEAFARSMGGRQILENAEIVDS 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+E +     +  T++   +N K     P +      +       V ++FGRE  GL NE
Sbjct: 70  LEEIVHRFTIVAGTSSTASSNLKRFRRLPVDPETFWKQMESQTGKVALVFGREDDGLRNE 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS- 194
           E+ L N  I  P NP +P  N+S AV ++++  M  S V S+    E   P  +  L+S 
Sbjct: 130 ELDLCNYFIYIPGNPDYPVYNLSHAVAIVLY-VMYRSYVPSDMIQHESIKPEHEVLLMSN 188

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
            LD +++S        P  K +     L  I  R  +   E F L GIV
Sbjct: 189 ILDIMKLSR------YPAHKMRNAEVMLRRIIGRSMITEREYFKLMGIV 231


>gi|15897647|ref|NP_342252.1| hypothetical protein SSO0747 [Sulfolobus solfataricus P2]
 gi|284174973|ref|ZP_06388942.1| hypothetical protein Ssol98_09996 [Sulfolobus solfataricus 98/2]
 gi|6015729|emb|CAB57556.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813914|gb|AAK41042.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602416|gb|ACX92019.1| tRNA/rRNA methyltransferase (SpoU) [Sulfolobus solfataricus 98/2]
          Length = 237

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 10/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   NIG VAR   NF + +L +VNPR    SE  R S+   + +++  ++ + 
Sbjct: 4   VVLVEPEGEYNIGFVARLCKNFLVDELYIVNPRANI-SEAFRFSAGGRE-ILEKAKIVNT 61

Query: 77  LKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +AI D+    AT++   NN    +  + P E   ++      G+ + +IFGRE  GLT
Sbjct: 62  FDKAINDVDIKIATSSIADNNGDILRKSIRPWEILPLI-----QGKKIALIFGRESVGLT 116

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            EEI   + ++  P NP +P LN+S AV ++++E  +N
Sbjct: 117 REEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKN 154


>gi|57641905|ref|YP_184383.1| TrmH family tRNA methyltransferase [Thermococcus kodakarensis KOD1]
 gi|3253066|dbj|BAA29043.1| spoU [Pyrococcus sp.]
 gi|57160229|dbj|BAD86159.1| probable tRNA/rRNA methyltransferase, SpoU family [Thermococcus
           kodakarensis KOD1]
          Length = 235

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 104/195 (53%), Gaps = 23/195 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   NIGM+AR M NF  ++L L+NP     +E++ + + +A  V+++  +  +
Sbjct: 4   VVLVEPEGPANIGMIARTMKNFGFSRLVLINPNL---TEESYAYAVHARDVLENALILDS 60

Query: 77  LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++A+    F   TT +    F   ++ L P E   ++ +  + G+ VGI FGRE  GL 
Sbjct: 61  FEKALELFDFTVGTTGKPGKRFIPHRAPLMPWELVGLIKD--YPGE-VGIFFGRESIGLK 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-- 191
           NEE+   +  ++ P +  +P +N++QA  ++++E    S    E  V E   PAT+ E  
Sbjct: 118 NEELDAMDVTLTIPTSEEYPVMNLAQAAAVVLYEL---SKKRPEPYV-EALKPATREEKE 173

Query: 192 --------LLSFLDY 198
                   LL+ LDY
Sbjct: 174 ALVRTWEKLLNTLDY 188


>gi|116748737|ref|YP_845424.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116697801|gb|ABK16989.1| RNA methyltransferase, TrmH family, group 1 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 257

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 10/236 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P   ENIG  AR+  N  + +L +VNP D       + ++  A  V++++ ++ +
Sbjct: 10  IVLNEPHYPENIGAAARSAKNMGIRRLLVVNPLDFDLDRVLKMATHAARDVVEAMEIYDD 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+A    +  TTAR  +  + V  P++ A  L   I       I+FG E  GLTNE+
Sbjct: 70  LRNALAPFRHVVGTTARLGSRRQRVRNPRQMADELVS-ISRENEAAILFGTESSGLTNEQ 128

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194
           +   + +++ P    F S+N++QAV+++ +E     + ++ +   ++  P  A + EL  
Sbjct: 129 LRFCDFLVTIPTAD-FASINLAQAVMIVAYE-----LYTANREEPQRFVPRLAARRELEG 182

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
             D L  +L    +         ML  +   F R  L   EV ++RGI   +D + 
Sbjct: 183 MYDQLRDTLARINFINQDNPDYWML-SVRRFFSRIGLRAGEVKIVRGICRQIDWYC 237


>gi|326559881|gb|EGE10281.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
          Length = 294

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I++V   L  NIG  ARA+    L  L +VNPR   P  + + +++A A  ++D   +  
Sbjct: 15  IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------------------------L 111
           ++K AI D   I+A +AR+R   + VL P  AA V                         
Sbjct: 73  DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           ++ + +   + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+
Sbjct: 133 DDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182


>gi|326559242|gb|EGE09673.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
          Length = 294

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I++V   L  NIG  ARA+    L  L +VNPR   P  + + +++A A  ++D   +  
Sbjct: 15  IVMVGTTLPANIGSAARALHTMGLDDLVVVNPR--LPIDDSSYANAAGAGILLDKACITK 72

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------------------------L 111
           ++K AI D   I+A +AR+R   + VL P  AA V                         
Sbjct: 73  DIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATSLDHMNQSA 132

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           ++ + +   + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+
Sbjct: 133 DDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAI 182


>gi|294495306|ref|YP_003541799.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
           mahii DSM 5219]
 gi|292666305|gb|ADE36154.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
           mahii DSM 5219]
          Length = 231

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 22/238 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G V R+M NF    L LVNP       +AR+ S +A  +++S      
Sbjct: 7   IVLVEPLYQGNVGSVTRSMENFGFDDLVLVNP--CKLEGQARAMSCHARDLLESTPKVDT 64

Query: 77  LKEAIADLHFIYATTA-----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+EAI D   +  T+       +++       P E      E   +   +  +FGRE  G
Sbjct: 65  LEEAIEDTDIVIGTSGIAGIKTDQHIRMPAYTPAEIRDKFRE---TNGKIAFLFGREDNG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            T EE+   + I++ P +  +P +NIS A  + ++E           N+     P  +G 
Sbjct: 122 FTREELKRCDMIMTIPTSEKYPVMNISHAATIAMYEM---------SNLPIGERPIAEGF 172

Query: 192 LLSFL-DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  L D+ E  L +  +  P  K +K    L  IF R EL   EV  LRG++  + +
Sbjct: 173 DLQLLYDHFEQVLADVKH--PTHKMEKTALMLKRIFGRAELTPREVQTLRGVLRDIQR 228


>gi|156936922|ref|YP_001434718.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
 gi|156565906|gb|ABU81311.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
          Length = 228

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 4/151 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   N G + R   NF + ++  V P+     E+  + +AN    +D V+V  +
Sbjct: 5   LVLVEPEGKINFGFILRLCKNFEVDEIVAVRPKFDVRDEEVLTFAANGRDYVDKVKVVDD 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            KEA+  L    +    + +  +  + P E    L E+    + + ++FGRE  GLT EE
Sbjct: 65  YKEALEGLVVCTSAKVSSADPLRDFVLPWE----LKEKFGEPERLTLVFGRESVGLTREE 120

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   +A++  P +P +P +N+S AV +++WE
Sbjct: 121 LKECDALLHVPASPQYPVMNLSHAVAVVLWE 151


>gi|10640325|emb|CAC12139.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 291

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 10/154 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P+   NIG VAR+MWN  L  L ++  R   P ++A + S     ++++  ++ +
Sbjct: 53  IVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENAEIYDD 109

Query: 77  LKEAIADLHFIYATTA---RNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               I+  + I AT++    N  +F+ + L P++    ++++   G  + ++FGRE  GL
Sbjct: 110 FASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQ---GGKIALVFGREDDGL 166

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            NEEI   N  I+ P NP +P  N+S AV ++++
Sbjct: 167 RNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILY 200


>gi|116878435|ref|YP_842169.1| rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM 2380]
 gi|114843071|gb|ABI81848.1| predicted rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM
           2380]
          Length = 166

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+PQ   NIGMVARAM NF +++LRLVNP   +   +AR  +  A  ++   RVF +
Sbjct: 11  VILVEPQSPGNIGMVARAMGNFGVSELRLVNPCT-YLHPEARKFAVRAAPLLGKARVFPD 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+ADL    A T R     +  L     A  L   + + + VG++FGRE  GLT++E
Sbjct: 70  LASALADLPMSVAAT-RRAGKLRGELLDVADAARLAAGLPAVEGVGLVFGREDAGLTSDE 128

Query: 137 IA 138
           ++
Sbjct: 129 VS 130


>gi|16082580|ref|NP_394470.1| rRNA methylase [Thermoplasma acidophilum DSM 1728]
          Length = 251

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 10/154 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P+   NIG VAR+MWN  L  L ++  R   P ++A + S     ++++  ++ +
Sbjct: 13  IVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENAEIYDD 69

Query: 77  LKEAIADLHFIYATTA---RNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               I+  + I AT++    N  +F+ + L P++    ++++   G  + ++FGRE  GL
Sbjct: 70  FASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQ---GGKIALVFGREDDGL 126

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            NEEI   N  I+ P NP +P  N+S AV ++++
Sbjct: 127 RNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILY 160


>gi|119713222|gb|ABL97289.1| RNA methyltransferase [uncultured marine bacterium HF10_05C07]
          Length = 243

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 16/241 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV+P    NIG  ARA+ N    +L LVNPR    +E+A   + +A  ++++  ++ + 
Sbjct: 12  ILVEPSHPGNIGACARAIKNMGFKKLALVNPRKKI-TEEAFHRAKSAKDILENTVIYKSF 70

Query: 78  KEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             AI D + I AT+AR R   + +    K +  V ++        GI+FGRE  GL+NEE
Sbjct: 71  DLAIGDKNLILATSARERTIPWPTFYVDKISDEVKSQIKTKTTKTGIVFGREDNGLSNEE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTPATKGEL 192
           +   +  +  P +  + SLN+S A+ ++ +E      +N I+ +E  V+E  +     +L
Sbjct: 131 LQKCHYHLIIPASEEYSSLNLSHALQIVAFEIRKIVFDNKILKTE--VREVVSNLENEKL 188

Query: 193 LSFLDYLEISLEERGYFRPVEKK--KKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           L  L  +E+ L++  ++ P   K  K  +D L     +  L + E+ +LRG +S +  F 
Sbjct: 189 LEHL--MEV-LKKIDFYDPKSSKQVKTRIDRLIK---KTRLDKIEMGILRGFLSKIIDFE 242

Query: 251 R 251
           +
Sbjct: 243 K 243


>gi|226227447|ref|YP_002761553.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226090638|dbj|BAH39083.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 283

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 9/155 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRV 73
            ++L + Q   NIG V RAM N  +  LRL+ P    P +  R      D   +++ ++ 
Sbjct: 10  TVVLYESQDSINIGGVVRAMKNMGVRDLRLIRP---CPYDPNRVEQVAHDTRDIVERIQH 66

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132
           F  + EA+AD  ++   + R +        P+ AA+ L E  F+ Q  V I+FGRE  GL
Sbjct: 67  FETIDEALADCVYVVGFSGRRQAARWQRHTPRTAAVDLLE--FAQQGRVAIMFGREDHGL 124

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            NE +  SNAI + P    F SLN++QA LL ++E
Sbjct: 125 PNEALDRSNAICTIPTTEHF-SLNVAQACLLALYE 158


>gi|160897751|ref|YP_001563333.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
 gi|160363335|gb|ABX34948.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
          Length = 275

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 43/268 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
            +L++     N+G  ARA+       L LV PR  WP+    E+    ++ A  V+ + R
Sbjct: 5   FVLIETSHAGNVGAAARALKTMGFDDLVLVRPR--WPNVLRKEETIQRASGALDVLGNAR 62

Query: 73  VFSNLKEAIADLHFIYAT--TARN--------RNNFKSVL--------------APKEAA 108
           V   L+EA+  +  + AT  T R+        R +F+ +L              A  EAA
Sbjct: 63  VVETLEEALDGISHLCATAMTPRDFGPPTRTPRQHFELLLSGALDVLAAPDVSDAADEAA 122

Query: 109 IVLNERIFSG--------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
              +  + +           V  +FG ER+G++N+++  S+  +S P NP F SLN+  A
Sbjct: 123 PPTDASVSAPAPAPRCNQSGVAFLFGCERFGMSNDDVYRSDVALSIPSNPQFGSLNLGAA 182

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
           + ++ +E  +   +     V+    P  A   ++   L + E +L   G+  P    KK+
Sbjct: 183 IQVVAYEWRQ--ALGGFPVVEHTPAPQRADAAQVAGMLGHWEQALAHIGFLDPA-APKKL 239

Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +  L  +F R +L  EE+ +LRG+   +
Sbjct: 240 MPRLNQLFNRSQLTAEEIHILRGVAKAM 267


>gi|42527587|ref|NP_972685.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41818415|gb|AAS12604.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 251

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 14/179 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
            IIL  P+   NIG V R M N   + LR+   ++ +   +    + +A  V    R + 
Sbjct: 6   TIILCRPETSANIGAVCRVMANTGFSDLRITGTKEDYDETEVLKLALHASHVWKKARFYP 65

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                LKEA +D   +  T+ R  +  K + ++P++  + L+ + F G  +G++FG ER 
Sbjct: 66  PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPED--LCLDLKKFYGGRLGLVFGNERT 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPA 187
           GL +EE+ + +  ++ P    F S N+S AVL++ +     S+  +EKN  + E++ P+
Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY-----SLYIAEKNNPLTEKDNPS 177


>gi|221065807|ref|ZP_03541912.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
 gi|220710830|gb|EED66198.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
          Length = 266

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 34/259 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
            +L++     N+G  ARA+       L LV PR  +    E+    ++ A  V+D  RV 
Sbjct: 5   FVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDRARVV 64

Query: 75  SNLKEAIADLHFIYAT--TARN--------RNNFKSVLA--------PKEAAIVLNERIF 116
             L EA+  +  + AT  T R+        R +F+ +L         P E A + + +  
Sbjct: 65  DTLDEALEGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSIPAEDAGLTDNQPT 124

Query: 117 SG-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G     + V  +FG ER+G++N+++   +  +S P NP F SLN+  A+ ++ ++    
Sbjct: 125 PGAVCNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRAA 184

Query: 172 ----SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
                +V     V   +    +G     L + E +L   G+  P    KK++  L  +F 
Sbjct: 185 LGGFPVVEHTPEVHRADMAQVQG----MLGHWEQALAHIGFLDPA-APKKLMPRLNQLFN 239

Query: 228 RPELMREEVFLLRGIVSTL 246
           R +L +EE+ +LRG+   +
Sbjct: 240 RAQLTQEEIHILRGVAKAM 258


>gi|120610753|ref|YP_970431.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120589217|gb|ABM32657.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 277

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 41/272 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVRV 73
           IL+      N+G  ARAM       L LV PR  W +    E+    ++ A  V+++ R+
Sbjct: 6   ILIQTSHAGNVGAAARAMKTMGFGDLVLVAPR--WSNVLRREETIQRASGALDVLENARI 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE------------AAIVLNERIFSGQNV 121
            + L EA+  +  + AT    R+      +P+E            AA  L E    G   
Sbjct: 64  VATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLARRQSADAAHPLAELALEGGIA 123

Query: 122 GI----------------------IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            +                      +FG ER+G+ NE++   +  +S P NP F SLN+  
Sbjct: 124 PVPPADADPVSAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGA 183

Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219
           A+ ++ +E          ++    + PA   ++   L + E +L + G+  P    KK++
Sbjct: 184 AIQVIAYEWRLALGGFPVRDAAPASVPADAAQVAGMLAHWERALVDVGFLDPA-APKKLM 242

Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             L  +F R +   EE+ +LRG+   + + +R
Sbjct: 243 PRLNQLFNRAQPTPEEIHILRGVAKAMSEAAR 274


>gi|91225152|ref|ZP_01260374.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|91190095|gb|EAS76366.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
          Length = 215

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 9/218 (4%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    L QL LV+P+     E+  + +A A  +  + ++   L+EA+ D   +  ++AR+
Sbjct: 1   MKVMGLNQLVLVDPQ-CEVDEQTLALAAGAGDIAQNAKIVGTLEEAVEDCGLVVGSSARS 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R     +L P+E      +    G+   V ++FGRER GLTNEE+   +  +  P NP +
Sbjct: 60  RTLEWPMLEPRECG---EKFAVEGRKHPVALVFGRERTGLTNEELQKCHYHVCIPANPEY 116

Query: 153 PSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFR 210
            SLN++ AV  + +E      ++  S+ +  E        EL  F ++LE  + E  +  
Sbjct: 117 SSLNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHRELEMFFEHLEKVMVETQFIN 176

Query: 211 PVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+  ++++ L  +F R     +E+ +LRG++++++K
Sbjct: 177 K-EQPGQVMNKLRRLFSRARPETQEINILRGVLTSIEK 213


>gi|126465680|ref|YP_001040789.1| RNA methyltransferase [Staphylothermus marinus F1]
 gi|126014503|gb|ABN69881.1| RNA methyltransferase, TrmH family, group 1 [Staphylothermus
           marinus F1]
          Length = 231

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 14/177 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  +   N+G +AR   NF + +L LV P      E+A   +A A   +    +  +
Sbjct: 5   VVLVGIEGSVNLGFIARTCVNFGVDELYLVKP--AADLEEALRYAAKASDYLKKAIIVDD 62

Query: 77  LKEAIADLHFIYATTARNR---NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L +AI D+  + ATTA+     +  +  +  ++   ++  R+     + I+FGRE  GLT
Sbjct: 63  LVDAIKDVDLVVATTAKGYSVGDVVRQAVPLRDFVEMVKGRV---NRLAILFGRESTGLT 119

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
            +E+  ++ +++ P NP +P LN+SQAV + +WE      + + + V+ +N P + G
Sbjct: 120 RKELRYADVLVTIPANPEYPVLNLSQAVAVFLWE------IWNIRGVRAENIPPSAG 170


>gi|320537986|ref|ZP_08037891.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
           F0421]
 gi|320145143|gb|EFW36854.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
           F0421]
          Length = 240

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 7/157 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+L  P+  +NIG V RAM N +  +LR+      +  E+    + +AD +  + R F 
Sbjct: 5   IIVLARPEKSKNIGSVCRAMANSDCAELRITGNASDYDQEEICRLAIHADNIWKTARFFE 64

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                L++A+ D   +  TT R     KS  +AP++ A    E+        I+FG ER 
Sbjct: 65  PSVEGLRQAVYDCAIVAGTTRRMGEKRKSWGMAPEQFASFAFEQ--GAGKAAIVFGNERT 122

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           GLT++E+ + +  I+ P    FPSLN+S AV ++ +E
Sbjct: 123 GLTDKELDICSLAINIPSAQNFPSLNLSHAVQIICYE 159


>gi|284161302|ref|YP_003399925.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
           profundus DSM 5631]
 gi|284011299|gb|ADB57252.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
           profundus DSM 5631]
          Length = 234

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 19/233 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + LV  ++ EN+G VAR M NF   +L L N +    S K   ++++A  ++ +  V   
Sbjct: 4   VYLVGLKIPENVGFVARVMKNFGFEKLYLYNCKVTTVSFK---TASHARDILRNAVVLRK 60

Query: 77  LKEAIADLHFIYATTARNRNNF-----KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  ++ +  TT     ++     K +  P+E    L  +   G+ + + FGRE +G
Sbjct: 61  FDDILDHVNMLVGTTGVTAYSYERYIRKPIFTPEEFRNFLEGK--KGE-IAVAFGREDYG 117

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NEE+ L + ++S P NP +P +N+S AV ++++E      +S  K   E  T  T  E
Sbjct: 118 LFNEELELCHMLVSVPTNPEYPVMNVSHAVAVILYE------LSKGKYGLEDKTIVTARE 171

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
           +   ++  E  + E  Y R   ++ K+   L  I  R  + R E+ +L GIV+
Sbjct: 172 IEKLVENFEKLMLETWYPRHRIERTKI--ALRRILGRSLITRRELAVLHGIVT 222


>gi|325958420|ref|YP_004289886.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
           AL-21]
 gi|325329852|gb|ADZ08914.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
           AL-21]
          Length = 233

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 87/156 (55%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++ V+P+   NIG +AR M NF LT L L+NP +     ++   + +A  V+ +  ++  
Sbjct: 4   VVFVEPESPGNIGFLARTMKNFGLTNLVLINPCE--LKNESYYQAMHARDVVSNCEIYET 61

Query: 77  LKEAI--ADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+E +  A++    ATT     ++   K  + P+     L++ I  G N+ +IFGRE  G
Sbjct: 62  LEEFLEKANISTAVATTGNAGGSYNISKIAVTPE----TLSDSINYGGNICLIFGREGNG 117

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L+N+EIAL + I+S P +  +  +N++ A  ++ +E
Sbjct: 118 LSNQEIALCDVIVSIPTHEEYQIMNVTHAAAIIFYE 153


>gi|269214401|ref|ZP_05986486.2| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
           ATCC 23970]
 gi|269209997|gb|EEZ76452.1| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
           ATCC 23970]
          Length = 238

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 104/197 (52%), Gaps = 3/197 (1%)

Query: 52  WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
            P E    +S  AD V+ +  + + L EA+AD     A T+R R     +  P++    L
Sbjct: 38  LPEESFILASGAAD-VLHNAEIVATLDEALADTAIACALTSRRREITAPLQTPRDLVPEL 96

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV ++ +E    
Sbjct: 97  LQAAQRGEQVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQ 156

Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
           +  S   ++++++  AT  ++   + ++E  +++ G+F      ++++  + S+F R   
Sbjct: 157 T-GSPMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANT 214

Query: 232 MREEVFLLRGIVSTLDK 248
             E++ +LRG  +TL +
Sbjct: 215 QTEDIDILRGFFNTLQQ 231


>gi|297526044|ref|YP_003668068.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
           12710]
 gi|297254960|gb|ADI31169.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
           12710]
          Length = 231

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 94/173 (54%), Gaps = 14/173 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  +   N+G +AR   NF++ +L LV P      E  R ++   D +  ++ +  +
Sbjct: 5   VVLVGVEGSVNLGFIARTCVNFSVDELYLVKPAADL-GEALRYAAKARDYLKKAI-IVDD 62

Query: 77  LKEAIADLHFIYATTARNR---NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L +AI D+  + ATTA+     +  +  +  K+ A ++  R+     + I+FGRE  GLT
Sbjct: 63  LADAIRDVDLVVATTAKGYSVGDVVRQAVPLKDFADMIRGRV---NRLAILFGRESTGLT 119

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            +E+  ++ +++ P NP +P LN+SQAV + +WE      + + K ++ +N P
Sbjct: 120 RKELRYADVLVTIPANPEYPVLNLSQAVAVFLWE------IWNIKGIRAENIP 166


>gi|124485957|ref|YP_001030573.1| hypothetical protein Mlab_1137 [Methanocorpusculum labreanum Z]
 gi|124363498|gb|ABN07306.1| RNA methyltransferase, TrmH family, group 1 [Methanocorpusculum
           labreanum Z]
          Length = 248

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 17/230 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    NIG  AR M NF    + LVNP        ARSS A  D + ++ R+  +
Sbjct: 6   IVLVEPLYEGNIGFAARVMKNFGFHNMVLVNPPKLTMECTARSSHAK-DVLENAERI--S 62

Query: 77  LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT 133
           L+E  A      ATT   +++    +  P  +   L E I    G+ + I+FGRE WGL 
Sbjct: 63  LEEVFARSDLCIATTGGLSKSVSNPMRMPYYSVAELREMIEGIDGR-ISILFGRENWGLN 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEEIA  + + + P +  +P +NIS A+ ++ +E             + +   A K E+ 
Sbjct: 122 NEEIAKCDIVCTIPTSDEYPIMNISHAIGIVCYELAHLQ--------RGEYLLANKTEMN 173

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +   ++E  LE  G   P+EK++  +     +  R  L   E   L GI+
Sbjct: 174 ALYAHIERFLE--GIQHPIEKRETTVLLARRVLGRTRLTVREASTLHGIM 221


>gi|239908205|ref|YP_002954946.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
 gi|239798071|dbj|BAH77060.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
          Length = 250

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 14/235 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVF 74
            I+L  P+  EN+G  ARA  N  + +L LV+P   +  E+AR  +++    V+D + + 
Sbjct: 6   TIVLFRPKFSENVGAAARACANMGVGRLVLVDP-PAFDMERARPMATSKGGLVLDRLEIC 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L EA+A    +Y TTAR     KSVL P +AA    + +  G  V ++FG E  GL+N
Sbjct: 65  GTLAEAVAGAETVYGTTARLGGWRKSVLTPGQAAGGAVKTLQGGGGVAVVFGPEDAGLSN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTP---AT 188
           +E  L + +++ P      SLN++QAVL++ +E     I  + K ++E   Q +P   AT
Sbjct: 125 QETQLCSRLVNIPTADEATSLNLAQAVLVVCYE-----IFKASKGLEEEVDQPSPSRAAT 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
             E  S    L  SL    + +       ML  +     R  L R E  LL G+ 
Sbjct: 180 HAERESLFAALRESLLAIDFLKADNPDYWML-PVRRFIDRVGLKRHEFNLLMGVC 233


>gi|332796504|ref|YP_004458004.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
           W1]
 gi|332694239|gb|AEE93706.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
           W1]
          Length = 228

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 87/154 (56%), Gaps = 10/154 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   N+G VAR   NF + +L +V P+    S  A   SA  + ++ + ++  N
Sbjct: 4   VVLVEPEGEYNVGFVARLCKNFEVDELFIVRPKCDINS--AIKFSAKGESILRNAKIVDN 61

Query: 77  LKEAIADLHFIYATT--ARNRNN-FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +A+ D+    AT+  A N+ +  +  + P E   V+       + + +IFGRE  GLT
Sbjct: 62  YDDALKDVEIKIATSSIANNKGDILRKAVFPWELPSVMK-----SEKIALIFGRESVGLT 116

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            EEI+ ++ ++  P NP +P+LN+S AV ++++E
Sbjct: 117 REEISKADFLLFIPANPNYPTLNLSHAVGIVLYE 150


>gi|325474454|gb|EGC77641.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 251

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 14/179 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
            IIL  P+   NIG V R M N   + LR+   ++ +   +    + +A  V  + R + 
Sbjct: 6   TIILCRPETSANIGAVCRVMANTGFSDLRITGNKEDYDETEVLKLALHASHVWKNARFYP 65

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                LKEA +D   +  T+ R  +  K + ++P++  + L+ + F G  +G++FG ER 
Sbjct: 66  PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPED--LCLDLKKFYGGRLGLVFGNERT 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPA 187
           GL +EE+ + +  ++ P    F S N+S AVL++ +     S+  +EKN  + E + P 
Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY-----SLYIAEKNNPLSENDNPG 177


>gi|237800027|ref|ZP_04588488.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022882|gb|EGI02939.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 171

 Score = 79.3 bits (194), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 11/159 (6%)

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +L P+ +   + E+   G  V ++FGRE  GLTNEE+   +  +  P +P F SLN++ A
Sbjct: 7   LLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAA 66

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTP--------ATKGELLSFLDYLEISLEERGYFRPV 212
           V ++ +E     +  SE+   E + P        AT  E+  F  +LE +L + G+  P 
Sbjct: 67  VQVLSYEVRMAWLALSEQG--EASRPASAHSAELATMDEMEGFYGHLESTLVDIGFLDP- 123

Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           EK + ++  L  +F R E+ R E+ +LRG+++   K +R
Sbjct: 124 EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQKVAR 162


>gi|312136457|ref|YP_004003794.1| RNA methyltransferase, trmh family, group 1 [Methanothermus
           fervidus DSM 2088]
 gi|311224176|gb|ADP77032.1| RNA methyltransferase, TrmH family, group 1 [Methanothermus
           fervidus DSM 2088]
          Length = 231

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 25/240 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++ V+P+   NIG +ARAM NF L +L L+NP     S++A   + +A  +I + +V+ +
Sbjct: 7   VVFVEPKTAGNIGFMARAMKNFGLKKLILINP--CKLSKEAYYHAVHAKDIIKNSKVYES 64

Query: 77  L-----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L     KE I  L       A +RN  +  + P+     L E I   +N  I+FGRE  G
Sbjct: 65  LNKMLEKENINLLVGTSGVVAGDRNIERISVTPE----YLAENI--QKNTAILFGREDHG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPAT 188
           L + E+ + + I++ P +  +P +N+S A  ++ +E    ME++    ++    +     
Sbjct: 119 LYSHELRMCDLILTIPTSKEYPIMNVSHAAAVIFYELFKKMEDTCEIEKEIASYKEKELL 178

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K E+   +  L++         P+ KK+  +    +I  R  L ++E  +L GI  ++ +
Sbjct: 179 KKEINEVVSKLDM---------PIHKKRNAIKVFKNIIGRSFLTKKEFHVLMGIFRSIKR 229


>gi|297623111|ref|YP_003704545.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297164291|gb|ADI14002.1| RNA methyltransferase, TrmH family, group 1 [Truepera radiovictrix
           DSM 17093]
          Length = 248

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 15/228 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I+LV P+   N+G  ARAM NF L  L LV P+   P   +A + +++A  V+       
Sbjct: 16  IVLVRPKDPANVGAAARAMKNFGLGDLHLVAPQR--PIGRRAYALASHAQDVLQRAVEHE 73

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++ EA+     +  TTAR R   + +  P+EAA  L       + + ++FG E +GL+N+
Sbjct: 74  SVAEALKGCTLVLGTTARERREGR-MYTPREAAQTLTP-----EGLAVLFGPEDFGLSND 127

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++      I  P    + SLN++QAV L+ +E    S      +  E+   A +  L   
Sbjct: 128 DLKHCQGYIRIPTAA-YASLNLAQAVQLVAYEWFVTSQEQPPPSPPEER--AARELLEGM 184

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLY-SIFIRPELMREEVFLLRGI 242
            D+L  +L   GY     +++   + L+ +IF R +L   EV  LRG+
Sbjct: 185 YDHLLKTLHLIGYTDA--QRQGSAERLFRAIFDRADLSAREVAALRGL 230


>gi|119774888|ref|YP_927628.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
 gi|119767388|gb|ABL99958.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 225

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 103/197 (52%), Gaps = 7/197 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G  ARAM     TQL L+  +     E AR  +  A  ++D+ RV  +
Sbjct: 4   VVLVEPARAANVGAAARAMKTMGFTQLILIGSQPHLEDE-ARWVAHGATDILDNARVLDS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +  A+   + ATTAR R + ++ L P+E AI L +     Q++ ++FGRE  GL+N+E
Sbjct: 63  FDDLRAEFDLLIATTARERGSPRTFLNPEELAITLGQS--GAQSMALVFGRESSGLSNQE 120

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW--ECMENSIVSSEKNVKEQNTPATKGELLS 194
           ++  +     P+   +PSLN+ QAV++  +    +E +I    ++  E+   + K +   
Sbjct: 121 LSQCDLFSYVPLAGDYPSLNLGQAVMVYTYALSGVERTIGLQTRDADERQIQSLKHKANE 180

Query: 195 FLDYLEISLEERGYFRP 211
             +  ++ L E+   RP
Sbjct: 181 LAN--QLGLSEQDKLRP 195


>gi|302338807|ref|YP_003804013.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635992|gb|ADK81419.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 235

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 17/203 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+PQ   NIG V RAM N  +  L +V  RD +   +  + + +A  +  +   F +
Sbjct: 6   IVLVEPQTAGNIGSVCRAMKNMGIHDLAIVGARD-YDENRVLTLALHARDIWHNALRFPD 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +  A+ D  F    T R R  F+    L P+E A  ++  I SG  V  +FGRE  GL +
Sbjct: 65  IDAALEDCVFSAGIT-RRRGKFRKYFSLLPEEFAKRISA-IESG-TVAAVFGREADGLRD 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE---CMENSIVSSEKNVKEQNTPATKGE 191
           +E+A  +  +  P +P FPSLN+S AV ++ +E   C   S V+ +  +K ++       
Sbjct: 122 DELARCSVAVHIPSSPDFPSLNLSHAVQIICYELFRCRTPSSVTFQP-IKRRDVDKVAAT 180

Query: 192 LLSFLDYLEISLEERGYFRPVEK 214
           ++   D +       G+F+  EK
Sbjct: 181 IVDNFDAI-------GFFKQDEK 196


>gi|255075243|ref|XP_002501296.1| predicted protein [Micromonas sp. RCC299]
 gi|226516560|gb|ACO62554.1| predicted protein [Micromonas sp. RCC299]
          Length = 467

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 26/149 (17%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-----------------PSEKARSS 60
           +L  PQ  +NIG +AR M NF +T LR+V P  G                  P  +AR+ 
Sbjct: 81  VLCRPQGPQNIGGIARVMQNFGVTDLRIVAPEPGALAPPFDAADEYDRAIHPPEVRARAP 140

Query: 61  --------SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
                   + +AD ++   R  +   EA+AD+ F+ ATTAR R N  S+   + A+ VL 
Sbjct: 141 LSDEAHKFAVHADWLLRDARRCATADEALADVAFVAATTARPRENL-SIADVRAASEVLR 199

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +G  V ++FG E  GLTN+E+A +N
Sbjct: 200 RHAANGTKVAVVFGNEATGLTNDELARAN 228


>gi|264679621|ref|YP_003279528.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
 gi|262210134|gb|ACY34232.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
          Length = 267

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 30/256 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +L++     N+G  ARA+       L LV PR  +    E+    ++ A  V+D  RV  
Sbjct: 7   VLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARVVD 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEA------------------AIVLNERIFS 117
            L+EA+  +  + AT    R+       P+E                   A + +    S
Sbjct: 67  TLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDVRSVSEVDAGLTDNLPTS 126

Query: 118 G-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECME 170
           G     + V  +FG ER+G++N+++   +  +S P NP F SLN+  A+ ++   W    
Sbjct: 127 GAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRVAL 186

Query: 171 NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
                 E   +     A   ++   L + E +L   G+  P    KK++  L  +F R +
Sbjct: 187 GGFPVVEHTPEAHR--ADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQ 243

Query: 231 LMREEVFLLRGIVSTL 246
           L +EE+ +LRG+   +
Sbjct: 244 LTQEEIHILRGVAKAM 259


>gi|299533288|ref|ZP_07046672.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
 gi|298718818|gb|EFI59791.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
          Length = 266

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 110/257 (42%), Gaps = 30/257 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
            +L++     N+G  ARA+       L LV PR  +    E+    ++ A  V+D  RV 
Sbjct: 5   FVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARVV 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEA------------------AIVLNERIF 116
             L+EA+  +  + AT    R+       P+E                   A + +    
Sbjct: 65  DTLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSVSEVDAGLTDNLPT 124

Query: 117 SG-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV--WECM 169
           SG     + V  +FG ER+G++N+++   +  +S P NP F SLN+  A+ ++   W   
Sbjct: 125 SGAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRVA 184

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
                  E   +     A   ++   L + E +L   G+  P    KK++  L  +F R 
Sbjct: 185 LGGFPVVEHTPEAHR--ADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRA 241

Query: 230 ELMREEVFLLRGIVSTL 246
           +L +EE+ +LRG+   +
Sbjct: 242 QLTQEEIHILRGVAKAM 258


>gi|261417472|ref|YP_003251155.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373928|gb|ACX76673.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327174|gb|ADL26375.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 269

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 14/192 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   N+G VARAM  + L +L +V P+     +K+  ++AN+  ++D+ +V   
Sbjct: 6   VVLVEPEHPHNVGFVARAMHCYALPELYIVYPKRDKVLDKSYHTAANSHDILDNAKVVHK 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIFGRERWGLTNE 135
            ++AI D        A +R  F S +  K   +  L++ +     + ++FGRE  GL  E
Sbjct: 66  FEDAIGD---CSCAVAYSRRIFASSI--KHTMVQNLSDMLPEDGTIALVFGRESCGLALE 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKE------QNTPAT 188
           E+         PV P   SLN+ QAV + ++E C   ++ + E   K       +  PAT
Sbjct: 121 EVNACTYQCEIPV-PGLMSLNLGQAVSISLYELCRSGALANGEGRAKRTTRGVAETGPAT 179

Query: 189 KGELLSFLDYLE 200
             ++  F  +L+
Sbjct: 180 IQQIDGFKKFLD 191


>gi|197123484|ref|YP_002135435.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196173333|gb|ACG74306.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 237

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 19/207 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--------ARSSSANADCVI 68
           ++L+ P+  EN+G VARAM NF           D W   +         R  + +A+ ++
Sbjct: 7   LVLLRPRNPENLGAVARAMKNFGA---------DDWAIAELGTHDFAAMRRVAVHAEELL 57

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  R+   L EA+AD  ++  T++R     K  L P E A    ER  +G+   I+FG E
Sbjct: 58  DRPRLVRTLDEAVADCAWVVGTSSRTVKG-KRRLPPAEVAREALERAAAGRTA-IVFGDE 115

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           R GLTN+E+   + + + P     PSLN++QA L+ ++E  + ++ ++    +     AT
Sbjct: 116 RSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPPRAAEAGAT 175

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKK 215
             EL +  D L  +L   G+    E+ 
Sbjct: 176 DAELTAVEDALRAALRGGGFLAGPERH 202


>gi|154150404|ref|YP_001404022.1| RNA methyltransferase [Candidatus Methanoregula boonei 6A8]
 gi|153998956|gb|ABS55379.1| RNA methyltransferase, TrmH family, group 1 [Methanoregula boonei
           6A8]
          Length = 261

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 13/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I+LV P    N+G  AR M NF  T+L LV+P    P  E+A+  +++A  V+ +  + +
Sbjct: 6   IVLVAPLYEGNVGFAARVMKNFGFTRLVLVDP---CPLGEEAKGRASHAQDVLGNAEICT 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV----LNERIFSGQN-VGIIFGRERW 130
            +++  A    + ATT +     KSV  P          L ERI   +  V I+FGRE W
Sbjct: 63  -IEDVFARSSIVVATTGQVS---KSVCNPMRMPFYSPRELRERIGIAEGRVSILFGRENW 118

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           GL N+E+  S+ I + P +  +P +N+S AV ++ +E
Sbjct: 119 GLNNDEVKRSDMICTIPTSDEYPIMNLSHAVGIVCYE 155


>gi|257388813|ref|YP_003178586.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
           mukohataei DSM 12286]
 gi|257171120|gb|ACV48879.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
           mukohataei DSM 12286]
          Length = 241

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 25/249 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVF 74
            + +VD +   N+G +AR+M NF L +L L++P D     +A   +  A + ++   R  
Sbjct: 5   AVAVVDAETPGNVGTIARSMKNFGLDELLLIDPPDLPRESEAYGYAGQAREDILPEAREI 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLT 133
           S   E + + H +  T   N +  K V  P      L + +     +  I+FGRER GLT
Sbjct: 65  S-FDELVTEYHTVGCTAITNEDGSKHVRYPFVTPRDLADDLAGLDADTAIVFGRERVGLT 123

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPATKG 190
           N+EI   + + S P +  +P LN+ QA  ++++E    ++  +   +        P  +G
Sbjct: 124 NDEIERLDQVCSIPASEEYPVLNLGQAATIVLYELRSLTVEDTQLPDPTHDRAAQPEIEG 183

Query: 191 ---ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +   FLD ++          P EK+ K       +  R      E   LRG+     
Sbjct: 184 LHEQFAGFLDAID---------HPEEKRAKTRRLFQRLIGRAHPTGRETTTLRGLF---- 230

Query: 248 KFSRQSSRR 256
              RQ+S+R
Sbjct: 231 ---RQASQR 236


>gi|301429526|dbj|BAJ12142.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein
           [Pseudomonas putida]
          Length = 135

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   AP L    +   ++LV+     NIG  ARAM N  L++L LV PR  +P  +A + 
Sbjct: 1   MCSRAPPLLQKIR---VVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPRL-FPHHEADAR 56

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  +++  +V + L++A+   + +  T+AR+R     +L P+E    + E    G  
Sbjct: 57  ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116

Query: 121 VGIIFGRERWGLTNEEI 137
           + ++FGRE  GLTNEE+
Sbjct: 117 IALVFGREDSGLTNEEL 133


>gi|301429516|dbj|BAJ12137.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein
           [Pseudomonas putida]
          Length = 133

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   AP L  + +   ++LV+     NIG  ARAM N  L++L LV PR  +P  +A + 
Sbjct: 1   MCSRAPPLLQNIR---VVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPRL-FPHHEADAR 56

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  +++  +V + L++A+   + +  T+AR+R     +L P+E    + E    G  
Sbjct: 57  ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116

Query: 121 VGIIFGRERWGLTNEEI 137
           + ++FGRE  GLTNEE+
Sbjct: 117 IALVFGREDSGLTNEEL 133


>gi|15679837|ref|NP_276955.1| hypothetical protein MTH1849 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622984|gb|AAB86315.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 240

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 5/153 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++ V+P+   NIG +ARAM NF L  L L+NP +    ++A   + +A  +++   ++ +
Sbjct: 13  VVFVEPETPGNIGFLARAMKNFGLRTLILINPCE--LEDEAYYQAMHARDIVEGALIYRD 70

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L E I  L   F+  TT     ++     P   +  L + I       I+FGRE  GL+N
Sbjct: 71  LSEMIDSLEPDFLVGTTGVPGGSYNVDRIPLRPS-QLADAIRPSSGTFILFGREGDGLSN 129

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           EEI L + ++S P +  +P +NI+ A  ++ +E
Sbjct: 130 EEIGLCDMVVSVPTSEEYPIMNITHAAAIIFYE 162


>gi|301429520|dbj|BAJ12139.1| tRNA (cytidine/uridine-2'/O-)-methyltransferase- like protein
           [Pseudomonas putida]
          Length = 141

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 4/137 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   AP L  + +   ++LV+     NIG  ARAM N  L++L LV PR  +P  +A + 
Sbjct: 1   MCSRAPPLLQNIR---VVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPRL-FPHHEADAR 56

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  +++  +V + L++A+   + +  T+AR+R     +L P+E    + E    G  
Sbjct: 57  ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116

Query: 121 VGIIFGRERWGLTNEEI 137
           + ++FGRE  GLTNEE+
Sbjct: 117 IALVFGREDSGLTNEEL 133


>gi|254424557|ref|ZP_05038275.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196192046|gb|EDX87010.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 238

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 79/146 (54%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+P    NIG  ARA+     T LRLV P+    S  AR+ +  ++ ++++   + +L
Sbjct: 7   VLVEPGEAGNIGAAARAINTMGYTDLRLVRPKADHLSGIARAMAHGSEHILENAPQYEDL 66

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A+  +    A+TAR+R      ++ ++   +L  +      V I+FG ER GL+N++I
Sbjct: 67  AGALDGIDLACASTARHRMQKYHYVSVRDLPDLLEAKGHLVSTVAIVFGSERSGLSNQDI 126

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLL 163
              + + + P     PSLN++QAV++
Sbjct: 127 QTCDLVTTIPQITPQPSLNLAQAVMI 152


>gi|220918283|ref|YP_002493587.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956137|gb|ACL66521.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 237

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 19/207 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--------ARSSSANADCVI 68
           ++L+ P+  EN+G VARAM NF           D W   +         R  + +A+ ++
Sbjct: 7   LVLLRPRNPENLGAVARAMKNFGA---------DDWAIAELGTHDFAAMRRVAVHAEELL 57

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  R+   L EA+AD  ++  T++R     K  L P E A    ER  +G+   I+FG E
Sbjct: 58  DRPRLVRTLDEAVADCAWVVGTSSRTVKG-KRRLPPAEVAREALERAAAGRTA-IVFGDE 115

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           R GLTN+E+   + + + P     PSLN++QA L+ ++E  + ++ ++    +     AT
Sbjct: 116 RSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPSRAAEAGAT 175

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKK 215
             EL +  D L  +L   G+    E+ 
Sbjct: 176 DAELTAVEDALRAALRGGGFLAGPERH 202


>gi|302341742|ref|YP_003806271.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
 gi|301638355|gb|ADK83677.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
          Length = 251

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 121/241 (50%), Gaps = 3/241 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P++ ENIG  ARA+ N  L  LRLV+P D         ++A    V++S+ V  +
Sbjct: 14  VVLVRPRVPENIGAAARAVANMGLGGLRLVDPADLTDKPMRALATAQGQRVLESMTVSDS 73

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+AD     ATTAR      +++ P++AA  +      G  V ++FG E  GL++E+
Sbjct: 74  LAAALADCVAAAATTARLGERRGALIPPRQAAPEIMTWARRGP-VAVVFGPEDRGLSHEQ 132

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L    I+ P +    SLN++Q+V+++ +E    +   +    ++  TPA  GE+ + L
Sbjct: 133 VDLCRLSINIPTSQ-ASSLNLAQSVIVLAYELRLAAENGAGLERRKLPTPAPLGEIQALL 191

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
            +L+ +    G+          +  L +   R  +  +EV   RG+   ++    + +R+
Sbjct: 192 AHLQEAFVNIGHLD-ANNPAHFMRLLKAPLERAAMTSKEVRAWRGVARQVNWLHGRLARK 250

Query: 257 N 257
           +
Sbjct: 251 D 251


>gi|78184293|ref|YP_376728.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
 gi|78168587|gb|ABB25684.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
          Length = 253

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 7/178 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV+P    NIG VAR   NFN+ +LRLV PR    SE +   + +   ++ S +++ 
Sbjct: 2   VVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHSAKLYP 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWG 131
            L  AI D     A+  R  +    + +P +A   L  R     +    + ++FGRE  G
Sbjct: 62  TLLSAIGDCRRSVASCGRIDHGAIPLHSPTDALTWLLARPTPEPHQPGPIAVVFGREDRG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           L+N+E+ L   +++      +PSLN+S +V +++ +      +S++ ++     P+ K
Sbjct: 122 LSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDMAR---LSTKLHIPSTADPSAK 176


>gi|116071061|ref|ZP_01468330.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
 gi|116066466|gb|EAU72223.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
          Length = 256

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 4/156 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV+P    NIG VAR   NFN+ +LRLV PR    SE +   + +   ++ + +++ 
Sbjct: 5   VVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHTAKLYP 64

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----NVGIIFGRERWG 131
            L  AI D     A+  R  +    +  P EA   L  +    Q     + ++FGRE  G
Sbjct: 65  TLLSAIGDCRRSVASCGRIDHGAIPLHPPTEALTWLLAKPTPAQPQPGPIAVVFGREDRG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L+N+E+ L   +++      +PSLN+S +V +++ +
Sbjct: 125 LSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHD 160


>gi|224368391|ref|YP_002602554.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
 gi|223691107|gb|ACN14390.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 37  NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96
           N  L QL +V P D   +   ++++ +A  ++D + + S L +A+A   ++  TTAR   
Sbjct: 2   NMGLDQLVVVAPDDFDRTRAEKTATHSAASILDRMEICSTLSQALAPFEYVVGTTARLGG 61

Query: 97  NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
             + V +P+  A+ +   +     V ++FG E  GLTN EI   +A+I+ P    F SLN
Sbjct: 62  Q-RLVESPRTVALRVAT-LCENNRVALLFGPEDRGLTNGEICFCHALINIPTLG-FSSLN 118

Query: 157 ISQAVLLMVWECMENSIVSSEKNV---KEQNTP--ATKGELLSFLDYLEISLEERGYFRP 211
           ++QAV+++ +E +    V  ++ +   K+Q  P  AT  EL      L + L E GY  P
Sbjct: 119 LAQAVVIVCYELL--VAVEHQQGLPLEKKQVVPRLATVSELEIMYQRLSLVLAEIGYVNP 176

Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266
            E     L+ +     R ++   E  +++G++  +  +     +R      +TEK
Sbjct: 177 -ENPDFWLNRVRQFLSRIKIQAGETGIVKGVIDRIVAYGESRYQRG-----QTEK 225


>gi|254787763|ref|YP_003075192.1| RNA methyltransferase [Teredinibacter turnerae T7901]
 gi|237684601|gb|ACR11865.1| putative tRNA/rRNA methyltransferase LasT [Teredinibacter turnerae
           T7901]
          Length = 233

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 4/150 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            ILV+P    N+G  ARAM      QL LV   D    E+A   +  A  ++ S   + +
Sbjct: 4   FILVNPARPANVGAAARAMKTMGFKQLILVG-SDIHLDEEAHWVAHGAQDILTSATCYPD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L     D   +  TTAR R + +  L+P E    L+++  SG++ G++FG E  GL+N++
Sbjct: 63  LASLKPDFDLLIGTTARERGSARRYLSPPELNSQLSQQ--SGRS-GLVFGCEASGLSNDQ 119

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +AL +     P+   +PSLN+ QAV++  +
Sbjct: 120 LALCDLYSYIPLATPYPSLNLGQAVMVYSY 149


>gi|330508017|ref|YP_004384445.1| TrmH family RNA methyltransferase [Methanosaeta concilii GP-6]
 gi|328928825|gb|AEB68627.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta concilii
           GP-6]
          Length = 245

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 105/238 (44%), Gaps = 25/238 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G VARAM NF    L LVNP        A +S A    V+   R FS 
Sbjct: 5   VVLVEPLYEGNVGSVARAMKNFGFHDLALVNPCKIEDYGCAMASHARD--VLQMSRSFST 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVL-----APKEAAIVLNERIFSGQN-VGIIFGRERW 130
           L EA+   + +  TT +   + +  L      P      L E++   +  V ++ GRE  
Sbjct: 63  LAEALEGANLVVGTTGKRLEHEQHHLRLHLRVPCLTPAGLAEKLRDKEGMVALLLGREDC 122

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-----MENSIVSSEKNVKEQNT 185
           GL ++EI+L + I+S P +  +P +N+S +  ++ +E        +S V   +       
Sbjct: 123 GLNSDEISLCDMIVSIPTSEEYPVMNLSHSAAILFYELSGIGSNSSSSVQMARKETLNLL 182

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
               G+LL+ + Y            P  K+   L  L  IF R EL   E   L GI+
Sbjct: 183 QERAGDLLADIAY------------PEHKEDYTLLMLRRIFGRAELTEREARALLGII 228


>gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304]
 gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 226

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 86/153 (56%), Gaps = 13/153 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+ ++ EN+G +AR   N+ + +L L   R    +E++  ++ANA  V+++  V  +L
Sbjct: 1   MLVELKIPENVGFIARVAKNYGIKRLCLYKCR---VTEESYHTAANAKDVLENAVVVEDL 57

Query: 78  KEAIADLHFIYATTARNRNNFK----SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +E +  ++ I  TT     ++K     +LAP++   V   R      V ++FGRE +GL 
Sbjct: 58  QEFLQRMNLIVGTTGIPGGDYKYLRKELLAPEDLPSVAKGR------VAVLFGREDYGLY 111

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           NEE+ + + ++  P +  +P +N+S A  ++++
Sbjct: 112 NEELEMCHVLVRVPTSEEYPVMNVSHAAAVILY 144


>gi|270346815|pdb|3KTY|A Chain A, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
 gi|270346816|pdb|3KTY|B Chain B, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
 gi|270346817|pdb|3KTY|C Chain C, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
          Length = 173

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 4/154 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           I   P    N+G  ARA+      +L LV PR  D     +A + ++ A  V++   V  
Sbjct: 14  IXTQPSHPGNVGSAARAIKTXGFGELVLVAPRFPDXTAQPEAVALASGALDVLERAAVHD 73

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLT 133
            L+EA+A +   +A T R R+        +EAA +    +   +   V I+ G ER GLT
Sbjct: 74  TLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLT 133

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           N +I L + I   P NP + SLN++QA+ L  WE
Sbjct: 134 NAQIELCHRICHIPANPQYSSLNVAQALQLAAWE 167


>gi|78213466|ref|YP_382245.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
 gi|78197925|gb|ABB35690.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
          Length = 243

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 7/235 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+P    NIG VAR   NF +++LRLV PR    S++A   + +   ++ +  V  +L
Sbjct: 1   MLVEPAGPLNIGSVARLCANFGVSELRLVAPRCDHLSDEAMLMAVHGQALLQAAVVVPDL 60

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAA----IVLNERIFSGQNVGIIFGRERWGLT 133
             AI D      +  R  +    +  P++A             SG  + ++FGRE  GL+
Sbjct: 61  LTAINDCRRTVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPMAMVFGREDRGLS 120

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGE 191
           N E+ L   ++       +PSLN+S AV +++ E    +  ++E    E  +  PA    
Sbjct: 121 NSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSGTTETRCIEPPSPDPAAAKA 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           L + ++     L E G+        +M   +  +  R  +  EEV LLRG+V  L
Sbjct: 181 LSACIEDASDLLLEAGFLLEHTAAARM-AKVRDLLQRATVRAEEVALLRGMVRQL 234


>gi|294788626|ref|ZP_06753868.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella
           muelleri ATCC 29453]
 gi|294483503|gb|EFG31188.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella
           muelleri ATCC 29453]
          Length = 268

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 115/244 (47%), Gaps = 21/244 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSANADC------- 66
           IIL       NIG  ARAM    L+QL LV P        +E    S+ +AD        
Sbjct: 13  IILSRTSHPANIGSAARAMKTMGLSQLVLVAPNLMATPMTTEPPEFSAEHADTFRLPEES 72

Query: 67  ---------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
                    +++  ++ + L EA+       A T+R R     +  P+E    L     +
Sbjct: 73  FILASGAVDILERAKIVATLPEALVGTTLSCALTSRRRELTAPLQTPRELTPNLLAAAQA 132

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           GQ V ++FG E +GL+ +E+   N +++   NP + SLN++QAV ++ +E          
Sbjct: 133 GQQVALVFGNETFGLSIDEVQHCNRLMTIAGNPNYFSLNLAQAVQVVCYELFSQVNADMS 192

Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
             + E++  AT  ++   + +LE ++E   +F     +++M+  L+S+F R +   E++ 
Sbjct: 193 HLIPERHL-ATADQVSGMVQHLEKAMEHLDFFHH-RNQERMIRRLHSLFNRADTTTEDID 250

Query: 238 LLRG 241
           +LRG
Sbjct: 251 ILRG 254


>gi|170289746|ref|YP_001736562.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173826|gb|ACB06879.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 246

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 9/155 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++ILV+P+  +N+GM+ARAM NF   +LR+V P          ++    D VI+ + + +
Sbjct: 5   IVILVEPEKADNVGMIARAMKNFGFYELRVVRPMFESFDRAIAAAMRARD-VIERMEILT 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGL 132
            L+EA   +  +  TTAR      S  + +  AI + + + S       G++ GRE  GL
Sbjct: 64  TLEEARRGVDLMIGTTAR-----VSRYSVERRAIPIRDLLSSISWDAVYGLVLGRESIGL 118

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           T EE++  + + + P +  +P+LN++ A  ++++E
Sbjct: 119 TTEELSYCDIVATIPSSEDYPALNVANAAAIILYE 153


>gi|149190103|ref|ZP_01868380.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
 gi|148836133|gb|EDL53093.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
          Length = 217

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 111/215 (51%), Gaps = 9/215 (4%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
             L+Q+ LV+P+    ++    ++  +D  + + ++  +L++AI D   +  ++AR+R  
Sbjct: 2   MGLSQMVLVDPQCEVDAQAIALAAGASDIALGA-QIVGSLQDAIEDCGLVVGSSARSRTL 60

Query: 98  FKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
              ++ P+E      +    G+   V ++FGRER GLTNEE+ L +     P NP + SL
Sbjct: 61  DWPMIEPRECG---EKFAIEGEQHPVALVFGRERTGLTNEELQLCHFHTCIPANPEYSSL 117

Query: 156 NISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVE 213
           N++ AV  + +E     +  V+++   +EQ       EL  F  +LE  + +  +    +
Sbjct: 118 NLAMAVQTLSYEVRVAHLQRVANQFPEQEQAEYPRHKELELFYQHLEKVITDTQFISK-D 176

Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K   +++ L  +F R     +E+  LRGI+++++K
Sbjct: 177 KPGLVMNKLRRMFSRARPESQEINTLRGILTSIEK 211


>gi|15790377|ref|NP_280201.1| hypothetical protein VNG1347C [Halobacterium sp. NRC-1]
 gi|10580859|gb|AAG19681.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 253

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 6/240 (2%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANA 64
           P  + +   P + +VD +   N+G +ARAM NF   +L LV+P   G  SE    +    
Sbjct: 7   PTTRPAMSKPAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGHAR 66

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGI 123
           + ++   R  S     +++ H +  T   N +       P      L + +   +    +
Sbjct: 67  EDILPEARELS-FDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTAL 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FGRER GLTN+E+A  + + S P +  +P +N+ Q+  + ++E  + ++  ++    E+
Sbjct: 126 VFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAMSETQLPDVER 185

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +  A + E+  F ++    L+   Y  P EK+ K +  L  +  R      E+  + G++
Sbjct: 186 HR-ADEAEIEQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHGLL 242


>gi|296241772|ref|YP_003649259.1| tRNA/rRNA methyltransferase [Thermosphaera aggregans DSM 11486]
 gi|296094356|gb|ADG90307.1| tRNA/rRNA methyltransferase (SpoU) [Thermosphaera aggregans DSM
           11486]
          Length = 232

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  +   N+G+++R   NF + +L LVNP      ++A   SA     ++   V  +
Sbjct: 4   VVLVGIEGAYNLGVISRTCVNFEVDELYLVNPSAS--IKEALIYSAKGKSFLEKAVVVDS 61

Query: 77  LKEAIADLHFIYATTARNRN------------NFKSVLAPKEAAIVLNERIFSGQNVGII 124
           L EA+  +    AT+A+  +             F S +AP+   + L            +
Sbjct: 62  LDEALKGVDASVATSAKGYSPGDVLRQAIDIETFTSQIAPRIGKLAL------------V 109

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           FGRE  GLT EE++ ++ ++S P NP +P LN+SQAV + +WE
Sbjct: 110 FGRESTGLTREELSKTDFLVSIPGNPEYPVLNVSQAVAIFLWE 152


>gi|332298868|ref|YP_004440790.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332181971|gb|AEE17659.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 251

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 5/152 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+L  P+   N+G V RAM N  + +LR+V  +  +  E+ R  + +A  + +    F 
Sbjct: 7   CIVLAHPEESRNVGAVCRAMANSGMKKLRIVGKKQDYDDERVRILAIHAAGIWERAEFFE 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + +A AD      TT R     K+ +L P+E A     +  +     ++FG ER GLT+
Sbjct: 67  TITQATADCPLSAGTTRRKGKKRKNMLLLPEEFA----RQAAAVPGAAVVFGNERTGLTD 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           EE+A     ++ P +  F SLN+S AV ++ +
Sbjct: 123 EELAECTVGVTIPSHESFASLNLSHAVQIICY 154


>gi|147919481|ref|YP_686779.1| rRNA methyltransferase [uncultured methanogenic archaeon RC-I]
 gi|110622175|emb|CAJ37453.1| rRNA methyltransferase (SpoU family) [uncultured methanogenic
           archaeon RC-I]
          Length = 249

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 10/156 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G V RAM NF    L LV P +   S KA +S A    ++ S  +   
Sbjct: 11  VVLVEPAFEGNVGSVCRAMKNFGFDDLVLVRPCELGNSAKAMASHAQD--LLASAAIVDT 68

Query: 77  LKEAIADLHFIYATTAR----NRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++EA+  +  I  TT +     R + +    +P+E   +L ++      V ++FG+E  G
Sbjct: 69  VEEALDGVSVIVGTTGKPGSSTREHIRMPCFSPRELKTLLEDK---QGTVALLFGKENHG 125

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L NE +     ++S P +  +P +N+S AV ++++E
Sbjct: 126 LPNEILEKCGVVLSIPTSDDYPVMNLSHAVAVVLYE 161


>gi|163749011|ref|ZP_02156262.1| putative RNA methyltransferase [Shewanella benthica KT99]
 gi|161331387|gb|EDQ02275.1| putative RNA methyltransferase [Shewanella benthica KT99]
          Length = 229

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 10/179 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V +LV+P    N+G  ARA+      QL LVN       E    +    D +  ++ V  
Sbjct: 4   VFVLVEPSRPANVGAAARAIKTMGFEQLILVNSNLHLDKEAHWLAHGATDILAQTL-VVD 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++ +  A    + ATTAR R   +  L P E    + +++ S + + ++FGRE  GL+N 
Sbjct: 63  SVADIRAQYDHLIATTARERGTPRQYLTPDELKDTVLQQLGSVKKIALLFGRESSGLSNS 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGEL 192
           E+ L +     P+   +PSLN++QAV  MV+     S   SE N  +K +   A +G+L
Sbjct: 123 ELELCDLFSYVPLINDYPSLNLAQAV--MVY-----SYALSEVNNRLKHKRVDAQEGQL 174


>gi|86159409|ref|YP_466194.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775920|gb|ABC82757.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 236

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 19/207 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--------ARSSSANADCVI 68
           ++L+ P+  EN+G VARAM NF           D W   +         R  + +A  ++
Sbjct: 7   LVLLRPRNPENLGAVARAMKNFGA---------DDWAIAELGTHDFAAMRRVAVHAGELL 57

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  R+   L EA+AD  ++  T++R     K  L P E A    ER  +G+   I+FG E
Sbjct: 58  DRPRLVRTLDEAVADCAWVVGTSSRAVKG-KRRLPPAEVAREALERAAAGRTA-IVFGDE 115

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           R GLTN+E+   + + + P     PSLN++QA L+ ++E  + ++ ++    +     AT
Sbjct: 116 RSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPARAPEAGAT 175

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKK 215
             EL +  + L  +L   G+    E+ 
Sbjct: 176 DAELSAVEEALRAALRGGGFLAGPERH 202


>gi|169236111|ref|YP_001689311.1| hypothetical protein OE2923F [Halobacterium salinarum R1]
 gi|167727177|emb|CAP13963.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 241

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 6/231 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRV 73
           P + +VD +   N+G +ARAM NF   +L LV+P   G  SE    +    + ++   R 
Sbjct: 4   PAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGHAREDILPEARE 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGL 132
            S     +++ H +  T   N +       P      L + +   +    ++FGRER GL
Sbjct: 64  LS-FDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTALVFGRERVGL 122

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           TN+E+A  + + S P +  +P +N+ Q+  + ++E  + ++  ++    E++  A + E+
Sbjct: 123 TNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAMSETQLPDVERHR-ADEAEI 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
             F ++    L+   Y  P EK+ K +  L  +  R      E+  + G++
Sbjct: 182 EQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHGLL 230


>gi|84489842|ref|YP_448074.1| rRNA methylase [Methanosphaera stadtmanae DSM 3091]
 gi|84373161|gb|ABC57431.1| predicted rRNA methylase [Methanosphaera stadtmanae DSM 3091]
          Length = 238

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V+P+   NIG +AR M NF L +L L+NP        A   + +A  ++    ++  L
Sbjct: 6   VFVEPKTSGNIGFLARTMKNFGLKKLVLINP--CKLENDAYYQAMHARELVQDAMIYDTL 63

Query: 78  KEAIAD--LHFIYATT--ARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +E I D  +  I  TT  A    N K + + P E    L + +    N+ ++FGRE  GL
Sbjct: 64  EEFIEDKKITSIVGTTGTAGGSYNIKRIPITPDE----LGKTMHVNGNIALLFGREGDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            N+EI   + +++ P +  +P +NI+ A  ++ +E  +N
Sbjct: 120 NNQEIEQCDILVTIPTSDEYPIMNITHAAAIIFYEIFKN 158


>gi|304314187|ref|YP_003849334.1| rRNA methylase [Methanothermobacter marburgensis str. Marburg]
 gi|302587646|gb|ADL58021.1| predicted rRNA methylase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 240

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 15/158 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++ V+P+   N+G +ARAM NF L  L L+NP      ++A   + +A  +++   ++  
Sbjct: 13  VVFVEPETPGNVGFLARAMKNFGLQNLILINP--CSLEDEAYYQAMHARDLVEDAIIYQT 70

Query: 77  LKEAIADLH--FIYATTARNRNNF---KSVLAPKEAAIVLN--ERIFSGQNVGIIFGRER 129
           L E I +L   F+  TT     ++   +  L P + A  +N   R F      I+FGRE 
Sbjct: 71  LDEMIENLEPDFLVGTTGVPGGSYNVDRIPLRPSQLASAINPSSRTF------ILFGREG 124

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            GL+N E+ L + ++S P +  +P +NI+ A  ++ +E
Sbjct: 125 DGLSNRELGLCDMVVSIPTDREYPIMNITHAAAIIFYE 162


>gi|330814239|ref|YP_004358478.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487334|gb|AEA81739.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 126

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 8/130 (6%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FG E  GL+NE++  +N ++  P +  + SLN+S AV ++ +    N   S +K +   
Sbjct: 1   MFGPENAGLSNEDLISANYLLKIPSDAKYESLNLSHAVSVVAY----NLYTSKQKKIIYN 56

Query: 184 NTPAT----KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
           NT  +    K +L  F D+L  +LE+  +FRP+EKK+ M+  + +IF +  L + E+  L
Sbjct: 57  NTDKSEIVGKSDLFKFYDFLIGNLEKTRFFRPIEKKEFMVKSIKNIFSQQPLTKRELKTL 116

Query: 240 RGIVSTLDKF 249
            GI S+L K+
Sbjct: 117 MGIFSSLKKY 126


>gi|153004019|ref|YP_001378344.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152027592|gb|ABS25360.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 21/235 (8%)

Query: 35  MWNFNLTQLRLVNPRDGW--PSEKARSSSANADC-------------VIDSVRVFSNLKE 79
           M NF L++L +V P   W  P       +A  D              V++   + ++L+ 
Sbjct: 1   MKNFGLSRLAIVAP-PSWAGPPRSGGPGTAQEDVLARARRLARRASDVLEGAEIHADLRG 59

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A+    ++  TT+R     +  L P E A  +  R   G+ V ++FG+ER GL++ E+ L
Sbjct: 60  ALGPAVWVCGTTSREVEG-RPRLDPGELAEEVLRRSAHGE-VAVVFGQERRGLSDAELEL 117

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
             A+ S P  P + S+N++Q+V ++ +E      V +      +        L +  + L
Sbjct: 118 CQAVCSIPTAPAYDSMNLAQSVAVLAYEIGRPRQVRAPAPAAAEPA--RHATLEALWERL 175

Query: 200 EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           +  L E GY  P +  + +L DL  +  R E  + EV L+   V  L++  R+ +
Sbjct: 176 QALLGEAGYLNP-QNPEHILADLRRLLARAEPTQREVELVLAAVRALERKLRERA 229


>gi|326317886|ref|YP_004235558.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374722|gb|ADX46991.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 277

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 41/273 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSVR 72
            IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+++ R
Sbjct: 5   FILIQTSHAGNVGAAARAMKTMGFGDLVLVAPR--WPNVLRREETIQRASGALDVLENAR 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE------------AAIVLNERIFSGQN 120
           + + L EA+  +  + AT    R+      +P+E            A   L E    G  
Sbjct: 63  IVATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLVRRQSADAGHPLAELALEGGV 122

Query: 121 VGI----------------------IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
             +                      +FG ER+G+ NE++   +  +S P NP F SLN+ 
Sbjct: 123 APVPPTDTDPASAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLG 182

Query: 159 QAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
            A+ ++ +E          ++    + PA   ++   L + E +L + G+  P    KK+
Sbjct: 183 AAIQVIAYEWRLALGGFPVRDAAPASAPADAAQVAGMLAHWERALVDIGFLDPA-APKKL 241

Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +  L  +F R +   EE+ +LRG+   + + ++
Sbjct: 242 MPRLNQLFNRAQPTPEEIHILRGVAKAMSEAAQ 274


>gi|159473264|ref|XP_001694759.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276571|gb|EDP02343.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 324

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 22/171 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVIDSV 71
           ++LV P+   NIG VARA  NF    L +V PR      GW  E  +   A  D V+D  
Sbjct: 28  VVLVAPKHEANIGAVARAAANFECLNLYIVAPRCDGAAAGWTGEARKV--ACGDSVLDRA 85

Query: 72  RVFSNLKEAIAD----LHFIYATTARNRNN-----------FKSVLAPKEAAIVLNERIF 116
            V   L++A+AD    + F   T A  R +           F   L P   A+  +    
Sbjct: 86  VVVDTLEQALADTSSSIGFTRRTGAARRTHASLGHLLAEFPFALPLQPPPVAVPTSAAAA 145

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 ++FGRE  GLT  E+ L +   + P   + PS+N+S AV  ++ E
Sbjct: 146 GPCATALVFGREESGLTEAELRLCSYASAIPTGRVQPSMNLSHAVAAVLAE 196


>gi|292657019|ref|YP_003536916.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
           DS2]
 gi|291371341|gb|ADE03568.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
           DS2]
          Length = 275

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 1/148 (0%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           +P+   N+G +ARAM NF +  LRLV+P    P  +A   + +A   +      + L+E 
Sbjct: 37  EPETPGNVGTIARAMKNFGIYDLRLVDPPPLDPDGEAYGFAGHAREDVLPNATETTLEEV 96

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIAL 139
           + + H +  T   + ++ + V  P +  + + + + S +    ++FGRE  GL NEE+A+
Sbjct: 97  VEEFHTVGTTAVSHEDSTRHVRYPFKTPVEIADSLESVETKTALVFGREGTGLDNEELAM 156

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWE 167
            + +   P +  +P LN+ QA  L+++E
Sbjct: 157 LDEVCCIPADDRYPVLNLGQAATLLMYE 184


>gi|167720292|ref|ZP_02403528.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei DM98]
          Length = 192

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 5/148 (3%)

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           LAP+ A     +++ +G ++ ++FG ER GL+NE +   +AI   P NP + SLN++QAV
Sbjct: 8   LAPRAAVASALQQVRTG-DIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAV 66

Query: 162 LLMVWECMENSIVSSEKNVKEQ---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
            ++ +E     +   E  V       T A   E+     +LE +L    +  P    KK+
Sbjct: 67  QVLAYELRVALLEDDEAAVPPDAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKL 125

Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +  L  +F R  L REEV ++RGI   +
Sbjct: 126 MPRLRRLFARTGLEREEVNIVRGIAKHI 153


>gi|299136114|ref|ZP_07029298.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
 gi|298602238|gb|EFI58392.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
          Length = 270

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--------SSSANADCV 67
            ++LV  +   NIG  ARAM +F    LR+VN     P E A+         S+  A  V
Sbjct: 14  TVVLVGARNPSNIGAAARAMQDFGFRDLRIVNDY-AAPFEAAQLEDSQQNVKSAVGAASV 72

Query: 68  IDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAA-IVLNE-RIFSG----QN 120
           +   R +S+L EAIAD   I  TTA   R+  + V+A ++AA  +L + R  +     Q 
Sbjct: 73  MAEARRYSSLAEAIADCTLIVGTTAIGERDVRREVVALQQAAPTMLGQLRTLTAADHPQQ 132

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSS 176
           V ++FG E+ GLTNE+++  + + + P+         S+N+ Q+V + ++E        S
Sbjct: 133 VALLFGSEKTGLTNEQLSHCSLLTTIPMFAPEAARHLSMNLGQSVAVCLYELTREGFEGS 192

Query: 177 EK--NVKEQNTPATKGELLS--FLDYLEISLEERGYFR 210
           ++   + E    A   E L+   LD L  +    GY R
Sbjct: 193 KELPVLHEATATAEDRERLTQLLLDVLHAT----GYSR 226


>gi|167044726|gb|ABZ09396.1| putative SpoU rRNA methylase family protein [uncultured marine
           microorganism HF4000_APKG7N23]
          Length = 209

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 22/184 (11%)

Query: 35  MWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYAT 90
           M NF +  L LV       DG+    ARS S     +++++  F  L+EA+AD     AT
Sbjct: 1   MVNFGIDDLALVKGCEIDDDGY----ARSKSGKP--ILENLSRFDTLEEALADCDVAIAT 54

Query: 91  TA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           +      ++  F++  + KE   ++ ER    +   +IFGRE +GL   E+AL    I+ 
Sbjct: 55  SGIKPEGDKRWFRAPKSIKELPDLIKER----EKPALIFGRENYGLYRGELALCEVTITI 110

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEER 206
           P NP FP LN+S AV ++++E   +    + KN K++   + + E    +D +   LEE 
Sbjct: 111 PTNPKFPILNLSHAVGIVLYEIYRD---GNHKNPKKRKAVSNE-EFERLVDRIMDLLEET 166

Query: 207 GYFR 210
            Y R
Sbjct: 167 SYPR 170


>gi|116620037|ref|YP_822193.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223199|gb|ABJ81908.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 252

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 13/219 (5%)

Query: 1   MTPYAPQL-----QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           M P+ P L      N      ++LV  +   NIG  ARAM NF  ++L +V P D     
Sbjct: 1   MPPFGPALPLNINANWKNNLRVVLVSTRNPLNIGAAARAMANFGFSRLGVVAPYD-VAFR 59

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +ARS+   A  ++     F ++  A+AD   +  TT+      +  +   E    L  + 
Sbjct: 60  EARSAVGAAP-LLQKAEEFPSVAAAVADCRLVVGTTSVGHRELQHPIRRLEYGARLMLKG 118

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SI 173
                V ++FG E++GL+NE+++  + ++  P      S+N+ QAV L ++E   +  + 
Sbjct: 119 LPAAPVALLFGSEKFGLSNEDLSHCHWLMRIPTVGQDLSMNLGQAVALCLYELARDPKAA 178

Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212
           ++S + ++  N     GEL      L   L   GY  PV
Sbjct: 179 LASPEKIRSANA----GELEQITTRLLEVLNRSGYVNPV 213


>gi|289804368|ref|ZP_06534997.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 125

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGLTN 134
           L EA+A    +  T+AR+R     +L P+E  +   + +    N  V ++FGRER GLTN
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECGL---KSVAEAANTPVALVFGRERVGLTN 122

Query: 135 EEI 137
           +E+
Sbjct: 123 DEL 125


>gi|255514101|gb|EET90364.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 234

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 112/231 (48%), Gaps = 11/231 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +  V+P+   N+G  AR + NF + ++ LVNP+  +  + A   S +A  +I++  +  +
Sbjct: 7   VAFVEPRYQINLGYEARVLKNFEIRKMYLVNPKCKFNGKNAIKYSKHAHDLIENAAILKD 66

Query: 77  LKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L   +    F+  TTA   ++R  F +V+   E    +  +  S +N+ ++ GR+  GL 
Sbjct: 67  L-NGVTRNSFVVGTTALWRKSRKYFDNVMTLPEFEEYIRGK--SIENMTLLIGRDNTGLN 123

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           +EE+   N+I+  P +  +P+LNIS A+ ++++        S  + + E    ++   ++
Sbjct: 124 SEELFQCNSIVFIPTSQRYPTLNISHALAILLYALTAQKPSSWPQEIGELYADSSDLRMI 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             L     S++   Y R  E  KK  +++    +R    ++E+  L    S
Sbjct: 184 KSL--FGASVDSNPYIRKKETVKKAFENM---LVRANPTKKEINALTAAFS 229


>gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
 gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
          Length = 237

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 19/231 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           +ILV  +   N+G + R   NF++ +L LV P+    S++ R  +AN    IDS  V+++
Sbjct: 4   VILVGTEGEINLGFIVRLCRNFDVDELILVKPQIDPFSDEVRRFAANGAIYIDSGKVKIY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----QNVGIIFGRER 129
            NL +A+  +     T++    +   ++     AI L E  F+       ++ ++FGRE 
Sbjct: 64  ENLDDALRGIGISGCTSSVIDVDGGDIV---RKAIELEE--FANIASKYSSIAVVFGRES 118

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLT EEI+  + ++    NP +P LN+S AV + ++   +   V  + ++ ++  PA +
Sbjct: 119 VGLTREEISKCDFLVHIASNPEYPVLNLSHAVAITLYMLYK---VLRKHSLFDRIEPAQE 175

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI-RPELMREEVFLL 239
            EL     Y++   E        EK+++    ++  FI R  L R EV LL
Sbjct: 176 NELRILEKYID---EIVNIVASDEKQRESFSLVFKRFIRRTTLSRAEVGLL 223


>gi|330836257|ref|YP_004410898.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748160|gb|AEC01516.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 257

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 9/155 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWPSEKARSSSANADCVIDSVRVF 74
           ++LV+PQ G NIG V RAM    L++L +     R  +  ++ R+ + +A  V ++    
Sbjct: 12  MVLVEPQDGANIGSVCRAMKTMGLSRLVIAGGKTRADYDDDRVRTLALHAADVWENCVWE 71

Query: 75  SNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWG 131
            +L+ A+A  +  + AT  R +    S + P +    L +RI S     V I+FGRE  G
Sbjct: 72  QSLESALATSILTVGATRRRGKYRKFSFINPSQ----LADRISSTPAGPVSIVFGREANG 127

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           LT++E+   + +++ P +  FPSLN++QAV ++ +
Sbjct: 128 LTDDEVGQCSLVVTIPTSDAFPSLNLAQAVQIIAY 162


>gi|222479804|ref|YP_002566041.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452706|gb|ACM56971.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 290

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 5/154 (3%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIADL 84
           N+G +ARAM NF L+ L+LV+P +     +A   + +A  D + ++  V     E +A+ 
Sbjct: 51  NVGTIARAMKNFGLSDLKLVDPPELKEDGEAYGFAGHAREDVLPNADEV--TFDEIVANY 108

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAI 143
           H +  T     ++      P +  + L E + +      I+FGRE  GL NEE++  + +
Sbjct: 109 HTVGTTAITGEDDQSHERFPFKTPVELRESLKTVDAPTAIVFGREGRGLNNEELSQLDEV 168

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            S P +  +P LN+ QA  ++++E  + ++  ++
Sbjct: 169 CSIPADDDYPVLNLGQAATVLLYELRDLTVDETQ 202


>gi|20093957|ref|NP_613804.1| rRNA methylase [Methanopyrus kandleri AV19]
 gi|19886913|gb|AAM01734.1| rRNA methylase [Methanopyrus kandleri AV19]
          Length = 234

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 6/152 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P+   NIG VAR M NF + +L LV PR     E A + + +A  ++++  + + 
Sbjct: 5   VVLVEPKYDGNIGHVARVMKNFGVKELFLVRPRSEL-GEVAIARAMHALDLLENAVIVNT 63

Query: 77  LKEAIADLHFIYATTARNRNN-FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+EAI D+    ATTA   +   ++ + P E    + E     + + ++FG E  GL   
Sbjct: 64  LEEAIEDVEAAIATTAVLASTPARNPMMPWE----VREAFSDYEKIAVVFGPEDRGLRTW 119

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E+ L +A +  P +  + S+N+S +V ++++E
Sbjct: 120 EVELCDATLHIPTSEEYRSMNLSHSVAVVLYE 151


>gi|282163400|ref|YP_003355785.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
 gi|282155714|dbj|BAI60802.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
          Length = 235

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 28/249 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF 74
           ++L++P    N+G V R+M NF    + LV P   D +    A++ +++A  ++ + R+ 
Sbjct: 6   VVLIEPLYEGNVGSVCRSMKNFGFADIVLVKPCRLDNF----AKAMASHAQDLLATARIV 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLA-----PKEAAIVLNERIFSGQNVGIIFGRER 129
               EA+     + ATT +   +  S +      PKE   +L ++  SG    +IFGRE 
Sbjct: 62  DTFDEALEGADLLVATTGKPGAHINSHVRYPFYNPKELRTMLEDK--SG-TAALIFGRED 118

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL NE +   + +   P +  +P +N++QAV + ++E             K  N     
Sbjct: 119 AGLPNEIVERCDIVAYIPTSKDYPIMNLAQAVSIFLYEL---------SGFKGGNVALAD 169

Query: 190 GELLSFLDYLEIS--LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            E +  L Y   S  L++  Y  P  KK K +  L  I+ R  L R E + + G++  + 
Sbjct: 170 REDVDRL-YENYSNLLDDINY--PEHKKDKTMMMLRRIYGRAMLNRREYYTMMGVLHEIG 226

Query: 248 KFSRQSSRR 256
               ++ +R
Sbjct: 227 LALERAKKR 235


>gi|255084313|ref|XP_002508731.1| predicted protein [Micromonas sp. RCC299]
 gi|226524008|gb|ACO69989.1| predicted protein [Micromonas sp. RCC299]
          Length = 506

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 91/230 (39%), Gaps = 80/230 (34%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------RDGWPSEKARSS--- 60
             +L  PQ  +N+G VAR M NF +  LR+ +P             D  P++ A SS   
Sbjct: 81  CFVLCGPQGPQNVGSVARVMQNFGIYDLRITDPGPFVLAGGGTRDEDATPADGASSSGGI 140

Query: 61  ------------------------------------------------SANADCVIDSVR 72
                                                           +  AD ++   +
Sbjct: 141 NSGAALGPDGLGSDLPEALRPTRIDSGGNPADDPASPAPPLCDEAYRFACAADWLLADAK 200

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 EAI+D  F+ ATTAR R N   V A + AA +L +    G+ V ++FG ER GL
Sbjct: 201 RCDTALEAISDCTFVMATTARPRGNVPLVTA-RVAAEMLAKEAKRGK-VAVLFGNERTGL 258

Query: 133 TNEEIALSNAIISFP--------------VNPLFP-SLNISQAVLLMVWE 167
           TNEE+A ++A ++ P                   P SLN+SQAV ++ +E
Sbjct: 259 TNEELAQAHACVAIPTAGQGTLCRRSLKYTGGTGPTSLNLSQAVGVLAYE 308


>gi|322433937|ref|YP_004216149.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
 gi|321161664|gb|ADW67369.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
          Length = 262

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 11/149 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDSVRVFSNLKEAIADLH 85
           NIG VARAM +     LR+VN    +P   A + SA +A  V+ +    +++ EA+AD  
Sbjct: 29  NIGAVARAMHDLGFAHLRIVN---DFPVPFAAAKSAVDASSVLAAATEPASVAEAVADCT 85

Query: 86  FIYATTARNRNNFKSVLAP-KEAAIVLNE--RIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +  TTA      +  L    +AA  + +  R      + ++FG E+ GL+NEE++  +A
Sbjct: 86  LVLGTTAVGERALQHPLQTLNQAAATVRQTLRTDPAAKIALLFGSEKTGLSNEELSHCHA 145

Query: 143 IISFPVNPLFP----SLNISQAVLLMVWE 167
           +++ P+N L      S+N+ QA  + +++
Sbjct: 146 LLTIPMNTLTADHHLSMNLGQAAAVCLYQ 174


>gi|197121584|ref|YP_002133535.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196171433|gb|ACG72406.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 269

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 114/264 (43%), Gaps = 24/264 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI------ 68
           ++L  PQ  +N+G  AR M NF L++L +V P    G P      +    D V+      
Sbjct: 8   LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAITARDDVLARARRM 67

Query: 69  --------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                   D   +  +L+ AI    ++  TT+R     +  L P+  A  L  R   G+ 
Sbjct: 68  ARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSADGE- 125

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++FG ER GL++ E+ L  A+ + P    + S+N++QAV ++ +E    +        
Sbjct: 126 VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPPGAAPA 185

Query: 181 KEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
           +       + PA    + +     +  L   GY  P +  + +L D   +  R +  + E
Sbjct: 186 EAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQRE 244

Query: 236 VFLLRGIVSTLDKFSRQSSRRNNV 259
           V LL G + +LD+  R   R +  
Sbjct: 245 VELLLGALRSLDRVLRLPPRGDGT 268


>gi|110668383|ref|YP_658194.1| tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790]
 gi|109626130|emb|CAJ52582.1| probable tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 332

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFSNLKE 79
           +P+   NIG +ARAM NF LT+L LV+P       +A   + +A + V+ + +  S    
Sbjct: 14  EPETPGNIGTIARAMKNFGLTELLLVDPPPIPAGSEAYGFAGHAREDVLPNAKTVS-FDA 72

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIA 138
            +   H I  T     ++   V  P +    +++ + + +    ++FGRE  GLTN+E+ 
Sbjct: 73  VVNKYHTIGTTAITAEDSRHHVRFPYKTPAEISDDLKTVETETALVFGREGTGLTNDELT 132

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             + + S P N  +P LN+ QA  ++++E
Sbjct: 133 SLDEVCSIPANESYPVLNLGQAATVLLYE 161


>gi|303286179|ref|XP_003062379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455896|gb|EEH53198.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 464

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 53/200 (26%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-------------------------RD 50
            ++L  PQ  +NIG +AR + NF +  LR+V P                         R 
Sbjct: 93  CVVLCRPQGPQNIGGIARVLNNFGIADLRIVTPEPSALAPPYDAADATTDKATHPAETRA 152

Query: 51  GWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
             P +E+A   + +AD ++   R   +  EA++D  F+ ATTAR R N   +L  + A  
Sbjct: 153 TAPLAEEAHKFAVHADWLLRDARRCVDAAEALSDCVFVAATTARARENLP-ILDARSAV- 210

Query: 110 VLNERI---FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF-------------- 152
              ER+    S   V I+FG E  GLTNEE++L+N  +  P                   
Sbjct: 211 ---ERVKVAASEGKVAIVFGNEATGLTNEELSLANVGVMIPTAGRAGAGAGGRRGEKRYT 267

Query: 153 -----PSLNISQAVLLMVWE 167
                 SLN+S AV ++ +E
Sbjct: 268 GGAGPTSLNLSHAVGVVAYE 287


>gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 244

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 2/153 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L   +  +N+G VAR M NF   +L L +P   +    A   +   + V++ + V  
Sbjct: 8   TVVLHQTRSPDNLGAVARVMANFGFFRLILSDPAT-YAFRGAERLAVKGERVLERMAVAR 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+++  +   TT+R +   +  L P++A   L E    G+ V ++ G E+ GL++ 
Sbjct: 67  ELPEALSECVYAVGTTSRTQLKGRIPLTPEQAVRRLAEESARGR-VALVLGGEQRGLSDA 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           E+A+   ++  P + + PS+N++QA  ++++ C
Sbjct: 126 ELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLC 158


>gi|328946998|ref|YP_004364335.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328447322|gb|AEB13038.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 242

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 11/205 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VI+L  P+   NIG   RAM N  + +LR+V  ++    +K    + +A  + D+   FS
Sbjct: 7   VIVLSRPEEPRNIGAACRAMANNGIHKLRIVGKKEEIDLDKVHVLAIHASYIFDNAEYFS 66

Query: 76  NLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRERW 130
           ++ EA +D +     T  R +     +L P+E A   N RI      G  V ++FG ER 
Sbjct: 67  SITEACSDCVCSCGTTRRRGKKRKGKLLLPEEFAKTAN-RISGTEKKGGKVAVVFGNERT 125

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL + EI      ++ P +  F SLN+S AV +M +         +EKN K   TP    
Sbjct: 126 GLDDNEILECEMGVTIPSSEEFGSLNLSHAVQIMCYTLFR----YNEKN-KIGYTPIDSK 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKK 215
            L   +  +  +L++ G+F    +K
Sbjct: 181 RLKKTVTTIADNLQKIGFFSVTGRK 205


>gi|255311931|pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein
           From Neisseria Gonorrhoeae
          Length = 223

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 22/204 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLV----------------NPRD----GWPSEK 56
           IIL       NIG  ARA     L +L +V                NP D      P E 
Sbjct: 20  IILTRTSHPANIGSAARAXKTXGLHRLTIVTPNLXATPXTENPPVFNPDDVQSFALPEES 79

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
              +S  AD V+ +  + + L EA+AD     A T+R R     +  P++    L +   
Sbjct: 80  FILASGAAD-VLHNAEIVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAAN 138

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G+ V ++FG E +GL+ EE+   N + +   NP + SLN++QAV ++ +E    +  S 
Sbjct: 139 RGEKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQVVCYEIFSQTD-SP 197

Query: 177 EKNVKEQNTPATKGELLSFLDYLE 200
             ++++++  AT  ++   L + E
Sbjct: 198 XTHLQQEDHAATHEQIKGXLAHXE 221


>gi|41615173|ref|NP_963671.1| hypothetical protein NEQ384 [Nanoarchaeum equitans Kin4-M]
 gi|40068897|gb|AAR39232.1| NEQ384 [Nanoarchaeum equitans Kin4-M]
          Length = 232

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 16/165 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSV--R 72
           ++  V+P+  +NIG +AR   NFN   L L+NP+ D +  EKA   + +A  ++      
Sbjct: 4   IVFFVEPEKVDNIGAMARVCKNFN-ADLYLINPKVDNY--EKAFVVAKHAQDLLQKAIEN 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNV--GIIFGR 127
             +++ EA   +     TT +  N +   +S L P E A    ER F+  ++  GI  GR
Sbjct: 61  KLNSIDEAKELVDISVGTTGKIANEYNVLRSPLKPWELA----ER-FANSDIKLGIFIGR 115

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GLTNEE++  + I++ P N  +P LN + A  ++++E  ++S
Sbjct: 116 ESIGLTNEELSKMDFIVTIPANKEYPILNATHATAIILYELFKHS 160


>gi|220916347|ref|YP_002491651.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954201|gb|ACL64585.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 269

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 24/264 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANA----------- 64
           ++L  PQ  +N+G  AR M NF L++L +V P   G P     + +  A           
Sbjct: 8   LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAVTARDDVLARARRM 67

Query: 65  ----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                 ++D   +  +L+ AI    ++  TT+R     +  L P+  A  L  R   G+ 
Sbjct: 68  ARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSEQGE- 125

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++FG ER GL++ E+ L  A+ + P    + S+N++QAV ++ +E    +  +     
Sbjct: 126 VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPAGAAPA 185

Query: 181 KEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
           +       + PA    + +     +  L   GY  P +  + +L D   +  R +  + E
Sbjct: 186 EAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQRE 244

Query: 236 VFLLRGIVSTLDKFSRQSSRRNNV 259
           V LL G + +L++  R   R +  
Sbjct: 245 VELLLGALRSLERALRLPPRGDGT 268


>gi|319943416|ref|ZP_08017698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
           mirabilis ATCC 51599]
 gi|319743231|gb|EFV95636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
           mirabilis ATCC 51599]
          Length = 324

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 108/286 (37%), Gaps = 53/286 (18%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +LV P L  NIG   RA+    +  L +V PRD    E A + +  A       +V S  
Sbjct: 40  VLVSPSLSANIGSAVRALTTMGIPDLMVVAPRDAAFREDAGALALAAGAEARLAQVGSRP 99

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLT 133
           +L  A+AD     A +A  R        P      +   + +GQ   V  +FG ER GL 
Sbjct: 100 SLDAALADCQLAVAVSAEGREFGPPPAFPGPLCAEVLGMLSAGQVQRVAFVFGTERTGLG 159

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-------------------------- 167
             E+A     ++ P +  + SLN++QAV ++ +                           
Sbjct: 160 TAEMARCQRWLTIPADADYSSLNLAQAVQIVAFSLRRAVLEREAARVMTRGESASGGAPS 219

Query: 168 --------------CMENSIVSSEKNVKEQNTPATK-GELLSFLD-------YLEISLEE 205
                         C      S    V+   +   + GE L+ L        + E SL  
Sbjct: 220 AELARAVDGYPTDVCGREDAASPAAGVRHDGSRGLRSGERLADLGAVEGLVRHAESSLAA 279

Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            G   P  + ++++  L  +F R  L   EV LLRGI   +D+ ++
Sbjct: 280 LGTLDPA-RPRRLMARLRHLFGRTSLTAAEVDLLRGICRDIDRRTK 324


>gi|294140922|ref|YP_003556900.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293327391|dbj|BAJ02122.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
           DSS12]
          Length = 230

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 6/207 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V +LV+P    N+G  ARA+      QL LVN       E A   +  A  +++   V  
Sbjct: 4   VFVLVEPTRAANVGAAARAIKTMGFEQLILVNSSLHLEKE-AHWVAHGATDILERTLVVD 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++ +  A    + ATTAR R   +  L P E    L E+  S + + ++FGRE  GL+N 
Sbjct: 63  SVADIRAQYDQLIATTARERGTPRQYLTPDELKGTLIEQSDSVKKIALLFGRESSGLSNS 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L +     P+   +PSLN++QAV++  +   E +    +K ++ Q     +G+L + 
Sbjct: 123 ELELCDVFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLKQKQIQPQ-----EGQLQAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDL 222
            +  ++ L+E G    V+  + +LD +
Sbjct: 178 KNRTQLLLQELGTQDDVKLSRWLLDGM 204


>gi|323159303|gb|EFZ45289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein
           [Escherichia coli E128010]
          Length = 148

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--K 178
           V ++FGRER GLTNEE+   +  ++   NP + SLN++ AV ++ +E     + + E  +
Sbjct: 11  VALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGE 70

Query: 179 NVKEQNTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
            V+ + TP     +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ 
Sbjct: 71  QVEHEETPYPLVDDLERFYGHLEQTLLATGFIRE-NHPGQVMNKLRRLFTRARPESQELN 129

Query: 238 LLRGIVSTLDK 248
           +LRGI++++++
Sbjct: 130 ILRGILASIEQ 140


>gi|258619944|ref|ZP_05714984.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
 gi|258587677|gb|EEW12386.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
          Length = 135

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 8/128 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  +++ ++F  
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQIDAQAIALAAGASEIALNA-QIFPT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRERWGLT 133
           L+ A+AD   +  T+AR+R     +L P++      E++    S   V ++FGRER GLT
Sbjct: 66  LEAAVADCGLVVGTSARSRTLDWPMLEPRQC----GEKLIAEASQHTVAMVFGRERTGLT 121

Query: 134 NEEIALSN 141
           N+E+ L +
Sbjct: 122 NDELQLCH 129


>gi|167621090|ref|ZP_02389721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis Bt4]
          Length = 174

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           ++  +FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  
Sbjct: 7   DIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPA 66

Query: 180 VKEQ---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
                     A   E+     +LE +L    +  P    KK++  L  +F R  L REEV
Sbjct: 67  TPPDAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEV 125

Query: 237 FLLRGIVSTL 246
            ++RGI   +
Sbjct: 126 NIVRGIAKHI 135


>gi|302348245|ref|YP_003815883.1| rRNA methylase [Acidilobus saccharovorans 345-15]
 gi|302328657|gb|ADL18852.1| rRNA methylase [Acidilobus saccharovorans 345-15]
          Length = 245

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 79/143 (55%), Gaps = 7/143 (4%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R   NF + +L LV+P     +E  R ++  +D    +  V  +LKEA+ D+  
Sbjct: 17  NLGYIFRLSENFEVDELYLVSP-TASVAESLRWAAKASDMAWKAT-VVGSLKEALRDVEL 74

Query: 87  IYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
              T+  +  R+  +S ++P++AA ++   I     V ++ GRE  GLT +E+A  + + 
Sbjct: 75  SVCTSDESSARDLLRSPVSPEQAAELM---IARKGTVALVVGRESVGLTRDELAQCDLLC 131

Query: 145 SFPVNPLFPSLNISQAVLLMVWE 167
           + P +P + +LN+S A  ++++E
Sbjct: 132 TIPASPKYTALNVSNATAVLLYE 154


>gi|67478105|ref|XP_654474.1| RNA methyltransferase, TrmH family [Entamoeba histolytica
           HM-1:IMSS]
 gi|56471520|gb|EAL49084.1| RNA methyltransferase, TrmH family, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 350

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 1   MTPYAPQLQNSAK-GPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
           +TP   ++Q+    G +   +ILV P   +NIG V R   N+ + +L +VNP      E 
Sbjct: 79  ITPEKEKVQDERTFGDIKMSVILVRPMHEDNIGAVGRLCANYGINKLYIVNPLCEIGEES 138

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNE 113
            + S  + +  I++  +  +L+E   D   +   TAR    + N + ++  +EA  +L+ 
Sbjct: 139 IKVSR-HGNGYIENAVICKSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLS- 196

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
               G  VG++FG E  GL  EE    + +    +   +P LN+S AV
Sbjct: 197 -TMKG-CVGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAV 242


>gi|308799711|ref|XP_003074636.1| unnamed protein product [Ostreococcus tauri]
 gi|116000807|emb|CAL50487.1| unnamed protein product [Ostreococcus tauri]
          Length = 384

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 49/186 (26%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNPR-----DGWPSEKAR 58
           P+L+N       +L  PQ   N+G  ARAM NF + +L+L  V P      D   +   R
Sbjct: 53  PELENV----RFVLCAPQGAANVGACARAMQNFGVYELKLCEVGPNVLERDDAGETAATR 108

Query: 59  SSSANADCVID------------------------------------SVRVFSNLKEAIA 82
            + ++A+ ++D                                         ++++ A+A
Sbjct: 109 GTESDAERILDEASEGEGKTPERAANQTLPLSAEALRYACAADWMLEDAERCADVEAALA 168

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F+ ATTAR R     ++  +EAA  + E    G+ V ++FG ER GLTNEE+A ++A
Sbjct: 169 GCTFVLATTARPRTGTP-LMTAREAAKKVAEEAKRGK-VAVLFGNERTGLTNEELAWASA 226

Query: 143 IISFPV 148
            +  P 
Sbjct: 227 AVVVPT 232


>gi|326566609|gb|EGE16752.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
          Length = 235

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 24/122 (19%)

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------------- 110
           A  ++D   +  ++K AI D   I+A +AR+R   + VL P  AA V             
Sbjct: 2   AGILLDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNT 61

Query: 111 -------LNERIFSGQN----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
                  +N+      N    + I+FGRE  GLTNEE++L++  I  P N  +P LN++ 
Sbjct: 62  LATSLDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVAS 121

Query: 160 AV 161
           A+
Sbjct: 122 AI 123


>gi|167380896|ref|XP_001735498.1| nucleolar phosphoprotein [Entamoeba dispar SAW760]
 gi|165902498|gb|EDR28302.1| nucleolar phosphoprotein, putative [Entamoeba dispar SAW760]
          Length = 350

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 16/230 (6%)

Query: 1   MTPYAPQLQNSAK-GPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
           +TP   ++Q+    G +   ++LV P   +NIG V R   N+ + +L +VNP      E 
Sbjct: 79  ITPEKEKVQDERTFGDIKISVVLVRPMHEDNIGAVGRLCANYGINKLYIVNPLCKIGEES 138

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNE 113
            + S  + +  I+   + ++L+E   D   +   TAR    + N + ++  +EA  +L+ 
Sbjct: 139 IKVSR-HGNGYIEGAVICNSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLS- 196

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
               G  +G++FG E  GL  EE    + +    +   +P LN+S AV +     M   +
Sbjct: 197 -TMKG-CLGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGI-ALNYMHMRL 253

Query: 174 VSSEKNVKE---QNTPATKGELL-SFLDYLEISLEERGYFRPVEKKKKML 219
                 V E   +N    KGELL  + + L   + E+     VE  KK+L
Sbjct: 254 RDGGDLVPEGCKENIAKEKGELLEQWKEILHSVMNEQREIGAVESMKKLL 303


>gi|145350500|ref|XP_001419642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579874|gb|ABO97935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 344

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 15/146 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNL-TQLRLVNPR--------DGWPS----EKARSSSANA 64
           +L  P+   N+G  AR + NF+L + LR+V P         DG  +    E A   + +A
Sbjct: 4   VLCAPEGPLNVGAAARVIQNFSLPSSLRVVRPSASVLRDDDDGASAPRLHEDAYKFAVHA 63

Query: 65  DCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             ++D       ++ EA+A+   + ATTAR R N   +L    A   + + I  G    I
Sbjct: 64  KWMLDDCCARGESVLEAVAEASLVVATTARPRENLP-LLTLGAACEKMRDEIARGGKCAI 122

Query: 124 IFGRERWGLTNEEIALSNAIISFPVN 149
           +FG ER GLTNEE+ L+   +S P +
Sbjct: 123 LFGNERTGLTNEELELAEFGVSIPTS 148


>gi|115372736|ref|ZP_01460042.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370217|gb|EAU69146.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 218

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 71/134 (52%), Gaps = 2/134 (1%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M NF   +L L +P   +    A   +   + V++ + V   L EA+++  +   TT+R 
Sbjct: 1   MANFGFFRLILSDPAT-YAFRGAERLAVKGERVLERMAVARELPEALSECVYAVGTTSRT 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           +   +  L P++A   L E    G+ V ++ G E+ GL++ E+A+   ++  P + + PS
Sbjct: 60  QLKGRIPLTPEQAVRRLAEESARGR-VALVLGGEQRGLSDAELAVCADVLVIPTSEVQPS 118

Query: 155 LNISQAVLLMVWEC 168
           +N++QA  ++++ C
Sbjct: 119 MNLAQAAGVLLYLC 132


>gi|308808149|ref|XP_003081385.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
 gi|116059847|emb|CAL55554.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
          Length = 666

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----DGWPSEKARSSSANA-DCVID- 69
           V +L  P+   N+G  +RAM NF    LRLV+PR     G    +AR  +A   D V++ 
Sbjct: 50  VFVLCRPEGAINVGTASRAMHNFGANDLRLVDPRCVDAGGRIDAEARMFAARGLDAVLER 109

Query: 70  --SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                  +++  A  D   + AT  R R N   V++ +E A  + E +  G  V ++FG 
Sbjct: 110 DGRTTTTTSVSAATMDATLVVATCPRPRENVP-VVSLREGARRVAEEVARGGRVAVLFGT 168

Query: 128 ERWGLTNEEIALSNAIISFP 147
           E+ GL+N+E+  +   +  P
Sbjct: 169 EKSGLSNDEMEHAQFAVCVP 188


>gi|317050583|ref|YP_004111699.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316945667|gb|ADU65143.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 267

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 105/240 (43%), Gaps = 17/240 (7%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L N+ +GPV          N+G ++RAM N    QLR   P      +  R +  +    
Sbjct: 21  LLNNIEGPV----------NLGFISRAMANTGFAQLRFCGPVSADDPDVLRYAVHSGHLR 70

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            +  RV  ++      +  +   + R   +    +   +   ++ +   + + VG++FG 
Sbjct: 71  ENFTRV-EDIGGLCRAMDVVIGMSPRQPWSDGCDITLDQLPALVGQHTAAHKRVGLLFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNT 185
           E  GL N  ++     ++ P +  + S+N++QAVL+++WE   +  S V  + ++     
Sbjct: 130 EAHGLDNAALSHCRYRLALPTDSGYTSMNLAQAVLIVLWELHRHGASGVGIDPSMPAA-A 188

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PA+  E   FL+ L   LE   Y  P +    +  +L  +  + +    E+ LL G++ T
Sbjct: 189 PASMRE--QFLEKLRQYLELIDYLDP-QNPDHLWQELAIMIRKRDWSERELTLLMGLIHT 245


>gi|213580756|ref|ZP_03362582.1| tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 115

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + ++   
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           L EA+A    +  T+AR+R     +L P+E    L +R  SG+  G 
Sbjct: 66  LDEALAGCSLVVGTSARSRTLPWPMLDPRECG--LKKRSGSGKYAGC 110


>gi|291287143|ref|YP_003503959.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884303|gb|ADD68003.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 240

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  ++L   +   N+G +ARAM N   + L        +  E A   + +A  ++++  
Sbjct: 2   KGVNVLLSRLEGPVNLGFIARAMANTGFSSLSYTGTVP-YNHEDALKFAVHASDILENAY 60

Query: 73  VFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                +E I+    +   T R+    NN    L  +E    ++E + +G  VG++FG E 
Sbjct: 61  HPETFEELISTSDVVIGFTPRSPFSTNN----LPYEELKDFVSETVSTGLKVGLLFGNEA 116

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            GL N+E++     +S P +  + S+N++QAVL+ +W+
Sbjct: 117 SGLNNKELSACAHRVSLPTSADYISMNLAQAVLVSLWQ 154


>gi|308802576|ref|XP_003078601.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
 gi|116057054|emb|CAL51481.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
          Length = 232

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 11/170 (6%)

Query: 5   APQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           A  L N A G V ++   P++  N+G  AR+   F    LRLV P     S  A S++  
Sbjct: 49  ARALVNPALGDVAVVFCSPKIASNVGAFARSCAAFECVDLRLVTPACDAGSRAALSAAKG 108

Query: 64  ADCVI---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A  ++    S   F  L EA+       A       +    +   +   + +   F G +
Sbjct: 109 AQGLVRVASSSGTFDTLVEALVGCSSAVAFHPWPSGDVDGAVTFDDLEALADA--FPGGD 166

Query: 121 V-----GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V      ++FG E  GLT EEIA  +A+ + P+  L  SL+++ A ++ +
Sbjct: 167 VEGGKLALVFGNEADGLTKEEIAACDAVCTIPMGRLVESLSVTHAGVIAL 216


>gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 24/157 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
             DPQ   N+  V R    F + +L ++  P    P ++ +  S NAD  +D VR +S+ 
Sbjct: 52  FCDPQ---NVNAVLRTCEAFGIQELHVIEGPMK--PYDRNKKISQNADKWVD-VRRWSST 105

Query: 78  KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            E +A L      IYAT               E A  L+   F+G+ V ++FG E  G++
Sbjct: 106 GECLAHLKAEGFAIYATHL------------GEGARTLDALSFAGK-VALVFGNEHRGVS 152

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +E +ALS+A+   P++    SLN+S A  + + + +E
Sbjct: 153 DEAVALSDAVYVIPMHGFVQSLNVSVAAAISIAKAVE 189


>gi|145341114|ref|XP_001415660.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575883|gb|ABO93952.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 445

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 58/206 (28%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVN---------PRDGWPS-------------- 54
           ++  PQ   N+G  AR M NF +  L LV+          R G  +              
Sbjct: 68  VMCAPQGPANVGAAARVMQNFGIYDLALVDVGPFVLTTTTRSGDATREISDEASEGEGRA 127

Query: 55  ------------------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96
                             E+A   +  AD ++       + +EA+    F+ ATTAR R+
Sbjct: 128 PERASEVLGSEARTTPLCEEAMRYACAADWLLADAERCDDAEEALRGCSFVLATTARPRS 187

Query: 97  NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF---- 152
               ++  +EAA  + E    G+ V ++FG ER GLTN+E++ ++A ++ P         
Sbjct: 188 G-TPLMTAREAAERVREEAKRGK-VAVLFGNERTGLTNDELSWAHAAVAIPTAGAGKICR 245

Query: 153 -----------PSLNISQAVLLMVWE 167
                       SLN+S AV ++ +E
Sbjct: 246 KSLKYTGGTGPTSLNLSHAVGILAYE 271


>gi|119470463|ref|ZP_01613191.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonadales bacterium TW-7]
 gi|119446388|gb|EAW27664.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonadales bacterium TW-7]
          Length = 118

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+     NIG  ARAM    L++L LV+P     S  A + SA A  V+ +  +   
Sbjct: 8   VVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDSH-ASALSAGASDVLGNAVIVDK 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           L++AIAD      T+AR+R     ++ P+E    L     +G  V ++FGRE
Sbjct: 67  LEDAIADCALTIGTSARSRTLSWPMVEPRECGEKLVAEAENGP-VALVFGRE 117


>gi|302791677|ref|XP_002977605.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
 gi|300154975|gb|EFJ21609.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
          Length = 338

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 18/142 (12%)

Query: 28  IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDSVRVFSNLKEAIADLH 85
            G+  R +W        LV+P   + S++AR  + N  A  +++ V V   + EA+ +  
Sbjct: 45  CGIECRHVW--------LVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECL 96

Query: 86  FIYATTARNRNN--FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                T R+  +     V  PK            GQ + ++FGRE  GLTNEE+      
Sbjct: 97  MAIGFTRRDGRDRVVNEVPYPKLCIPA------KGQAIALVFGREDDGLTNEELLYCTHT 150

Query: 144 ISFPVNPLFPSLNISQAVLLMV 165
              P      SLN+S AV L +
Sbjct: 151 CRIPTTKWEGSLNVSHAVALAL 172


>gi|302786858|ref|XP_002975200.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
 gi|300157359|gb|EFJ23985.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
          Length = 338

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 42  QLRLVNPRDGWPSEKARSSSAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN-- 97
           Q+ LV+P   + S++AR  + N  A  +++ V V   + EA+ +       T R+  +  
Sbjct: 51  QVWLVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECLMAIGFTRRDGRDRV 110

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
              V  PK            GQ + ++FGRE  GLTNEE+         P      SLN+
Sbjct: 111 VNEVPYPKLCIPA------KGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNV 164

Query: 158 SQAVLLMV 165
           S AV L +
Sbjct: 165 SHAVALAL 172


>gi|168035469|ref|XP_001770232.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678449|gb|EDQ64907.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 287

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 21/151 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDSVRVF 74
           ++LV PQ   N+G V               NP+  +   +A++ +AN  +   ++ +RV 
Sbjct: 29  VVLVSPQHAGNVGSV---------------NPQCDFRGVEAQTMAANVTSRSKLEHIRVT 73

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L EA+ D       T   R+    +   + A + +        N+ I+FGRE  GLTN
Sbjct: 74  DTLPEALKDCSMAVGFT--RRSGILRIPDTRLANLCIPP--LDSLNLAIVFGREDRGLTN 129

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           EE+     + S P      SLN+S AV +++
Sbjct: 130 EELMYCTHVCSIPSIQSAGSLNLSHAVAVVL 160


>gi|307106546|gb|EFN54791.1| hypothetical protein CHLNCDRAFT_52745 [Chlorella variabilis]
          Length = 302

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 39/185 (21%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV P+   ++G VAR++  F    LR+V P     +  +R+ S  A  ++   +   
Sbjct: 81  CVVLVSPKRPISVGTVARSLSCFECLDLRIVEPCCDQLARSSRNGSKGAQFLLWQAQRHG 140

Query: 76  NLKEAIADLHFIYATT---ARNRNNFKS------------VLAPKE---AAIVLNERIFS 117
            L+ A+A + F  A T   A   + ++S            +L+P     AA   ++    
Sbjct: 141 TLESALAGVSFSVACTRWVAGRPSAYRSMAELLAAPQIVALLSPSHLEPAAATKHDGNAG 200

Query: 118 G---------------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
           G                     + + ++FGRE  GLT  E+ + +A +S P+  L  S++
Sbjct: 201 GSIGALAQQQQQQLPQQRQPGQRKLALVFGREVSGLTAAEVDMCDATLSIPIGRLQESMS 260

Query: 157 ISQAV 161
           +S AV
Sbjct: 261 LSHAV 265


>gi|323159255|gb|EFZ45242.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain
          protein [Escherichia coli E128010]
          Length = 84

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
          I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI +  +   
Sbjct: 7  IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNAHIVDT 65

Query: 77 LKEAIADLHFIYATTARNR 95
          L EA+A    +  T+AR+R
Sbjct: 66 LDEALAGCSLVVGTSARSR 84


>gi|237806517|ref|ZP_04593221.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027630|gb|EGI07685.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 76

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 27 NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
          NIG  ARAM N  L++L LV PR  +PS  A + ++ A  ++++ +V + L+EA+     
Sbjct: 6  NIGGAARAMKNMGLSRLVLVEPRI-FPSPDADARASGATDILEAAQVVATLEEALVGCRL 64

Query: 87 IYATTARNRN 96
          +  T+AR+R+
Sbjct: 65 VLGTSARDRS 74


>gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 154

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++ A    A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVKPL-GFRTDDATLKRAGLDYWYAVHIEYHE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+ ++E   +  F YATT  N+         + + I   +  F      ++FG+E  GL
Sbjct: 63  SFAEVQEKYQEGRFFYATTKANQ---------RYSDIAFQDGDF------LVFGKETKGL 107

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E +A  ++  I  P++    SLN+S +  ++V+E +
Sbjct: 108 PPELLAANADTCIKMPMSDKVRSLNLSNSAAIIVYEAL 145


>gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
 gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
          Length = 191

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 22/153 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  + R      + +   VNP  G P+    S  ++    +   RV  +++EAI+ L 
Sbjct: 31  HNLSAILRTCDAVGILEAHAVNPTGGVPTFNETSGGSHKWVYL---RVHPSIQEAISFLK 87

Query: 86  ----FIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +YAT  R +  +F+ V   +  AI+L              G E+WG++ E +ALS
Sbjct: 88  EKGFRVYATALREDARDFREVDYTQPTAILL--------------GAEKWGVSEETLALS 133

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +  I  P+  +  SLN+S A  ++++E     +
Sbjct: 134 HGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL 166


>gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 225

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
             DPQ   N+  V R    F +  L  +  P    P ++ +  S NAD  +D VR +S+ 
Sbjct: 35  FCDPQ---NVNAVLRTCEAFGVQTLHAIEGPMK--PYDRNKKISQNADKWLD-VRRWSST 88

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            E +A L      IYAT    R+   + L+            F+G+ V ++FG E+ G++
Sbjct: 89  AECLAHLRSEGFAIYATHLGERSTPMAGLS------------FAGK-VALVFGNEQRGVS 135

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            E +AL++A  + P+     SLN+S A  + +   +E   V   ++
Sbjct: 136 EEALALADACYAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH 181


>gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 225

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
             DPQ   N+  V R    F +  L  V  P    P ++ +  S NAD  +D VR +S+ 
Sbjct: 35  FCDPQ---NVNAVLRTCEAFGIQTLHAVEGPMK--PYDRNKKISQNADKWLD-VRRWSST 88

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            E +A L      IYAT    R+   + L+            F+G+ V ++FG E+ G++
Sbjct: 89  AECLAHLRSEGFAIYATHLGERSTPMAGLS------------FAGK-VALVFGNEQRGVS 135

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            E +A+++A  + P+     SLN+S A  + +   +E   V   ++
Sbjct: 136 EEALAVADACYAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH 181


>gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
 gi|48425869|pdb|1V2X|A Chain A, Trmh
 gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus]
 gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
          Length = 194

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 22/153 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  + R      + +   VNP  G P+    S  ++    +   RV  +L EA   L 
Sbjct: 34  HNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYL---RVHPDLHEAFRFLK 90

Query: 86  ----FIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +YAT  R +  +F+ V   K  A+              +FG E+WG++ E +AL+
Sbjct: 91  ERGFTVYATALREDARDFREVDYTKPTAV--------------LFGAEKWGVSEEALALA 136

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +  I  P+  +  SLN+S A  ++++E     +
Sbjct: 137 DGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL 169


>gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 225

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
             DPQ   N+  V R    F +  L  +  P    P ++ +  S NAD  +D VR +S+ 
Sbjct: 35  FCDPQ---NVNAVLRTCEAFGVQTLHAIEGPMK--PYDRNKKISQNADKWLD-VRRWSST 88

Query: 78  KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            E +A L      +YAT    R+   + L+            F+G+ V ++FG E+ G++
Sbjct: 89  TECLAHLRAEGFAVYATHLGERSRPMAGLS------------FAGK-VALVFGNEQRGVS 135

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            E +AL++A  + P+     SLN+S A  + +   +E   V   ++
Sbjct: 136 EEALALADACYAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH 181


>gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 153

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 26/160 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G +AR       T L LV P  G+ +E      A  D   D VRV   
Sbjct: 4   IVLVEPEIPYNTGNIARTCAATGST-LHLVKPL-GFSTEDKYLKRAGLD-YWDKVRVIYH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F  L+E   +  F Y +T   R   +    P +                ++FG+E  G
Sbjct: 61  ENFQELREKYPEGRFFYLSTKGKRYYHEVSYKPGDF---------------LVFGKETQG 105

Query: 132 LTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169
           L  +E+  +N   +F  P+ P   SLN+S  V ++V+E +
Sbjct: 106 LP-QELLEANKEFTFRIPMLPQIRSLNLSNTVAIVVYEAL 144


>gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
 gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
          Length = 223

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 15/166 (9%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+++++D      NIG V R    F + ++ L       P  +   ++  A+
Sbjct: 59  EFKEARKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGAE 118

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIF-SGQNVG 122
             +D  + F N ++A+ DLH         ++ +  VLA +  E + +L++ I    +   
Sbjct: 119 FTVDW-KYFKNTQDAVNDLH---------KDGY-VVLAIEQCEGSTMLDDLILEKDKKYA 167

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+FG E  G+  E +   +  I  P      SLN+S    +++WEC
Sbjct: 168 IVFGNEVKGVQQEVVNSCDGCIEIPQYGTKHSLNVSVTAGIVLWEC 213


>gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2]
          Length = 243

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 11/90 (12%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             IIFG+ER+G T+E IA+++  I  P+  +  SLN+S A  L+++E      ++   +V
Sbjct: 113 TAIIFGQERYGATDEAIAMADQDIIIPMAGMVQSLNVSVAAALVLYEAQRQRELAGMYDV 172

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFR 210
             ++ P  + + L F         ERGY R
Sbjct: 173 --EHLPEEECQKLLF---------ERGYPR 191


>gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
 gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
          Length = 221

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +   K P+++++D      NIG V R    F +  + L       P  +   ++  A+
Sbjct: 59  EFKEVDKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAE 118

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIF-SGQNVG 122
             +D  + F + ++A+ +LH          N+  +VLA ++ A   +L+E +   G+   
Sbjct: 119 YTVDW-KYFKHTQDAVNELH----------NDGYTVLAIEQCAGSTLLDELVLEKGRKYA 167

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G E  G+  E + + +  I  P      SLN+S    +M+WE
Sbjct: 168 IVLGNEVKGVQQEVVDMCDGCIEIPQFGTKHSLNVSVTAGIMIWE 212


>gi|145345886|ref|XP_001417430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577657|gb|ABO95723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 233

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 16/174 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------RDGWPSEKA------RSSSAN 63
            +I   P+   N+G +ARA   F     R+  P      R    + K       R++ A+
Sbjct: 59  CVIFCSPKTASNVGAMARACAAFECCDFRVATPLCDVECRACVNAAKGAQWLVPRAADAH 118

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  + D++R                A    +R  F  + A   A     E    G  + +
Sbjct: 119 AS-LEDALRGTVGTVVGFHPWRLDDAEAEASRARFDDLAALTAAYPGGGE---DGGKLAL 174

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +FG E  GL+  E+AL +A+ S P+  L  SL+++ A ++ +    E    S+E
Sbjct: 175 VFGNEADGLSERELALCDALCSIPMGRLIESLSVTHAAVIALSRFFEAREASAE 228


>gi|157164727|ref|YP_001467080.1| RNA methyltransferase [Campylobacter concisus 13826]
 gi|112800448|gb|EAT97792.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Campylobacter
           concisus 13826]
          Length = 159

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFS 75
           I+LV PQ+ +N G + R   N NL +L +V P     SEKA R +  +   ++D  +++ 
Sbjct: 4   IVLVHPQIPQNTGAIGRMCVNANL-KLHIVKPTVFDLSEKAVRRAGLDYWKILDP-KIWE 61

Query: 76  NLKEAI-ADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +L E + A+L     F +ATT  NR  + +   P +                I FG E  
Sbjct: 62  SLDEFLEANLSHKERFFFATTKTNRLYYDAKFEPGDF---------------IFFGGEST 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           GL  E  +I   NA I+ P+     SLN++ +  ++ +E +  +I
Sbjct: 107 GLPREFMDINFKNA-ITIPMGKEGRSLNLAMSAGIIAYEAIRQNI 150


>gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 235

 Score = 45.1 bits (105), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             I+FG+E++G T+E  AL++  I  P+  +  SLN+S A  L+++E      ++   N 
Sbjct: 113 TAILFGQEKYGATDEAKALADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQRTIAGMYNT 172

Query: 181 KEQNTPATKGELLSF 195
             Q  P  + + L+F
Sbjct: 173 --QQLPEEECQALAF 185


>gi|163859022|ref|YP_001633320.1| rRNA methylase [Bordetella petrii DSM 12804]
 gi|163262750|emb|CAP45053.1| rRNA methylase [Bordetella petrii]
          Length = 156

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 23/158 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV P++  N G   R   N    QL LV P  G+  + AR   A  D      V+V  
Sbjct: 4   VVLVCPEIPPNTGNAIRLCANTG-AQLHLVRPL-GFELDDARLRRAGLDYHEWQPVQVHD 61

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            L++A+A        IYA T R + N   V              F   +V  +FGRE  G
Sbjct: 62  TLEQALAATGAPPAHIYALTTRAQRNVAEV-------------AFGPDDV-FVFGRETAG 107

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L++E +AL      +  P+     SLN+S AV + V+E
Sbjct: 108 LSDEHMALFAPQQCLRLPMRAGQRSLNLSNAVAVTVFE 145


>gi|213863204|ref|ZP_03386459.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score = 44.7 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           V ++FGRER GLTNEE+   +  ++   NP + SLN++ AV ++ +E
Sbjct: 13  VALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYE 59


>gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
 gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
          Length = 194

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 12/143 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  + R      + Q   VNP  G P+    S  ++    ++   V    + A   L 
Sbjct: 34  HNLSAILRTCDAVGILQAHAVNPTGGVPTFNETSGGSHKWVYLE---VHPTTEAAFRHL- 89

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                  R R       A KE A    E  ++ +   I+ G E+WG++ E +AL++ +I 
Sbjct: 90  -------RERGFSVYATALKEGARDYREVDYT-RPTAIVLGAEKWGVSEEALALADGLIH 141

Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
            P+  +  SLN+S A  ++++E 
Sbjct: 142 IPMLGMVQSLNVSVAAAVILFEA 164


>gi|239948353|ref|ZP_04700106.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes
          scapularis]
 gi|239922629|gb|EER22653.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes
          scapularis]
          Length = 58

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 25/34 (73%)

Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
          P+IILV PQ+GENI   ARA+ NF L +L +V P
Sbjct: 3  PIIILVAPQMGENISATARAIKNFGLNELGIVAP 36


>gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa
           SC2]
 gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa
           SC2]
          Length = 154

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++ A    A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVKPL-GFRTDDATLKRAGLDYWYAVHIEYHE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+ ++E      F YATT   +         + + I   +  F      ++FG+E  GL
Sbjct: 63  SFAEVQEKYQAGRFFYATTKAKQ---------QYSDIKFQDGDF------LVFGKETKGL 107

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E +A + +  I  P++    SLN+S +  ++V+E +
Sbjct: 108 PPELLAANPDTCIKMPMSDKVRSLNLSNSAAIIVYEAL 145


>gi|188585180|ref|YP_001916725.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349867|gb|ACB84137.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 152

 Score = 43.9 bits (102), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 18/156 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++  N G ++R     N T L LV P     S++    +        S +V  N
Sbjct: 3   VVLVEPEIPPNTGNISRTCAVSN-TTLHLVEPLGFSISDRELKRAGLDYWDKLSYQVHEN 61

Query: 77  LK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               E +   H IY  T R +N +  +  P+++ +V              FG+E  GL +
Sbjct: 62  FTSVENLLQTHPIYIATTRGKNYYYDIEYPRDSVLV--------------FGKETEGLPD 107

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             I       I  P+ P F SLN+S +V ++++E +
Sbjct: 108 WIINKYYENSIRIPMAPDFRSLNLSNSVAVVLFEAL 143


>gi|187927322|ref|YP_001897809.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|309779977|ref|ZP_07674731.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
           5_7_47FAA]
 gi|187724212|gb|ACD25377.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
           12J]
 gi|308921336|gb|EFP66979.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
           5_7_47FAA]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +ILV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VILVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F SV   P +                 +FG E  
Sbjct: 62  DWDAFLRDAQPDPTRMFALTTRGSTPFASVAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  E   ++  I  P+ P   SLN+S  V ++V+E 
Sbjct: 107 GLSEERREWFPASQRIRLPMRPDNRSLNLSNTVAVVVFEA 146


>gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 218

 Score = 43.9 bits (102), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 13/186 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ D     N+  + R      +  L +VN    +P+    S  +          VF  
Sbjct: 22  VLIEDVHKPHNLSAIIRTCDAVGILDLHVVNQNGKYPTFSKVSQGSEK-------WVFIT 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              +I D     A  A  R  FK   A      +    +   + V I+ G E+WG++ E 
Sbjct: 75  TYISIDD-----AINALKRRKFKIYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEA 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
             L +  I+ P+  +  SLN+S A  ++++E     +  ++   K Q +P T  ++L   
Sbjct: 130 AQLVDGHITIPMLGMVQSLNVSVAAAVILFEAQRQRL-EAKMYTKMQLSPTTYNKILFEW 188

Query: 197 DYLEIS 202
            Y  IS
Sbjct: 189 SYPNIS 194


>gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
           V453]
 gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
           V453]
          Length = 154

 Score = 43.9 bits (102), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++      A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFNTDDKTLKRAGLDYWYAVHIEYHD 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F  LK    D  + YATT   +         +   I   +  F      ++FG+E  GL
Sbjct: 63  SFEELKALYPDGRYFYATTKATK---------RYMDIEYQDGDF------LVFGKETKGL 107

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E +A  S   I  P+     SLN+S +  +MV+E +
Sbjct: 108 PPELLAANSEHCIRMPMTDKVRSLNLSNSAAIMVYEAL 145


>gi|293602335|ref|ZP_06684781.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292819097|gb|EFF78132.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 156

 Score = 43.5 bits (101), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 23/158 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +ILV P++  N G   R   N    QL LV P  G+  + AR   A  D      VRV  
Sbjct: 4   VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPL-GFELDDARMRRAGLDYHEWQPVRVHD 61

Query: 76  NLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            L+EA+    AD   IYA T   + +   +              F   +V  +FGRE  G
Sbjct: 62  TLQEALDDTGADAGSIYALTTHAQRSVADI-------------AFKPGDV-FVFGRETAG 107

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L++E  A+      +  P+     SLN+S AV + V+E
Sbjct: 108 LSDEHQAMFPPQQRLRLPMRAGQRSLNLSNAVAVTVFE 145


>gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
           curdlanolyticus YK9]
 gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
           curdlanolyticus YK9]
          Length = 155

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-------CVID 69
           I+LV+P++  N G +AR       T L LV P  G+ ++ A    A  D          D
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFRTDDATLKRAGLDYWYAVNLTYYD 62

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           S   FS ++E      F YA+T  N+    S    K+  +              +FG+E 
Sbjct: 63  S---FSEVEERFKGHRFFYASTRANKR--YSDFEYKDGDL-------------FVFGKET 104

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL  E + A  N +I  P+     SLN++ +  ++V+E +  +
Sbjct: 105 KGLPQELLDANPNQLIRMPMTDKVRSLNLANSAAIVVYEALRQT 148


>gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
 gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
          Length = 229

 Score = 43.1 bits (100), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           F+G     + G E+WGLT E  AL +  I  P+  +  SLN+S A   +++E +     +
Sbjct: 112 FTGP-CAFVLGAEKWGLTEEATALMDQAIFIPMRGMVQSLNVSVATATLLYEALRQRQAA 170

Query: 176 SEKNVKEQNTPATK-GELLSFLDYLEIS--LEERGYFRP-VEKKKKMLDDL 222
               +  +  PA    +LL    Y +++    E+G   P + ++ ++L+DL
Sbjct: 171 GLAPLNGEGVPAEHYSDLLFEWAYPQVAAWCREQGRSYPELNEQGEILEDL 221


>gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 2360]
 gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum JW20]
 gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum ATCC 27405]
 gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 2360]
 gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum JW20]
 gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 1313]
          Length = 164

 Score = 43.1 bits (100), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 26/160 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           ++LV+P++ +N G +AR         L LV P  G+  E      A  D   D V +   
Sbjct: 5   VVLVEPEIPQNTGNIARTCAAVG-ANLHLVKPL-GFSVEDRYLKRAGLD-YWDKVNIKYY 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             FS L++   + H  Y +T + +  +  V  P +  IV              FG+E  G
Sbjct: 62  DSFSELRDKYKE-HIFYYSTTKAQKLYTDVKYPDDCFIV--------------FGKETAG 106

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECM 169
           L  EE+ + N    I  P+     SLN+S +V ++V+E +
Sbjct: 107 LP-EELLVENKEWCIRIPMRDDIRSLNLSNSVAIIVYEAL 145


>gi|303287456|ref|XP_003063017.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455653|gb|EEH52956.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 21/96 (21%)

Query: 89  ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP- 147
           ATTAR R N   V A + AA +L      G+ V ++FG ER GLTNEE+  ++A ++ P 
Sbjct: 197 ATTARPRENVPLVTA-RNAAKLLAAEAKRGK-VAVLFGNERTGLTNEELGTAHAAVAIPT 254

Query: 148 ----------------VNPLFPSLNISQAVLLMVWE 167
                             P   SLN+SQAV ++ +E
Sbjct: 255 AGQGSLCRKSLKYTGGTGPT--SLNLSQAVGVIAYE 288


>gi|71065779|ref|YP_264506.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71038764|gb|AAZ19072.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
          Length = 186

 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV P++  N G + R   N    QL LV P  G+  +  +   A  D      +    
Sbjct: 5   IVLVAPKMPSNTGNIIRLCANSG-AQLHLVKPL-GFELDDKKLRRAGLDYHEYAHLQVHD 62

Query: 73  VFSNLKEAI--ADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +S  K+A+  AD H I A TT  ++  +      +E A   +E  FSG NV ++FG E 
Sbjct: 63  DWSVAKQALQDADCHTITALTTKLSKPFYDYDFGGQETAESGSE--FSGNNVAMVFGSET 120

Query: 130 WGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            GL +   E+I   N  +  P+     SLN+S +V + ++E
Sbjct: 121 AGLADDIREDIGADN-WLRLPMLADSRSLNLSNSVAICLYE 160


>gi|238023026|ref|ZP_04603452.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
 gi|237865409|gb|EEP66549.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
          Length = 154

 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 21/157 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            ++L +P++  N G + R   N    +LRL+ P  G+P + A+   A  D     ++ V 
Sbjct: 3   TVVLFEPEIPPNTGNIIRLCANTG-CELRLIKPL-GFPLDSAKMKRAGLDYHEFSTLIVH 60

Query: 75  SNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            NL E +  L    I+A T + +N   SV              F   +V  +FG E  GL
Sbjct: 61  ENLAECLDTLQGKRIFALTTKGKNRPDSV-------------AFQAGDV-FLFGPETRGL 106

Query: 133 --TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             T  +    N  I FP+ P   S+N+S  V + V+E
Sbjct: 107 PATVLDTLPENQKIRFPMMPNNRSMNLSNTVAITVFE 143


>gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 181

 Score = 42.7 bits (99), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 23/169 (13%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           Q + + K P+I+++D      N+G V R    F + ++ L       P+++   ++  A 
Sbjct: 16  QFKKAEKTPLIVILDNVRSLNNVGSVFRTCDAFLVEKIYLCGITATPPNKEIHKTALGAT 75

Query: 65  DCVI-----DSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           D V      D+++V   LK E +  +    A  A   N+F+    PK           + 
Sbjct: 76  DSVAWEYAEDTLQVVERLKAEGVCVISIEQAEKAVMLNDFQ----PK-----------AH 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
               +IFG E  G+  E ++LS+ +I  P      SLN+S +  +++WE
Sbjct: 121 TQYAVIFGNEVKGVAQEVVSLSDGVIEIPQYGTKHSLNVSVSAGIVIWE 169


>gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 178

 Score = 42.7 bits (99), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 8   LQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSS 60
            + + K P+II++D      N+G V R    F + ++ L         RD   +    + 
Sbjct: 18  FKEAEKTPIIIVLDNIRSLNNVGSVFRTSDAFLVEKIYLCGITATPPHRDIQKTALGATD 77

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQ 119
           +   + V DS+ +   LKE    +H      A             E A++L++ +  +G+
Sbjct: 78  AVTWEYVEDSIALVRKLKED--GVHVCAIEQA-------------EGAVMLDKFVPTTGE 122

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              ++FG E  G+  E ++LSN +I  P      SLNIS +  +++W+
Sbjct: 123 KYAVVFGNEVKGVQQEIVSLSNTVIEIPQVGTKHSLNISVSAGVVIWD 170


>gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 235

 Score = 42.7 bits (99), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             I+FG+E++G ++E  A+++  I  P+  +  SLN+S A  L+++E      ++   N 
Sbjct: 113 TAILFGQEKYGASDEAKAIADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQRTIAGMYNT 172

Query: 181 KEQNTPATKGELLSF 195
             Q  P  + + L+F
Sbjct: 173 --QQLPEEECQALAF 185


>gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           L P + A++L E +   Q   +I G E  GLT   +  S+     P+ P   SLN++ A 
Sbjct: 233 LTPSDDAVMLPEALDGAQRAALIVGAEGPGLTEHAMRASDVRARIPMAPGTDSLNVATAA 292

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKG 190
            +  +E    SIV   + ++    PA  G
Sbjct: 293 AMGFYERARTSIVGCGRPLR----PARGG 317


>gi|303241069|ref|ZP_07327578.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
           cellulolyticus CD2]
 gi|302591329|gb|EFL61068.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
           cellulolyticus CD2]
          Length = 164

 Score = 42.7 bits (99), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 24/159 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++ +N G + R        +L L+ P  G+  E      A  D      I    
Sbjct: 5   IVLVEPEIPQNTGNIVRTCAAVG-ARLHLIKPL-GFSVEDKYLKRAGLDYWNEVDISYYD 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F  LKE      F YATT +   N+  +  P               N  ++FG+E  GL
Sbjct: 63  SFQELKEKYTGCSFYYATT-KAVKNYAEIEYP--------------DNCFLVFGKETKGL 107

Query: 133 TNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECM 169
             E+I + N    I  P+     SLN+S +V ++V+E +
Sbjct: 108 P-EDILVDNREWCIRIPMIGEIRSLNLSNSVAIIVYETL 145


>gi|224003205|ref|XP_002291274.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973050|gb|EED91381.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 167

 Score = 42.4 bits (98), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + ++FG E+ G+T  ++   + ++  P NP F SLN++ AV L+ ++
Sbjct: 106 LALVFGSEKTGMTESDMDTCHVMLGIPTNPQFGSLNLAAAVQLIAYD 152


>gi|297616863|ref|YP_003702022.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 152

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 24/159 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           ++LV+P++ +N G VAR       T L LV P  G+  E      A  D   D V V   
Sbjct: 3   VVLVEPEIPQNTGNVARTC-ALTQTTLHLVKPL-GFSLEDRYLKRAGLD-YWDKVEVKVW 59

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F NL        +  ATT +++  +  V   K   IV              FG+E  G
Sbjct: 60  DSFDNLLAVYPGRSYFLATT-KSKQRYTDVRYKKGDFIV--------------FGKETQG 104

Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           L  E +   S ++I  P+  +  SLN+S AV ++++E +
Sbjct: 105 LPGELLERFSQSLIRIPMVDIGRSLNLSNAVAVVLFEAL 143


>gi|213029186|ref|ZP_03343633.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 69

 Score = 42.4 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           +ID++ VF  L +A+ D+ F  ATTAR+R  F    +P E   +L E+
Sbjct: 5   IIDNIEVFHTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEK 52


>gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 223

 Score = 42.4 bits (98), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           QN   + G E+WGL+NE I++ +  I  P+  +  SLN+S A  ++++E +
Sbjct: 114 QNTCFVLGAEKWGLSNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAV 164


>gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 280

 Score = 42.4 bits (98), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGLT +E  L++A++  P+  L  SLN++ A  + ++
Sbjct: 231 VFGNEAWGLTEDERGLADAVVRVPIRGLAESLNLATAATVCLY 273


>gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           QN   + G E+WGL+NE I++ +  I  P+  +  SLN+S A  ++++E +
Sbjct: 114 QNTCFVLGAEKWGLSNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAV 164


>gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 14/152 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR +       L LV P  G+ ++      A  D      R+   
Sbjct: 7   IVLVEPEIPPNTGNIAR-LCAVVGADLHLVKPL-GFKTDDKSLKRAGLDY---WHRLKMT 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + E   D        ARN    K  LA  +  I+ +E  F  +   +IFGRE  GL+ E 
Sbjct: 62  IYEDFDDFE------ARNPGG-KRYLATTKGKIIYSETTFE-EGCYLIFGRETKGLSPEI 113

Query: 137 IA-LSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +A     +I  P+     SLN+S AV ++ +E
Sbjct: 114 LARYPEHLIRLPMKNECRSLNLSNAVAIVTYE 145


>gi|241661853|ref|YP_002980213.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|240863880|gb|ACS61541.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
           12D]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F S+   P +                 +FG E  
Sbjct: 62  DWDAFLRDAQPDPARMFALTTRGSTPFASMAFQPGD---------------WFVFGSETR 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  E   +   I  P+ P   SLN+S  V ++V+E 
Sbjct: 107 GLSEERREWFPATQRIRLPMRPDNRSLNLSNTVAVVVFEA 146


>gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 223

 Score = 42.0 bits (97), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           QN   + G E+WGL+NE I++ +  I  P+  +  SLN+S A  ++++E +
Sbjct: 114 QNTCFVLGAEKWGLSNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAV 164


>gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 281

 Score = 42.0 bits (97), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 8   LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANAD 65
           LQ S+K P+I++ + P+   NIG + R     NL  + + NP+ D +     RSS     
Sbjct: 127 LQLSSKKPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSS---VG 183

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           CV  +        E IA L           +N  +  A   A+ +     ++  +  I+ 
Sbjct: 184 CVFTTKIATGTTSEIIAYLK---------EHNIATYCAALTASKIYTTVDYTSGS-AIVV 233

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G E  GL+ E ++ SN  I  P+     S+N+S A  ++++E
Sbjct: 234 GTEATGLSKEWLSNSNQNIIIPMEGQIDSMNVSVAAAVVIFE 275


>gi|83746863|ref|ZP_00943910.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|207727800|ref|YP_002256194.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|207742203|ref|YP_002258595.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|83726448|gb|EAP73579.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|206591041|emb|CAQ56653.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206593591|emb|CAQ60518.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F S+   P +                 +FG E  
Sbjct: 62  DWEAFLRDAQPDPARMFALTTRGSTPFASLAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  E    +  I  P+ P   SLN+S  V ++V+E 
Sbjct: 107 GLSEERREWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEA 146


>gi|93005998|ref|YP_580435.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393676|gb|ABE74951.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I+LV P++  N G + R   N    QL LV P  G+  +  +   A  D      ++V  
Sbjct: 5   IVLVAPKMPSNTGNIIRLCANSG-AQLHLVKPL-GFELDDKKLRRAGLDYHEYAHLQVHD 62

Query: 76  N---LKEAI--ADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           N    K+A+  AD H I A TT  ++  +      +E A   ++  FSG NV ++FG E 
Sbjct: 63  NWSIAKQALQDADCHTITALTTKLSKPFYDYDFGGQETAESGSD--FSGNNVAMVFGSET 120

Query: 130 WGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            GL +   E+I   N  +  P+     SLN+S +V + ++E
Sbjct: 121 AGLADDIREDIGADN-WLRLPMLADSRSLNLSNSVAICLYE 160


>gi|313890845|ref|ZP_07824469.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120743|gb|EFR43858.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 182

 Score = 42.0 bits (97), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 20/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74
           I+L +PQ+ +N G +AR     N   L ++ P  G+P +  +   A  D    +D VR +
Sbjct: 20  IVLFEPQIPQNTGNIARTCAATN-APLHIIKPM-GFPIDDRKMRRAGLDYWEKLD-VRFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLT 133
            NL++ +            ++ N +  L  K A+ V ++  F  GQ    +FGRE  GL 
Sbjct: 77  DNLEDFL------------DKCNGQLHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLP 124

Query: 134 NEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169
              +       +  P+N     SLN+S  V ++V+E +
Sbjct: 125 EAFMRKYPEKALRIPMNDQHVRSLNLSNTVCMVVYEAL 162


>gi|300705287|ref|YP_003746890.1| tRNA/rRNA methyltransferase (spou) [Ralstonia solanacearum
           CFBP2957]
 gi|299072951|emb|CBJ44307.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           CFBP2957]
          Length = 175

 Score = 42.0 bits (97), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 23  VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 80

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           N    L++A  D   ++A T R    F  +   P +                 +FG E  
Sbjct: 81  NWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGD---------------WFVFGSETR 125

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  E    +  I  P+ P   SLN+S  V ++V+E 
Sbjct: 126 GLSEERREWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEA 165


>gi|225871140|ref|YP_002747087.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700544|emb|CAW95025.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 182

 Score = 42.0 bits (97), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 24/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           ++L  PQ+ +N G +AR     N T L ++ P  G+P +  +   A  D      +R + 
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPM-GFPIDDRKMKRAGLDYWDKLDIRFYD 76

Query: 76  NLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +L E +A     LH I        + F   +   EA    N+R    Q+   +FGRE  G
Sbjct: 77  HLDEFLAQCDGSLHVI--------SKFADRVYSDEA---YNDR----QSHYFLFGREDTG 121

Query: 132 LTNEEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169
           L    +   ++  +  P+N     SLN+S AV ++V+E +
Sbjct: 122 LPEPFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEAL 161


>gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
 gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
          Length = 229

 Score = 41.6 bits (96), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           F+G     + G E+WGLT E   L +  +  P+  +  SLN+S A   +++E +     +
Sbjct: 112 FTGP-CAFVLGAEKWGLTEEATGLMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAA 170

Query: 176 SEKNVKEQNTPATK-GELLSFLDYLEIS--LEERGYFRP-VEKKKKMLDDL 222
                  +  PA + G+LL    Y +++    E+G   P +    ++L+DL
Sbjct: 171 GVAPHNGEGIPAEQYGDLLFEWAYPQVAAWCREQGRSYPALSGDGEILEDL 221


>gi|255083500|ref|XP_002504736.1| predicted protein [Micromonas sp. RCC299]
 gi|226520004|gb|ACO65994.1| predicted protein [Micromonas sp. RCC299]
          Length = 369

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +++V  +   NIG +ARA  +F    LRLV PR    S  + SS+  A  V+     + 
Sbjct: 84  CVVVVGSKKAGNIGAIARAAASFECEDLRLVAPRVDPTSRSSLSSAKGAQHVVHGAGEYL 143

Query: 76  NLKEAIADLHFIYA 89
           ++ EAIAD     A
Sbjct: 144 SVAEAIADCDAAVA 157



 Score = 40.4 bits (93), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           ++FGRE  GLT+EE+ L +A    P   L  SL++S A ++++
Sbjct: 287 LVFGREVDGLTDEEVNLCDAACRIPTGRLIESLSVSHAAVIIL 329


>gi|302842287|ref|XP_002952687.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f.
           nagariensis]
 gi|300262031|gb|EFJ46240.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f.
           nagariensis]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN----ADCVIDSVR 72
           ++LV P+   NIG VARA  NF    L LV PR    S    +  A      D V+D + 
Sbjct: 60  VVLVAPKHEANIGAVARACANFECLSLFLVAPRCAVGSGGVGAGEARKVACGDAVLDRLV 119

Query: 73  VFSNLKEAIAD 83
           V   L EA+AD
Sbjct: 120 VTDTLAEALAD 130


>gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68]
 gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
 gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1]
 gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14]
 gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
          Length = 181

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 14/156 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L +PQ+ +N G +AR     N + L ++ P  G+P +  +   A  D      VR + 
Sbjct: 17  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPIDDRKMKRAGLDYWDKLDVRFYD 74

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL E      F+   + + R +  S  A K  +   +E    G     +FGRE  GL  +
Sbjct: 75  NLAE------FMDYASKQGRVHLVSKFADKTYS---DEDYNDGNIHYFLFGREDKGLPED 125

Query: 136 EI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169
            +       I  P+N     SLN+S    ++V+E +
Sbjct: 126 FMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEAL 161


>gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
 gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
          Length = 231

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 15/121 (12%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WPS + R   S+SA ++  +  V+   N+ +A++ L          +     VLA   +A
Sbjct: 52  WPSVRMRTMVSASAGSNSWV-KVKTHRNITDAVSHL----------KTQGMQVLATNLSA 100

Query: 109 IVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             ++ R I   +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 101 KAVDFREIDYTRPTCILMGQEKTGITAEALALADQDIIIPMVGMVQSLNVSVASALILYE 160

Query: 168 C 168
            
Sbjct: 161 A 161


>gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 235

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L++     + IL   +   N G +AR+   F +  +   N R    ++    SSA A  
Sbjct: 84  KLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDAIIFPNRRAATVNDTVVKSSAGAIY 143

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            ID  +V SN+ ++I  L     +IYAT     +              + E  FSG+   
Sbjct: 144 DIDVCKV-SNISQSIDKLKEAGFWIYATDLEGED--------------IRECDFSGK-AA 187

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           ++ G E  G++   +  S+  I+ P    F SLN S A  ++++E
Sbjct: 188 VVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYE 232


>gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 250

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           Q   II G+ER G T E IAL++  I  P+  +  SLN+S A  L+++E
Sbjct: 111 QPTAIILGQERHGATEEAIALADKNIVIPMVGMVQSLNVSVAAALVLYE 159


>gi|332523185|ref|ZP_08399437.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314449|gb|EGJ27434.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 26/161 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74
           I+L +PQ+ +N G +AR     N   L ++ P  G+P +  +   A  D    +D VR +
Sbjct: 19  IVLFEPQIPQNTGNIARTCAATN-APLHIIKPM-GFPIDDRKMRRAGLDYWEKLD-VRFY 75

Query: 75  SNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            NL++ +      LH I            S  A K   +  +E    GQ    +FGRE  
Sbjct: 76  DNLEDFLDKCDGQLHLI------------SKFASK---VYSDEHFDDGQRHYFLFGREDK 120

Query: 131 GLTNEEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169
           GL    +       +  P+N     SLN+S  V ++V+E +
Sbjct: 121 GLPEAFMRKYPEKALRIPMNDEHVRSLNLSNTVCMIVYEAL 161


>gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 180

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           Q + + K P+I+++D      NIG V R    F + ++ L       P+++   ++  A 
Sbjct: 16  QFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 65  -----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG- 118
                + V +++     LKE   D++ I    A N             + +LN+   +G 
Sbjct: 76  DSVAWEYVENTLSAVEKLKEQ--DVYIISIEQAEN-------------STMLNDFQPNGK 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           Q   IIFG E  G+  E ++ S+ +I  P      SLNIS +  + +WE
Sbjct: 121 QKYAIIFGNEVKGVEQEVVSTSDEVIEIPQYGTKHSLNISVSAGIAIWE 169


>gi|315652201|ref|ZP_07905196.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485507|gb|EFU75894.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 165

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 28/162 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74
           I+L++P++ +N G + R+    N T+L L+ P  G+   + R   A  D    +D + V+
Sbjct: 3   IVLLEPEIPDNTGNIGRSCVATN-TRLHLIEPL-GFKLSEKRIKRAGMDYWEKLD-LTVY 59

Query: 75  SNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           S+LK+       A  H  +ATT +  + +K VL   +                I+FG+E 
Sbjct: 60  SDLKDFYEKNPKAKEHMYFATT-KAHHTYKDVLYDCDEY--------------IMFGKES 104

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECM 169
            G+  EEI   N    I  P+     SLN+S +V ++++E +
Sbjct: 105 AGIP-EEILAENEENCIRIPMWGDIRSLNLSNSVAVILYEAL 145


>gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
          Length = 153

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++LV+P++  N G +AR +     T L LV+P  G+ ++      A  D     VR+  +
Sbjct: 8   VVLVEPEIPPNTGSIAR-LCGATDTVLHLVHPL-GFDTDDKHLKRAGLD-YWQHVRIVHW 64

Query: 75  SNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           SNL+E +A      L+F+   T R              AI      F      +IFGRE 
Sbjct: 65  SNLEEFLAAQDENRLYFLSKKTQR-----------PYTAISFTPGDF------LIFGRET 107

Query: 130 WGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECM 169
            GL  E + L ++  +  P+ NP   SLN++QA  ++++E +
Sbjct: 108 KGLPAEILELYADRCLLIPMSNPHIRSLNLAQAAAIVLYEAL 149


>gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
          Length = 190

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 24/154 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLK 78
           DP    NI  V R+     L  + LV   + WP E +R SSA+A   +D VR  S     
Sbjct: 21  DPH---NISAVLRSCDAVGLLTVHLVYTIEEWP-ELSRVSSASAVKWLDIVRHESIEACY 76

Query: 79  EAIADLHF-IYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A+    F IYAT  +A +R+ +   L                  V ++FG E  G+++E
Sbjct: 77  QALRAQGFTIYATHLSAASRDLYDLDLTGP---------------VALVFGNEHRGVSDE 121

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +A ++  +  P+  +  SLNIS A  + ++E +
Sbjct: 122 AVANADGSVVIPMMGMVQSLNISVACAVSLYEAL 155


>gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 180

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 7   QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           +   S K P+ IIL D +   N+G V R    F L  L L       P      ++  A+
Sbjct: 16  EYHESPKLPIRIILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPDIHKTALGAE 75

Query: 66  CVIDSVR--VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQN 120
              DSV+   FS++ +AI +L          +    S+ A ++A   L+   FS   G  
Sbjct: 76  ---DSVKWEYFSSVVDAIEEL----------KAKGYSICAIEQAEGSLSLENFSPSKGTR 122

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             +IFG E  G+  E I L +  +  P      SLN+S    +++W+
Sbjct: 123 YALIFGNEVKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIWQ 169


>gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 178

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 11/165 (6%)

Query: 8   LQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            + S K P+I+++D  +   NIG V R    F + ++ L       P+++   ++  A  
Sbjct: 17  FKKSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPPNKEIHKTALGATE 76

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIF 125
            + +     N+ E I +L        +  N     +   E+A+ L + ++   Q   ++F
Sbjct: 77  TV-AWEHHENVLEVIENL--------KKENVLTLAIEQVESAVFLQDFQVEKNQKYALVF 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E +G++ E +A+ +  I  P      SLNI+ +  ++VW+  +
Sbjct: 128 GNEVYGVSQEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVWDLFQ 172


>gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 175

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 74/163 (45%), Gaps = 11/163 (6%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +++ K P+++++D      NIG V R    F +  + L       P+ +   ++  A+
Sbjct: 16  EFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTALGAE 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124
             +D V  + + ++A+  L        ++R      +   E +I+L+E +    +   ++
Sbjct: 76  NSVDWVY-YEDTRDALRGL--------KDRGFTICAIEQAERSIMLDELVVDKAKGYAVV 126

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G E  G+  E + L +  I  P      SLN+S A  +++WE
Sbjct: 127 LGNEVKGVRQEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIWE 169


>gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 164

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++  N G +AR +     T L LV+P  G+  +      A  D   D +++ + 
Sbjct: 19  VVLVEPEIPPNTGSIAR-LCGATDTILHLVHPL-GFKIDDKHLKRAGLD-YWDQIKIVN- 74

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                +DL          R +F S    K+A  +  E  F   +  ++FG+E  GL  E 
Sbjct: 75  ----WSDLDAFLTAQDEQRLHFLS----KKADRLYTEVRFQPGDF-LVFGKETKGLPEET 125

Query: 137 IAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECM 169
           +AL ++   + P+ NP   S+N++QA  ++++E +
Sbjct: 126 LALYADRCCAIPMSNPAIRSINLAQAAAVVLYEAI 160


>gi|315223322|ref|ZP_07865183.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           anginosus F0211]
 gi|315187754|gb|EFU21508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           anginosus F0211]
          Length = 170

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 20/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74
           I+L +PQ+ +N G +AR     N + L ++ P  G+P +  +   A  D    +D +  +
Sbjct: 8   IVLFEPQIPQNTGNIARTCAATN-SPLHIILPM-GFPIDDRKMKRAGLDYWDKLD-ITYY 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLT 133
            NL+E ++ +            + +  L  K A  V  E  F +  N   +FGRE  GL 
Sbjct: 65  DNLEEFMSKM------------DGQLYLISKFAEKVYAEENFATAGNHYFMFGREDKGLP 112

Query: 134 NEEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169
            + + A S   +  P+N     SLN+S  V +MV+E +
Sbjct: 113 EDFMRAHSEKALRIPMNDEHVRSLNLSNTVCMMVYEAL 150


>gi|319956345|ref|YP_004167608.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319418749|gb|ADV45859.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 157

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVI-DS 70
           I+LV P++  N G +AR   N    +L L+ P     SEKA   +      + D  + +S
Sbjct: 4   IVLVHPKIPPNTGNIARLCVNLG-AKLHLIEPLGFDISEKAVRRAGLDYWKDLDLTVWES 62

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +  F  L E   D H   ATT   R  +++   P +                +IFG E  
Sbjct: 63  IEAF--LAEHPIDGHCHLATTKTERLYWEAEYHPGDW---------------LIFGSETE 105

Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E + +  +  I+ P++P   S+N+S AV ++ +E +  S
Sbjct: 106 GLPAELLQSRPDRCITIPMSPAGRSINLSVAVGIVAYEALRQS 148


>gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           VG +FG E WGL  E +AL++  +S P+     SLN++ A  + ++
Sbjct: 229 VGWVFGNEAWGLPEETVALTDGAVSVPIYGGAESLNLATAAAVCLY 274


>gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 228

 Score = 40.8 bits (94), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 18/188 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSV--RVFSNLKEA 80
            N   V R+     + +  L+    G P+E    +R ++A +      V  R + +   A
Sbjct: 31  HNFSAVLRSCDAVGVLEAHLIPAAHGIPTEDQNPSRHTAATSGSAAKWVGLRTYPDTPSA 90

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            ADL        R+R            AI   E  ++ +   I+ G E+WG+T E   L+
Sbjct: 91  FADL--------RSRGFVIYAAHFSHKAIDYREVDYT-RPTCILLGTEKWGVTEEAATLA 141

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL---SFLD 197
           +  I  P+  +  SLN+S A  ++++E     I +   + + +  PA    LL   ++ D
Sbjct: 142 DGHIVIPMMGMVQSLNVSVAAAVILFEAQRQRIQAGMYD-RPRLEPALHQRLLFEWAYPD 200

Query: 198 YLEISLEE 205
           + E   +E
Sbjct: 201 WAERCRKE 208


>gi|291619492|ref|YP_003522234.1| TrmH [Pantoea ananatis LMG 20103]
 gi|291154522|gb|ADD79106.1| TrmH [Pantoea ananatis LMG 20103]
          Length = 233

 Score = 40.8 bits (94), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 15/121 (12%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WPS++ R   S+SA ++  ++ V    ++ +AI+ L          +     +LA   +A
Sbjct: 52  WPSQRMRTQASASAGSNSWVNVV-THRSINDAISHL----------KTQNMQILATNLSA 100

Query: 109 IVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             ++ R I   +   I+ G+E+ G+T+E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 101 DAVDFREIDYTKPTCILMGQEKTGITDEALALADRHIIIPMVGMVQSLNVSVASALILYE 160

Query: 168 C 168
            
Sbjct: 161 A 161


>gi|327395801|dbj|BAK13223.1| tRNA guanosine-2'-O-methyltransferase TrmH [Pantoea ananatis
           AJ13355]
          Length = 233

 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 15/121 (12%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WPS++ R   S+SA ++  ++ V    ++ +AI+ L          +     +LA   +A
Sbjct: 52  WPSQRMRTQASASAGSNSWVNVV-THRSINDAISHL----------KTQNMQILATNLSA 100

Query: 109 IVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             ++ R I   +   I+ G+E+ G+T+E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 101 DAVDFREIDYTKPTCILMGQEKTGITDEALALADRHIIIPMVGMVQSLNVSVASALILYE 160

Query: 168 C 168
            
Sbjct: 161 A 161


>gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 250

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 22/161 (13%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD---GWPSEKARSSSANADCVIDSV 71
           P+++L       N+G +AR    F L   RL+ PRD     PSE A   +      ++  
Sbjct: 98  PLLVLDRIGNAHNLGAIARTAAFFGLP--RLILPRDPAAAQPSEAAYRVAEGGMTHLELA 155

Query: 72  RVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV    + L+  +A  + +     R                +   +  +G+ + ++ G E
Sbjct: 156 RVDDLPAFLRSLVAAGYDVIGAATRGG--------------LPQAQSHTGKPIALVLGNE 201

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             GL+ E  A    +++ P +    SLN+S A  +++WE +
Sbjct: 202 EHGLSAEVAAACTRLVTIPGSGKVESLNVSVAGAVLIWELL 242


>gi|300692668|ref|YP_003753663.1| tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07]
 gi|299079728|emb|CBJ52404.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           PSI07]
          Length = 175

 Score = 40.4 bits (93), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 23  VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 80

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F  +   P +                 +FG E  
Sbjct: 81  SWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGD---------------WFVFGSETR 125

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  A    +  I  P+ P   SLN+S  V ++V+E 
Sbjct: 126 GLSEERRAWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEA 165


>gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 17/157 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA-RSSSANADCV--IDS 70
           P+++L       N+G +AR M  F L +L + + P    PSE + R S    + V  I +
Sbjct: 65  PLLVLDGVGNPHNLGAIARTMAFFGLERLLISDHPGQASPSEASLRVSEGGLEWVEVIRA 124

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +  + LK  + D H I  T         ++ + K  A VLN     G+ + +I G E  
Sbjct: 125 QKFVAALKR-LRDSHRIVGT---------ALGSGKPVAEVLNR---PGKPIALILGNEED 171

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           GL    +A  + I++ P +    SLN++    +++ E
Sbjct: 172 GLPTATLAACDDIVTLPGSGRVQSLNVAATAAILIHE 208


>gi|167621113|ref|ZP_02389744.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis Bt4]
          Length = 128

 Score = 40.4 bits (93), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVF 74
            +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V 
Sbjct: 32  FVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVV 91

Query: 75  SNLKEAIADLHFIYATTARNR 95
             L +A+  + +  A TAR+R
Sbjct: 92  PTLADALNGVQWSLALTARSR 112


>gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 223

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           QN   + G E+WGL+ E I++ +  I  P+  +  SLN+S A  ++++E +        +
Sbjct: 114 QNTCFVLGAEKWGLSKEIISMVDQSIFIPMRGMVQSLNVSVAASILLFEAI--------R 165

Query: 179 NVKEQNTPATKGELLSFLDYLEISLE 204
             K +    T GE L+  +Y +   E
Sbjct: 166 QRKNKGKLPTNGEGLNMDEYRKTLFE 191


>gi|17545077|ref|NP_518479.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17427367|emb|CAD13886.1| putative trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 156

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F  +   P +                 +FG E  
Sbjct: 62  SWDAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  A    +  I  P+ P   SLN+S  V ++V+E 
Sbjct: 107 GLSEERRAGFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEA 146


>gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
 gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
          Length = 182

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 14/167 (8%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+I+++D      N+G V R+   F +  + L       P+ +   ++   +
Sbjct: 16  EFKEAEKLPLIVVLDDVRSLYNVGSVFRSADAFRIEAIYLCGITATPPNAEIHKTALGGE 75

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQN 120
             +D  + F   ++A+ DLH    F+Y+      +        K   + LN E   +  +
Sbjct: 76  DSVDW-KYFERTEDAVEDLHKKGVFVYSVEQVEHST-------KLHTLDLNAESTTNNSH 127

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             II G E  G+    + +S+A +  P      SLN+S    +++WE
Sbjct: 128 YAIIMGNEVKGVKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIWE 174


>gi|167720293|ref|ZP_02403529.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei DM98]
          Length = 112

 Score = 40.4 bits (93), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP----SEKARSSSANADCVIDSVRV 73
           +LV+P    N+G  ARA+     ++L LV PR   P      +A + ++ AD V+ S  V
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPR--VPRVQSDPEALAMASGADDVLASAHV 90

Query: 74  FSNLKEAIADLHFIYATTARNR 95
              L +A+  + +  A TAR+R
Sbjct: 91  VPTLADALNGVQWSLALTARSR 112


>gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
           DSM 5476]
 gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
           DSM 5476]
          Length = 172

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 29/178 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74
           I+LV+PQ+ +N G +AR        +L LV P  G+  +  +   A  D    +D +  +
Sbjct: 6   IVLVEPQIPQNTGNIARTC-AATGARLHLVKPL-GFAIDDKKLKRAGLDYWHYLD-ITYY 62

Query: 75  SNLKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             LK+  A     +F Y TT + + N+  V  P  A IV              FGRE  G
Sbjct: 63  DGLKDFFAQNSGGNFYYFTT-KGQANYSEVAYPDNAYIV--------------FGREDAG 107

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN---SIVSSEKNVKEQN 184
           L  E++   N    +  P+     SLN+S  V +  +E +       + S+ N+ + N
Sbjct: 108 LP-EDLLFHNPETCVRLPMRGGIRSLNLSNTVAVATYEVLRQWGFPALESQGNLTKYN 164


>gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320]
 gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320]
 gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP EK R   S +A ++  ++      N    IAD   I    A+      + L+ K  A
Sbjct: 52  WPEEKMRMLVSPAAGSNSWVNV-----NTHPTIADA--INTFRAQGMQVLATHLSDK--A 102

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +   E  ++ Q   II G+E+ G++ E IAL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 103 VDFREIDYT-QPTCIIMGQEKTGISPEAIALADQDIIVPMMGMVQSLNVSVASALILYEA 161

Query: 169 MENSIVSSEKNVKEQNTPATKGELLSF 195
                 +   N  E    A + ++L F
Sbjct: 162 QRQRQAAGMYNRTESALTAEEQQILLF 188


>gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 248

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 12/167 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  + K P+I+ +D      N G ++R      +  + L       PS    S++ NA
Sbjct: 91  PTLYEAGKTPLIVALDGVTDIRNFGAISRTCECAGVDAILL-------PSY--CSATINA 141

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           D V  S      L     D +   A      + F  +   ++A I   ++ +S   V ++
Sbjct: 142 DAVKTSAGALHYLPVCRTD-NLCQAIKFLKNSGFTIIALSEKANIAYTDQDYSSPTV-LV 199

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  G+++E ++L ++ +  PV     SLN+S A  ++++E +++
Sbjct: 200 LGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGIVIYEAVKS 246


>gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 182

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             + + K P++I++D      NIG V R    F + ++ L       P+++   ++  A 
Sbjct: 16  DFKEAEKTPIVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNVG 122
             +       N+ E I +L          + +  SV A +  E AI LN+ ++ + +   
Sbjct: 76  ETV-VWEHHENVLEVIENL----------KKDEISVFAIEQVENAIFLNDFKVEATKKYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +IFG E +G+  E I L +  I  P      SLNIS +  ++VW+
Sbjct: 125 LIFGNEVFGVNQEAIRLCDGTIEIPQLGTKHSLNISVSTGIVVWD 169


>gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 175

 Score = 40.0 bits (92), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 13/164 (7%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + ++K P+I+++D      N+G V R+   F +  + L       PS +   ++  A+
Sbjct: 8   EFKAASKLPLIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAE 67

Query: 66  CVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              DSV  + F+   +AI +LH      A+    F +V     + ++ N     G    +
Sbjct: 68  ---DSVTWKYFAQTTDAIDELH------AKGTKVF-AVEQVAGSTMLQNLDTEVGTRYAV 117

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + G E  G+    + L +  +  P      SLN+S A  ++VWE
Sbjct: 118 VLGNEVKGVQQTVVDLCDGCLEIPQFGTKHSLNVSVAAGIVVWE 161


>gi|258619945|ref|ZP_05714985.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
 gi|258587678|gb|EEW12387.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
          Length = 112

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGELLSFLDYLEI 201
           +  P NP + SLN++ AV L+ +E      S+  S+   +++       EL  F ++LE 
Sbjct: 1   MCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELELFYEHLEK 60

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            + +   F   ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 61  VITQTE-FISAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 106


>gi|225867944|ref|YP_002743892.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701220|emb|CAW98160.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           ++L  PQ+ +N G +AR     N T L ++ P  G+P +  +   A  D      +R + 
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPM-GFPIDDRKMKRAGLDYWDKLDIRFYD 76

Query: 76  NLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERW 130
           +L E +A     LH I                 K A  V +++ ++  Q+   +FGRE  
Sbjct: 77  HLDEFLAQCDGSLHVI----------------SKFADQVYSDKDYNDRQSHYFLFGREDT 120

Query: 131 GLTNEEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169
           GL    +   ++  +  P+N     SLN+S AV ++V+E +
Sbjct: 121 GLPEPFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEAL 161


>gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           Y412MC10]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++      A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFNTDDKTLKRAGLDYWYAVHIEYHD 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F  L+    +  + YATT   +             I   +  F      ++FG+E  GL
Sbjct: 63  SFEELQALYPEGRYFYATTKATKRYMD---------IEYQDGDF------LVFGKETKGL 107

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E +A  +   I  P+     SLN+S +  +MV+E +
Sbjct: 108 PRELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEAL 145


>gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 26/160 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR      +  L LV P  G+ ++ A    A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATGI-HLHLVRPL-GFRTDDATLKRAGLDYWYAVHIEYHD 62

Query: 73  VFSNLKEAIADLHFIYATT-ARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            F  ++E  A   F +ATT A+ R  +FK                F   +   +FG+E  
Sbjct: 63  SFQEVEEKYAGSRFFFATTKAKKRYTDFK----------------FQDGDF-FVFGKETK 105

Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           GL  E + A  +  +  P+     SLN+S +  ++V+E +
Sbjct: 106 GLPPEILEAHPDTTMRMPMTDKVRSLNLSNSAAIIVYEAL 145


>gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
 gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
          Length = 180

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           Q + + K P+I+++D      NIG V R    F + ++ L       P+++   ++  A 
Sbjct: 16  QFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 65  -----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG- 118
                + V +++ V   LKE    ++ I    A N             + +LN+   +G 
Sbjct: 76  DSVAWEYVENTLSVVEKLKEQ--GVYIISIEQAEN-------------STMLNDFQSNGK 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           Q   IIFG E  G+  E ++ S+ +I  P      SLNIS +  + +WE
Sbjct: 121 QKYAIIFGNEVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWE 169


>gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 13/119 (10%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP  + R   SS+A ++  ++ V+   N+ +A+  L       AR      + L+ K  A
Sbjct: 52  WPGNRMRTMASSAAGSNSWVE-VKTHRNISDAVNHL------KARGMQILATHLSDK--A 102

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   E  ++ +   I+ G+E+ G+T E ++L++  I  P+  +  SLN+S A  L+++E
Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITEEALSLADQDIIIPMTGMVQSLNVSVASALILYE 160


>gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           anaerobius 653-L]
 gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           anaerobius 653-L]
          Length = 168

 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 24/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G + R   N    QL L+ P  G+  +         D      I    
Sbjct: 17  IVLVEPEIPHNTGNIIRTCANTG-AQLHLIKPL-GFSLDDKHLKRCGLDYWDIADIKYYD 74

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F  L+E   + ++ YATT   ++          A +  NE  F      ++FG+E  GL
Sbjct: 75  SFEELQEKYPEANYFYATTKTQKSY---------ADVEYNEGCF------LVFGKETKGL 119

Query: 133 TNEEIALSNA-IISFPVNPLFPS--LNISQAVLLMVWECM 169
             + I  +    I  P+  +  +  LN+S +V ++V+E +
Sbjct: 120 PKDLIEKNEGHCIRIPMRGIEGARCLNLSNSVAIVVYEAL 159


>gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter
           thermophilus TK-6]
          Length = 240

 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  G++   + +S+ ++S P+     SLN+S A  + +WEC+  SI+ S
Sbjct: 186 LVLGSEGEGVSKSLLEISDLVLSIPMVGKINSLNVSSAGAIAMWECVRGSIIKS 239


>gi|283782445|ref|YP_003373200.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283440898|gb|ADB19340.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 177

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R    F + L     ++ ++E  F  + V ++ G ER GL++EE++L N  +  PV  L 
Sbjct: 96  RKEGWFLAALEQTTDSVNMHEYQFP-RKVALVIGNERHGLSDEELSLMNVCLEIPVWGLP 154

Query: 153 PSLNISQAVLLMVWE 167
            S N++ A  + ++E
Sbjct: 155 HSYNVANATAMALYE 169


>gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum
           H04402 065]
          Length = 155

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+L  P++ +N G +AR     N ++L L+ P  G+  ++     A  D      +    
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWQYLDLSIYE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  L+E   D +F ++TT  + NNF + +  ++                I+FGRE  GL
Sbjct: 63  SYEELREKYKDSNFYFSTT--HGNNFYTDVKYRDGDF-------------IVFGRESSGL 107

Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169
            +E   +  +  I  P +N    SLN+S  V ++ +E +
Sbjct: 108 PDEIRDSDPSKCIRIPMINTTTRSLNLSNTVAVVTYEAL 146


>gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 235

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 31/171 (18%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82
            N+  V R      + Q+  +     WP +  R   SS+A ++  +  V+  S +++AI 
Sbjct: 31  HNVSAVIRTADAIGIHQIHAI-----WPDQSLRTQLSSAAGSNSWVQ-VQTHSTIQQAIE 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSN 141
                       +++   VLA   +   ++ R I   +   II G+E+ G++ + +AL++
Sbjct: 85  QF----------KSDGMQVLATHLSDKAVDFRQIDYTKPTCIIMGQEKKGISKQAVALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM-----------ENSIVSSEKNVK 181
             I  P+  +  SLN+S A  L+++E             E SI+S E+  K
Sbjct: 135 HDIIIPMAGMVQSLNVSVASALILYEAQRQRQLVGMYQREESILSEEEQQK 185


>gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 206

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 18/178 (10%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +++ K P+I+++D      N+G V R    F +  + L       P+ +   ++   +
Sbjct: 16  EFKDAPKLPLIVVLDDVRSLYNVGSVFRTCDAFRVEAVYLCGITGTPPNAEIHKTALGGE 75

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYA-------TTARNRNNFKSVLAPKEAAIVLNER 114
             +D  R F   ++A+ +LH    F+Y+       T      N K  +   + A  ++  
Sbjct: 76  DSVDW-RYFEKTEDAVQELHDRGYFVYSIEQVEGSTKLFELGNSKFTIHNSKLADAVDTA 134

Query: 115 IFSGQN-----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I + Q+       +IFG E  G+    + +S+  +  P      SLN+S    ++VWE
Sbjct: 135 IENRQSESIFPCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWE 192


>gi|316983221|pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna
           Methyltransferase From Streptococcus Mutans Ua159
 gi|316983222|pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna
           Methyltransferase From Streptococcus Mutans Ua159
          Length = 182

 Score = 39.7 bits (91), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  PQ+  N G +AR     N T L ++ P  G+P +  +   A  D        +  
Sbjct: 20  VVLFQPQIPANTGNIARTCAATN-TSLHIIRPM-GFPIDDKKMKRAGLD-------YWDK 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVG------IIFGRER 129
           L     D+HF  +      N+F ++ + K   I     + +S +N         +FGRE 
Sbjct: 71  L-----DVHFYDSL-----NDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGRED 120

Query: 130 WGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169
            GL  E +   S   +  PVN     SLN+S  V ++V+E +
Sbjct: 121 KGLPEEFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEAL 162


>gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 274

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL +E+ AL++A++  P+     SLN++ A  + ++
Sbjct: 225 VFGNEAWGLRDEDRALADAVVRVPIRGRAESLNLATAATVCLY 267


>gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
          Length = 233

 Score = 39.7 bits (91), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 18/163 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L N      + L    +  NI  V R+     + Q+  V     WP +  R S   A   
Sbjct: 13  LDNRQVDLTVCLDKVHMTNNIAAVLRSADCVGIHQIHAV-----WPDDDMRVSGNTASGS 67

Query: 68  ---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +D+V+ ++          F  A  A  +   + +      + V    I   Q   I+
Sbjct: 68  QQWVDTVKHYT----------FEEAHQAFKKQKMQVLTTTFSDSAVDFREIDYTQPTAIV 117

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G ER G++ E IA ++  I  P+  +  SLN+S A  L+++E
Sbjct: 118 MGNERDGVSAEAIAAADQHIIIPMRGMVQSLNVSVAAALVMYE 160


>gi|326791033|ref|YP_004308854.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           lentocellum DSM 5427]
 gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           lentocellum DSM 5427]
          Length = 163

 Score = 39.7 bits (91), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-VIDSVRVFS 75
           I+L +P++ +N G +AR       T L L+ P  G+  ++ +   A  D   + +V+ + 
Sbjct: 4   IVLHEPEIPQNTGNIARTCAATGAT-LHLIEPL-GFSLDEKQIKRAGLDYWHLVNVQTYK 61

Query: 76  NLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +E +   ++  +Y  T ++R  +  V   +E                I+FG+E  G+ 
Sbjct: 62  DYEEFLEKNNYPKVYMATTKSRQTYTDVSYEEECY--------------IMFGKETAGIP 107

Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169
            EEI L N    I  P+     SLN+S +V ++++E +
Sbjct: 108 -EEILLDNKETCIRVPMISEARSLNLSNSVAIVIYEAL 144


>gi|115522972|ref|YP_779883.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
 gi|115516919|gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
          Length = 153

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R     + +L   +  I   E  ++  +V ++ GRE  G+ +E  A+++A ++ PV P  
Sbjct: 69  RRDQGCRLILLTTKGLISYFEYRYAPSDV-LMLGRESAGVPDEVAAVADARLAIPVKPGL 127

Query: 153 PSLNISQAVLLMVWECMENSIVSSEK 178
            SLNI+ A  ++V E +  ++   E+
Sbjct: 128 RSLNIAVAAAMVVGEALRQTVWQGER 153


>gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 230

 Score = 39.7 bits (91), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 22/147 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82
            NI  V R      + Q+  +     WP+ + +   SS+A ++  +  V+    +++A+ 
Sbjct: 31  HNISAVIRTADAVGVHQVHAI-----WPTSRMKTLVSSAAGSNSWV-QVKTHRTIQDAVG 84

Query: 83  DLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            L          +N    VLA    E A+   E  ++ +   I+ G+E+ G+T E + L+
Sbjct: 85  HL----------KNEGMQVLATNLSEHAVDFREIDYT-RPTCILLGQEKTGITAEALKLA 133

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWE 167
           +  I  P+  +  SLN+S A  L+++E
Sbjct: 134 DRDIIIPMTGMVQSLNVSVASALILYE 160


>gi|290579940|ref|YP_003484332.1| putative rRNA methylase [Streptococcus mutans NN2025]
 gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 28/162 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  PQ+  N G +AR     N T L ++ P  G+P +  +   A  D        +  
Sbjct: 20  VVLFQPQIPANTGNIARTCAATN-TSLHIIRPM-GFPIDDKKMKRAGLD-------YWDK 70

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVG------IIFGRER 129
           L     D+HF  +      N+F ++ + K   I    ++ +S +N         +FGRE 
Sbjct: 71  L-----DVHFYDSL-----NDFMNICSGKLHLITKFADKTYSDENYDDSEHHYFLFGRED 120

Query: 130 WGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169
            GL  E +   S   +  P+N     SLN+S  V ++V+E +
Sbjct: 121 KGLPEEFMRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEAL 162


>gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 234

 Score = 39.7 bits (91), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 27/155 (17%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLK 78
           DP    N+G +AR+   FN   + +   R+   ++    +S  A   +D+V +   +NL 
Sbjct: 100 DPH---NLGAIARSALFFNFDGIIIPKHREALVNDTVYKTSQGA---VDNVNICQVTNLS 153

Query: 79  EAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + I  L     +IYA      N              + +  FSG+ V II G E  G+++
Sbjct: 154 QTIEKLKKAGFWIYAALLEGDN--------------IKDVDFSGK-VAIIIGNEGKGISD 198

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             I  S+  +  P    F SLN S A  ++++E +
Sbjct: 199 NLIKASDFKVKIPNLSEFDSLNASVAAGIIMYEVI 233


>gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 178

 Score = 39.7 bits (91), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 27/171 (15%)

Query: 7   QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           + +++ K P+II++D  +   N+G V R    F + ++ L       P +  R ++  A 
Sbjct: 18  EFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPPHKDIRKTALGAT 77

Query: 65  -----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNE-RIF 116
                + V D+V +   LKE                 +   +LA ++A  AI+LN  +  
Sbjct: 78  ETVVWEYVNDTVALVERLKE-----------------DHVKILAIEQAEDAIMLNTFKPE 120

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 ++FG E  G+  + ++ S+A+I  P      SLNIS +V +++W+
Sbjct: 121 PNTTYAVVFGNEVKGVQQDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMWD 171


>gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
 gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
          Length = 191

 Score = 39.7 bits (91), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 12/160 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++L D +   N+G V R+   F +  + L       P+ +   ++   +   DSV  R F
Sbjct: 27  VVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGE---DSVAWRYF 83

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGR 127
           ++ +EA+ +LH    F+Y+      +     L P+  A+   E   S    ++  +I G 
Sbjct: 84  AHTEEAVEELHRRGVFVYSVEQVEGSTKLQDLTPRLPAVSREEGENSPAGDRHYALILGN 143

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E  G+    + +S+  +  P      SLN+S    +++WE
Sbjct: 144 EVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWE 183


>gi|332654005|ref|ZP_08419749.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332517091|gb|EGJ46696.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 171

 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 30/175 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFS 75
           I+LV+P++ +N G +AR       ++L L+ P     SEKA R +  +   ++D +RV+ 
Sbjct: 4   IVLVEPEIPQNCGNIARTC-AATRSRLHLIEPLGFDISEKAVRRAGLDYWPMVD-LRVYR 61

Query: 76  NLKEAIADLHFIYATTARNRNN---FKSVLAPKEAAIVLNERIFSG----QNVGIIFGRE 128
           NL+      HF     A N N      +  AP++         ++G     N  + FG+E
Sbjct: 62  NLE------HFF----AENPNPDLWLATTKAPQD---------YTGATFRDNCYLFFGKE 102

Query: 129 RWGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             GL  E  +A  +  I  P+     SLN+S +V ++ +E +          V E
Sbjct: 103 TAGLPEEFRLAHYDRCIRIPMRADARSLNLSNSVAILAYEALRQQGFPQLSGVGE 157


>gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus]
          Length = 144

 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 22/156 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++      A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFNTDDKTLKRAGLDYWYAVHIEYHD 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F  L++   +  F Y +T   +         +   I   +  F      ++FG+E  GL
Sbjct: 63  SFEELQQKYPEGRFFYTSTKATK---------RYCDIAFQDGDF------LVFGKETKGL 107

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWE 167
             E +A + ++ I  P+     SLN+S +  ++V+E
Sbjct: 108 PPELLAANPDSCIRMPMTDKVRSLNLSNSAAIIVYE 143


>gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
 gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73
           V++L D +   N+G V R+   F +  + L       P+ +   ++   +   DSV  R 
Sbjct: 29  VVVLDDVRSLYNVGSVFRSGDAFRIEGIYLCGITATPPNAEIHKTALGGE---DSVAWRY 85

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRER 129
           FS  ++A+ +L        ++ + F   +   E +I L +    +    +   ++FG E 
Sbjct: 86  FSRAEDAVTEL--------QSHDYFVYSIEQVEGSIKLQDLTIDKTSQAKGYAVVFGNEV 137

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G+  E + +S+  +  P      SLN+S    +++WE
Sbjct: 138 KGVKQEVVNMSDGCLEIPQFGTKHSLNVSTTAGIVMWE 175


>gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 270

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 12/165 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            LQ   KG ++IL   Q+  NIG V R+        + +   R      K   +S  +  
Sbjct: 115 HLQPRQKGTLLILDGLQIPGNIGTVIRSADGAGAHGIIITQSRQRLTHPKLVRASMGSLF 174

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  V   S+++ A A L          R  ++ V     A +   +  +S +   I+ G
Sbjct: 175 ALPIVE--SDVETAYAWL---------KRYGYQVVTTSPRARVSFRQARYSTRTA-IVMG 222

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ER G++ +  A  +  +S P++    SLN+  A +LM++E +  
Sbjct: 223 NEREGVSEDWFARHDLSVSIPMHGRADSLNVGNAAVLMLYEVLHQ 267


>gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 178

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 25/170 (14%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           Q + + K P+I+++D      NIG V R+   F + ++ L       P +  + ++  A 
Sbjct: 18  QFKKAEKTPIIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGAT 77

Query: 65  -----DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FS 117
                + V ++V +   LK E I     +YA            +   E A +LN+ +   
Sbjct: 78  DTVTWEYVENTVSLVKKLKAEGIK----VYA------------IEQAEGATMLNDFVPEK 121

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            Q   ++FG E  G+  E ++ S+A+I  P      SLNIS +  +++W+
Sbjct: 122 HQTTAVVFGNEVKGVQQEVVSASDAVIEIPQLGSKHSLNISVSTGVVLWD 171


>gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
 gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
          Length = 175

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 23/172 (13%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+I+++D      NIG V R    F + ++ L       P+++   ++  A 
Sbjct: 16  EFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 66  CVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSG 118
             +      D + V   LK+    ++ +  T               E AI+L++ +  + 
Sbjct: 76  ETVTWEYAKDVLEVVHQLKQENVKVYSVEQT---------------ENAIMLDDFQPETN 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
               +IFG E  G++ E I LS+ +I  P      SLNIS +  +++W+  +
Sbjct: 121 TKYALIFGNEVKGVSQEAINLSDGVIEIPQLGSKHSLNISVSAGIVIWDLFQ 172


>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
          Length = 1145

 Score = 39.3 bits (90), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 15  PVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-----------ARSSSA 62
           P+++L+D  +   NIG + R    F +  L L N      S +           +R +  
Sbjct: 321 PIVVLLDGVENPMNIGSIVRTCAGFGVETLYLFNQEGASASGRVNPFSTASYLSSRGAIE 380

Query: 63  NADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + D +  + R  + N+ +  A+  +   +TA   ++    L  + +A+ L  +       
Sbjct: 381 HLDVIPITARNTAINMIKEFAEQKWEIVSTATAISDKALTLFSEGSALTLGTKPLL---- 436

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            +IFG E  G+      LS A ++ P   L  SLN+SQ+  +++ EC
Sbjct: 437 -LIFGSESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAAIILAEC 482


>gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 223

 Score = 39.3 bits (90), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           QN   + G E+WGL+NE  ++ +  I  P+  +  SLN+S A  ++++E +
Sbjct: 114 QNTCFVLGAEKWGLSNELKSMVDQSIFIPMRGMVQSLNVSVAASILLFEAV 164


>gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 156

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G + R   N +  QL L+ P  G+P + A+   A  D     +++V+ 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCAN-SGAQLHLIEPL-GFPLDDAKMRRAGLDYHEFATMKVYK 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           N    L++   D   ++A T R  + F ++   P +                 IFG E  
Sbjct: 62  NWNDFLEKMTPDPSRMFAFTTRGSSIFSTLEFRPGDM---------------FIFGSETK 106

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  A       +  P+ P   SLN+S +V + V+E 
Sbjct: 107 GLSPEIHAFFQDGHRVRLPMRPDNRSLNLSNSVAIAVYEA 146


>gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 294

 Score = 39.3 bits (90), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +R   G     IFG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 232 DRGTMGGPTAWIFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 285


>gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium
           praevalens DSM 2228]
          Length = 161

 Score = 39.3 bits (90), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 27/173 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVF 74
           I+LV+P++ +N G +AR     N T L LV P     S+K   R+     D +   V+ +
Sbjct: 3   IVLVEPEIPQNTGNIARTCAVTNST-LHLVRPLGFSTSDKYLKRAGLDYWDKL--DVKYY 59

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            NL +      D  F YATT           AP   + +  E      +   +FG+E  G
Sbjct: 60  DNLTDFFIKNKDGRFFYATTK----------APNSYSDLEYE-----ADDYFLFGKETAG 104

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVK 181
           L  E +  SN    I  P+     SLN+S +V ++++E + +N+ ++  K  K
Sbjct: 105 LP-ESLLESNLDKAIRIPMKDDLRSLNLSNSVSIIIYEALRQNNFINLNKKGK 156


>gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score = 39.3 bits (90), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           IFG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 225 IFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 271

 Score = 39.3 bits (90), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL +E++AL++A +  P+     SLN++ A  + ++
Sbjct: 222 VFGNEAWGLRDEDLALADATVRVPLRGRAESLNLATAATVCLY 264


>gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 184

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 8   LQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            + + K PV+IL+D    +N +G V R    F + ++ L        + +   ++  A+ 
Sbjct: 20  FKKAPKLPVVILLDHVRSQNNVGSVFRTSDAFRIEKIFLCGITSTPENREVHKTALGAED 79

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGI 123
            +D   V  +  EA+  L          +  ++ + A ++A    +   FS   GQ   +
Sbjct: 80  AVDWEYV-KDTTEAVDRL---------KKEGYR-IFAIEQAENTTSLENFSLSPGQKYAL 128

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           IFG E  G+  E I LS+  I  P      S NIS  V +++W+ +
Sbjct: 129 IFGNEVKGVQQEVIDLSDGCIEIPQFGTKHSFNISVTVGIVLWQII 174


>gi|220931942|ref|YP_002508850.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
           H 168]
 gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
           H 168]
          Length = 162

 Score = 38.9 bits (89), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 28/161 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+LV+P++ +N G +AR       + L L+ P  G+  +      A  D   D + ++  
Sbjct: 3   IVLVEPEIPQNTGNIARTCA-VTGSSLHLIEPL-GFSIDDRYLKRAGLD-YWDKLDIYYY 59

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L +   D +F +ATT           APK   IV  +     +N  I+FG+E  G
Sbjct: 60  DSLEELMKKYKDSNFYFATTK----------APKSYDIVSYQ-----ENDFIVFGKETAG 104

Query: 132 LTNEEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECM 169
           L   E  L N I   I  P+     SLN+S +V ++++E +
Sbjct: 105 LP--ESLLKNNIENCIRIPMKDNTRSLNLSNSVAIILYEAL 143


>gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str.
           Langeland]
 gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           F str. Langeland]
 gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           F str. 230613]
          Length = 155

 Score = 38.9 bits (89), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+L  P++ +N G +AR     N ++L L+ P  G+  ++     A  D      +    
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWQYLDLSIYE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  L+E   D +F ++TT  + NNF + +   +                I+FGRE  GL
Sbjct: 63  SYEELREKYKDSNFYFSTT--HGNNFYTDVKYSDGDF-------------IVFGRESSGL 107

Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169
            +E + +  +  I  P +N    SLN+S  V ++ +E +
Sbjct: 108 PDEIKDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEAL 146


>gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074]
          Length = 275

 Score = 38.9 bits (89), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           IFG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 224 IFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 266


>gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
 gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
          Length = 180

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 15/165 (9%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           Q + + K P+I+++D      NIG V R    F + ++ L       P+++   ++  A 
Sbjct: 16  QFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 66  CVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVG 122
              DSV      N   A+  L        + +  +   +   E + +LN+   +G Q   
Sbjct: 76  ---DSVAWEYVENTLSAVEKL--------KEQGVYIISIEQAENSTMLNDFQPNGKQKYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           IIFG E  G+  E ++ S+ +I  P      SLNIS +  + +WE
Sbjct: 125 IIFGNEVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWE 169


>gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score = 38.9 bits (89), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           IFG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 224 IFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 266


>gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14]
 gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14]
          Length = 286

 Score = 38.9 bits (89), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 28/43 (65%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  +  AL++A++  P++ +  SLN++ A  + ++
Sbjct: 226 VFGNEAWGLPEDTRALADAVVRVPIHGMAESLNLATAAAVCLY 268


>gi|149186958|ref|ZP_01865266.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
 gi|148829347|gb|EDL47790.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
          Length = 150

 Score = 38.9 bits (89), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N+G V R +       + L+ P  G+P +  R   A  D  ID V V   
Sbjct: 3   IALFEPEIAGNVGNVMR-LGACMGAGVDLIEPL-GFPWDDRRVRRAAMD-YIDHVEVVRH 59

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F   + A A    +  TT   ++++     P +                ++FG+E  G
Sbjct: 60  VSFEAFRAARAGQRLVLFTTRATQSSYDFAYRPDDI---------------LLFGKESAG 104

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +T+   A  +A +  P+ P   SLN++ +  L + E +  +
Sbjct: 105 VTDAVRACVDASVRLPMKPEVRSLNLATSAGLALGEALRQT 145


>gi|91975781|ref|YP_568440.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB5]
 gi|91682237|gb|ABE38539.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB5]
          Length = 150

 Score = 38.9 bits (89), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P + +N G + R     NL +  ++ P  G+P+       A  D  +D V +  +
Sbjct: 3   IALYQPDIPQNTGTLLRFCACLNL-EAHIIEP-AGFPTSDRHFRRAGMD-YLDQVTILRH 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              +     F+     R   + + +L   +      E+ +   +V ++ GRE  G+ +E 
Sbjct: 60  DSWS----KFV---QWRKEADCRVILLTTKGVTPYLEQRYQSTDV-LLLGRESAGVPDEV 111

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            A ++A +  P+ P   SLN++ A  L+V E +  +
Sbjct: 112 AAAADARVLIPMQPKMRSLNVAMAAALVVGEALRQT 147


>gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
 gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
          Length = 280

 Score = 38.9 bits (89), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           LA  ++A+ LN+ +  G+   + FG E +GL  + I   +     P++    SLN++ + 
Sbjct: 211 LALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACDITTIIPMSHQVDSLNVAASS 270

Query: 162 LLMVWE 167
            +  WE
Sbjct: 271 AVAFWE 276


>gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           Bf]
 gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657]
 gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           Bf]
 gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 155

 Score = 38.9 bits (89), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+L  P++ +N G +AR     N ++L L+ P  G+  ++     A  D      +    
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWQYLDLSIYE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  L+E   D +F ++TT  + NNF + +   +                I+FGRE  GL
Sbjct: 63  SYEELREKYKDSNFYFSTT--HGNNFYTDVKYSDGDF-------------IVFGRESSGL 107

Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169
            +E   +  +  I  P +N    SLN+S  V ++ +E +
Sbjct: 108 PDEIRDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEAL 146


>gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
 gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
          Length = 787

 Score = 38.9 bits (89), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 32/187 (17%)

Query: 11  SAKGPVIILVD----PQLGENIGMVARAMWNFNLTQLRLVNPRDG-------WPSEKARS 59
           S   PV++L+D    PQ   NIG + R+   F +  +  VN  D        + +E  RS
Sbjct: 502 SGSKPVVLLLDGIENPQ---NIGAIIRSAVLFGVESVIFVNEFDKKTGSINPYSAESYRS 558

Query: 60  SSANAD-CVIDSVRVFSNLKEAIADL---HFIYATTARNR-----------NNFKSVLA- 103
           S    + C I  + +  +  E + +     +   TTA N+             FK + + 
Sbjct: 559 SRGAVEYCNISQLYLRRDAAEVLDEFVENGWEVVTTASNKLIDDNADNGIVEQFKPLKSL 618

Query: 104 PKEAAIVLNE--RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
            K  ++  +E  R+   + + ++ G E  G++      S   IS P   L  SLN+SQA 
Sbjct: 619 TKNISLYSDESNRVLGLKPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNVSQAS 678

Query: 162 LLMVWEC 168
            +++ EC
Sbjct: 679 SIILGEC 685


>gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 296

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G     IFG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 234 GTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 282


>gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister
           microaerophilus UPII 345-E]
 gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister
           microaerophilus UPII 345-E]
 gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 170

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 24/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G ++R     +LT L LV P  G+  +      A  D      I   +
Sbjct: 3   IVLVEPEIPGNTGNISRLCAAEHLT-LHLVEPL-GFSIDDKHLKRAGLDYWKFLDIHIHK 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F ++K+ +    F Y TT              +A  V  +  +   +V ++FG+E  GL
Sbjct: 61  NFESVKQMLKGKRFFYNTT--------------KAKHVYTDISYKEDDV-LVFGKETKGL 105

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             EE+ L N  + I  P+     SLN+S AV ++  E +  +
Sbjct: 106 P-EELLLENQDSCIRIPMVEEARSLNLSNAVAIVALEALRQT 146


>gi|304399040|ref|ZP_07380909.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
 gi|304353500|gb|EFM17878.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
          Length = 221

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 52  WPSEKARSSSANADCVIDSVRVFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
           WPS++ R+ ++ +      V+V ++  + +A+  L          +     VLA   +A 
Sbjct: 41  WPSQRMRTQASASAGSNSWVKVVTHPTIGDAVKQL----------KQQKMQVLATHLSAD 90

Query: 110 VLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            ++ R I       I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 91  AVDFREIDYTLPTCILMGQEKTGITEEALALADRQIVIPMVGMVQSLNVSVACALILYE 149


>gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 286

 Score = 38.5 bits (88), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 228 VFGNEAWGLPEETRALADAVVRVPIHGHAESLNLATAAAVCLY 270


>gi|319938705|ref|ZP_08013069.1| TrmH family RNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319811755|gb|EFW08021.1| TrmH family RNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 170

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L +PQ+ +N G +AR     N + L ++ P  G+P +  +   A  D      +  + 
Sbjct: 8   IVLFEPQIPQNTGNIARTCAATN-SPLHIILPM-GFPIDDRKMKRAGLDYWDKLDITYYD 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTN 134
           NL+E ++ +            + +  L  K A  V  E  F +  N   +FGRE  GL  
Sbjct: 66  NLEEFMSKM------------DGQLYLISKFAEKVYVEENFATAGNHYFMFGREDKGLPE 113

Query: 135 EEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169
           + + A S   +  P+N     SLN+S  V ++V+E +
Sbjct: 114 DFMRAHSEKALRIPMNDEHVRSLNLSNTVCMLVYEAL 150


>gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
 gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
          Length = 231

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 20/146 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82
            N+  + R      + Q+  V     WP+ + R   SS+A ++  ++ V+    + +A+ 
Sbjct: 31  HNVSAIIRTADAVGVHQVHAV-----WPTSRMRTLVSSAAGSNSWVN-VKTHRTISDAVT 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSN 141
            L          ++    +LA   +A  ++ R +   +   ++ G+E+ G+T E +AL++
Sbjct: 85  HL----------KDQGMQILATHLSARAVDFREVDYTRPTCVLLGQEKTGITEEALALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWE 167
             I  P+  +  SLN+S A  L+++E
Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYE 160


>gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
 gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
          Length = 181

 Score = 38.5 bits (88), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 22/160 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L D +   N+G V R+   F +T + L       P+ +   ++   +  +D  + F 
Sbjct: 26  VVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTALGGEDSVDW-KYFE 84

Query: 76  NLKEAIADLH----FIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + ++AI  LH    ++Y       +    N +S L              + Q+  II G 
Sbjct: 85  HTEDAIKALHSQGYYVYCVEQVEGSTKLQNLQSTLD-------------TTQHYAIIMGN 131

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E  G+    + LS+  +  P      SLN+S    +++WE
Sbjct: 132 EVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSTTAGIVIWE 171


>gi|86748324|ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gi|86571352|gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 150

 Score = 38.5 bits (88), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P + +N G + R     N+ +  ++ P  G+P+       A  D  +D + +  +
Sbjct: 3   IALYQPDIPQNTGTLLRFCACLNV-EAHIIEPA-GFPTSDRHFRRAGMD-YLDQITIVRH 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                 D    +    ++ +    +L  K     L +R +   +V ++ GRE  G+ +E 
Sbjct: 60  ------DSWSKFEQWRKDADCRVILLTTKGVTPYLEQR-YQSTDV-LLLGRESAGVPDEV 111

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            A ++A I  P+ P F SLN++ A  L+V E +  +
Sbjct: 112 AAAADARIVIPMQPGFRSLNVAMAAALVVGEALRQT 147


>gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
 gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
          Length = 176

 Score = 38.5 bits (88), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+++++D      NIG V R    F +  + L       P  +   ++  A+
Sbjct: 17  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTALGAE 76

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124
             +D  +  +N  EA+ +L        +N       +   E +I+LNE      +   I+
Sbjct: 77  FTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKNRKYAIV 127

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G E  G+  E I  S+  I  P      SLN+S    +++W+
Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWD 170


>gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 216

 Score = 38.5 bits (88), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G E+ G+++E + L++ +I  P+  +  SLN+S A  L+++E
Sbjct: 127 IVMGNEKDGVSSETVELADTVIIIPMQGMVQSLNVSVAAALILYE 171


>gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 281

 Score = 38.5 bits (88), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G     IFG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 219 GTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC
           3502]
 gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall]
 gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra]
 gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto]
 gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
 gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 155

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+L  P++ +N G +AR     N ++L L+ P  G+  ++     A  D      +    
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWQYLDLSIYE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  L+E   D +F ++TT  + NNF + +   +                I+FGRE  GL
Sbjct: 63  SYEELREKYKDSNFYFSTT--HGNNFYTDVKYSDGDF-------------IVFGRESSGL 107

Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169
            +E   +  +  I  P +N    SLN+S  V ++ +E +
Sbjct: 108 PDEIRDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEAL 146


>gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 296

 Score = 38.5 bits (88), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 236 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLY 278


>gi|311277429|ref|YP_003939660.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
 gi|308746624|gb|ADO46376.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
          Length = 229

 Score = 38.5 bits (88), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 17/122 (13%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106
           WP  + R   S++A ++  + SV+    + +A+A L          +     +LA    +
Sbjct: 52  WPGNRMRTMASTAAGSNSWV-SVKTHRTIGDAVAQL----------KGRGMQILATHLSD 100

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +A+   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++
Sbjct: 101 SAVDFREIDYT-RPTCILMGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILY 159

Query: 167 EC 168
           E 
Sbjct: 160 EA 161


>gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
 gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
          Length = 229

 Score = 38.5 bits (88), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 13/119 (10%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP  + R   SS+A ++  ++ V+   N+ +A+  L       AR      + L+ K  A
Sbjct: 52  WPGNRMRTMASSAAGSNSWVE-VKTHRNIGDAVGHL------KARGMQILATHLSDK--A 102

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   E  ++ +   I+ G+E+ G+T E + L++  I  P+  +  SLN+S A  L+++E
Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITEEALRLADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           papyrosolvens DSM 2782]
          Length = 164

 Score = 38.5 bits (88), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-VRVFS 75
           I+LV+P++ +N G + R       T L LV P  G+  E      A  D   ++ VR ++
Sbjct: 5   IVLVEPEIPQNTGNIVRTCAATG-TVLHLVGPL-GFSIEDKYLKRAGLDYWDEADVRYYN 62

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           N+ E          Y +T +  NN+  V    ++               I+FG+E  GL 
Sbjct: 63  NINEFFEKFPGKTFYYSTTKAVNNYCDVQFEDDSF--------------ILFGKETAGLP 108

Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECM 169
            EE+   N    I  P+     SLN+S +V ++++E +
Sbjct: 109 -EELLRDNKEYCIRIPMKKGIRSLNLSNSVAIVLYEAL 145


>gi|329296824|ref|ZP_08254160.1| tRNA guanosine-2'-O-methyltransferase [Plautia stali symbiont]
          Length = 239

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 17/121 (14%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106
           WPS + R   S+SA ++  +  V+   ++ +A+  L          ++    VLA    +
Sbjct: 38  WPSVRMRTMVSASAGSNSWV-KVKTHRHIADAVRHL----------KDRGMQVLATHLSD 86

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            A+   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++
Sbjct: 87  KAVDFREIDYT-KPTCILMGKEKTGITAEALALADRDIIIPIVGMVQSLNVSVASALILY 145

Query: 167 E 167
           E
Sbjct: 146 E 146


>gi|317494702|ref|ZP_07953114.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917304|gb|EFV38651.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 230

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 20/146 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82
            N+  V R      + Q+  V     WP +  R   S++A ++  + SV+   ++  A++
Sbjct: 31  HNVSAVIRTADAVGVHQVHAV-----WPGKTMRTMVSTAAGSNSWV-SVKTHPDISSAVS 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSN 141
            L          +     +LA   ++  ++ R I   +   I+ G+E++G+T E +AL++
Sbjct: 85  TL----------KAEGMQILATNLSSTAVDFREIDYTRPTCILMGQEKYGITAEALALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWE 167
             I  P+  +  SLN+S A  L+++E
Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYE 160


>gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
 gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
          Length = 181

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 16/156 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L D +   N+G V R+   F ++ + L       P  +   ++  A+  I + R F+
Sbjct: 27  VVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTALGAEESI-AWRYFA 85

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +EA+ +L     F+Y+      +        K   + L  R    Q   ++ G E  G
Sbjct: 86  TAEEAVRNLQTKGFFVYSIEQAEGST-------KLHHLTLERR----QKYAVVLGNEVKG 134

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +    + LS+  +  P      SLN+S A  ++VWE
Sbjct: 135 VHQSVVDLSDGCLEIPQWGTKHSLNVSVAAGMVVWE 170


>gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 283

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 222 VFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 264


>gi|260892338|ref|YP_003238435.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
           KC4]
 gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
           KC4]
          Length = 152

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++      A  D      I    
Sbjct: 3   IVLVEPEIPANTGNIARTCAATGAT-LHLVRPL-GFYTDDRHLRRAGLDYWHLVKIYYHD 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F++L  A  D  F + TT R    +  V  P  + +V              FG+E  GL
Sbjct: 61  SFADLCRAYPDACF-FLTTTRAERWYTQVRYPPGSFLV--------------FGKESTGL 105

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E + A  +  I  P+ P   SLN++ AV ++++E +  
Sbjct: 106 PEEILQAFPDRWIRIPMVPGARSLNLANAVAIVLYEALRQ 145


>gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
           15579]
 gi|187774123|gb|EDU37925.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
           15579]
          Length = 160

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+L  P++ +N G +AR     N ++L L+ P  G+  ++     A  D      +    
Sbjct: 10  IVLFQPEIPQNTGNIARTCVLTN-SRLHLIKPL-GFSLDEKHLRRAGLDYWKYLDLTIYE 67

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  L+E   D +F ++TT  + NNF + +   +                I+FGRE  GL
Sbjct: 68  SYEELREKYKDSNFYFSTT--HGNNFYTDVKYSDGDF-------------IVFGRESSGL 112

Query: 133 TNE-EIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169
            +E   +  +  I  P +N    SLN+S  V ++ +E +
Sbjct: 113 PDEIRDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEAL 151


>gi|24380081|ref|NP_722036.1| putative rRNA methylase [Streptococcus mutans UA159]
 gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159]
          Length = 182

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  PQ+  N G +AR     N T L ++ P  G+P +  +   A  D   D +     
Sbjct: 20  VVLFQPQIPANTGNIARTCAATN-TSLHIIRPM-GFPIDDKKMKRAGLD-YWDKL----- 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVG------IIFGRER 129
                 D+HF  +      N+F ++ + K   I     + +S +N         +FGRE 
Sbjct: 72  ------DVHFYDSL-----NDFMNICSGKLHLITKFANKTYSDENYDDSEHHYFLFGRED 120

Query: 130 WGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169
            GL  E +   S   +  P+N     SLN+S  V ++V+E +
Sbjct: 121 KGLPEEFMRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEAL 162


>gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 279

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 225 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|289803175|ref|ZP_06533804.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 115

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTP-ATKGELLSFLDYLE 200
           ++   NP + SLN++ AV ++ +E     + + E       + TP     +L  F  +LE
Sbjct: 4   VAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGHLE 63

Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 64  QTLLSTGFIRE-NHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 110


>gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
 gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 12/146 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  + R+     +  +  V P  G   ++  SS++          +   +++AIA   
Sbjct: 31  HNLSAIVRSADAVGIHHIHSVWPEGG---KRLTSSTSGGSKNWTENHIHHTVEDAIA--- 84

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                T R+R     +LA   +   ++ R I   +   II G+E++G++++ +AL++  I
Sbjct: 85  -----TIRSRTPNVQILATHFSEQAVDFRAIDYTRPTAIILGQEKFGISDQALALADQHI 139

Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170
             P+  +  SLN+S A  ++++E  +
Sbjct: 140 IIPMVGMVQSLNVSVAAAIILYEAQK 165


>gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           HGF5]
 gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           HGF5]
          Length = 187

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++      A  D      I+   
Sbjct: 38  IVLVEPEIPANTGNIARTCAATG-THLHLVRPL-GFNTDDKTLKRAGLDYWYAVHIEYHD 95

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F  L+    +  + YATT   +         +   I   +  F      ++FG+E  GL
Sbjct: 96  SFEELQALYPEGRYFYATTKATK---------RYMDIEYQDGDF------LVFGKETKGL 140

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E +A  +   I  P+     SLN+S +  +MV+E +
Sbjct: 141 PPELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEAL 178


>gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 189

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 23/169 (13%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           + + + K P+I+++D      NIG V R    F + ++ L       P +  + ++  A 
Sbjct: 18  EFKEARKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTALGAT 77

Query: 65  -----DCVIDSVRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                + V D++ +   LKE  I       A  A   NNFK  +               G
Sbjct: 78  ETVVWEHVEDTLDLVEKLKEDNIKVFSIEQAEGAVMLNNFKPEI---------------G 122

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + + +IFG E  G+  + ++ S+ +I  P      SLNIS +  +++W+
Sbjct: 123 EKIAVIFGNEVKGVQQKVVSASDGVIEIPQAGSKHSLNISVSTGVILWD 171


>gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17]
 gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17]
          Length = 178

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/166 (19%), Positives = 72/166 (43%), Gaps = 17/166 (10%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+++++D      N+G V R+   F +  + L       P+ +   ++   +
Sbjct: 16  EFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGE 75

Query: 66  CVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +D  + F+  +EA+    AD +F+Y+      +     L  ++           GQ  
Sbjct: 76  DSVDW-KYFATTEEAVNQLKADGYFVYSIEQVEGSTKLQRLETEQ-----------GQRY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            ++FG E  G++   + L +  +  P      SLN+S    +++WE
Sbjct: 124 AVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWE 169


>gi|154484057|ref|ZP_02026505.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
           27560]
 gi|149735099|gb|EDM50985.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
           27560]
          Length = 164

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 26/160 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           +IL++P++ +N G + R       T+L L+ P  G+   +     A  D   D  V ++ 
Sbjct: 3   VILLEPEIPQNTGNIGRTCCATG-TKLHLIEPM-GFRINEKNLKRAGMDYWDDLDVTIYD 60

Query: 76  NLKEAIADLH---FIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + K+ + D H    I+  T +  + +  V   P +                I+FG+E  G
Sbjct: 61  SFKDFM-DQHPGIKIWMATTKAPHRYTDVEFGPDDY---------------IMFGKESAG 104

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169
           +  EEI + N    I  P+NP   SLN++ +V ++++E +
Sbjct: 105 IP-EEILVDNEDTCIRIPMNPEIRSLNLANSVAIVLYEAL 143


>gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 230

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 11/118 (9%)

Query: 52  WPSEK--ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
           WP+ +   R SSA        V+  +++ +AIA L       ++N     + L+  + A+
Sbjct: 52  WPTTQMYTRLSSAAGSNSWVQVKTHTHISDAIAHL------KSQNMQILATHLS--DNAV 103

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 104 DFREIDYT-RPTCILMGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 254

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E  GLT +E+AL++A++  P+     SLN++ A  + ++
Sbjct: 202 VFGTEAQGLTADELALADAVVRVPLRGHAESLNVAMAATVCLY 244


>gi|325690961|gb|EGD32961.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK115]
          Length = 184

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 16/156 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P  G+P +  +   A  D   D + +   
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPIDDRKMKRAGLD-YWDKLNI--T 76

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-IIFGRERWGLTNE 135
             E++ D  F+     R        L  K A  V +E  F+ +     +FGRE  GL  E
Sbjct: 77  YYESLGD--FMEQMDGR------LYLISKFAEKVYSEEKFAAEGSHYFMFGREDKGLPEE 128

Query: 136 EIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECM 169
            +       +  P+N     SLN+S AV ++V+E +
Sbjct: 129 FMRRHPEKALRIPMNDQHVRSLNVSNAVCMIVYEAL 164


>gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C]
 gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C]
          Length = 287

 Score = 38.1 bits (87), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 227 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 269


>gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
 gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
          Length = 261

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I+ G E  GL+N  I+L++ ++S P+ P   SLN++ A  L+++E     I
Sbjct: 209 ILLGNEGSGLSNSLISLADNLVSIPLGPGVESLNVAIATALLLYEAKRQKI 259


>gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 287

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 227 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLY 269


>gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 279

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 225 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|315637042|ref|ZP_07892265.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
 gi|315478578|gb|EFU69288.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
          Length = 154

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++P++  N+G + R  +  N  +L L+ P       +     A  D   D + VF  
Sbjct: 4   IVLLEPRIPGNVGTIGRLCFALN-CKLHLIKPYGFGEITEKEVRRAGLDYWYD-LEVFE- 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGLTN 134
             E I D        ++N  N +  LA  +   V  +  F   NVG    FGRE  GL  
Sbjct: 61  -YENIEDF------WSKNPFNDRHFLATTKTKNVYFDAKF---NVGDYFYFGREDAGLPE 110

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++  S+  I+ P+     SLNI+ +V ++ +E +  +  S
Sbjct: 111 DLLSKSSHTCITIPMTNEARSLNIANSVSIVAYEALRQNFTS 152


>gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 288

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 228 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 270


>gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus]
          Length = 308

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G     +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 246 GTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 294


>gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 289

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 229 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLY 271


>gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 152

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 24/159 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++ +N G +AR       T L LV P  G+         A  D   D V V   
Sbjct: 3   IVLVEPEIPQNTGNIARTC-ALTKTALHLVKPL-GFSLADRFLKRAGLD-YWDKVEVQLW 59

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +L EA     F  ATT R    +  V  P+++ +V              FGRE  G
Sbjct: 60  ESFGDLLEANPGAAFYLATT-RAGQAYHQVSYPQDSWLV--------------FGRESSG 104

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           L    + +  +  I  P+  +  SLN+S +V ++++E +
Sbjct: 105 LPISILKSFPDTQIRIPMQDIGRSLNLSNSVAIILYEAL 143


>gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 224

 Score = 38.1 bits (87), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +N   + G E+WGL++E I+  +  I  P+  +  SLN+S A  ++++E +    + S
Sbjct: 113 AENTCFVLGAEKWGLSDELISKVDESIFIPMTGMVQSLNVSVAASILLFEAIRQRQIKS 171


>gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 267

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           N+ IIFG E  G++N    ++N II+ P+     SLN+S A+ ++++E
Sbjct: 209 NLAIIFGSENKGISNIWFNIANKIITIPMFGNVDSLNVSHAMSIIIYE 256


>gi|187476751|ref|YP_784775.1| RNA methyltransferase [Bordetella avium 197N]
 gi|115421337|emb|CAJ47842.1| putative RNA methyltransferase [Bordetella avium 197N]
          Length = 156

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 21/157 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +ILV P++  N G   R   N    QL LV P  G+  +  R   A  D      ++V  
Sbjct: 4   VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPL-GFELDDTRLRRAGLDYHEWQPMKVHD 61

Query: 76  NLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132
           +L  A+A      AT A     F  +    + AA +  +R  +F       +FGRE  GL
Sbjct: 62  DLPAALA------ATGAPPERIFALTTQGARSAAGMQYQRGDVF-------VFGRETAGL 108

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + E +AL      +  P+ P   SLN+S AV + V+E
Sbjct: 109 SPEHVALFAPGQRLRLPMRPGQRSLNLSNAVAVTVFE 145


>gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22]
 gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22]
          Length = 175

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 5   APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           A + +   K P V++L D +   NIG V R    F +  + L       P  +   ++  
Sbjct: 14  AEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122
           A+  +D  +  +N  +A+ +L        +N       +   E +I+L+E ++   +   
Sbjct: 74  AEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMLDELQLDKTKKYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G E  G+  E I  S+  I  P      SLN+S    +++W+
Sbjct: 125 IVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWD 169


>gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 279

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 225 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|331217471|ref|XP_003321414.1| hypothetical protein PGTG_02456 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300404|gb|EFP76995.1| hypothetical protein PGTG_02456 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1002

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 28/110 (25%)

Query: 50  DGW----PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP- 104
           D W    P EK +S++ N+ C        + LK  IAD H ++ T  +N NN    L P 
Sbjct: 848 DQWDKLPPREKLKSAAVNSRC--------TQLKYWIADQHVVFCTMKKNENNCVVALKPN 899

Query: 105 -KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153
            K +  ++NE          IF   R  +T   +AL++  ++  + PL P
Sbjct: 900 LKASYGIINE----------IFQHSR--VTPSNVALTDTWVA--IRPLIP 935


>gi|254518073|ref|ZP_05130129.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226911822|gb|EEH97023.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 153

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++ +N G +AR     N T L L+ P  G+  +  +   A  D        +S 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTNST-LHLIKPM-GFKIDDKQVKRAGLD-------YWSE 55

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LK    ++H  Y    +   + +  LA     +  +E  F   +  I+FGRE  G+  EE
Sbjct: 56  LK---LEMHESYEEFMKKYGDKRIFLATTHGGVHYDEVSFKEGDF-IMFGRESSGVP-EE 110

Query: 137 IALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169
           +  S+  I  P +     SLN+S  V ++ +E +
Sbjct: 111 VHNSHEGIRVPMIKTSTRSLNLSNTVAIVAYEAL 144


>gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
 gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
          Length = 261

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 30/179 (16%)

Query: 1   MTPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           +  Y  + + S+K  + +  + DP    N G + R    F +  +  +N  D + S+  R
Sbjct: 105 IVNYIEEKKISSKNIICLENVSDPG---NFGTIIRTANAFGINDILTINCVDKYNSKVLR 161

Query: 59  SSSANA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           ++          DC I+ +      KE  +  + + +TT    + F            L 
Sbjct: 162 ATMGAIFRTNIIDCKIEKI------KELQSGGYRLISTTLSKNSKF------------LE 203

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  F G+N+ ++ G E  G++ E + +SN  +   ++    SLN+S A  +++++  +N
Sbjct: 204 EFTFDGKNI-VVMGNEANGISAEMLKISNNHLKIDMDNSMESLNVSIAAAIIMYKIFKN 261


>gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 299

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 239 VFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLY 281


>gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
 gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
          Length = 288

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEE 136
           K+AIA+L  +   TA         LA  + ++ +++  +   + + +I G E  GL NE 
Sbjct: 200 KQAIAELKKLGYKTA--------ALALTDDSVSIDDSELMKEEKLAVILGNEGEGLENET 251

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           IAL +  +  P+     SLN++ A  +  W+
Sbjct: 252 IALCDYTVKIPMTHGVDSLNVAAASAVAFWQ 282


>gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 275

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           V  IFG E WGL  E +AL++  +S P+     SLN++ A  + ++
Sbjct: 215 VAWIFGNEAWGLPQETLALADETVSVPIYGRAESLNLATAAAVCLY 260


>gi|323704896|ref|ZP_08116473.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535822|gb|EGB25596.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 156

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 16/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++ +N G +AR       ++L LV P     SEK    S         ++V+ N
Sbjct: 5   VVLVEPEIPQNTGNIARTC-VLTGSKLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKVYEN 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
           L+E      F+ +T        K  LA  +     +E  +  ++  I+FG+E  GL    
Sbjct: 64  LEE------FLESTKG-----CKYYLATTKGKHFYHEVKYEDESY-ILFGKESAGLPQWL 111

Query: 136 EIALSNAIISFPVNPLFP--SLNISQAVLLMVWECME 170
                +  I  P+N +    SLN+S +V ++V+E ++
Sbjct: 112 REKYEDDCIRIPMNEVKAERSLNLSNSVAIVVYEALK 148


>gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
 gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
          Length = 243

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 31/170 (18%)

Query: 8   LQNSAKGPVIIL---VDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSS 60
           L+N   GP+++L    DPQ   NIG + R    F+    + Q R   P  G     A+++
Sbjct: 90  LENGETGPLLVLDQITDPQ---NIGALFRLAAAFSAKAVIAQDRRTPPLGG---PLAKAA 143

Query: 61  SANADCV--IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +   +CV  I  V +   L EAI + H  I+        + +     +  A+VL      
Sbjct: 144 TGAVECVPFIPVVNISRAL-EAIREKHIPIFGLAGEGALSLRDTAPTRTCALVL------ 196

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                   G E  GL     A+ + +++ P++P   SLN++ A  + ++ 
Sbjct: 197 --------GAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYH 238


>gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
 gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
          Length = 178

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+++++D      N+G V R+   F +  + L       P+ +   ++   +
Sbjct: 16  EFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGE 75

Query: 66  CVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQN 120
             +D  + F+  +EA+    AD +F+Y+            +   E +  L       GQ 
Sbjct: 76  DSVDW-KYFATTEEAVNQLKADGYFVYS------------IEQVEGSTKLQRLETGQGQR 122

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             ++FG E  G++   + L +  +  P      SLN+S    +++WE
Sbjct: 123 YAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWE 169


>gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 177

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + ++K P+++++D      N+G V R+   F +  + L       PS +   ++  A+
Sbjct: 16  EFKAASKLPLVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAE 75

Query: 66  CVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              DSV  + F+   +A+ +LH        N     +V     A ++ +     G+   +
Sbjct: 76  ---DSVTWKYFAETSDAVDELH-------ANGTKVFAVEQVANATMLQSLETKGGERYAV 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + G E  G+    +   +  +  P      SLN+S A  ++VWE
Sbjct: 126 VLGNEVKGVQQTVVDRCDGCLEIPQFGTKHSLNVSVAAGIVVWE 169


>gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 281

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G     +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 219 GTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|157737324|ref|YP_001490007.1| RNA methylase [Arcobacter butzleri RM4018]
 gi|157699178|gb|ABV67338.1| RNA methylase, SpoU family [Arcobacter butzleri RM4018]
          Length = 154

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++P++  N+G + R  +  N  +L L+ P       +     A  D   D + VF  
Sbjct: 4   IVLLEPRIPGNVGTIGRLCFALN-CKLHLIKPYGFGEITEKEVRRAGLDYWYD-LEVFE- 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGLTN 134
             E I D        ++N  N +  LA  +   V  +  F   NVG    FGRE  GL  
Sbjct: 61  -YENIEDF------WSKNPFNDRHFLATTKTKNVYFDAKF---NVGDYFYFGREDAGLPE 110

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++  S+  I+ P+     SLNI+ +V ++ +E +  +  S
Sbjct: 111 DLLSKSSHTCITIPMTNDARSLNIANSVSIVAYEALRQNFTS 152


>gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 223

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           V ++ G E+WG++ E  AL++  I  P+  +  SLN+S A  ++++E 
Sbjct: 114 VAVLLGAEKWGVSPEAAALADRHIVIPMMGMVQSLNVSVAAAVILFEA 161


>gi|299068084|emb|CBJ39298.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           CMR15]
          Length = 156

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  +   ++A T R    F  +   P +                 +FG E  
Sbjct: 62  SWEAFLRDAQPNPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  A    +  I  P+ P   SLN+S  V ++V+E 
Sbjct: 107 GLSEERRAGFPPSQRIRLPMRPNNRSLNLSNTVAVVVFEA 146


>gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 308

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 248 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 290


>gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
           2032]
 gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
           2032]
          Length = 157

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 31/163 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-------VID 69
           I+LV+P++  N G +AR +     T L LV+P  G+  +      A  D          D
Sbjct: 11  IVLVEPEIPPNTGSIAR-LCGATDTVLDLVHPL-GFQIDDKHLKRAGLDYWPHVRINHWD 68

Query: 70  SVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           S+  F  L++A    LHF+   T R+           EA     +R        +IFG+E
Sbjct: 69  SLDAF--LQQADERHLHFLTTKTKRSYT---------EARFCPGDR--------LIFGKE 109

Query: 129 RWGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECM 169
             GL  E + L S+  ++ P+ NP   SLN++ A  ++++E +
Sbjct: 110 TKGLPEEILTLYSDRCLTIPMTNPHIRSLNLAMAAGIVLYEAL 152


>gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
 gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
          Length = 186

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + S K P+I+++D      N+G V R+   F +  + L       P+ +   ++  A+
Sbjct: 16  EFKQSRKMPLIVVLDDVRSLHNVGSVFRSSDAFRVEAIYLCGITATPPNAEIHKTALGAE 75

Query: 66  CVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +D  + F   +EAI  L    +++Y+      +     L+ + A I   +   S +  
Sbjct: 76  DSVDW-QYFPTTEEAIEQLKANGYYVYSVEQVEGSTKLQTLSQQVAPITSEQT--SEKRY 132

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            ++ G E  G+    + LS+  +  P      SLN+S    +++WE
Sbjct: 133 AVVLGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIWE 178


>gi|295095239|emb|CBK84329.1| rRNA methylases [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 15/120 (12%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP  + R   S++A ++  + SV+    + EA++ L          +     VLA   +A
Sbjct: 52  WPGARMRTMASTAAGSNSWV-SVKTHQTIGEAVSHL----------KGRGMQVLATNLSA 100

Query: 109 IVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             ++ R I   +   I+ G+E+ G+T E + L++  I  P+  +  SLN+S A  L+++E
Sbjct: 101 KAVDFREIDYTRPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 283

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           + L P+  ++ L +    G+ V ++ G E  GLT E I  ++  +  P++P   SLN+
Sbjct: 214 AALTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAADVAVRIPMSPGVDSLNV 271


>gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357]
          Length = 229

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMTGMVQSLNVSVASALILYE 160


>gi|152993289|ref|YP_001359010.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425150|dbj|BAF72653.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 164

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVI-DS 70
           I+LV+PQ+ +N G + R   N   T L L+ P      +KA   +      + D V+ +S
Sbjct: 4   IVLVEPQIPQNTGTIGRLCVNLGAT-LHLIKPLGFDIDDKAVKRAGLDYWKHLDLVVWES 62

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              F  LKE   D H   +TT  +   F +     +                I+FG E  
Sbjct: 63  FEAF--LKEHPIDEHSYMSTTKTDNLYFNAPFKKGDY---------------ILFGSETK 105

Query: 131 GLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           G+ +E++ L++    I+ P+     SLN+  +V +++++ +  +    EK
Sbjct: 106 GI-DEKVLLAHPEQCITIPMGGKGRSLNLGVSVGVVIYDALRQNYEGFEK 154


>gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 206

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 13/120 (10%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP  + R   S++A ++  +  V+    + +A+A L        R      + L+ K  A
Sbjct: 29  WPGSRMRTMASAAAGSNSWV-QVKTHRTIGDAVAHL------KGRGMQILATHLSDK--A 79

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 80  VDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEA 138


>gi|310658411|ref|YP_003936132.1| rRNA methylase [Clostridium sticklandii DSM 519]
 gi|308825189|emb|CBH21227.1| putative rRNA methylase [Clostridium sticklandii]
          Length = 151

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 22/158 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSN 76
           +LV+P++ +N G + R     N  +L L+ P  G+  ++ +   A  D + + S+  + +
Sbjct: 1   MLVEPEIPQNTGNIIRTCACIN-ARLHLIKPM-GFSMDEKQLKRAGLDYMDLVSINYYDS 58

Query: 77  LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +E I   D++  Y  T + + N        E+ IV              FG+E  GL+ 
Sbjct: 59  FEELIEDKDINKFYFFTTKAKKNHTEATYEDESYIV--------------FGKETKGLSQ 104

Query: 135 EEIALS-NAIISFPVNPL--FPSLNISQAVLLMVWECM 169
           E ++L+ N  +  P+  +    SLN+S +V +  +E +
Sbjct: 105 EILSLNPNNNVRIPMLNMDRVRSLNLSNSVAIAAYEAI 142


>gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 282

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 222 VFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLY 264


>gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 230

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 22/147 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82
            N+  V R      + Q+  +     WP+ + +   SS+A ++  +  V+    +++A+ 
Sbjct: 31  HNVSAVIRTADAVGVHQVHAI-----WPTSRMKTLVSSAAGSNSWV-QVKTHRTIRDAVG 84

Query: 83  DLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            L          +     VLA    E A+   E  ++ +   I+ G+E+ G+T+E + L+
Sbjct: 85  HL----------KAEGMQVLATNLSEHAVDFREIDYT-RPTCILLGQEKTGITDEALKLA 133

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWE 167
           +  I  P+  +  SLN+S A  L+++E
Sbjct: 134 DRDIIIPMTGMVQSLNVSVASALILYE 160


>gi|49475913|ref|YP_033954.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238721|emb|CAF27975.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 158

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 11/153 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R    F L  + ++ P  G+         A  D +      +++
Sbjct: 5   IALFQPDIAGNTGTILRLSACFGL-HVHIIEP-AGFNLSDRNLKRAGMDYL-----EYAS 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  I   HFI+     NR   + +L   +A     +  +   +V ++FGRE  G+ N  
Sbjct: 58  LERHIDWPHFIHTMKQFNR---RLLLLSTKAETCYTQICYQENDV-LLFGRESAGVPNYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               N  +  P+ P   SLN++ +V +   E +
Sbjct: 114 YEAVNETLKIPMQPYARSLNLAMSVAITTGEAL 146


>gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 282

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 222 VFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLY 264


>gi|94309202|ref|YP_582412.1| RNA methyltransferase TrmH, group 2 [Cupriavidus metallidurans
           CH34]
 gi|93353054|gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34]
          Length = 156

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL LV P  G+P E AR   A  D     ++RV  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAGLDYHEYATMRVHE 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T      F  V  AP +                 +FG E  
Sbjct: 62  SWDALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDW---------------FVFGSETR 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL  E  E   S   I  P+ P   SLN+S  V ++V+E 
Sbjct: 107 GLAPERREWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEA 146


>gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
 gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
          Length = 175

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 11/165 (6%)

Query: 5   APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           A + + + K P V++L D +   NIG V R    F +  + L       P  +   ++  
Sbjct: 14  AEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122
           A+  +D  +   N  +A+ +L        R        +   E +I+L+E  +   +   
Sbjct: 74  AEFTVDW-KYVDNAVDAVDNL--------RKAGYMVYSVEQAEGSIMLDELELDKSKKYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G E  G+  E I  S+  I  P      SLN+S    +++W+
Sbjct: 125 IVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWD 169


>gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 248

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 88  YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP 147
           YA      +N     A  +A  V  E  F+ Q +G+I G E  G+    IAL + +I  P
Sbjct: 162 YAIKTLKEHNITIYGAEAQAKDVFWESDFT-QPLGLIVGSEGKGIRQTVIALCDKVIKIP 220

Query: 148 VNPLFPSLNISQAVLLMVWECM 169
           +     SLN+S A  L+ +E +
Sbjct: 221 MRGTINSLNVSVASALITFEVL 242


>gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 223

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +N   + G E+WGL+++ I+  +  I  P++ +  SLN+S A  ++++E +        +
Sbjct: 114 ENTCFVLGAEKWGLSDQLISKVDESIFIPMSGMVQSLNVSVATSILLFEAI--------R 165

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGY 208
             K ++    KGE LS  +Y E +L E  Y
Sbjct: 166 QRKSKSLLPLKGEGLSAEEY-EKTLFEWSY 194


>gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
 gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
          Length = 178

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 11/166 (6%)

Query: 3   PYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P A +     K PV +++D  +  +N+G   R    F + ++ L       P+ +   ++
Sbjct: 12  PSAGEFARMEKMPVAVVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTA 71

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQN 120
             A+  + +   F+   + IA L        R +     V+   E A++L+E R   GQ 
Sbjct: 72  LGAELTV-AWDYFAATTDCIAAL--------RAQGYLIYVVEQVEGAVMLDEFRPRPGQK 122

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             ++FG E  G+  E +  ++  I  P      S+N+S A  +++W
Sbjct: 123 YALVFGNEVDGVAQEVVDAADGAIEIPQAGTKHSVNVSVAGGVVLW 168


>gi|308188674|ref|YP_003932805.1| RNA methylase [Pantoea vagans C9-1]
 gi|308059184|gb|ADO11356.1| putative RNA methylase [Pantoea vagans C9-1]
          Length = 232

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITEEALALADRKIVIPMVGMVQSLNVSVACALILYE 160


>gi|306830150|ref|ZP_07463334.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304427676|gb|EFM30772.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 167

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L +PQ+ +N G +AR     N + L ++ P  G+P +  +   A  D      +  + 
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPIDDRKMKRAGLDYWDKLEIHFYD 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTN 134
           NL + ++ +              +  L  K A  V +E  + SG++   +FGRE  GL  
Sbjct: 63  NLADFLSQM------------KGQVYLISKFAEKVYSEANLASGEDQYFLFGREDKGLPE 110

Query: 135 EEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECM 169
           + +       +  P+N     SLN+S  V ++V+E +
Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEAL 147


>gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
 gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
          Length = 175

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 11/165 (6%)

Query: 5   APQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           A + +   K P V++L D +   NIG V R    F +  + L       P  +   ++  
Sbjct: 14  AEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122
           A+  +D  +  +N  +A+ +L        +N       +   E +I+L+E  +   +   
Sbjct: 74  AEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMLDELELDKTRKYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G E  G+  E I  S+  I  P      SLN+S    +++W+
Sbjct: 125 IVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWD 169


>gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 219

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 36/75 (48%)

Query: 94  NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153
           ++ NFK   A      V    I   Q   I+ G ERWG+++    L +  I  P+  +  
Sbjct: 90  HQQNFKIYAAHLSDRAVDYRTIDYTQPTAILMGAERWGVSDTAAELVDGHIIIPMLGMVQ 149

Query: 154 SLNISQAVLLMVWEC 168
           SLN+S A  ++++E 
Sbjct: 150 SLNVSVAAAVILFEA 164


>gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
 gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
          Length = 229

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           F+G     + G E+WGL++   AL +  +  P+  +  SLN+S A   +++E +     +
Sbjct: 112 FTGP-CAFVLGAEKWGLSDAATALMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAA 170

Query: 176 SEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRP---VEKKKKMLDDL 222
                + +  P    + L F   Y +++   R   RP   + +  ++L+DL
Sbjct: 171 GRVPHQGEGIPPDHYDSLLFEWAYPQVASWCREQGRPYPALREDGEILEDL 221


>gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 256

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           Q   II G+E+ G T E IA+++  I  P+  +  SLN+S A  ++++E
Sbjct: 117 QPTAIILGQEKHGATEEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYE 165


>gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 297

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +R   G     +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 233 DRGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLY 286


>gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
 gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
          Length = 183

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 16/172 (9%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           Q + + K P+I+++D      N+G V R+   F +  + L       P  +   ++   +
Sbjct: 16  QFKEAEKLPLIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTALGGE 75

Query: 66  CVIDSV--RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              DSV  + F N ++A+ +LH    ++Y+     +    + L   E  I  +    + Q
Sbjct: 76  ---DSVEWKYFKNTEDAVNELHKKGYYVYSI---EQVEGSTKLQNLEVDIRQHN---TDQ 126

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +I G E  G+  + + +S+  +  P      SLN+S    +++WE  +N
Sbjct: 127 HYAMIMGNEVKGVKQQVVDMSDGCLEIPQFGTKHSLNVSTTAGIVIWEFAKN 178


>gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
 gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
          Length = 229

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + G E+WGL+ E   L +  I+ P++ +  SLN+S A  ++++E +    V+
Sbjct: 119 LLGAEKWGLSQEAAELVDQSITIPMSGMVQSLNVSVATAILLFEVLRQRQVA 170


>gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
 gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
          Length = 305

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
           +P+   +VL +R F+ Q   ++FG E  GL    +  ++ I+S P+     SLN++ +  
Sbjct: 231 SPRTLPVVLAQRTFAQQPTCVLFGNEARGLETGMLEQADDIVSIPIYGKAESLNLATSAS 290

Query: 163 LMV 165
           +M+
Sbjct: 291 IML 293


>gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 175

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 15/165 (9%)

Query: 7   QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           Q + + K P+++++D  +   N+G V R    F L  + L       P    + ++  A 
Sbjct: 11  QFRAADKTPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCGYTPVPPHRDIQKTALGAT 70

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNERI-FSGQNVG 122
             ++  + F+   EA+A L          +    +V+A ++A  +I+L++ I  S + + 
Sbjct: 71  ETVEW-QYFATTTEAVAAL----------QEAGYTVMAVEQAVNSIMLDQFIPASDKPLA 119

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +IFG E  G+  E + +    I  P + +  SLNIS +  ++VW+
Sbjct: 120 LIFGNEVSGVDAEVMKMVEGCIEIPQSGMKHSLNISVSTGIVVWD 164


>gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 250

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           Q   II G+E+ G T E IA+++  I  P+  +  SLN+S A  ++++E
Sbjct: 111 QPTAIILGQEKHGATEEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYE 159


>gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 229

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP  + R   S++A ++  +  V+    + +A+A L        R      + L+ K  A
Sbjct: 52  WPGSRMRTMASAAAGSNSWV-QVKTHRTIGDAVAHL------KGRGMQILATHLSDK--A 102

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 262

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I+ G E  GL+N  IAL++ ++S P++    SLN++ A  L+++E     I +S
Sbjct: 209 ILLGNEGSGLSNSLIALADELVSIPLSQGVESLNVAIATALLLYEAKRQKIFNS 262


>gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 296

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 18/142 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSN 76
           + DP    N+G + R+   FN   +  +  +   P+E      S++ A  +I  ++V +N
Sbjct: 155 VTDPH---NVGAIMRSAVAFNAGAV--ITTQRHSPTESGVLAKSASGALELIPYIQV-TN 208

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ +LH +          F ++    E    L E  FSG+ V ++ G E  GL  + 
Sbjct: 209 LADALGELHKL---------GFSTIGLDSEGPAAL-EGTFSGEKVALVLGSEGKGLRQKT 258

Query: 137 IALSNAIISFPVNPLFPSLNIS 158
               NA+    +     SLN+S
Sbjct: 259 RETVNALARLDMPGAIKSLNVS 280


>gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 229

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP  + R   S++A ++  +  V+    + +A+A L        R      + L+ K  A
Sbjct: 52  WPGSRMRTMASAAAGSNSWV-QVKTHRTIGDAVAHL------KGRGMQILATHLSDK--A 102

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 309

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G     +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 242 GGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY 290


>gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 229

 Score = 37.4 bits (85), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 13/119 (10%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP  + R   S++A ++  +  V+    + +A+A L       +R      + L+ K  A
Sbjct: 52  WPGSRMRTMASAAAGSNSWV-QVKTHRTIGDAVAHL------KSRGMQILATHLSDK--A 102

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|288932987|ref|YP_003437046.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
 gi|290511781|ref|ZP_06551149.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|288887716|gb|ADC56034.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
 gi|289775571|gb|EFD83571.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 229

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 17/121 (14%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106
           WPS + R   S++A ++  +  V+    + +A+  L          +     +LA    +
Sbjct: 52  WPSSRMRTMASAAAGSNSWV-QVKTHRTIADAVGHL----------KGQGMQILATHLSD 100

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AI   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++
Sbjct: 101 KAIDFREIDYT-RPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILY 159

Query: 167 E 167
           E
Sbjct: 160 E 160


>gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
 gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
          Length = 228

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 46/201 (22%)

Query: 52  WPSEKARS---SSANA---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK 99
           WP EK R+   +SA A         D V D+VR   +       +  +    + N  +F+
Sbjct: 52  WPDEKMRTLSHTSAGARNWVEVETHDTVADAVRTLKS-----QGMQVLATNLSENAVDFR 106

Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            +   K  AI+L              G E+ G+T + +  ++  I  P+  +  SLN+S 
Sbjct: 107 DIDYTKPTAIIL--------------GGEKHGITQDALTEADQDIIIPMVGMVQSLNVSV 152

Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGY--FRPVEKKKK 217
           A  L+++E            + +++  A   E +  +      L ERG+     V KKK+
Sbjct: 153 ASALILFEAQRQ---RQNAGLYDRDVSALPEETIHRI------LFERGHPVLAKVAKKKR 203

Query: 218 M----LDDLYSIFIRPELMRE 234
           +    LDD   I    E  +E
Sbjct: 204 LPYPPLDDQGQIVATEEWWQE 224


>gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708]
 gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708]
          Length = 270

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I+ G E  GL+++  A+++  +  P+NP   SLN++ A  LM++E     I
Sbjct: 215 ILLGNEGAGLSDDLAAMADTQVKIPLNPGVDSLNVAIAAALMLYEAQRQKI 265


>gi|303290747|ref|XP_003064660.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453686|gb|EEH50994.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 447

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV  +   N+G +ARA   F    LRLV PR    +  + S++  A  ++    V+ 
Sbjct: 142 AVVLVGTKKAGNVGAIARACGAFECEDLRLVAPRADPYTRASLSAAKGAQHIVHGAGVYD 201

Query: 76  NLKEAI 81
           ++++A+
Sbjct: 202 DVEDAL 207


>gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
 gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
          Length = 270

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +R   G     +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 206 DRGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLY 259


>gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355]
          Length = 167

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L +PQ+ +N G +AR     N + L ++ P  G+P +  +   A  D      +  + 
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPIDDRKMKRAGLDYWDKLDITYYD 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-IIFGRERWGLTN 134
           +L++ +  +            + +  L  K A  V +E  F+ ++    +FGRE  GL  
Sbjct: 63  SLEDFMEQM------------DGRLYLISKFAEKVYSEENFAAESSHYFMFGREDKGLPE 110

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECM 169
           E +       +  P+N     SLN+S AV ++V+E +
Sbjct: 111 EFMRRYPEKALRIPMNDQHVRSLNVSNAVCMIVYEAL 147


>gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
          Length = 260

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            V ++ G E  GLT+E IA  N+ +  P+     SLN   A  +++W   E S+
Sbjct: 207 GVCVVIGSEGQGLTDETIAACNSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260


>gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
           carboxidivorans P7]
 gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
           carboxidivorans P7]
          Length = 155

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 23/159 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+L  P++ +N G +AR     N  +L L+ P  G+  ++     A  D      ++   
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN-CKLHLIKPL-GFSLDEKHLKRAGLDYWKYLDLEVYE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  L+E   D  F ++TT  + +NF   +  KE                I+FGRE  GL
Sbjct: 63  SYEELREKYKDSTFYFSTT--HGDNFYHEVEFKEGDF-------------IVFGRESCGL 107

Query: 133 TN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +   E      I    +N    SLN+S  V ++ +E +
Sbjct: 108 PDSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEAL 146


>gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 260

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            V ++ G E  GLT+E IA  N+ +  P+     SLN   A  +++W   E S+
Sbjct: 207 GVCVVIGSEGQGLTDETIAACNSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260


>gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 176

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 24/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++P++  N G +AR+    N T+L L+ P     SEK    +A          V+S+
Sbjct: 3   IVLLEPEIPANTGNIARSCVATN-TRLHLIEPLGFRISEKHIKRAAMDYWEKLDYTVYSD 61

Query: 77  L-----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +     K   A  H  +ATT  +    +    P +                I+FG+E  G
Sbjct: 62  INDFYEKNPAAREHMYFATTKAHHTYKEVSFNPDDY---------------IMFGKESAG 106

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECM 169
           +  EEI   N    I  P+     SLN+S +V ++++E +
Sbjct: 107 IP-EEILSENEDGCIRIPMWGDIRSLNLSNSVAIILYEAL 145


>gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 269

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 15/167 (8%)

Query: 11  SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVI 68
           S K P++++ + P+   NIG + R     ++  + + NP+ D +     RSS     CV 
Sbjct: 113 STKKPLLLVAEAPEKPGNIGALLRTADAAHIDAVIIANPKTDLYNPNIIRSS---VGCVF 169

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +V + +     + D  F+ A       N  S  A   A+    E  FS +   I+ G E
Sbjct: 170 -TVPIATGTTAEVID--FLKA------KNISSYCAALTASKPYYEVSFS-EASAIVVGTE 219

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             GLT+E +  S   I  P+  +  S+N+S A  ++++E     +++
Sbjct: 220 DQGLTDEWLTHSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKRQRVMT 266


>gi|152972505|ref|YP_001337651.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897101|ref|YP_002921847.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262045611|ref|ZP_06018630.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996955|ref|ZP_08302652.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
 gi|150957354|gb|ABR79384.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549429|dbj|BAH65780.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259037037|gb|EEW38289.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539245|gb|EGF65274.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
          Length = 229

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 17/121 (14%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106
           WPS + R   S++A ++  +  V+    + +A+  L          +     +LA    +
Sbjct: 52  WPSSRMRTMASAAAGSNSWVQ-VKTHRTIADAVGHL----------KGQGMQILATHLSD 100

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AI   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++
Sbjct: 101 KAIDFREIDYT-RPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILY 159

Query: 167 E 167
           E
Sbjct: 160 E 160


>gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
 gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
          Length = 220

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+  D     N+  + R      +  +  +N  D +P+    S  ++    + S     
Sbjct: 23  TILTEDVHKPHNLSAIIRTCDAVGILDVHCINTTDEFPTFSQVSQGSDKWVFLHS---HP 79

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+K  I  L          R NF    A      +    I   Q   I+ G E+WG++ E
Sbjct: 80  NIKTGINHL---------KRQNFNIYAAHFTDQSLDYREIDYTQPTAILLGAEKWGVSEE 130

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              L +  I  P+  +  SLN+S A  ++++E 
Sbjct: 131 AANLVDGHIIVPMLGMVQSLNVSVAAAVILFEA 163


>gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
 gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
          Length = 231

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  + R      + Q+  V     WP+ + R+  ++A    + V V ++        H
Sbjct: 31  HNVSAIIRTADAVGVHQVHAV-----WPTTRMRTLVSSAAGSNNWVNVKTH--------H 77

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAII 144
            I  T    +     VLA   ++  ++ R +   +   ++ G+E+ G+T+E +AL++  I
Sbjct: 78  TISDTVNHLKTQGMQVLATHLSSRAVDFREVDYTRPTCVLLGQEKTGMTDEALALADQDI 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWEC 168
             P+  +  SLN+S A  L+++E 
Sbjct: 138 IIPMIGMVQSLNVSVASALILYEA 161


>gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae]
          Length = 225

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 31/49 (63%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           Q   II G+ER G++ + +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 98  QPTCIILGQERTGISKQALALADHNIHIPMMGMVQSLNVSVASALILYE 146


>gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
 gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
          Length = 159

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 23/159 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+L  P++ +N G +AR     N  +L L+ P  G+  ++     A  D      ++   
Sbjct: 9   IVLFQPEIPQNTGNIARTCVLTN-CKLHLIKPL-GFSLDEKHLKRAGLDYWKYLDLEVYE 66

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  L+E   D  F ++TT  + +NF   +  KE                I+FGRE  GL
Sbjct: 67  SYEELREKYKDSTFYFSTT--HGDNFYHEVEFKEGDF-------------IVFGRESCGL 111

Query: 133 TN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +   E      I    +N    SLN+S  V ++ +E +
Sbjct: 112 PDSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEAL 150


>gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
 gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
          Length = 229

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 17/149 (11%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106
           WP EK R   S +A ++  ++ V     + +A+             R     VLA    +
Sbjct: 41  WPEEKMRMLVSPAAGSNSWVN-VETHPTITDAVGAF----------RTQGMQVLATHLSD 89

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            A+   E  ++ +   II G+E+ G++ + IAL++  I  P+  +  SLN+S A  L+++
Sbjct: 90  KAVDFREIDYT-RPTCIIMGQEKTGISQDAIALADQDIIVPMMGMVQSLNVSVASALILY 148

Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E       +   N  E      + ++L F
Sbjct: 149 EAQRQRQAAGMYNRTESTLTEEEQQILLF 177


>gi|313148723|ref|ZP_07810916.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137490|gb|EFR54850.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 612

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM------VWECMENSIVSSEKNVKEQN 184
           GL +EE A S  +++ P +P F       A  +M      V+ C  NS+VS E   K +N
Sbjct: 536 GLPHEEFAFSKNMLN-PASPHFGFFTFPNAFGMMTPENEVVFNCESNSVVSDEGEHKGEN 594

Query: 185 TPATKGELLSFLD 197
            P  K  L    D
Sbjct: 595 LPKAKAYLQKLYD 607


>gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 296

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 243 VFGNEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLY 285


>gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 176

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%)

Query: 7   QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+ +++D  +   NIG V R    F +  + L       P  +   ++  A+
Sbjct: 17  EFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 76

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124
             +D  +  +N  EA+ +L        +N       +   E +I+LNE      +   I+
Sbjct: 77  FTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKSRKYAIV 127

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G E  G+  E I  S+  I  P      SLN+S    +++W+
Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWD 170


>gi|255010916|ref|ZP_05283042.1| putative sulfatase [Bacteroides fragilis 3_1_12]
          Length = 586

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM------VWECMENSIVSSEKNVKEQN 184
           GL +EE A S  +++ P +P F       A  +M      V+ C  NS+VS E   K +N
Sbjct: 510 GLPHEEFAFSKNMLN-PASPHFGFFTFPNAFGMMTPENEVVFNCESNSVVSDEGEHKGEN 568

Query: 185 TPATKGELLSFLD 197
            P  K  L    D
Sbjct: 569 LPKAKAYLQKLYD 581


>gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
          Length = 242

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 21/162 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   Q   N+G + R+   F   Q+ +        ++KA  S+  A   +D VR   
Sbjct: 98  VLILDGVQDPGNLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVR--D 155

Query: 76  NLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +L   I +L      + AT+  N ++   + +  + A V+              G E  G
Sbjct: 156 DLHHVIPELQKLGVRVIATSLHNASSIDDIKSTDKMAFVM--------------GNEGNG 201

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + +E IA+S+A +  P++ +  SLN+  A  ++++   E S+
Sbjct: 202 VRDETIAMSDASLYIPIDTM-ESLNVGVAAGIVMYTFKEVSL 242


>gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
 gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
          Length = 234

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            IIFG E+ G+T E +A+++  I  P+  +  SLN+S A  L+++E 
Sbjct: 115 AIIFGGEKNGITAEALAMADQDIIIPMVGMVQSLNVSVASALILYEA 161


>gi|206577394|ref|YP_002235981.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
 gi|206566452|gb|ACI08228.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
          Length = 229

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 17/121 (14%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--E 106
           WPS + R   S++A ++  +  V+    + +A+  L          +     +LA    +
Sbjct: 52  WPSSRMRTMASAAAGSNSWV-QVKTHRTIADAVGHL----------KGQGMQILATHLSD 100

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AI   E  ++ +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++
Sbjct: 101 KAIDFREIDYT-RPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILY 159

Query: 167 E 167
           E
Sbjct: 160 E 160


>gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 247

 Score = 37.0 bits (84), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 26/152 (17%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SN 76
           + DP+   NIG + R+  +F++  L +V  R  +PS+      A + C ++ + +F  SN
Sbjct: 105 VTDPR---NIGSLIRSASSFHIDGL-IVKERQ-FPSDSKLMYKAASGC-MEHINIFEVSN 158

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +   + +L     ++Y   AR   +F  +              + G+NV ++FG E +G+
Sbjct: 159 INSTLKNLREKNFWVYGFDARGEKDFTEIK-------------WEGKNV-LLFGSEGFGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
                  ++  +   +N    SLNIS +  ++
Sbjct: 205 REHTGKYTDFFVKIDINKDVESLNISNSAAIV 236


>gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
 gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
          Length = 259

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 25/166 (15%)

Query: 11  SAKGPVIILV-----DPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANA 64
           +A GP  ++V     DP    N+G + RA     +T + +     D +  +  RS+  + 
Sbjct: 105 AAPGPAFLMVLENIQDPG---NLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSV 161

Query: 65  DCV--IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             V  + +  + ++LK   A    +YA     RNN++     KE   V         + G
Sbjct: 162 FRVPFVYTEDLPASLKALKAGGVRLYAAHLNGRNNYE-----KEDYTV---------DTG 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            + G E  GLT+E  AL++A +  P+     SLN + A  ++++E 
Sbjct: 208 FLVGNEANGLTDETAALADACVKIPMKGKVESLNAAVAASVLMFEA 253


>gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 247

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 26/152 (17%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SN 76
           + DP+   NIG + R+  +F +  L +V  R  +PS+      + + C ++ + +F  SN
Sbjct: 105 VTDPR---NIGSLIRSAASFKIDGL-IVKERH-FPSDSKLMYKSASGC-MEHLNIFKVSN 158

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +   + +L     ++Y   AR   NF  V              + G+NV ++FG E +G+
Sbjct: 159 INSTLKNLREKNFWVYGFDARGEKNFTDVK-------------WEGKNV-LLFGSEGFGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
                  ++  +   +N    SLNIS +  ++
Sbjct: 205 KEHTGKYADFFVKIDINKDIESLNISNSAAIV 236


>gi|167945591|ref|ZP_02532665.1| RNA methyltransferase, TrmH family, group 1 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 92

 Score = 37.0 bits (84), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 163 LMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDL 222
           L+ +E    S+  ++K ++     A+   L  F  +L  +LE+ G+  P  +  K+L  L
Sbjct: 2   LLAYEVYLASLEEADKPLRAPREVASAEMLEGFHTHLAQALEDIGFADP-RQSDKLLRRL 60

Query: 223 YSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
            ++F R    R+E+ +LRGI+S      R+S RR
Sbjct: 61  RALFHRARPDRDEINILRGILSAAQ--GRKSMRR 92


>gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 178

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 7   QLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+++++D      NIG V R    F +  + L       P  +   ++  A+
Sbjct: 19  EFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTALGAE 78

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGI 123
             +D  +   N  EA+ +L        RN       +   E +I+LNE     +G+   I
Sbjct: 79  FTVDW-KYVDNAVEAVDNL--------RNGGYTVYSVEQAEGSIMLNELTLDRTGK-YAI 128

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + G E  G+  E I  S+  I  P      SLN+S    +++W+
Sbjct: 129 VMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWD 172


>gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 248

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDS 70
           AK P++IL       N+G +AR M  F L +L + + P    PS+ A   +      +D 
Sbjct: 96  AKEPLVILDGIGNPHNLGAIARTMAFFGLGRLIVSDHPEQALPSDAAFRIAEGGLEWVDV 155

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRE 128
            +V +NL +A+  L   Y          +S+           +  FS  +  + ++ G E
Sbjct: 156 YQV-ANLGKALPRLKPHYQVIGTALGAHRSM-----------KDTFSSNDKPLALVLGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
             GL    +A  + I++ P +    SLN+S    +++
Sbjct: 204 EEGLPATTLAACDDIVTIPGSGRVQSLNVSATAAILI 240


>gi|307108600|gb|EFN56840.1| hypothetical protein CHLNCDRAFT_144422 [Chlorella variabilis]
          Length = 365

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P+   NIG V RA  NF    + +V+ R      +   +S N+  V+ S+R+   
Sbjct: 26  VVLVSPKTPANIGAVLRAAENFEAHDVVVVDARCDARCGEVEVTSCNSH-VMHSMRLVPT 84

Query: 77  LKEAIADLHFIYATTARN 94
           L +A+AD       T R+
Sbjct: 85  LADALADCSGSIGFTRRS 102


>gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
           15470]
 gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
           15470]
          Length = 170

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRVF 74
           I+LV+P++  N G +AR     +LT L LV P  G+  +      A  D   ++D V V 
Sbjct: 3   IVLVEPEIPGNTGNIARLCAAEHLT-LHLVEPL-GFQIDDKHLKRAGLDYWDLLD-VHVH 59

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N    +  L  H  Y  T +   ++  +              + G +V ++FG+E  GL
Sbjct: 60  PNYDSVVRMLAGHHFYLNTTKAIRSYTDI-------------SYDGDDV-LVFGKETKGL 105

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E + +     I  P+     SLN+S AV ++  E M
Sbjct: 106 PEELLRSHKEDCIRIPMIEEARSLNLSNAVAIVAMEAM 143


>gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
 gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
          Length = 229

 Score = 37.0 bits (84), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           F+G     + G E+WGLT+    L +  +  P+  +  SLN+S A   +++E +      
Sbjct: 112 FTGPTA-FVLGAEKWGLTDRARDLMDEALFIPMRGMVQSLNVSVATATLLFEAL------ 164

Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLE 204
             +  +   T  ++GE LS   Y ++  E
Sbjct: 165 --RQRQAAGTAPSQGEGLSADHYTKLLFE 191


>gi|297518058|ref|ZP_06936444.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50]
          Length = 174

 Score = 37.0 bits (84), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 61  ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 106


>gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
 gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
          Length = 176

 Score = 37.0 bits (84), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%)

Query: 7   QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+ +++D  +   NIG V R    F +  + L       P  +   ++  A+
Sbjct: 17  EFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAE 76

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124
             +D  +  +N  EA+ +L        +N       +   E +I+LNE      +   I+
Sbjct: 77  FTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKSRKYTIV 127

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G E  G+  E I  S+  I  P      SLN+S    +++W+
Sbjct: 128 MGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWD 170


>gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 276

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 97  NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
            F ++    + A+ L         V  +FG E  GL+ E  A + A ++ P+     SLN
Sbjct: 201 GFTTLATAMDGALTLGVDALPDGPVAWLFGNEAHGLSEEITASAGASVAIPIKGEAESLN 260

Query: 157 ISQAVLLMVWE 167
           ++ A  + +WE
Sbjct: 261 LATAAAMCLWE 271


>gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 296

 Score = 36.6 bits (83), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 18/142 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSN 76
           + DP    N+G + R+   FN   +  +  +   P+E      S++ A  +I  ++V +N
Sbjct: 155 VTDPH---NVGAIMRSAVAFNAGAV--ITTQRHSPTESGVLAKSASGALELIPYIQV-TN 208

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ +LH +          F ++    E    L E  FSG+ V ++ G E  GL  + 
Sbjct: 209 LADALGELHKL---------GFSTIGLDSEGPAPL-EGTFSGEKVALVLGSEGKGLRQKT 258

Query: 137 IALSNAIISFPVNPLFPSLNIS 158
               NA+    +     SLN+S
Sbjct: 259 RETVNALARLDMPGAIKSLNVS 280


>gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
 gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
          Length = 232

 Score = 36.6 bits (83), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 31/46 (67%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL+++ I  P+  +  SLN+S A  L+++E 
Sbjct: 116 ILLGQEKTGITPEALALADSDIIIPMIGMVQSLNVSVASALILYEA 161


>gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 274

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 23/173 (13%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSS 60
           T   PQ   +  G V+IL   Q   N+G + R       TQ + L      W S K   +
Sbjct: 115 TLTTPQSIATLDGDVVILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLW-STKVLRA 173

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF----KSVLAPKEAAIVLNERIF 116
              A  ++D    +SN +   A    + A TA    +     K +L P            
Sbjct: 174 GMGAHKLLDLYEGWSNQQVLSAITAPLLAATADAEQDLYSLKKDLLHP------------ 221

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               V  + G E  G++ + +A +  + S P++P   SLN+S A  + ++E +
Sbjct: 222 ----VAWVMGSEGQGISEDLLAQAKGV-SIPIDPRVESLNVSTAAAICLFETL 269


>gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38]
 gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38]
          Length = 220

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 20/162 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+N  K   I + D     N   V R+   F + +L +V  + G   +K    +  A+  
Sbjct: 28  LKNRTKHFTIAMEDVFQLHNTSAVMRSCEVFGIQELNVVEQKFGKSIDK--EIAMGAEKW 85

Query: 68  IDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +D  R FS++++ I +L    + I ATT            P   + +L+E   + Q   +
Sbjct: 86  VDINR-FSSIQDCITNLKQKGYQIIATT------------PHNDSCLLHEFDIT-QPSAL 131

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            FG ER GL+ E +  ++  +  P+     SLNIS +  +++
Sbjct: 132 FFGTERDGLSEEVMQQADGFLKIPMVGYTESLNISVSAAIII 173


>gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905]
 gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82]
 gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74]
 gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671]
 gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           4343-70]
 gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218]
 gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227]
          Length = 206

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 93  ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 138


>gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431]
 gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327]
          Length = 206

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 93  ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 138


>gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 269

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 13/148 (8%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           P+   NIG + R     N+  + + NP+ D +     R+S     CV        +  E 
Sbjct: 125 PEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPNIIRAS---VGCVFTVPIAVGSTTEV 181

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I  L          + +F    A   A+    E  F+ +N  I+ G E  GLT E +  S
Sbjct: 182 IDYLK---------KKDFNIYCAALSASKPYYEVPFAEKNTAIVVGTEDEGLTQEWLKNS 232

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
              I  P+  +  S+N+S A  ++++E 
Sbjct: 233 TQNIIIPMEGVIDSMNVSVAAAVLIFEA 260


>gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           155-74]
          Length = 206

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 93  ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 138


>gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 235

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +G+I G E  G+    + LSN I+S P     PSLN+S A  + +W
Sbjct: 186 LGLILGSEGKGIEKNLLKLSNEIVSIPTVGKTPSLNVSVAAGIAIW 231


>gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1]
 gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3]
          Length = 218

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 105 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 150


>gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
 gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
          Length = 218

 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 105 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 150


>gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3]
 gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1]
 gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3]
 gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2]
          Length = 218

 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 105 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEA 150


>gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 179

 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%)

Query: 8   LQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
            + + K P+II++D      N+G V R    F + ++ L       P    + ++  A  
Sbjct: 19  FKEAEKTPLIIVLDNIRSLNNVGSVFRTADAFLVEKVYLCGITATPPHRDIQKTALGATD 78

Query: 65  ----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQ 119
               + V DSV +   LKE    L                 +   E A++L++     G+
Sbjct: 79  AVAWEYVEDSVALSQRLKEQGVKL---------------CAIEQAEDAVMLDKFTPVKGE 123

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              ++FG E  G+  E ++LS+ ++  P      SLNIS +  +++W+
Sbjct: 124 RYAVVFGNEVKGVQQEIVSLSDTVLEIPQVGTKHSLNISVSAGVVIWD 171


>gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 176

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 23/163 (14%)

Query: 13  KGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD------ 65
           K P I+++D  +   N+G V R    F L ++ L       P  +   ++  A+      
Sbjct: 23  KVPFIVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAEESVDWE 82

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGII 124
            + D+V +   LKE   + + +++            +   E + +LNE  +   Q + I+
Sbjct: 83  YIEDTVHIVDRLKE---EGYTVFS------------IEQAEGSTMLNELELQKNQKIAIV 127

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G E  G+  E I  SN  I  P      S+N+S    +++W+
Sbjct: 128 MGNEVKGVQQEVINHSNGCIEIPQYGTKHSMNVSVTTGIVIWD 170


>gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
 gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
          Length = 300

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+L       N+G +AR+  +     + + N R  + +     SSA A   I   +V +
Sbjct: 110 IIVLDHITDAGNLGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQV-A 168

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL++A+A L        +N   + +  + K    + +  +    NV ++ G E  GL   
Sbjct: 169 NLQQALARL--------KNEGYWVAGASEKAEGGIWDANLTG--NVCLVMGNENTGLARL 218

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                +  +S P   +  SLN++Q+  + ++E
Sbjct: 219 TQEACDFFVSLPQRGVVSSLNVAQSATVCMYE 250


>gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 246

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 28/173 (16%)

Query: 6   PQLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  + K P I+++D      N G +AR      +  +  V P  G       S + NA
Sbjct: 87  PFLYENGKDPFILVLDGITDVRNFGAIARTCEVAGVNAI--VIPAKG-------SVTVNA 137

Query: 65  DCVIDSVRVF--------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           D V  S             NL  AI  L        RN +  K V A +  A +  E  +
Sbjct: 138 DAVKTSAGALLKIPVCKEPNLTSAIQFL--------RN-SGIKVVAASERGADIYTEIDY 188

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +G  +  + G E  G+ NE + +++ ++  P      SLN+S A  ++++E +
Sbjct: 189 TGP-IAFVMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVI 240


>gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W]
 gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
 gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
          Length = 210

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G E+WG++ E   L++A I  P+  +  SLN+S A  ++++E 
Sbjct: 129 ILLGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAVILFEA 174


>gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
 gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|189220282|ref|YP_001940922.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
           [Methylacidiphilum infernorum V4]
 gi|189187140|gb|ACD84325.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
           [Methylacidiphilum infernorum V4]
          Length = 161

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 25/172 (14%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +G  ++LV PQ+ +N G +AR +     ++L LV P  G+  E A    A  D     VR
Sbjct: 8   QGLGVVLVAPQIPQNTGNIAR-ICAATFSELHLVKPL-GFSLEDAALRRAGLD-YWKEVR 64

Query: 73  VF-----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +F      +   A      ++  T      F +  AP +                ++FGR
Sbjct: 65  LFLWEGWDHFTAANPRKRLLFFETGTYPPYFTASFAPGDM---------------LVFGR 109

Query: 128 ERWGLTNEEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  GL+   ++ S + I S P+ N    SLN++  V ++++E +   ++  +
Sbjct: 110 ETKGLSQRILSFSPHFIYSIPILNGKVRSLNLANCVSIVLYEALRQILLGKK 161


>gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073]
 gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89]
 gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1]
 gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88]
 gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a]
 gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B]
 gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736]
 gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
 gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073]
 gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89]
 gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1]
 gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a]
 gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82]
 gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034]
 gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU
           83972]
 gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146]
 gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263]
 gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
 gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86]
 gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
 gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989]
 gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989]
 gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
          Length = 229

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
 gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
          Length = 243

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 16/154 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           V+ L + Q   N+G + RA  +FN  T +  VN    + ++K   SS  A   ++ V   
Sbjct: 98  VVFLDNVQDPGNVGTIIRAAKSFNFDTVVSNVN----FYNDKIVRSSQGALFTVNLVNY- 152

Query: 75  SNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                A  +LH +       +N FK    +  + ++ +N+  F  + + IIFG E  G +
Sbjct: 153 -----AYDNLHSVLK--KYKQNGFKIYCTSLSKNSVPINKISFENEKIVIIFGNEGSGAS 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              I +++ ++  P++  F SLN++    ++++E
Sbjct: 206 ETSIKIADKLVYVPID--FESLNVAVCAGIVLYE 237


>gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 92  ARNRNNFKSV-LAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIALSNAIISFPVN 149
           A ++  FK V +A KE AI L+      Q+ + I+FG E  G+ ++ I+ S+ +   P+ 
Sbjct: 190 ALHQAGFKVVSMALKENAIPLSAPELKNQDKLAIVFGTESTGIKDDTISKSDYVTIIPMY 249

Query: 150 PLFPSLNISQAVLLMVWE 167
               SLN++ A  +  WE
Sbjct: 250 NEVDSLNVAAASAVTFWE 267


>gi|289449578|ref|YP_003475415.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184125|gb|ADC90550.1| RNA methyltransferase, TrmH family, group 2 [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 163

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 22/156 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV+P++  N G + R         L LV P  G+  ++ +   A  D     +   + 
Sbjct: 4   IVLVEPEIPYNTGAIGRTCVALG-AALHLVGPM-GFSIDEKQVRRAGLDYWQHLNYTFYE 61

Query: 76  NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           N+ +  A   D+   YATT +  N +  V  P E                I FG+E  GL
Sbjct: 62  NIVDFTAKHPDIKPFYATT-KALNTYAEVSYPSE--------------TWIFFGKESAGL 106

Query: 133 TNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             E  +      I  P+ P   SLN+S +V ++ +E
Sbjct: 107 PEEMLLPFPERCIRIPMYPQIRSLNLSNSVAIIAYE 142


>gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
          Length = 229

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 296

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 18/142 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSN 76
           + DP    N+G + R+   FN   +  +  +   P+E      S++ A  +I  ++V +N
Sbjct: 155 VTDPH---NVGAIMRSAVAFNAGAV--ITTQRHSPTESGVLAKSASGALELIPYIQV-TN 208

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ +LH +          F ++    E    L E  FSG+ V ++ G E  GL  + 
Sbjct: 209 LADALGELHKL---------GFSTIGLDSEGPAPL-EGTFSGEKVALVLGSEGKGLRQKT 258

Query: 137 IALSNAIISFPVNPLFPSLNIS 158
               NA+    +     SLN+S
Sbjct: 259 RETVNALARLDMPGSIKSLNVS 280


>gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. Sakai]
 gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           301]
 gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046]
 gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227]
 gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. W3110]
 gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str.
           8401]
 gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11]
 gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1]
 gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str.
           REL606]
 gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933]
 gi|147866|gb|AAB00161.1| spoU [Escherichia coli]
 gi|290501|gb|AAA62004.1| spoU [Escherichia coli]
 gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301]
 gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T]
 gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046]
 gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227]
 gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401]
 gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli]
 gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli]
 gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli]
 gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli]
 gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli]
 gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1]
 gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017]
 gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC
           796-83]
 gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B]
 gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. G5101]
 gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. 493-89]
 gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. H 2687]
 gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14]
 gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G]
 gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68]
 gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180]
 gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253]
 gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii
           ECD227]
 gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1044]
 gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88]
 gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           2747-71]
 gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6]
 gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272]
 gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304]
          Length = 229

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
 gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
          Length = 229

 Score = 36.2 bits (82), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + Q   N+G + R    F+     L+     + + K  S+S  A      ++V  
Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILKV-E 163

Query: 76  NLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL + +  LH         +NNF S+     K+AA + +  I + Q   IIFG E  G++
Sbjct: 164 NLSQILDKLH---------QNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIFGNESSGIS 214

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                +    I  P+   F SLNI+ A  ++++E
Sbjct: 215 AALEKIIQKQIYIPI--AFESLNIANATAILLYE 246


>gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 176

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 15/164 (9%)

Query: 8   LQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            + ++K P+II++D      NIG V R    F + ++ L       P +    ++  A  
Sbjct: 17  FKEASKSPLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGA-- 74

Query: 67  VIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123
             DSV      N  + I  L     TT          +   E A+ LN+ ++   +   +
Sbjct: 75  -TDSVVWEYVENTMDVIQSLKENKVTTI--------AIEQAENAVFLNDFKVSKDEKYAL 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           IFG E  G+  E ++  + ++  P      SLNIS +  ++VW+
Sbjct: 126 IFGNEVKGVAQEVVSSCDTVVEIPQYGTKHSLNISVSAGVVVWD 169


>gi|319778873|ref|YP_004129786.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108897|gb|ADU91643.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 156

 Score = 36.2 bits (82), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P++  N+G + R   N     L LV P      +K    +        ++++ + 
Sbjct: 4   IVLVSPEMPANVGNIIRLSANTG-CNLHLVRPFLFHLDDKHLKRAGLDYHEHANIKIHNT 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+  +      T RNR    S    K     L++  F   +V  IFGRE  GL + E
Sbjct: 63  LEEALNTI-----GTDRNRCFAISTKGKKH----LSDINFQKGDV-FIFGRESAGLKDYE 112

Query: 137 ---IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              I +  A +  P+     SLNIS AV + V+E
Sbjct: 113 WSIIGIDQA-VRIPMKANSRSLNISNAVAITVYE 145


>gi|146309755|ref|YP_001174829.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
 gi|145316631|gb|ABP58778.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 229

 Score = 36.2 bits (82), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 13/119 (10%)

Query: 52  WPSEKAR---SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
           WP  + R   SS+A ++  + +V+    + EA+A L       A       + L+ K  A
Sbjct: 52  WPGNRLRTMASSAAGSNSWV-TVKTHPTISEAVAQL------KASGMQILATHLSDK--A 102

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +   E  ++ +   I+ G+E+ G+T E + L++  I  P+  +  SLN+S A  L+++E
Sbjct: 103 VDFREIDYT-RPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 177

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 15/165 (9%)

Query: 7   QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P++I++D  +   NIG V R    F + ++ L       P +  + ++  A 
Sbjct: 16  EFKQAEKTPIVIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAKPPHKDIQKTALGA- 74

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNE-RIFSGQNVG 122
              DSV  +  + E +  +  +       ++N    LA ++A  A  LN+ +I   Q   
Sbjct: 75  --TDSV-AWEYVNETLPLIEQL-------KSNSYETLAVEQAENATFLNDFKITQNQKYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +IFG E  G+  + +  S+ ++  P      SLNIS +  ++VW+
Sbjct: 125 LIFGNEVKGVAQDVVTASDVVLEIPQYGTKHSLNISVSAGVVVWD 169


>gi|284931509|gb|ADC31447.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. F]
          Length = 163

 Score = 36.2 bits (82), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 19/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           ++L  PQ   N G +AR+   FN T L L++P  G+     R   A  D     +++ ++
Sbjct: 7   VVLYQPQDPRNAGNIARSCVGFNAT-LHLIHPF-GFFITDERFKRAGLDYWDHLNLKQYA 64

Query: 76  NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +  +      I D  F++   A   NN+ S +  KE  +  ++RI+      ++FG+E  
Sbjct: 65  DFDDFIKQNQIDDNLFLFTKKA---NNYLSNINFKE-YLDHDQRIY------LVFGQETN 114

Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           GL  + +    N ++  P++    S N++ +V+  ++E
Sbjct: 115 GLPEQLLNKYQNNLVKIPMHNAIRSFNLANSVICALYE 152


>gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 256

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + Q   N+G + R    F+     L+     + + K  S+S  A      ++V  
Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILKV-E 163

Query: 76  NLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL + +  LH         +NNF S+     K+AA + +  I + Q   IIFG E  G++
Sbjct: 164 NLSQILDKLH---------QNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIFGNESSGIS 214

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                +    I  P+   F SLNI+ A  ++++E
Sbjct: 215 AALEKIIQKQIYIPI--AFESLNIANATAILLYE 246


>gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16]
 gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16]
          Length = 156

 Score = 36.2 bits (82), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 19/157 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL LV P  G+P E AR   A  D     ++RV  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAGLDYHEYATMRVHE 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +A    D   ++A T R    F  V     A    +  +F  +  G+   R  W 
Sbjct: 62  SWDALMASEQPDPARMFALTTRGSTPFGEV-----AFRPGDWFVFGSETRGLSPERRDWF 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              + I L       P+ P   SLN+S  V ++V+E 
Sbjct: 117 PPAQRIRL-------PMRPDNRSLNLSNTVAVVVFEA 146


>gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
 gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
          Length = 224

 Score = 36.2 bits (82), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 22/157 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +I  + Q G N+  + R      + ++  V PR+G+ S    ++SA+    +D +  +S
Sbjct: 21  TVITEEVQKGRNLSAIIRTCDAVGIPEVHSVVPREGFTSYNGTAASAHK--WVD-IHHYS 77

Query: 76  NLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              E I  L       + A   RN  +F+ +   K  A+++              G E W
Sbjct: 78  TALEPITALTQQGYQIVAAHVDRNAKDFREIDYTKPTALLM--------------GAEIW 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G++     L    I  P+  +  S N+S A   ++ E
Sbjct: 124 GVSEPARELVTHTIHLPMVGMIESYNVSVACAGILLE 160


>gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205]
          Length = 238

 Score = 36.2 bits (82), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           F+G +   + G E+WG++ E +AL +  +  P+  +  SLN+S A   +++E +     +
Sbjct: 119 FTGPSC-FLMGAEKWGMSEEALALVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRQRA 177

Query: 176 SEKNVKEQNTPATKGE 191
            +     +  P  + E
Sbjct: 178 GKVPSNGEGIPGGESE 193


>gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
 gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
          Length = 218

 Score = 36.2 bits (82), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 105 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEA 150


>gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
 gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
          Length = 218

 Score = 36.2 bits (82), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 105 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEA 150


>gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
 gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
          Length = 229

 Score = 36.2 bits (82), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1]
          Length = 218

 Score = 36.2 bits (82), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 105 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYEA 150


>gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 177

 Score = 36.2 bits (82), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 8/152 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL D +   NIG   R    FN+ ++ L       P  +   ++  A   ID      
Sbjct: 27  IIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHREIHKTALGATETIDW----- 81

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              E   D++ + A          S+   +E  ++        Q   ++FG E  G+   
Sbjct: 82  ---EYRQDINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALVFGNEVDGVDQS 138

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            I  SN II  P      SLN+S    +++WE
Sbjct: 139 VIDSSNYIIEIPQFGTKHSLNVSVCAGIVLWE 170


>gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v]
          Length = 229

 Score = 36.2 bits (82), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197]
 gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
 gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197]
 gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
          Length = 229

 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITEEALALADQDIIIPMIGMVQSLNVSVASALILYE 160


>gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39]
 gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39]
          Length = 229

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536]
 gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026]
 gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
 gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026]
 gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042]
 gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
          Length = 229

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|167946047|ref|ZP_02533121.1| rRNA methyltransferase, TrmH family protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 64

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +  +  T+AR R+   +VL P+E    + E    G+ V ++FGRE  GL+NEE+
Sbjct: 10  VGLVIGTSARERSVAWAVLNPRECGGQVIEEAAVGE-VALVFGRENSGLSNEEL 62


>gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 160

 Score = 36.2 bits (82), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 30/167 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I L +P++ +N G +AR    F++T L L+ P  G+  E      A  D      + +  
Sbjct: 3   ISLFEPRIPQNTGSIARTCAAFDIT-LNLIEPL-GFKLEDKYLKRAGLDYWPLVKLKNYS 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+N K++              + N + +   K+  + L +  F   ++ ++FGRE  GL
Sbjct: 61  NFNNFKDS--------------KKNKRIIAFSKKNGVYLKDFRFHEDDI-LLFGREDTGL 105

Query: 133 TNEEIALSNAIIS--FPVNPL-------FPSLNISQAVLLMVWECME 170
            N  I  SN++IS   P   L         SLN+S A  + ++E  +
Sbjct: 106 PNNIINASNSLISIFMPKVALSNNDPKGVRSLNLSVACGIAIYEAYK 152


>gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 231

 Score = 35.8 bits (81), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           F+G +   + G E+WG+++E +A+ +  +  P+  +  SLN+S A   +++E +  
Sbjct: 112 FTGPSC-FLMGAEKWGMSDEALAMVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQ 166


>gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 249

 Score = 35.8 bits (81), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 27/154 (17%)

Query: 13  KGPVIIL---VDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANAD 65
           K P+++L    DP    N+G + R+   F+    +TQ R   P  G     AR++S   +
Sbjct: 99  KRPILVLDQVTDPH---NVGAILRSAAAFDALCIVTQDRHAPPESG---VLARAASGALE 152

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGII 124
            ++  VRV  NL  A+ ++             +  +    EA   + E I  GQ+ V ++
Sbjct: 153 -IVPWVRVV-NLARALDEI---------AEAGYWRIGLDGEADTTIGEAI--GQSRVALV 199

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            G E  GL +  IA  + I   P++P   SLN+S
Sbjct: 200 LGAEGEGLRHNSIAHCDIIAKLPISPRMESLNVS 233


>gi|26417538|gb|AAM75409.1| probable methyltransferase PA3817 [Pseudomonas putida]
          Length = 61

 Score = 35.8 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
          ++LV+     NIG  ARAM N  L++L LV P+  +P  +A + ++ AD V+ + +
Sbjct: 7  VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPK-AFPDAEASARASGADDVLGNAQ 61


>gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 299

 Score = 35.8 bits (81), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G +I+L   ++  NIG + R  +      + LV+      +++ R   A+   V     V
Sbjct: 116 GDIIVLDGVKIVGNIGAIVRTSFALGAAGIVLVDSDLATIADR-RLVRASRGYVFSLPIV 174

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++  +AIA  HF        R     V    E  + ++E   + + + ++ G E+ G +
Sbjct: 175 LASRADAIA--HF-------RRTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGTS 225

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
               ++++  +S P+NP   SLN+S    + ++E
Sbjct: 226 RSFESIASHSVSIPINPAAESLNVSVCAGIALYE 259


>gi|320163521|gb|EFW40420.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2069

 Score = 35.8 bits (81), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 123  IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ GRER G+  + I L +  +  P   +  SLN+  +  LMVWE     IV +
Sbjct: 2012 ILLGRERTGIPVDLIQLLDVCVEIPQFGVVRSLNVHVSAALMVWEYARQHIVPA 2065


>gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
 gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
          Length = 281

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           FG E WGL+ E  A  +  +  P+     SLN++ +  +  WEC  ++
Sbjct: 233 FGSEGWGLSQEARAACDMSVMIPMQRGIDSLNVAASSAVFFWECARSA 280


>gi|223040777|ref|ZP_03611044.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
 gi|255322371|ref|ZP_05363517.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
 gi|222877967|gb|EEF13081.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
 gi|255300744|gb|EET80015.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
          Length = 159

 Score = 35.8 bits (81), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 26/168 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-----ANADCVI-DS 70
           I+LV PQ+ +N G + R   N NL +L ++ P     SEKA   +     A  + VI +S
Sbjct: 4   IVLVHPQIPQNTGSIGRMCVNANL-KLHIIKPTVFDISEKAVRRAGLDYWARLNPVIWES 62

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +  F +      D  F YATT  ++  F       EA     + +F        FG E  
Sbjct: 63  LDEFLHANAQFED-RFFYATTKAHKFYF-------EAEFKKGDFLF--------FGGEST 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           GL  E  E   +NA I  P+     SLN++ +  ++ +E +  +   S
Sbjct: 107 GLPMELMERNFANA-IKIPMGEHGRSLNLATSAGIIAYEAIRQNFAQS 153


>gi|78189163|ref|YP_379501.1| adenine specific DNA methyltransferase [Chlorobium chlorochromatii
           CaD3]
 gi|78171362|gb|ABB28458.1| adenine specific DNA methyltransferase [Chlorobium chlorochromatii
           CaD3]
          Length = 1059

 Score = 35.8 bits (81), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 24/162 (14%)

Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           SVLA       +NE +FS  +VGI+  R+R+ + + ++AL+  I +F         ++ +
Sbjct: 693 SVLASYNQGFAINE-LFSLNSVGIVTARDRFVIDSSKLALTQRIKNF--------FSLDK 743

Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219
             LL ++   ENS  +   +  +Q+T     + +  L Y           RP + +    
Sbjct: 744 DELLRMYGLKENS--AWRIHTIKQSTIRYSADFIQMLAY-----------RPFDNRYVYY 790

Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLL 261
           D L+    R ++M+   FL   IV T+ +  +     ++V L
Sbjct: 791 DPLFIERSRSDVMKH--FLQENIVLTVCRQVKAGESYHHVFL 830


>gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354]
 gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 229

 Score = 35.8 bits (81), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E
Sbjct: 116 ILMGQEKTGITEEALALADRDIIIPMIGMVQSLNVSVASALILYE 160


>gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
 gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
          Length = 241

 Score = 35.8 bits (81), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 26/149 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEAIADL 84
           NI  V R+     + QL  V     WP    R S   A      V+   +  + +AI  L
Sbjct: 32  NIAAVLRSADAVGVHQLHAV-----WPESAMRVSGNTASGSQQWVKTLRHQTVTDAITAL 86

Query: 85  -----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  +    + N  +F+ +   K  AIVL              G E+ G+++E + L
Sbjct: 87  KADGMQVVVTNFSPNAKDFREIDYTKPTAIVL--------------GHEKNGVSDEAVRL 132

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++A +  P+  +  SLN+S A  L+++E 
Sbjct: 133 ADAEVIIPMVGMVQSLNVSVAGALVLFEA 161


>gi|302844295|ref|XP_002953688.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f.
           nagariensis]
 gi|300261097|gb|EFJ45312.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f.
           nagariensis]
          Length = 429

 Score = 35.8 bits (81), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEK-ARSSSANADCVIDSV 71
           G  ++++ P+    +G VARA  +F    LR+V PR + + + + A+S+S  A  ++   
Sbjct: 58  GVTVVIISPRKPVTVGTVARACGSFECEDLRIVMPRQESYITRRHAKSASKGAQYILYRA 117

Query: 72  RVFSNLKEAIADLHFIYATT 91
             + ++ +A AD     A T
Sbjct: 118 AHYDSIAQATADCEVRIAFT 137


>gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
 gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
          Length = 261

 Score = 35.8 bits (81), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I+ G E  GL++  ++L+N I+S P++    SLN++ A  L+++E     I
Sbjct: 209 ILLGNEGSGLSDSLVSLANEIVSIPLSEGIESLNVAIATALILYEAXRQQI 259


>gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           reducens MI-1]
          Length = 152

 Score = 35.8 bits (81), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 22/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           I+LV+P++  N G +AR   +     L LV P  G+ ++      A  D      +   +
Sbjct: 3   IVLVEPEIPANTGNIARTC-SVTGASLHLVEPL-GFSTDDRYLKRAGLDYWHLLDLHYHK 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+ L++   +  F Y TT   R   ++                  +N  ++FG+E  GL
Sbjct: 61  SFAALQQQYPEGRFWYFTTKGGRPYHEASFE---------------ENDFLVFGKETAGL 105

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E +A + +  +  P+     SLN+S +V + V+E +
Sbjct: 106 PKELLAANPDNCLRIPMLGQVRSLNLSNSVAIAVYEAL 143


>gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 229

 Score = 35.8 bits (81), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              + G E+WGL+     L +A I  P+  +  SLN+S A   +++E +    VS 
Sbjct: 116 TAFVLGAEKWGLSEPATRLMDAAIYIPMRGMVQSLNVSVAASALLFEALRQREVSG 171


>gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 269

 Score = 35.8 bits (81), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 19/166 (11%)

Query: 7   QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA 64
           +L+   K P++++ + P+   NIG + R     NL  + + NP+ D +     RSS    
Sbjct: 113 ELKFKNKNPLVLVAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSS---V 169

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            CV  +     N  E IA L           NN     A   A+ V     F   +  I+
Sbjct: 170 GCVFTNPIATGNTTEIIAFLK---------ENNINIFCAALTASKVYTNTSFKTPS-AIV 219

Query: 125 FGRERWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            G E  GL+ E  E A  N II  P+     S+N+S +  ++++E 
Sbjct: 220 VGTEATGLSEEWLENATQNIII--PMEGEIDSMNVSVSAAILIFEA 263


>gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87]
 gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87]
          Length = 268

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 27/170 (15%)

Query: 7   QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA 64
           +L  S   P+I++ + P+   NIG + R     N+  + + NP+ D +     RSS    
Sbjct: 111 KLNFSHNNPLILVAEAPEKPGNIGALLRTADAANVDAVLIANPKTDLYNPNIIRSS---V 167

Query: 65  DCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            CV  +        E I  L      IYA   +    +  +   K +AIV+         
Sbjct: 168 GCVFTNKIAIGTTSEIIKFLQHKNIAIYAAALQASEIYTKIDFTKASAIVV--------- 218

Query: 121 VGIIFGRERWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                G E  GL  E  E A  N II  P+N    S+N+S A  ++++E 
Sbjct: 219 -----GTEATGLNQEWREAATQNIII--PMNGAIDSMNVSVAAGILIFEA 261


>gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424]
 gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG
           19424]
          Length = 156

 Score = 35.4 bits (80), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 25/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G V R   N    QL LV P  G+P + AR   A  D     ++RV  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLDDARMRRAGLDYHEYATMRVHD 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F  V   P +                 +FG E  
Sbjct: 62  SWDALMASEQPDPTRMFALTTRGSTPFGQVAFRPGDW---------------FVFGSETR 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  E       I  P+ P   SLN+S  V ++V+E 
Sbjct: 107 GLSPERREWFPPAQRIRLPMRPDNRSLNLSNTVAVVVFEA 146


>gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
 gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
          Length = 229

 Score = 35.4 bits (80), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
              + G E+WGLT++   L +  +  P+  +  SLN+S A   +++E +    V+     
Sbjct: 116 TAFVLGAEKWGLTDQARDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVAGLAPT 175

Query: 181 KEQN-TPATKGELLSFLDYLEISLEERGYFRP 211
           + +   P    +LL    Y E++   R   RP
Sbjct: 176 QGEGLKPEQYQQLLFEWSYPEVARWCREQERP 207


>gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
          Length = 296

 Score = 35.4 bits (80), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG E WG+  E++ L ++  + P+     SLN++ A  + ++E   N
Sbjct: 246 VFGNEAWGMRTEDLELCDSSAAVPIYGKAESLNLATAASVCIYESARN 293


>gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 248

 Score = 35.4 bits (80), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV++L +P+   N G V R    F  T +      D W     R  +      +      
Sbjct: 108 PVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTVDPWHPTVVRGGAG-----LHFATAV 162

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+ A      ++A      ++ +S   P +A +               FG ER GL+ 
Sbjct: 163 ERLEVADLPAGPLFALDPEG-DDIRSTKLPDDAVLA--------------FGSERTGLSP 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV--WEC 168
           E  A ++ ++S P+ P   S N++ +V + +  W C
Sbjct: 208 ELRARADHLLSLPMRPQVSSYNLATSVAMTLYHWSC 243


>gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
 gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
          Length = 157

 Score = 35.4 bits (80), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 15/154 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P  G+P +  R   A  D        F+N
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPM-GFPWDDKRLRRAGLD-----YHEFAN 56

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
           ++       FI +   +      +   P  +A+      +      ++FG E  GL  E 
Sbjct: 57  IRRHADYAAFIASENPQRLFALTTKGTPAHSAVSYQPGDY------LLFGPETRGLPAEI 110

Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            E   +   I  P+     S+N+S AV ++V+E 
Sbjct: 111 LEALPAQQKIRIPMQAQSRSMNLSNAVAVVVYEA 144


>gi|86153504|ref|ZP_01071708.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612429|ref|YP_001000579.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005510|ref|ZP_02271268.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85843230|gb|EAQ60441.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249452|gb|EAQ72412.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 155

 Score = 35.4 bits (80), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 26/161 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFS 75
           I+LV P++ +N G + R  +N    +L +V P     S+KA R +  +    ++ + ++ 
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPI-IWE 61

Query: 76  NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           NL+E      I    F +ATT       KS  A  +A    N+ +F        FG E +
Sbjct: 62  NLEEFLNENMIYKNRFFFATT-------KSQKAYFDAKFQKNDFLF--------FGSESY 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECM 169
           GL  E + L+  NA I+ P+     SLN++ +V ++ +E +
Sbjct: 107 GLPMELMQLNWENA-ITIPMKSYGRSLNLATSVGIISYEAL 146


>gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
 gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
          Length = 178

 Score = 35.4 bits (80), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 15/170 (8%)

Query: 7   QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + ++S K P+I+++D  +   NIG V R    F + ++ L       P +  + ++  A 
Sbjct: 17  EFKDSPKTPLILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGAT 76

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVG 122
             +D   V + L E + DL          +     V++ ++A   ++ + F+    Q   
Sbjct: 77  QTVDWAYVENTL-EVVKDL----------QQQGVKVMSIEQAEDSISLKDFNPRQNQLYA 125

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+  E +  S+ ++  P      SLNIS    + VW+ M  +
Sbjct: 126 LVLGHEVKGVQQEVVDQSDGVLEIPQLGTKHSLNISVTTGICVWDFMSKT 175


>gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 302

 Score = 35.4 bits (80), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 18/142 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSN 76
           + DP    N+G + R+   F+   +  +  +   P+E      S++ A  +I  +++ +N
Sbjct: 161 VTDPH---NVGAIMRSAVAFDAAAV--ITTQRHSPTESGVLAKSASGALELIPYIQI-TN 214

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ +LH         R  F S+    E    L E  FSG+ V ++ G E  GL  + 
Sbjct: 215 LADALGELH---------RLGFVSIGLDSEGPAPL-EGTFSGEKVALVLGSEGKGLRQKT 264

Query: 137 IALSNAIISFPVNPLFPSLNIS 158
               NA+    +     SLN+S
Sbjct: 265 RETVNALARLDMPGAIKSLNVS 286


>gi|57237733|ref|YP_178981.1| RNA methyltransferase [Campylobacter jejuni RM1221]
 gi|148926586|ref|ZP_01810268.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356389|ref|ZP_03223154.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|57166537|gb|AAW35316.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
 gi|145845280|gb|EDK22374.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345774|gb|EDZ32412.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058344|gb|ADT72673.1| Putative RNA methyltransferase [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 155

 Score = 35.0 bits (79), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 26/161 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFS 75
           I+LV P++ +N G + R  +N    +L +V P     S+KA R +  +    ++ + ++ 
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRAGLDYWDKLEPI-IWE 61

Query: 76  NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           NL+E      I    F +ATT       KS  A  +A    N+ +F        FG E +
Sbjct: 62  NLEEFLNENMIYKNRFFFATT-------KSQKAYFDAEFQKNDFLF--------FGSESY 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECM 169
           GL  E + L+  NA I+ P+     SLN++ +V ++ +E +
Sbjct: 107 GLPMELMQLNWENA-ITIPMKSYGRSLNLATSVGIISYEAL 146


>gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 246

 Score = 35.0 bits (79), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 25/153 (16%)

Query: 13  KGPVIIL---VDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANAD 65
           K PV++L    DP    N+G + R+   F+    +TQ R   P  G     ARS+S   +
Sbjct: 99  KRPVLVLDQVTDPH---NVGAILRSAAAFDALCIVTQDRHAPPESG---VLARSASGALE 152

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++  VRV  NL  A+ ++             +  +    EA   L E I + + V ++ 
Sbjct: 153 -IVPWVRVV-NLARALDEI---------AEAGYWRIGLDGEAEQTLGEAIGTSR-VALVL 200

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           G E  GL +  +A  + +   P++P   SLN+S
Sbjct: 201 GAEGEGLRHNSMAHCDILAKLPISPRMESLNVS 233


Searching..................................................done


Results from round 2




>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 268

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS
Sbjct: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN
Sbjct: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV
Sbjct: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR
Sbjct: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240

Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           GIVSTLDKFSRQSSRRNNVLLQKTEKSE
Sbjct: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268


>gi|315122619|ref|YP_004063108.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496021|gb|ADR52620.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 303

 Score =  348 bits (893), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 202/268 (75%), Positives = 235/268 (87%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M  +  +LQNS K P+I+LVDPQLGENIGMVARAM NFN+TQLRLVNPRDGWP++KARSS
Sbjct: 35  MAVHMQKLQNSTKSPIIVLVDPQLGENIGMVARAMLNFNITQLRLVNPRDGWPNDKARSS 94

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SANAD VIDSVRVFS+LKEAI+DL+F+YATTAR+R+NFKSV APKEAA+VLNERI SGQN
Sbjct: 95  SANADHVIDSVRVFSSLKEAISDLNFVYATTARSRDNFKSVFAPKEAAVVLNERIHSGQN 154

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           VG+IFG ER GLTNEEIALSNAIISFPVNP F SLNI+QAVL+M WE MENS+V  +KNV
Sbjct: 155 VGLIFGCERSGLTNEEIALSNAIISFPVNPNFSSLNIAQAVLVMAWEWMENSVVVPKKNV 214

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           KE + PAT+GELLSFLDY E SL ERGYFRP E+KKKMLDDL S+FIR ELMR+E+FLLR
Sbjct: 215 KESDIPATRGELLSFLDYTENSLAERGYFRPEERKKKMLDDLRSVFIRLELMRQEIFLLR 274

Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           G++STLD+FSR+S R + V+ QK + + 
Sbjct: 275 GVISTLDRFSRESPRGSLVVPQKKQNNH 302


>gi|159184955|ref|NP_354849.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|159140233|gb|AAK87634.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 277

 Score =  330 bits (848), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 185/260 (71%), Gaps = 2/260 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     +L+  A+GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++
Sbjct: 1   MAGTNSELELVAEGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAA 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VID  RVF  L+EAI DL+F+YATTAR R  FK V AP  AA  L  +  +G+ 
Sbjct: 61  ASKADHVIDGTRVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAADTLRTKFKAGEK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +    + +
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLGETL 180

Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
               +  P+TK ++    +++E +L+ RGYF P EKK KM+D+L ++  R     +E+ +
Sbjct: 181 FQPIEQRPSTKEQVFGLFEHIEEALDARGYFHPAEKKPKMVDNLRAVLSRRGFSEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNN 258
            RG++ +LD+F RQ  ++  
Sbjct: 241 FRGVIRSLDRFPRQWPKKTG 260


>gi|86357930|ref|YP_469822.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86282032|gb|ABC91095.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 276

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 135/267 (50%), Positives = 188/267 (70%), Gaps = 2/267 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++
Sbjct: 1   MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VI+  +V+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L  R  +G+ 
Sbjct: 61  ASKADHVIEGTKVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAQTLRTRFRAGEA 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +   E   
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLEAVP 180

Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
            +  +  P+TK +L    D LE +L+ R YF P  KK KM+D+L ++  R     +E+ +
Sbjct: 181 FQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTE 265
           LRG++S+LD+FSR S R+        E
Sbjct: 241 LRGVISSLDRFSRNSPRKGGFTRSGKE 267


>gi|331005926|ref|ZP_08329274.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
 gi|330420282|gb|EGG94600.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
          Length = 276

 Score =  328 bits (843), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 84/268 (31%), Positives = 143/268 (53%), Gaps = 7/268 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +P+   + +   I+LV+     NIG VARAM N  LT+L LV+P+D +PSE+A   ++NA
Sbjct: 9   SPESIKALQSIRIVLVNTSHPGNIGGVARAMKNMGLTELYLVSPKD-YPSERAEWRASNA 67

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V+ S  V   L +AIAD   +  T+AR R     ++ P+E A   +    S   V I+
Sbjct: 68  LDVLQSATVVDTLDDAIADCGLVIGTSARARRIPWPLVTPRECADR-SYHESSTHPVAIV 126

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GLTNEE+   N  +  P NP + SLN++ AV ++ +E     + + +      +
Sbjct: 127 FGREDRGLTNEELHKCNYHVHIPSNPDYSSLNLAAAVQVIAYEVRMTCLNNQQGKPIHFD 186

Query: 185 ----TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
                PA    L  + ++L+ +LE+ G+  P E  ++ +  L  ++ R  L   E+ +LR
Sbjct: 187 DWDMPPAKNNALEHYYEHLQSTLEKVGFLEP-ENPRQTMTRLRRLYSRVRLDEMELNILR 245

Query: 241 GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           G+++ +  F  ++ ++ N L  +T + +
Sbjct: 246 GVLTAMQNFVYRTEKKLNDLEVRTNEDK 273


>gi|148546113|ref|YP_001266215.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148510171|gb|ABQ77031.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida F1]
          Length = 279

 Score =  327 bits (840), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+D+ 
Sbjct: 30  LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNA 88

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V  +L++A+   + +  T+AR R+    ++ P+E      E    G+ + ++FGRE  G
Sbjct: 89  QVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHAKGGEEIALVFGREHAG 148

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  +  P NP F SLN++ AV ++ +E     + + E   K    +    A
Sbjct: 149 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELA 208

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F D+LE +L   G+  P EK K ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 209 TMDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 267

Query: 248 KFSRQSSRR 256
           K  R    +
Sbjct: 268 KVVRGEPHK 276


>gi|327190529|gb|EGE57623.1| putative tRNA/rRNA methyltransferase protein [Rhizobium etli
           CNPAF512]
          Length = 276

 Score =  327 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 186/260 (71%), Gaps = 2/260 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GPVIILV+PQ+GENIGMVARAM NF L  LRLVNPRDGWP+EKA+++
Sbjct: 1   MAGTNSERQLLAEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAA 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VI   RV+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L  +  +G+ 
Sbjct: 61  ASKADHVIAGTRVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEA 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +   E   
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVP 180

Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
            +  +  P+TK +L    D LE +L+ R YF P  KK KM+D+L ++  R     +E+ +
Sbjct: 181 FQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNN 258
           LRG++S+LD+F+R S R+  
Sbjct: 241 LRGVISSLDRFTRNSPRKGG 260


>gi|241204881|ref|YP_002975977.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858771|gb|ACS56438.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 276

 Score =  327 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 134/267 (50%), Positives = 186/267 (69%), Gaps = 2/267 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++
Sbjct: 1   MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VI++ +V+  L++A+ADL+F+YATTAR R+ +K V +P  AA  L  R  +G+ 
Sbjct: 61  ASKADHVIEATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEG 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEK 178
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +    +  
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVP 180

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                 TP+TK +L    D LE +L+ RGYF P  KK KM+D+L ++  R     +E+ +
Sbjct: 181 FQAMGQTPSTKDQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTE 265
           LRG++S+LD+FSR+S R         E
Sbjct: 241 LRGVISSLDRFSRKSPRGGRFPTAAKE 267


>gi|209549544|ref|YP_002281461.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535300|gb|ACI55235.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 276

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 133/267 (49%), Positives = 184/267 (68%), Gaps = 2/267 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++
Sbjct: 1   MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VI + +V+  L++A+ADL+F+YATTAR R+ +K V +P  AA  L  +   G+ 
Sbjct: 61  ASKADHVIAATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRAKFRVGEG 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEK 178
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +    +  
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDVGAVP 180

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                 TP+TK +L    D LE +L+ RGYF P  KK KM+D+L ++  R     +E+ +
Sbjct: 181 FQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTE 265
           LRG++S+LD+FSR+S R         E
Sbjct: 241 LRGVISSLDRFSRKSPRGGRFPTPAKE 267


>gi|116252374|ref|YP_768212.1| rRNA methylase family protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257022|emb|CAK08116.1| putative rRNA methylase family protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 276

 Score =  327 bits (838), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 134/267 (50%), Positives = 185/267 (69%), Gaps = 2/267 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA ++
Sbjct: 1   MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VI+  +V+  L++A+ADL+F+YATTAR R+ +K V +P  AA  L  R  +G+ 
Sbjct: 61  ASKADHVIEETKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETLRARFRAGEG 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEK 178
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +    +  
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVP 180

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                 TP+TK +L    D LE +L+ RGYF P  KK KM+D+L ++  R     +E+ +
Sbjct: 181 FQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRRAFTEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTE 265
           LRG++S+LD+FSR+S R         E
Sbjct: 241 LRGVISSLDRFSRKSPRGGRFPTAAKE 267


>gi|325293270|ref|YP_004279134.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325061123|gb|ADY64814.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 280

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 131/260 (50%), Positives = 184/260 (70%), Gaps = 2/260 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     +L+  A+GP IILV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++
Sbjct: 1   MAGTNSELELVAEGPAIILVEPQLGENIGMVARAMANFGLAELRLVKPRDGWPNEKARAA 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VID  +VF  L+EAI DL+F+YATTAR R  FK V AP  AA  L  +  +G+ 
Sbjct: 61  ASKADHVIDGTKVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAAGTLRAKFKAGER 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +   ++ +
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLDETL 180

Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
               +  P+TK ++    +++E +L+ RGYF P EKK KM+D+L ++  R     +E+ +
Sbjct: 181 FHPIEQRPSTKEQVFGLFEHIEEALDARGYFHPPEKKPKMVDNLRAVLSRRGFSEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNN 258
            RG++ +LD+F RQ  ++  
Sbjct: 241 FRGVIRSLDRFPRQWPKQAG 260


>gi|77460836|ref|YP_350343.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens Pf0-1]
 gi|77384839|gb|ABA76352.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 264

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +P+     +   ++LV+     NIG  ARAM N  L++L LV+PR  +P  +A + ++ A
Sbjct: 3   SPRAPAVLQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVDPR-VFPHHEADARASGA 61

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             ++++ +V + L++A+   + +  T+AR+R     +L P+E    + E    G  + ++
Sbjct: 62  GDILENAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAEIALV 121

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--- 181
           FGRE  GLTN+E+   +  +  P +P F SLN+  AV ++ +E     + +  +  K   
Sbjct: 122 FGREDSGLTNDELQRCHYHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAQGQPTKIEK 181

Query: 182 ------EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
                 +    AT  EL  F ++LE +L    +  P EK + ++  L  ++ R  + R E
Sbjct: 182 EEVASVKSAELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAE 240

Query: 236 VFLLRGIVSTLDKFSR 251
           + +LRGI++   K +R
Sbjct: 241 MNILRGILTETQKAAR 256


>gi|190892001|ref|YP_001978543.1| tRNA/rRNA methyltransferase [Rhizobium etli CIAT 652]
 gi|190697280|gb|ACE91365.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CIAT
           652]
          Length = 276

 Score =  326 bits (836), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/260 (51%), Positives = 188/260 (72%), Gaps = 2/260 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GPVIILV+PQ+GENIGMVARAM NF L  LRLVNPRDGWP+EKA+++
Sbjct: 1   MAGTNSERQLLAEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAA 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VI   RV+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L  +  +G+ 
Sbjct: 61  ASKADHVIAGTRVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEA 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++S+   E   
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSSMEDLEAVP 180

Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
            +  +  P+TK +L    + LE +L+ R YF P  KK KM+D+L ++  R     +E+ +
Sbjct: 181 FQALEQRPSTKEQLFGLFEQLEKALDSRNYFHPPSKKPKMVDNLRAVLSRRAFTEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNN 258
           LRG++S+LD+F+R S+R+  
Sbjct: 241 LRGVISSLDRFTRNSTRKGG 260


>gi|70732292|ref|YP_262048.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68346591|gb|AAY94197.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas
           fluorescens Pf-5]
          Length = 257

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 138/254 (54%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV PR  +PS +A + ++ A  ++++ 
Sbjct: 2   LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPR-VFPSHEADARASGATDILENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L++A+A    ++ T+AR+R     +L P+E+ + + E    G  V ++FGRE  G
Sbjct: 61  QVVATLEDALAGCTLVFGTSARDRRIPWPLLDPRESGLKVVEEAGQGAQVALVFGREDSG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183
           LTN+E+   +  +  P +P F SLN++ AV ++ +E   + + +  +  K +        
Sbjct: 121 LTNDELQRCHFHVHIPSDPEFSSLNLATAVQVLAYEVRMSWLAAQGQPSKVEKDEVASPR 180

Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            +  AT  EL  F ++L+ +L    +  P EK + ++  L  ++ R  + R E+ +LRGI
Sbjct: 181 SDELATMDELERFYEHLQQTLVAIDFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGI 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R   ++
Sbjct: 240 LTETQKAARGELQK 253


>gi|313497208|gb|ADR58574.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
          Length = 283

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+D+ 
Sbjct: 34  LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNA 92

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V  +L++A+   + +  T+AR R+    ++ P+E      E    G+ + ++FGRE  G
Sbjct: 93  QVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAG 152

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  +  P NP F SLN++ AV ++ +E     + + E   K    +    A
Sbjct: 153 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPRKVEKVDAAELA 212

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F D+LE +L   G+  P EK K ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 213 TMDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 271

Query: 248 KFSRQSSRR 256
           K  R    +
Sbjct: 272 KVVRGEPHK 280


>gi|222148422|ref|YP_002549379.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
 gi|221735410|gb|ACM36373.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
          Length = 286

 Score =  325 bits (835), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 131/255 (51%), Positives = 186/255 (72%), Gaps = 2/255 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQLGENIGMVARAM NF L +LRLVNPRDGWPSEKARS+++ AD VID  
Sbjct: 12  AEGPAIILVEPQLGENIGMVARAMANFGLAELRLVNPRDGWPSEKARSAASKADHVIDGA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +++  L+EA+ADL+F+YATTAR R+NFK V +P  AA  L  R  +G+  GI+FGRE+ G
Sbjct: 72  KLYDTLEEALADLNFVYATTARQRDNFKPVASPVTAASTLRTRFLAGEKTGILFGREKSG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L NE++AL++ I++FPVNP F SLNI+QAVLLM +E M++++    +         PA+K
Sbjct: 132 LKNEDVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSTMEDVTQTPFQGVDQLPASK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E++   +++E +L+ RGYFRP+ KK +M+D+L ++  R      E+ ++RG+VS+LD+F
Sbjct: 192 EEVIGLFEHMEDALDARGYFRPIHKKARMIDNLRAVLTRRGFTSPEINVMRGVVSSLDRF 251

Query: 250 SRQSSRRNNVLLQKT 264
           SR++ R     L+  
Sbjct: 252 SRRNPRGAGAPLEGD 266


>gi|104780226|ref|YP_606724.1| TrmH family tRNA methyltransferase [Pseudomonas entomophila L48]
 gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1
           [Pseudomonas entomophila L48]
          Length = 251

 Score =  325 bits (834), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 132/249 (53%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV P+  +PS +A + ++ AD ++D+V
Sbjct: 2   LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPK-AFPSAEASARASGADDLLDNV 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V   L++A+     +  T+AR R+    ++ P+E           G+ + ++FGRE  G
Sbjct: 61  QVVDTLEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVTHAVGGEEIALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  +  P NP F SLN++ AV ++ +E     +       K    + +  A
Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAGQGAATKVEKVDASELA 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F D+LE +L + G+  P EK K ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 181 TMDEMELFYDHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQ 239

Query: 248 KFSRQSSRR 256
           K +R    +
Sbjct: 240 KVARGEPHK 248


>gi|227356228|ref|ZP_03840617.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227163692|gb|EEI48608.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 242

 Score =  325 bits (833), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 6/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     N+G  ARAM    LT L  VNP++  P   + + SA A  VI + 
Sbjct: 2   LENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   + +AI     +  T+ARNR     +LAP+E      +     + V +IFGRER G
Sbjct: 61  HIVDTIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEAA-NKPVAVIFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           LTNEE+   +  +  P NP + SLN++ AV L+ +E    ++   EK   N   +     
Sbjct: 120 LTNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEKQEENASSEIDYPP 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++  F  +LE  L E G+ RP     +++  L  +F R     +E+ +LRGI+++++K
Sbjct: 180 AEDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELHILRGILTSVEK 238

Query: 249 FSRQ 252
           ++++
Sbjct: 239 WAKK 242


>gi|330504693|ref|YP_004381562.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328918979|gb|AEB59810.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 262

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 129/260 (49%), Gaps = 11/260 (4%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +        ++LV      NIG  ARAM N  L++L LV P + +PS  A + ++ A  V
Sbjct: 1   MSALLDNIRVVLVGTSHPGNIGGAARAMKNMGLSRLVLVAP-EDFPSGDAVARASGATDV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D+ +V   L+EA+     +  T+AR+R     +L P+E  +   E+  +G  V ++FGR
Sbjct: 60  LDAAQVVGTLEEALVGCTLVIGTSARDRRIPWPLLDPRECGVTSCEQAAAGGEVALVFGR 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---- 183
           E  GLTNEE+      +  P NP F SLN++ AV ++ +E     + +S    K +    
Sbjct: 120 EYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLET 179

Query: 184 -----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                +  AT  EL SF  +L   L   G+  P +K + ++  L  ++ R  + + E+ +
Sbjct: 180 TAMLSSQAATADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNI 238

Query: 239 LRGIVSTLDKFSRQSSRRNN 258
           LRGI++  +K  R    +  
Sbjct: 239 LRGILTETEKAVRGEPHKQG 258


>gi|222086156|ref|YP_002544688.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723604|gb|ACM26760.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 280

 Score =  324 bits (832), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 129/266 (48%), Positives = 189/266 (71%), Gaps = 2/266 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GP +ILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++
Sbjct: 1   MAGTNSERQLLAEGPAVILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD +I++ +V+  L++A+ADL+F+YATTAR R+ FK V +P  AA  L  R  +G+ 
Sbjct: 61  ASKADHIIEATKVYDTLEQAVADLNFVYATTARERDGFKPVRSPVVAAETLRARFKAGEG 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEK 178
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M+  +  V++  
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKTGMEDVAAVP 180

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
               +  P+TK +L    D LE +L+ R YF P  KK KM+D+L ++  R     +E+ +
Sbjct: 181 FQATEQRPSTKEQLFGLFDQLEEALDARNYFHPAGKKPKMIDNLRAVLSRRAFTEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKT 264
           LRG++S+LD+F+R+S R +    + +
Sbjct: 241 LRGVISSLDRFTRKSPRGSGSHPRSS 266


>gi|197285717|ref|YP_002151589.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
 gi|194683204|emb|CAR43857.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
          Length = 242

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 125/244 (51%), Gaps = 6/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     N+G  ARAM    LT L  VNP++  P   + + SA A  VI + 
Sbjct: 2   LENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   + +AI     +  T+ARNR     +LAP+E      +     + V +IFGRER G
Sbjct: 61  HIVETIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEAA-NKPVAVIFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           LTNEE+   +  +  P NP + SLN++ AV L+ +E    ++   EK   N   +     
Sbjct: 120 LTNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIRMAALAQQEKQEENASSEIDYPP 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++  F  +LE  L E G+ RP     +++  L  +F R     +E+ +LRGI+++++K
Sbjct: 180 AEDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELHILRGILTSVEK 238

Query: 249 FSRQ 252
           ++++
Sbjct: 239 WAKK 242


>gi|300724149|ref|YP_003713466.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630683|emb|CBJ91348.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           nematophila ATCC 19061]
          Length = 244

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 8/246 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     N+G  ARAM    L+ L LVNP    P   A + SA A  VI + 
Sbjct: 2   LENIRIILVETSHTGNMGSAARAMKTMGLSNLYLVNPLVQ-PDSNAIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + + L EA+A    +  T+AR+R     ++ P+E       +  +   V I+FGRER G
Sbjct: 61  TIVNTLDEALAGCELVIGTSARSRTLPWPMVEPRECGERCV-KASNHSPVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----NVKEQNTP 186
           LTNEE+   +  +  P NP + SLN++ AV L+ +E     +   EK     + + +   
Sbjct: 120 LTNEELQKCHYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAFQEKSEKTVSPEHETEY 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               ++  F  + E  L E G+ R V    ++++ L  ++ R     +E+ +LRGI++++
Sbjct: 180 PPIEDMERFYQHFEQVLSESGFIRKVH-PGQIMNRLRRLYTRARPETQELNILRGILTSM 238

Query: 247 DKFSRQ 252
           +K++++
Sbjct: 239 EKWAKK 244


>gi|145299545|ref|YP_001142386.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852317|gb|ABO90638.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 240

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 3/241 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    LT+L LV+P+   P + A + +A A  V+ + 
Sbjct: 2   LDQIRIVLVNISHTGNMGSAARAMKTMGLTRLVLVDPQ-TLPDDSAHALAAGASDVLANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV S L EAIAD   +  T+AR+R     +L P+EA             V ++FGRER G
Sbjct: 61  RVVSTLDEAIADCGLVIGTSARSRTLSWPMLDPREAGEKAVGEGMK-HPVALVFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTN+E+   +  ++ P NP + SLN++ AV  + +E     +      V+ +    +  +
Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQTICYEVRMCWLQDQAPEVESEADYPSAHQ 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L + G+    +   +++  L  +F R      E+ +LRGI++++ K   
Sbjct: 180 LEGFYQHLEQTLLKTGFI-ADDHPGQVMSKLRRLFNRARPEAIELNILRGILTSIQKPKP 238

Query: 252 Q 252
           Q
Sbjct: 239 Q 239


>gi|146308529|ref|YP_001188994.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145576730|gb|ABP86262.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas mendocina
           ymp]
          Length = 262

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 11/260 (4%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +        ++LV      NIG  ARAM N  L++L LV P + +PS  A + ++ A  V
Sbjct: 1   MAALLDKIRVVLVGTSHPGNIGGAARAMKNMGLSRLVLVAP-EDFPSGDAVARASGATDV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D+ +V   L+EA+     +  T+AR+R     +L P+E  +   E+   G  V ++FGR
Sbjct: 60  LDAAQVVDTLEEALVGCTLVVGTSARDRRIPWPLLDPRECGVTSCEQAAVGGEVALVFGR 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---- 183
           E  GLTNEE+      +  P NP F SLN++ AV ++ +E     + +S    K +    
Sbjct: 120 EYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVRMAWLTASSLPTKVEKLET 179

Query: 184 -----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                +  AT  EL SF  +L   L   G+  P +K + ++  L  ++ R  + + E+ +
Sbjct: 180 TAMLNSQAATADELESFYGHLRRVLVMIGFLDP-QKPRHLMTRLRRLYGRSAVSKLEMNI 238

Query: 239 LRGIVSTLDKFSRQSSRRNN 258
           LRGI++  +K  R    +  
Sbjct: 239 LRGILTETEKAVRGEPHKQG 258


>gi|255605057|ref|XP_002538330.1| conserved hypothetical protein [Ricinus communis]
 gi|223512695|gb|EEF24052.1| conserved hypothetical protein [Ricinus communis]
          Length = 259

 Score =  323 bits (828), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 129/259 (49%), Positives = 184/259 (71%), Gaps = 2/259 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+E+A+++
Sbjct: 1   MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD +I++ +V+  L++AIADL+F+YATTAR R  +K V +P  AA  L  +  +G+ 
Sbjct: 61  ASKADHIIEATKVYDTLEQAIADLNFVYATTARERYGYKPVRSPVAAAETLRAKFKAGEG 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEK 178
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +    +  
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDLGAVP 180

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                  P+TK +L    D LE +L+ R YF P  KK KM+D+L ++  R     +E+ +
Sbjct: 181 FQAVGQRPSTKEQLFGLFDQLEEALDARNYFHPAGKKPKMVDNLRAVLSRRAFTEQEISV 240

Query: 239 LRGIVSTLDKFSRQSSRRN 257
           LRG++S+LD+FSR+S R +
Sbjct: 241 LRGVISSLDRFSRKSPRGS 259


>gi|229592455|ref|YP_002874574.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           SBW25]
 gi|229364321|emb|CAY52068.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           SBW25]
          Length = 256

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 130/249 (52%), Gaps = 11/249 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG VARAM N  LT+L LV PR  +P  +A + ++ A+ +++  
Sbjct: 2   LQNIRVVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPR-LFPHHEADARASGANDILEKA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L++A+   + +  T+AR+R     +L P+E    + E    G  + ++FGRE  G
Sbjct: 61  QVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAGGAEIALVFGREDSG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183
           LTNEE+   +  +  P +P F SLN+  AV ++ +E     + +  +  K +        
Sbjct: 121 LTNEELQRCHYHVHIPSDPDFSSLNLGAAVQVLSYEVRMAWLAAEGQPSKVEKDEVASIK 180

Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  EL  F ++LE +L    +  P EK + ++  L  ++ R  + R E+ +LRGI
Sbjct: 181 SGELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGI 239

Query: 243 VSTLDKFSR 251
           ++   K +R
Sbjct: 240 LTETQKAAR 248


>gi|146283375|ref|YP_001173528.1| methyltransferase [Pseudomonas stutzeri A1501]
 gi|145571580|gb|ABP80686.1| probable methyltransferase [Pseudomonas stutzeri A1501]
 gi|327481767|gb|AEA85077.1| methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 278

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 11/255 (4%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S +   ++LV+     NIG  ARAM N  L++L LV+P + +PS  A + ++ A  ++DS
Sbjct: 22  SLQNIRVVLVNTSHAGNIGGAARAMKNMGLSRLVLVDP-EDFPSPDAVARASGATDILDS 80

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +V + L+EA+     +  T+AR+R     +L P+E A V  E+  +G +V ++FGRE  
Sbjct: 81  AQVVATLEEALVGCSLVLGTSARDRRIPWPLLDPRECAAVSVEQAAAGSDVALVFGREYA 140

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------ 184
           GLTNEE+      +  P +P F SLN++ AV ++ +E     + +  +  K +       
Sbjct: 141 GLTNEELQRCQYHVHIPSDPQFSSLNLAAAVQVLTYEVRMAWLAAEGRPTKVEKLETTAM 200

Query: 185 ---TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
               P T  EL ++  +LE +L + G+  P  K + ++  L  ++ R  + + E+ +LRG
Sbjct: 201 LDAQPVTVDELENYFGHLEQTLVDIGFLDPA-KPRHLMPRLRRLYGRSGISKLEMNILRG 259

Query: 242 IVSTLDKFSRQSSRR 256
           I++   K +R    +
Sbjct: 260 ILTETQKAARGEPHK 274


>gi|51102914|gb|AAT96063.1| group 1 trmH family protein [Pseudomonas viridiflava]
          Length = 255

 Score =  322 bits (826), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 136/252 (53%), Gaps = 9/252 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++L+      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLIGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ + + + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALTGCRLVLGTSARDRSLPWPMLDPRASGVKVVEQAGQGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E   + + +SE+   +++       
Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMSWLAASEQPAHDESSKMAHNA 180

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             AT  E+  F  +LE +L   G+  P EK + ++  L  +F R E+   E+ +LRGI++
Sbjct: 181 ELATMDEMEGFYGHLEATLVAIGFLDP-EKPRHLMARLRRLFGRSEVEHSELSILRGILT 239

Query: 245 TLDKFSRQSSRR 256
              K +R    +
Sbjct: 240 ETQKAARGEPYK 251


>gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24982250|gb|AAN66464.1|AE016275_9 RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           KT2440]
          Length = 251

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+D+ 
Sbjct: 2   LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V  +L++A+   + +  T+AR R+    ++ P+E      E    G+ + ++FGRE  G
Sbjct: 61  QVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  +  P NP F SLN++ AV ++ +E     + + E   K    +    A
Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPGKVEKVDAAELA 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F D+LE +L   G+  P EK K ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 181 TMDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 239

Query: 248 KFSRQSSRR 256
           K  R    +
Sbjct: 240 KVVRGEPHK 248


>gi|270264747|ref|ZP_06193012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera 4Rx13]
 gi|270041430|gb|EFA14529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera 4Rx13]
          Length = 244

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 5/243 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L +AIA    +  T+AR+R     +L P+E  +           V ++FGRER GLT
Sbjct: 63  VDTLDDAIAGCSLVVGTSARSRTLPWPMLEPRECGVRAVHE-GEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGE 191
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   +  V   E+       +
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQVGVPQLEETPYPLVDD 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L+  G+ RP     +++  L  +F R     +E+ +LRG++++++K  +
Sbjct: 182 LERFYQHLEQTLQHSGFIRPAH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIEKQDK 240

Query: 252 QSS 254
              
Sbjct: 241 HQG 243


>gi|150396729|ref|YP_001327196.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
 gi|150028244|gb|ABR60361.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium medicae
           WSM419]
          Length = 276

 Score =  322 bits (826), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 131/258 (50%), Positives = 185/258 (71%), Gaps = 2/258 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +GP IIL  PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID  +
Sbjct: 13  EGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAK 72

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++  L+EA+ADL+F+YATTAR+R+ FK V +P  AA  L +R   GQ VGIIFGRER GL
Sbjct: 73  LYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRQRFSVGQKVGIIFGRERTGL 132

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190
           TN E+AL++ I++FPVNP F SLN++QAVLLM +E ++  + S ++      +  PATK 
Sbjct: 133 TNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMASEDETFFQPSEQRPATKE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L    ++LE +L+ R YFR  +KK K++++L ++  RP     E+ +LRG++S+LD+F+
Sbjct: 193 QLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRFT 252

Query: 251 RQSSRRNNVLLQKTEKSE 268
           R+S R +      + K  
Sbjct: 253 RESPRGSAAPPGYSRKEH 270


>gi|330807633|ref|YP_004352095.1| tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375741|gb|AEA67091.1| putative tRNA/rRNA methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 256

 Score =  322 bits (825), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 128/249 (51%), Gaps = 11/249 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV PR  +P  +A + ++ A  ++ + 
Sbjct: 2   LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPR-LFPHHEADARASGAGDILANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L++A+   + +  T+AR+R     +L P+E    + E    G  + ++FGRE  G
Sbjct: 61  QVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAAQGFEIALVFGREDSG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182
           LTN+E+   +  +  P +P F SLN+  AV ++ +E     + +  K             
Sbjct: 121 LTNDELQRCHFHVHIPSDPEFSSLNLGAAVQVLSYEVRMAWLAAEGKPSKIEKTEVTSPR 180

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
             T AT  EL  F ++LE +L +  +  P EK + ++  L  ++ R  + R E+ +LRGI
Sbjct: 181 SETLATMDELERFYEHLEQTLVDIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGI 239

Query: 243 VSTLDKFSR 251
           ++   K +R
Sbjct: 240 LTETQKAAR 248


>gi|221133855|ref|ZP_03560160.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Glaciecola sp. HTCC2999]
          Length = 238

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 4/241 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     NIG  ARAM    L+ L LV+P    P  K+ + +A A  V+ + 
Sbjct: 2   LDNIRIVLVNTSHTGNIGSTARAMKTMGLSDLYLVDPVSA-PDGKSSALAAGAGDVLANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + S+L EA+ D   I  T+AR+R     +L P+E  + + +    G  V ++FGRE  G
Sbjct: 61  TIVSDLSEAVKDCSLIVGTSARSRTLPWPMLTPRECGVKMVQEGQKG-PVALVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+ L +  +  P NP + SLN++ AV  + +E     +        E + P +  +
Sbjct: 120 LSNEELQLCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMGYLNLDSYPDMESDYPLS-ED 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L E G+         ++  L  +  R     +E+ +LRGI+S +DK ++
Sbjct: 179 LERFYVHLENTLTETGFIVKNH-PGVVMTKLRRLVNRARPESQELNILRGILSAIDKKNK 237

Query: 252 Q 252
           Q
Sbjct: 238 Q 238


>gi|239994266|ref|ZP_04714790.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii ATCC 27126]
          Length = 254

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 4/257 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     NIG  ARAM    L+ L LV+P +  P  +A + +A A  V+ + 
Sbjct: 2   LENIRIILVNTSHTGNIGSTARAMKTMGLSSLYLVDPVNE-PDGQASALAAGAGDVLANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ S L+EA+ D   +  T+AR+R +   +L P++    L + +     V ++FGRE  G
Sbjct: 61  KIVSTLEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+   +  +  P NP + SLN++ AV  + +E     +        E+  P    +
Sbjct: 120 LTNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAYLNRETYPSVEEEYP-LNDD 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +LE   + R       ++  L  +F R     +E+ +LRGI++++DK  +
Sbjct: 179 LERFYTHLETTLEGTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVK 237

Query: 252 QSSRRNNVLLQKTEKSE 268
            ++  +       E+ E
Sbjct: 238 NANSGDADPAPAIEEKE 254


>gi|322831757|ref|YP_004211784.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
 gi|321166958|gb|ADW72657.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
          Length = 245

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 7/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    L+ L LVNP    P  +A S SA A  VI + 
Sbjct: 2   LPNIRIVLVETSHTGNMGSTARAMKTMGLSSLYLVNPLVK-PDSQAISLSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E     + +      V ++FGRER G
Sbjct: 61  TIVDTLDEALAGCSLVIGTSARSRTLPWPMLEPRECGEH-SAKAAQTAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----VSSEKNVKEQNTPA 187
           LTNEE+   N  +  P NP + SLN++ AV ++ +E     +     +  +   E+    
Sbjct: 120 LTNEELQKCNYHVCIPANPEYSSLNLAMAVQIIAYEVRVAHLALLEAAKPQIEYEETPYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  +LE +L E G+ R      +++  L  +F R     +E+ +LRGI+++++
Sbjct: 180 LVDDLERFYQHLEKTLLETGFIRQAH-PGQVMSKLRRLFTRARPESQELNILRGILTSIE 238

Query: 248 KFS 250
           K  
Sbjct: 239 KTH 241


>gi|109897560|ref|YP_660815.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109699841|gb|ABG39761.1| RNA methyltransferase, TrmH family, group 1 [Pseudoalteromonas
           atlantica T6c]
          Length = 241

 Score =  321 bits (824), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 3/240 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     NIG  ARAM    L+QL LV+P    P  K+ + +A A  V+ + 
Sbjct: 2   LENIKIVLVNTSHTGNIGSTARAMKTMGLSQLVLVDP-VSPPDGKSSALAAGAGDVLANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ S + EA+AD   +  T+AR+R     +L P+E    L   +     V ++FGRE  G
Sbjct: 61  KIVSTVAEAVADCGLVVGTSARSRTLSWPMLEPRECGEKLVSEVPK-YPVALVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+   +  +  P NP + SLN++ AV  + +E     +  + +    Q       +
Sbjct: 120 LSNEELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRREANVQEEYPLADD 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L +  +  P +    ++  L  +F R     +E+ +LRGI+++++K S+
Sbjct: 180 LEGFYSHLEQTLHKTNFIIP-QHPGMVMTKLRRLFNRARPETQELNILRGILASIEKSSK 238


>gi|238753893|ref|ZP_04615253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           ruckeri ATCC 29473]
 gi|238707881|gb|EEQ00239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           ruckeri ATCC 29473]
          Length = 257

 Score =  321 bits (824), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 7/257 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A  + +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCNLVIGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS----SEKNVKEQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +      +  + +E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQAAITPLSEEEEAPYPLI 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L + G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYQHLEQVLSQTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQKTEK 266
            +     NN  ++K ++
Sbjct: 241 DKYQKSANNAHMKKDKE 257


>gi|157371864|ref|YP_001479853.1| RNA methyltransferase [Serratia proteamaculans 568]
 gi|157323628|gb|ABV42725.1| RNA methyltransferase, TrmH family, group 1 [Serratia
           proteamaculans 568]
          Length = 244

 Score =  321 bits (824), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 5/243 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L +AIA    +  T+AR+R     +L P+E  I           V ++FGRER GLT
Sbjct: 63  VDTLDDAIAGCSLVVGTSARSRTLPWPMLEPRECGIRAVHE-GEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGE 191
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   +      E+       +
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVRVAYLDRQQAGAPQLEETPYPLVDD 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L+  G+ RP     +++  L  +F R     +E+ +LRG++++++K  +
Sbjct: 182 LERFYQHLEQTLQHSGFIRPSH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIEKQDK 240

Query: 252 QSS 254
              
Sbjct: 241 HQG 243


>gi|254480252|ref|ZP_05093500.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2148]
 gi|214039814|gb|EEB80473.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2148]
          Length = 250

 Score =  321 bits (823), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 138/249 (55%), Gaps = 6/249 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     I+LV+     NIG VARAM N  L++L LV PR  +P E+A   +A+A  V+D+
Sbjct: 2   NLNNIRIVLVNTSHPGNIGGVARAMKNMGLSRLYLVEPRQ-FPDEQADWRAASAADVLDT 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V  +L+EAIAD  F+  T+AR R     +L P++ A  +     + + V ++FGRE  
Sbjct: 61  AVVTESLEEAIADCQFVVGTSARGRRIPWPLLDPRQCAERM-ALASNDEQVAVLFGREDR 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEKNVKEQNTPAT 188
           GLTN+E+ L N  ++ P +  + SLN++ AV ++ +E     NS +  +   +E +TP T
Sbjct: 120 GLTNDELKLCNLHLNIPTSEDYSSLNLAMAVQVVCYELRMLLNSPLLPKTEDEEWDTPFT 179

Query: 189 KGE-LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            GE +  F  +LE +L +  +  P    ++++  L  ++ R  L   E+ +LRGI++   
Sbjct: 180 TGENMERFYSHLEETLTDIEFLDPA-APRQLMVRLRRLYSRVRLDEMELNILRGILTETQ 238

Query: 248 KFSRQSSRR 256
           K+  +S  +
Sbjct: 239 KWVSKSKNK 247


>gi|170023520|ref|YP_001720025.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|169750054|gb|ACA67572.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis YPIII]
          Length = 257

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI    +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGKATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   + N      E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAYLDRQQANAPVEEEEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQKTEK 266
            +   R       K++ 
Sbjct: 241 DKYPQRGTGDTADKSKD 257


>gi|167031897|ref|YP_001667128.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166858385|gb|ABY96792.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           GB-1]
          Length = 251

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 132/249 (53%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+D+ 
Sbjct: 2   LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLDNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  +L++A+   + +  T+AR R+    ++ P+E      E    G+ + ++FGRE  G
Sbjct: 61  LVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  +  P NP F SLN++ AV ++ +E     + + E   K    +    A
Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVRMAWLAAGEAPEKVEKVDATELA 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F D+LE +L   G+  P EK K ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 181 TMDEMELFYDHLEKTLVGIGFLDP-EKPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 239

Query: 248 KFSRQSSRR 256
           K  R    +
Sbjct: 240 KVVRGEPHK 248


>gi|192360664|ref|YP_001981951.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190686829|gb|ACE84507.1| RNA methyltransferase, TrmH family, group 1 [Cellvibrio japonicus
           Ueda107]
          Length = 286

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 11/256 (4%)

Query: 8   LQNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           + N+A  P     I+LV+     NIG  ARAM N  L +L LV P++ +PS+KA   +A 
Sbjct: 1   MSNAANAPFANIRIVLVNTSHPGNIGGAARAMKNMGLDRLYLVAPKE-YPSDKAVWRAAG 59

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  V+D+  V   L EAIA    +  T+AR R     +L P++    +       + V +
Sbjct: 60  ATDVLDNAVVVETLDEAIAGCSLVVGTSARERRIPWPLLDPRQCGESIWAEAGEHE-VAV 118

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KN 179
           +FGRE  GLTNEE+      +  P N  + SLN++ AV ++ +E     + + E     N
Sbjct: 119 VFGREDRGLTNEELHKCTYHVHIPANAEYSSLNLATAVQVICYEIRMAYLQAVEGKSLPN 178

Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                 PA  G L ++  +LE +L + G+  P +  K+ +  L  ++ R  L + E+ +L
Sbjct: 179 HHWDMPPADAGALENYYQHLEQALVDLGFLDP-DNPKQTMTRLRRLYNRVRLDQMELNIL 237

Query: 240 RGIVSTLDKFSRQSSR 255
           RG+++ +  +   + +
Sbjct: 238 RGVLTAMQNYVYYTGK 253


>gi|261820557|ref|YP_003258663.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
 gi|261604570|gb|ACX87056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
          Length = 241

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 5/241 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +L +A+     +  T+AR+R     +L P+E  +   +       V ++FGRER G
Sbjct: 61  TIVDSLDQALEGCSLVVGTSARSRTLPWPMLDPRECGVRSAQEA-EHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTN+E+   +  ++ P NP + SLN++ AV ++ +E     +  +   K   E++     
Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQVGKPEHEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L + G+ RP  +  ++++ L  +F R     +E+ +LRGI+S++ K 
Sbjct: 180 DDLERFYQHLEETLLQTGFIRPAHQ-GQVMNKLRRLFTRARPEAQELNILRGILSSVQKT 238

Query: 250 S 250
            
Sbjct: 239 H 239


>gi|260460844|ref|ZP_05809094.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
           opportunistum WSM2075]
 gi|259033421|gb|EEW34682.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
           opportunistum WSM2075]
          Length = 306

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 135/252 (53%), Positives = 178/252 (70%), Gaps = 2/252 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           SA GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+
Sbjct: 11  SAAGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDA 70

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+VF +L  A+ADL+F++ATTAR R+ FK+V  P EA  VL  R   GQ  GI+FGRER+
Sbjct: 71  VKVFDDLASALADLNFVFATTARQRDGFKTVRGPVEAGRVLRARHGMGQRTGILFGRERF 130

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPAT 188
           GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ +    +         PA+
Sbjct: 131 GLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETRTNFSGPDMKPAS 190

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K EL     YLE +LE RGYFRP  KK KM+D+L ++  R      E+ +LRGI+S+LD+
Sbjct: 191 KEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIISSLDR 250

Query: 249 FSRQSSRRNNVL 260
           FS    R +   
Sbjct: 251 FSPAMPRGDGSP 262


>gi|22125231|ref|NP_668654.1| ATP synthase beta subunit [Yersinia pestis KIM 10]
 gi|45442336|ref|NP_993875.1| SpoU family rRNA methylase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597177|ref|YP_071368.1| SpoU family rRNA methylase [Yersinia pseudotuberculosis IP 32953]
 gi|108808333|ref|YP_652249.1| SpoU family rRNA methylase [Yersinia pestis Antiqua]
 gi|108811402|ref|YP_647169.1| SpoU rRNA methylase family [Yersinia pestis Nepal516]
 gi|145599515|ref|YP_001163591.1| SpoU rRNA methylase family [Yersinia pestis Pestoides F]
 gi|149365357|ref|ZP_01887392.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
 gi|153947216|ref|YP_001400147.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|162420842|ref|YP_001605042.1| RNA methyltransferase [Yersinia pestis Angola]
 gi|165928245|ref|ZP_02224077.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166008335|ref|ZP_02229233.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212473|ref|ZP_02238508.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399653|ref|ZP_02305177.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421340|ref|ZP_02313093.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423345|ref|ZP_02315098.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470018|ref|ZP_02334722.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis FV-1]
 gi|186896271|ref|YP_001873383.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|218929957|ref|YP_002347832.1| putative SpoU family rRNA methylase [Yersinia pestis CO92]
 gi|229838482|ref|ZP_04458641.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895487|ref|ZP_04510658.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
 gi|229899051|ref|ZP_04514195.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901656|ref|ZP_04516778.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
 gi|270489848|ref|ZP_06206922.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
           D27]
 gi|294504542|ref|YP_003568604.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
 gi|81638848|sp|Q667X9|TRMJ_YERPS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122383052|sp|Q1C5G8|TRMJ_YERPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122384969|sp|Q1CKB1|TRMJ_YERPN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123776962|sp|Q7CJN8|TRMJ_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|166234839|sp|A4TMV6|TRMJ_YERPP RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|21958100|gb|AAM84905.1|AE013736_1 putative ATP synthase beta subunit [Yersinia pestis KIM 10]
 gi|45437200|gb|AAS62752.1| putative SpoU-family rRNA methylase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590459|emb|CAH22099.1| putative SpoU-family rRNA methylase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775050|gb|ABG17569.1| SpoU-family rRNA methylase [Yersinia pestis Nepal516]
 gi|108780246|gb|ABG14304.1| putative SpoU-family rRNA methylase [Yersinia pestis Antiqua]
 gi|115348568|emb|CAL21509.1| putative SpoU-family rRNA methylase [Yersinia pestis CO92]
 gi|145211211|gb|ABP40618.1| SpoU-family rRNA methylase [Yersinia pestis Pestoides F]
 gi|149291770|gb|EDM41844.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
 gi|152958711|gb|ABS46172.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353657|gb|ABX87605.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis
           Angola]
 gi|165919752|gb|EDR37085.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992717|gb|EDR45018.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206404|gb|EDR50884.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960829|gb|EDR56850.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052157|gb|EDR63565.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057515|gb|EDR67261.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186699297|gb|ACC89926.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681585|gb|EEO77679.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
 gi|229687996|gb|EEO80068.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694848|gb|EEO84895.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701293|gb|EEO89321.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
 gi|262362465|gb|ACY59186.1| putative SpoU-family rRNA methylase [Yersinia pestis D106004]
 gi|262366530|gb|ACY63087.1| putative SpoU-family rRNA methylase [Yersinia pestis D182038]
 gi|270338352|gb|EFA49129.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
           D27]
 gi|294355001|gb|ADE65342.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
 gi|320016041|gb|ADV99612.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 257

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI    +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGKATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   + N      E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAYLDRQQANAPVEEEEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYQHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQKTEK 266
            +   R       K++ 
Sbjct: 241 DKYPQRGTGDTAGKSKD 257


>gi|227112706|ref|ZP_03826362.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 241

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 5/241 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  +A+     +  T+AR+R     +L P+E  +   +       V ++FGRER G
Sbjct: 61  TIVDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSAQEA-EHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV ++ +E     +  + + +   E++     
Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L + G+ RP  +  ++++ L  +F R     +E+ +LRGI+S++ K 
Sbjct: 180 DDLERFYQHLEQTLLQTGFIRPAHQ-GQVMNKLRRLFTRARPESQELNILRGILSSVQKT 238

Query: 250 S 250
            
Sbjct: 239 H 239


>gi|227329515|ref|ZP_03833539.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 241

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 5/241 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  +A+     +  T+AR+R     +L P+E  I   +       V ++FGRER G
Sbjct: 61  TIVDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGIRSAQEA-EHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV ++ +E     +  + + +   E++     
Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L + G+ RP  +  ++++ L  +F R     +E+ +LRGI+S++ K 
Sbjct: 180 DDLERFYQHLEQTLLQTGFIRPAHQ-GQVMNKLRRLFTRARPESQELNILRGILSSVQKT 238

Query: 250 S 250
            
Sbjct: 239 H 239


>gi|149375019|ref|ZP_01892792.1| rRNA methylase [Marinobacter algicola DG893]
 gi|149360908|gb|EDM49359.1| rRNA methylase [Marinobacter algicola DG893]
          Length = 284

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 129/259 (49%), Gaps = 17/259 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV+     NIG VARAM N  L  L LVNP   +P E + + +A A  ++D   V 
Sbjct: 18  IRIVLVETSHSGNIGAVARAMKNMGLGNLWLVNP-VSFPDEASYARAAGASDILDKATVV 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S L EAIAD   +  T+AR R     V+AP  AA   +++  +GQ V ++FGRE  GL+N
Sbjct: 77  STLDEAIADCVCVMGTSARGRKVPWPVIAPPGAAAKASQQSEAGQ-VALVFGRENHGLSN 135

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--------------SEKNV 180
           EE+   +  I  P NP + SLN++ AV +M +E   + +                +  + 
Sbjct: 136 EELQRCHFHIHIPSNPDYSSLNLAMAVQVMCYELRMHYLKGLEGGDGSPYLKPMMAPGDE 195

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
                PA   ++  F  +LE  L +  + R  +  ++++  L  +F R  L + E+ +LR
Sbjct: 196 GWDVPPAPVRDVEGFFSHLEQVLVDVDFHR-RDNPRQLMTRLRRLFQRAGLDQMEINILR 254

Query: 241 GIVSTLDKFSRQSSRRNNV 259
           GI++ + K +  +    N 
Sbjct: 255 GILTAVQKSAGAAETAKNT 273


>gi|295097922|emb|CBK87012.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 5/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSISEAEQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TK 189
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + + EK V+ +   A    
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKPVEPKEETAYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++ 
Sbjct: 180 DDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRMFTRARPESQELNILRGILASIEQK 238

Query: 250 SRQ 252
           +++
Sbjct: 239 NKE 241


>gi|288549938|ref|ZP_05968701.2| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317270|gb|EFC56208.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
           cancerogenus ATCC 35316]
          Length = 263

 Score =  320 bits (821), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 126/243 (51%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 24  LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 82

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 83  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAVQ-APVALVFGRERVG 141

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + EK     +E+     
Sbjct: 142 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKARTEPQEEKAYPL 201

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 202 VDDLERFYGHLEQTLLSTGFIR-QDHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 260

Query: 249 FSR 251
            ++
Sbjct: 261 KNK 263


>gi|13470359|ref|NP_101925.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14021098|dbj|BAB47711.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 303

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 135/262 (51%), Positives = 179/262 (68%), Gaps = 2/262 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
             Q    GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD 
Sbjct: 5   DFQRGPGGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADH 64

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           VID+V+VF +L  A+ADL+F++ATTAR R+ FK+V  P EA  VL  R   GQ  GI+FG
Sbjct: 65  VIDAVKVFDDLASALADLNFVFATTARQRDGFKAVRGPVEAGRVLRARHGMGQRTGILFG 124

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQN 184
           RER+GL N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ +    K      + 
Sbjct: 125 RERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPEM 184

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA+K EL     YLE +LE RGYFRP  KK KM+D+L ++  R      E+ +LRGI+S
Sbjct: 185 KPASKEELHGLFAYLEGALEARGYFRPAPKKPKMVDNLRAVLTRAGFAEPELKVLRGIIS 244

Query: 245 TLDKFSRQSSRRNNVLLQKTEK 266
           +LD+FS    R +        +
Sbjct: 245 SLDRFSPAMPRGDGSPGDDPRR 266


>gi|194432193|ref|ZP_03064482.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|194419722|gb|EDX35802.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|332089667|gb|EGI94768.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 155-74]
          Length = 245

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     NIG VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNIGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|126668572|ref|ZP_01739526.1| rRNA methylase [Marinobacter sp. ELB17]
 gi|126626977|gb|EAZ97620.1| rRNA methylase [Marinobacter sp. ELB17]
          Length = 290

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 17/254 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV+     NIG VARAM N  L  L +VNPR  +P E + + +A A  V+D+  V 
Sbjct: 18  IRIVLVETSHSGNIGAVARAMKNMGLGNLWMVNPR-SFPDETSYARAAGASDVLDTATVV 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L EA+AD   +  T+AR R     V+ P +AA         G  V ++FGRE  GL+N
Sbjct: 77  GSLDEALADCVLVMGTSARGRKVPWPVMPPDQAATAAASHCGQG-TVALVFGRENHGLSN 135

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--------------VSSEKNV 180
           EE+   +  I  P NP + SLN++ AV +M +E   + +              ++   + 
Sbjct: 136 EELQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMSYLKGLESDARRPYLERIAQPGDA 195

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
                PA+ G++  F  +L+  LEE  + R  +K ++++  L  +F R ++ + EV +LR
Sbjct: 196 GWDVAPASVGDVEGFFGHLQQVLEEIDFHR-RDKPRQLMARLRRLFQRAKMDQMEVNILR 254

Query: 241 GIVSTLDKFSRQSS 254
           G++S + K +  S 
Sbjct: 255 GVLSAVQKTAGASG 268


>gi|212710634|ref|ZP_03318762.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
           30120]
 gi|212686715|gb|EEB46243.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
           30120]
          Length = 243

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G  ARAM    L+ L LVNP    P   + + SA A  VI + 
Sbjct: 2   LENIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVE-PDSHSIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V  +L EA+     +  T+AR+R     ++ P+E  +   E+      V I+FGRER G
Sbjct: 61  KVVKSLDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQAKD-APVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----VKEQNTPA 187
           LTNEE+   N  +  P NP + SLN++ AV L+ +E     +  +EKN    V ++    
Sbjct: 120 LTNEELQRCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAIAEKNTQTSVDDEVEYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  +LE  L E G+ R       +++ L  +F R  +  +E+ +LRGI+++++
Sbjct: 180 PAEDLERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSME 238

Query: 248 KFSRQ 252
           K++++
Sbjct: 239 KWAKK 243


>gi|206578299|ref|YP_002237115.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|288934076|ref|YP_003438135.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|290508272|ref|ZP_06547643.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
 gi|206567357|gb|ACI09133.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|288888805|gb|ADC57123.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|289777666|gb|EFD85663.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
          Length = 244

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 7/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAE-GQHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + + E+       E+    
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEQAQPAVDHEEAPYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  +LE +L   G+ RP     ++++ L  +F R     +E+ +LRG++++++
Sbjct: 180 LVDDLERFYGHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIE 238

Query: 248 KFSR 251
           + ++
Sbjct: 239 QQNK 242


>gi|254470267|ref|ZP_05083671.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
           JE062]
 gi|211960578|gb|EEA95774.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
           JE062]
          Length = 256

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/252 (47%), Positives = 169/252 (67%), Gaps = 3/252 (1%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M+   P+  N+A  PV++L +PQLGENIGMVARAM NF L  LRL+NPRDGWPSEKARS+
Sbjct: 1   MSESTPET-NTAIPPVVVLCEPQLGENIGMVARAMANFGLHDLRLINPRDGWPSEKARSA 59

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S+ A  VID+ RVF +++EA+ADL  ++ATTAR+R+  K V+ P EAA     +   G  
Sbjct: 60  SSRAHHVIDAARVFDSVEEAVADLKLVFATTARSRDIPKPVVGPDEAANESVAQGLRGIP 119

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            G +FGRERWGL N+E+AL+N I++ PV+P + SLNI+QAVL+  +E    +   +    
Sbjct: 120 SGYLFGRERWGLNNDEVALANKIVTLPVDPTYASLNIAQAVLVCAYEWRRVATAGALPFS 179

Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
            +  +  PAT+  +    D+LE  L+ RG+FRPVEKK   +  L +IF + +L   EV +
Sbjct: 180 LDDYEGEPATQESIQRMFDHLESGLDARGFFRPVEKKPVTIRRLRNIFQKADLTDNEVRI 239

Query: 239 LRGIVSTLDKFS 250
           +RG++S  +K+ 
Sbjct: 240 MRGVISCFEKYG 251


>gi|271501587|ref|YP_003334613.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345142|gb|ACZ77907.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech586]
          Length = 248

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 5/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G  ARAM    LT L LVNP    P  +A S SA A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L +A+     +  T+AR+R     +L P+E   VL+ +      V I+FGRER G
Sbjct: 61  TIVDTLDQALEGCGLVVGTSARSRTLPWPMLEPRECG-VLSIQEAQHAPVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV ++ +E     +   ++     E++     
Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQQGEVAHEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L   G+ R   +  ++++ L  +F R     +E+ +LRGI+S + K 
Sbjct: 180 DDLERFYQHLEDTLLHTGFIRQSHQ-GQVMNKLRRLFTRARPETQELNILRGILSAITKT 238

Query: 250 SRQSSRRNN 258
           +     +NN
Sbjct: 239 TPSDPSQNN 247


>gi|332307520|ref|YP_004435371.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174849|gb|AEE24103.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 240

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 4/243 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     NIG  ARAM    L+QL LV+P    P  KA + +A A  V+ + 
Sbjct: 2   LENIKIVLVNTSHTGNIGSTARAMKTMGLSQLVLVDP-VSPPDGKASALAAGAGDVLANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ S L EA+AD   +  T+AR+R     +L P+     L   +     V ++FGRE  G
Sbjct: 61  KIVSTLAEAVADCGLVVGTSARSRTLSWPMLEPRGCGEKLVSEVPK-YPVALVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+N+E+   +  +  P NP + SLN++ AV  + +E     +  + +   ++  P    +
Sbjct: 120 LSNDELQQCHFHVCIPANPEYSSLNLAAAVQTLCYEIRMAHLNETRRESVQEEYP-LAED 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L +  +  P      ++  L  +F R     +E+ +LRGI+++++K S+
Sbjct: 179 LEGFYSHLEQTLFKTNFIIPKH-PGMVMTKLRRLFNRARPETQELNILRGILASIEKTSK 237

Query: 252 QSS 254
           ++ 
Sbjct: 238 ENK 240


>gi|320539263|ref|ZP_08038933.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
 gi|320030655|gb|EFW12664.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
          Length = 244

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 5/241 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-IKPDSQAIALAAGASDVIGNAAL 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + +AI     +  T+AR+R     +L P+E  +    +      V ++FGRER GLT
Sbjct: 63  VDTVDDAINGCSLVVGTSARSRTLPWPMLEPRECGVRAV-QAGEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGE 191
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   +     +E+       +
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYELRVAYLDRQQTGGTPQEETPYPLVDD 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L+  G+ RP     +++  L  +F R     +E+ +LRG++++++K  +
Sbjct: 182 LERFYQHLEQTLQRTGFIRPAH-PGQVMSRLRRLFTRARPEEQELNILRGMLTSIEKQDK 240

Query: 252 Q 252
            
Sbjct: 241 N 241


>gi|15965543|ref|NP_385896.1| hypothetical protein SMc00482 [Sinorhizobium meliloti 1021]
 gi|307302663|ref|ZP_07582419.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           BL225C]
 gi|307318510|ref|ZP_07597944.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           AK83]
 gi|15074724|emb|CAC46369.1| Hypothetical tRNA/rRNA methyltransferase [Sinorhizobium meliloti
           1021]
 gi|306895850|gb|EFN26602.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           AK83]
 gi|306903027|gb|EFN33618.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           BL225C]
          Length = 276

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 130/258 (50%), Positives = 185/258 (71%), Gaps = 2/258 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +GP IIL  PQLGENIGMVARAM NF L++LRLV+PRDGWPSEKARS+++ AD VID  +
Sbjct: 13  EGPAIILAFPQLGENIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAK 72

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++  L+EA+ADL+F+YATTAR+R+ FK V +P  AA  L  R   G+ VGIIFGRER GL
Sbjct: 73  LYETLEEALADLNFVYATTARDRDGFKPVRSPIVAARELRHRFKEGEKVGIIFGRERTGL 132

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKG 190
           TN E+AL++ I++FPVNP F SLN++QAVLLM +E ++  + S ++      Q  PATK 
Sbjct: 133 TNAEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWLKTGMTSEDETSFQASQQRPATKE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L    ++LE +L+ R YFR  +KK K++++L ++  RP     E+ +LRG++S+LD+F+
Sbjct: 193 QLHGLCEHLEEALDARNYFRSADKKPKLVENLRAVLTRPSFTESEIQVLRGVISSLDRFT 252

Query: 251 RQSSRRNNVLLQKTEKSE 268
           R++ R +      + K +
Sbjct: 253 RENPRGSAAPPGHSRKEQ 270


>gi|170723500|ref|YP_001751188.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169761503|gb|ACA74819.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           W619]
          Length = 251

 Score =  319 bits (819), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 132/249 (53%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  LT+L LV P++ +P+  A + ++ AD V+   
Sbjct: 2   LQNIRVVLVNTSHPGNIGGAARAMKNMGLTRLVLVQPKE-FPAADASARASGADDVLAGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V  +L++A+     +  T+AR R+    ++ P+E      E    G+ + ++FGRE  G
Sbjct: 61  QVVDSLEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVEHAVGGEEIALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  +  P NP F SLN++ AV ++ +E     + +     K    + +  A
Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAEGTAQKVEKADASELA 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F ++LE +L + G+  P EK K ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 181 TMDEMELFYEHLEKTLVDIGFLDP-EKPKHLMARLRRLYGRSSVERPEMSILRGILTETQ 239

Query: 248 KFSRQSSRR 256
           K +R    +
Sbjct: 240 KVARGEPHK 248


>gi|268593202|ref|ZP_06127423.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rettgeri DSM 1131]
 gi|291311250|gb|EFE51703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rettgeri DSM 1131]
          Length = 243

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 7/245 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    L+ L LVNP    P   + + SA A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVE-PDSHSIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+     +  T+AR+R     ++ P+E  +   E+      V I+FGRER G
Sbjct: 61  TIVKTLDEALEGCKLVIGTSARSRTLSWPMVEPRECGVKSVEQSKE-SPVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----VKEQNTPA 187
           LTNEE+      +  P NP + SLN++ AV L+ +E     +  +EKN      ++    
Sbjct: 120 LTNEELQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLSMNEKNTVISADDEVEYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              ++  F  +LE  L E G+ R       +++ L  +F R  +  +E+ +LRGI+++++
Sbjct: 180 PSEDVERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLFTRAHIETQELHILRGILTSME 238

Query: 248 KFSRQ 252
           K++++
Sbjct: 239 KWAKK 243


>gi|152971395|ref|YP_001336504.1| tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895989|ref|YP_002920725.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330007729|ref|ZP_08306055.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
 gi|166234837|sp|A6TCF3|TRMJ_KLEP7 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|150956244|gb|ABR78274.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548307|dbj|BAH64658.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328535342|gb|EGF61825.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
          Length = 244

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 7/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAE-GQHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E+       E+    
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEQAQPAVEHEEAPYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F D+LE +L   G+ RP     ++++ L  +F R     +E+ +LRG++++++
Sbjct: 180 LVDDLERFYDHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIE 238

Query: 248 KFSR 251
           + ++
Sbjct: 239 QQNK 242


>gi|251788732|ref|YP_003003453.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
 gi|247537353|gb|ACT05974.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
          Length = 249

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 5/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G  ARAM    LT L LVNP    P  +A S SA A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L +A+     +  T+AR+R     +L P+E  +   +       V I+FGRER G
Sbjct: 61  TIVDTLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSIQEAQR-APVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV ++ +E     + S ++     E++     
Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDSQQQGEPAHEESPYPLA 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L   G+ R   +  ++++ L  +F R     +E+ +LRGI+S + K 
Sbjct: 180 DDLERFYQHLEETLLHTGFIRQAHQ-GQVMNKLRRLFTRARPENQELNILRGILSAITKT 238

Query: 250 SRQSSRRNN 258
           +  + +  +
Sbjct: 239 ASSTDKPQD 247


>gi|330957512|gb|EGH57772.1| RNA methyltransferase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 254

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 132/251 (52%), Gaps = 8/251 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L +L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ A   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRGAGEKVIEQAGEGAEVALVFGREHSG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     +  SE+    +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRMAWLAVSERGEAPKTASAHSAE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT  E+  F  +LE +L + G+  P EK + ++  L  +F R E+ R E+ +LRG+++ 
Sbjct: 181 LATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTE 239

Query: 246 LDKFSRQSSRR 256
             K +R    +
Sbjct: 240 TQKVARGEPYK 250


>gi|261345350|ref|ZP_05972994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rustigianii DSM 4541]
 gi|282566393|gb|EFB71928.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rustigianii DSM 4541]
          Length = 243

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    L+ L LVNP    P   A + SA A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVE-PDSHAIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ ++L EA+     +  T+AR+R     ++ P+E  +   ++      V IIFGRER G
Sbjct: 61  KIVTSLDEALEGCKLVIGTSARSRTLPWPMVEPRECGVKSVQQSNE-SPVAIIFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   N  +  P NP + SLN++ AV L+ +E     +  +EKN +    ++    
Sbjct: 120 LTNEELQKCNYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLAINEKNTQKSAVDEVEYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  +LE  L E G+ R       +++ L  +F R  +  +E+ +LRGI+++++
Sbjct: 180 PAEDLERFYVHLETVLNESGFIRKAH-PGLIMNKLRRLFTRAHVETQELHILRGILTSME 238

Query: 248 KFSRQ 252
           K++++
Sbjct: 239 KWAKK 243


>gi|319784058|ref|YP_004143534.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169946|gb|ADV13484.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 304

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 134/249 (53%), Positives = 175/249 (70%), Gaps = 2/249 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP IILV+PQLGENIGMVARAM NF L++LRLVNPRDGWPSEKAR++++ AD VID+V V
Sbjct: 14  GPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDAVTV 73

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L  A+ADL+F++ATTAR R+ FKSV  P EA  +L  R   GQ  GI+FGRER+GL 
Sbjct: 74  FDDLASALADLNFVFATTARQRDGFKSVRGPVEAGRLLRARHAMGQRTGILFGRERFGLY 133

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGE 191
           N+E+ L++ I++FPV+P F SLNI+QA LLM +E M++ +    K         PA+K E
Sbjct: 134 NDEVGLADEIVTFPVDPDFSSLNIAQAALLMSYEWMKSGLEDETKTNFSGPDMKPASKEE 193

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L     YLE +LE RGYFRP  KK KM+D+L ++  R      E+ +LRGI+S+LD+FS 
Sbjct: 194 LHGLFAYLEGALEARGYFRPAPKKPKMIDNLRAVLTRAGFAEPELKVLRGIISSLDRFSP 253

Query: 252 QSSRRNNVL 260
              R +   
Sbjct: 254 AMPRGDGSP 262


>gi|296104218|ref|YP_003614364.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058677|gb|ADF63415.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 241

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 126/243 (51%), Gaps = 5/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAEQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + EK    KE+      
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQEKVAEPKEETAYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++ 
Sbjct: 180 DDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQK 238

Query: 250 SRQ 252
           +++
Sbjct: 239 NKE 241


>gi|3046324|gb|AAC24483.1| unknown [Azotobacter vinelandii]
          Length = 257

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 11/249 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV P + +PS +A + ++ A  ++D+ 
Sbjct: 2   LQSIRVVLVNTSHPGNIGGAARAMRNMGLSRLYLVAP-EDFPSSEAVARASGATDILDNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+        T+AR+R     +L P+E A    E++  G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183
           LTNEE+      +  P +P F SLN++ AV ++V+E     + +     K++        
Sbjct: 121 LTNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAML 180

Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            + PAT  EL  F  +LE +L E G+  P EK + ++  L  ++ R  + + E+ +LRGI
Sbjct: 181 NSQPATMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGI 239

Query: 243 VSTLDKFSR 251
           ++   K +R
Sbjct: 240 LTETQKAAR 248


>gi|253689402|ref|YP_003018592.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755980|gb|ACT14056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 241

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 125/241 (51%), Gaps = 5/241 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  +A+     +  T+AR+R     +L P+E  +   +       V ++FGRER G
Sbjct: 61  TIVDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSAQEA-EHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTN+E+   +  ++ P NP + SLN++ AV ++ +E     +  + + +   E++     
Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPQHEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L + G+ RP  +  ++++ L  +F R     +E+ +LRGI+S++ K 
Sbjct: 180 DDLERFYQHLEQTLLQTGFIRPAHQ-GQVMNKLRRLFTRARPEAQELNILRGILSSVQKT 238

Query: 250 S 250
            
Sbjct: 239 H 239


>gi|226946081|ref|YP_002801154.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
 gi|226721008|gb|ACO80179.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
          Length = 258

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 134/249 (53%), Gaps = 11/249 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV P + +PS +A + ++ A  ++D+ 
Sbjct: 3   LQSIRVVLVNTSHPGNIGGAARAMRNMGLSRLYLVAP-EDFPSSEAVARASGATDILDNA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+        T+AR+R     +L P+E A    E++  G  V ++FGRE  G
Sbjct: 62  QVVATLEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183
           LTNEE+      +  P +P F SLN++ AV ++V+E     + +     K++        
Sbjct: 122 LTNEELQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVRMAWLAAEGVPSKQEKLETTAML 181

Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            + PAT  EL  F  +LE +L E G+  P EK + ++  L  ++ R  + + E+ +LRGI
Sbjct: 182 NSQPATMDELELFYGHLESTLVEIGFLDP-EKPRHLMSRLRRLYGRGGISKLEMNILRGI 240

Query: 243 VSTLDKFSR 251
           ++   K +R
Sbjct: 241 LTETQKAAR 249


>gi|332532349|ref|ZP_08408229.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038216|gb|EGI74662.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 241

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 4/239 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV+     NIG  ARAM    L++L LV+P     S +A + +A A  V+ +  + 
Sbjct: 6   IRIVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDS-QASALAAGATDVLGNAVIV 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             ++EAIAD      T+AR+R     ++ P+E    L     +G  V ++FGRE  GLTN
Sbjct: 65  GTVEEAIADCTLTIGTSARSRTLSWPMVEPRECGEKLVAEAVNG-PVALVFGRENSGLTN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELL 193
           EE+ L N  +  P NP + SLN++ AV  + +E     +    K V+E +    +  +  
Sbjct: 124 EELQLCNYHVCIPANPEYSSLNLAMAVQTLSYETRMAFLNQQPKKVEEDDAVYPSSKQTE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            F ++LE +L + G+    +    ++  L  +F R      E+ +LRGI+++++K   +
Sbjct: 184 LFYEHLEETLFKTGFIIK-QHPGLVMTKLRRLFNRAHPEDAEMNILRGILTSINKSIPK 241


>gi|237732512|ref|ZP_04562993.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
 gi|226908051|gb|EEH93969.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
          Length = 243

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI S 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +       +   V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEA-TNSPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + + E +     E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQESDKTIDYEEAEYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|315125525|ref|YP_004067528.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315014038|gb|ADT67376.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 241

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 5/239 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV+     NIG  ARAM    L++L LV+P     S  A + +A A  V+ +  + 
Sbjct: 6   IRIVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDS-HASALAAGATDVLGNAVIV 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ +AIAD      T+AR+R     ++ P+E    L     +G  V ++FGRE  GLTN
Sbjct: 65  DSVADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVGEAVNG-PVALVFGRENSGLTN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT--PATKGEL 192
           EE+ L N  +  P NP + SLN++ AV  + +E     +    K V+E++     +  + 
Sbjct: 124 EELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKAVQEEDDTLYPSSKQT 183

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             F ++LE +L + G+    +    ++  L  +F R      E+ +LRGI+++++K  +
Sbjct: 184 ELFYEHLEDTLFKTGFIIK-QHPGMVMTKLRRLFNRARPEDAEMNILRGILTSINKSIK 241


>gi|227822189|ref|YP_002826160.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
 gi|227341189|gb|ACP25407.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
          Length = 275

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 129/255 (50%), Positives = 188/255 (73%), Gaps = 2/255 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +GP IIL  PQLGENIGMVARAM NF L++LRLVNPRDGWP+EKARS+++ AD VID  +
Sbjct: 13  EGPAIILAYPQLGENIGMVARAMANFGLSELRLVNPRDGWPNEKARSAASRADHVIDGAK 72

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++++L+EAIADL+F+YATTAR+R+ +K V +P  AA  L +R   G+ +GIIFGRER GL
Sbjct: 73  LYNSLEEAIADLNFVYATTARDRDGYKPVRSPIVAARTLRQRFKVGEAIGIIFGRERTGL 132

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKG 190
           TNEE+AL++ I++FPVNP F SLN++QAVLLM +E M+  + S ++   +  +  PATK 
Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNLAQAVLLMSYEWMKTGMESEDQTSFQAIEQRPATKE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            L    D+LE +L+ R YFR  +K+ K++++L ++  RP     E+ +LRG++S+LD+F+
Sbjct: 193 HLQGLFDHLEDALDARNYFRSADKRPKLVENLRAVLTRPSFSESEIQVLRGVISSLDRFT 252

Query: 251 RQSSRRNNVLLQKTE 265
           R++ R +    +  +
Sbjct: 253 RENPRGSGAPARSRK 267


>gi|148359291|ref|YP_001250498.1| RNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296107338|ref|YP_003619038.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|148281064|gb|ABQ55152.1| RNA methyltransferase [Legionella pneumophila str. Corby]
 gi|295649239|gb|ADG25086.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610445|emb|CBX00016.1| hypothetical protein LPW_17721 [Legionella pneumophila 130b]
          Length = 257

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    L+ L LVNP+  +P  KA+  +A AD V+D+ 
Sbjct: 3   LSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V + L EA+     I  T+AR R      L P   A ++N++      V I+FGRE  G
Sbjct: 62  VVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQ-SDNTQVAIVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+   +  I+ P NP + SLN++QAV ++ +E     +  S +       PAT  E
Sbjct: 121 LTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADE 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK--- 248
           +  F ++L+    E  + +P    ++++  +  +F R  L + EV +LRG++S + K   
Sbjct: 181 IEQFYEHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLE 239

Query: 249 FSRQSSRRN 257
           ++R+ +R N
Sbjct: 240 WARKDNRSN 248


>gi|262040271|ref|ZP_06013522.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042380|gb|EEW43400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 244

 Score =  318 bits (816), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 7/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAE-GQHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E+       E+    
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEQAQPAVEHEEAPYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F D+LE +L   G+ RP     ++++ L  +F R     +E+ +LRG++++++
Sbjct: 180 LVDDLERFYDHLEQTLLATGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIE 238

Query: 248 KFSR 251
           + ++
Sbjct: 239 QQNK 242


>gi|56461142|ref|YP_156423.1| rRNA methyltransferase [Idiomarina loihiensis L2TR]
 gi|56180152|gb|AAV82874.1| rRNA methyltransferase, TrmH family [Idiomarina loihiensis L2TR]
          Length = 240

 Score =  318 bits (815), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 3/237 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     NIG VARAM    L++L LV+P    P   A + +A A  ++ S 
Sbjct: 2   LDNIRIVLVNTSHTGNIGSVARAMKTMGLSKLTLVDPVQE-PDSHASALAAGATDILASA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L+EAIAD   + AT+ARNR     +L P+E A  + E     Q V ++FGRE  G
Sbjct: 61  TIVDTLQEAIADCGLVIATSARNRTLDWPLLGPRECAAKVLEETSQHQ-VALVFGRENSG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+  S   +  P NP + SLN++ AV  + +E     + S ++  +         +
Sbjct: 120 LTNEELQQSQFHLHIPTNPDYSSLNLAMAVQTVSYELRMQWLESKQRAPENLPEYPRAED 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F ++LE +L + G+  P +   +++  L  +F R      E+ +LRGI++++DK
Sbjct: 180 LERFYEHLEKTLGQTGFIVP-QHPGQVMTKLRRLFNRARPEENEINILRGILASVDK 235


>gi|16761459|ref|NP_457076.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765865|ref|NP_461480.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140844|ref|NP_804186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56412577|ref|YP_149652.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161612690|ref|YP_001586655.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167549427|ref|ZP_02343186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992671|ref|ZP_02573767.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168232119|ref|ZP_02657177.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168243330|ref|ZP_02668262.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261412|ref|ZP_02683385.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466698|ref|ZP_02700552.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168821474|ref|ZP_02833474.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194448527|ref|YP_002046606.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194470101|ref|ZP_03076085.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197249941|ref|YP_002147500.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263679|ref|ZP_03163753.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197361512|ref|YP_002141148.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200387870|ref|ZP_03214482.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929589|ref|ZP_03220663.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353644|ref|YP_002227445.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857953|ref|YP_002244604.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213425309|ref|ZP_03358059.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213646423|ref|ZP_03376476.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855575|ref|ZP_03383815.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238912666|ref|ZP_04656503.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825401|ref|ZP_06544638.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|54040206|sp|P66975|TRMJ_SALTI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|54042610|sp|P66974|TRMJ_SALTY RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|81362035|sp|Q5PNG3|TRMJ_SALPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|25304297|pir||AH0824 probable RNA methyltransferase STY2791 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421090|gb|AAL21439.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503759|emb|CAD02748.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136469|gb|AAO68035.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126834|gb|AAV76340.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161362054|gb|ABX65822.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406831|gb|ACF67050.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456465|gb|EDX45304.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195630820|gb|EDX49412.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197092988|emb|CAR58420.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213644|gb|ACH51041.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241934|gb|EDY24554.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|199604968|gb|EDZ03513.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321308|gb|EDZ06508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273425|emb|CAR38400.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325485|gb|EDZ13324.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329145|gb|EDZ15909.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333625|gb|EDZ20389.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205337632|gb|EDZ24396.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341947|gb|EDZ28711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349568|gb|EDZ36199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709756|emb|CAR34108.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247741|emb|CBG25569.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994667|gb|ACY89552.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159094|emb|CBW18608.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913534|dbj|BAJ37508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087043|emb|CBY96812.1| putative ATP synthase beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222750|gb|EFX47821.1| tRNA:Cm32/Um32 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613315|gb|EFY10257.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620481|gb|EFY17346.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625051|gb|EFY21880.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629505|gb|EFY26281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633892|gb|EFY30631.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635498|gb|EFY32209.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639826|gb|EFY36505.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644288|gb|EFY40832.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322652255|gb|EFY48612.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654837|gb|EFY51154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658235|gb|EFY54501.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661694|gb|EFY57912.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669674|gb|EFY65820.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673319|gb|EFY69424.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674892|gb|EFY70979.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682915|gb|EFY78933.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685576|gb|EFY81571.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130875|gb|ADX18305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194687|gb|EFZ79877.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200371|gb|EFZ85452.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201271|gb|EFZ86338.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208341|gb|EFZ93281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211583|gb|EFZ96421.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216015|gb|EGA00747.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221912|gb|EGA06306.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225597|gb|EGA09824.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229314|gb|EGA13438.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235371|gb|EGA19455.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237443|gb|EGA21506.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245198|gb|EGA29199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248772|gb|EGA32699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254048|gb|EGA37869.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323254913|gb|EGA38705.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262018|gb|EGA45583.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267802|gb|EGA51283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269639|gb|EGA53091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326628746|gb|EGE35089.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989472|gb|AEF08455.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 243

 Score =  318 bits (815), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E       E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|117618072|ref|YP_856281.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559479|gb|ABK36427.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 241

 Score =  318 bits (815), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 4/242 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    L+Q+ LV+P+   P + A + +A A  ++ + 
Sbjct: 2   LDQIRIVLVNTSHTGNMGSAARAMKTMGLSQMVLVDPQ-AQPDDNAYALAAGASDLLANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R+ S L EAIAD   +  T+AR+R     +L P+EA   L         V ++FGRER G
Sbjct: 61  RIVSTLDEAIADCGLVIGTSARSRTLSWPMLDPREAGEKLVTEGMQ-HPVALVFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKG 190
           LTN+E+   +  ++ P NP + SLN++ AV  + +E   + +   +           +  
Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQTLCYEVRMHWLQQEQVGETDMAVDYPSAE 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L  F  +LE +L + G+    +   +++  L  +F R      E+ +LRGI++++ K  
Sbjct: 180 QLEGFYQHLEQTLLKTGFI-ADDHPGQVMSKLRRLFNRARPEAVELNILRGILTSVQKPR 238

Query: 251 RQ 252
            Q
Sbjct: 239 PQ 240


>gi|88858499|ref|ZP_01133141.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Pseudoalteromonas tunicata D2]
 gi|88820116|gb|EAR29929.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Pseudoalteromonas tunicata D2]
          Length = 249

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 4/247 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV+     NIG VARAM    L++L LV+P +   S  A + +A A  V+ + 
Sbjct: 3   LNDIRVVLVNTSHTGNIGSVARAMKTMGLSKLYLVDPVNQIDS-HASALAAGATDVLGNA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  +L +AIAD   +  T+AR+R     ++ P+E   +L +    G  V ++FGRE  G
Sbjct: 62  VVVDDLAQAIADCSLVIGTSARSRTLSWPMVEPRECGQMLVDGAKKG-PVALVFGRENSG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKG 190
           L+NEE+ + +  +  P NP + SLN++ AV  + +E     +   EK V+ ++    +  
Sbjct: 121 LSNEELQMCHYHVCIPANPEYSSLNLAMAVQTLTYEVRMAFLQQQEKKVEVDETVYPSSQ 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L  F  +L+ +LE  G+    +    ++  L  +F R      E+ +LRGI++++DK  
Sbjct: 181 QLELFYQHLQNTLENTGFIIK-QHPGLVMTKLRRLFNRARPEDGELNILRGILTSVDKLD 239

Query: 251 RQSSRRN 257
            Q+++ N
Sbjct: 240 SQATKNN 246


>gi|168238284|ref|ZP_02663342.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736797|ref|YP_002115608.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712299|gb|ACF91520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288817|gb|EDY28190.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 243

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E       E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ESHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|52841974|ref|YP_095773.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629085|gb|AAU27826.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 257

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    L+ L LVNP+  +P  KA+  +A AD V+D+ 
Sbjct: 3   LSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V + L EA+     I  T+AR R      L P   A ++N++  + Q V I+FGRE  G
Sbjct: 62  VVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSGNTQ-VAIVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+   +  I+ P NP + SLN++QAV ++ +E     +  S +       PAT  E
Sbjct: 121 LTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADE 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK--- 248
           +  F ++L+    E  + +P    ++++  +  +F R  L + EV +LRG++S + K   
Sbjct: 181 IEQFYEHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLE 239

Query: 249 FSRQSSRRN 257
           ++R+ +R +
Sbjct: 240 WARKDNRSD 248


>gi|254502928|ref|ZP_05115079.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
           DFL-11]
 gi|222438999|gb|EEE45678.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
           DFL-11]
          Length = 270

 Score =  318 bits (815), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 120/257 (46%), Positives = 176/257 (68%), Gaps = 4/257 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+ P +IL +PQLGENIG  ARAM NF L  LR+VNPRDGWPSEKAR++++ AD VID 
Sbjct: 15  TARPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARAAASRADHVIDK 74

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+VF   + AIADL+F+YATTAR+R   K V  P EAA+   +       VG +FGRERW
Sbjct: 75  VQVFETTEAAIADLNFVYATTARSREVPKPVRGPDEAAVKAVDLGERQHGVGYLFGRERW 134

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPAT 188
           GL NEE+AL++ I++ PV+P F SLNI+QAVL+  +E  + +       +  +E++ PA+
Sbjct: 135 GLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTASKGELPFLLSEEEHPPAS 194

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K ++L   ++LE SL+E  +FRP E++  M+ +L +IF + EL ++EV  LRG+++ L++
Sbjct: 195 KDDILRMFEHLESSLDEVSFFRPPERRPHMVRNLRNIFQKAELSQQEVRTLRGVIAALER 254

Query: 249 FSRQSSRRNNVLLQKTE 265
             R++  R    + +TE
Sbjct: 255 --RETRPRKTGDVDETE 269


>gi|170019185|ref|YP_001724139.1| RNA methyltransferase [Escherichia coli ATCC 8739]
 gi|312973224|ref|ZP_07787396.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1827-70]
 gi|169754113|gb|ACA76812.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
           8739]
 gi|310331819|gb|EFP99054.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1827-70]
 gi|323941206|gb|EGB37391.1| RNA methyltransferase [Escherichia coli E482]
          Length = 246

 Score =  317 bits (814), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|226328027|ref|ZP_03803545.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
 gi|225203731|gb|EEG86085.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
          Length = 252

 Score =  317 bits (814), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 6/247 (2%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++  +   IILV+     N+G  ARAM    LT L  VNP++  P   + + SA A  VI
Sbjct: 9   KSMLENIRIILVETSHTGNMGSTARAMKTMGLTNLYFVNPKEK-PDSHSIALSAGASDVI 67

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  + +++ EAI     +  T+AR+R     +LAP+E            + V IIFGRE
Sbjct: 68  GNAHIVNSIDEAIEGCGLVIGTSARSRTLSWPMLAPRECGERCV-MEAKHKPVAIIFGRE 126

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNT 185
           R GLTNEE+   +  +  P NP + SLN++ AV L+ +E    ++   EK   N   +  
Sbjct: 127 RTGLTNEELQKCDFHLYVPTNPEYGSLNLAMAVQLVSYEIRMAALAQEEKQEENSPSEID 186

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                ++  F  +LE  L E G+ RP     +++  L  +F R     +E+ +LRGI+++
Sbjct: 187 YPPADDIERFYVHLEQVLNESGFIRPKH-PGQVMSRLRRLFTRARPETQELHILRGILTS 245

Query: 246 LDKFSRQ 252
           ++K++++
Sbjct: 246 VEKWAKK 252


>gi|283786147|ref|YP_003366012.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282949601|emb|CBG89220.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 244

 Score =  317 bits (814), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 6/246 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L +A+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E       E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENPDAAAHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRG+++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGMLASIEQ 238

Query: 249 FSRQSS 254
             ++  
Sbjct: 239 LKKEKP 244


>gi|50122161|ref|YP_051328.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644316|sp|Q6D257|TRMJ_ERWCT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|49612687|emb|CAG76137.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 241

 Score =  317 bits (814), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 5/241 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G VARAM    L++L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +L +A+   + +  T+AR+R     +L P+E  +   +       V ++FGRER G
Sbjct: 61  TLVDSLDQALEGCNLVVGTSARSRTLPWPMLEPRECGVRSAQEA-EHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTN+E+   +  ++ P NP + SLN++ AV ++ +E     +  + + +   E++     
Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRIAHLDRLQAGQPEHEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L + G+ RP  +  ++++ L  +F R     +E+ +LRGI+S++ K 
Sbjct: 180 DDLERFYQHLEQTLLQTGFIRPAHQ-GQVMNKLRRLFTRARPEAQELNILRGILSSVQKT 238

Query: 250 S 250
            
Sbjct: 239 H 239


>gi|28868627|ref|NP_791246.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851865|gb|AAO54941.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331019394|gb|EGH99450.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 257

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  LT+L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +S +  + +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQADEGETPKVASAH 180

Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L   G+  P EK + ++  L  +F R E+ R E+ +LRG+
Sbjct: 181 NAELATMDEMEGFYGHLETTLVNIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPYK 253


>gi|260869221|ref|YP_003235623.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257765577|dbj|BAI37072.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|323177343|gb|EFZ62931.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1180]
          Length = 245

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFSRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|127513248|ref|YP_001094445.1| RNA methyltransferase [Shewanella loihica PV-4]
 gi|126638543|gb|ABO24186.1| RNA methyltransferase, TrmH family, group 1 [Shewanella loihica
           PV-4]
          Length = 252

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 4/255 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  P+   P  ++ + +A A  ++   
Sbjct: 2   LSNIRVVLVGTTHPGNIGSTARAMKTMGLSTLYLAEPKVA-PDGQSVALAAGASDILKHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L++AIAD   + AT+AR+R     +L P++A   L     +G  V I+FGRE  G
Sbjct: 61  VTVDCLEDAIADCSLVIATSARSRTLDWPMLDPRQAGEKLAGAAVNG-PVAIVFGRESNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+N+E+   N  ++ P NP + SLN++QAV ++ +E     +    + V+EQ  P  K +
Sbjct: 120 LSNDELQKCNYHVTIPANPEYTSLNLAQAVQIICYEARVAHLAMDPETVEEQAYPLAKEQ 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             +F  +LE +L   G+    +   +++  L  +F R  +  +E+ +LRGI++++DK   
Sbjct: 180 -ENFFVHLEKTLLSTGFIIK-QHPGQVMTKLRRLFSRARIESQEMNILRGILTSVDKKVE 237

Query: 252 QSSRRNNVLLQKTEK 266
            + +         E+
Sbjct: 238 LAQQATQDAQSTKEE 252


>gi|156932916|ref|YP_001436832.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
 gi|166234836|sp|A7MGX5|TRMJ_ENTS8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|156531170|gb|ABU75996.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
          Length = 245

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +       +   V I+FGRER G
Sbjct: 61  SIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEA-THAPVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + S +        E+    
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLASQDAQTPAPGEEETPYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  +LE  L   G+ RP     ++++ L  +F R     +E+ +LRG++++++
Sbjct: 180 LVDDLERFYGHLEQVLLSTGFIRPNH-PGQVMNKLRRLFTRARPESQELNILRGMLASIE 238

Query: 248 KFSRQSS 254
               +  
Sbjct: 239 SSRNEKP 245


>gi|54297660|ref|YP_124029.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
 gi|53751445|emb|CAH12863.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
          Length = 257

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    L+ L LVNP+  +P  KA+  +A AD V+D+ 
Sbjct: 3   LSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAKEMAAGADDVLDAA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V + L EA+     I  T+AR R      L P   A ++N++      V I+FGRE  G
Sbjct: 62  VVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQ-SDNTQVAIVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+   +  I+ P NP + SLN++QAV ++ +E     +  S +       PAT  E
Sbjct: 121 LTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADE 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK--- 248
           +  F ++L+    E  + +P    ++++  +  +F R  L + EV +LRG++S + K   
Sbjct: 181 IEQFYEHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLE 239

Query: 249 FSRQSSRRN 257
           ++R+ +R N
Sbjct: 240 WARKDNRSN 248


>gi|15803059|ref|NP_289089.1| putative ATP synthase beta subunit [Escherichia coli O157:H7
           EDL933]
 gi|15832652|ref|NP_311425.1| ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai]
 gi|74313058|ref|YP_311477.1| putative ATP synthase subunit beta [Shigella sonnei Ss046]
 gi|82777915|ref|YP_404264.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
 gi|157158953|ref|YP_001463855.1| RNA methyltransferase [Escherichia coli E24377A]
 gi|168748403|ref|ZP_02773425.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757811|ref|ZP_02782818.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761148|ref|ZP_02786155.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768631|ref|ZP_02793638.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773547|ref|ZP_02798554.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778504|ref|ZP_02803511.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787884|ref|ZP_02812891.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|168798909|ref|ZP_02823916.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|191169250|ref|ZP_03031002.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|193068368|ref|ZP_03049331.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|195936678|ref|ZP_03082060.1| methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208808795|ref|ZP_03251132.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814295|ref|ZP_03255624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819499|ref|ZP_03259819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397596|ref|YP_002272007.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920010|ref|YP_002294094.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217326776|ref|ZP_03442859.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555057|ref|YP_002387970.1| putative methyltransferase [Escherichia coli IAI1]
 gi|254794482|ref|YP_003079319.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017319|ref|ZP_05431184.1| predicted methyltransferase [Shigella sp. D9]
 gi|261223032|ref|ZP_05937313.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259417|ref|ZP_05951950.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283757|ref|YP_003500575.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli O55:H7 str. CB9615]
 gi|293446886|ref|ZP_06663308.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|300817697|ref|ZP_07097912.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300820797|ref|ZP_07100947.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|300927098|ref|ZP_07142849.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|301330369|ref|ZP_07223016.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|309794420|ref|ZP_07688843.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|331669280|ref|ZP_08370128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA271]
 gi|331678525|ref|ZP_08379200.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H591]
 gi|332278314|ref|ZP_08390727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
           D9]
 gi|20178206|sp|Q8XA83|TRMJ_ECO57 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123561907|sp|Q32D32|TRMJ_SHIDS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123616509|sp|Q3YZ20|TRMJ_SHISS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|12516936|gb|AAG57646.1|AE005483_5 putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362869|dbj|BAB36821.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|73856535|gb|AAZ89242.1| putative ATP synthase beta subunit [Shigella sonnei Ss046]
 gi|81242063|gb|ABB62773.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
 gi|157080983|gb|ABV20691.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E24377A]
 gi|187770559|gb|EDU34403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017081|gb|EDU55203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003494|gb|EDU72480.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355295|gb|EDU73714.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362206|gb|EDU80625.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368377|gb|EDU86793.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372329|gb|EDU90745.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|189378640|gb|EDU97056.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|190900703|gb|EDV60500.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|192958320|gb|EDV88760.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|208728596|gb|EDZ78197.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735572|gb|EDZ84259.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739622|gb|EDZ87304.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158996|gb|ACI36429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209763218|gb|ACI79921.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763220|gb|ACI79922.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763222|gb|ACI79923.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763224|gb|ACI79924.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763226|gb|ACI79925.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209913269|dbj|BAG78343.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217319143|gb|EEC27568.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218361825|emb|CAQ99423.1| putative methyltransferase [Escherichia coli IAI1]
 gi|254593882|gb|ACT73243.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763630|gb|ADD57591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli O55:H7 str. CB9615]
 gi|291323716|gb|EFE63144.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|300416917|gb|EFK00228.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|300526550|gb|EFK47619.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|300529685|gb|EFK50747.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300843703|gb|EFK71463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|308121876|gb|EFO59138.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|320188871|gb|EFW63530.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320200096|gb|EFW74685.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli EC4100B]
 gi|320640881|gb|EFX10369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H7 str. G5101]
 gi|320646323|gb|EFX15250.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H- str. 493-89]
 gi|320651503|gb|EFX19890.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H- str. H 2687]
 gi|320657214|gb|EFX25023.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320662820|gb|EFX30152.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667624|gb|EFX34539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323169391|gb|EFZ55067.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella sonnei 53G]
 gi|323944589|gb|EGB40657.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019987|gb|EGB89206.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           117-3]
 gi|326340336|gb|EGD64140.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326345020|gb|EGD68764.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           1044]
 gi|331064474|gb|EGI36385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA271]
 gi|331074985|gb|EGI46305.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H591]
 gi|332087983|gb|EGI93108.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella boydii 5216-82]
 gi|332100666|gb|EGJ04012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
           D9]
          Length = 245

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|325272151|ref|ZP_08138582.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324102714|gb|EGC00130.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 251

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG  ARAM N  L++L LV P++ +P+  A + ++ AD V+ + 
Sbjct: 2   LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKE-FPAVDASARASGADDVLGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V  +L++A+   + +  T+AR R+    ++ P+E           G+ + ++FGRE  G
Sbjct: 61  QVVDSLEQALVGCNLVMGTSARERSIPWPLIGPRECGEKAVVHASGGEEIALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  +  P NP F SLN++ AV ++ +E     + +     +    + +  A
Sbjct: 121 LTNEELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVRMAWLAAGVAPAQVEKVDASELA 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F D+LE +L   G+  P  K K ++  L  ++ R  + R E+ +LRGI++   
Sbjct: 181 TMDEMELFYDHLEKTLVGIGFLDPA-KPKHLMPRLRRLYGRVAVERSEMSILRGILTETQ 239

Query: 248 KFSRQSSRR 256
           K  R    +
Sbjct: 240 KVVRGEPHK 248


>gi|309784714|ref|ZP_07679347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 1617]
 gi|308927084|gb|EFP72558.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 1617]
          Length = 245

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVT-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|289626167|ref|ZP_06459121.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649074|ref|ZP_06480417.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330869591|gb|EGH04300.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 257

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 134/254 (52%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++S 
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILESA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L++A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  KVVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +S  + + +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAH 180

Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+
Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPYK 253


>gi|54294634|ref|YP_127049.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
 gi|53754466|emb|CAH15950.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
          Length = 257

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 6/249 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    L+ L LVNP+  +P  KAR  +A AD V+D+ 
Sbjct: 3   LSSIRIVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPK-SFPDLKAREMAAGADDVLDAA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V + L EA+     I  T+AR R      L P   A ++N++      V I+FGRE  G
Sbjct: 62  VVTNTLDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQ-SDNTQVAIVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+   +  I+ P NP + SLN++QAV ++ +E     +  S +       PAT  E
Sbjct: 121 LTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLSPSAQVALRNEEPATADE 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK--- 248
           +  F ++L+    E  + +P    ++++  +  +F R  L + EV +LRG++S + K   
Sbjct: 181 IEQFYEHLKEVFIEINFLKP-SNPRRLMQRVRRLFNRINLEKMEVSILRGMLSQVQKSLE 239

Query: 249 FSRQSSRRN 257
           ++R+ +R +
Sbjct: 240 WARKDNRSD 248


>gi|300958833|ref|ZP_07170944.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|300314518|gb|EFJ64302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
          Length = 246

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIREKH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|311278537|ref|YP_003940768.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
 gi|308747732|gb|ADO47484.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
          Length = 242

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 6/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L +A+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEA-EHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188
           LTN+E+   N  ++   NP + SLN++ AV ++ +E     + + E   K   E+     
Sbjct: 120 LTNDELQKCNYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQENGDKAEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSRQ 252
            +++
Sbjct: 239 KNKE 242


>gi|194442269|ref|YP_002041807.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194400932|gb|ACF61154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 243

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E       E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEAPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|110642697|ref|YP_670427.1| tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536]
 gi|191172639|ref|ZP_03034178.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|300998261|ref|ZP_07181949.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|123147823|sp|Q0TEV3|TRMJ_ECOL5 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|110344289|gb|ABG70526.1| hypothetical tRNA/rRNA methyltransferase YfhQ [Escherichia coli
           536]
 gi|190907112|gb|EDV66712.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|300304033|gb|EFJ58553.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|324011236|gb|EGB80455.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           60-1]
          Length = 246

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPILDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|16130457|ref|NP_417027.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113861|ref|NP_708371.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
 gi|26248900|ref|NP_754940.1| putative tRNA/rRNA methyltransferase YfhQ [Escherichia coli CFT073]
 gi|30063922|ref|NP_838093.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|82544981|ref|YP_408928.1| ATP synthase beta subunit [Shigella boydii Sb227]
 gi|89109338|ref|AP_003118.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91211859|ref|YP_541845.1| putative ATP synthase subunit beta [Escherichia coli UTI89]
 gi|110806463|ref|YP_689983.1| putative ATP synthase subunit beta [Shigella flexneri 5 str. 8401]
 gi|117624760|ref|YP_853673.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|157162008|ref|YP_001459326.1| RNA methyltransferase [Escherichia coli HS]
 gi|170082142|ref|YP_001731462.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683683|ref|YP_001744721.1| RNA methyltransferase [Escherichia coli SMS-3-5]
 gi|187732283|ref|YP_001881323.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|188493660|ref|ZP_03000930.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|193064014|ref|ZP_03045099.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194427269|ref|ZP_03059819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|194437647|ref|ZP_03069743.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|215487882|ref|YP_002330313.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559458|ref|YP_002392371.1| methyltransferase [Escherichia coli S88]
 gi|218690652|ref|YP_002398864.1| putative methyltransferase [Escherichia coli ED1a]
 gi|218696159|ref|YP_002403826.1| putative methyltransferase [Escherichia coli 55989]
 gi|218706035|ref|YP_002413554.1| putative methyltransferase [Escherichia coli UMN026]
 gi|227887568|ref|ZP_04005373.1| possible methyltransferase [Escherichia coli 83972]
 gi|238901697|ref|YP_002927493.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772572|ref|YP_003035403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162506|ref|YP_003045614.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|256021783|ref|ZP_05435648.1| predicted methyltransferase [Escherichia sp. 4_1_40B]
 gi|260845162|ref|YP_003222940.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|293405973|ref|ZP_06649965.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|293410947|ref|ZP_06654523.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415800|ref|ZP_06658443.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|297517122|ref|ZP_06935508.1| putative methyltransferase [Escherichia coli OP50]
 gi|298381774|ref|ZP_06991373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli FVEC1302]
 gi|300898358|ref|ZP_07116705.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300904291|ref|ZP_07122149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300920692|ref|ZP_07137100.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300930177|ref|ZP_07145595.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|300940214|ref|ZP_07154814.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300951756|ref|ZP_07165575.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300982032|ref|ZP_07175854.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|301022139|ref|ZP_07186062.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|301024815|ref|ZP_07188452.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|301047169|ref|ZP_07194262.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|301302891|ref|ZP_07209019.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|301648290|ref|ZP_07248031.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|306814398|ref|ZP_07448560.1| putative methyltransferase [Escherichia coli NC101]
 gi|307139167|ref|ZP_07498523.1| putative methyltransferase [Escherichia coli H736]
 gi|307313897|ref|ZP_07593513.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|312965450|ref|ZP_07779682.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 2362-75]
 gi|331643153|ref|ZP_08344288.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H736]
 gi|331648230|ref|ZP_08349320.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M605]
 gi|331653966|ref|ZP_08354967.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M718]
 gi|331658680|ref|ZP_08359624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA206]
 gi|331664097|ref|ZP_08365007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA143]
 gi|331673988|ref|ZP_08374751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA280]
 gi|83287927|sp|P0AE02|TRMJ_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|83287928|sp|P0AE01|TRMJ_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|83287929|sp|P0AE03|TRMJ_SHIFL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122422895|sp|Q1R8K0|TRMJ_ECOUT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123342618|sp|Q0T1Y7|TRMJ_SHIF8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123558992|sp|Q31XV8|TRMJ_SHIBS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|166234835|sp|A1AE69|TRMJ_ECOK1 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|26109306|gb|AAN81508.1|AE016764_190 Hypothetical tRNA/rRNA methyltransferase yfhQ [Escherichia coli
           CFT073]
 gi|1788881|gb|AAC75585.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799940|dbj|BAA16426.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|24052955|gb|AAN44078.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
 gi|30042178|gb|AAP17903.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|81246392|gb|ABB67100.1| putative ATP synthase beta subunit [Shigella boydii Sb227]
 gi|91073433|gb|ABE08314.1| putative ATP synthase beta subunit [Escherichia coli UTI89]
 gi|110616011|gb|ABF04678.1| putative ATP synthase beta subunit [Shigella flexneri 5 str. 8401]
 gi|115513884|gb|ABJ01959.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|157067688|gb|ABV06943.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
 gi|169889977|gb|ACB03684.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521401|gb|ACB19579.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           SMS-3-5]
 gi|187429275|gb|ACD08549.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|188488859|gb|EDU63962.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|192929249|gb|EDV82858.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194414590|gb|EDX30862.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|194423453|gb|EDX39444.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|215265954|emb|CAS10363.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218352891|emb|CAU98690.1| putative methyltransferase [Escherichia coli 55989]
 gi|218366227|emb|CAR03974.1| putative methyltransferase [Escherichia coli S88]
 gi|218428216|emb|CAR09131.2| putative methyltransferase [Escherichia coli ED1a]
 gi|218433132|emb|CAR14028.1| putative methyltransferase [Escherichia coli UMN026]
 gi|222034243|emb|CAP76984.1| Uncharacterized tRNA/rRNA methyltransferase yfhQ [Escherichia coli
           LF82]
 gi|227835918|gb|EEJ46384.1| possible methyltransferase [Escherichia coli 83972]
 gi|238862663|gb|ACR64661.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378132|emb|CAQ32905.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323616|gb|ACT28218.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974407|gb|ACT40078.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978574|gb|ACT44244.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|257760309|dbj|BAI31806.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260448388|gb|ACX38810.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
 gi|281601935|gb|ADA74919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella
           flexneri 2002017]
 gi|291428181|gb|EFF01208.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|291433448|gb|EFF06427.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|291471415|gb|EFF13899.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491693|gb|ADE90449.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           IHE3034]
 gi|298279216|gb|EFI20730.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli FVEC1302]
 gi|299881340|gb|EFI89551.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|300300917|gb|EFJ57302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|300357970|gb|EFJ73840.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300396346|gb|EFJ79884.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|300403749|gb|EFJ87287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300408860|gb|EFJ92398.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|300412340|gb|EFJ95650.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300449040|gb|EFK12660.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300454970|gb|EFK18463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300461937|gb|EFK25430.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|300841826|gb|EFK69586.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|301073641|gb|EFK88447.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|305851792|gb|EFM52244.1| putative methyltransferase [Escherichia coli NC101]
 gi|306906398|gb|EFN36913.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|307554555|gb|ADN47330.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|307625913|gb|ADN70217.1| putative methyltransferase [Escherichia coli UM146]
 gi|309702864|emb|CBJ02195.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
 gi|312289870|gb|EFR17758.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 2362-75]
 gi|312947109|gb|ADR27936.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313651021|gb|EFS15421.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315061851|gb|ADT76178.1| predicted methyltransferase [Escherichia coli W]
 gi|315137156|dbj|BAJ44315.1| RNA methyltransferase [Escherichia coli DH1]
 gi|315256554|gb|EFU36522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           85-1]
 gi|315288055|gb|EFU47457.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           110-3]
 gi|315292492|gb|EFU51844.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           153-1]
 gi|315300495|gb|EFU59724.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           16-3]
 gi|315615793|gb|EFU96425.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 3431]
 gi|320175096|gb|EFW50209.1| tRNA:Cm32/Um32 methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320186421|gb|EFW61151.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri CDC 796-83]
 gi|323170193|gb|EFZ55846.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli LT-68]
 gi|323188348|gb|EFZ73640.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli RN587/1]
 gi|323377568|gb|ADX49836.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
 gi|323936272|gb|EGB32563.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323949192|gb|EGB45083.1| RNA methyltransferase [Escherichia coli H252]
 gi|323955773|gb|EGB51531.1| RNA methyltransferase [Escherichia coli H263]
 gi|323961348|gb|EGB56960.1| RNA methyltransferase [Escherichia coli H489]
 gi|323971054|gb|EGB66302.1| RNA methyltransferase [Escherichia coli TA007]
 gi|324008496|gb|EGB77715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           57-2]
 gi|324118258|gb|EGC12154.1| RNA methyltransferase [Escherichia coli E1167]
 gi|330912308|gb|EGH40818.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli AA86]
 gi|331039951|gb|EGI12171.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H736]
 gi|331043090|gb|EGI15230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M605]
 gi|331048815|gb|EGI20891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M718]
 gi|331054345|gb|EGI26372.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA206]
 gi|331059896|gb|EGI31873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA143]
 gi|331069261|gb|EGI40653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA280]
 gi|332092802|gb|EGI97871.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella boydii 3594-74]
 gi|332344407|gb|AEE57741.1| RNA methyltransferase [Escherichia coli UMNK88]
 gi|332754064|gb|EGJ84435.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 4343-70]
 gi|332754141|gb|EGJ84510.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-671]
 gi|332756262|gb|EGJ86613.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 2747-71]
 gi|332765884|gb|EGJ96095.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri 2930-71]
 gi|333000512|gb|EGK20091.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri VA-6]
 gi|333000896|gb|EGK20467.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-218]
 gi|333002330|gb|EGK21894.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-272]
 gi|333016153|gb|EGK35485.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-227]
 gi|333016404|gb|EGK35735.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-304]
          Length = 246

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|62181109|ref|YP_217526.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224582915|ref|YP_002636713.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|75481665|sp|Q57LG7|TRMJ_SALCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|62128742|gb|AAX66445.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467442|gb|ACN45272.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715599|gb|EFZ07170.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 243

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E       E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEEMPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|152984133|ref|YP_001346680.1| putative methyltransferase [Pseudomonas aeruginosa PA7]
 gi|150959291|gb|ABR81316.1| probable methyltransferase [Pseudomonas aeruginosa PA7]
          Length = 308

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 11/246 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+     NIG  ARAM N  L+QL LV P + +P   A + ++ A  ++D+ RV 
Sbjct: 56  IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 114

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+EA+     +  T+AR+R     +L P+E A    E + +     ++FGRE  GLTN
Sbjct: 115 DSLEEALVGCSVVLGTSARDRRIPWPLLDPRECAATCLEHLEANGEAALVFGREYAGLTN 174

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NT 185
           EE+      +  P +P F SLN++ AV ++ +E     + +  K  K +           
Sbjct: 175 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 234

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
             T  EL  +  +LE +L + G+  P EK + ++  L  ++ R  + + E+ +LRGI++ 
Sbjct: 235 LVTADELELYYAHLEKTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 293

Query: 246 LDKFSR 251
             K +R
Sbjct: 294 TQKVAR 299


>gi|331684182|ref|ZP_08384778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H299]
 gi|320196373|gb|EFW70997.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli WV_060327]
 gi|331079134|gb|EGI50336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H299]
          Length = 246

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQAEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|319408555|emb|CBI82208.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
          Length = 279

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 125/270 (46%), Positives = 178/270 (65%), Gaps = 2/270 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M       QN   GP+I+LV+PQL ENIGMVARAM NF L+ LRLV PR+ +P+EKAR++
Sbjct: 1   MAGTNRSRQNIMNGPIIVLVEPQLPENIGMVARAMANFGLSNLRLVKPREVFPNEKARAA 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD +ID+  VF+ L +AIADL+++  TTAR R  FK+V +  EAA +L      G  
Sbjct: 61  ASKADHIIDNALVFNTLYDAIADLNYVLGTTARKRCGFKTVRSAVEAAGILRYHEGIGHK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           +GI+FGRERWGL N+EI+ ++ I++FPVNP F SLNI+QAVLLM +E M++ +       
Sbjct: 121 IGILFGRERWGLKNDEISFADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLDDLNDTA 180

Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
               +   A K  L  FL  LE +L+ RGYFRP E+K+ M+ ++ S+F R +L   E+ L
Sbjct: 181 FRVAEMKSADKATLHGFLSQLENALDSRGYFRPQERKEVMVLNIRSVFTRAKLSESEIRL 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           LRG++S+LD FS +  R +   + +  K +
Sbjct: 241 LRGVISSLDHFSPEFPRGSGAPVGRNRKKK 270


>gi|238750361|ref|ZP_04611862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           rohdei ATCC 43380]
 gi|238711292|gb|EEQ03509.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           rohdei ATCC 43380]
          Length = 257

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    L+ L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A  + +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCNLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           NEE+   +  ++ P NP + SLN++ AV ++ +E     +   +         +      
Sbjct: 122 NEELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAFLDRQQAAAPLVEEVEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQKTEK 266
            +   R  +    K  K
Sbjct: 241 DKCPPRATDDSEHKEIK 257


>gi|312962919|ref|ZP_07777406.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
 gi|311282946|gb|EFQ61540.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
          Length = 256

 Score =  317 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 130/249 (52%), Gaps = 11/249 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+     NIG VARAM N  LT+L LV PR  +P  +A + ++ A+ +++  
Sbjct: 2   LQNIRVVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPR-VFPHHEADARASGANDLLEKA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L++A+   + +  T+AR+R     +L P+E    +      G  + ++FGRE  G
Sbjct: 61  QVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGSKVVVEAVGGAEIALVFGREDSG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183
           LTNEE+   +  +  P +P F SLN+  AV ++ +E     + ++ +  K +        
Sbjct: 121 LTNEELQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEVRMAWLAAAGQPSKMEKEEVASTK 180

Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  EL  F ++LE +L    +  P EK + ++  L  ++ R  + R E+ +LRGI
Sbjct: 181 SGELATMDELERFYEHLEQTLVAIEFLDP-EKPRHLMARLRRLYGRSSVSRAEMNILRGI 239

Query: 243 VSTLDKFSR 251
           ++   K +R
Sbjct: 240 LTETQKAAR 248


>gi|323967980|gb|EGB63392.1| RNA methyltransferase [Escherichia coli M863]
 gi|323977285|gb|EGB72371.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|324113026|gb|EGC07002.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325496435|gb|EGC94294.1| methyltransferase [Escherichia fergusonii ECD227]
 gi|327252240|gb|EGE63912.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli STEC_7v]
          Length = 246

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     +    +SE+   ++     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|332992265|gb|AEF02320.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas sp. SN2]
          Length = 255

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 126/256 (49%), Gaps = 4/256 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV      NIG  ARAM    L+ L LVNP    P  +A + +A A  V+ + 
Sbjct: 2   LENIRIILVSTSHTGNIGSTARAMKTMGLSSLYLVNP-VHEPDGQASALAAGAGDVLANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ S L+EA++D   +  T+AR+R +   +L P+E    L + + S   V ++FGRE  G
Sbjct: 61  KIVSTLEEAVSDCGLVVGTSARSRTHSWPMLGPRECGEKLVQEV-SNFPVALVFGRENSG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+   +  +  P NP + SLN++ AV  + +E     +        E+  P    +
Sbjct: 120 LSNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAYLNRETYPSVEEEYP-LNED 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +LE   + R       ++  L  +F R     +E+ +LRGI++++DK  +
Sbjct: 179 LERFYTHLETTLESTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVK 237

Query: 252 QSSRRNNVLLQKTEKS 267
             +      +    +S
Sbjct: 238 APAPEPEPEIDNDNES 253


>gi|281179586|dbj|BAI55916.1| putative RNA methyltransferase [Escherichia coli SE15]
          Length = 246

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLASGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|114047315|ref|YP_737865.1| RNA methyltransferase [Shewanella sp. MR-7]
 gi|113888757|gb|ABI42808.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-7]
          Length = 241

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 4/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                +ILV      NIG  ARAM    L+ L L  PR      ++ + +A A  ++  +
Sbjct: 2   LSNIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEV-DGQSIALAAGASDILKHL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L+EAIAD   + AT+AR+R     +L P+EA   L     SG  V I+FGRE  G
Sbjct: 61  VKVDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+      ++ P NP + SLN++QAV ++ +E     +  +E    E+  P +  +
Sbjct: 120 LTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLS-AD 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK   
Sbjct: 179 LERFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVG 237

Query: 252 QSSR 255
              +
Sbjct: 238 NKQK 241


>gi|320180527|gb|EFW55458.1| tRNA:Cm32/Um32 methyltransferase [Shigella boydii ATCC 9905]
          Length = 245

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +       +   V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANI-PVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|332141980|ref|YP_004427718.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552002|gb|AEA98720.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 261

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 4/243 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     NIG  ARAM    L+ L LV+P +  P  +A + +A A  V+ + 
Sbjct: 2   LENIRIILVNTSHTGNIGSTARAMKTMGLSSLYLVDPVNE-PDGQASALAAGAGDVLANA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L+EA+ D   +  T+AR+R +   +L P++    L + +     V ++FGRE  G
Sbjct: 61  KIVGTLEEAVKDCGLVVGTSARSRTHSWPMLGPRDCGEKLVQEV-EKYPVALVFGRENSG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+   +  +  P NP + SLN++ AV  + +E     +        E+  P    +
Sbjct: 120 LTNEELQQCHFHMCIPANPEYSSLNLAAAVQTLCYEIRMAFLNRETYPSVEETYP-LNED 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +LE   + R       ++  L  +F R     +E+ +LRGI++++DK  +
Sbjct: 179 LERFYAHLETTLEGTSFIRKSH-PGVVMTKLRRLFNRARPESQELNILRGILASIDKSVK 237

Query: 252 QSS 254
            +S
Sbjct: 238 SAS 240


>gi|157144530|ref|YP_001451849.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
 gi|166234834|sp|A8AD50|TRMJ_CITK8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|157081735|gb|ABV11413.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L +A+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAV-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E +     E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENDETAEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
 gi|296387667|ref|ZP_06877142.1| RNA methyltransferase [Pseudomonas aeruginosa PAb1]
 gi|313109235|ref|ZP_07795203.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
 gi|115587063|gb|ABJ13078.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195886|gb|EAZ59949.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
 gi|218770122|emb|CAW25884.1| probable methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|310881705|gb|EFQ40299.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 257

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 129/251 (51%), Gaps = 11/251 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+     NIG  ARAM N  L+QL LV P + +P   A + ++ A  ++D+ RV 
Sbjct: 5   IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+EA++    +  T+AR+R     +L P+E A    E + +   V ++FGRE  GLTN
Sbjct: 64  DTLEEALSGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NT 185
           EE+      +  P +P F SLN++ AV ++ +E     + +  K  K +           
Sbjct: 124 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 183

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
             T  EL  +  +LE +L + G+  P EK + ++  L  ++ R  + + E+ +LRGI++ 
Sbjct: 184 LVTADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 242

Query: 246 LDKFSRQSSRR 256
             K +R  S +
Sbjct: 243 TQKVARGLSYK 253


>gi|218548031|ref|YP_002381822.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218355572|emb|CAQ88184.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 246

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     +    +SE+   ++     
Sbjct: 120 LTNEELQKCHYHVAITANPEYSSLNLAMAVQVIAYEVRMAWLATQENSEQVEHDETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|330936999|gb|EGH41095.1| RNA methyltransferase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 254

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + ++E+    +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQGEASRPASAHNAE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++ 
Sbjct: 181 LATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239

Query: 246 LDKFSRQSSRR 256
             K +R    +
Sbjct: 240 TQKAARGEPYK 250


>gi|330872894|gb|EGH07043.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 257

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L +L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-------- 183
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +S +  + +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQAGQGEAPKATSAH 180

Query: 184 -NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L + G+  P EK + ++  L  +F R E+ R E+ +LRG+
Sbjct: 181 NAELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPHK 253


>gi|293394858|ref|ZP_06639148.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera DSM 4582]
 gi|291422609|gb|EFE95848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera DSM 4582]
          Length = 241

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 6/241 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALAAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EAIA    +  T+AR+R     +L P+E  +   +       V ++FGRER GLT
Sbjct: 63  VDTFDEAIAGCSLVVGTSARSRTLPWPMLEPRECGVRAVQE-GEQAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT---KG 190
           N+E+   +  ++ P NP + SLN++ AV ++ ++     +   + +       A      
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYDVRVAYLERQQADAPPAPQEAAYPLVD 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L  F  +LE +L   G+ RP     +++  L  +F R     +E+ +LRG+++++DK  
Sbjct: 182 DLERFYQHLEQTLSTTGFIRPTH-PGQVMSRLRRLFTRARPEAQELNILRGMLTSIDKQI 240

Query: 251 R 251
           +
Sbjct: 241 K 241


>gi|257487213|ref|ZP_05641254.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330985000|gb|EGH83103.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 257

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L++A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +S  + + +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAH 180

Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+
Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPYK 253


>gi|283832087|ref|ZP_06351828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
           youngae ATCC 29220]
 gi|291071712|gb|EFE09821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
           youngae ATCC 29220]
          Length = 243

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI S 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +       +   V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEA-TNSPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT--- 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + + E +   +   A    
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVRMAWLATQEGDKTAEYAEAEYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIREGH-PGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|170767374|ref|ZP_02901827.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
 gi|170123708|gb|EDS92639.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
          Length = 246

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVITYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|311694375|gb|ADP97248.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
          Length = 287

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/269 (32%), Positives = 132/269 (49%), Gaps = 19/269 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV+     NIG VARAM N  L  L LVNP   +P E + + +A A  V+DS  V 
Sbjct: 18  IRIVLVETSHSGNIGAVARAMKNMGLGNLWLVNP-SSFPDEASYARAAGASDVLDSAHVV 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+L EA+AD   +  T+AR R     V AP EAA    E   SG  V ++FGRE  GL+N
Sbjct: 77  SSLDEALADCVLVMGTSARGRKVPWPVCAPPEAAAAAAEHAGSG-PVAMVFGRENHGLSN 135

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--------------SEKNV 180
           +E+   +  I  P NP + SLN++ AV +M +E     + S                 + 
Sbjct: 136 DELQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMYYLRSLEGGEGSPYLKSMTRPGDE 195

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
                PA   ++  F  +LE  L +  + R  E  ++++  L  +F R  L + E+ +LR
Sbjct: 196 GWDVPPAKVHDVEGFFGHLEQVLIDVDFHR-RENPRQLMTRLRRLFQRARLDQMEINILR 254

Query: 241 GIVSTLDKFS--RQSSRRNNVLLQKTEKS 267
           GI++ + K +  R +S+        TE+ 
Sbjct: 255 GILTAVQKAAGTRNNSKSTEADTAATEQD 283


>gi|331009172|gb|EGH89228.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 257

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L++A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---------E 182
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +S  + +          
Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGGTPKAVSAH 180

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+
Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPYK 253


>gi|49475602|ref|YP_033643.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238409|emb|CAF27636.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 278

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 132/261 (50%), Positives = 177/261 (67%), Gaps = 2/261 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI
Sbjct: 9   KNLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPREEFPNEKARAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +   +F  L++AIADLH+++ATTAR R  FK+V +  EAAI+L +R    Q  GI+FGRE
Sbjct: 69  NDAVIFDTLRDAIADLHYVFATTARERCGFKTVKSAVEAAIILRQRENIKQRTGIVFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186
           RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M++ +  +        Q  P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLEDANDTAFRAVQMEP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K     FL  LE +L+ RGYFRP E+K+ ML +L S+F R      EV  LRGI+S+L
Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRFLRGIISSL 248

Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
           D FS +  R +     +  K 
Sbjct: 249 DHFSPKFPRGSGAPADRDRKK 269


>gi|330895873|gb|EGH28159.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 255

 Score =  316 bits (810), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 133/252 (52%), Gaps = 9/252 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + ++E+  +          
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQQGEASKPASAHNA 180

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++
Sbjct: 181 ELATMDEMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLT 239

Query: 245 TLDKFSRQSSRR 256
              K +R    +
Sbjct: 240 ETQKAARGEPYK 251


>gi|238788189|ref|ZP_04631984.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           frederiksenii ATCC 33641]
 gi|238723776|gb|EEQ15421.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           frederiksenii ATCC 33641]
          Length = 256

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 123/258 (47%), Gaps = 6/258 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER G
Sbjct: 61  TIVDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPAT 188
           LTN+E+   +  ++ P NP + SLN++ AV ++ +E     +   +      +E+     
Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAPIVEEEEAPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K
Sbjct: 180 VDDLERFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEK 238

Query: 249 FSRQSSRRNNVLLQKTEK 266
             +   R  +      + 
Sbjct: 239 QDKYPQRSADSSGHDDKN 256


>gi|330975889|gb|EGH75955.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 254

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 134/251 (53%), Gaps = 8/251 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + ++E+    +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAATEQGEAFRPASAHNAE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT  E+  F  +LE +L   G+F P EK + ++  L  ++ R E+ R E+ +LRG+++ 
Sbjct: 181 LATMDEMEGFYIHLEATLVAIGFFDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239

Query: 246 LDKFSRQSSRR 256
             K +R    +
Sbjct: 240 TQKAARGEPYK 250


>gi|284922482|emb|CBG35569.1| putative RNA methyltransferase [Escherichia coli 042]
          Length = 246

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETTHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|117920726|ref|YP_869918.1| RNA methyltransferase [Shewanella sp. ANA-3]
 gi|117613058|gb|ABK48512.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. ANA-3]
          Length = 241

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 4/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                +ILV      NIG  ARAM    L+ L L  PR      ++ + +A A  ++  +
Sbjct: 2   LSNIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEV-DGQSIALAAGASDILKHL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L+EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  G
Sbjct: 61  VKVDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLTG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+      ++ P NP + SLN++QAV ++ +E     +  +E    E+  P +  +
Sbjct: 120 LTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTEAPQVEEEYPLS-AD 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK   
Sbjct: 179 LERFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVG 237

Query: 252 QSSR 255
              +
Sbjct: 238 NKQK 241


>gi|302185759|ref|ZP_07262432.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
          Length = 254

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + ++E+    +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGDASRPASAHNAE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++ 
Sbjct: 181 LATMDEMEGFYAHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239

Query: 246 LDKFSRQSSRR 256
             K +R    +
Sbjct: 240 TQKAARGEPYK 250


>gi|66044482|ref|YP_234323.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255189|gb|AAY36285.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330969083|gb|EGH69149.1| RNA methyltransferase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 254

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + ++E+    +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGEASRPASAHNAE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++ 
Sbjct: 181 LATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239

Query: 246 LDKFSRQSSRR 256
             K +R    +
Sbjct: 240 TQKAARGEPYK 250


>gi|71738099|ref|YP_273564.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558652|gb|AAZ37863.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320322935|gb|EFW79025.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329942|gb|EFW85930.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 257

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++S 
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILESA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L++A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  KVVATLEDALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +   + + +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAALAHSEQGETPKAVSAH 180

Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+
Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPYK 253


>gi|290476021|ref|YP_003468918.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           bovienii SS-2004]
 gi|289175351|emb|CBJ82154.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           bovienii SS-2004]
          Length = 244

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 8/246 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     N+G  ARAM    LT L LVNP    P   + + SA A  VI + 
Sbjct: 2   LENIRIILVETSHTGNMGSAARAMKTMGLTNLYLVNPLVQ-PDSHSIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + + L EA+A    +  T+AR+R     ++ P+E       +      V ++FGRER G
Sbjct: 61  TIVNTLDEALAGCELVIGTSARSRTLSWPMVEPRECGERCI-KAAGHSPVAVVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-----NVKEQNTP 186
           LTNEE+   N  +  P NP + SLN++ AV L  +E     +   EK     + + +   
Sbjct: 120 LTNEELQKCNYHLYIPTNPEYGSLNLAMAVQLASYEIRMAYLAVQEKSEHVESTEHEVEY 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               ++  F  +LE  L + G+ R      ++++ L  ++ R     +E+ +LRGI++++
Sbjct: 180 PPVEDMERFYQHLEQVLNDSGFIRKAH-PGQIMNKLRRLYTRARPETQELNILRGILTSM 238

Query: 247 DKFSRQ 252
            K+S +
Sbjct: 239 GKWSGK 244


>gi|198242671|ref|YP_002216611.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197937187|gb|ACH74520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326624366|gb|EGE30711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 243

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNG 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E       E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|77361588|ref|YP_341163.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876499|emb|CAI87721.1| putative tRNA/rRNA methyltransferase (trmH family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 241

 Score =  315 bits (809), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 4/239 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+     NIG  ARAM    L++L LV+P     S  A + +A A  V+ +  + 
Sbjct: 6   IRVVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDS-HASALAAGASDVLGNAVIV 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +AIAD      T+AR+R     ++ P+E    L     +G  V ++FGRE  GL+N
Sbjct: 65  DTVADAIADCALTIGTSARSRTLSWPMVEPRECGEKLVSEAVNG-PVALVFGRENSGLSN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELL 193
           +E+ L N  +  P NP + SLN++ AV  + +E     +    K  +E +T   +  +  
Sbjct: 124 DELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAFLNQQPKIAEEDDTVYPSSKQTE 183

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            F  +LE +L   G+    +    ++  L  +F R      E+ +LRGI+++++K   +
Sbjct: 184 LFYGHLEETLFNTGFIIK-QHPGMVMTKLRRMFNRARPEDAEMNILRGILTSINKSIPK 241


>gi|237705043|ref|ZP_04535524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           sp. 3_2_53FAA]
 gi|226901409|gb|EEH87668.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           sp. 3_2_53FAA]
          Length = 246

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHCHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|218701042|ref|YP_002408671.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218371028|emb|CAR18855.1| putative methyltransferase [Escherichia coli IAI39]
          Length = 246

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLRATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|330950802|gb|EGH51062.1| RNA methyltransferase [Pseudomonas syringae Cit 7]
          Length = 254

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 133/251 (52%), Gaps = 8/251 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGDGIEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------T 185
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + ++E+    +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRVAWLAAAEQGEASRPASAHSAE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+++ 
Sbjct: 181 LATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGVLTE 239

Query: 246 LDKFSRQSSRR 256
             K +R    +
Sbjct: 240 TQKAARGEPYK 250


>gi|113970074|ref|YP_733867.1| RNA methyltransferase [Shewanella sp. MR-4]
 gi|113884758|gb|ABI38810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-4]
          Length = 241

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 4/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                +ILV      NIG  ARAM    L+ L L  PR      ++ + +A A  ++  +
Sbjct: 2   LSNIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEV-DGQSIALAAGASDILKHL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L+EAIAD   + AT+AR+R     +L P+EA   L     SG  V I+FGRE  G
Sbjct: 61  VKVDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGQKLVTEGLSG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+      ++ P NP + SLN++QAV ++ +E     +  +     E+  P +  +
Sbjct: 120 LTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTAAPQVEEEYPLS-AD 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK   
Sbjct: 179 LERFFVHLESTLSSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVG 237

Query: 252 QSSR 255
              +
Sbjct: 238 NKQK 241


>gi|238765526|ref|ZP_04626442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           kristensenii ATCC 33638]
 gi|238696265|gb|EEP89066.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           kristensenii ATCC 33638]
          Length = 257

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 7/257 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   +        E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQKTEK 266
            +   R  +V     + 
Sbjct: 241 DKYPQRGADVSEHNNKN 257


>gi|330965901|gb|EGH66161.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 257

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L +L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVCTTHPGNIGGAARAMKNMGLARLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +S +  + +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVRMAWLAASVQAGQGETPKAASAH 180

Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L + G+  P EK + ++  L  +F R E+ R E+ +LRG+
Sbjct: 181 SAELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPYK 253


>gi|56696923|ref|YP_167285.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56678660|gb|AAV95326.1| RNA methyltransferase, TrmH family, group 1 [Ruegeria pomeroyi
           DSS-3]
          Length = 248

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 152/248 (61%), Gaps = 2/248 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P I+LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ +A + S+ A  +
Sbjct: 1   MPSDKAQPAIVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNSRAVAMSSGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  +++ +L  A+ D  +++ATTAR R   K V +P+ A  +  E++ +G+ V ++FG 
Sbjct: 61  LDEAQLYDDLPGALGDCTYVFATTARPREMTKPVYSPERAMQLAAEKLAAGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNT 185
           ER GL N++IA +NAII+ PVNP + SLN+ Q VLL+ +E M  +  +V        +  
Sbjct: 121 ERAGLENDDIARANAIITVPVNPDYASLNLGQCVLLVAYEWMRQTGDVVHLSDAPGPKGE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT  E+    ++ E  L+E G+F P EK + M  +L +++ R  L R +V +L GI+  
Sbjct: 181 WATGLEIEKLAEHYEQRLDEAGFFFPPEKAEGMQQNLRNLWSRMRLTRADVQMLHGIMRQ 240

Query: 246 LDKFSRQS 253
           + ++  + 
Sbjct: 241 MVRWKERG 248


>gi|37527165|ref|NP_930509.1| hypothetical protein plu3285 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81418808|sp|Q7N222|TRMJ_PHOLL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|36786599|emb|CAE15659.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 241

 Score =  315 bits (808), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 126/243 (51%), Gaps = 5/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     N+G  ARAM    LT L LVNP    P   A + SA A  VI   
Sbjct: 2   LENIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPLVQ-PDSHAIALSAGASDVIGHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +L +A+A    +  T+AR+R     ++ P+E      ++     +V I+FGRER G
Sbjct: 61  TIVDSLDKALAGCGLVIGTSARSRTLSWPMVEPRECGERSVQQA-EHASVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +   +K  +  ++      
Sbjct: 120 LTNEELQKCHYHLNIPTNPEYGSLNLAMAVQLVSYEIRMAYLARQDKTEQKTDEVEYPLA 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++  F  +LE  L + G+ R      ++++ L  +F R     +E+ +LRGI+S+++K+
Sbjct: 180 DDMERFYHHLECVLNDSGFIRKAH-PGQIMNRLRRLFTRARPEMQELNILRGILSSVEKW 238

Query: 250 SRQ 252
           +++
Sbjct: 239 AKK 241


>gi|319404223|emb|CBI77816.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 273

 Score =  315 bits (807), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 127/269 (47%), Positives = 177/269 (65%), Gaps = 2/269 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + QN   GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++
Sbjct: 1   MAGTNRKGQNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD +I+   +F  L +AIADL+++YATTAR R  FK+V +  EAA +L      G  
Sbjct: 61  ASKADHIINDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +  S    
Sbjct: 121 TGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTA 180

Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
               +  PA K  L  FL  LE +L+ RGYFRP E+K+ M+ ++ S+F R      E+ L
Sbjct: 181 FRAVELKPADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQL 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
           LRG++S+LD FS +  R +     +  K 
Sbjct: 241 LRGVISSLDHFSPKFPRGSGAPEGRDRKK 269


>gi|332162657|ref|YP_004299234.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606763|emb|CBY28261.1| tRNA:Cm32/Um32 methyltransferase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666887|gb|ADZ43531.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859249|emb|CBX69599.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           enterocolitica W22703]
          Length = 257

 Score =  315 bits (807), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 7/253 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E   + +   +        E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVSFLDRQQAAAPIVEEEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQ 262
            +   R  +    
Sbjct: 241 DKYPQRGADGSEH 253


>gi|119945066|ref|YP_942746.1| RNA methyltransferase [Psychromonas ingrahamii 37]
 gi|119863670|gb|ABM03147.1| RNA methyltransferase, TrmH family, group 1 [Psychromonas
           ingrahamii 37]
          Length = 254

 Score =  315 bits (807), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 4/255 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IIL+      N+G  ARAM    LT+L LV P       K+ + SA A  V+ + 
Sbjct: 2   LENVRIILIGTSHPGNVGSAARAMKTMGLTKLVLVTPECEI-DGKSIALSAGASDVLKNH 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L +AIAD   +   +AR+R     +L P+E    + E       V ++FGRE  G
Sbjct: 61  KVCNTLDDAIADCGLVIGASARSRTLDWPMLDPREMGQKVVEEGNK-HPVALVFGRENSG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTN+E+   +  +  P NP + SLN++ AV  + +E     + S     + Q  P    E
Sbjct: 120 LTNDELQKCHFHVFIPANPDYSSLNLAMAVQTLSYEVRMEFLASKAYPEQPQEYP-LADE 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +    ++LE +L++ G+  P      +++ L   F R     +E+ + RGI+S++ K   
Sbjct: 179 IEGLFNHLEQTLKDTGFIVPAH-PGLVMNKLRRFFNRARPEVKELRMWRGILSSVQKSVS 237

Query: 252 QSSRRNNVLLQKTEK 266
            + +  N  +Q   K
Sbjct: 238 SAEKEVNQSMQAKNK 252


>gi|15599012|ref|NP_252506.1| methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
 gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|126168652|gb|EAZ54163.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
          Length = 257

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 128/251 (50%), Gaps = 11/251 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+     NIG  ARAM N  L+QL LV P + +P   A + ++ A  ++D+ RV 
Sbjct: 5   IRVVLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVV 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+EA+     +  T+AR+R     +L P+E A    E + +   V ++FGRE  GLTN
Sbjct: 64  DTLEEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NT 185
           EE+      +  P +P F SLN++ AV ++ +E     + +  K  K +           
Sbjct: 124 EELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTE 183

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
             T  EL  +  +LE +L + G+  P EK + ++  L  ++ R  + + E+ +LRGI++ 
Sbjct: 184 LVTADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTE 242

Query: 246 LDKFSRQSSRR 256
             K +R  S +
Sbjct: 243 TQKVARGLSYK 253


>gi|146312670|ref|YP_001177744.1| RNA methyltransferase [Enterobacter sp. 638]
 gi|145319546|gb|ABP61693.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
          Length = 244

 Score =  315 bits (807), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 6/246 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSTAEA-EHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + EK      E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAAQEKGETAEPEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRG+++++ +
Sbjct: 180 VDDLERFYGHLEQTLLTTGFIR-ASHPGQVMNKLRRLFTRARPETQELNILRGMLASIIE 238

Query: 249 FSRQSS 254
              + S
Sbjct: 239 QKNKES 244


>gi|260856626|ref|YP_003230517.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257755275|dbj|BAI26777.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|323156188|gb|EFZ42347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli EPECa14]
          Length = 245

 Score =  314 bits (806), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 122/243 (50%), Gaps = 6/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTPAT 188
           LTNEE+   +  ++   NP + SLN++ A  ++ +E     + +    E+   E+     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAAQVIAYEVRMAWLATQENGEQVEHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  F  +LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++
Sbjct: 180 VDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQ 238

Query: 249 FSR 251
            ++
Sbjct: 239 QNK 241


>gi|123441400|ref|YP_001005387.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166234838|sp|A1JKQ0|TRMJ_YERE8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122088361|emb|CAL11152.1| putative SpoU-family rRNA methylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 257

 Score =  314 bits (806), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 7/253 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   +        E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPIVEEEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQ 262
            +   R  +    
Sbjct: 241 DKYPQRGADGSEH 253


>gi|238758816|ref|ZP_04619989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           aldovae ATCC 35236]
 gi|238702924|gb|EEP95468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           aldovae ATCC 35236]
          Length = 257

 Score =  314 bits (806), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 121/257 (47%), Gaps = 7/257 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVIGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   +  +     E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAFLERQQAVLPVIETEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEVQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQKTEK 266
            +             + 
Sbjct: 241 DKYPQGSAGDAAPDNKN 257


>gi|213971532|ref|ZP_03399643.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato T1]
 gi|301386137|ref|ZP_07234555.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
 gi|302060163|ref|ZP_07251704.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
 gi|302135106|ref|ZP_07261096.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923724|gb|EEB57308.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato T1]
          Length = 257

 Score =  314 bits (806), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  LT+L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+      V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGERAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +S +  + +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVRMAWLAASVQADEGETPKVASAH 180

Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L + G+  P EK + ++  L  +F R E+ R E+ +LRG+
Sbjct: 181 NAELATMDEMEGFYGHLETTLVDIGFLDP-EKPRHLMARLRRLFGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPYK 253


>gi|49474226|ref|YP_032268.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239730|emb|CAF26112.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 278

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 129/261 (49%), Positives = 176/261 (67%), Gaps = 2/261 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GP+IILV+PQL +NIGMVARAM NF L++LRLV PR+ +P++KAR++++ AD VI
Sbjct: 9   KNLTNGPIIILVEPQLPDNIGMVARAMANFGLSKLRLVKPREEFPNDKARAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +   +F  L +AIADLH+++ATTAR R  FK+V +  EAA +L +R   G   GI+FGRE
Sbjct: 69  NDAVIFDTLHDAIADLHYVFATTARERCGFKTVKSAVEAASMLRQRENIGHRTGIVFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186
           RWGL N EI+L + II+FPVNP F SLNI+QAVLLM +E M++ + +         +  P
Sbjct: 129 RWGLENYEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKSGLENLNDTAFRAAEMEP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K     FL  LE +L+ RGYFRP E+K+ ML +L S+F R      EV LLRGI+S+L
Sbjct: 189 ANKATFHGFLSQLEDALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248

Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
           D FS +  R +   + +  K 
Sbjct: 249 DHFSPKFPRGSGAPVDRDRKK 269


>gi|304398597|ref|ZP_07380469.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
 gi|304353808|gb|EFM18183.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
          Length = 250

 Score =  314 bits (806), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 7/251 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A S +A A  VI   
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGEA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  +L EAIA    +  T+AR+R+    +L  +E  +   E       V ++FGRER G
Sbjct: 61  KIVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSVEEGQQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + S E+       E++   
Sbjct: 120 LTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQSQEQASPAPKYEESPYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  ++E  +   G+ R      +++  L  ++ R    R+E+ +LRG++S+ +
Sbjct: 180 LVDDLERFYQHMEQMMLNSGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSSFE 238

Query: 248 KFSRQSSRRNN 258
           K   +    +N
Sbjct: 239 KRKNEKKEADN 249


>gi|308187782|ref|YP_003931913.1| RNA methyltransferase [Pantoea vagans C9-1]
 gi|308058292|gb|ADO10464.1| putative RNA methyltransferase [Pantoea vagans C9-1]
          Length = 250

 Score =  314 bits (805), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 7/251 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A S +A A  VI   
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGDA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  +L EAIA    +  T+AR+R+    +L  +E  +   E       V ++FGRER G
Sbjct: 61  KIVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSVEEGQQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + S E+       E++   
Sbjct: 120 LTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQSQEQASPPPKFEESPYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  ++E  +   G+ R      +++  L  ++ R    R+E+ +LRG++S+ +
Sbjct: 180 LVDDLERFYQHMEQMMLNSGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSSFE 238

Query: 248 KFSRQSSRRNN 258
           K   +    +N
Sbjct: 239 KRKNEKKEPDN 249


>gi|254513994|ref|ZP_05126055.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
 gi|219676237|gb|EED32602.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
          Length = 254

 Score =  314 bits (805), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 131/241 (54%), Gaps = 6/241 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A    I+LV+P    NIG VARAM    L++L LV P + +P ++A   +  A+ V++S
Sbjct: 2   NADHIRIVLVEPSHPGNIGAVARAMKTMGLSRLVLVAP-EQFPDQQATWRAVWANDVLES 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V + L EAIAD  F+  T AR+R     VL P+ AA  +  +   G+ V I+FGRE  
Sbjct: 61  ATVVATLDEAIADCGFVVGTCARDRRLPWPVLDPRRAASEMAAKSRQGE-VAILFGREDN 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNTPA 187
           GL+N+E+   N  ++ P +  + SLN++ AV ++ +E       S + ++ N +     A
Sbjct: 120 GLSNDELMRCNLHLAIPTSEAYNSLNLAMAVQIVCYELHMLVVESSLPTQSNAQWDEPLA 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T+  +  F  +LE ++ + G+  P    ++++  L  ++ R  +   E+ +LRGI++   
Sbjct: 180 TQENIERFYVHLEETMSQIGFLNPA-APRQLMPRLRRLYNRLGMDEMELNILRGILTETQ 238

Query: 248 K 248
           K
Sbjct: 239 K 239


>gi|238796769|ref|ZP_04640275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           mollaretii ATCC 43969]
 gi|238719500|gb|EEQ11310.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           mollaretii ATCC 43969]
          Length = 257

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 7/257 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           NEE+   +  ++ P NP + SLN++ AV ++ +E     +   +        E+      
Sbjct: 122 NEELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQAAAPVIEEEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYLHLEQVLSHSGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQKTEK 266
            +   R      +  + 
Sbjct: 241 GKYPQRDAGHSAENNKN 257


>gi|330894480|gb|EGH27141.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 257

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 132/254 (51%), Gaps = 11/254 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+ A+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLENALVGCRLVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+   +  +  P +P F SLN++ AV ++ +E     + +S  + + +        
Sbjct: 121 LTNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVRMAWLAASAHSEQGETPKAVSAH 180

Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R E+ +LRG+
Sbjct: 181 NAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERSELSILRGV 239

Query: 243 VSTLDKFSRQSSRR 256
           ++   K +R    +
Sbjct: 240 LTETQKAARGEPYK 253


>gi|239832084|ref|ZP_04680413.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824351|gb|EEQ95919.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
           intermedium LMG 3301]
          Length = 302

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 123/257 (47%), Positives = 178/257 (69%), Gaps = 2/257 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 33  AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 92

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 93  VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 152

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +  + V    +   A K
Sbjct: 153 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENETETVFRGPELELAPK 212

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL    ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG++++LD F
Sbjct: 213 QELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 272

Query: 250 SRQSSRRNNVLLQKTEK 266
           S +  R +     +  K
Sbjct: 273 SPKKPRGSGAPDGRARK 289


>gi|319407233|emb|CBI80872.1| RNA methyltransferase [Bartonella sp. 1-1C]
          Length = 273

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/269 (47%), Positives = 177/269 (65%), Gaps = 2/269 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + QN   GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++
Sbjct: 1   MAGTNRKGQNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD +I+   +F  L +AIADL+++YATTAR R  FK+V +  EAA +L      G  
Sbjct: 61  ASKADHIINDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRCYENIGHK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +  S    
Sbjct: 121 TGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDSNDTA 180

Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
               +  PA K  L  FL  LE +L+ RGYFRP E+K+ M+ ++ S+F R      E+ L
Sbjct: 181 FRAVELKPADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQL 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
           LRG++S+LD FS +  R +     +  K 
Sbjct: 241 LRGVISSLDHFSPKFPRGSGAPEGRDRKK 269


>gi|319898916|ref|YP_004159009.1| RNA methyltransferase [Bartonella clarridgeiae 73]
 gi|319402880|emb|CBI76431.1| RNA methyltransferase [Bartonella clarridgeiae 73]
          Length = 277

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/270 (47%), Positives = 178/270 (65%), Gaps = 2/270 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + QN   GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++
Sbjct: 1   MAGTNRKCQNVTNGPIIILVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVKAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD +I+   +F  L++AIADL+++YATTAR R  FK+V +  EAA +L      G  
Sbjct: 61  ASKADHIINDTLIFDTLRDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +       
Sbjct: 121 TGILFGRERWGLENNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLNDTA 180

Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
               +  PA K  L  FL  LE +L+ RGYFRP E+KK M+ ++ S+F R      E+ L
Sbjct: 181 FRAVELKPANKATLHGFLSQLEDALDVRGYFRPQERKKVMVTNIRSVFTRANFSESEIQL 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           LRGI+S+LD FS +  R +   L+  +  +
Sbjct: 241 LRGIISSLDHFSPKFPRGSGAPLEGGDSKK 270


>gi|254464114|ref|ZP_05077525.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
           bacterium Y4I]
 gi|206685022|gb|EDZ45504.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
           bacterium Y4I]
          Length = 250

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 98/250 (39%), Positives = 154/250 (61%), Gaps = 2/250 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +      P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + S+ A  +
Sbjct: 1   MPTDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++ +++ EA+ D  +++ATTAR R   K V +P+ A  +  E+I +G+ V ++FG 
Sbjct: 61  LDEAQLCADVPEALGDCTYVFATTARQRGLTKPVYSPERAMQIAAEKIAAGEKVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNT 185
           ER GL NE+IA +NAIIS PVNPL+ SLN+ Q VLL  +E M  S  +V    ++  +  
Sbjct: 121 ERAGLENEDIAKANAIISVPVNPLYASLNLGQCVLLTGYEWMRQSGDVVHETTDLGRKGD 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT  E+   +++ E  L+E G+F P EK + M  +L +++ R  + R +V +L GI+  
Sbjct: 181 WATGVEVEKLVEHYEERLDEAGFFYPPEKAEGMKTNLRNLWSRMRMTRSDVQMLHGIMRQ 240

Query: 246 LDKFSRQSSR 255
           + ++  +   
Sbjct: 241 MVRWKERGGE 250


>gi|183599756|ref|ZP_02961249.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
 gi|188022017|gb|EDU60057.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
          Length = 243

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 7/245 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                IILV+     N+G  ARAM    L+ L LVNP+   P   A + SA A  VI + 
Sbjct: 2   LDNIRIILVETSHTGNMGSTARAMKTMGLSNLYLVNPQVQ-PDSHAIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + ++L EA+     +  T+AR+R     ++AP+E       +  +   V IIFGRER G
Sbjct: 61  TIVNSLDEALEGCKLVIGTSARSRTLSWPMVAPRECGEKSVMQAKT-APVAIIFGRERIG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPA 187
           LTNEE+      +  P NP + SLN++ AV L+ +E     +   EKN     +++    
Sbjct: 120 LTNEELQKCQYHLYIPTNPEYGSLNLAMAVQLVSYEIRMAYLALEEKNAVNSEEDEVEYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              ++  F  +LE  L E G+ R       +++ L  ++ R  +  +E+ +LRGI+++++
Sbjct: 180 PVEDIERFYVHLESVLNESGFIRKAH-PGLIMNKLRRLYTRAHIETQELHILRGILTSME 238

Query: 248 KFSRQ 252
           K++++
Sbjct: 239 KWAKK 243


>gi|238784221|ref|ZP_04628234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           bercovieri ATCC 43970]
 gi|238714930|gb|EEQ06929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           bercovieri ATCC 43970]
          Length = 257

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 7/257 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  + R      V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAREAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   +        E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAHLDRLQAAAPIIEEEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SRQSSRRNNVLLQKTEK 266
            +   R     L   + 
Sbjct: 241 DKYPQRAAGDSLGDGKN 257


>gi|319405661|emb|CBI79284.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 276

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 124/269 (46%), Positives = 174/269 (64%), Gaps = 2/269 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + QN   GP+I+LV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EK +++
Sbjct: 1   MAGTNRKCQNVMNGPIIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVQAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD +I+   +F  L +AIADL+++YATTAR R  FK+V +  EAA +L      G  
Sbjct: 61  ASKADHIINDTLIFDTLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGL N EI+L++ II+FPVNP F SLNI+QAVLL+ +E M++ +       
Sbjct: 121 TGILFGRERWGLKNNEISLADEIITFPVNPAFASLNIAQAVLLIAYEWMKSGLEDLSDTA 180

Query: 181 KEQ--NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                  PA K  L  FL  LE +L+ RGYFRP E+K+ M+ ++ S+F R      E+ L
Sbjct: 181 FRAIKLKPADKATLHGFLSQLEDALDVRGYFRPQERKEVMVTNIRSVFTRANFSESEIQL 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
           LRG++S+LD FS +  R +     +  K 
Sbjct: 241 LRGVISSLDHFSPKFPRGSGAPEGRDRKK 269


>gi|262274801|ref|ZP_06052612.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
 gi|262221364|gb|EEY72678.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
          Length = 243

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 6/246 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV      NIG  ARAM    L  + LV P       +A + +A A  + ++ 
Sbjct: 2   LENIRIVLVGTTHSGNIGSAARAMKVMGLKHMVLVAPECKV-DGQAIALAAGASDIANNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R+   ++EA+AD   +  T+ARNR+    +L P+E  I   E       V  +FGRER G
Sbjct: 61  RIVDTVEEAVADCALVIGTSARNRSLEWPMLDPRECGIKAIEEAPQ-HPVAFVFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189
           LTNEE+   N  ++ P NP + SLN++ AV  + +E     I S      VKEQ+ P   
Sbjct: 120 LTNEELQACNFHVAIPANPAYSSLNLAMAVQTLCYEARMAWIDSQAYKGEVKEQSYP-LA 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L++ G+         ++  L  +F R     +E+ +LRG++S+++K 
Sbjct: 179 EDLERFYVHLEQVLDKTGFINKSH-PGMVMTKLRRLFNRARPESQELNILRGVLSSVEKQ 237

Query: 250 SRQSSR 255
            +++ +
Sbjct: 238 MKEAQK 243


>gi|254719254|ref|ZP_05181065.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|256369620|ref|YP_003107130.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
           4915]
 gi|265984253|ref|ZP_06096988.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306838004|ref|ZP_07470862.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
 gi|255999782|gb|ACU48181.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
           4915]
 gi|264662845|gb|EEZ33106.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306406928|gb|EFM63149.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
          Length = 276

 Score =  313 bits (804), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/257 (48%), Positives = 178/257 (69%), Gaps = 2/257 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V    +   A K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251

Query: 250 SRQSSRRNNVLLQKTEK 266
           + +  R +     +  K
Sbjct: 252 TPKKPRGSGAPEGRARK 268


>gi|161502300|ref|YP_001569412.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863647|gb|ABX20270.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 242

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 5/242 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+     +  T+AR+R     +L P+E  +       +   V ++FGRER G
Sbjct: 61  QIVDTLDEALTGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEA-TNTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E      E+      
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAEHEETPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L   G+ R      ++++ L  +F R      E+ +LRG+++++++ 
Sbjct: 180 DDLERFYSHLEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESLELNILRGMLASIEQQ 238

Query: 250 SR 251
           ++
Sbjct: 239 NK 240


>gi|254786631|ref|YP_003074060.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
 gi|237685931|gb|ACR13195.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
          Length = 261

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 132/252 (52%), Gaps = 7/252 (2%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +       +++V+     NIG  ARAM N  L++L LV+P++ +P+EKA   +A A  V+
Sbjct: 3   EPQFPNIRMVMVNTTHPGNIGAAARAMKNMGLSELVLVDPKE-FPAEKAVWRAAGATDVL 61

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++ RV S L EAI+D   +  T+AR R     +L P+E          +   V ++FGRE
Sbjct: 62  ENARVVSTLDEAISDCGLVIGTSARERRIPWPLLTPRECGDRC-WFEAAKHPVAVVFGRE 120

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN---- 184
             GLTNEE+   N  +  P NP + +LNIS A+ ++ +E   +++ + E      +    
Sbjct: 121 DRGLTNEELHKCNYHVHIPSNPEYSALNISAALQVICYEIRMSALTAQEGKAPHFDDWDM 180

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA  G L  +  +LE +L +  +  P +  ++ +  L  +F R  + + E+ +LRG+++
Sbjct: 181 PPADNGALEHYYAHLEDTLIKLEFLNP-DNPRQTVTRLRRLFNRIRMDQMELNILRGMLT 239

Query: 245 TLDKFSRQSSRR 256
           ++  +   +  +
Sbjct: 240 SVQNYIYHTDEK 251


>gi|148560334|ref|YP_001259115.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|225627665|ref|ZP_03785702.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
           Cudo]
 gi|237815613|ref|ZP_04594610.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
           2308 A]
 gi|260546656|ref|ZP_05822395.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260565552|ref|ZP_05836036.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260566275|ref|ZP_05836745.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261758385|ref|ZP_06002094.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265999435|ref|ZP_05466349.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|297248503|ref|ZP_06932221.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|148371591|gb|ABQ61570.1| RNA methyltransferase, TrmH family, group 1 [Brucella ovis ATCC
           25840]
 gi|225617670|gb|EEH14715.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
           Cudo]
 gi|237788911|gb|EEP63122.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
           2308 A]
 gi|260095706|gb|EEW79583.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260151620|gb|EEW86714.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155793|gb|EEW90873.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261738369|gb|EEY26365.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|263093946|gb|EEZ17880.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175672|gb|EFH35019.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
          Length = 291

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 125/257 (48%), Positives = 178/257 (69%), Gaps = 2/257 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 27  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 86

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 87  VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 146

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V    +   A K
Sbjct: 147 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 206

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 207 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 266

Query: 250 SRQSSRRNNVLLQKTEK 266
           + +  R +     +  K
Sbjct: 267 TPKKPRGSGAPEGRARK 283


>gi|317049146|ref|YP_004116794.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316950763|gb|ADU70238.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
          Length = 247

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 9/250 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    L+ L LVNP    P  +A S +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLSNLYLVNPLVK-PDSQAISLAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EAIA    +  T+AR+R+    +L  +E  I   E       V ++FGRER G
Sbjct: 61  QIVDTLDEAIAGCSLVVGTSARSRSLPWPMLDSRECGIKSVEEGQQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPA 187
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + + EK   +    ++   
Sbjct: 120 LTNEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLDAQEKATPQPQFAESPYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  ++E  +   G+ R      +++  L  ++ R    R+E+ +LRG++++ +
Sbjct: 180 LVDDLERFYQHMEQMMLNSGFIR-EGNPGQVMSKLRRLYTRARPERDELNILRGMLASFE 238

Query: 248 KFSRQSSRRN 257
           K  R+ S  N
Sbjct: 239 K--RKGSEGN 246


>gi|90021058|ref|YP_526885.1| RNA methyltransferase [Saccharophagus degradans 2-40]
 gi|89950658|gb|ABD80673.1| RNA methyltransferase TrmH, group 1 [Saccharophagus degradans 2-40]
          Length = 267

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 7/263 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           ++     I++V+     NIG  ARAM N  L +L LV+P+  +P+EKA   +A+A  V+D
Sbjct: 5   DNFNRIRIVMVNTTHPGNIGGAARAMKNMGLGKLYLVDPKQ-YPAEKAVWRAASATDVLD 63

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V  +L EAIAD   +  T+AR R     +L P+E           G+ V I+FGRE 
Sbjct: 64  DAVVVGSLDEAIADCTLVVGTSARERRIPWPLLTPRECGDKAWAEAGKGE-VAIVFGRED 122

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----T 185
            GLTNEE+   +  +  P NP + SLNI+ A+ ++ +E     +   E      +     
Sbjct: 123 RGLTNEELQKCHYHVHIPSNPDYSSLNIAAAIQVLCYEIRMTHLAEKEGKPIHFDDWDVP 182

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PA + ++  +  +LE +L +  +   +   ++ +  +  +F R  +   E+ +LRG++++
Sbjct: 183 PAKQQDMEYYYAHLEETLAKLDFLD-LSNPRQTVTRIRRMFNRIRMDEMEISILRGMLTS 241

Query: 246 LDKFSRQSSRRNNVLLQKTEKSE 268
           +      S  +   L ++  K +
Sbjct: 242 IQNQIYHSGNKIEALNEEIAKLK 264


>gi|329897042|ref|ZP_08271814.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
 gi|328921482|gb|EGG28868.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
          Length = 258

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/259 (33%), Positives = 142/259 (54%), Gaps = 6/259 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   I+LV+P    NIG VARAM N   T L LV PR  +P E+A   +A+A  V+D  R
Sbjct: 3   ESVRIVLVEPSHPGNIGGVARAMKNMGFTNLVLVAPR-RFPDEEATWRAASAADVLDGAR 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V + ++EAIAD HF+  T+AR R     +L  + AA+ +      GQ V ++FGRE  GL
Sbjct: 62  VVATVEEAIADCHFVVGTSARERRIPWPILDSRRAALQIRGEAARGQ-VAMLFGREDRGL 120

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTP-ATK 189
           TN+E+ L +  ++ P +  + SLN++ AV ++ +E    ++     E+  +E + P ATK
Sbjct: 121 TNDELKLCDLHVNVPTDEAYRSLNLAMAVQILCYELRMQTLYDSLPERADEEWDAPFATK 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             +  F ++LE +L +  +  P    ++++  L  ++ R  +   E+ +LRG+++   K 
Sbjct: 181 EAMQRFYEHLEQTLIDIEFLDP-SAPRQLMTRLQRLYNRMRIDEMELNILRGMLTETQKV 239

Query: 250 SRQSSRRNNVLLQKTEKSE 268
             + S     L QKT+  E
Sbjct: 240 VFERSALRAKLNQKTDDDE 258


>gi|300717963|ref|YP_003742766.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299063799|emb|CAX60919.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 242

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAIALAAGASDVIGEA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R+    +L P+E  I   +       V ++FGRER G
Sbjct: 61  HIVDTLDEALAGCSLVVGTSARSRSLPWPMLDPRECGIKSVQEGQQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + S E  +   E++     
Sbjct: 120 LTNEELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAFLQSQETVQPEYEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  ++E  +   G+ R      +++  +  +F R    R+E+ +LRG++S+L K
Sbjct: 180 DDLERFYQHMEQMMTHSGFIR-EGSPGQVMSKMRRLFTRARPERDELNILRGMLSSLQK 237


>gi|163868314|ref|YP_001609523.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017970|emb|CAK01528.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 131/261 (50%), Positives = 178/261 (68%), Gaps = 2/261 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GP+IILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKAR++++ AD VI
Sbjct: 9   ENLTNGPIIILVEPQLPENIGMVARAMANFGLSKLRLVKPRETFPNEKARAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++  +F  L+++IADLH+++ATTAR R  FK+V +  EAA VL +R   G   GI+FGRE
Sbjct: 69  NNAVIFDTLRDSIADLHYVFATTARERCGFKTVKSAVEAANVLRQRENIGHKTGIVFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186
           RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+  + +         +  P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLENVSDTAFRAPEMEP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K     FL  LE +L+ RGYFRP E+K+ ML +L S+F R      EV LLRGI+S+L
Sbjct: 189 ANKTMFHGFLSQLEEALDIRGYFRPRERKEVMLANLRSVFTRANFSESEVRLLRGIISSL 248

Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
           D FS Q  R +    ++  + 
Sbjct: 249 DHFSPQYPRGSRAPQERDRQK 269


>gi|291618423|ref|YP_003521165.1| YfhQ [Pantoea ananatis LMG 20103]
 gi|291153453|gb|ADD78037.1| YfhQ [Pantoea ananatis LMG 20103]
 gi|327394816|dbj|BAK12238.1| tRNA/rRNA methyltransferase YfhQ [Pantoea ananatis AJ13355]
          Length = 248

 Score =  313 bits (802), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 9/251 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A S +A A  VI   
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVK-PDSQAISLAAGASDVIGEA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  +L EAIA    +  T+AR+R+    +L  +E  +   E       V ++FGRER G
Sbjct: 61  KIVDSLDEAIAGCSLVVGTSARSRSLPWPMLDARECGVKSIEEGQQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK-- 189
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E    +    A+   
Sbjct: 120 LTNDELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVRMAWLQAQENQTPKPQYDASPYP 179

Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              +L  F  ++E  + E G+ R      +++  L  ++ R    R+E+ +LRG++S+ +
Sbjct: 180 LVDDLERFYQHMENMMLESGFIREA-NPGQVMSKLRRLYTRARPERDELNILRGMLSSFE 238

Query: 248 KFSRQSSRRNN 258
           K  R+ +R + 
Sbjct: 239 K--RKGTRTDG 247


>gi|238795106|ref|ZP_04638697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           intermedia ATCC 29909]
 gi|238725554|gb|EEQ17117.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           intermedia ATCC 29909]
          Length = 257

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 9/257 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI +  +
Sbjct: 4   NIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNATI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+A    +  T+AR+R     +L P+E  +  +        V ++FGRER GLT
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVR-SAHEAEHAPVALVFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPATK 189
           N+E+   +  ++ P NP + SLN++ AV ++ +E     +   +        E+      
Sbjct: 122 NDELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAFLDRQQATAPAIEEEEAPYPLV 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE  L   G+ R      +++  L  +F R     +E+ +LRG++++++K 
Sbjct: 182 DDLERFYLHLEQVLSHTGFIRQAH-PGQIMSKLRRLFTRARPEAQELNILRGMLTSIEKQ 240

Query: 250 SR--QSSRRNNVLLQKT 264
            +  Q    N+ L  K 
Sbjct: 241 DKYPQHDAGNSALDNKK 257


>gi|110633621|ref|YP_673829.1| RNA methyltransferase [Mesorhizobium sp. BNC1]
 gi|110284605|gb|ABG62664.1| RNA methyltransferase, TrmH family, group 1 [Chelativorans sp.
           BNC1]
          Length = 262

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 134/249 (53%), Positives = 181/249 (72%), Gaps = 1/249 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP I+LV+PQLGENIGMVARAM NF L +LRLV PRDGWP+EKAR++++ AD VID+ 
Sbjct: 12  AEGPAIVLVEPQLGENIGMVARAMANFGLGELRLVKPRDGWPNEKARAAASRADHVIDAT 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VF +L  A+ADL+F+YATTAR R+NFK V  P EA + L  R  +GQ  GI+FGRERWG
Sbjct: 72  KVFDDLAGAVADLNFLYATTARPRDNFKPVRGPVEATLQLRARHAAGQRTGILFGRERWG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+A+++ I++FPVNP F SLN++QAVLLM +E ++         V  ++ PA +  
Sbjct: 132 LTNEEVAVADEIVTFPVNPAFASLNVAQAVLLMSYEWLKAGG-EGVAPVSPEHVPAPREH 190

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L S +DYL+  L ERGYFR  +KK KM D+L ++F RP    EE+ +LRG++ +L+KFS 
Sbjct: 191 LNSLMDYLDRVLSERGYFRNEDKKPKMFDNLRALFTRPGFTVEELAVLRGVLVSLEKFSP 250

Query: 252 QSSRRNNVL 260
           +  R +   
Sbjct: 251 KKPRGSGAP 259


>gi|118588605|ref|ZP_01546013.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
           12614]
 gi|118438591|gb|EAV45224.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
           12614]
          Length = 270

 Score =  312 bits (801), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 123/257 (47%), Positives = 170/257 (66%), Gaps = 3/257 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +AK P +IL +PQLGENIG  ARAM NF L  LR+VNPRDGWPSEKAR+S++ AD VID 
Sbjct: 15  TAKPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARASASRADHVIDK 74

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+VF +++ AIADL F++ATTAR+R   K V  P EAA    E    G   G +FGRERW
Sbjct: 75  VQVFDSVEAAIADLQFVFATTARSREVPKPVRGPDEAARKSVELGEQGAATGYLFGRERW 134

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPAT 188
           GL NEE+ALS+ I++ PV+P F SLNI+QAVL+  +E  + +   +   +  ++   PA 
Sbjct: 135 GLNNEEVALSDEIVTLPVDPDFASLNIAQAVLVCAYEWRKIATAGALPFLLSEDVHPPAK 194

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K ELL F ++LE +L++  +FRP E++  M+  L +IF + EL  +EV  LRG+V++L+K
Sbjct: 195 KDELLRFFEHLEGALDKATFFRPPERRPHMVRTLRNIFQKAELTDQEVRALRGVVASLEK 254

Query: 249 FSRQSSRRNNVLLQKTE 265
                 R++       E
Sbjct: 255 -RETRPRKDRSGSGSEE 270


>gi|114563597|ref|YP_751110.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114334890|gb|ABI72272.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           frigidimarina NCIMB 400]
          Length = 240

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 4/237 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  PR   P  ++ + +A A  ++ ++
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRAE-PDGQSIALAAGASDILKNL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L+EAIAD   + AT+AR+R     +L P+EA + L +   +G  V I+FGRE  G
Sbjct: 61  TRVDSLEEAIADCSLVIATSARSRTLDWPMLDPREAGLKLTQESLNG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+      ++ P NP + SLN++QAV ++ +E     +  +E        P T  E
Sbjct: 120 LSNEELQKCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQTETPAVTDEYPLTS-E 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L  F  +LE +L + G+        +++  L  ++ R  +   E+ +LRGI++++DK
Sbjct: 179 LERFFVHLESTLSKTGFVIKNH-PGQVMTKLRRLYTRARIEAPEMNILRGILTSIDK 234


>gi|107103337|ref|ZP_01367255.1| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2]
          Length = 251

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 11/248 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+     NIG  ARAM N  L+QL LV P + +P   A + ++ A  ++D+ RV   L
Sbjct: 2   VLVNTSHPGNIGGAARAMKNMGLSQLVLVQP-ESFPHGDAVARASGATDILDAARVVDTL 60

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +EA+     +  T+AR+R     +L P+E A    E + +   V ++FGRE  GLTNEE+
Sbjct: 61  EEALIGCSVVLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLTNEEL 120

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ---------NTPAT 188
                 +  P +P F SLN++ AV ++ +E     + +  K  K +             T
Sbjct: 121 QRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVRMAWLAAQGKPTKMEKFESTSMLNTELVT 180

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             EL  +  +LE +L + G+  P EK + ++  L  ++ R  + + E+ +LRGI++   K
Sbjct: 181 ADELELYYAHLERTLIDIGFLDP-EKPRHLMSRLRRLYGRSAISKLEMNILRGILTETQK 239

Query: 249 FSRQSSRR 256
            +R  S +
Sbjct: 240 VARGLSYK 247


>gi|253988841|ref|YP_003040197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780291|emb|CAQ83452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
           asymbiotica]
          Length = 259

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 5/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     N+G  ARAM    LT L LVNP    P   A + SA A  VI S 
Sbjct: 20  LENIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPLVQ-PDSHAIALSAGASDVIGSA 78

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +L +A+A    +  T+AR+R     ++ P+E       +      V I+FGRER G
Sbjct: 79  TIVDSLDKALAGCELVIGTSARSRTLSWPMVEPRECGERSV-QAAEHVPVAIVFGRERVG 137

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +   +K     ++      
Sbjct: 138 LTNEELQKCHFHLNIPTNPEYSSLNLAMAVQLVSYEIRMAYLARQDKVEPAADETEYPLV 197

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++  F  +LE  L + G+ R      ++++ L  +F R     +E+ +LRGI+++++K+
Sbjct: 198 DDMERFYHHLEHVLHDSGFIRKAH-PGQIMNKLRRLFTRARPEMQELNILRGILTSVEKW 256

Query: 250 SRQ 252
           +++
Sbjct: 257 AKK 259


>gi|308050472|ref|YP_003914038.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
 gi|307632662|gb|ADN76964.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
          Length = 244

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 4/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    L+QL L  P+   P  ++ + +A A  ++ ++
Sbjct: 2   LSNVRIVLVGTTHPGNIGSAARAMKTMGLSQLFLAEPKVA-PDGQSIALAAGASDLLKNL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  +L  AIAD   +  T+AR+R     +L  +EA + L     +G  V ++FGRE  G
Sbjct: 61  VVTDDLASAIADCSLVIGTSARSRTLSWPMLDAREAGVKLASEANTG-PVALVFGRENSG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATKG 190
           L+NEE+ + +  +  P NP + SLN++QAV L+ +E     +  +E+   E      T+G
Sbjct: 120 LSNEELQMCHYHVCIPANPEYSSLNLAQAVQLLSYETRMAHLAQTEQPSPEAEVEYPTQG 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++     +LE +L   G+        ++++ L  +F R    + E+ +LRG+++++DK +
Sbjct: 180 QMEGLYQHLEQTLSHTGFIIKAH-PGQVMNKLRRLFNRARPEQTELAILRGVLTSVDKTT 238

Query: 251 RQSS 254
            +  
Sbjct: 239 GRKK 242


>gi|17987077|ref|NP_539711.1| SpoU rRNA methylase family [Brucella melitensis bv. 1 str. 16M]
 gi|23502073|ref|NP_698200.1| RNA methyltransferase [Brucella suis 1330]
 gi|62290107|ref|YP_221900.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700030|ref|YP_414604.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|161619151|ref|YP_001593038.1| RNA methyltransferase [Brucella canis ATCC 23365]
 gi|163843461|ref|YP_001627865.1| RNA methyltransferase [Brucella suis ATCC 23445]
 gi|189024345|ref|YP_001935113.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225852692|ref|YP_002732925.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
 gi|254689416|ref|ZP_05152670.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|254693901|ref|ZP_05155729.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|254697551|ref|ZP_05159379.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701936|ref|ZP_05163764.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|254704481|ref|ZP_05166309.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|254706623|ref|ZP_05168451.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|254710267|ref|ZP_05172078.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|254714264|ref|ZP_05176075.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|254717700|ref|ZP_05179511.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|254730445|ref|ZP_05189023.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|256031761|ref|ZP_05445375.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|256044846|ref|ZP_05447750.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113751|ref|ZP_05454555.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|256159931|ref|ZP_05457649.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|256255162|ref|ZP_05460698.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|256257662|ref|ZP_05463198.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260168895|ref|ZP_05755706.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|260754938|ref|ZP_05867286.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758154|ref|ZP_05870502.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260761980|ref|ZP_05874323.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883948|ref|ZP_05895562.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261214190|ref|ZP_05928471.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219543|ref|ZP_05933824.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261222359|ref|ZP_05936640.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261314083|ref|ZP_05953280.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261317829|ref|ZP_05957026.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322038|ref|ZP_05961235.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261752502|ref|ZP_05996211.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755161|ref|ZP_05998870.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|265988859|ref|ZP_06101416.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991274|ref|ZP_06103831.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995110|ref|ZP_06107667.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998324|ref|ZP_06110881.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|294852531|ref|ZP_06793204.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|17982735|gb|AAL51975.1| spou family of rRNA methylases [Brucella melitensis bv. 1 str. 16M]
 gi|23348030|gb|AAN30115.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis 1330]
 gi|62196239|gb|AAX74539.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616131|emb|CAJ11174.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           family, group 1 [Brucella melitensis biovar Abortus
           2308]
 gi|161335962|gb|ABX62267.1| RNA methyltransferase, TrmH family, group 1 [Brucella canis ATCC
           23365]
 gi|163674184|gb|ABY38295.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis ATCC
           23445]
 gi|189019917|gb|ACD72639.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225641057|gb|ACO00971.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
           ATCC 23457]
 gi|260668472|gb|EEX55412.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672412|gb|EEX59233.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675046|gb|EEX61867.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873476|gb|EEX80545.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260915797|gb|EEX82658.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920943|gb|EEX87596.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260924632|gb|EEX91200.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261294728|gb|EEX98224.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297052|gb|EEY00549.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261303109|gb|EEY06606.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261742255|gb|EEY30181.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744914|gb|EEY32840.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552792|gb|EEZ08782.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766223|gb|EEZ12012.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002058|gb|EEZ14633.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661056|gb|EEZ31317.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|294821120|gb|EFG38119.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|326409214|gb|ADZ66279.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
 gi|326538923|gb|ADZ87138.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
           M5-90]
          Length = 276

 Score =  312 bits (800), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 125/257 (48%), Positives = 178/257 (69%), Gaps = 2/257 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V    +   A K
Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251

Query: 250 SRQSSRRNNVLLQKTEK 266
           + +  R +     +  K
Sbjct: 252 TPKKPRGSGAPEGRARK 268


>gi|326796538|ref|YP_004314358.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
 gi|326547302|gb|ADZ92522.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
          Length = 239

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 8/242 (3%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   I+LV+     NIG  ARAM N  L++L LV+P+  +PSE+A S ++ A  ++DS  
Sbjct: 3   ENIRIVLVNTSHPGNIGGAARAMKNMGLSKLVLVSPK-VFPSEEAVSRASGASDLLDSAV 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V   L+EAI+D   +  T+AR R+    +L P+E+A +  +    G     +FGRE  GL
Sbjct: 62  VVDTLEEAISDCQLVIGTSARERHIPWPLLDPRESAELTYK---EGLETAFVFGREDRGL 118

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN---TPATK 189
           TNEE+   +  +  P    F SLN++ AV ++ +E     +   +  + +       AT 
Sbjct: 119 TNEELQRCHYHVHIPSVEAFSSLNLATAVQVIAYELRMKLLSLGDSPIVQSKWDVPAATS 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++   L++LE  L E  +  P    ++++     ++ R ++ ++E+ +LRG+++ ++K 
Sbjct: 179 EQMDHMLEHLENVLGEIEFLDPK-APRQVMTRFRRLYQRAQMDQQEMGMLRGVLTAIEKQ 237

Query: 250 SR 251
            R
Sbjct: 238 CR 239


>gi|307132079|ref|YP_003884095.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
 gi|306529608|gb|ADM99538.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
          Length = 248

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G  ARAM    LT L LVNP    P  +A S SA A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVK-PDSQAISLSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +L +A+     +  T+AR+R     +L P+E  +   +       V ++FGRER G
Sbjct: 61  TIVDSLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSVQEA-QHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV ++ +E     +   ++     E++     
Sbjct: 120 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVRVAWLDRQQRGEPAHEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  +LE +L   G+ R   +  ++++ L  +F R     +E+ +LRGI+S + K
Sbjct: 180 DDLERFYQHLEETLLHTGFIRQPHQ-GQVMNKLRRLFTRARPENQELNILRGILSAITK 237


>gi|259907699|ref|YP_002648055.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224963321|emb|CAX54806.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283477553|emb|CAY73469.1| putative RNA methyltransferase [Erwinia pyrifoliae DSM 12163]
          Length = 241

 Score =  312 bits (800), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVK-PDSQAIALAAGASDVIGEA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EAI+    +  T+AR+R+    +L P+E  +   E       V ++FGRER G
Sbjct: 61  KIVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRECGLKSVEEGQQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     +  V + +   ++      
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQTQPDETPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  ++E  + + G+ R      +++  +  +F R    R+E+ +LRG++S+L+K
Sbjct: 180 EDLERFYQHMEKIMTDSGFIRAAS-PGQVMSKMRRLFTRARPERDELNILRGMLSSLEK 237


>gi|307945605|ref|ZP_07660941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
           TrichSKD4]
 gi|307771478|gb|EFO30703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
           TrichSKD4]
          Length = 293

 Score =  311 bits (799), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 115/246 (46%), Positives = 166/246 (67%), Gaps = 2/246 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P +IL +PQLGENIG  ARAM NF    LR+VNPRDGWPSEKAR++++ AD VID V+V
Sbjct: 42  PPAVILCEPQLGENIGTAARAMANFGWVDLRIVNPRDGWPSEKARAAASRADHVIDKVQV 101

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+ AIADL F++ATTAR+R   K V +P EAA  + +   SG   G IFGRERWGL 
Sbjct: 102 FDSLEAAIADLTFVFATTARSREVPKPVCSPDEAAQKVVQSGVSGLPTGYIFGRERWGLN 161

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGE 191
           NEE+AL++ I++ PV+P F SLNI+QAVL+  +E  + +   +      +E + PA K +
Sbjct: 162 NEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTATAGALPFRLDEELHPPAVKED 221

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           ++   ++LE +L+E  +FRP E++  M+  L +IF + EL  +EV  LRG+++ L++   
Sbjct: 222 VVRLFEHLESALDEVTFFRPPERRPHMVRTLRNIFQKAELTEQEVRALRGVIAALERRET 281

Query: 252 QSSRRN 257
           +  R +
Sbjct: 282 RPRRSD 287


>gi|306844095|ref|ZP_07476689.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
 gi|306275538|gb|EFM57270.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
          Length = 276

 Score =  311 bits (799), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 125/257 (48%), Positives = 178/257 (69%), Gaps = 2/257 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYGDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V    +   A K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251

Query: 250 SRQSSRRNNVLLQKTEK 266
           + +  R +     +  K
Sbjct: 252 TPKKPRGSGAPEGRARK 268


>gi|153009325|ref|YP_001370540.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561213|gb|ABS14711.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum anthropi
           ATCC 49188]
          Length = 281

 Score =  311 bits (799), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 122/257 (47%), Positives = 178/257 (69%), Gaps = 2/257 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP I+LV+PQL ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYDDLPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +  + V    +   A K
Sbjct: 132 LSNEEVGLADELVTFPVNPAFASLNIAQAVLLMSYEWMKSGLETETETVFRGPELELAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL    ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG++++LD F
Sbjct: 192 NELQGLFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVITSLDVF 251

Query: 250 SRQSSRRNNVLLQKTEK 266
           + +  R +     +  K
Sbjct: 252 TPKKPRGSGAPEGRARK 268


>gi|260598924|ref|YP_003211495.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter
           turicensis z3032]
 gi|260218101|emb|CBA32873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Cronobacter
           turicensis z3032]
          Length = 246

 Score =  311 bits (798), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 8/248 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L EA+A    +  T+AR+R     +L P+E  +           V I+FGRER G
Sbjct: 61  SIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAAH-APVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-----EQNTP 186
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + +         E+   
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVVAYEVRMAWLATQDAQAPAHAEEEETPY 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               +L  F  +LE  L   G+ R      ++++ L  +F R     +E+ +LRG+++++
Sbjct: 180 PLVDDLERFYGHLEQVLLTTGFIR-ANHPGQVMNKLRRLFTRARPESQELNILRGMLASI 238

Query: 247 DKFSRQSS 254
           +    +  
Sbjct: 239 ESSRNEKP 246


>gi|294637706|ref|ZP_06715983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
           tarda ATCC 23685]
 gi|291089136|gb|EFE21697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
           tarda ATCC 23685]
          Length = 245

 Score =  311 bits (798), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 5/241 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VRPDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  EAIA    +  T+AR+R+    +L P+E      +       V I+FGRER G
Sbjct: 61  TIVDSFDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQRAAQE-SEHAPVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
           LTN+E+   +  +  P NP + SLN++ AV ++ +E     +           +      
Sbjct: 120 LTNDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKYPPVGEEAYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L  F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++DK+
Sbjct: 180 DDLERFYSHLEQTLHHTGFIR-EKNPGQVMNRLRRLFTRARPEAQELNILRGILASIDKY 238

Query: 250 S 250
            
Sbjct: 239 H 239


>gi|163749697|ref|ZP_02156943.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
           KT99]
 gi|161330510|gb|EDQ01468.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
           KT99]
          Length = 254

 Score =  311 bits (798), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 12/255 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++   
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVQ-PDGHSIALAAGASDILKHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  ++ EAIAD   + AT+AR+R     +L P+EA   L      G  V I+FGRE  G
Sbjct: 61  VIVDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALEG-PVAIVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182
           LTNEE+   +  ++ P NP + SLN++QAV ++ +E     +   ++          V+E
Sbjct: 120 LTNEELQKCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLEHEKRELDKGRSVDYVEE 179

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           +       E  +F ++LE +L   G+    +   +++  L  +F R  L R+E+ +LRG+
Sbjct: 180 KIEYPFAKERENFFEHLESTLLGTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGM 238

Query: 243 VSTLDKFSRQSSRRN 257
           ++++DK       + 
Sbjct: 239 LTSIDKKMPPKDDKQ 253


>gi|188533164|ref|YP_001906961.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188028206|emb|CAO96064.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 241

 Score =  311 bits (798), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVK-PDSQAIALAAGASDVIGEA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EAI+    +  T+AR+R+    +L P+E  I   E       V ++FGRER G
Sbjct: 61  KIVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRECGIKSVEE-GQHAPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
           LTNEE+   +  ++   NP + SLN++ AV ++ +E     + S E    +   +     
Sbjct: 120 LTNEELQKCHYHVAIAANPDYSSLNLAMAVQIIAYEVRMAFLQSVEAPQAQCDDSPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  ++E  + + G+ R      +++  +  +F R    R+E+ +LRG++S+L+K
Sbjct: 180 DDLERFYQHMEKMMTDSGFIRAAS-PGQVMSKMRRLFTRARPERDELNILRGMLSSLEK 237


>gi|310764793|gb|ADP09743.1| tRNA/rRNA methyltransferase [Erwinia sp. Ejp617]
          Length = 241

 Score =  311 bits (797), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVK-PDSQAIALAAGASDVIGEA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EAI+    +  T+AR+R+    +L P++  +   E       V ++FGRER G
Sbjct: 61  KIVDTLDEAISGCSLVVGTSARSRSLPWPMLDPRQCGLKSVEEGQQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     +  V + +   ++      
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQPDETPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  ++E  + + G+ R      +++  +  +F R    R+E+ +LRG++S+L+K
Sbjct: 180 DDLERFYQHMEKIMTDSGFIRAAS-PGQVMSKMRRLFTRARPERDELNILRGMLSSLEK 237


>gi|88703677|ref|ZP_01101393.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
 gi|88702391|gb|EAQ99494.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
          Length = 254

 Score =  311 bits (797), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 127/241 (52%), Gaps = 6/241 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + +   I+LV+P    NIG VARAM    L +L LV P + +P E+A   +  A  V++S
Sbjct: 2   NPEHIRIVLVEPSHPGNIGAVARAMKTMGLGRLVLVAP-EQFPHEEATWRAVWARDVLES 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V   L EAIA+  F+  T AR++     VL P+ +A+ ++     G+ V I+FGRE  
Sbjct: 61  AVVVDTLDEAIAECGFVVGTCARDQRLPWPVLDPRRSALEVSANSRRGE-VAILFGREDN 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPA 187
           GL+NEE+   N  ++ P +  + SLN++ AV ++ +E    +    +    N +     A
Sbjct: 120 GLSNEELMRCNLHLAIPTSDAYSSLNLAMAVQIVCYELHMLANGDALPQTSNAEWDEPLA 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           ++  +  F  +LE +L + G+  P    +K++  L  ++ R  +   E+ +LRGI++   
Sbjct: 180 SQENIERFYVHLEETLSQIGFLNPA-APRKLMPRLRRLYNRLGMDEMELNILRGILTETQ 238

Query: 248 K 248
           K
Sbjct: 239 K 239


>gi|148979594|ref|ZP_01815599.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
 gi|145961679|gb|EDK26976.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
          Length = 242

 Score =  311 bits (797), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 5/237 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  + ++  + S 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAENAVIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D   +  ++AR+R     +L P+E A            V ++FGRER GLTNEE
Sbjct: 66  LDEAVKDCGLVVGSSARSRTLEWPMLEPRECAEKFAVE-GQKHPVALVFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +  V+S+   + Q+      EL  
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYKPQPQDEYPRHEELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           F ++LE  + +  +    +K  ++++ L  +F R     +E+  LRGI+++++K   
Sbjct: 185 FYEHLEKVIIDTQFI-SKDKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEKSKN 240


>gi|24373814|ref|NP_717857.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24348212|gb|AAN55301.1|AE015668_2 RNA methyltransferase, TrmH family, group 1 [Shewanella oneidensis
           MR-1]
          Length = 241

 Score =  311 bits (797), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 121/244 (49%), Gaps = 4/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                +ILV      NIG  ARAM    L+ L L  PR      ++ + +A A  ++  +
Sbjct: 2   LSNIRVILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEV-DGQSIALAAGASDILKHL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L+EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  G
Sbjct: 61  VKVDSLQEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTEGITG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+      ++ P NP + SLN++QAV ++ +E     +   E     +  P +  +
Sbjct: 120 LTNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQMEAPQAVEEYPLS-AD 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK   
Sbjct: 179 LERFFVHLESTLSSTGFIIKNH-PGQVMTKLRRMFSRARIESQEMNILRGILTSIDKVVG 237

Query: 252 QSSR 255
              +
Sbjct: 238 NKQK 241


>gi|212634526|ref|YP_002311051.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
 gi|212556010|gb|ACJ28464.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
          Length = 254

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 12/246 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  P+   P   + + +A A  ++   
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSSLYLAEPKVA-PDGHSVALAAGASDILKHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +++EAIAD   + AT+AR+R     +L P+EA   L E   +G  V I+FGRE  G
Sbjct: 61  VTVDSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVESALTG-PVAIVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182
           LTNEE+   +  ++ P NP + SLN++QAV ++ +E     +   +K          V+ 
Sbjct: 120 LTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQKEFESNKLEGFVEP 179

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            N      E  +F +++E +L    +    +   +++  L  +F R  + R+E+ +LRGI
Sbjct: 180 DNEYPFSKERENFFEHMENTLLSTNFIVK-QHPGQVMTKLRRLFSRARIERQEMNILRGI 238

Query: 243 VSTLDK 248
           ++++DK
Sbjct: 239 LTSVDK 244


>gi|84387612|ref|ZP_00990629.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|218708627|ref|YP_002416248.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
 gi|84377457|gb|EAP94323.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|218321646|emb|CAV17598.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
          Length = 242

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 5/237 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  + ++  + S 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAENATIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D   +  ++AR+R     +L P+E              V ++FGRER GLTN+E
Sbjct: 66  LDEAVKDCGLVVGSSARSRTLEWPMLEPRECGQKFAVE-GQKHPVALVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +  V+S+   ++Q+      EL  
Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           F ++LE  + +  +    +K  ++++ L  +F R     +E+  LRGI+++++K   
Sbjct: 185 FYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEKSKN 240


>gi|86145581|ref|ZP_01063911.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|85836552|gb|EAQ54678.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
          Length = 242

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  + ++  + S 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAENATIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D   +  ++AR+R     +L P+E              V ++FGRER GLTN+E
Sbjct: 66  LDEAVKDCGLVVGSSARSRTLEWPMLEPRECGQKFAVE-GQKHPVALVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +  V+S+   ++Q+      EL  
Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLDMVASQYQPQQQDEYPRHEELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + +  +    +K  ++++ L  +F R     +E+  LRGI+++++K
Sbjct: 185 FYEHLEKVIIDTQFISK-DKPGQVMNKLRRLFSRARPELQEINTLRGILTSIEK 237


>gi|85059749|ref|YP_455451.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123519073|sp|Q2NS29|TRMJ_SODGM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|84780269|dbj|BAE75046.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 255

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 5/240 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     NIG  ARAM    L+ L LVNP    P  +A + SA A  +I +  V
Sbjct: 4   NIRIVLVETSHTGNIGSTARAMKTMGLSNLYLVNPL-HKPDAQAIALSAGASDIIGNASV 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL +A+A    +  T+AR+R     +L P+E  +   +       V ++FGRER GLT
Sbjct: 63  VDNLDQALAGCSLVVGTSARSRTLPWPMLEPRECGVKSIQEAAQ-APVALLFGRERVGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGE 191
           N+E+   +  +  P N  + SLN++ AV ++ +E     + S  ++  V+E +      +
Sbjct: 122 NDELQKCHFHVQIPANHEYSSLNLAMAVQILAYEVRVAWLDSQRQDATVQEASVYPVAED 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  F  +LE  L   G+ R       +++ L  +F R     +E+ +LRG++++++   +
Sbjct: 182 LERFYQHLEQVLSGTGFIRRAH-PGLVMNKLRRLFNRARPESQELNILRGMLTSIEHTQK 240


>gi|294140359|ref|YP_003556337.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293326828|dbj|BAJ01559.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
           DSS12]
          Length = 252

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 12/246 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  P+   P   + + +A A  ++   
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVQ-PDGHSVALAAGASDILKHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  ++ EAIAD   + AT+AR+R     +L P+EA   L      G  V I+FGRE  G
Sbjct: 61  VIVDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALDG-PVAIVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182
           L+NEE+   N  +S P NP + SLN++QAV ++ +E     +   ++          V+E
Sbjct: 120 LSNEELQKCNYHVSIPANPEYTSLNLAQAVQIICYEARVAHLEHEKREFEKGRPADYVEE 179

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           +       E  +F  +LE +L   G+    +   +++  L  +F R  L R+E+ +LRG+
Sbjct: 180 KIEYPFAKERENFFGHLESTLLGTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGM 238

Query: 243 VSTLDK 248
           ++++DK
Sbjct: 239 LTSIDK 244


>gi|153000909|ref|YP_001366590.1| RNA methyltransferase [Shewanella baltica OS185]
 gi|160875617|ref|YP_001554933.1| RNA methyltransferase [Shewanella baltica OS195]
 gi|217973134|ref|YP_002357885.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
 gi|304408987|ref|ZP_07390608.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS183]
 gi|307302990|ref|ZP_07582745.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           BA175]
 gi|151365527|gb|ABS08527.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS185]
 gi|160861139|gb|ABX49673.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS195]
 gi|217498269|gb|ACK46462.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS223]
 gi|304352808|gb|EFM17205.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS183]
 gi|306913350|gb|EFN43772.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           BA175]
 gi|315267805|gb|ADT94658.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS678]
          Length = 242

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 3/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++  +
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRVE-PDGHSIALAAGASDILKHL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L EAIAD   + AT+AR+R     +L P+EA + L      G  V I+FGRE  G
Sbjct: 61  VKVDSLAEAIADCSLVIATSARSRTLDWPMLEPREAGVRLATEALKG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+      ++ P NP + SLN++QAV ++ +E     +   E   +E        +
Sbjct: 120 LSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQKEVAEEELTEYPLAAD 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
              F  +LE +L   G+        +++  L  +F R  +  +E+ +LRGI+++++K + 
Sbjct: 180 QERFFAHLETTLLSTGFIIKNH-PGQVMMKLRRLFSRARIESQEMNILRGILTSIEKVTG 238

Query: 252 QSSR 255
              +
Sbjct: 239 SKDK 242


>gi|328543187|ref|YP_004303296.1| tRNA/rRNA methyltransferase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412933|gb|ADZ69996.1| Probable tRNA/rRNA methyltransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 289

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 117/264 (44%), Positives = 171/264 (64%), Gaps = 3/264 (1%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
               L    + P +IL +PQLGENIG  ARAM NF L  LRLVNPRDGWPS+KAR++++ 
Sbjct: 8   RDEALAVDIRPPAVILCEPQLGENIGTAARAMANFGLVDLRLVNPRDGWPSDKARAAASR 67

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           AD VID+V+VF +L+ A+ADL F++ATTAR+R   K V  P EAA  +     +G   G 
Sbjct: 68  ADHVIDAVQVFDSLEAAVADLSFVFATTARSREVAKPVRGPDEAAATVVGYGATGLATGY 127

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--K 181
           +FGRERWGL N+E+AL++ I++ PV+P F SLNI+QAVL+  +E  + +   +      +
Sbjct: 128 LFGRERWGLNNDEVALADEIVTLPVDPAFASLNIAQAVLVCAYEWRKTATRGALPFALDE 187

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
           + N PA K +LL F ++LE +L+  G+ RPVE++  M+ ++ +IF +  L  +EV  LRG
Sbjct: 188 DANPPAGKADLLRFFEHLEGALDGAGFLRPVERRPHMVRNIRNIFQKARLTDQEVKTLRG 247

Query: 242 IVSTLDKFSRQSSRRNNVLLQKTE 265
           IV+ L++      R++      T+
Sbjct: 248 IVAALER-RPSRPRKDMPPEDATD 270


>gi|256061276|ref|ZP_05451426.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261325283|ref|ZP_05964480.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261301263|gb|EEY04760.1| RNA methyltransferase [Brucella neotomae 5K33]
          Length = 276

 Score =  310 bits (795), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 124/257 (48%), Positives = 177/257 (68%), Gaps = 2/257 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GP IILV+PQL ENIGMVARAM NF L +LRLVNPR+ + SEKAR++++ AD VID+ 
Sbjct: 12  AEGPAIILVNPQLPENIGMVARAMANFGLAELRLVNPREEFLSEKARAAASKADHVIDNA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+ +L  AIADL+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+G
Sbjct: 72  VVYDDLPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATK 189
           L+NEE+ L++ +++FPVNP F SLNI+QAVLLM +E M++ + +    V    +   A K
Sbjct: 132 LSNEEVGLADELLTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPK 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F ++LE +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F
Sbjct: 192 EELHGFFNHLEEALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVF 251

Query: 250 SRQSSRRNNVLLQKTEK 266
           + +  R +     +  K
Sbjct: 252 TPKKPRGSGAPEGRARK 268


>gi|120598674|ref|YP_963248.1| RNA methyltransferase [Shewanella sp. W3-18-1]
 gi|146293248|ref|YP_001183672.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
 gi|120558767|gb|ABM24694.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp.
           W3-18-1]
 gi|145564938|gb|ABP75873.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           putrefaciens CN-32]
 gi|319426238|gb|ADV54312.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           putrefaciens 200]
          Length = 241

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 4/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  PR   P  ++ + +A A  ++  +
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVE-PDGQSIALAAGASDILKHL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  G
Sbjct: 61  VKVDSLAEAIADCSLVIATSARSRTLDWPMLEPREAGQKLVTESVTG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+      ++ P NP + SLN++QAV ++ +E     +   E   +    P    +
Sbjct: 120 LSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAGIESAQEPTEYPLAADQ 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
              F  +LE +L   G+        +++  L  +F R  +  +E+ +LRGI++++DK   
Sbjct: 180 -ERFFVHLENTLFSTGFIIKNH-PGQVMTKLRRLFSRARIESQEMNILRGILTSIDKVVS 237

Query: 252 QSSR 255
              +
Sbjct: 238 NKQK 241


>gi|120554047|ref|YP_958398.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120323896|gb|ABM18211.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
           VT8]
          Length = 287

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 144/289 (49%), Gaps = 24/289 (8%)

Query: 1   MTPYAPQLQNSAK-----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MT   P L   +         I+LV+     NIG VARAM N  L  L LVNP+  +P E
Sbjct: 1   MTMNKPALPVESTDTYHDQVRIVLVETTHSGNIGAVARAMKNMGLGNLWLVNPK-SFPDE 59

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            + + +++A  V+D  +V S+L EA++D   +  T+AR R     V++P +AA+   E  
Sbjct: 60  ASYARASSASDVLDRAQVVSSLDEALSDCVLVMGTSARGRKVPWPVISPPQAAVTAAENS 119

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             G  V ++FGRE  GL+NEE+   +  I  P NP + SLN++ AV ++ +E   + +  
Sbjct: 120 ARG-PVALVFGRESNGLSNEELQRCHYHIHIPSNPDYSSLNLAMAVQVVCYELRMHYLRG 178

Query: 176 --------------SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
                            +      PAT  ++  F  +LE  L++  + R  E  ++++  
Sbjct: 179 LEEVESSPYLESMVEPGDRGWDVPPATVNDVEGFFGHLEQVLQDVDFHR-RENPRQLMTR 237

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKF--SRQSSRRNNVLLQKTEKSE 268
           L  +F R +L + E+ +LRGI++++ K   +R+   RN       ++ +
Sbjct: 238 LRRLFQRAKLDQMEINILRGILTSVQKATVAREGVGRNTTAAGAVDEGQ 286


>gi|126174613|ref|YP_001050762.1| RNA methyltransferase [Shewanella baltica OS155]
 gi|125997818|gb|ABN61893.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS155]
          Length = 242

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 3/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++  +
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRVE-PDGHSIALAAGASDILKHL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L EAIAD   + AT+AR+R     +L P+EA + L     +G  V I+FGRE  G
Sbjct: 61  VKVDSLAEAIADCCLVIATSARSRTLDWPMLEPREAGVRLATEALNG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+      ++ P NP + SLN++QAV ++ +E     +   E   +E        +
Sbjct: 120 LSNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRIAHLAQKEVAEEELTEYPLAAD 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
              F  +LE +L   G+        +++  L  +F R  +  +E+ +LRGI+++++K + 
Sbjct: 180 QERFFAHLETTLLSTGFIIKNH-PGQVMMKLRRLFSRARIESQEMNILRGILTSIEKVTG 238

Query: 252 QSSR 255
              +
Sbjct: 239 SKDK 242


>gi|170726126|ref|YP_001760152.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169811473|gb|ACA86057.1| RNA methyltransferase, TrmH family, group 1 [Shewanella woodyi ATCC
           51908]
          Length = 254

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 12/256 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++   
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVE-PDGHSVALAAGASDILKHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               ++ EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  G
Sbjct: 61  VTVDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVSSALTG-PVAIVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---------VKE 182
           LTNEE+   N  ++ P NP + SLN++QAV ++ +E     +   +++         V+ 
Sbjct: 120 LTNEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPADYVEP 179

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           +N      E  +F  +LE +L   G+    +   +++  L  +F R  L ++E+ +LRG+
Sbjct: 180 ENEYPFASERENFFTHLEKTLLNTGFIVK-QHPGQVMTKLRRLFSRARLEKQEMNILRGM 238

Query: 243 VSTLDKFSRQSSRRNN 258
           ++++DK      +   
Sbjct: 239 LTSIDKKVATKDKSET 254


>gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297]
 gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297]
          Length = 254

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 126/251 (50%), Gaps = 8/251 (3%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +      ++LV      NIG  ARAM       L LV P+  +PS+ A + ++ A  +
Sbjct: 7   LPDDIAQTKVVLVHTSHSGNIGSAARAMKTMGFHNLVLVAPK-TFPSDDAIAMASGATDI 65

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++   V   L+EA+AD  F+   +AR+RN    ++ P++ A      +     V ++ GR
Sbjct: 66  LEQAVVVETLEEAVADCGFVVGASARSRNLPWPLVHPRQMAEQALA-LPDNTRVALVLGR 124

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKE 182
           ER GLTN+E+A  +  ++ P NP + SLN++ AV ++ +E   ++++S+ +      V+ 
Sbjct: 125 ERSGLTNDELARCHCHVNIPANPDYSSLNVAAAVQVLCYELRMSAVLSTGEETPLWGVEW 184

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
              PAT G + S   + E  L +  +  P    + ++  +  +  + +    E  +LRG+
Sbjct: 185 DQPPATAGAMESLFAHWERVLVDIDFLDP-TNPRTLMSKIRRLMAKAQPDEVEANILRGM 243

Query: 243 VSTLDKFSRQS 253
           +S + K  R+ 
Sbjct: 244 LSHVQKHLRKP 254


>gi|242240171|ref|YP_002988352.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
 gi|242132228|gb|ACS86530.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
          Length = 244

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 5/237 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G  ARAM    L++L LVNP    P  +A S +A A  VI   
Sbjct: 2   LENIRIVLVETSHTGNMGSTARAMKTMGLSRLFLVNPLVK-PDSQAISLAAGASDVISHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L +A+     +  T+AR+R     +L P+E   VL+        V I+FGRER G
Sbjct: 61  TIVETLDQALEGCSLVIGTSARSRTLQWPMLEPRECG-VLSAEEARHAPVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTN+E+   +  ++ P NP + SLN++ AV L+ +E     +  + +E+   E++     
Sbjct: 120 LTNDELQKCHYHVAIPANPEYSSLNLAMAVQLLSYEIRVAWLDNLKAEEPAYEESPYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            +L  F  +LE +L + G+ R    + +++  L  +F R     +E+ +LRGI+S++
Sbjct: 180 DDLERFYQHLEQTLLQTGFIR-HSHQGQVMHKLRRLFTRARPESQELNILRGILSSI 235


>gi|237808766|ref|YP_002893206.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
           9187]
 gi|237501027|gb|ACQ93620.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
           9187]
          Length = 243

 Score =  309 bits (792), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 5/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     NIG  ARAM    L+QL LV+P    P EK+ + +A A+ ++ ++
Sbjct: 3   LENIRIILVNTSHTGNIGSAARAMKTMGLSQLVLVDP-VQPPDEKSTALAAGANDILANL 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R+   L EAI+D   +   +AR+R     +L P++A   L +     + V ++FGRER G
Sbjct: 62  RIVPTLAEAISDCSLVIGASARSRTLAWPMLDPRQAGQQLADGAL-NKTVALVFGRERTG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV  + +E   + +   E  V    +N    +
Sbjct: 121 LTNEELQQCHYHVNIPANPEYSSLNVAMAVQTLCYEIRMSWLAQQETVVSPADENEYPPQ 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             +  F  +LE +L +  +         ++  L  +F R      E+ +LRGI++++ K 
Sbjct: 181 ASMELFYTHLEETLRQTQFLHSDH-PGHVMMRLRRMFTRLRPDNNELNILRGILTSVQKS 239

Query: 250 SRQS 253
           SR S
Sbjct: 240 SRNS 243


>gi|317490852|ref|ZP_07949288.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920399|gb|EFV41722.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 257

 Score =  308 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI + 
Sbjct: 16  LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVK-PDSQAIALSAGASDVIGNA 74

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +     EAIA    +  T+AR+R+    +L P+E     +        V I+FGRER G
Sbjct: 75  TIVDTFDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQR-SAMESEHAPVAIVFGRERVG 133

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTNEE+   +  ++ P NP + SLN++ AV ++ +E     +  +++ + V E+      
Sbjct: 134 LTNEELQKCHYHVAIPANPEYSSLNLAMAVQIISYEIRVAHLDRIAAHEPVPEEEPYPLV 193

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  +LE +L   G+ RP      ++  L  +F R     +E+ +LRGI+++++K
Sbjct: 194 DDLERFYAHLEETLHATGFIRPTH-PGNIMSRLRRLFTRARPEAQELNILRGILASIEK 251


>gi|323499943|ref|ZP_08104902.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
           21326]
 gi|323315184|gb|EGA68236.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
           21326]
          Length = 241

 Score =  308 bits (791), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L LV+P+     E+A + +A A  + ++ 
Sbjct: 2   LNNVKVVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSI-DEQALALAAGASDIAENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + S+L EA+AD   +  ++AR+R     +L P+E      E       V ++FGRER G
Sbjct: 61  TIVSSLAEAVADCALVVGSSARSRTLEWPMLEPRECGQKFVEE-GQNAPVALVFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATK 189
           LTN+E+   +  +  P NP + SLN++ AV  + +E     +   ++    +EQ+     
Sbjct: 120 LTNDELQTCHFHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLEKEQQQYTPQEQSEYPRH 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            EL  F ++LE       +    E+  K+++ L  +F R     +E+ +LRGI+++++K
Sbjct: 180 KELELFFEHLEKVAVSTQFI-SEEQPGKVMNKLRRLFNRARPEAQELNILRGILTSIEK 237


>gi|292489067|ref|YP_003531954.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292900195|ref|YP_003539564.1| tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200043|emb|CBJ47168.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291554501|emb|CBA22048.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312173223|emb|CBX81478.1| putative RNA methyltransferase [Erwinia amylovora ATCC BAA-2158]
          Length = 241

 Score =  308 bits (789), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI   
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVK-PDSQAIALAAGASDVIGEA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA +    +  T+AR+R+    +L P+E  +   E       V ++FGRER G
Sbjct: 61  KIVDTLDEATSGCSLVVGTSARSRSLPWPMLDPRECGLKSVEEGQQ-APVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATK 189
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + S E    +  +++    
Sbjct: 120 LTNDELQKCHYHVAIAANPQYSSLNLAMAVQIIAYEVRMAYLQSVETPQAQYHESSYPLV 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  ++E  + + G+ R      +++  +  +F R    R+E+ +LRG++S+L+K
Sbjct: 180 DDLERFYQHMEKMMTDSGFIRAAS-PGQVMSKMRRLFTRARPERDELNILRGMLSSLEK 237


>gi|87119545|ref|ZP_01075442.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
 gi|86165021|gb|EAQ66289.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
          Length = 241

 Score =  308 bits (789), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 8/240 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     NIG  ARAM N  L +L LV P+  +PS++A S ++ A  ++++ 
Sbjct: 1   MNKVRIVLVNTSHPGNIGAAARAMKNMGLARLYLVAPK-VFPSDEADSRASGATDILENA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V   L+EAIAD   +  T+AR R+    ++ P++AA +++E          +FGRE  G
Sbjct: 60  VVVDTLEEAIADCQLVVGTSARERHIPWPLVDPRQAAEMVHEEQLE---SAFVFGREDRG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPAT 188
           LTNEE+   +  +  P    F SLN+  AV ++ +E     +   +  +   K     AT
Sbjct: 117 LTNEELQRCHYHVHIPSVESFSSLNLGAAVQVLAYELRMRHLALQDAPIVASKWDVPAAT 176

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L   L +LE  L +  +  P    ++++     +F R +L ++EV +LRG+++++DK
Sbjct: 177 ADQLDHMLTHLESVLSKTEFLDPK-APRQVMTRFRRLFQRAQLDQQEVGMLRGMLTSVDK 235


>gi|237748613|ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229379975|gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 257

 Score =  307 bits (788), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 128/242 (52%), Gaps = 10/242 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             ILV      N+G  ARA+     ++L LV PR  D    E+A + ++ A  ++++  +
Sbjct: 15  RFILVGTSHPGNVGAAARAIKTMGFSRLVLVKPRFGDVLKQEEAIAFASGAQDILENALI 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L+EA+ D HF  A +AR R     +  P++ A  +        N  ++FG ER+GL+
Sbjct: 75  VETLEEALEDCHFAAALSARLREFSPPIFTPRQFADNI--FTGEHANCALVFGSERYGLS 132

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-----SIVSSEKNVKEQNTPAT 188
           NE++   +A+I+ P NP + SLN++QA+ ++ +EC        ++ + ++++     PA+
Sbjct: 133 NEDVEQCHALINIPANPDYSSLNLAQAIQILAYECRMAILDKENLPTRDEHIGFHGEPAS 192

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++     +LE +L   G+  P +  KK++  L  +F R  L  EEV +LRGI   ++K
Sbjct: 193 VDQINRMFIHLETALTTIGFLNP-DNPKKLMPRLRRLFSRSSLETEEVNILRGIARQIEK 251

Query: 249 FS 250
            S
Sbjct: 252 QS 253


>gi|284006760|emb|CBA72018.1| hypothetical tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
          Length = 242

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 7/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            K   IILV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI   
Sbjct: 2   LKNIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPL-ILPDSQAIALSAGASDVIGQA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L++A+   + +  T+ R R      + P+E       +      V IIFGRER G
Sbjct: 61  TIVETLEQALLGCNLVIGTSVRARTLSWPQVTPRECGEKTIHQAI-NSPVAIIFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+      +  P NP + SLN++ AV L+ +E     +  +EK    + K++    
Sbjct: 120 LTNEELQKCQYHLHIPTNPEYGSLNLAMAVQLISYEIRMAYLAINEKKSAVDNKDKVQYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              ++  F  +LE  L   G+ R      ++++ L  +F R     +E+ +LRG++++++
Sbjct: 180 PIEDIERFYIHLEAVLNASGFIRKRH-PGQIMNKLRRLFTRAHPEVQELHILRGVLTSIE 238

Query: 248 KFSR 251
           K+ +
Sbjct: 239 KWHK 242


>gi|254496594|ref|ZP_05109462.1| RNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254354218|gb|EET12885.1| RNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 251

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 3/247 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     ++LV      NIG  ARAM    L  L LV+P+  +P  KAR  +A AD ++++
Sbjct: 2   NLNSIRVVLVATSHPGNIGSTARAMKTMGLNSLYLVSPK-SFPDYKAREMAAGADDLLET 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V   L EA+     I AT+AR R      L P  +A +++++  S Q + I+FGRE  
Sbjct: 61  AVVTETLDEALVGCQLILATSARPRGLSLPGLIPSSSAELVSKQAESTQ-IAIVFGREHA 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLTNEE+   +  I  P NP + SLN++QAV ++ +E     +    +     +  AT  
Sbjct: 120 GLTNEELLKCHYHIHIPSNPEYSSLNLAQAVQIVAYELRMKLLAPKAEVALRSDEYATAD 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+  F ++L+    E  + R     ++++  +  +F R  L + EV +LRG++S + K  
Sbjct: 180 EIEQFYEHLKEVFIEIKFLREA-NPRRLMQRVRRLFNRVNLEKMEVSILRGMLSQVQKSL 238

Query: 251 RQSSRRN 257
             +S+R 
Sbjct: 239 EWASKRG 245


>gi|254511946|ref|ZP_05124013.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
 gi|221535657|gb|EEE38645.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
          Length = 247

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 98/247 (39%), Positives = 153/247 (61%), Gaps = 1/247 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + S+ A  +
Sbjct: 1   MPSDTSQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++F +L  A+AD  +++ATTAR R   K V +P++A  +  E++ +G+ V ++FG 
Sbjct: 61  LDEAQLFDDLGRALADSTYVFATTARQRGLTKPVYSPEKAMQIAAEKVAAGEKVSVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186
           ER GL NE+IA +NAIIS PVNP + SLN+ Q VLL  +E M  +  V  E     +   
Sbjct: 121 ERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGEVVHEATDLGKGDW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+   +++ E  LEE G+F P EK + M  +L +++ R  + R +V +L G++  +
Sbjct: 181 ATGIEVEKLVEHYEDRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGVMRQM 240

Query: 247 DKFSRQS 253
            ++  + 
Sbjct: 241 VRWKEKG 247


>gi|83647158|ref|YP_435593.1| rRNA methylase [Hahella chejuensis KCTC 2396]
 gi|83635201|gb|ABC31168.1| rRNA methylase [Hahella chejuensis KCTC 2396]
          Length = 257

 Score =  307 bits (788), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 133/258 (51%), Gaps = 15/258 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     NIG  AR M N  L++L LV P D +P + A S ++ A  V+ S 
Sbjct: 2   LENVRIVLVNTSHPGNIGATARVMKNMRLSRLVLVEP-DRFPDDDATSRASGALDVLGSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERW 130
           +V ++L+EAI     +  T+AR R+    V  P++ A  + +R+ +   +V I+FGRE  
Sbjct: 61  QVVASLEEAIDGCVLVVGTSARGRSIPWPVRNPRDLADDVYDRVATTRGDVAIVFGREER 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----------- 179
           GLTN+E+   +  +  P NP + SLN++ A  ++ +E     ++ +E+N           
Sbjct: 121 GLTNDELQRCHLHVHIPSNPDYSSLNVAMAAQVICYELHMRWLLENEENQSYIQRLDGPG 180

Query: 180 -VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                   AT  E+  +L +LE +L +  +  P E  ++++  L  ++ R  L + E+ +
Sbjct: 181 DAGWDVEAATADEIERYLAHLEQTLVDIEFHDP-ENPRQLMSRLRRLYQRARLDKMEINI 239

Query: 239 LRGIVSTLDKFSRQSSRR 256
           LRGI+ +  K +    ++
Sbjct: 240 LRGILRSTQKMAGTWQKK 257


>gi|167623500|ref|YP_001673794.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167353522|gb|ABZ76135.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           halifaxensis HAW-EB4]
          Length = 251

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 125/252 (49%), Gaps = 9/252 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  P+   P   + + +A A  ++   
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVE-PDGHSIALAAGASDILKHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +++EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  G
Sbjct: 61  ITVGSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVGSALTG-PVAIVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNT 185
           LTNEE+   +  ++ P NP + SLN++QAV ++ +E     +   E  V+          
Sbjct: 120 LTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVESGVEPAPVDENDEA 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
             +  E  +F ++LE +L    +        +++  L  +F R  + R+E+ +LRGI+++
Sbjct: 180 YPSSRERENFFEHLENTLLSTNFIVKNH-PGQIMTKLRRLFSRTRIERQEMNILRGILTS 238

Query: 246 LDKFSRQSSRRN 257
           +DK   ++  ++
Sbjct: 239 IDKVVDKTETKD 250


>gi|260433569|ref|ZP_05787540.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417397|gb|EEX10656.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 247

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/247 (39%), Positives = 151/247 (61%), Gaps = 1/247 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + S+ A  +
Sbjct: 1   MPSDRPQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++F +L  A+ D  +++ATTAR R   K V +P+ A  +  +++ +G+ V ++FG 
Sbjct: 61  LDEAQLFDDLAGALGDRTYVFATTARQRGLTKPVYSPERAMQIAAQKVAAGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186
           ER GL NE+IA +NAIIS PVNP + SLN+ Q VLL  +E M  +  V  E     +   
Sbjct: 121 ERAGLENEDIAKANAIISVPVNPEYASLNLGQCVLLTAYEWMRQTGDVVHEATDLGKGDW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+   +++ E  LEE G+F P EK + M  +L +++ R  + R +V +L GI+  +
Sbjct: 181 ATGIEVEKLVEHYEQRLEEAGFFYPPEKAEGMKVNLRNLWSRMRMTRADVQMLHGIMRQM 240

Query: 247 DKFSRQS 253
            ++  + 
Sbjct: 241 VRWKDKG 247


>gi|254228672|ref|ZP_04922096.1| rRNA methylase [Vibrio sp. Ex25]
 gi|262395131|ref|YP_003286985.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
 gi|151938851|gb|EDN57685.1| rRNA methylase [Vibrio sp. Ex25]
 gi|262338725|gb|ACY52520.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
          Length = 239

 Score =  307 bits (787), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  +  + ++   
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAQNAKIVGT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+ D   +  ++AR+R     +L P+E              V ++FGRER GLTNEE
Sbjct: 66  LEEAVEDCSLVVGSSARSRTLEWPMLEPRECGEKFAVEGRK-HPVALVFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E       +  S+    E        EL  
Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQFAPNEPEEYPRHRELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + E  +    E+  ++++ L  +F R     +E+ +LRGI+++++K
Sbjct: 185 FFEHLEKVMVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGILTSIEK 237


>gi|269140161|ref|YP_003296862.1| RNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267985822|gb|ACY85651.1| RNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304559994|gb|ADM42658.1| tRNA:Cm32/Um32 methyltransferase [Edwardsiella tarda FL6-60]
          Length = 245

 Score =  306 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VRPDSQAIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  +AIA    +  T+AR+R+    +L P+E     +        V I+FGRER G
Sbjct: 61  TIVDSFDDAIAGCSLVVGTSARSRSLPWPMLEPRECGQR-SAMESEHAPVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATK 189
           LTN+E+   +  +  P NP + SLN++ AV ++ +E     +          E+      
Sbjct: 120 LTNDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLA 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++DK
Sbjct: 180 DDLERFYAHLEQTLHHTGFIR-EKNPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237


>gi|157376009|ref|YP_001474609.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157318383|gb|ABV37481.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sediminis
           HAW-EB3]
          Length = 254

 Score =  306 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 121/246 (49%), Gaps = 12/246 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  PR   P   + + +A A  ++   
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVA-PDGHSVALAAGASDILKHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               ++ EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  G
Sbjct: 61  VTVDSVAEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVASALTG-PVAIVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS---------SEKNVKE 182
           L+NEE+   N  ++ P NP + SLN++QAV ++ +E     +            E  V+ 
Sbjct: 120 LSNEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQRDFENAKPEGYVEP 179

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            N      E  +F  +LE +L   G+    +   +++  L  +F R  L R+E+ +LRG+
Sbjct: 180 VNEYPFAKERENFFSHLEETLLNTGFIVK-QHPGQVMTKLRRLFSRARLERQEMNILRGM 238

Query: 243 VSTLDK 248
           ++++DK
Sbjct: 239 LTSIDK 244


>gi|295688613|ref|YP_003592306.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295430516|gb|ADG09688.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 268

 Score =  306 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/253 (40%), Positives = 144/253 (56%), Gaps = 1/253 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MT   P        P +IL +PQL ENIG VAR M NF L  LRLV PRDGWP E+A +S
Sbjct: 1   MTDENPSASAQPAPPCVILNEPQLAENIGSVARVMANFGLYDLRLVRPRDGWPQERAWAS 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A+  +D  +VF +L+ AIADL  +YATTAR R     V  P+E+A  L E +  G+ 
Sbjct: 61  ASGANWPLDDAKVFDSLEAAIADLKLVYATTARPRETRLPVYTPRESAGHLAEEVAQGRK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKN 179
           VG++FG ER GL   +IAL  AI+S P++  F SLN++QAV +  +E          +K 
Sbjct: 121 VGLLFGGERAGLETHDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWKKF 180

Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                 PA +  LL   ++LE  L++ G++ P EKK  M+ +L     R  L  +EV   
Sbjct: 181 ELNVEEPADQATLLGLYEHLEDELDKAGFYHPPEKKPSMVRNLRVPLARARLTDQEVRTF 240

Query: 240 RGIVSTLDKFSRQ 252
           RG+++ L K   +
Sbjct: 241 RGVITALSKGRGR 253


>gi|119774427|ref|YP_927167.1| RNA methyltransferase [Shewanella amazonensis SB2B]
 gi|119766927|gb|ABL99497.1| RNA methyltransferase, TrmH family, group 1 [Shewanella amazonensis
           SB2B]
          Length = 240

 Score =  306 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 4/238 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG VARAM    L+ L L  PR   P  ++ + +A A  ++ ++
Sbjct: 2   LSNIRVVLVGTSHPGNIGSVARAMKTMGLSNLYLAEPRCE-PDGQSVALAAGACDILKNL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L EAI D   +  T+AR+R     +L P++A   L     SG  V I+FGRE  G
Sbjct: 61  TRVESLHEAIKDCALVIGTSARSRTLDWPLLDPRQAGGKLAAEAVSG-PVAIVFGRENHG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NEE+   N  +  P NP + SLN++QAV ++ +E     +    +  +    P    E
Sbjct: 120 LYNEELQACNYHVFIPANPEYMSLNLAQAVQIICYETRIAHLALENQAAEVTEYP-LMEE 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
              F ++LE +L   G+        +++  L  +F R  +   E+ +LRGI+++++K 
Sbjct: 179 NERFFEHLERTLTGTGFIIKNH-PGQVMTKLRRLFTRARIENHEMNILRGILTSIEKA 235


>gi|259416114|ref|ZP_05740034.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
 gi|259347553|gb|EEW59330.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
          Length = 249

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 147/248 (59%), Gaps = 1/248 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +      P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP++KA + ++ A  +
Sbjct: 1   MPTDRPQPHFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++  +L EA+AD  +++ATTAR R   K V +P+ A     E +  G+ V ++FG 
Sbjct: 61  LDEAQLAQDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELLRQGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL N++IA +NAII+ PVNP F SLN++Q VLL  +E         ++  +  ++  
Sbjct: 121 ERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQEEQVPDETFEIGKSDW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+ + + + E  L E GYF P EK   M     +++ R  L R +V +L G++  +
Sbjct: 181 ATGQEIEALVTHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMRLTRADVQMLHGVMRQM 240

Query: 247 DKFSRQSS 254
            ++ +  S
Sbjct: 241 VRWKQHGS 248


>gi|240850641|ref|YP_002972041.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
 gi|240267764|gb|ACS51352.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
          Length = 276

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 132/261 (50%), Positives = 176/261 (67%), Gaps = 2/261 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   GPVIILV+PQL ENIGMVARAM NF L++LRLV PR+ +P+EKA ++++ AD VI
Sbjct: 9   ENLTNGPVIILVEPQLPENIGMVARAMANFGLSKLRLVKPREMFPNEKAIAAASKADHVI 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +   +F+ L+++IADLH+++ATTAR R  FK+V +  EAA VL +R   G   GI+FGRE
Sbjct: 69  NDTVIFNTLRDSIADLHYVFATTARERCGFKTVKSAVEAASVLRQRESIGHKTGIVFGRE 128

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTP 186
           RWGL N+EI+L + II+FPVNP F SLNI+QAVLLM +E M+  +           +  P
Sbjct: 129 RWGLENDEISLVDEIITFPVNPAFASLNIAQAVLLMSYEWMKTGLEDVSDTAFRAAEMEP 188

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K     FL  LE +L  RGYFRP+E+K+ ML +L S+F R      EV LLRGI+S+L
Sbjct: 189 ANKTIFHGFLSQLEEALNIRGYFRPLERKEVMLANLRSVFTRANFSEPEVRLLRGIISSL 248

Query: 247 DKFSRQSSRRNNVLLQKTEKS 267
           D FS Q  R +    ++  K 
Sbjct: 249 DHFSPQYPRGSRAPEERDRKK 269


>gi|255264175|ref|ZP_05343517.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
           R2A62]
 gi|255106510|gb|EET49184.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
           R2A62]
          Length = 302

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/254 (34%), Positives = 149/254 (58%), Gaps = 1/254 (0%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A Q  +    P  +L+ PQ+GENIG  ARAMWNF L ++R+  PRDGWP+  A + ++
Sbjct: 49  PKAQQSASPHPQPSFVLIRPQMGENIGASARAMWNFGLDRMRIAAPRDGWPNPNAVAMAS 108

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  ++D   V+ +  +A+AD  +++ATTAR R   K V++P+ A  +  +++ +G+ V 
Sbjct: 109 GAGRLLDEALVYDSTADAVADCTYVFATTARPRGLTKPVMSPEAAMELAAQKVAAGEKVA 168

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER G+ N++IA +NAIIS PVNP F SLN++Q VLL+ +E            V+ 
Sbjct: 169 VMFGPERAGMENDDIARANAIISVPVNPDFASLNLAQCVLLVGYEWQRQVAQIEHSRVEM 228

Query: 183 -QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            +   A + E+    ++ E  L++ G+F P +K   M  +L +++ R  L + +V  L G
Sbjct: 229 IKTDWAEQIEIEKLTEHYEDRLDQAGFFYPEQKADGMKQNLRNLWSRMPLTKADVQTLHG 288

Query: 242 IVSTLDKFSRQSSR 255
           ++  + ++  +   
Sbjct: 289 VLRQMVRWKERGDE 302


>gi|315499510|ref|YP_004088313.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315417522|gb|ADU14162.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 264

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 98/251 (39%), Positives = 141/251 (56%), Gaps = 1/251 (0%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P  +     P +IL  PQ+ ENIG VAR M NF L  LR+V+PRDGWP E+A + S+ 
Sbjct: 7   APPLERPDLTLPCVILDRPQMAENIGSVARVMANFGLRDLRIVDPRDGWPQERAWAMSSG 66

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A   +D+  ++  + EAIADL+ +YATTAR R     V  P++ A         G   G+
Sbjct: 67  AHWPLDNATIYETVAEAIADLNAVYATTARPRETQLPVRTPRQCADDSYANAQQGLKTGL 126

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKE 182
           +FG ER GL   +IAL ++I++ PV+P F SLN+SQAV ++++E   +      E   K 
Sbjct: 127 LFGAERAGLETSDIALCHSIVTIPVDPAFHSLNLSQAVNIVLYEWRLKVMDTPKEAFTKN 186

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            + PA   +L     +LE  LE+ G+F P EKK+ M  +L     R +L  +EV   RG+
Sbjct: 187 MDQPAALEKLHGLYGHLEDELEKAGFFFPPEKKESMQRNLRVALNRAQLTEQEVRTWRGV 246

Query: 243 VSTLDKFSRQS 253
           V+ L K   +S
Sbjct: 247 VTALVKGRGRS 257


>gi|86138325|ref|ZP_01056899.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           MED193]
 gi|85824850|gb|EAQ45051.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           MED193]
          Length = 260

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 96/260 (36%), Positives = 150/260 (57%), Gaps = 1/260 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P  +LV PQ+GENIG  ARAMWNF L ++R+V+PRDGWP+ KA + ++ A  +
Sbjct: 1   MPSPTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   +  +L EA+ D  F++ATTAR R   K V +P+ A  +  ++I +G+ V ++FG 
Sbjct: 61  LDEAILAQDLPEALEDCSFVFATTARPRELVKPVYSPEAAMKLAAQKIKTGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL  +E    +    ++ +   +   
Sbjct: 121 ERAGLENEDIARANAIISVPVNPDFASLNLGQCVLLTAYEWQRQTQDVVDEAIDLGKTDW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  ++ + + + E  L+E G+F P  K   M     ++F R  L R +V +L G++  +
Sbjct: 181 ATGRDVEALVRHYEDRLDEAGFFFPATKAAGMKVVFRNMFSRLPLTRADVQMLHGVMRQM 240

Query: 247 DKFSRQSSRRNNVLLQKTEK 266
            ++  +           TEK
Sbjct: 241 VRWRHKDDPAQGEADPSTEK 260


>gi|238898810|ref|YP_002924492.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466570|gb|ACQ68344.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 246

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 4/243 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+     NIG VARAM    L+ L LVNP    P  K  S +A A  +I+   +
Sbjct: 7   NIRIVLVETSHPGNIGSVARAMKTMGLSDLYLVNP-SKKPDAKTISLAAGAADLIERSTL 65

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L  A+A+ + +   +AR+R      + PK+ A+    +  SG  V ++FG ER GL+
Sbjct: 66  VDTLDTALAECNLVIGASARSRTLSWPEIDPKQCALYSLHQAESG-PVALVFGCERTGLS 124

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTPATKGEL 192
           N E+   +  +  P NP + SLN++ AV ++ +E     +  +SE  + +        EL
Sbjct: 125 NLELQKCHYHVVIPTNPEYSSLNLAMAVQILSYEIRLAYLKSASESQISKIPNYPLVNEL 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F  +LE  L   G+  P  + ++M+  L  +F R  L  +E+ +LRGI++ + K    
Sbjct: 185 ECFYQHLEEVLLHVGFIHPA-RPRQMMHQLRRLFTRARLENKELNILRGILTCIKKSPIN 243

Query: 253 SSR 255
           S +
Sbjct: 244 SKK 246


>gi|269965158|ref|ZP_06179292.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
 gi|269830144|gb|EEZ84371.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
          Length = 239

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L QL LV+P+     E+  + +A A  +  + ++   
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLNQLVLVDPQCEV-DEQTLALAAGAGDIAQNAKIVGT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+ D   +  ++AR+R     +L P+E              V ++FGRER GLTNEE
Sbjct: 66  LEEAVEDCGLVVGSSARSRTLEWPMLEPRECGEKFAVEGRK-HPVALVFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E       +  S+ +  E        EL  
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHRELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + E  +    E+  ++++ L  +F R     +E+ +LRG++++++K
Sbjct: 185 FFEHLEKVMVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGVLTSIEK 237


>gi|90579380|ref|ZP_01235190.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
 gi|90440213|gb|EAS65394.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
          Length = 246

 Score =  305 bits (781), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 4/238 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    LT L LV+P          + +A A  V+++ 
Sbjct: 2   LDKIRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEV-DGHTIALAAGAADVVENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+AD  F+  ++AR+R      L P+E  I +         V I+FGRER G
Sbjct: 61  KIVKTLDEAVADCGFVVGSSARSRTLEWPQLDPRENGIKVVAESNQ-HPVAILFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKG 190
           LTNEE+   +  +  P NP + SLN++ AV  + +E     + S +   K E        
Sbjct: 120 LTNEELQKCHCHVYIPANPEYSSLNLAMAVQTITYEVRMAYLDSQKYTGKTEVEEYPRAQ 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F ++LE    +  +         ++  L  +F R    ++E+ +LRGI+S+++K
Sbjct: 180 ELEMFYEHLEKVTRQTRFINKNH-PGVVMAKLRRLFTRARPEQQELNILRGILSSVEK 236


>gi|163736384|ref|ZP_02143803.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
           BS107]
 gi|161390254|gb|EDQ14604.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
           BS107]
          Length = 280

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 93/248 (37%), Positives = 146/248 (58%), Gaps = 1/248 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P  +LV PQ+GEN+G  ARAMWNF L ++R+V PRDGWP+ KA + ++ A  +
Sbjct: 33  MPSDTPQPAFVLVRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRL 92

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  R+  +L  AI D  F++ATTAR R   K V +P+ A  +  E+I +G+ V ++FG 
Sbjct: 93  LDEARLAEDLAGAIEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGP 152

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL  +E        +       ++  
Sbjct: 153 ERAGLENEDIARANAIISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDW 212

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  ++ + +++ E  L++ G+F P +K   M     ++F R  L R +V +L GI+  +
Sbjct: 213 ASHADVDALVNHYEDRLDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQM 272

Query: 247 DKFSRQSS 254
            ++  +  
Sbjct: 273 VRWKEKRD 280


>gi|270159572|ref|ZP_06188228.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289165632|ref|YP_003455770.1| methyltransferase [Legionella longbeachae NSW150]
 gi|269987911|gb|EEZ94166.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288858805|emb|CBJ12719.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 251

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     IILV      NIG  ARAM    L  L LV P+  +P  +A+  +A AD +++S
Sbjct: 2   NLNSIRIILVATSHPGNIGSTARAMKTMGLKSLYLVKPK-SFPDLRAQEMAAGADDLLES 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V  +L  A+     I  T+AR R      L P   A ++N++      + I+FGRE  
Sbjct: 61  AVVTESLDNALVGCQLILGTSARPRGISLPGLTPSSCADLVNQQA-DNTEIAIVFGREHA 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLTNEE+   +  I+ P NP + SLN++QAV ++ +E     +    +    Q+  AT  
Sbjct: 120 GLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIITYELRMKLLAPKAEVALRQDDYATAE 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+  F ++L+    +  +       ++++  +  +F R  L + EV LLRG++S + K  
Sbjct: 180 EIEQFYEHLKEVFIKIQFL-KASNPRRLMQRVRRLFNRVSLEKMEVNLLRGMLSQVQKSI 238

Query: 251 RQSSRRN 257
             +S+R 
Sbjct: 239 EWASKRG 245


>gi|89072687|ref|ZP_01159252.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
 gi|89051507|gb|EAR56961.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
          Length = 246

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    LT L LV+P     S    + +A A  V+++ 
Sbjct: 2   LDKIRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDS-HTIALAAGAADVVENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+AD  F+  ++AR+R      L P+E  I +         V I+FGRER G
Sbjct: 61  KIVKTLDEAVADCGFVVGSSARSRTLEWPQLDPRENGIKVVAESNL-HPVAILFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKG 190
           LTNEE+   +  +  P NP + SLN++ AV  + +E     + S +   K E        
Sbjct: 120 LTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLDSQKYTGKTEVEEYPRAQ 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           EL  F ++LE    +  +         ++  L  +F R    ++E+ +LRGI+S+++K
Sbjct: 180 ELEMFYEHLEKVTRQTRFINKNH-PGVVMAKLRRLFTRARPEQQELNILRGILSSVEK 236


>gi|154253023|ref|YP_001413847.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum
           lavamentivorans DS-1]
          Length = 262

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 158/241 (65%), Gaps = 1/241 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP +ILV PQLGENIG  ARAM NF LT LRLV PRDGWP+E+AR++++ AD VID  R+
Sbjct: 17  GPAVILVAPQLGENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEVIDGARL 76

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F+   EAIADL ++ ATTAR+R+  K +L P+ AA  +     +G   G++FG ER GL 
Sbjct: 77  FATTAEAIADLDYVIATTARSRDMVKPILTPETAATQMRVAFGAGGRAGLLFGPERTGLE 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGEL 192
           N++I L++A++  PVNP F SLN++Q VLLM +E  +    +    ++  Q  PATK EL
Sbjct: 137 NDDIVLADALMMVPVNPAFASLNLAQCVLLMSYEWHKAGDATEAARIEYPQTRPATKEEL 196

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           + F  +LE  L+  G+ +P EK+  M+ +L ++F R  L  +EV  LRG+V+ L +   +
Sbjct: 197 VGFFHHLEGELDRFGFLKPPEKRPSMIRNLRNMFQRAVLTEQEVRTLRGVVAALTRRYPK 256

Query: 253 S 253
            
Sbjct: 257 G 257


>gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040]
 gi|99037457|gb|ABF64069.1| RNA methyltransferase TrmH group 1 [Ruegeria sp. TM1040]
          Length = 249

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 93/246 (37%), Positives = 149/246 (60%), Gaps = 1/246 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + ++ A  +
Sbjct: 1   MPSDRPQPDFVLVRPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++  +L EA+AD  +++ATTAR R   K V +P+ A     E +  G+ V ++FG 
Sbjct: 61  LDEAQLAQDLPEALADCTYVFATTARPRELTKPVFSPEGAMKKAAELMVQGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL N++IA +NAII+ PVNP F SLN++Q VLL  +E        + +  +  ++  
Sbjct: 121 ERAGLENDDIAKANAIITVPVNPEFASLNLAQCVLLTAYEWRRQQEQVAHETFEIGKSEW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  E+ + +++ E  L E GYF P EK   M     +++ R +L R +V +L G++  +
Sbjct: 181 ATNQEVEALVNHYEERLTEAGYFFPPEKAPGMKTVFRNLWSRMQLTRADVQMLHGVMRQM 240

Query: 247 DKFSRQ 252
            ++ ++
Sbjct: 241 VRWKQR 246


>gi|126737716|ref|ZP_01753446.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           SK209-2-6]
 gi|126721109|gb|EBA17813.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           SK209-2-6]
          Length = 248

 Score =  304 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 96/248 (38%), Positives = 147/248 (59%), Gaps = 1/248 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP++KA + ++ A  +
Sbjct: 1   MPSDTPQPSFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   +  +L  A+ D  F++ATTAR R   K V  P+ A  +  E+I SG+ V ++FG 
Sbjct: 61  LDEALLAPDLPGALEDCTFVFATTARPRELTKPVYTPEAAMRLAAEKIKSGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL NE+IA +NAIIS PVNP F SLN+ Q VLL  +E    +    E      ++  
Sbjct: 121 ERAGLENEDIAKANAIISVPVNPDFASLNLGQCVLLTAYEWRRQAEDVPEVVTDLGKSDW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  ++ + +++ E  L+E G+F P +K   M     ++F R  L R +V +L G++  +
Sbjct: 181 ATGKDVEALVNHYEDRLDEAGFFFPPDKAPSMKVVFRNMFSRMPLTRADVQMLHGVMRQM 240

Query: 247 DKFSRQSS 254
            ++  + S
Sbjct: 241 VRWKEKDS 248


>gi|54307943|ref|YP_128963.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
 gi|46912369|emb|CAG19161.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 243

 Score =  304 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 4/245 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++L+      NIG  ARAM    LT L LV+P       K+ + +A A  V+ + 
Sbjct: 2   LDKISVVLIGTSHPGNIGSAARAMKVMGLTNLVLVDPACEI-DAKSLALAAGAADVVTNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EAIAD   +  ++AR+R      L P+E+ I   E   +   V I+FGRER G
Sbjct: 61  KIVKTLDEAIADCGLVIGSSARSRTLEWPQLDPRESGIKTIEEAAA-HPVAILFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKG 190
           LTNEE+   +  +  P NP + SLN++ AV  + +E     + + +   ++  N      
Sbjct: 120 LTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAFLETQKYTGEKIINEYPRAK 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           EL  F ++LE    +  +         ++  L  +F R    ++E+ +LRGI+++++K  
Sbjct: 180 ELELFYEHLEKVTTQTQFINKKH-PGMVMTKLRRMFTRARPEQQELNILRGILTSVEKSL 238

Query: 251 RQSSR 255
               +
Sbjct: 239 EHRDK 243


>gi|157961311|ref|YP_001501345.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157846311|gb|ABV86810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella pealeana
           ATCC 700345]
          Length = 254

 Score =  304 bits (779), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 12/255 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  P+   P   + + +A A  ++   
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVE-PDGHSIALAAGASDILKHA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              S+++EAIAD   + AT+AR+R     +L P+EA   L     +G  V I+FGRE  G
Sbjct: 61  ITVSSVEEAIADCSLVIATSARSRTLDWPMLEPREAGEKLVGSALNG-PVAIVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---------KNVKE 182
           LTNEE+   +  ++ P NP + SLN++QAV ++ +E     +   +         ++ + 
Sbjct: 120 LTNEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQVQNSAEAVIETESEEA 179

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           Q    +  E  +F ++LE +L    +        +++  L  +F R  + R+E+ +LRGI
Sbjct: 180 QEDFPSSKERENFFEHLENTLFSTNFIVKNH-PGQIMTKLRRLFSRTRIERQEMNILRGI 238

Query: 243 VSTLDKFSRQSSRRN 257
           ++++DK   +S  ++
Sbjct: 239 LTSIDKVVAKSETKD 253


>gi|126729831|ref|ZP_01745644.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
           E-37]
 gi|126709950|gb|EBA09003.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
           E-37]
          Length = 249

 Score =  304 bits (779), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 95/248 (38%), Positives = 151/248 (60%), Gaps = 1/248 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +    + P I+LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+ KA + ++ A  +
Sbjct: 1   MTRGTEQPAIVLVRPQMGENIGAAARAMWNFGLDRMRVVGPRDGWPNPKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  +    L +A++D HF+ ATTAR+R+  K+V  P+EA      RI +GQ V ++FG 
Sbjct: 61  LDEAQHTDTLADALSDCHFVLATTARSRDLTKTVYEPREAMAEAARRIAAGQRVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186
           ER GL NE++A +NAI++ PVNP F SLN++Q VLLM +E     + ++ +         
Sbjct: 121 ERAGLENEDVAQANAIVTVPVNPEFYSLNLAQCVLLMSYEWQRATADIAPKAEALAGTEF 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A   E+     + E  L+E G+F P  K + M  +L +++ R  L R +V +L G++  +
Sbjct: 181 AEAHEVEHLARHYEQQLDEAGFFFPETKAEGMKVNLRNMWSRMPLTRADVQMLHGMMRQM 240

Query: 247 DKFSRQSS 254
            +++ + +
Sbjct: 241 VRWANKKA 248


>gi|163746261|ref|ZP_02153619.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
           HEL-45]
 gi|161380146|gb|EDQ04557.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
           HEL-45]
          Length = 272

 Score =  304 bits (779), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 104/253 (41%), Positives = 151/253 (59%), Gaps = 3/253 (1%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           TP +P L   A  P I+LV PQ+GENIG  ARAMWNF L  +R+V PRDGWPS+ A + +
Sbjct: 22  TPSSPVLP--APIPAIVLVRPQMGENIGAAARAMWNFGLDHMRVVAPRDGWPSQSAVAMA 79

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A  ++D  +  ++L  A+ D  F +ATTAR R+  K V +P+ A  +  E+I +GQ V
Sbjct: 80  SGAGRLLDEAQHSADLPSALGDCDFTFATTARGRDLTKPVYSPEAAMKLAAEKIAAGQRV 139

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            ++FG ER GL NE+IA +NAI+S PVNP F SLN++Q VLLM +E M      + +  +
Sbjct: 140 AVLFGPERAGLENEDIAQANAIVSVPVNPKFASLNLAQCVLLMSYEWMRAQGEVTHEVTE 199

Query: 182 EQNT-PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
              T  A   E+     + E  LEE G+F P  K   M  +L +++ R  L R +V +L 
Sbjct: 200 MAGTDWAKGAEVDHLARHYEDRLEEAGFFYPEHKTASMKLNLRNMWSRMPLTRADVQMLH 259

Query: 241 GIVSTLDKFSRQS 253
           GI+  + ++  + 
Sbjct: 260 GILRQMVRWKEKG 272


>gi|153835375|ref|ZP_01988042.1| LasT protein [Vibrio harveyi HY01]
 gi|156973366|ref|YP_001444273.1| rRNA methylase [Vibrio harveyi ATCC BAA-1116]
 gi|148868097|gb|EDL67263.1| LasT protein [Vibrio harveyi HY01]
 gi|156524960|gb|ABU70046.1| hypothetical protein VIBHAR_01053 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score =  304 bits (779), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL LV+P+     ++  + +A A  +  +  V S 
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DDQTLALAAGAGDIAQNATVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI D   +  ++AR+R     +L P+E              V ++FGRER GLTN+E
Sbjct: 66  LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKFAVE-GQKHPVALVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E       +  S+    E        EL  
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAPSEPEEYPRHKELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + +  +    E+  ++++ L  ++ R     +E+ +LRG+++ ++K
Sbjct: 185 FFEHLEKVMIDTQFINK-EQPGQVMNKLRRLYSRARPEAQELNILRGVLTAIEK 237


>gi|152997509|ref|YP_001342344.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150838433|gb|ABR72409.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
          Length = 240

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 129/242 (53%), Gaps = 8/242 (3%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
               I+LV+     NIG  ARAM N  L  L LV P++ +PS++A S ++ A  ++D+  
Sbjct: 3   NKVRIVLVNTSHPGNIGGAARAMKNMGLADLYLVAPKE-YPSDEAVSRASGATDILDNAV 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + + L+EA+AD   +  T+AR RN    ++ P++AA ++ +    G     +FGRE  GL
Sbjct: 62  IVNTLEEALADCQLVIGTSARERNIPWPLVDPRQAADLVFD---EGLVTAFVFGREDRGL 118

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV---KEQNTPATK 189
           TNEE+   N  +  P    F SLN+  AV ++ +E    +++  +  V   K     A  
Sbjct: 119 TNEELQRCNYHVHIPSVETFSSLNLGAAVQVIAYELRMKTLLMKDAPVVASKWDVPAANI 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++   L++LE  L +  +  P E   +++     +F R  L ++EV +LRG++++++K 
Sbjct: 179 EQIDYLLEHLEKVLVQTEFLDP-EMPMQVMTRFRRMFQRSRLDQQEVGMLRGMLTSMEKK 237

Query: 250 SR 251
            +
Sbjct: 238 MK 239


>gi|269962423|ref|ZP_06176773.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
 gi|269832919|gb|EEZ87028.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
          Length = 239

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  +  +  + S 
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAGDIAQNAAIVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI D   +  ++AR+R     +L P+E              V ++FGRER GLTN+E
Sbjct: 66  LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKFAVE-GQKHPVALVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E       +  S+    E        EL  
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYTPSEPEEYPRHKELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + E  +    E+  ++++ L  ++ R     +E+ +LRG+++ ++K
Sbjct: 185 FFEHLEKVMVETQFINK-EQPGQVMNKLRRLYSRARPEAQELNILRGVLTAIEK 237


>gi|92114963|ref|YP_574891.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91798053|gb|ABE60192.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 274

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 133/263 (50%), Gaps = 8/263 (3%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L        I+L+      NIG  ARAM N  L  L LV PR      ++ + ++
Sbjct: 8   PQPRALFIMLDKLRIVLIGTSHPGNIGGTARAMHNMGLADLALVAPRCEVYGSESHARAS 67

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNV 121
            AD ++ + RV + L+EA++D  F+   +AR R+    +L P+     L  E        
Sbjct: 68  GADALVSNARVHATLEEAVSDCTFVVGASARVRHLPWPMLTPRALGERLPRECAPENARA 127

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-- 179
            ++FGRE  G+TN E+   +A +  P NP F SLN++ AV ++ +EC    + S  ++  
Sbjct: 128 ALVFGREDSGMTNGELQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLAFLGSDAEDTE 187

Query: 180 ----VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
               V+  N PAT  +L  F ++LE +L +  +  P +  ++++  L  +F+R  +   E
Sbjct: 188 TPFGVEWDNPPATHDDLERFFEHLERTLIDIDFHDP-DNPRQLMARLRRLFLRTHIDSME 246

Query: 236 VFLLRGIVSTLDKFSRQSSRRNN 258
           + +LRGI+  ++K SR  + R +
Sbjct: 247 MNILRGILGAVNKQSRALAARKD 269


>gi|90423088|ref|YP_531458.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB18]
 gi|90105102|gb|ABD87139.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB18]
          Length = 410

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 109/258 (42%), Positives = 171/258 (66%), Gaps = 2/258 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +    GPV+ILV+PQLGENIGM ARAM NF LT+LR+V PRDGWP+  AR +++ AD 
Sbjct: 10  KAKADLTGPVVILVEPQLGENIGMCARAMGNFGLTRLRIVKPRDGWPNVHARRAASGADY 69

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++D+V +F  +++A+A    ++ATTAR  +  K V AP+EAA  +   +  G  VGI+FG
Sbjct: 70  ILDAVELFETVEQAVAGCSLLFATTARAHDQAKPVRAPEEAAREIFAEVGQGGEVGIMFG 129

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNT 185
           RER+GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E  + +  ++    + E++ 
Sbjct: 130 RERYGLENDEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFKLATANALPFAMPERSE 189

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A++ ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  
Sbjct: 190 RASQHQMQAFFDNLVGELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMA 249

Query: 246 LDKFSRQSSRRNNVLLQK 263
           + +  R+   +  VL  +
Sbjct: 250 IAE-GRKGPAKGGVLDGE 266


>gi|77465011|ref|YP_354514.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
 gi|126464273|ref|YP_001045386.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|332560613|ref|ZP_08414931.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|77389429|gb|ABA80613.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
 gi|126106084|gb|ABN78614.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332274411|gb|EGJ19727.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 243

 Score =  303 bits (777), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 141/239 (58%), Gaps = 1/239 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV PQ+GENIG  ARAM NF L +LR+V+PRDGWP+ KA + ++ A  ++D   +F
Sbjct: 5   PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EAI D  +++ATTAR R   K V+ P+ A          G+ VGI+FG ER GL N
Sbjct: 65  PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           E++AL+NAI++ PVNP F SLN++Q VLL+ +E       +  + +       A+  E+ 
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
              D+ E  LE  G+F P EK   M  +L +++ R  L R +V  L G++  +    +Q
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLKQ 243


>gi|149914927|ref|ZP_01903456.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
 gi|149811115|gb|EDM70952.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
          Length = 248

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/244 (40%), Positives = 149/244 (61%), Gaps = 1/244 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +      P  +LV PQ+GENIG  ARAMWNF L ++RLV PRDGWP+ KA + ++ A  +
Sbjct: 1   MPTDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++ +++ EA+AD HF+ ATTAR R   K V +P+ A  V  ERI +G+ V ++FG 
Sbjct: 61  LDEAQLTADVAEAVADCHFVMATTARARGLTKPVFSPEHAMQVAAERIAAGERVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL NE+IA +NAII+ PVNP FPSLN++Q VLL  +E        + + V   +   
Sbjct: 121 ERAGLENEDIAKANAIINVPVNPDFPSLNLAQCVLLTGYEWRRAQGAITPERVDMARADW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + E+    D+ E  L E G+F P  K + M  +L +++ R  L R +V +L G++  +
Sbjct: 181 AEQIEIEKLADHYEARLSEAGFFFPEHKAEGMRLNLRNMWSRMPLTRADVQILHGVLRQM 240

Query: 247 DKFS 250
            ++ 
Sbjct: 241 VRWK 244


>gi|254509335|ref|ZP_05121424.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
           parahaemolyticus 16]
 gi|219547731|gb|EED24767.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
           parahaemolyticus 16]
          Length = 241

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+ L LV+P+     E+A + +A A  + ++ ++ S+
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQALALAAGASDIAENAKIVSS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA++D   +  ++AR+R     +L P+E  +   E   S   V ++FGRER GLTN+E
Sbjct: 66  LTEAVSDCALVVGSSARSRTLEWPMLEPRECGVKFVEEGQS-APVALVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +   +      E        EL  
Sbjct: 125 LQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAFLEKEQSQYATTELVEYPRHKELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE   ++  +    ++  K+++ L  +F R     +E+ +LRG+++ ++K
Sbjct: 185 FFEHLEKVAQKTQFI-SEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAIEK 237


>gi|197335335|ref|YP_002155372.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
 gi|197316825|gb|ACH66272.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
          Length = 241

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 4/241 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    LT + LV P       +A + +A A  + ++ 
Sbjct: 2   LDKIRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEV-DGQAIALAAGASDIANNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV   L EAI+D   +  ++AR+R     +L P+EA I   E   +   +  +FGRER G
Sbjct: 61  RVVDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPT-HPIAFVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKG 190
           LTNEE+   +  +  P NP + SLN++ AV  + +E     + S   K   ++       
Sbjct: 120 LTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEADYPLNH 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           EL  F ++LE  +    +        ++++ +  +F R     +E+ +LRG+++ +++  
Sbjct: 180 ELELFYEHLEKVMTNTDFINKAH-PGQVMNKMRRMFNRTRPETQELRILRGVLTAVERSM 238

Query: 251 R 251
           +
Sbjct: 239 K 239


>gi|238921055|ref|YP_002934570.1| hypothetical protein NT01EI_3185 [Edwardsiella ictaluri 93-146]
 gi|238870624|gb|ACR70335.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 245

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     N+G  ARAM    LT L LVNP    P  +A + SA A  VI + 
Sbjct: 2   LDNIRIVLVETSHTGNMGSTARAMKTMGLTNLYLVNPL-VRPDSQAIALSAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  +AI     +  T+AR+R+    +L P+E     +        V I+FGRER G
Sbjct: 61  TIVGSFDDAIVGCSLVVGTSARSRSLPWPMLEPRECGQR-SAMESEHAPVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATK 189
           LTN+E+   +  +  P NP + SLN++ AV ++ +E     +          E+      
Sbjct: 120 LTNDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAKAPAVEEAAYPLA 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +L  F  +LE +L   G+ R  +   ++++ L  +F R     +E+ +LRGI++++DK
Sbjct: 180 DDLERFYAHLEQTLHHTGFIR-EKSPGQVMNRLRRLFTRARPEAQELNILRGILASIDK 237


>gi|59711222|ref|YP_203998.1| methyltransferase [Vibrio fischeri ES114]
 gi|59479323|gb|AAW85110.1| predicted methyltransferase [Vibrio fischeri ES114]
          Length = 241

 Score =  303 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 4/241 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    LT + LV P       +A + +A A  + ++ 
Sbjct: 2   LDKIRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEV-DGQAIALAAGASDIANNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV   L EAI+D   +  ++AR+R     +L P+EA I   E   +   +  +FGRER G
Sbjct: 61  RVVDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPT-HPIAFVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKG 190
           LTNEE+   +  +  P NP + SLN++ AV  + +E     + S   K   ++       
Sbjct: 120 LTNEELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEVDYPLNH 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           EL  F ++LE  +    +        ++++ +  +F R     +E+ +LRG+++ +++  
Sbjct: 180 ELELFYEHLEKVMTNTDFINKAH-PGQVMNKMRRMFNRTRPETQELRILRGVLTAVERSM 238

Query: 251 R 251
           +
Sbjct: 239 K 239


>gi|330446686|ref|ZP_08310338.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490877|dbj|GAA04835.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 246

 Score =  302 bits (775), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 4/247 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    LT L LV+P     S    + +A A  V+++ 
Sbjct: 2   LDKIRVVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDS-HTIALAAGAADVVENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA++D   +  ++AR+R      L P+E  I +        NV I+FGRER G
Sbjct: 61  KIVETLDEAVSDCGLVVGSSARSRTLEWPQLDPRENGIKVVAE-SEHHNVAILFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190
           LTNEE+   +  +  P NP + SLN++ AV  + +E     + S +   K Q        
Sbjct: 120 LTNEELQKCHCHVYIPANPEYSSLNLAMAVQTVSYEVRMAYLESQKHTGKTQVEEYPRAE 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           EL  F  +LE    +  +         ++  L  +F R    ++E+ +LRGI+S+++K  
Sbjct: 180 ELERFYVHLEHVTRQTRFINKNH-PGMVMAKLRRLFTRARPEQQELNILRGILSSVEKTI 238

Query: 251 RQSSRRN 257
               + N
Sbjct: 239 ETLEKNN 245


>gi|163759594|ref|ZP_02166679.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
 gi|162283191|gb|EDQ33477.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
          Length = 276

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/245 (48%), Positives = 168/245 (68%), Gaps = 2/245 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP IIL++PQLGENIGMVARAM NF L+ LR+VNPRDGWP+EKA S+++ AD VI+S +V
Sbjct: 14  GPAIILMEPQLGENIGMVARAMANFGLSNLRIVNPRDGWPNEKAISAASRADHVIESAKV 73

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L+ A ADL+F++ATTAR R+  K V  P EA  VL  R  +G+  GI+FGRER GL 
Sbjct: 74  FETLEAATADLNFVFATTARPRDGHKPVRGPVEAGTVLRTRENAGEKTGILFGRERIGLR 133

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGE 191
           N E+ L++ I++FPVNP + SLNI+QAVLL+ +E +++ +    +      +  PA K +
Sbjct: 134 NWEVGLADEIVTFPVNPAYASLNIAQAVLLISYEWLKSGLADPHETAFSAPEVEPAPKTD 193

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L      +E  L+ RGYFR  +K+ K +D+L ++  RP    +E+ +LRG+ ++ D+F R
Sbjct: 194 LHGLFGQIEEGLDARGYFRSDDKRMKAIDNLRAVLTRPGFSTDEINVLRGVFASFDRFDR 253

Query: 252 QSSRR 256
             +RR
Sbjct: 254 SGNRR 258


>gi|149908845|ref|ZP_01897505.1| RRNA methylase, SpoU family [Moritella sp. PE36]
 gi|149808119|gb|EDM68060.1| RRNA methylase, SpoU family [Moritella sp. PE36]
          Length = 238

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 4/236 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM     TQL LV P      EK+ + +A A  V+++  +   
Sbjct: 7   VVLVGTSHPGNIGSAARAMKTMGFTQLVLVAPLCEI-DEKSVALAAGAADVLENATIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+AD   +  T+AR+R     +L  +EA + L E +     V ++FGRER GLTNEE
Sbjct: 66  LEEAVADCGLVIGTSARSRTLQWPMLDSREAGLKLIEEV-PNYPVALVFGRERIGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +      +    NP + SLN++ AV ++ +E     + ++    +E   P  + EL  F 
Sbjct: 125 LQKCTYHVCVAANPEYSSLNLAMAVQILTYETRMAYLATNTYPEQENPYP-KQEELEMFH 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +LE +L + G+         +++ L  +F R      E+ +LRG + ++ +  ++
Sbjct: 184 THLEQTLWDSGFINKAH-PGVVMNRLRRLFTRARPETIELNILRGALVSIQRNFKK 238


>gi|121601814|ref|YP_989116.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120613991|gb|ABM44592.1| RNA methyltransferase, TrmH family, group 1 [Bartonella
           bacilliformis KC583]
          Length = 275

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 127/269 (47%), Positives = 177/269 (65%), Gaps = 2/269 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M       +N   GPVI+LV+PQL ENIGMVARAM NF L+ LRL+NPR+ +P++KA+++
Sbjct: 1   MAGTNRNCKNVMDGPVIVLVEPQLPENIGMVARAMANFGLSDLRLINPRETFPNDKAKAA 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VID+  VF+ L +AIADLH+I+ TTAR R  FK + +  EAA +L +    G  
Sbjct: 61  ASKADHVIDNALVFNTLHDAIADLHYIFGTTARKRYGFKIIKSAVEAASILRQHENLGHK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGL N+EI+L N I++FPVNP F SLNI+QAVLLM +E M++ + +     
Sbjct: 121 TGILFGRERWGLKNDEISLVNEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGLENVSDTA 180

Query: 181 --KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
              E+   A +  L   L  LE +L+ RGYFRP E+K+ M+ ++ S+F R      EV L
Sbjct: 181 FRAEEMKLADRETLHGLLFQLEDALDVRGYFRPQERKEIMVSNMRSVFTRANFSESEVRL 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
           LRGIVS+L+ FS +  R +    ++  K 
Sbjct: 241 LRGIVSSLNHFSPKFPRGSGAPAERDRKK 269


>gi|163802460|ref|ZP_02196353.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159173761|gb|EDP58576.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 239

 Score =  302 bits (774), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 5/236 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+QL LV P+     ++  + +A A  +  +  V S 
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVEPQCEV-DDQTLALAAGAGDIAQNATVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   +  ++AR+R     +L P+E              V ++FGRER GLTN+E
Sbjct: 66  LEEAIADCGLVVGSSARSRTLEWPMLEPRECGEKFAVE-GQKHPVALVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E       +  S+             EL  
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQSQYAPNAVEEYPRHKELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           F ++LE  L +  +    E+  ++++ L  ++ R     +E+ +LRG++S ++K  
Sbjct: 185 FFEHLEKVLVDTQFINK-EQPGQVMNKLRRLYSRARPETQELNILRGVLSAIEKKR 239


>gi|221235541|ref|YP_002517978.1| SpoU family methyltransferase [Caulobacter crescentus NA1000]
 gi|220964714|gb|ACL96070.1| rRNA methylase, SpoU family [Caulobacter crescentus NA1000]
          Length = 263

 Score =  301 bits (773), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 105/256 (41%), Positives = 148/256 (57%), Gaps = 7/256 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P +IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A   +D  +V
Sbjct: 10  PPCVILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKV 69

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L+ AIADL  +YATTAR R     +  P+E+A  L E +  G+ VG++FG ER GL 
Sbjct: 70  FDTLEAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLE 129

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGEL 192
            ++IAL  AI+S P++  F SLN++QAV +  +E           K  +    PA +  L
Sbjct: 130 TDDIALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEEPADQAAL 189

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           L    +LE  LE+ G++ P EKK  M+ +L +   R  L  +EV   RG+++ L K    
Sbjct: 190 LGLYGHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSKG--- 246

Query: 253 SSRRNNVLLQKTEKSE 268
              R  VL +  EK++
Sbjct: 247 ---RGRVLAKLAEKAK 259


>gi|114766189|ref|ZP_01445189.1| RNA methyltransferase, TrmH family, group 1 [Pelagibaca bermudensis
           HTCC2601]
 gi|114541560|gb|EAU44603.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           HTCC2601]
          Length = 247

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 142/247 (57%), Gaps = 1/247 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +  K P  +LV PQ+GENIG  ARAMWNF L ++RLV+PRDGWP+  + + ++ A  +
Sbjct: 1   MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPSSVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   +  ++  A+ D   ++ATTAR R   K V +P+EA     ERI  G  V ++FG 
Sbjct: 61  LDDAVLSEDVAGAVGDCDLVFATTARQRGMTKPVYSPEEAMRAAAERIAQGGRVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNTP 186
           ER GL N ++A +NAIIS PVNP FPSLN++Q VLL  +E    S    + ++       
Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAEIEARRDEMAGAAW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  E+    ++ E  LEE G+F P  K   M   L +++ R  L  E+V  L GI+  +
Sbjct: 181 ASGIEVEKLAEHYEQRLEEAGFFFPDHKAPAMKLTLRNLWSRMPLTSEDVRTLHGILRQM 240

Query: 247 DKFSRQS 253
            ++  + 
Sbjct: 241 VRWKERG 247


>gi|146279814|ref|YP_001169972.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558055|gb|ABP72667.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 243

 Score =  301 bits (771), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 142/239 (59%), Gaps = 1/239 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV PQ+GENIG  ARAM NF L +LR+V+PRDGWP+ KA + ++ A  ++D   +F
Sbjct: 5   PVFILVRPQMGENIGAAARAMLNFGLARLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ EAI D  +++ATTAR R   K V+ P+ A          G+ VGI+FG ER GL N
Sbjct: 65  PSVAEAIRDCDYVFATTARGRELTKPVMTPERAMTHARALTGEGRRVGILFGPERTGLEN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           E++AL++AI++ PVNP F SLN++Q VLL+ +E       +  + +       A+  E+ 
Sbjct: 125 EDVALASAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
              D+ E  LE  G+F P EK   M  +L +++ R  L R +V  L G++  +    +Q
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLALTRADVQTLHGMLRQIAWKLKQ 243


>gi|221368992|ref|YP_002520088.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides KD131]
 gi|221162044|gb|ACM03015.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides KD131]
          Length = 243

 Score =  301 bits (771), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 140/239 (58%), Gaps = 1/239 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV PQ+GENIG  ARAM NF L +LR+V+PRDGWP+ KA + ++ A  ++D   +F
Sbjct: 5   PVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EAI D  +++ATTAR R   K V+ P+ A          G+ VGI+FG ER GL N
Sbjct: 65  PTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLEN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           E++AL+NAI++ PVNP F SLN++Q  LL+ +E       +  + +       A+  E+ 
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCALLLAYEWRRQHDETPPEVIDMARVDFASGLEVE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
              D+ E  LE  G+F P EK   M  +L +++ R  L R +V  L G++  +    +Q
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGMKLNLRNMWARLPLTRADVQTLHGMLRQIAWKLKQ 243


>gi|90420931|ref|ZP_01228836.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334906|gb|EAS48678.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 311

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 111/241 (46%), Positives = 166/241 (68%), Gaps = 2/241 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +    GP I+LV+PQLGENIGMVARAM NF L+ LRLV+PRDGWP+E+A ++++ AD VI
Sbjct: 33  KTPEAGPAIVLVEPQLGENIGMVARAMANFGLSDLRLVSPRDGWPNERAVAAASRADHVI 92

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++ R++ +++ A+ADL F+YATTAR R++FK V  P+ AA  L  RI +GQ+ GI+FGRE
Sbjct: 93  EAARLYDSVEAAVADLTFVYATTARARDSFKPVREPETAAANLRARIGAGQSAGILFGRE 152

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTP 186
           R+GL+NEE+ L++ I++FPV+P F SLNI+QAVLL+ +       + V+  +    +  P
Sbjct: 153 RFGLSNEEVGLADEIVTFPVDPDFASLNIAQAVLLVSYAWRMAGSADVTKPRFSAPEVPP 212

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A K +L   L++LE SL+  GYF P  K++ +   L ++  +      EV  +RG++ + 
Sbjct: 213 ARKEDLHRLLEHLETSLDRNGYFYPEHKREALAQKLRTMLTKAGFSEPEVRTMRGVIRSF 272

Query: 247 D 247
           D
Sbjct: 273 D 273


>gi|89095322|ref|ZP_01168240.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
 gi|89080397|gb|EAR59651.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
          Length = 248

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 129/247 (52%), Gaps = 10/247 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A    I+LV+     NIG VARAM N +  +L LV P+  +P   A + ++ A  ++++ 
Sbjct: 2   ASNVRIVLVNTTHPGNIGGVARAMKNMDFAELHLVEPK-KFPHVNADARASGATDLLENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V   L+EAIAD   +  T+AR R+    V+ P+E A ++   +   + + I+FGRE  G
Sbjct: 61  LVHETLEEAIADCQLVVGTSARGRHIPWPVVDPRELAAIVGP-VMDEKKIAIVFGREDRG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------- 184
           LTNEE+ L +  +  P NP F SLN++ AV ++ +E    S+ ++E              
Sbjct: 120 LTNEELHLCHYHVHIPSNPEFSSLNLAAAVQVITYELRMASLYAAENAEHRPQWGTDWDI 179

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             A  G+L     +LE +L +  +  P E  ++++  L  +++R    + EV +LRGI++
Sbjct: 180 DLADSGDLERLFAHLEETLVDIEFLDP-ENPRQLMPRLRRLYLRAIPDKVEVNVLRGILT 238

Query: 245 TLDKFSR 251
              K  +
Sbjct: 239 ATQKQLK 245


>gi|304391439|ref|ZP_07373381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
           R2A130]
 gi|303295668|gb|EFL90026.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
           R2A130]
          Length = 261

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/248 (48%), Positives = 172/248 (69%), Gaps = 1/248 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A+GPV+ILV+PQ+GENIG  ARAM NF L +LRLV+PRDGWP+  A++++A AD +ID+V
Sbjct: 12  AEGPVVILVNPQMGENIGGAARAMANFGLAELRLVDPRDGWPNPIAKANAAKADHIIDNV 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VF  L++A+ADL F+YATTAR R   K V  P EAA  L  R  +G+  GI+FGRER G
Sbjct: 72  QVFDLLEDALADLQFVYATTARQREMLKPVRGPAEAASTLRTRHRAGERTGILFGRERAG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L + E+AL++ I++FPVNP F SLNI+QAVLLM +E M +  +    + +  + PA K +
Sbjct: 132 LESVEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMASGEIELPIH-QPPSEPAEKDD 190

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L     +LE +LE+  YFRP  KK  M+++L +IF +  L ++E+  LRG+V+TL+    
Sbjct: 191 LFGLFGHLEGALEDMHYFRPSHKKATMVENLRNIFQKAGLSKQEIHALRGVVATLEGRKT 250

Query: 252 QSSRRNNV 259
           +  R++  
Sbjct: 251 RPRRQHGD 258


>gi|298292134|ref|YP_003694073.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
           506]
 gi|296928645|gb|ADH89454.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
           506]
          Length = 282

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/256 (41%), Positives = 160/256 (62%), Gaps = 1/256 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV++LV+PQLGENIG   RAM NF L++LRLVNPR+GWP+ KA + ++ AD ++++  V
Sbjct: 16  GPVVVLVEPQLGENIGSAVRAMGNFGLSRLRLVNPREGWPNPKAVTFASGADRILENAEV 75

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+ A+ADL+F+ A TAR R   K+VL     A     RI  G+NVG++FGRER GL 
Sbjct: 76  FPDLRAALADLNFVAAATARERGMQKTVLGADAVATEAVARIAGGENVGLVFGRERTGLY 135

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGEL 192
            EE++L++ I++ PVNP F SLN+  AV ++ +E  + +   +    +    P A K +L
Sbjct: 136 TEEVSLADVILTLPVNPAFASLNLGMAVAVVAYEWFKLASGGALPFQQPDRYPIADKADL 195

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           L+F D++E  L+E  +FR  EKK   + ++ +IF R  L R+++  L G+V+ L +  R 
Sbjct: 196 LAFFDHVEKELDEALFFRSPEKKPVTIRNIRNIFHRVGLTRQDIATLHGMVAALVEGRRT 255

Query: 253 SSRRNNVLLQKTEKSE 268
              R    L    K +
Sbjct: 256 REERTAARLSGKPKEK 271


>gi|260427916|ref|ZP_05781895.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
 gi|260422408|gb|EEX15659.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
          Length = 247

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 144/247 (58%), Gaps = 1/247 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +  K P  +LV PQ+GENIG  ARAMWNF L ++RLV+PRDGWP+  + + ++ A  +
Sbjct: 1   MPSDVKQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPASVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   +  ++  A+ D   I+ATTAR R   K V +P+EA      RI +G  V ++FG 
Sbjct: 61  LDDAVLSEDVAGAVGDCDLIFATTARQRGMTKPVYSPEEAMREAASRIAAGGRVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTP 186
           ER GL N ++A +NAIIS PVNP FPSLN++Q VLL  +E    S  + + ++       
Sbjct: 121 ERAGLENADVAQANAIISVPVNPEFPSLNLAQCVLLCGYEWRRASAGIEARRDEMAGAEW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  E+    ++ E  L+E G+F P  K   M   L +++ R  L RE+V  L GI+  +
Sbjct: 181 ASAIEVEKLSEHYEERLDEAGFFFPDHKAPAMKLTLRNLWSRMPLTREDVRTLHGIMRQM 240

Query: 247 DKFSRQS 253
            ++  + 
Sbjct: 241 VRWKERG 247


>gi|167647484|ref|YP_001685147.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349914|gb|ABZ72649.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 266

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/246 (41%), Positives = 144/246 (58%), Gaps = 1/246 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + ++   P +IL +PQ+ ENIG VAR M NF L  LRLV PRDGWP E+A  S++ A   
Sbjct: 1   MSSNFPPPCVILNNPQMAENIGAVARVMANFGLEDLRLVKPRDGWPQERAWPSASGATWP 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D+ +VF  L+EAIADL  ++ATTAR R     V+ P+EAA  L++ +  G  VG++FG 
Sbjct: 61  LDNAKVFDTLEEAIADLKLVFATTARPRETRLPVVTPREAAAQLSDEVGRGHAVGLLFGG 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186
           ER GL  ++IAL  AIIS P++  F SLN++QAV +  +E           K  +    P
Sbjct: 121 ERAGLETDDIALCQAIISIPIDERFRSLNLAQAVSINAYEWKMTVDDRPWVKFEQNVEPP 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A +  LL     LE  LEE G++ P EKK  M+ +L +   R  L  +EV   RG+V+ L
Sbjct: 181 ADQSSLLGLYAQLEEQLEEAGFYHPPEKKPSMVRNLRAPLARARLTEQEVRTFRGVVTAL 240

Query: 247 DKFSRQ 252
            +   +
Sbjct: 241 SRGRGR 246


>gi|254475698|ref|ZP_05089084.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
 gi|214029941|gb|EEB70776.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
          Length = 248

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/248 (36%), Positives = 146/248 (58%), Gaps = 1/248 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP++KA + ++ A  +
Sbjct: 1   MPSDTPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++ + L +++ D  F++ATTAR R   K V +P+ A  +  E+  +GQ V ++FG 
Sbjct: 61  LDEAQLSATLADSLEDCDFVFATTARPRELTKPVYSPEAAMKLAAEKTAAGQKVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL NE++A +NAII+ PVNP F SLN+ Q VLL  +E         +      ++  
Sbjct: 121 ERAGLENEDVARANAIITVPVNPEFASLNLGQCVLLTAYEWRRQVEEVVDVTTDLGKSDW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A   ++ + +++ E  LEE G+F P EK   M     ++F R  L R +V +L G++  +
Sbjct: 181 ANHADVDALVNHYEGRLEEAGFFFPPEKAPGMKVVFRNLFSRLPLTRADVQMLHGVMRQM 240

Query: 247 DKFSRQSS 254
            ++  +  
Sbjct: 241 VRWKEKRD 248


>gi|329849321|ref|ZP_08264167.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841232|gb|EGF90802.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 267

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 147/249 (59%), Gaps = 1/249 (0%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           AP L  +   P +IL  PQL +NIG VAR M NF L +LRLV PRDGWP ++A ++S+ A
Sbjct: 7   APPLDPNLTLPCVILDRPQLADNIGSVARVMANFGLQELRLVAPRDGWPQDRAWATSSGA 66

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +  +D  +VF+ + EA+ADL  +YATTARNR     V+ P++ A+         Q  G++
Sbjct: 67  NWPLDGAKVFATVAEAVADLKTVYATTARNREVHLPVVTPRQTAVEAYAAAQGHQKTGLL 126

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ- 183
           FG ER GL   +IAL +AI++ PV+P F SLN++QAV ++++E     + + +    +  
Sbjct: 127 FGAERAGLETSDIALCHAIVTIPVDPHFHSLNLAQAVNIILYEWRLLVMDAPKAAFTQNM 186

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           + PA    L     +LE  LE  G+F P EKK+ ML +L  +  R  +  +E+   RG+V
Sbjct: 187 DEPADLKFLHGLYGHLEDELEAAGFFFPPEKKESMLRNLRVVLNRARMTEQEIRTWRGVV 246

Query: 244 STLDKFSRQ 252
           + L K   +
Sbjct: 247 TALTKGRGR 255


>gi|163731767|ref|ZP_02139214.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
           Och 149]
 gi|161395221|gb|EDQ19543.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
           Och 149]
          Length = 251

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 152/249 (61%), Gaps = 1/249 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +N+   P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP++ A + ++ A  
Sbjct: 3   ETRNNPATPAFVLVRPQMGENIGASARAMWNFGLDRMRVVAPRDGWPNQAAVALASGAGR 62

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++D+  +  +L  +I D  F++ATTAR R+  K V +P+EA     ERI +G+ V ++FG
Sbjct: 63  LLDNASLSPDLPASIEDCSFVFATTARPRDLTKPVFSPEEAMRAAAERISAGERVAVLFG 122

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNT 185
            ER GL NE+IA +NAIIS PVNP FPSLN++Q VLL+ +E M  +   + + V+     
Sbjct: 123 PERAGLENEDIARANAIISVPVNPDFPSLNLAQCVLLVGYEWMRATGDVTPQAVEMSGTE 182

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A   E+     + E  LEE G+F P  K + M  +L + + R  + R +V +L G++  
Sbjct: 183 WAENIEVEHLATHYEDRLEEMGFFFPAHKSQSMRMNLRNFWSRMPMTRADVQMLHGMMRQ 242

Query: 246 LDKFSRQSS 254
           + ++  +  
Sbjct: 243 MVRWKTRGD 251


>gi|46202068|ref|ZP_00053833.2| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/247 (37%), Positives = 154/247 (62%), Gaps = 1/247 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             GP IILV PQL ENIG  ARAM N  L+ +R+V PR+GW SEKA ++++ AD V+ + 
Sbjct: 1   MSGPAIILVRPQLSENIGTAARAMLNCGLSDMRIVAPREGWLSEKAIAAASGADRVLLAA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VF + K+A+ADL+ ++ATT R+R   K V  P+EAA  +      G   G++FG ER G
Sbjct: 61  KVFESTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAADAEGLKFGVLFGPERTG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKG 190
           L N+++A+++ +++ P+NP + SLN++QAVLL+ +E  +     +   + + +  PA+K 
Sbjct: 121 LENDDVAVADTVLTVPLNPDYCSLNLAQAVLLISYEWHQCEAAETLPAMTKGSEGPASKE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L+ F ++LE  L+  G+ R  +K+  M+ ++ ++F R  L  +E+  L GIV  L  + 
Sbjct: 181 KLIFFFEHLERELDSCGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVTYR 240

Query: 251 RQSSRRN 257
            +   + 
Sbjct: 241 HKKGEKG 247


>gi|91792812|ref|YP_562463.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
           OS217]
 gi|91714814|gb|ABE54740.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
           OS217]
          Length = 259

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 21/255 (8%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L L  P+   P  ++ + SA A  ++  +
Sbjct: 2   LSNIRVVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPKVE-PDGQSIALSAGASDILKHL 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L EAIAD   + AT+AR+R     +L P+EA I L     +G  V I+FGRE  G
Sbjct: 61  TRVDSLAEAIADCSLVIATSARSRTLDWPMLDPREAGIKLTAEALNG-PVAIVFGRENNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM------------------ENSI 173
           L+NEE+      ++ P NP + SLN++QAV ++ +E                      +I
Sbjct: 120 LSNEELQSCQFHVAIPANPEYSSLNLAQAVQIICYEARVAHLAQLAKMDDSEAAPQAAAI 179

Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
           V +E   +E        +L  F  +LE +L   G+        +++  L  +F R  +  
Sbjct: 180 VEAETAPEEPQAYPLSADLERFYTHLESTLLATGFVIKNH-PGQIMMKLRRLFSRARVEE 238

Query: 234 EEVFLLRGIVSTLDK 248
           +E+ +LRGI++++DK
Sbjct: 239 QEMNILRGILTSIDK 253


>gi|94501916|ref|ZP_01308426.1| rRNA methylase [Oceanobacter sp. RED65]
 gi|94425969|gb|EAT10967.1| rRNA methylase [Oceanobacter sp. RED65]
          Length = 253

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 13/253 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVI 68
            +   I+L+      NIG  ARAM    +  L LV P+   P+   + A + ++ A  ++
Sbjct: 2   LENLRIVLIGTSHNGNIGSTARAMKTMGINDLVLVEPKSFDPNNLCDDAIAMASGATDLL 61

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            S +V S  ++AI D   +   +AR+R+    ++ P++AA    E +  GQ V ++ GRE
Sbjct: 62  ASAKVVSTFEQAIEDCAVVMGASARSRHLPWPLMHPRKAAAKSMEVLPRGQKVALVLGRE 121

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------ 182
           R GLTN+E+A+    I  P NP + SLN++ A  ++ +E    ++   +    E      
Sbjct: 122 RTGLTNDELAMCQVHIHIPANPDYASLNVAAAAQVLCYEVRMAALDHQQALEPEYEGDWG 181

Query: 183 ---QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
               N  AT+GE+  F  +LE +L +  +  P    K+++  L  +F R    + EV +L
Sbjct: 182 VSWDNELATQGEMNGFFQHLEETLVDIQFLDP-NNPKQLMPRLRRLFQRAMPDKVEVNIL 240

Query: 240 RGIVSTLDKFSRQ 252
           RGI+  + + ++Q
Sbjct: 241 RGILKMVLRNNKQ 253


>gi|197104457|ref|YP_002129834.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
 gi|196477877|gb|ACG77405.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 261

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 109/242 (45%), Positives = 148/242 (61%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S   PVIIL  PQL ENIG VAR M NF L+ LRLVNPRDGWP E+A +S++ AD  +++
Sbjct: 5   SYPAPVIILNTPQLAENIGAVARVMANFGLSDLRLVNPRDGWPLERAWASASGADWPLNA 64

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV+ ++  AIADL  IYATTAR R     VL P+ AA  L+    +GQ VG++FG ER 
Sbjct: 65  ARVYDSVAAAIADLQLIYATTARPRELQLPVLTPRRAAGDLHAAAAAGQRVGLLFGGERA 124

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL  ++IAL  A+++ P++P F SLN++QAV +  +E    +      N +E   PAT  
Sbjct: 125 GLETQDIALCQAVVTIPIDPRFRSLNLAQAVAINAYEWRATAADRPPPNFREGPPPATGE 184

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            LL F ++LE  LE  G+F P EK   M+ +L S   R     +EV  LRG+V+ L +  
Sbjct: 185 ALLGFYEHLERELETAGFFHPPEKTPNMIQNLRSALGRARFTDQEVRTLRGVVTALSRGR 244

Query: 251 RQ 252
            +
Sbjct: 245 GK 246


>gi|37678937|ref|NP_933546.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37197679|dbj|BAC93517.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 242

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV P       +A + ++ A  +  +  V ++
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEV-DAQAIALASGAADIALNALVVNS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+AD   +  ++AR+R     +L P E A    +   +   V ++FGRER GLTN+E
Sbjct: 66  LEEAVADCALVVGSSARSRTLEWPMLEPFECAEKFVQEGQTSH-VALVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +   +     +E        EL  
Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSELEL 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           F  +LE  L +  + R  ++  ++++ +  +F R     +E+ +LRGI+++++K   +
Sbjct: 185 FYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEKSINK 241


>gi|315180990|gb|ADT87904.1| RNA methyltransferase, TrmH family [Vibrio furnissii NCTC 11218]
          Length = 243

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM      Q+ LV+P+    ++    ++  +D  + + ++   
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGFKQMVLVDPQCEVDAQAIALAAGASDIAL-NAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  AIAD   +  T+AR+R     +L P+E              V I+FGRER GLTN+E
Sbjct: 66  LDSAIADCGLVVGTSARSRTLEWPMLDPRECGEKFAVE-GEQHPVAIVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGELLS 194
           +   +  +S P NP + SLN++ AV  + +E     +   +      +  A     EL  
Sbjct: 125 LQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIRVAHLNRQQSQFPTMSEAAYPRHNELEL 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           F  +LE  L +  +    EK  ++++ L  +F R     +E+ +LRG+++ ++K +
Sbjct: 185 FYTHLEKVLVQTQFI-SEEKPGQVMNKLRRLFSRARPEEQELNILRGVLTAIEKQA 239


>gi|90417478|ref|ZP_01225401.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2207]
 gi|90330719|gb|EAS45998.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2207]
          Length = 248

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 7/247 (2%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +        I+LV+     NIG  ARAM N  L +L LV PR+ +P+ +A   +A A 
Sbjct: 1   MSISERQANIRIVLVNTTHPGNIGGAARAMKNMGLAELYLVQPRE-YPAPRAVWRAAGAR 59

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V+    +  ++ EAIAD   +  T+AR R     +L P+E    +           ++F
Sbjct: 60  DVLAGATIVESVDEAIADCALVVGTSARERRIPWPLLNPRECGEKIYSEAAE-HKTALLF 118

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--- 182
           GRE  GLTN+E+   +  +  P NP + SLN++ AV ++ +E    S+   + N+     
Sbjct: 119 GREDRGLTNDELQKCHYHVHIPSNPDYSSLNLATAVQVLAYEVRMASLADDQGNLPSLSE 178

Query: 183 -QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
               P T G+L  F ++L  ++ E  ++ P E  K++L  +  +F R  + + EV +LRG
Sbjct: 179 WDQPPVTAGDLEFFHEHLATTMAELQFYDP-ENPKQLLTRMRRLFNRVRMDQMEVSILRG 237

Query: 242 IVSTLDK 248
           ++S + +
Sbjct: 238 LLSAVQR 244


>gi|126736426|ref|ZP_01752167.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
 gi|126713964|gb|EBA10834.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
          Length = 246

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 92/246 (37%), Positives = 144/246 (58%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  +   P  +L+ PQ+GENIG  AR MWNF L ++R++ PRDGWP++KA + ++ A  +
Sbjct: 1   MPRAEHQPAFVLIRPQMGENIGAAARGMWNFGLDRMRIIAPRDGWPNQKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++F +   AIAD  ++YATTAR R   K VL P+ A      R   GQ V ++FG 
Sbjct: 61  LDEAQIFDDTAGAIADCDYVYATTARPRGLTKLVLTPEAAMQDARARAAQGQKVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           ER G+ N++IA +NAIIS PVNP FPSLN++Q VLL  +E    ++      V      A
Sbjct: 121 ERSGMENDDIARANAIISVPVNPDFPSLNLAQCVLLTGYEWQREAVEVDASRVDAAGDWA 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            + E+    ++ E  LE  G+F P  K + M  +L +++ R  + R +V +L G++  + 
Sbjct: 181 EQIEIEKLSEHYEERLEAAGFFYPEHKAENMKLNLRNMWSRMPMTRADVQMLHGMMRQMV 240

Query: 248 KFSRQS 253
           ++  + 
Sbjct: 241 RWKERG 246


>gi|269103289|ref|ZP_06155986.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163187|gb|EEZ41683.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 243

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 4/245 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L+      NIG  ARAM    LT L LV+P      E+A + +A A  ++++ 
Sbjct: 2   LENIRIVLIGTSHSGNIGSAARAMKVMGLTNLVLVDPACEI-DEQAMALAAGASDIVENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L E I D   +  ++AR+R      L P+E+ I       S   V I+FGRER G
Sbjct: 61  TIVKTLDETIGDCGLVIGSSARSRTLEWPQLDPRESGIKTVNESAS-HPVAILFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPATKG 190
           LTN+E+   +  +  P NP + SLN++ AV  + +E     + +   +   +        
Sbjct: 120 LTNDELQKCHCHVYIPANPEYSSLNLAMAVQTISYEIRMAHLDAIKYQGDAKVEEYPRAK 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           EL  F  +LE  L +  +   V++   ++  L  +F R     +E+ +LRG++S+++K  
Sbjct: 180 ELELFYQHLEKILVKTQFIN-VKQPAMVMAKLRRLFTRARPELQELNILRGVLSSVEKSL 238

Query: 251 RQSSR 255
            +S +
Sbjct: 239 PKSEK 243


>gi|94500611|ref|ZP_01307141.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
           RED65]
 gi|94427166|gb|EAT12146.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
           RED65]
          Length = 262

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 132/249 (53%), Gaps = 6/249 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +S     I++V      NIG  ARAM N  L+ L LV+P D +PSE+A S +A A  +++
Sbjct: 18  SSLSNIRIVMVRTWHPGNIGAAARAMKNMGLSDLVLVDPVD-YPSEQATSMAAGATDLLE 76

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           S RV +++  AI D   ++AT+AR+R++   +   +EAA  +N+ I  G  V I+FG ER
Sbjct: 77  SARVVNSIDVAIEDCQLVFATSARSRSHPWPIKEVREAAAHINDEIPQG-KVAIMFGPER 135

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL NEE+ L+   +  P NP +P LN++QAV ++ +E          +   E       
Sbjct: 136 MGLNNEELRLAQFHMDIPGNPDYPVLNVAQAVQVVCYELFMAQ---RSQPSIESKEYPQV 192

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F  +LE +L   G+        + +     +F R    + E+ +LRG++S++DK 
Sbjct: 193 AELNKFYSHLENTLTRAGFIIKAH-PGQAMLRFKRLFNRARPEKIELNMLRGVLSSIDKL 251

Query: 250 SRQSSRRNN 258
             + S  +N
Sbjct: 252 LERQSNESN 260


>gi|256822726|ref|YP_003146689.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796265|gb|ACV26921.1| RNA methyltransferase, TrmH family, group 1 [Kangiella koreensis
           DSM 16069]
          Length = 277

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 137/276 (49%), Gaps = 25/276 (9%)

Query: 2   TPYAPQLQNSA-KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           TP  PQ          I+L       NIG  ARAM    L  L LV P+D +PSE+A   
Sbjct: 5   TPQEPQFDPQLLDSIKIVLCQTSHPGNIGAAARAMKTMGLKHLVLVKPKD-YPSEEAMVR 63

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S+ A  V+++ +V   ++EA+AD   I  T++RNR     ++ P+E   ++ E +   + 
Sbjct: 64  SSGALDVLENAQVVDTVEEALADCRLIIGTSSRNRALPWPLIEPREMGELIKEHV-EARP 122

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-------- 172
           V I+FGRE  GL NEE+ L +  ++ P NP + SLN++ AV L+ +E    S        
Sbjct: 123 VAIMFGRESTGLLNEELQLCHYHVNIPANPEYMSLNLASAVQLIAYEIRLASKMIAEIVR 182

Query: 173 -------------IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219
                          +  ++ KE    A+  E+    ++LE ++ +  ++ P E+ K + 
Sbjct: 183 KDSQPVDAELGYDAQAESEHDKESEQLASFEEVDGLYNHLESTMNKTEFYNP-EQPKLLP 241

Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
             +  I  +  L + EV +LRG +S++DK+ ++  +
Sbjct: 242 ARIRRILAKARLNKGEVNILRGFLSSIDKYIKRHVK 277


>gi|209694304|ref|YP_002262232.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|208008255|emb|CAQ78400.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 242

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV      NIG  ARAM    LT + LV P       +A + +A A  + +  R+ 
Sbjct: 5   IRIVLVGTSHSGNIGSAARAMKVMGLTNMVLVAPECEV-DGQAIALAAGASDIANRARIV 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S L EAI+D   +  ++AR+R     +L P+EA +   E   S   +  +FGRER GLTN
Sbjct: 64  STLDEAISDCGLVIGSSARSRTLEWPMLEPREAGVKAIEEAPS-HPIAFVFGRERVGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKGELL 193
           EE+   +  +  P NP + SLN++ AV  + +E     + S   K   ++       EL 
Sbjct: 123 EELQKCHFHVCIPANPEYSSLNLAMAVQTISYEARVAWLDSQAYKGESKEAEYPLNNELE 182

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            F ++LE  + +  +        ++++ +  +F R      E+  LRGI++ +++ S 
Sbjct: 183 LFYEHLEKVMMDTDFINKAH-PGQVMNKMRRMFNRARPEIHELRTLRGILTAVERSSN 239


>gi|237745860|ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229377211|gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 259

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 10/245 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             ILV      N+G  ARA+      +L LV PR  +    E+A + ++ A  V++   +
Sbjct: 15  RFILVGTSHPGNVGAAARAIKTMGFDRLILVRPRFENVLTHEEAIAFASGAQDVLEKAEI 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + +A+ +  F  A TAR R     VL P++ A  +       +   ++FG ER+GL 
Sbjct: 75  VDTIDQALENCQFAAAITARLREFSPPVLTPRQFAETVL--SDKKKPCALVFGSERYGLP 132

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-----TPAT 188
           NE +    A+I+ P NP + SLN++QA+ ++ +EC    ++ + +  +  +      PA+
Sbjct: 133 NEVVEQCQALINIPANPAYSSLNLAQAIQVLAYECRMALLLENGEPARVDHIGFHGDPAS 192

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++     +LE  L   G+  P +  KK++  L  +F R  L  EEV +LRGI   ++K
Sbjct: 193 VEQINGMFAHLESVLTAIGFLNP-DNPKKLMPRLRRLFSRTGLETEEVNILRGIARQMEK 251

Query: 249 FSRQS 253
            +R S
Sbjct: 252 QARYS 256


>gi|192292727|ref|YP_001993332.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris TIE-1]
 gi|192286476|gb|ACF02857.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris TIE-1]
          Length = 399

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 108/255 (42%), Positives = 164/255 (64%), Gaps = 2/255 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +   +  GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A+ S+A AD 
Sbjct: 10  KPPAALDGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNVAAQRSAAGADH 69

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++++V +F ++ EA+ D   ++ATTAR  +  K V  P+ AA  +     SG   GI+FG
Sbjct: 70  ILNAVELFDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVAETASGGTTGIMFG 129

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNT 185
           RER GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E  +++  ++    + E++ 
Sbjct: 130 RERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSP 189

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A++ ++ +F   L   L+   + RP EK+  ML +L +IF R E  ++++  L G+V  
Sbjct: 190 RASQHQIDAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMA 249

Query: 246 LDKFSRQSSRRNNVL 260
           +    R+   +  VL
Sbjct: 250 IAD-GRKGPAKGGVL 263


>gi|27363908|ref|NP_759436.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
 gi|320157287|ref|YP_004189666.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|27360025|gb|AAO08963.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
 gi|319932599|gb|ADV87463.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 242

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV P       +A + ++ A  +  +  V ++
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEV-DAQAIALASGAADIALNALVVNS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+AD   +  ++AR+R     +L P E A    +   +   V ++FGRER GLTN+E
Sbjct: 66  LEEAVADCALVVGSSARSRTLEWPMLEPFECAEKFVQEGQTSH-VALVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +   +     +E        EL  
Sbjct: 125 LQRCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLRHQQSLYPTQETAEYPRHSELEL 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           F  +LE  L +  + R  ++  ++++ +  +F R     +E+ +LRGI+++++K   +
Sbjct: 185 FYQHLEKVLLKTEFVR-ADQPNQVMNKMRRLFSRARPEAQELNILRGILTSVEKSINE 241


>gi|84501049|ref|ZP_00999284.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
           HTCC2597]
 gi|84391116|gb|EAQ03534.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
           HTCC2597]
          Length = 244

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 88/244 (36%), Positives = 142/244 (58%), Gaps = 1/244 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              PV +LV PQ+GENIG  ARAMWNF L ++R+ +PRDGWP++KA + ++ A  ++D  
Sbjct: 1   MSQPVFVLVRPQMGENIGAAARAMWNFGLDRMRITSPRDGWPNQKAVAMASGAGRLLDEA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +F +   A+ D   ++ATTAR R   K V+ P+ A  +    I  G+ V ++FG ER G
Sbjct: 61  GIFDSTAGALQDRTHVFATTARPRGLTKPVVTPERAMEMAAGMIGRGEKVAVLFGPERAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKG 190
           L N+++  +N II+ PVNP FPSLN++Q VLL  +E   +++ ++ +      T  AT  
Sbjct: 121 LENDDVVRANTIINVPVNPDFPSLNLAQCVLLCAYEWRRHTVETAPERTDMAGTQWATGI 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+     + E  L+E G+F P  K   M  +L +++ R  L + +V  L G++  + ++ 
Sbjct: 181 EVEKLSGHYEERLDEAGFFFPAHKADTMKLNLRNLWSRMPLTQADVQTLHGVLRQMVRWK 240

Query: 251 RQSS 254
            +  
Sbjct: 241 NRRD 244


>gi|89054924|ref|YP_510375.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
 gi|88864473|gb|ABD55350.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
          Length = 258

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/256 (36%), Positives = 147/256 (57%), Gaps = 1/256 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M+   P        P  +LV PQ+GENIG  ARAMWNF L ++R+V+PRDGWP+E+A + 
Sbjct: 1   MSDATPPSVTPGGQPAFVLVRPQMGENIGAAARAMWNFGLDRMRVVDPRDGWPNERAVAL 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  ++D+  ++ +L  A++D  +++ATTAR+R   K ++ P+ A       +  G  
Sbjct: 61  ASGAGRLLDNAGLYQDLPGALSDCTYVFATTARDRGLTKPIVTPERAMEQTRAILAEGGK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKN 179
           VG++FG ER GL N +IA ++AIIS  VNP FPSLN++Q VLL  +E     S V+ E  
Sbjct: 121 VGVLFGPERAGLENADIAPADAIISVDVNPAFPSLNLAQCVLLCAYEWQRQGSTVAPEVM 180

Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
              +   A+  E+     + E  LEE G+F P  K   M   L +++ R  L R +V  L
Sbjct: 181 ALAKTDFASNLEVEKLGAHYEERLEEAGFFWPPAKADSMKLTLRNLWGRLNLTRADVQTL 240

Query: 240 RGIVSTLDKFSRQSSR 255
            G++  + +++    +
Sbjct: 241 HGVMRQMVRWAEGRRK 256


>gi|260771409|ref|ZP_05880334.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
 gi|260613535|gb|EEX38729.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
          Length = 243

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 5/236 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L Q+ LV+P+    ++    ++  +D  + + ++   
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLKQMVLVDPQCEVDAQAIALAAGASDIAL-NAQIVDT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  AIAD   +  T+AR+R     +L P+E              V I+FGRER GLTN+E
Sbjct: 66  LDSAIADCGLVVGTSARSRTLEWPMLDPRECGEKFAAE-GEQHPVAIVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA--TKGELLS 194
           +   +  +S P NP + SLN++ AV  + +E     +   +         A     EL  
Sbjct: 125 LQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIRVAHLNRQQSQFSTMPEAAYPRHNELEL 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           F  +LE  L +  +    EK  ++++ L  +F R     +E+ +LRG+++ ++K +
Sbjct: 185 FYTHLEKVLVQTQFI-SEEKPGQVMNKLRRLFSRARPEEQELNILRGVLTAVEKQA 239


>gi|119505400|ref|ZP_01627474.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2080]
 gi|119458855|gb|EAW39956.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2080]
          Length = 247

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 123/248 (49%), Gaps = 5/248 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     ++LV      NIG VARAM N  LT+L LV P+  +P+ +A   +A+A+ V+ +
Sbjct: 2   AFNNIRVVLVHTSHPGNIGGVARAMKNMGLTRLTLVKPK-AFPAPEALWRAASAEDVLAN 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V   ++EA+    FI  T+AR R     +         L      G+ V I+FGRE  
Sbjct: 61  ATVVETVEEAVQGAQFIVGTSARERRIPWPLQDAHHCGERLYRHAAQGEEVVILFGREDR 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV---SSEKNVKEQNTPA 187
           GL NEE+ L N     P +  +PSLN++ AV ++ +E   + +    ++E++       A
Sbjct: 121 GLLNEELELCNLHCHIPTHESYPSLNLAMAVQIVAYEIRMSQLAGSSATEEDAAWDTPFA 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              ++  F  +LE +L +  +  P    ++++  L  +F R  L   E+ +LRG++S   
Sbjct: 181 PAEDMARFYTHLEQTLIDIEFLDPK-APRQLMRRLKRLFNRVRLDEMELNILRGVLSETQ 239

Query: 248 KFSRQSSR 255
           K + +  +
Sbjct: 240 KKTSRGEK 247


>gi|29654438|ref|NP_820130.1| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|29541705|gb|AAO90644.1| rRNA methylase, SpoU family [Coxiella burnetii RSA 493]
          Length = 240

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 7/238 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   I+LV+P    NIG  ARAM     ++L LV P + +P E+A + +A AD V+ S R
Sbjct: 3   QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +L  A+   + ++ T+AR+R     +  P+E A    + +    N+ I+FGRER GL
Sbjct: 62  VVDDLTAALEGCNLVFGTSARSRTLPWPLKTPRECAE---QSVQHQGNIAIVFGRERSGL 118

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKG 190
           TNEE+A     ++ P    F SLN++QAV ++ +E     +  V            AT  
Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEIRMAKLNAVDPRHQNTPIQQLATAD 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           ++  F  +LE +L +  +  P +  K ++  L  +F R ++   E+ +LRGI++++ +
Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235


>gi|312884217|ref|ZP_07743926.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367990|gb|EFP95533.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 241

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 118/238 (49%), Gaps = 5/238 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    LT L LV+P+     E+  + ++ A  +  + ++ S+
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCSV-DEQTMALASGAGEIAQNAKIVSS 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA++D   +  ++AR+R     +L P+E      E       V ++FGRER GLTNEE
Sbjct: 66  LDEAVSDCQLVVGSSARSRTLEWPMLEPRECGRKFVEE-GESSPVALVFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +        +   P  +   E   
Sbjct: 125 LQKCHFHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLEKERAAFPKAEIPEYSRHEEFEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            L ++E  ++  G+    +   K++  L  +F R     +E+ +LRG++++++K ++ 
Sbjct: 185 LLQHIEKVIKLTGFINDGQ-PNKVMTKLRRLFSRARPEVQEINMLRGVLTSVEKMNKN 241


>gi|209964300|ref|YP_002297215.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
           centenum SW]
 gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
           centenum SW]
          Length = 266

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 114/252 (45%), Positives = 165/252 (65%), Gaps = 1/252 (0%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +    N+  GPV+ILV+PQ+GENIG  ARAM N  LT+LRLVNPRDGWP+EKA ++SA A
Sbjct: 13  SQAALNAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAVAASAGA 72

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V+D  RVF+  +EAIADLH +YAT AR R+  K ++ P+ AA  L+  + +G+ VGI+
Sbjct: 73  TEVLDRARVFTGTREAIADLHKVYATAARVRDMVKDIVTPRRAARDLHAHVAAGRRVGIL 132

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQ 183
           FG ER GL N++I LS+ +IS P+NP F SLN++QAVLL+ +E    +  + E      Q
Sbjct: 133 FGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQAVLLVAYEWWMEAAQAEEFYTHTGQ 192

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           + PATK EL +  D+LE  L++ G++   +KK  M+ ++ +   R  +  +EV    GI+
Sbjct: 193 SPPATKEELHNLFDHLEGELDQTGFYTHPDKKPSMVRNVRNTLQRAHMTEQEVRTFHGII 252

Query: 244 STLDKFSRQSSR 255
           + L    +Q +R
Sbjct: 253 AALVGRKKQRAR 264


>gi|77165123|ref|YP_343648.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
           19707]
 gi|254433993|ref|ZP_05047501.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
           AFC27]
 gi|76883437|gb|ABA58118.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
           19707]
 gi|207090326|gb|EDZ67597.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
           AFC27]
          Length = 247

 Score =  298 bits (764), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 127/241 (52%), Gaps = 3/241 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
                 I+LV+     NIG  ARAM    L  L LVNP+  +P  +A + ++ AD ++  
Sbjct: 2   PLGKVRIVLVETTHPGNIGAAARAMRTMGLCHLYLVNPK-RFPCAEATAMASGADKLLAQ 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +V ++L +AI     ++  +AR+R+    VL  +++ +++ +    G  V I+FGRE  
Sbjct: 61  AKVCTSLAQAITGCQKVFGLSARSRSISWPVLNTRDSGVLVVQEALRGGEVAIVFGRENS 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+N E+   N  +  P NP + SLN++ AV +M +E    S++   ++  E  + A+ G
Sbjct: 121 GLSNLELDRCNYWVHIPSNPTYSSLNLAAAVQVMAYEVRMASMMDDSRHSAESPS-ASIG 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+  F  +LE +L +  +       K ++  L  +F R  L   E+ +LRGI++ + K +
Sbjct: 180 EIEGFFRHLEQTLIKIDFLNS-SNPKLLMRRLRCLFFRAHLNVREINILRGILTAVQKKA 238

Query: 251 R 251
           +
Sbjct: 239 Q 239


>gi|86750840|ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gi|86573868|gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 398

 Score =  298 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 110/251 (43%), Positives = 161/251 (64%), Gaps = 2/251 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
              GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+  AR S++ AD ++D+
Sbjct: 14  DLAGPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNVHARRSASGADHILDA 73

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V +F  + EA+AD   ++ATTAR  +  K V  P+ AA  +      G   GI+FGRER+
Sbjct: 74  VELFETVGEAVADCTLLFATTARAHDQAKPVRGPEAAAQEMITAAVGGGTAGILFGRERY 133

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
           GL N E+AL+N I++FPVNP F SLN++QAVLLM +E  +++   +    + E++ PA++
Sbjct: 134 GLENHEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPYAMPERSEPASQ 193

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++ +F D L   L+   + RP EK+  ML +L +IF R +  R+++  L G V  + + 
Sbjct: 194 HQMTAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMDPTRQDIHTLHGAVMAIAE- 252

Query: 250 SRQSSRRNNVL 260
            R+   +  VL
Sbjct: 253 GRKGPAKGGVL 263


>gi|167854979|ref|ZP_02477754.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis
           29755]
 gi|167853936|gb|EDS25175.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus parasuis
           29755]
          Length = 242

 Score =  298 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 133/244 (54%), Gaps = 7/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                IIL++     NIG  ARAM    L++LRLV P+     E+A + +A A  V+D+V
Sbjct: 3   LNQIQIILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQAI-DEQAIALAAGAKDVLDNV 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++++++  AIAD   +  T+AR R+   S++ P++   +  +R   G  V I+FGRER G
Sbjct: 62  QIYADIDSAIADCQLVIGTSARLRHLQNSLVEPRQCGKLAIQRAEQG-KVAIVFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKG 190
           LTNEE+   +  ++FP NP + SLN++ AV L  +E     +   EK +++      T  
Sbjct: 121 LTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            L  F  + E   +E G+ R     + ++  L  ++ R EL   E+ LLRG+++ ++K+S
Sbjct: 181 ALEHFFAHTERLYKELGFIRN----EAVMLKLRRLYQRAELETNELNLLRGMLTAVEKYS 236

Query: 251 RQSS 254
            +  
Sbjct: 237 LKQK 240


>gi|304415209|ref|ZP_07395920.1| putative RNA methyltransferase [Candidatus Regiella insecticola
           LSR1]
 gi|304282943|gb|EFL91395.1| putative RNA methyltransferase [Candidatus Regiella insecticola
           LSR1]
          Length = 260

 Score =  298 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 19/260 (7%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              IILV+P    NIG  ARAM    LT+L LV+P +   S    + +A A  VID  ++
Sbjct: 4   NIRIILVEPSHPGNIGSAARAMKTMGLTELYLVDPLEKIDS-HTIALAAGASNVIDKAKI 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL +A+A+   I  T+AR+R +   +L P+E  +           V ++FGRER GLT
Sbjct: 63  VDNLDQAVAECSLIIGTSARSRTHAWPMLHPRECGVKSVSEAH-FAPVALVFGRERSGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK---- 189
           N E+   +  +  P NP + SLN++ AV ++ +E     + ++    +  +   +     
Sbjct: 122 NHELQKCHFHVEIPTNPEYSSLNLAMAVQVIAYEIRNAWLDATRVVTEPPSNLPSSLPSC 181

Query: 190 ------------GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
                        +L  F   LE  L + G+ R      +++  L  +F R  L   E+ 
Sbjct: 182 AVKQKTALYPPNEDLERFYQCLEQVLGDIGFIRQAH-PGQIMTKLRRLFTRARLETVELH 240

Query: 238 LLRGIVSTLDKFSRQSSRRN 257
           +LRGI+  +D+  +  +  +
Sbjct: 241 ILRGILHLIDESKKHHAPED 260


>gi|219870434|ref|YP_002474809.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|219690638|gb|ACL31861.1| tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 242

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 7/244 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                IIL++     NIG  ARAM    L++LRLV P+     E+A + +A A  V+D+V
Sbjct: 3   LNQIQIILIETSHSGNIGSAARAMKTMGLSRLRLVAPKQAI-DEQAIALAAGAKDVLDNV 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++++++  AIAD   +  T+AR R    S++ P++   +  +R   G  V I+FGRER G
Sbjct: 62  QIYADIDSAIADCQLVIGTSARLRYLQNSLVEPRQCGKLAIQRAEQG-KVAIVFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-NVKEQNTPATKG 190
           LTNEE+   +  ++FP NP + SLN++ AV L  +E     +   EK +++      T  
Sbjct: 121 LTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLACYELRMAWLDLQEKTDIQPLAEYPTSE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            L  F  + E   +E G+ R     + ++  L  ++ R EL   E+ LLRG+++ ++K+S
Sbjct: 181 ALEHFFAHTERLYKELGFIRN----EAVMLKLRRLYQRAELETNELNLLRGMLTAVEKYS 236

Query: 251 RQSS 254
            +  
Sbjct: 237 LKQK 240


>gi|85705325|ref|ZP_01036424.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
 gi|85670198|gb|EAQ25060.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
          Length = 247

 Score =  298 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 147/247 (59%), Gaps = 1/247 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  +   P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+E+A + ++ A  +
Sbjct: 1   MPTARPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNERAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   +  +  +A+AD  F+ ATTAR R   K VL+P+ A  +  E+I +G+ V ++FG 
Sbjct: 61  LDEALLVESTADAVADCSFVLATTARARGLTKPVLSPERAMGLAAEKIAAGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL N++IA +NAII+ PVNP F SLN+ Q VLL  +E    +     + V   +   
Sbjct: 121 ERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLTAYEWQRAAGQVVPERVDLAKTDW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + E+ +   + E  LEE G+F P  K   M  +L +++ R  + R +V  L G++  +
Sbjct: 181 AAQVEVEALAAHYEERLEEAGFFFPEHKAGSMKTNLRNMWSRMPMTRADVQTLHGVMRQM 240

Query: 247 DKFSRQS 253
            ++  +S
Sbjct: 241 VRWKARS 247


>gi|90406922|ref|ZP_01215113.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
           sp. CNPT3]
 gi|90311964|gb|EAS40058.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
           sp. CNPT3]
          Length = 248

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 119/252 (47%), Gaps = 5/252 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                IIL+      NIG  ARAM    L+ L LV P       K+ + SA A  V+ + 
Sbjct: 2   LDNVRIILIGTSHPGNIGSAARAMKTMGLSNLVLVAPECEV-DGKSIALSAGASDVLKNH 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + F+ L+EAIAD   +   +AR R     +L P+E          +   V I+FGRE  G
Sbjct: 61  QRFATLEEAIADCGLVIGASARPRTLDWPMLDPREMGEKAV-IEGAKYPVAIVFGRENSG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTN+E+   +  +  P NP + SLN++ AV  + +E   + + S  K   E+  P +  E
Sbjct: 120 LTNDELHKCHFHVFIPANPEYSSLNLAMAVQTLSYEIRMSFLASHAKVELEEEYPLS-EE 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L    ++L+ +LE+  +  P      ++  L   F R      E+ + RG+ S++ K   
Sbjct: 179 LEGMFNHLQETLEDTRFIVPAH-PGLVMTKLRRFFNRARPEVVELRMWRGVFSSIQKSL- 236

Query: 252 QSSRRNNVLLQK 263
            S+R+ +   +K
Sbjct: 237 ISARKEDPSQEK 248


>gi|39936894|ref|NP_949170.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|39650751|emb|CAE29274.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 404

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/255 (42%), Positives = 164/255 (64%), Gaps = 2/255 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +   +  GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A+ S+A AD 
Sbjct: 15  KPPAALDGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAAQRSAAGADH 74

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++++V +F ++ EA+ D   ++ATTAR  +  K V  P+ AA  +     SG   GI+FG
Sbjct: 75  ILNAVELFDSVAEAVKDCTLLFATTARAHDQAKPVRGPEAAAQEIVVETASGGTTGIMFG 134

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNT 185
           RER GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E  +++  ++    + E++ 
Sbjct: 135 RERHGLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQNALPYEMPERSP 194

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A++ ++ +F   L   L+   + RP EK+  ML +L +IF R E  ++++  L G+V  
Sbjct: 195 RASQHQIDAFFSNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPSKQDMHTLHGVVMA 254

Query: 246 LDKFSRQSSRRNNVL 260
           +    R+   +  VL
Sbjct: 255 IAD-GRKGPAKGGVL 268


>gi|84516146|ref|ZP_01003506.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
           vestfoldensis SKA53]
 gi|84509842|gb|EAQ06299.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
           vestfoldensis SKA53]
          Length = 246

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 146/246 (59%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  +   P  +L+ PQ+GENIG  AR MWNF L ++R++ PRDGWP+++A + ++ A  +
Sbjct: 1   MPMTNPQPAFVLIRPQMGENIGAAARGMWNFGLDRMRVIAPRDGWPNQRAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++F +   AIAD  F+YATTAR R   K VL+P+ A      RI +G  V ++FG 
Sbjct: 61  LDEAQLFEDTAAAIADCDFVYATTARPRGLTKPVLSPEAAMQDAYARIAAGGKVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           ER G+ N++IA +NAIIS PVNP FPSLN++Q VLL+ +E    +              A
Sbjct: 121 ERAGMENDDIARANAIISVPVNPDFPSLNLAQCVLLLGYEWRRVTGEVVALRHDAPGDWA 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T+ E+    D+ +  L+E G+F P  K   M  +L +++ R  L R +V +L GI+  + 
Sbjct: 181 TQLEVEKLADHYQDRLDEAGFFFPDHKAANMQMNLRNLWSRLPLTRADVQMLHGILRQMV 240

Query: 248 KFSRQS 253
           ++  + 
Sbjct: 241 RWKERG 246


>gi|172037914|ref|YP_001804415.1| RNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171699368|gb|ACB52349.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. ATCC
           51142]
          Length = 247

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 4/249 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +++     I+LV+P    N+G VAR M N  L QL LV P     S++A+  + +   V+
Sbjct: 3   ESALTRVRIVLVEPAGPLNVGSVARVMKNMGLNQLILVKPHCDRLSDEAKLMAVHGIDVL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +V   + EA+   H I ATT R+ +    +  P+EA   L   +    N  ++FG E
Sbjct: 63  EKSQVVHTIPEALQGCHRIIATTGRSLSLPTHLETPREALPWL---LTENFNTALLFGPE 119

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL NEE+  +   +  P N  + SLN++QAV +  +E  + +    E  +     PA+
Sbjct: 120 DRGLNNEELNYAQRFVCIPANSDYSSLNLAQAVAVCSYELHQAAQNPIESKLDPSFEPAS 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L  +  +LE  L + GY  P   K ++ +    ++ +  L  EEV LLRGI+  +D 
Sbjct: 180 FEALEGYYQHLEAVLLKIGYLYPHTAKARL-EKFRRLYNKANLTNEEVALLRGILRQVDW 238

Query: 249 FSRQSSRRN 257
             +    + 
Sbjct: 239 VCQFIPPKK 247


>gi|148264087|ref|YP_001230793.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146397587|gb|ABQ26220.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
           uraniireducens Rf4]
          Length = 245

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 6/249 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +S     I+LV  Q   NIGMV RAM N  LT LRLVNP       +A   + +A  ++D
Sbjct: 2   DSKGTIAIVLVGTQSPGNIGMVCRAMKNMGLTDLRLVNP-CQVDHPEALKFAVSARDLLD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           S R+FS+L+EA+ D     ATT R+    + +  P+E A  +N +      V ++FGRE 
Sbjct: 61  SARIFSSLEEALEDCEISVATTRRHGKYRQEISTPEEIAARVNAQAG-MHRVALVFGRED 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLT +E+A+     + P    + SLN++QAVL+  +E  ++  VS      E    A  
Sbjct: 120 SGLTTDEVAVCRWQSTIPTADDYGSLNLAQAVLIFCYELFKDKGVSP---ASEPRPLAGS 176

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             + S    +E +L   G+  P +    ++  L  I+ R EL   EV +LRG++S +D  
Sbjct: 177 AAMESLYGQMERTLLRIGFLNP-QNPAHLMRTLRRIYSRAELDEREVAVLRGMMSQIDWA 235

Query: 250 SRQSSRRNN 258
           + +   +  
Sbjct: 236 ASEFKGKKG 244


>gi|254461267|ref|ZP_05074683.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
 gi|206677856|gb|EDZ42343.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 247

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 149/246 (60%), Gaps = 1/246 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +      P  +LV PQ+GENIG  +RAMWNF+L ++RLV PRDGWP+ KA + ++ A  +
Sbjct: 1   MPTEQPQPSFVLVRPQMGENIGAASRAMWNFSLDRMRLVAPRDGWPNPKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++F    EA+ D  +++ATTAR R   K   +P+ A  +  E+I  G+ V ++FG 
Sbjct: 61  LDEAQLFQTTAEAVEDCSYVFATTARQRGLTKPAFSPEGAMKLAAEKIAQGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186
           ER G+ N++IA +NA+I+ PVN  F SLN++Q VLL+ +E       ++ E+    +   
Sbjct: 121 ERAGMENDDIARANAVINVPVNSEFGSLNLAQCVLLIGYEWQRQVGNITHERTEMAKTVW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A++GE  +   + E  L++ G+F P EK + M  +L +++ R  L R +V +L G++  +
Sbjct: 181 ASQGETEALAKHYEDRLDDAGFFFPPEKVESMQMNLRNMWSRMPLTRADVQMLHGVLRQM 240

Query: 247 DKFSRQ 252
            ++  +
Sbjct: 241 VRWKNK 246


>gi|149204047|ref|ZP_01881015.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           TM1035]
 gi|149142489|gb|EDM30534.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           TM1035]
          Length = 247

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 147/247 (59%), Gaps = 1/247 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +    P  +LV PQ+GENIG  ARAMWNF L ++RLV PRDGWP+ KA + ++ A  +
Sbjct: 1   MPSDRPQPAFVLVRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPKADAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   + ++   A+ D  ++ ATTAR R   K VL+P+ A +V  E+I +G+ V ++FG 
Sbjct: 61  LDEALLVADTAAAVGDCTYVLATTARARGLTKPVLSPERAMVVAAEKIAAGEKVAVLFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER GL N++IA +NAII+ PVNP F SLN+ Q VLLM +E    +     + V   +   
Sbjct: 121 ERAGLENDDIARANAIINVPVNPEFASLNLGQCVLLMAYEWQRAAGQVVPERVDLAKTDW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + E+ +   + E  LEE G+F P  K + M  +L +++ R  + R +V  L G++  +
Sbjct: 181 AAQVEVEALAAHYEERLEEAGFFFPEHKVESMKTNLRNMWSRMPMTRADVQTLHGVMRQM 240

Query: 247 DKFSRQS 253
            ++  + 
Sbjct: 241 VRWKARG 247


>gi|257465416|ref|ZP_05629787.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
 gi|257451076|gb|EEV25119.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
          Length = 251

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 14/257 (5%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M P   ++ N+     I+L++     NIG  ARAM    LTQL LV+P+     E+A S 
Sbjct: 1   MQPNRTKM-NNLDQIKIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKQPI-DEQAVSL 58

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +A A  V+D+ + F++ +EAIAD H +  T+AR R+   +++ P++   +  +    G  
Sbjct: 59  AAGAKDVLDNAQTFASFEEAIADCHIVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKG-K 117

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--- 177
           V ++FGRER GLTNEE+   +  ++ P NP + SLN++ AV L  +E     +   +   
Sbjct: 118 VALVFGRERIGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEVRMAWLAQQDLQK 177

Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
                 + E+    +   L  F ++ E   +E G+ R       ++  L  ++ R  L  
Sbjct: 178 NSQISPLAERAAYPSNEALEYFFEHTERLYKELGFIRN----DAVMLKLRRLYQRARLET 233

Query: 234 EEVFLLRGIVSTLDKFS 250
            E+ LLRG+++ ++K+ 
Sbjct: 234 NELNLLRGMLTAVEKYH 250


>gi|329890697|ref|ZP_08269040.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845998|gb|EGF95562.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 261

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 144/241 (59%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              PV++L   Q+ +NIG VAR M NF L++LRLV+PRDGWP ++A ++++ AD V+D V
Sbjct: 4   LTPPVVVLDKSQMADNIGAVARVMANFGLSELRLVSPRDGWPQDRAWATASGADWVLDGV 63

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VF ++ EAIADL+ ++ATTAR R   + V  P+E+A +L +   SG   G++FG ER G
Sbjct: 64  KVFDSVAEAIADLNTVFATTARPRETRQPVRTPRESARILYDDTASGLKTGLLFGGERAG 123

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L   +IAL   I + P++P   SLN++QAV +  +E     + +     +E   PA+   
Sbjct: 124 LETGDIALCAGITTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRFREGEPPASNDL 183

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           LL   ++LE  L+  G+F P EK++ M  +L  +  R     +EV  +RG +  L K   
Sbjct: 184 LLGMYEHLEAELDNGGFFYPPEKRRSMSQNLRVMLGRAAFTEQEVATMRGAIHALAKGRG 243

Query: 252 Q 252
           +
Sbjct: 244 R 244


>gi|114707293|ref|ZP_01440190.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537174|gb|EAU40301.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 256

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/240 (47%), Positives = 164/240 (68%), Gaps = 2/240 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P IILV+PQ+GENIGMVARAM NF L  LRLV PRDGWP+EKAR++++ AD V+D+ RV
Sbjct: 12  PPAIILVEPQMGENIGMVARAMANFELADLRLVKPRDGWPNEKARATASRADHVLDAARV 71

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L++A+ADL  +YATTAR R+++K V  P+EAA  L     +G   G+IFGRE++GL 
Sbjct: 72  FEKLEDALADLSLVYATTARARDSYKPVRGPEEAAERLVAHAPAG-KTGVIFGREKYGLE 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGEL 192
           N+E+ L++ I++FPVNP F SLNI+QAVLL+ +     S    + +     N PA K +L
Sbjct: 131 NDEVGLADEIVTFPVNPKFASLNIAQAVLLVSYAWRNASNPSKTPRFSAPPNPPAEKADL 190

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
               D+LE  L+ R YF P EK++ ++ +L ++  + +   +EV  LRG++ +LD+ ++ 
Sbjct: 191 YRLFDHLEAMLDCRNYFFPPEKREALVQNLRTMLTKAQFSEQEVRSLRGVLKSLDRPAQH 250


>gi|89068982|ref|ZP_01156364.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
           HTCC2516]
 gi|89045563|gb|EAR51627.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
           HTCC2516]
          Length = 247

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 93/247 (37%), Positives = 147/247 (59%), Gaps = 1/247 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +      P  +L+ PQ+GENIG  ARAMWNF L ++RLV PRDGWP+  A + ++ A  +
Sbjct: 1   MPTDRPQPAFVLLRPQMGENIGAAARAMWNFGLDRMRLVAPRDGWPNPSAVALASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++F   + AI+D  F+YATTAR R   K V+ P+ A      R+  G+ V ++FG 
Sbjct: 61  LDEAQLFDTTEAAISDTTFVYATTARPRELTKPVMTPEAAMSDAAARVARGEKVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTP 186
           ER G+ N +IA ++AI+S PVNP FPSLN++Q VLL+ +E    +  ++   +K ++   
Sbjct: 121 ERAGMENADIAAASAIVSVPVNPDFPSLNLAQCVLLLGYEWRRATSQTAPVRLKGQRTEL 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + E+    D+ E  L E G+F P  K + M  +L +++ R  L R +V +L GI+  +
Sbjct: 181 AERLEVERLGDHYEERLAEAGFFFPEHKAEGMRLNLRNLWSRMPLTRADVQMLHGILRQM 240

Query: 247 DKFSRQS 253
            ++  + 
Sbjct: 241 VRWKERG 247


>gi|260912947|ref|ZP_05919432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
           dagmatis ATCC 43325]
 gi|260632937|gb|EEX51103.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
           dagmatis ATCC 43325]
          Length = 241

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 9/246 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     NIG  ARAM    L+ L LV PR     E+A + SA A+ V+   
Sbjct: 2   LDNIRIVLVETSHSGNIGSAARAMKTMGLSHLYLVAPRQAI-DEQAIALSAGAEDVVKQA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  +A+AD   +  T+AR R+   +++ P++ A+   E + SGQ V I+FGRER G
Sbjct: 61  VIVDSFDKAVADCSLVVGTSARLRHLQNTLIEPRKCAMKAVEAVKSGQ-VAIVFGRERIG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN---TPAT 188
           LTNEE+      ++ P NP + SLN++ AV L+ +E     +   E ++           
Sbjct: 120 LTNEELLKCRYHLTIPANPEYSSLNLAMAVQLVCYELRMAFLSVKEMSLSLSTIGKIYPN 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++  F  + E    E G+     + + ++  L  ++ R EL + E+ +LRG++S ++K
Sbjct: 180 FSDIEHFFQHTERLYTELGFI----QNQSVMQKLRRLYQRAELEKNELNILRGMLSAVEK 235

Query: 249 FSRQSS 254
             + SS
Sbjct: 236 RIKSSS 241


>gi|224824740|ref|ZP_03697847.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
           2002]
 gi|224603233|gb|EEG09409.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
           2002]
          Length = 254

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 135/252 (53%), Gaps = 3/252 (1%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            P++ +  K   ++L  P    NIG  ARAM    L++L LV P+  +PS +A + ++ A
Sbjct: 3   KPEVPDFLKNIRVVLARPSHPGNIGSAARAMKTMGLSRLYLVEPK-TFPSPEADTLASGA 61

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             ++    V + L EA++D+    A T+R R     +  P++    L  R   G+ V ++
Sbjct: 62  VDLLQHAVVVNTLAEALSDVTVACALTSRRRELTTPLSTPRQTTPELVARARDGEQVALV 121

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FG E +GL+ +E+   N +++ P NP + SLN++ AV +M +E   ++ V  +  ++ + 
Sbjct: 122 FGNETFGLSIDEVEQCNRLVTIPGNPEYFSLNLAMAVQVMTYELFSHTGVDVDY-LRAEA 180

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             AT+ E+  F  +L+ +L + GY       ++++  L ++F R  L+REE+ +LRG + 
Sbjct: 181 ESATRDEVEGFCGHLDQTLADIGY-YERRNGERLMRRLRTLFNRAHLLREEIDILRGFLK 239

Query: 245 TLDKFSRQSSRR 256
            + + + +   R
Sbjct: 240 QVQRVAHRDDGR 251


>gi|316932884|ref|YP_004107866.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
 gi|315600598|gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
          Length = 400

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 107/254 (42%), Positives = 165/254 (64%), Gaps = 2/254 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +  GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A  +SA AD ++++
Sbjct: 14  ALDGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAATRASAGADHILNA 73

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V +F ++ +A+AD   ++ATTAR  +  K V  P+ AA  +   I +G   GI+FGRER 
Sbjct: 74  VELFDSVADAVADCALLFATTARAHDQAKPVRGPEAAAQEIVASIATGVTAGILFGRERH 133

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
           GL N+E+AL+N I++FPVNP F SLN++QAVLLM +E  +++   +    + E++ PA++
Sbjct: 134 GLENDEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATGGALPFAMPERSEPASQ 193

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++ +F D L   L+   +  P EK+  ML +L +IF R +  ++++  L G +  + + 
Sbjct: 194 HQMQAFFDNLVAELDRVEFLCPPEKRDTMLVNLRNIFTRMDPTKQDIHTLHGAIMAIAE- 252

Query: 250 SRQSSRRNNVLLQK 263
            R+   +  VL  +
Sbjct: 253 GRKGPAKGGVLDGE 266


>gi|110679943|ref|YP_682950.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
 gi|109456059|gb|ABG32264.1| RNA methyltransferase, TrmH family [Roseobacter denitrificans OCh
           114]
          Length = 251

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 146/240 (60%), Gaps = 1/240 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV PQ+GENIG  ARAMWNF L  +R+V PRDGWP++ A + ++ A  V+D+ ++  
Sbjct: 12  AFVLVRPQMGENIGASARAMWNFGLEHMRVVAPRDGWPNQAAVALASGAGRVLDNAQLSD 71

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L  ++ D  F++ATTAR R+  K V +P+EA  V  +RI +G+ + ++FG ER GL N+
Sbjct: 72  DLPGSVGDCSFVFATTARPRDLTKPVFSPEEAMRVAAQRIAAGERIAVLFGPERAGLEND 131

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELLS 194
           +IA +NAIIS PVNP FPSLN++Q VLL+ +E M  +   +   V    T  A   E+  
Sbjct: 132 DIARANAIISVPVNPAFPSLNLAQCVLLVGYEWMRATHDVTPHTVDMSGTQWADHIEVEH 191

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
              + E  LEE G+F P  K   M  +L + + R  + R +V +L G++  + ++  +  
Sbjct: 192 LATHYEDRLEEMGFFFPAHKSHSMRVNLRNFWSRMPMTRADVQMLHGMMRQMVRWKTRGD 251


>gi|16126759|ref|NP_421323.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|13424077|gb|AAK24491.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
          Length = 251

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 104/252 (41%), Positives = 146/252 (57%), Gaps = 7/252 (2%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +PQL ENIG VAR M NF L+ LRLV PRDGWP E+A +S++ A   +D  +VF  L
Sbjct: 2   ILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVFDTL 61

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           + AIADL  +YATTAR R     +  P+E+A  L E +  G+ VG++FG ER GL  ++I
Sbjct: 62  EAAIADLKLVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGLETDDI 121

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSFL 196
           AL  AI+S P++  F SLN++QAV +  +E           K  +    PA +  LL   
Sbjct: 122 ALCQAIVSIPIDERFRSLNLAQAVSINAYEWKMTQDDRPWRKFEQNVEEPADQAALLGLY 181

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
            +LE  LE+ G++ P EKK  M+ +L +   R  L  +EV   RG+++ L K       R
Sbjct: 182 GHLEDELEKAGFYHPPEKKPSMVRNLRAPLARARLSDQEVRTFRGVITALSKG------R 235

Query: 257 NNVLLQKTEKSE 268
             VL +  EK++
Sbjct: 236 GRVLAKLAEKAK 247


>gi|254491749|ref|ZP_05104928.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
           thiooxidans DMS010]
 gi|224463227|gb|EEF79497.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
           thiooxydans DMS010]
          Length = 253

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 4/243 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S      +LV      NIG  ARAM    L+ L LV+P+  +PS +A + ++ AD ++ +
Sbjct: 14  SMDNIRFVLVGTTHPGNIGAAARAMKTMGLSNLHLVSPK-LYPSAEATARASGADDILHT 72

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +V  +L EA+   H  +A +AR R+    V+ P++ A+   E+     ++ I+FGRE  
Sbjct: 73  AQVHDSLDEALVGCHHAFAMSARLRHLPVPVVNPRQ-AVEQLEKFDDNTHIAIVFGREHS 131

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATK 189
           GL+NEE+     +I+ P NP + SLN++ AV ++ +E   +         + EQ    T 
Sbjct: 132 GLSNEELDRCQYLINIPANPDYSSLNLAAAVQVLAYELKMSFQPQIDFGRIGEQREAITN 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L    D+ E SL   G+  P E  + ++  +  +F R +L + E+ ++ GI+   +  
Sbjct: 192 DDLAHLYDHFERSLTTIGFLDP-ENPRHLMRRIKRLFNRADLDKNELHIMHGILRAAETK 250

Query: 250 SRQ 252
           +++
Sbjct: 251 AKE 253


>gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133739252|emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  295 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             +LV+     NIG  ARA+ N   ++L LVNPR  D    E+A + ++ A  ++ S R+
Sbjct: 8   RFVLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDILASARI 67

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +++EA+AD ++  A TAR R     V+ P+E A  L +    G    +IFG ER+GL 
Sbjct: 68  VGSIEEALADCNYAAAVTARLREFSPPVITPRELATRLADEA--GLQAAVIFGNERFGLP 125

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPATKG 190
           NE +   N +I+ P NP + SLN++QAV ++ +E    +IV +     N+  Q   A   
Sbjct: 126 NEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMAAIVDAPSAVSNIGFQGEAAGMA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++     +LE +L    +    +  KK++  L  +F R +L  EEV +LRGI   +    
Sbjct: 186 QIEGMYAHLEQALVAIDFLD-ADNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQILAKQ 244

Query: 251 RQSS 254
           +  S
Sbjct: 245 KNGS 248


>gi|288959273|ref|YP_003449614.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
 gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
          Length = 258

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 103/251 (41%), Positives = 157/251 (62%), Gaps = 1/251 (0%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P   +   GP +ILV PQLGENIG  ARAM N  LT LRLV PRDGWP+ KA ++++ AD
Sbjct: 7   PTRDSILGGPAVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGAD 66

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            VI++ R+F    EA+ADL  ++ATT R R+  +  + P+ AA  + ER  +GQ +G++F
Sbjct: 67  PVIENARIFETTAEAVADLEAVFATTVRTRDMIQRFVTPRVAAGEMRERYAAGQKLGVMF 126

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQN 184
           G ER GL N+++ L+  +++ P+NP F SLN++QAVLL+ +E  +    + ++ +   Q 
Sbjct: 127 GPERTGLVNDDLTLAQTLVTVPLNPAFSSLNLAQAVLLIGYEWFQAGDRTPDRFLHTGQT 186

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PAT  E ++F + LE +L+  G+F   EK+  M+  L + F R E+  +EV    G+V+
Sbjct: 187 RPATMAERVNFFERLEAALDRTGFFTSEEKRPSMVRTLRNAFERMEMTEQEVRTFHGVVA 246

Query: 245 TLDKFSRQSSR 255
            L + SR+   
Sbjct: 247 ALVQGSRRKGE 257


>gi|67923340|ref|ZP_00516822.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
 gi|67854812|gb|EAM50089.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
          Length = 248

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 4/249 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + +     I+LV+P    N+G VAR M N  L QL LV P      ++AR  + +   V+
Sbjct: 3   ETALARVRIVLVEPAGPLNVGSVARVMKNMGLHQLILVKPHCDRLGDEARLMAVHGVDVL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +V   + EA+     I ATT R+ +    +  P+ A   L   +  G N  ++FG E
Sbjct: 63  EQSQVVETIPEALQGCQRIIATTGRSLSLPTHLETPRGALPWL---LAEGLNSALMFGTE 119

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL NEE+  +   +S P NP +PSLN++QAV +  +E  + +    E         A+
Sbjct: 120 DRGLNNEELKYAQRFVSIPANPDYPSLNLAQAVAVCSYELYQAAQDPLESETDSYFEGAS 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L  +  +LE  L + GY  P   K ++ +    ++ +  L  EEV LLRGI+  ++ 
Sbjct: 180 FELLEGYYQHLEEVLLKIGYLYPHTAKARL-EKFRRLYNKANLTPEEVALLRGILRQVNW 238

Query: 249 FSRQSSRRN 257
            ++    +N
Sbjct: 239 AAQFIPSKN 247


>gi|254282434|ref|ZP_04957402.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           NOR51-B]
 gi|219678637|gb|EED34986.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           NOR51-B]
          Length = 244

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 6/245 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     I+LV      NIG  ARAM N  L++L LV PR+ +P+ +A   +A+A  V++S
Sbjct: 2   NTDNIEIVLVHTSSPGNIGGAARAMKNMGLSRLTLVAPRE-FPAPEATWRAASASDVLNS 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            R+  ++ EAIAD  F+  T+AR R     VL P+  A  L       + V I+FGRE  
Sbjct: 61  ARIVDSVDEAIADSQFVVGTSARGRRIPWPVLDPRRCAERL-AVSSRTERVAILFGREDR 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN---TPA 187
           GLTNEE+   N     P +  + SLN++ AV ++ +E     +        +++      
Sbjct: 120 GLTNEELQRCNLHCHIPSHEDYSSLNLAMAVQIVAYELRMWGLAERLPEAADEDWDVPFV 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E+  F  +LE +L + G+  P    ++++  L  +F R  +   E+ +LRGI++   
Sbjct: 180 TTEEMTRFYRHLEETLTDIGFLDPA-APRQLMPRLARLFNRVRIDDMEMGILRGILTEAQ 238

Query: 248 KFSRQ 252
           K + +
Sbjct: 239 KSAGK 243


>gi|240949393|ref|ZP_04753734.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240296142|gb|EER46798.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 244

 Score =  294 bits (754), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 13/249 (5%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      I+L++     NIG  ARAM    L QL LV+P+     E+A S +A A  V+D
Sbjct: 2   NILDQIKIVLIETSHSGNIGSTARAMKTMGLAQLCLVSPKQPI-DEQAVSLAAGAKDVLD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + + F++ +EAIAD   +  T+AR R+   +++ P++   +  +    G  V ++FGRER
Sbjct: 61  NTQTFASFEEAIADCQLVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKG-KVALVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------KNVKE 182
            GLTNEE+   +  ++ P NP + SLN++ AV L  +E     +   +         + E
Sbjct: 120 IGLTNEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEIRMAWLAQQDLQKNSQIVPLTE 179

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            +   +   L  F ++ E   +E G+ R       ++  L  ++ R  L   E+ LLRG+
Sbjct: 180 SSDYPSNEALEYFFEHTERLYKELGFIRN----DAVMLKLRRLYQRARLETNELNLLRGM 235

Query: 243 VSTLDKFSR 251
           ++ ++K+ R
Sbjct: 236 LTAIEKYRR 244


>gi|153208365|ref|ZP_01946703.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161831388|ref|YP_001597003.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|165919350|ref|ZP_02219436.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           334]
 gi|212212468|ref|YP_002303404.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
 gi|212218566|ref|YP_002305353.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
 gi|120576022|gb|EAX32646.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161763255|gb|ABX78897.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           331]
 gi|165916949|gb|EDR35553.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           334]
 gi|212010878|gb|ACJ18259.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
 gi|212012828|gb|ACJ20208.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
          Length = 240

 Score =  294 bits (753), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 7/238 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   I+LV+P    NIG  ARAM     ++L LV P + +P E+A + +A AD V+ S R
Sbjct: 3   QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +L  A+   + ++ T+AR+R     +   +E A    + +    N+ I+FGRER GL
Sbjct: 62  VVDDLTAALEGCNLVFGTSARSRTLPWPLKTARECAE---QSVQHQGNIAIVFGRERSGL 118

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKG 190
           TNEE+A     ++ P    F SLN++QAV ++ +E     +  V            AT  
Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDPRHQNTPIQQLATAD 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           ++  F  +LE +L +  +  P +  K ++  L  +F R ++   E+ +LRGI++++ +
Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235


>gi|154248490|ref|YP_001419448.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154162575|gb|ABS69791.1| RNA methyltransferase, TrmH family, group 1 [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score =  294 bits (753), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 105/262 (40%), Positives = 162/262 (61%), Gaps = 6/262 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A GPV+ILV+PQLG+NIG  ARAM NF L++LR+VNPR+GWPSE AR  SA AD ++   
Sbjct: 14  AGGPVVILVEPQLGQNIGSAARAMGNFGLSRLRIVNPREGWPSEPARIFSAGADRILAEA 73

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++ +L+ A+  +++ +A TAR R   K VL     A     R+  G++V ++FGRER G
Sbjct: 74  VLYPDLRSALVGVNYAFAATARERGMAKPVLGADAVAQEARSRLAGGEDVALVFGRERTG 133

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190
           L  EE++L +AI++ PVNP F SLN++  V +  +E  +     +        +P A KG
Sbjct: 134 LYTEEVSLCDAILTLPVNPAFASLNLAMCVAVTGYEWFKAETGGALPFAPPDRSPLADKG 193

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD--- 247
           +LL+F D+LE +LE+ G+FR  EK    + +L +IF R  L R+++  L G V+ L+   
Sbjct: 194 DLLAFFDHLEGALEQSGFFRSPEKAPSTIRNLRNIFHRLGLTRQDLATLHGAVTALEEGR 253

Query: 248 --KFSRQSSRRNNVLLQKTEKS 267
             + +R++ R  +  + K+ K+
Sbjct: 254 AGRDARKTIRIADAAIHKSRKA 275


>gi|83592035|ref|YP_425787.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
           11170]
 gi|83574949|gb|ABC21500.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
           11170]
          Length = 279

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/236 (44%), Positives = 154/236 (65%), Gaps = 1/236 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
             P I+LV PQL ENIGMVARAM N  LT LRLV PR+ W +EKA +S++ AD ++   R
Sbjct: 16  NAPAIVLVRPQLAENIGMVARAMLNCGLTALRLVAPREDWLAEKAIASASGADGLLREAR 75

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F   + AIAD++ +YATTAR R+  K VL P+ AA  L  ++ +G+   ++FG ER GL
Sbjct: 76  FFETTEAAIADINRVYATTARRRDMIKRVLTPRGAAERLRTQVAAGERCAVMFGPERTGL 135

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGE 191
           +N+++AL++AI+  P+NP + SLN++QAVLL+ +E  +    +  E+ V     PAT+GE
Sbjct: 136 SNDDVALADAIVEVPLNPAYCSLNLAQAVLLLGYEWYQAGDATPAEQLVTNDTQPATRGE 195

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           LL F D+LE  L++ G+ R   K+  M+ +L ++F R +L  +E+  L G+V  L 
Sbjct: 196 LLGFFDHLERELDDCGFLRNAAKRPGMVRNLRNLFERADLTEQEIRTLHGVVKELR 251


>gi|310816156|ref|YP_003964120.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
           vulgare Y25]
 gi|308754891|gb|ADO42820.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
           vulgare Y25]
          Length = 245

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 1/242 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  +   P  +L+ PQ+GENIG  ARAMWNF L ++R++ PRDGWP+EKA + ++ A  +
Sbjct: 1   MPTATPQPAFVLIQPQMGENIGAAARAMWNFGLDRMRVIAPRDGWPNEKAVAMASGAGRL 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D  ++++   EAIAD  F+YATTAR R   K V++P+ A    + RI  G+ V I+FG 
Sbjct: 61  LDEAQLYATTAEAIADCTFVYATTARPRGLTKPVMSPEAALRDAHARIARGEKVAIMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TP 186
           ER G+ N++IA +N II+ PVNP FPSLN++Q VLL  +E    +    ++ ++      
Sbjct: 121 ERAGMENDDIARANVIITVPVNPEFPSLNLAQCVLLTAYEWRRAADAVVDERIEMAGAEW 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A   ++ +   + E  L+E G+F P  K + M  +L +++ R  L R +   L GI+  L
Sbjct: 181 ANNADIEALATHFEERLDEAGFFFPEHKAQSMKLNLRNLWSRMPLTRADTATLHGILRQL 240

Query: 247 DK 248
            +
Sbjct: 241 LR 242


>gi|260773392|ref|ZP_05882308.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
 gi|260612531|gb|EEX37734.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
          Length = 242

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 5/239 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV      NIG  ARAM    L+Q+ LV P     ++    ++  +D  + + +V S 
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQMVLVAPECAVDAQAIALAAGASDIAL-NAQVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+A+   +  ++AR+R     +L P++              V ++FGRER GLTNEE
Sbjct: 66  LSEAVAECGLVVGSSARSRTLEWPMLDPRQCGEQF-AIEGQTHPVAVVFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKGELLS 194
           + L +  +  P NP + SLN++ AV  + +E     +   +               EL  
Sbjct: 125 LQLCHYHVCIPANPEYSSLNLAMAVQTLCYEIRVAHLTHQQGEFPSPTMVDYPRHQELDR 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           F  +LE  L E  +  P +   ++++ L  +F R     +E+ +LRG+++ ++K  RQ 
Sbjct: 185 FYQHLERVLLESEFISPSQ-PGQVMNKLRRLFSRARPEAQEINILRGVLTAVEKKMRQP 242


>gi|254437829|ref|ZP_05051323.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
 gi|198253275|gb|EDY77589.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
          Length = 257

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/242 (38%), Positives = 142/242 (58%), Gaps = 1/242 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +   A  P I+L+ PQ+GENIG  ARAMWNF L ++R+V PRDGWP+  A + ++ A  +
Sbjct: 13  MPTDAPQPTIVLIRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRL 72

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   V  ++   IAD  ++YATTAR R   K V +P+ A      RI  G+ V +IFG 
Sbjct: 73  LDEAEVSDDVASGIADRTYVYATTARPRELTKPVFSPEAAMRDAAARIARGEKVAVIFGP 132

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TP 186
           ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E         +  V+ Q   P
Sbjct: 133 ERSGMDNSDIAHANAIITVPVNPDFPSLNLAQCVLLVGYEWRRAVAEVVDVVVQGQTVEP 192

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + ++ +   + E  L + G+F P  K   M  +L +++ R  + R +V +L G++  L
Sbjct: 193 ADQRDIEALARHYEDRLNDAGFFYPEHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 252

Query: 247 DK 248
            +
Sbjct: 253 LR 254


>gi|119713616|gb|ABL97667.1| RNA methyltransferase [uncultured marine bacterium EB0_39H12]
          Length = 249

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 130/252 (51%), Gaps = 3/252 (1%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M      L        I+LV      NIG  ARAM N    +L LV P++ +PS+ A   
Sbjct: 1   MDDKKNTLLELLDTVKIVLVGTTHPGNIGAAARAMKNMGFRKLILVEPKE-FPSDVATYR 59

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  A  +++   +F+ L++A+AD   +  T+AR+R     +L PKE+A  + + +   Q 
Sbjct: 60  SKAAKDILEEAEIFNTLEQAVADCELVIGTSARDRKVPWPILNPKESAETVVKNLPQ-QK 118

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++FGRE  GLTNEE+ L N  +  P +P + SLN++QAV ++V+E    S+  +E   
Sbjct: 119 VALVFGREDRGLTNEELGLCNFHVHIPTDPDYSSLNLAQAVQILVYEIRVASLSDTEDKN 178

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
                 A   +    +++++  +++  ++  V+  +K+L  +   F R  +   E  + R
Sbjct: 179 YWDVELANTQQTEMLINHMDELMQQVEFYD-VDNPRKLLLRVRRFFKRSNIDVMEANIFR 237

Query: 241 GIVSTLDKFSRQ 252
           G+ +T+ K  +Q
Sbjct: 238 GLFATIQKKLKQ 249


>gi|28897368|ref|NP_796973.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838065|ref|ZP_01990732.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
           AQ3810]
 gi|260363565|ref|ZP_05776394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus K5030]
 gi|260876328|ref|ZP_05888683.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AN-5034]
 gi|260898599|ref|ZP_05907095.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
           Peru-466]
 gi|260899301|ref|ZP_05907696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AQ4037]
 gi|28805580|dbj|BAC58857.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748532|gb|EDM59391.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
           AQ3810]
 gi|308086963|gb|EFO36658.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
           Peru-466]
 gi|308092944|gb|EFO42639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AN-5034]
 gi|308106671|gb|EFO44211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AQ4037]
 gi|308112984|gb|EFO50524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus K5030]
 gi|328472609|gb|EGF43472.1| RNA methyltransferase [Vibrio parahaemolyticus 10329]
          Length = 239

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+QL LV+P+     E+  + +A A  +  + +V S 
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEV-DEQTLALAAGAADIAQNAQVVST 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAI D   +  ++AR+R     +L P+E              V ++FGRER GLTNEE
Sbjct: 66  LEEAIEDCGLVVGSSARSRTLEWPMLEPRECGEKFAVE-GQKHPVALVFGRERTGLTNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQNTPATKGELLS 194
           +   +  +  P NP + SLN++ AV  + +E     +   +K     E        EL  
Sbjct: 125 LQKCHYHVCIPANPEYSSLNLAMAVQTLSYEVRVAHLNLEQKQFSPVEVEEYPRHKELEM 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F D+LE  + E  +    E+  ++++ L  +F R     +E+ +LRGI+++++K
Sbjct: 185 FFDHLEKVIVETQFINK-EQPGQVMNKLRRLFSRARPETQELNILRGILTSIEK 237


>gi|159044062|ref|YP_001532856.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
           12]
 gi|157911822|gb|ABV93255.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
           12]
          Length = 255

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/253 (38%), Positives = 152/253 (60%), Gaps = 1/253 (0%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             + ++   P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWPSEKA + ++ A 
Sbjct: 3   RAMTDTPSQPAFVLVRPQMGENIGGSARAMWNFGLDRMRVVAPRDGWPSEKAVAMASGAG 62

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++D   ++ +  EA+AD  +++ATTAR R+  K V+ P+ A       I  GQ V ++F
Sbjct: 63  RLLDEAGLYGSTAEALADADYVFATTARPRDLTKPVVTPERAMEQARALIAEGQRVAVLF 122

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           G ER GL NE+IAL+NAI+S PVNP FPSLN++Q VLL  +E    +  +  + ++   T
Sbjct: 123 GPERAGLENEDIALANAIVSVPVNPAFPSLNLAQCVLLTAYEWGRQTTDTPAEVMEMAGT 182

Query: 186 -PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             A   E+ +  D+ E  +EE G+F P  K + M  ++ +++ R  L   +V  L G++ 
Sbjct: 183 RYANGAEITALGDHFETRMEEAGFFFPDHKAESMKLNMRNMWSRLPLTLADVQTLHGVLR 242

Query: 245 TLDKFSRQSSRRN 257
            L ++  +S   +
Sbjct: 243 QLVRWKDRSGGAS 255


>gi|260776734|ref|ZP_05885629.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607957|gb|EEX34222.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 241

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 5/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    LT L LV+P+     E+A + +A A  ++ + 
Sbjct: 2   LNNVKVVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCEI-DEQAIALAAGAADIVQAA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + + L +A+AD   +  ++AR+R     +L P+E      E+  +   V ++FGRER G
Sbjct: 61  LIVNTLNDAVADCSLVVGSSARSRTLEWPMLEPRECGKKFVEQ-GAMSQVALVFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--NVKEQNTPATK 189
           LTNEE+   +  +  P NP + SLN++ AV  + +E     +   +      E       
Sbjct: 120 LTNEELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLEKQQSQYQPNEVAEYPRH 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  F  +LE    +  +    E+  K+++ L  +F R     +E+ +LRG++++++K 
Sbjct: 180 KELEMFFSHLEKVATKTQFI-SDEQPGKVMNKLRRLFNRARPEAQELNILRGVLTSIEKK 238

Query: 250 SRQ 252
             Q
Sbjct: 239 INQ 241


>gi|258543648|ref|YP_003189081.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634726|dbj|BAI00702.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637782|dbj|BAI03751.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640836|dbj|BAI06798.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643891|dbj|BAI09846.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646946|dbj|BAI12894.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649999|dbj|BAI15940.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652989|dbj|BAI18923.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656043|dbj|BAI21970.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 256

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 150/247 (60%), Gaps = 1/247 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L+     PV+ILV PQ+ ENIG  ARAM N  L  LRLV+PRDGWP E+A  +S+ AD 
Sbjct: 9   PLEPIGNTPVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRTSSGADR 68

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++++  V  ++ +A+ADLH +YAT  R R+  K VL  +  A  L      G  VG++FG
Sbjct: 69  ILEAATVHESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMFG 128

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNT 185
            ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E       +  +  +  +  
Sbjct: 129 PERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPRELMTNETH 188

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            ATKGEL +FL +LE  L++ G+ R  +K+  M+ +L   F R E+  +E+  L G+V  
Sbjct: 189 VATKGELENFLQHLERELDDCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVRE 248

Query: 246 LDKFSRQ 252
           L    R+
Sbjct: 249 LAHPRRK 255


>gi|262172183|ref|ZP_06039861.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
 gi|261893259|gb|EEY39245.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
          Length = 244

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + ++F  
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIFPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P++    L         V ++FGRER GLTN+E
Sbjct: 67  LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S+   +++       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|113460425|ref|YP_718487.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|170717774|ref|YP_001783505.1| RNA methyltransferase [Haemophilus somnus 2336]
 gi|112822468|gb|ABI24557.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|168825903|gb|ACA31274.1| RNA methyltransferase, TrmH family, group 1 [Haemophilus somnus
           2336]
          Length = 246

 Score =  293 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 10/241 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     NIG  ARAM    L QL LV P+ G   E+A + +A A+ V+ S 
Sbjct: 2   LENIKIVLVETSHSGNIGSAARAMKTMGLNQLCLVAPKQGI-DEQAVALAAGAEDVVKSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  +  +A+AD   I  T+AR R+   +++ P+E A  + + + S Q V I+FGRER G
Sbjct: 61  VVADSFSQAVADCSLIIGTSARLRHLQSTLIEPRECAEKVIQSLSS-QKVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPA 187
           LTN+E+   +  ++ P NP + SLN++ AV L+ +E     + S ++  +      N   
Sbjct: 120 LTNDELLKCHYHLTIPANPEYSSLNLAMAVQLISYELRLAWLASLKELKQPFSVIANNYP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  F  + E   ++ G+     + + ++  L  ++ R +L + E+ +LRG++S ++
Sbjct: 180 TFQELEHFFAHTEQLYQQLGFI----QNQGVMKKLRRLYQRVQLEKNELNILRGMLSAVE 235

Query: 248 K 248
           K
Sbjct: 236 K 236


>gi|254419003|ref|ZP_05032727.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185180|gb|EDX80156.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 269

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 96/252 (38%), Positives = 144/252 (57%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M+  +         P +IL   Q+ ENIG VAR M NF LT LRLV PRDGWP E+A ++
Sbjct: 1   MSASSEFAPPDLTPPAVILDKSQMAENIGAVARVMANFGLTDLRLVTPRDGWPQERAWAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V++ VRVF ++ EA+ADL+ ++ATTAR R   + V  P+EA  +L +   SG  
Sbjct: 61  ASGADWVLEGVRVFDSVAEAVADLNTVFATTARPRETRQPVRTPREAGRILYDDTASGLK 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            G++FG ER GL   +IAL   I++ P++P   SLN++QAV +  +E     + +     
Sbjct: 121 TGLLFGGERAGLETTDIALCAGIVTIPIDPKHHSLNLAQAVAINAYEWRTLILDAPPPRF 180

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           ++   PA+   L+   ++LE  LE  G+F P EKK+ M  +L  +  R     +EV  +R
Sbjct: 181 RDSEPPASNDLLVGMYEHLEAELELGGFFYPPEKKRSMSQNLRVMLGRAAFSEQEVATMR 240

Query: 241 GIVSTLDKFSRQ 252
           G +  L K   +
Sbjct: 241 GAIHALAKGRGR 252


>gi|163793629|ref|ZP_02187604.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
 gi|159181431|gb|EDP65946.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
          Length = 264

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/246 (39%), Positives = 149/246 (60%), Gaps = 1/246 (0%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           T  +  + ++  GP ++LV PQLG+NIG  ARAM N  L  +RLV PRDGWP+ +A + +
Sbjct: 4   TDRSRGMADATVGPAVVLVQPQLGDNIGSCARAMLNCGLYDMRLVQPRDGWPNPRAIAMA 63

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A  V+D  RVF    EA ADL+++ ATT R R+  K  L P+ AA+ L +R+  GQ V
Sbjct: 64  SGATAVLDRARVFETTAEACADLNYVLATTTRTRDMKKPALTPRTAALELRKRVALGQGV 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           G++FG ER GL NE++ L++A++S P+NP F SLN++QAVLL+ +E  +    +    + 
Sbjct: 124 GLLFGPERAGLVNEDVTLADAVLSVPLNPGFSSLNLAQAVLLIGYEWYQAEDATPPLTMM 183

Query: 182 EQNTPA-TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           ++++P  T      F   LE  L+E G+F P      +  +L ++F R  +  +EV  L 
Sbjct: 184 DEDSPPVTVKAREFFFTRLEALLDEAGFFYPDHLAPTIKRNLRTLFTRAGMSEQEVQTLH 243

Query: 241 GIVSTL 246
           G++  L
Sbjct: 244 GVLKAL 249


>gi|83311228|ref|YP_421492.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82946069|dbj|BAE50933.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 255

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 99/248 (39%), Positives = 152/248 (61%), Gaps = 1/248 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S  GP IILV PQL ENIG  ARAM N  LT +R+V PR+GW SEKA ++++ AD ++ S
Sbjct: 7   SRPGPAIILVRPQLSENIGTAARAMLNCGLTDMRIVAPREGWLSEKAIAAASGADRLLLS 66

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +VF   K+A+ADL+ ++ATT R+R   K V  P+EAA  +      GQ  G++FG ER 
Sbjct: 67  AKVFEQTKDAVADLNRVWATTGRDRYMTKPVDTPREAAAHMRAAHAEGQTFGVLFGPERT 126

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
           GL N+++A+++ +++ P+NP + SLN++QAVLL+ +E  +     +     K    PATK
Sbjct: 127 GLENDDVAVADTVLTVPLNPEYCSLNLAQAVLLVSYEWHQCEAAETLPPMTKGAEGPATK 186

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            +L+ F ++LE  L+  G+ R  +K+  M+ ++ ++F R  L  +E+  L GIV  L  +
Sbjct: 187 EKLIFFFEHLERELDACGFLRVPDKRPVMVRNIRNMFQRANLTGQEIQTLHGIVHELVTY 246

Query: 250 SRQSSRRN 257
             Q     
Sbjct: 247 RHQKGEGK 254


>gi|27380857|ref|NP_772386.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27354023|dbj|BAC51011.1| bll5746 [Bradyrhizobium japonicum USDA 110]
          Length = 398

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 110/254 (43%), Positives = 169/254 (66%), Gaps = 2/254 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S  GP++ILV+PQLGENIGM ARAM NF L++LR+VNPRDGWP+  A+ ++A AD +++ 
Sbjct: 12  SLDGPIVILVEPQLGENIGMAARAMGNFALSRLRIVNPRDGWPNIAAQRAAAGADYILEK 71

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V +F  + EA+ADL  ++ATTAR  +  K V+ P+ AA  ++  + +G   GI+FGRERW
Sbjct: 72  VELFDTVGEAVADLDLLFATTARPHDQAKPVVGPEAAAAEISGHVATGGKAGILFGRERW 131

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
           GLTNEE+ L+N II+FPVNP F SLN++QAVLL+ +E  + +        + E++  A++
Sbjct: 132 GLTNEEVGLANRIITFPVNPGFASLNLAQAVLLIGYEWFKLATSGELPHAMPERSERASQ 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + + 
Sbjct: 192 HQMQAFFDNLIRELDKVEFLRPAEKRDTMLVNLRNIFSRMEPTKQDMHTLHGVVMAIAE- 250

Query: 250 SRQSSRRNNVLLQK 263
            R+   +  VL  +
Sbjct: 251 GRKGPAKGGVLDGE 264


>gi|329113815|ref|ZP_08242586.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
 gi|326696825|gb|EGE48495.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
          Length = 256

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 148/247 (59%), Gaps = 1/247 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L+     PV+ILV PQ+ ENIG  ARAM N  L  LRLV+PRDGWP E+A  +S+ AD 
Sbjct: 9   PLEPIGNTPVVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRASSGADR 68

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++++  V  ++ +A+ADLH +YAT  R R+  K VL  +  A  L      G  VG++FG
Sbjct: 69  ILEAATVHESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLMFG 128

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNT 185
            ER GL NE++A ++A+I +P+NP F SLN++QAV++M +E       +     +  +  
Sbjct: 129 PERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDQTPPHELMTNETH 188

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            ATKGEL +FL +LE  L+  G+ R  +K+  M+ +L   F R E+  +E+  L G+V  
Sbjct: 189 VATKGELENFLQHLERELDSCGFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVRE 248

Query: 246 LDKFSRQ 252
           L    R+
Sbjct: 249 LAHPRRK 255


>gi|146339760|ref|YP_001204808.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146192566|emb|CAL76571.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 399

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 118/250 (47%), Positives = 168/250 (67%), Gaps = 2/250 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+  A+ ++A AD +ID V
Sbjct: 13  IAGPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHV 72

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R+F  L EAIADL  ++ATTAR+ +  K V+ P+ AA  +  +I SG   GI+FGRER G
Sbjct: 73  RLFETLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIASGGRAGILFGRERSG 132

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKG 190
           LTNEE+A +N II++PVNP F SLN++QAVLLM +E  +     +    + E++  AT+ 
Sbjct: 133 LTNEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTSGALPFAMPERSERATQE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++ +F + L   L+   + RP EK++ ML +L +IF R E  ++++  L G+V  + +  
Sbjct: 193 QMEAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDMHTLHGVVMAIAE-G 251

Query: 251 RQSSRRNNVL 260
           R+   +  VL
Sbjct: 252 RKGPAKGGVL 261


>gi|107028736|ref|YP_625831.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
           1054]
 gi|116690105|ref|YP_835728.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|105897900|gb|ABF80858.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
           1054]
 gi|116648194|gb|ABK08835.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           cenocepacia HI2424]
          Length = 289

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSS 61
            +P           +LV+P    N+G  ARA+     ++L LV PR        +A + +
Sbjct: 32  SSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMA 91

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + AD V+ S  V   L EA++ +H+  A TAR R      LAP+ AA   + ++ +G ++
Sbjct: 92  SGADDVLASAHVVPTLGEALSGVHWSIALTARTREYGPPRLAPRAAATQASAQVGTG-DI 150

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSE 177
            ++FG ER GL NE +   +A+   P NP + SLN++QAV ++ +E      E +   S 
Sbjct: 151 ALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSA 210

Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
           +   E  T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV 
Sbjct: 211 QPQAEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVN 269

Query: 238 LLRGIVSTL 246
           +LRGI   +
Sbjct: 270 ILRGIAKHI 278


>gi|126659046|ref|ZP_01730187.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
 gi|126619703|gb|EAZ90431.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
          Length = 248

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 119/249 (47%), Gaps = 4/249 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + +     I+LV+P    N+G VAR M N +L QL LV P      E+AR  + +   V+
Sbjct: 3   ETALTRVRIVLVEPAGPLNVGSVARVMKNMSLNQLFLVKPHCDRLGEEARLMAVHGIDVL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +V   + +A+   H I ATT R+ +    +  P+ A   L   +    N  +IFG E
Sbjct: 63  EKSQVVDTIPQALQGCHRIIATTGRSLSLPTHLETPRNALPWL---LTDDLNTALIFGPE 119

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL NEE++ +   +  P N  + SLN++QAV +  +E  + +    E        PA 
Sbjct: 120 DRGLNNEELSYAQRFVCIPANSDYSSLNLAQAVAVCSYELYQVAQNPLENTSNPSFDPAA 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L  +  +LE  L + GY  P   K ++ +    ++ +  L  EEV LLRGI+  +D 
Sbjct: 180 FEALEGYYQHLEAVLLKIGYLYPHTAKARL-EKFRRLYNKANLTTEEVALLRGILRQVDW 238

Query: 249 FSRQSSRRN 257
             +  S +N
Sbjct: 239 ACQDFSSKN 247


>gi|91775165|ref|YP_544921.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
           KT]
 gi|91709152|gb|ABE49080.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
           KT]
          Length = 251

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 3/238 (1%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N  +   I+L       NIG  ARAM    L+QL LV P+  +P  +A + ++ A  ++D
Sbjct: 6   NLLQQIRIVLCQTSHPGNIGAAARAMKTMGLSQLVLVKPK-SFPHAEATAMASGATDILD 64

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + +V + L EA+         +AR R     +++ +       E       V I+FG E 
Sbjct: 65  NTQVCATLAEALHGTTLAIGMSARRRELSHELVSARTGVQRAIE-AAHDAPVAIVFGTEM 123

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL+N E+     +   P NP + SLN++ AV ++ +E     +        E    AT 
Sbjct: 124 SGLSNAELDHCQLLAMIPANPEYSSLNLAAAVQVISYELRMAVLDHPGPTRTESAPLATS 183

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            E+     +LE  L E G+  P +  K+++  L  ++ R  L +EEV +LRGI+S   
Sbjct: 184 EEIERLYAHLEQVLIEIGFLNPAQ-PKRLMQRLRRMYGRARLEKEEVNILRGILSATQ 240


>gi|152978538|ref|YP_001344167.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
 gi|150840261|gb|ABR74232.1| RNA methyltransferase, TrmH family, group 1 [Actinobacillus
           succinogenes 130Z]
          Length = 249

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 12/244 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            K   I+LV+     NIG  ARAM    LT L LV P+      +A + SA A+ VI + 
Sbjct: 2   LKNIRIVLVETSHSGNIGSAARAMKTMGLTNLYLVAPKSRI-DAQAVALSAGAEDVIKNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  EA+AD   +  T+AR R+   S++ P+E      E       + I+FGRER G
Sbjct: 61  VLVPSFDEAVADCSLVIGTSARLRHLQSSLIEPRECGEKAIEAATKCGQIAIVFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-------KEQN 184
           LTN+E+      ++ P NP + SLN++ AV L+ +E     +              +  +
Sbjct: 121 LTNDELLKCRYHLNIPANPDYSSLNLAMAVQLVCYELRMAYLKVRTMPFSVIENMNQMPS 180

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             AT  EL  F ++LE    +  +     + + ++  L  ++ R ++ + E+ +LRG++S
Sbjct: 181 PLATARELEYFYEHLERLYTQLNFI----QNQSVMHKLRRLYQRADIEKNELNILRGMLS 236

Query: 245 TLDK 248
            ++K
Sbjct: 237 AVEK 240


>gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 711

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/244 (39%), Positives = 149/244 (61%), Gaps = 1/244 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
             PV+ILV PQ+ ENIG  ARAM N  L  LRLV PRDGWP E+A  S++ AD ++++  
Sbjct: 468 NSPVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAAT 527

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  ++ +AIADLH ++AT  R R+  K+VL  +  A  L +    G   G++FG ER GL
Sbjct: 528 VHDSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGL 587

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191
            NE++A ++A+I +P+NP F SLN++QAV++M +E       +  +  +  +   ATKGE
Sbjct: 588 DNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGE 647

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L +F+ +L   L+E G+ R  +K+  M+ +L   F R E+  +E+  L G+V+ L +  R
Sbjct: 648 LDNFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRR 707

Query: 252 QSSR 255
              +
Sbjct: 708 ARGQ 711


>gi|300311053|ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073838|gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 275

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 19/259 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             +LV+     NIG  ARA+     ++L LVNPR  D    ++A + ++ A  V+ + R+
Sbjct: 15  RFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVLQNARI 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +++EA+   +F  A +AR R     V++P+E A  L+    +G N  ++FG ER+GL 
Sbjct: 75  VGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRD--TGLNAALLFGNERFGLP 132

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP------- 186
           NE +   NA+++ P NP + SLN+SQAV ++ +EC    +      ++            
Sbjct: 133 NEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARSPGEVG 192

Query: 187 -----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
                A+  E+     +LE +L    +  P +  KK++  L  +F R +L  EEV +LRG
Sbjct: 193 FHGQSASVAEIEGMFAHLEQALVAIDFLNP-DNPKKLMPRLKRMFSRAQLETEEVNILRG 251

Query: 242 IVSTLD--KFSRQSSRRNN 258
           I   +   K ++   R  N
Sbjct: 252 IARQILEPKQAKAGRREQN 270


>gi|262165058|ref|ZP_06032795.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
 gi|262024774|gb|EEY43442.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
          Length = 244

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + ++F  
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIFPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P++    L         V ++FGRER GLTN+E
Sbjct: 67  LEAAVADCRLVVGTSARSRTLDWPMLEPRQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S+   +++       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINMLRGILTSMQK 238


>gi|254486709|ref|ZP_05099914.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
 gi|214043578|gb|EEB84216.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
          Length = 257

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 97/245 (39%), Positives = 142/245 (57%), Gaps = 1/245 (0%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            + K P  +LV PQ+GENIG  ARAMWNF L ++R+V+PRDGWP+  A + ++ A  ++D
Sbjct: 13  ENPKIPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPSAVAMASGAGRLLD 72

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V  +L  A+ D  F++ATTAR R+  K V +P+ A     E I  GQ V ++FG ER
Sbjct: 73  EAVVHDDLAGALGDAAFVFATTARERDLTKQVYSPEAAMAKAAELIAQGQRVAVMFGPER 132

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PAT 188
            GL N++IA +NAI+S PVNP F SLN++Q VLLM +E M        + V+   T  A 
Sbjct: 133 AGLENDDIARANAIVSVPVNPEFASLNLAQCVLLMGYEWMRAQGAVVPEQVEMAGTNWAD 192

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+     + E  LE  G+F P  K   M  +L +++ R  L R +V +L G +  + +
Sbjct: 193 NSEVEHLARHFEERLEVAGFFYPEHKATSMKVNLRNMWSRLPLTRADVQMLHGTLRQMVR 252

Query: 249 FSRQS 253
           +  + 
Sbjct: 253 WKERG 257


>gi|71907312|ref|YP_284899.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
 gi|71846933|gb|AAZ46429.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
          Length = 254

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 7/238 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++L  P    NIG  ARAM    L+ L LV P+  +P  +A + +  A  V+    V 
Sbjct: 10  IRVVLCRPSHPGNIGAAARAMKTMGLSSLYLVTPKQ-FPDPEADTRATGAVDVLARATVT 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +LKEA+A   F  A +AR R+    + AP+E    L     +G +V ++FG E  GLTN
Sbjct: 69  GSLKEALAGTAFAVALSARQRDIGPVLGAPRETVARLITEAAAGSDVALVFGNETVGLTN 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-----ATK 189
           EEI    A ++ P NP F SLN+  AV ++ +EC   + +     V+   TP     AT 
Sbjct: 129 EEILHCQAAVTIPTNPDFSSLNLGSAVQVLCYECRMAAFLEKPPVVEPGVTPFASPVATH 188

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            E+     +LE  + + G++ P E+  ++   L  +F R  L ++E+ +LRGI+++  
Sbjct: 189 DEIEGLYGHLETIMTDSGFYNP-EQPGRLFPKLRRLFGRVRLEKDEINILRGILASTQ 245


>gi|306840340|ref|ZP_07473111.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
 gi|306289687|gb|EFM60879.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
          Length = 253

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 115/245 (46%), Positives = 167/245 (68%), Gaps = 2/245 (0%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           + ENIGMVARAM NF L +LRLVNPR+ +PSEKAR++++ AD VID+  V+ +L  AIAD
Sbjct: 1   MPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYGDLPSAIAD 60

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L+F+YATTAR R+ FK V +  EA   L  R  +G+  GI+FGRER+GL+NEE+ L++ +
Sbjct: 61  LNFVYATTARERDGFKPVRSAIEAGNALRRRFKTGEKTGILFGRERFGLSNEEVGLADEL 120

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGELLSFLDYLEI 201
           ++FPVNP F SLNI+QAVLLM +E M++ + +    V    +   A K EL  F ++LE 
Sbjct: 121 VTFPVNPAFASLNIAQAVLLMSYEWMKSGLENQTDTVFRGPEMPLAPKEELHGFFNHLEE 180

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVLL 261
           +L+ RGYFRP  +K+ M+++L ++  R      E+ LLRG+V++LD F+ +  R +    
Sbjct: 181 ALDVRGYFRPEARKEIMVNNLRAVLTRAGFASAELKLLRGVVTSLDVFTPKKPRGSGAPE 240

Query: 262 QKTEK 266
            +  K
Sbjct: 241 GRARK 245


>gi|148256718|ref|YP_001241303.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146408891|gb|ABQ37397.1| Putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 399

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 118/250 (47%), Positives = 169/250 (67%), Gaps = 2/250 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             GPV+ILV+PQLGENIGM ARAM NF LT+LRLVNPRDGWP+  A+ ++A AD +ID V
Sbjct: 13  IAGPVVILVEPQLGENIGMAARAMGNFALTELRLVNPRDGWPNIAAQRAAAGADHIIDHV 72

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R+F+ L EAIADL  ++ATTAR+ +  K V+ P+ AA  +  +I +G   GI+FGRER G
Sbjct: 73  RLFATLPEAIADLDLVFATTARSHDQAKPVMGPEAAAREMQGQIAAGGRAGILFGRERSG 132

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKG 190
           LTNEE+A +N II++PVNP F SLN++QAVLLM +E  +     +    + E++  AT+ 
Sbjct: 133 LTNEEVARANRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTFGALPFTMPERSERATQE 192

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L +F + L   L+   + RP EK++ ML +L +IF R E  ++++  L G+V  + +  
Sbjct: 193 QLEAFFENLVRELDRVEFLRPAEKRETMLVNLRNIFFRMEPTKQDIHTLHGVVMAIAE-G 251

Query: 251 RQSSRRNNVL 260
           R+   +  VL
Sbjct: 252 RKGPAKGGVL 261


>gi|83942524|ref|ZP_00954985.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
           sp. EE-36]
 gi|83953745|ref|ZP_00962466.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
           NAS-14.1]
 gi|83841690|gb|EAP80859.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
           NAS-14.1]
 gi|83846617|gb|EAP84493.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
           sp. EE-36]
          Length = 250

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 1/240 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P  +LV PQ+GENIG  ARAMWNF L ++R+V PRDGWP+  A + ++ A  ++D   ++
Sbjct: 11  PAFVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPSAVAMASGAGRLLDEAVIY 70

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+ D  F++ATTAR+R+  K V +P+ A     + I  G+ V ++FG ER GL N
Sbjct: 71  DDLAGAVGDAAFVFATTARDRDLTKPVYSPEAAMAKAAQMIREGRRVSVLFGPERAGLEN 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKGELL 193
           ++I+ +NAI+S PVNP F SLN++Q VLLM +E M        + V+   T  A   E+ 
Sbjct: 131 DDISRANAIVSVPVNPAFASLNLAQCVLLMGYEWMRAQGDVVAEQVEMAGTDWADNSEIE 190

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
               + E  L+  G+F P  K   M  +L +++ R  L R +V  L G +  + ++  + 
Sbjct: 191 HLARHFEDRLDTAGFFYPEHKAASMKINLRNMWSRLPLTRADVQTLHGTLRQMVRWKERG 250


>gi|165976260|ref|YP_001651853.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307250079|ref|ZP_07532042.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|165876361|gb|ABY69409.1| probable tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306857876|gb|EFM89969.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 242

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D
Sbjct: 2   NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E     +        + + E+  
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235

Query: 246 LDK 248
           ++K
Sbjct: 236 VEK 238


>gi|238027926|ref|YP_002912157.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877120|gb|ACR29453.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia glumae
           BGR1]
          Length = 284

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 14/266 (5%)

Query: 2   TPYAPQLQNSAKGPV--------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-- 51
            P AP   +S   P          +LV+P    N+G  ARA+     ++L LV PR    
Sbjct: 21  PPSAPAGPSSVPPPAAGGFASARFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVAGV 80

Query: 52  WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
               +A + ++ AD V+ + R+   L +A+A + +  A TAR+R      LAP+ AA   
Sbjct: 81  LADPEAVAMASGADDVLAATRIVPTLADALAGVQWSVALTARSREYGPPRLAPRAAAETA 140

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++ SG+ +  +FG ER GL+NE +   +AI   P NP + SLN+SQA+ ++ +E    
Sbjct: 141 RAQLASGE-IAFVFGNERVGLSNEHVERCSAIAHIPANPEYSSLNLSQAIQVLAYELRVA 199

Query: 172 SIVSSE--KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
            +  S   ++     T A   E+     +LE +L    +  P    KK++  L  +F R 
Sbjct: 200 LLSGSPGGRHDGAAGTLARADEIEGMFAHLEAALVALDFLDP-RNPKKLMPRLRRMFSRA 258

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSR 255
            L REEV +LRGI   +   +    R
Sbjct: 259 GLEREEVNILRGIAKHIVLKTGGGER 284


>gi|261212154|ref|ZP_05926440.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
 gi|260838762|gb|EEX65413.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
          Length = 243

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 120/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + ++   
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIVPT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P++    L         V ++FGRER GLTN+E
Sbjct: 66  LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +   +   +EQ         EL  
Sbjct: 125 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAFLAMDQNQRQEQRDQEYPRHQELEL 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 185 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 237


>gi|46143391|ref|ZP_00135323.2| COG0565: rRNA methylase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126208319|ref|YP_001053544.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae L20]
 gi|126097111|gb|ABN73939.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 243

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D
Sbjct: 2   NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E     +        + + E+  
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F ++ E   ++ G+         ++  L  ++ R EL   E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIHN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235

Query: 246 LDK 248
           ++K
Sbjct: 236 VEK 238


>gi|303252841|ref|ZP_07339000.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247831|ref|ZP_07529867.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648271|gb|EFL78468.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855633|gb|EFM87800.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 243

 Score =  291 bits (746), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D
Sbjct: 2   NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E     +        + + E+  
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235

Query: 246 LDK 248
           ++K
Sbjct: 236 VEK 238


>gi|322514554|ref|ZP_08067587.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Actinobacillus ureae ATCC 25976]
 gi|322119493|gb|EFX91580.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Actinobacillus ureae ATCC 25976]
          Length = 243

 Score =  291 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 132/243 (54%), Gaps = 10/243 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           NS     IIL++  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D
Sbjct: 2   NSLDQIQIILIETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEQG-KVAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E     +        + + E+  
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLELQKNPQIRPLVEEKD 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235

Query: 246 LDK 248
           ++K
Sbjct: 236 VEK 238


>gi|154706594|ref|YP_001424590.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
 gi|154355880|gb|ABS77342.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
          Length = 240

 Score =  291 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 7/238 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   I+LV+P    NIG  ARAM     ++L LV P + +P E+A + +A AD V+ S R
Sbjct: 3   QNVRIVLVNPSHPGNIGAAARAMKTMGFSRLYLVKP-ELFPHEQATARAAGADAVLASAR 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +L  A+   + ++ T+AR+R     +   +E A    + +    N+ I+FGRER GL
Sbjct: 62  VVDDLTAALEGCNLVFGTSARSRTLPWLLKTARECAE---QSVQHQGNIAIVFGRERSGL 118

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKG 190
           TNEE+A     ++ P    F SLN++QAV ++ +E     +  V            AT  
Sbjct: 119 TNEELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMRMAKLNAVDPRHQNTPIQQLATAD 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           ++  F  +LE +L +  +  P +  K ++  L  +F R ++   E+ +LRGI++++ +
Sbjct: 179 QMEGFYVHLEKTLVDIKFIDPKQ-PKMLMKRLRRLFNRAQIDETELNILRGILASIHR 235


>gi|304311799|ref|YP_003811397.1| RNA methyltransferase [gamma proteobacterium HdN1]
 gi|301797532|emb|CBL45752.1| RNA methyltransferase [gamma proteobacterium HdN1]
          Length = 254

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 13/253 (5%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      I++V      N+G  ARAM    +  LRLV P D   + KA + ++ A  ++ 
Sbjct: 2   NDLDRISIVMVHTTDSGNLGSAARAMKTMGIHDLRLVAPEDSPDTAKAIARASGAADLLL 61

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + R F  L+EA+AD   ++  +AR R     ++ P   A ++ +    G  V ++FGRE 
Sbjct: 62  AARQFDTLEEALADCSLVFGASARKRTIPWPLITPPVMADLVLKEPVEG-RVAVLFGRED 120

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN----- 184
            GLTNEE++L +  ++ P +  +  LN+SQA+ ++ ++  ++ +   +      +     
Sbjct: 121 NGLTNEELSLCHYHVTIPCSDEYCVLNVSQAIQVICYQLRQSLVERPKGEEAALDTGSFG 180

Query: 185 ------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                  PAT  E+  F  +LE +L    +    E   +++  +  +F R      EV +
Sbjct: 181 LREWDAPPATGEEMERFFRHLEETLVALEFL-KHENPGQLMTRMRRMFGRIRPDHMEVNV 239

Query: 239 LRGIVSTLDKFSR 251
           LRG+++ + K  R
Sbjct: 240 LRGVLTAMQKKLR 252


>gi|258627176|ref|ZP_05721964.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
 gi|258580478|gb|EEW05439.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
          Length = 244

 Score =  291 bits (745), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + ++F  
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIFPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P +    L         V ++FGRER GLTN+E
Sbjct: 67  LEAAVADCGLVVGTSARSRTLDWPMLEPPQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S+   +++       EL  
Sbjct: 126 LQLCHYHVYVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELEL 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F ++LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYEHLEKVITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|325579031|ref|ZP_08148987.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159266|gb|EGC71400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 239

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 12/240 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     NIG  ARAM    L+ L LV+P+     E++ + +A AD V+ + 
Sbjct: 2   LQNIRIVLVETSHSGNIGSAARAMKTMGLSNLYLVSPKSV--DEQSIALAAGADDVMRNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +    ++AI D   +  T+AR R+   +++ P++ A   +        V I+FGRER G
Sbjct: 60  HIVDTFEQAIEDCSLVIGTSARLRHLQSTLIDPRKCAEKASAHQGQ---VAIVFGRERVG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPAT 188
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +   +        ++   T
Sbjct: 117 LTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMRMAFLAKDKTENALSMIEDIYPT 176

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+  F  + E      G+     + + ++  L  ++ R  L + E+ +LRG++S ++K
Sbjct: 177 AQEMEYFFAHTEQVYLSLGFI----QNQGVMQKLRRLYNRSSLEKNELNILRGMLSAVEK 232


>gi|158423491|ref|YP_001524783.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158330380|dbj|BAF87865.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 289

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 103/253 (40%), Positives = 159/253 (62%), Gaps = 1/253 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A GPV+ILV+PQLGEN+G  ARAM NF L++LR+VNPR+GWP+EKAR   A AD ++D  
Sbjct: 14  AGGPVVILVEPQLGENVGSAARAMGNFGLSRLRVVNPREGWPNEKARIFCAGADRILDDA 73

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++F +L+ A+AD+ +  ATTAR R   K V      A     R+ +G++V ++FGRER G
Sbjct: 74  QLFPDLRSALADVSYAVATTARERGMAKPVNGADVVAQDAVVRLKAGEDVALVFGRERTG 133

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATKG 190
           L  EE++L ++I++ PVNP F SLN++ AV +  +E  + +  ++   V  E++ PA + 
Sbjct: 134 LYTEEVSLCDSILTLPVNPAFASLNLATAVAVTAYEWSKAATGNALPFVMPERSPPADRV 193

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L +F D+LE  LEE  +FR  EK      ++ +IF R EL ++++  L G+++ L +  
Sbjct: 194 DLFAFFDHLERELEEAAFFRSPEKAPSTTRNIRNIFHRCELTKQDLATLHGMITALVEGR 253

Query: 251 RQSSRRNNVLLQK 263
               +R      K
Sbjct: 254 EGREQRKAERNAK 266


>gi|115523621|ref|YP_780532.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115517568|gb|ABJ05552.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris BisA53]
          Length = 397

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 110/251 (43%), Positives = 169/251 (67%), Gaps = 2/251 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
              GPV+ILV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A+ S+A AD ++D+
Sbjct: 14  DLNGPVVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNLHAQRSAAGADYILDA 73

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +F ++++A+ D   ++A+TAR  +  K V+AP+ AA  +   I  G NVGI+FGRER+
Sbjct: 74  AVLFDSVEDAVKDCSLLFASTARAHDQAKPVVAPEAAAAEMTAEIAGGGNVGILFGRERY 133

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
           GL N+E+AL+N II+FPVNP F SLN++QAVLL+ +E  +++  ++    + E++  A++
Sbjct: 134 GLENQEVALANRIITFPVNPAFASLNLAQAVLLVGYEWFKHATQNALPFAMPERSERASQ 193

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G V  + + 
Sbjct: 194 HQMQAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFSRMEPTKQDMHTLHGAVMAIAE- 252

Query: 250 SRQSSRRNNVL 260
            R+   +  VL
Sbjct: 253 GRKGPAKGGVL 263


>gi|307543985|ref|YP_003896464.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
           2581]
 gi|307216009|emb|CBV41279.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
           2581]
          Length = 247

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 3/244 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L+      NIG  ARAM N  L  L LV PR    +    S ++ AD ++ + 
Sbjct: 2   LERIRIVLIGTSHPGNIGGTARAMHNMGLEDLALVAPRCEPITADTVSRASGADALVHNA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERW 130
           R   NL++A+ D   +   +AR+RN    ++ P+E    L  E       V ++FGRE  
Sbjct: 62  RTVDNLEDAVGDCTLVVGASARSRNLPWPMVTPRELGERLPTELASPQGRVALVFGREDS 121

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATK 189
           GLTN E+   +A +  P NP F SLN++ AV ++ +EC       S +  +    P A+ 
Sbjct: 122 GLTNTEMQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECRLACQAESPEMQEPDAAPLASH 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL  +  +LE +L + G+  P +  ++++  L    +R    R E+ +LRGI+S   + 
Sbjct: 182 EELEHYFAHLERTLIDIGFHDP-DMPRQLMARLRRFTLRAHPERMELNILRGILSATQRQ 240

Query: 250 SRQS 253
               
Sbjct: 241 VEHR 244


>gi|15602181|ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720552|gb|AAK02400.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 238

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 9/243 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     NIG  ARAM    L QL LV P+     E A + SA A+ V+   
Sbjct: 2   LENIRIVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQ-PLDEHAIALSAGAEDVLKQA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ ++  EA+AD   +  T+AR R+   S++ P+E              V I+FGRER G
Sbjct: 61  KIVASFDEAVADCALVIGTSARLRHLQNSLIEPRECGTRAIAYAKQ-APVAIVFGRERIG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS---SEKNVKEQNTPAT 188
           LTNEE+      ++ P NP + SLN++ AV L+ +E     +     +E      NT  T
Sbjct: 120 LTNEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELRLAFLSQQAMTESLSTIDNTYPT 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+  F  + E      G+     + + ++  L  ++ R +L + E+ +LRG+++ ++K
Sbjct: 180 HTEIEHFFQHTERLYTALGFI----QNQGVMPKLRRLYQRVQLEKNELNILRGMLTAVEK 235

Query: 249 FSR 251
             +
Sbjct: 236 RLK 238


>gi|326795561|ref|YP_004313381.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
 gi|326546325|gb|ADZ91545.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
          Length = 252

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 4/252 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L++     N+G +ARAM N  L+ L LV+P D +PS++A S +A A  ++++ 
Sbjct: 2   LSNIRIVLINTFHPGNVGAIARAMKNMGLSNLYLVDPND-YPSDEATSRAAGAVDLLENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + S L+EAI+D   +  T+AR+R     ++  +E A  +        +V I+FGRE  G
Sbjct: 61  TIVSTLEEAISDCSLVIGTSARHRTFQLPIMNARECAETVIPEAKQ-HDVAIVFGRETTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NEEIA  +  +    N  +P LNISQAV ++ +E    +      + KE      K E
Sbjct: 120 LLNEEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMAN-QDQSIHAKETAEYPRKKE 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +  F ++LE +L    +        K+L+ L   F R    ++E+ +LRG+++ + + + 
Sbjct: 179 MDLFHEHLEETLYGLNFIIKNH-PGKVLEKLQRFFNRSRPEKQELGILRGVLAAVQREAN 237

Query: 252 QSSRRNNVLLQK 263
            +    N   + 
Sbjct: 238 LTPSTKNSDAKD 249


>gi|254453515|ref|ZP_05066952.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
 gi|198267921|gb|EDY92191.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
          Length = 245

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 143/242 (59%), Gaps = 1/242 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +   A  P I+L+ PQ+GEN+G  ARAMWNF L ++R+V PRDGWP+  A + ++ A  +
Sbjct: 1   MPTDAPQPTIVLIRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRI 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   V +++ + IAD  ++YATTAR R   K V +P+ A      RI  G+ V ++FG 
Sbjct: 61  LDEAEVSTDVADGIADRTYVYATTARPRELTKPVFSPEAAMKDAAARIARGEKVAVMFGP 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTP 186
           ER G+ N +IA +NAII+ PVNP FPSLN++Q VLL+ +E       V       +   P
Sbjct: 121 ERSGMENADIAHANAIITVPVNPEFPSLNLAQCVLLVGYEWRRAVGEVVDVVVQGQTVEP 180

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + ++ +   + E  L++ G+F P  K   M  +L +++ R  + R +V +L G++  L
Sbjct: 181 ADQRDIEALARHYEDRLDDAGFFYPDHKADSMKVNLRNLWSRMPMTRADVQMLHGMLRQL 240

Query: 247 DK 248
            +
Sbjct: 241 LR 242


>gi|302384235|ref|YP_003820058.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194863|gb|ADL02435.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 267

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 139/242 (57%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
               PV+IL   Q+ ENIG VAR M NF L +LRLV+PRDGWP ++A   ++ AD V+D 
Sbjct: 3   DLTPPVVILDRSQMAENIGAVARVMANFGLDRLRLVSPRDGWPQDRAWPLASGADWVLDG 62

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+VF ++  A ADL  ++ATTAR R   + V  P++A+ VL +   SG  VG++FG ER 
Sbjct: 63  VQVFDSVAAATADLTTVFATTARPRETRQPVRTPRDASRVLYDDAASGLGVGLLFGSERA 122

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL   +IAL   I++ P++P   SLN++QAV +  +E     + +   N +E   PA+  
Sbjct: 123 GLETSDIALCQGIVTIPIDPRHQSLNLAQAVAINAYEWRTLVLDAPPPNFREGEPPASGA 182

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
             +   ++LE  L+  G+F P EK + M  +L  +  R     +EV   RG++  L K  
Sbjct: 183 LAVGMYEHLERELDAAGFFHPPEKFRSMSQNLRVMLGRAAFTEQEVATFRGVIHALSKGR 242

Query: 251 RQ 252
            +
Sbjct: 243 GR 244


>gi|323526554|ref|YP_004228707.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383556|gb|ADX55647.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1001]
          Length = 277

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 20/273 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60
           P    L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 10  PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 69

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ S  +   L +A++ +H+  A TAR R        P+ AA +  +    G+ 
Sbjct: 70  ASGADDVLASAHIVPTLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE- 128

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---- 176
           + ++FG ER GL+NE++   +A+   P NP + SLN++QAV ++ +E     + S     
Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAKAN 188

Query: 177 ---------EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
                        +     A   E+ S   +LE +L    +  P    KK++  L  +F 
Sbjct: 189 APANPAPQAAAPAEPSGPRAASDEIESMFSHLERALVALEFLDPA-NPKKLMSRLRRLFA 247

Query: 228 RPELMREEVFLLRGIVSTLDKFSRQSSRRNNVL 260
           R  L REEV ++RGI   +     ++ R+++  
Sbjct: 248 RSGLEREEVNIVRGIAKHI---LLKTGRKDDGA 277


>gi|170699309|ref|ZP_02890358.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           IOP40-10]
 gi|170135801|gb|EDT04080.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           IOP40-10]
          Length = 273

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 16/260 (6%)

Query: 1   MTPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           + P AP    +A  P           +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 5   LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64

Query: 52  W--PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
                 +A + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA 
Sbjct: 65  HVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QAV ++ +E  
Sbjct: 125 QACTQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELR 183

Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
              +       +   E  T A   E+     +LE +L    +  P    KK++  L  +F
Sbjct: 184 VAFLEQGSELREAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242

Query: 227 IRPELMREEVFLLRGIVSTL 246
            R  L REEV +LRGI   +
Sbjct: 243 ARTGLEREEVNILRGIAKHI 262


>gi|222056219|ref|YP_002538581.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
 gi|221565508|gb|ACM21480.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
          Length = 251

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 125/250 (50%), Gaps = 6/250 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            ++    I+LV  Q   NIGMV RAM N  L  LRLVNP       +A   + +A  V+D
Sbjct: 8   QTSTAISIVLVGTQSPGNIGMVCRAMKNMGLYDLRLVNP-CQVDHPEAHKFAVSARDVLD 66

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R+F++L++A+ D     ATT R+    + +  P+E A  +  +      V ++FGRE 
Sbjct: 67  GARLFTSLEDALRDCEISVATTRRHGKYRQEISTPQEIAERVRSQAA-MHRVALVFGRED 125

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLT EE+AL     + P    + SLN++QAVL+  +E  +   VS  ++ +     A  
Sbjct: 126 SGLTTEEVALCRWQSTIPTADEYGSLNLAQAVLIFCYELHKRQEVSPAQDTR---LLADS 182

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             + +    +E +L + G+  P E    ++  L  I+ R EL   EV +LRG++S +D  
Sbjct: 183 AAMEAMYRQMEKTLLKIGFLNP-ENPAHIMRTLRRIYSRAELDEREVAVLRGMMSQIDWG 241

Query: 250 SRQSSRRNNV 259
           +     R  +
Sbjct: 242 TGGFKGRKGI 251


>gi|78066859|ref|YP_369628.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
 gi|77967604|gb|ABB08984.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
          Length = 289

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 126/253 (49%), Gaps = 11/253 (4%)

Query: 3   PYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57
           P A   Q  + G      +LV+P    N+G  ARA+     ++L LV PR        +A
Sbjct: 28  PGAASSQPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEA 87

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA     ++ +
Sbjct: 88  IAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAATQACAQVGT 147

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSI 173
           G ++ ++FG ER GL NE +   +A+   P NP + SLN++QAV ++ +E      E++ 
Sbjct: 148 G-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEHAS 206

Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
             S +   E  T A   E+     +LE +L    +  P    KK++  L  +F R  L R
Sbjct: 207 EPSAQPSGEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLER 265

Query: 234 EEVFLLRGIVSTL 246
           EEV +LRG+   +
Sbjct: 266 EEVNILRGVAKHI 278


>gi|301155740|emb|CBW15208.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 239

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   IILV+     NIG  ARAM    L+ L LV+P+     E++ + +A AD ++ + 
Sbjct: 2   LQNIRIILVETSHSGNIGSAARAMKTMGLSNLYLVSPKSV--DEQSIALAAGADDLVRNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  + ++AI D   +  T+AR R+   +++ P+E A            V I+FGRER G
Sbjct: 60  QIVDSFEQAIEDCSLVIGTSARLRHLQSTLIEPRECAEKACAYQGQ---VAIVFGRERVG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPAT 188
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +            +N   T
Sbjct: 117 LTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEMRMAFLAKERTESTLSTIENIYPT 176

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E+  F  + E   +  G+     + + ++  L  ++ R  L + E+ +LRG++S ++K
Sbjct: 177 AQEMEYFFAHTEQVYQSLGFI----QNQGVIQKLRRLYNRSSLEKNELNILRGMLSAVEK 232


>gi|260574015|ref|ZP_05842020.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
 gi|259023481|gb|EEW26772.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
          Length = 270

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 97/252 (38%), Positives = 144/252 (57%), Gaps = 1/252 (0%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           Y   +Q+    P  ILV PQ+GENIG  ARAM NF L +LR+V PRDGWP+ KA + ++ 
Sbjct: 18  YLAAMQDPQASPAFILVRPQMGENIGAAARAMLNFGLERLRVVGPRDGWPNPKAVAMASG 77

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D    + +++ AIAD  +++ATTARNR   K V+ P+ A       I +G+ VG+
Sbjct: 78  AGRLLDFAGPYPDVQAAIADCDYVFATTARNRELTKPVMTPERAMEHARALIAAGKRVGV 137

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FG ER GL N ++ L+NAI+S PVNP FPSLN+ Q VLL+ +E    +     + +   
Sbjct: 138 LFGPERAGLENSDLVLANAIVSVPVNPDFPSLNLGQCVLLLGYEWRRQTACVPPEVMAMA 197

Query: 184 NTP-ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            T  A+  E+    D+ E  LE  G+F P  K   M   L +++ R  L R +V  L G+
Sbjct: 198 GTDFASGIEVEKLGDHFEDRLEAAGFFFPATKAAGMKLVLRNMWSRLHLTRADVQSLHGM 257

Query: 243 VSTLDKFSRQSS 254
           +  + +   +  
Sbjct: 258 LRQIARHLPKDG 269


>gi|325526741|gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 290

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 11/255 (4%)

Query: 1   MTPYAPQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEK 56
           ++  AP    S        +LV+P    N+G  ARA+     ++L LV PR        +
Sbjct: 27  VSDAAPSRSPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPE 86

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           A + ++ AD V+ S  V   L EA++ +H+  A TAR R      LAP+ AA     ++ 
Sbjct: 87  AIAMASGADDVLASAHVVPTLGEALSGVHWSIALTARAREYGPPRLAPRAAAGQACAQVG 146

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM-----EN 171
           +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QAV ++ +E       + 
Sbjct: 147 TG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQQ 205

Query: 172 SIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
           +  + +    E  T A   E+     +LE +L    +  P    KK++  L  +F R  L
Sbjct: 206 ASDAQQPPAGEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGL 264

Query: 232 MREEVFLLRGIVSTL 246
            REEV +LRGI   +
Sbjct: 265 EREEVNILRGIAKHV 279


>gi|144900197|emb|CAM77061.1| rRNA methylase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 244

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 145/240 (60%), Gaps = 2/240 (0%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            PQL ENIG  ARAM N  LT LRLV PR  W S++A ++++ AD V+   ++F    EA
Sbjct: 2   RPQLSENIGTAARAMLNNGLTDLRLVAPRPDWLSDRAIAAASGADRVVLGAKIFDTTAEA 61

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +ADL+ ++ATTARNR   K V  PK AA+ +      GQ  G++FG ER GL N+++AL+
Sbjct: 62  VADLNRVWATTARNRFMVKPVDTPKSAALAMRALDADGQKFGVMFGPERTGLENDDVALA 121

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLSFLDY 198
           + +++ P+NP + SLN++Q VLL+ +E  + +   +      K    PATK +L  F D+
Sbjct: 122 DTVVTVPLNPDYSSLNLAQCVLLVAYEWYQAAAPTLPERHMTKGAEPPATKEKLQHFFDH 181

Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
           LE  L+E G+ R  +K+  M+ ++ ++F R  L  +EV  L GIV  L  +  +  + +N
Sbjct: 182 LERELDECGFLRIADKRPVMVRNIRNLFQRAHLTGQEVQTLHGIVHELVTYRHRKGKSHN 241


>gi|294012167|ref|YP_003545627.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292675497|dbj|BAI97015.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 350

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 4/239 (1%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  +A  PVI+LV PQLGENIG  ARAM NF L ++RLV+PRDGWP+  A  S+A AD V
Sbjct: 110 MIETAPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVV 169

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D   VF  L +A+AD   +YATT R R   K V+ P+EAA  ++           +FG 
Sbjct: 170 LDKAEVFGTLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHAAT---GRSAYVFGP 226

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           ER GL  E++AL+  I++ P+NP F SLN++QAV+L  +E  + + +  +  V +   PA
Sbjct: 227 ERSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASLE-QPTVVDLGEPA 285

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            + EL   +   E  LE  GYF P ++       L ++  +P     EV  LRG++S L
Sbjct: 286 PQAELEGMIGQFETLLESAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 344


>gi|251792921|ref|YP_003007647.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534314|gb|ACS97560.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 244

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 9/240 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            K   I+L++     NIG  ARAM    LT L LV P+ G   ++A + +A A+ ++ S 
Sbjct: 2   LKNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQGV-DDQAIALAAGAEDLVKSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  N  +A+AD   +  T+AR R+   S++ P+E          +G  V I+FGRER G
Sbjct: 61  VVVENFLQAVADCSLVIGTSARLRHLQNSLIEPRECGTKTVAHAMNG-KVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK---NVKEQNTPAT 188
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     + ++ +        +   +
Sbjct: 120 LTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLAATAEVTSTPANVDIYPS 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             EL  F  + E   +  G+     + + ++  L  ++ R EL + E+ +L G++S ++K
Sbjct: 180 MQELEYFYHHTEQLYQSLGFI----QNQGVMQKLRRLYGRAELEKTELNILLGMLSAVEK 235


>gi|153800584|ref|ZP_01955170.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229523431|ref|ZP_04412838.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
 gi|124123873|gb|EAY42616.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229339794|gb|EEO04809.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
          Length = 244

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTN+E
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +   +  ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|307254675|ref|ZP_07536503.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259119|ref|ZP_07540849.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306862348|gb|EFM94314.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866786|gb|EFM98644.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 243

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      IILV+  L  NIG  ARAM    L+ LRLV+P +    E++++ +A A  V+D
Sbjct: 2   NILGRIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQSQALAAGAKDVLD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E     +        + + E+  
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235

Query: 246 LDK 248
           ++K
Sbjct: 236 VEK 238


>gi|62258308|gb|AAX77781.1| unknown protein [synthetic construct]
          Length = 282

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 135/246 (54%), Gaps = 7/246 (2%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++ N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  
Sbjct: 26  EMNNLFNNIHIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATE 84

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIF 125
           V+++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+F
Sbjct: 85  VVNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILF 144

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQN 184
           GRER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + +I  S  K V E N
Sbjct: 145 GRERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYN 204

Query: 185 TP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
                A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG
Sbjct: 205 HLHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRG 263

Query: 242 IVSTLD 247
            +++L+
Sbjct: 264 FLTSLE 269


>gi|91784181|ref|YP_559387.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
 gi|91688135|gb|ABE31335.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
          Length = 278

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 19/272 (6%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60
           P   +L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 10  PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQTDPEAIAM 69

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+    V   L +A++ +H+  A TAR R        P+ AA +  ++   G+ 
Sbjct: 70  ASGADDVLACAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIARDQAVHGE- 128

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178
           + ++FG ER GL+NE++   +A+   P NP + SLN++QAV ++ +E     + +     
Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATA 188

Query: 179 -----------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
                        +     A   E+ S   +LE +L    +  P    KK++  L  +F 
Sbjct: 189 TAHAAPRAAAGPGEPAGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 247

Query: 228 RPELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259
           R  L REEV ++RGI   +    +   R  + 
Sbjct: 248 RSGLEREEVNIVRGIAKHI--LLKTGPRGGDA 277


>gi|330993326|ref|ZP_08317261.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329759356|gb|EGG75865.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 266

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 155/246 (63%), Gaps = 3/246 (1%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
             PV+ILV PQ+ ENIG  ARAM N  L  +R+V PRDGWP E+A  S++ AD +++S +
Sbjct: 15  NSPVVILVRPQMAENIGTTARAMANGGLFHMRIVAPRDGWPQERAWRSASGADRILESAQ 74

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF  + +A+ADLH ++AT  R R+  K VL  +  A  L E    G  VG++FG ER GL
Sbjct: 75  VFDTVDDAVADLHHVFATCPRPRHIVKPVLTARGGAAELREMTGRGLKVGLMFGPERAGL 134

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191
            NE++A ++A+I +P+NP F SLN++QAV++M +E       +  +  +  +   AT+GE
Sbjct: 135 DNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTEDETPPRALMTNETHVATRGE 194

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD--KF 249
           L +F+ +L   L++ G+ R  +K+  M+ +L   F+R E+  +E+  L G+V+ L   + 
Sbjct: 195 LENFMHHLITDLDDCGFLRNEQKRAGMVRNLRHFFLRGEVTEQELRTLHGVVTELSRGRK 254

Query: 250 SRQSSR 255
           +RQ++R
Sbjct: 255 ARQAAR 260


>gi|172061034|ref|YP_001808686.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|171993551|gb|ACB64470.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MC40-6]
          Length = 273

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 16/260 (6%)

Query: 1   MTPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           + P AP    +A  P           +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 5   LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64

Query: 52  W--PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
                 +A + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA 
Sbjct: 65  HVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QA+ ++ +E  
Sbjct: 125 QACMQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183

Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
              +           E  T A   E+     +LE +L    +  P    KK++  L  +F
Sbjct: 184 VAFLEQGSGLHHAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242

Query: 227 IRPELMREEVFLLRGIVSTL 246
            R  L REEV +LRGI   +
Sbjct: 243 ARTGLEREEVNILRGIAKHI 262


>gi|74317179|ref|YP_314919.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
 gi|74056674|gb|AAZ97114.1| RNA methyltransferase TrmH, group 1 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 256

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 7/259 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MT   P+L    +   ++L       NIG  ARAM    L+QL LV+P   +P+ +A + 
Sbjct: 1   MTSSDPKLLADIR---VVLARTSHPGNIGAAARAMKTMGLSQLVLVDP-AVFPNSQADAM 56

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  V+   RV   L EA+AD       +AR R+    VL P EAA+ L         
Sbjct: 57  ASGAVDVLAGARVCPTLTEALADTTLALGVSARRRDIVAEVLNPAEAALRLLGEAQR-AP 115

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++FG E  GL+NEE++L   +++ P NP + SLN++ AV ++ +E  +  +       
Sbjct: 116 VALVFGNETSGLSNEELSLCQGLVTIPANPDYSSLNLAAAVQVLSYEIRQAWLDRPSWPA 175

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
            E +  A+  E+  F  +LE +L +  +  P     K++  L  +F R  L +EEV +LR
Sbjct: 176 PEIDA-ASGDEVEKFYGHLEAALADLEFLNPGS-PGKLMLKLRRLFARTRLAKEEVNILR 233

Query: 241 GIVSTLDKFSRQSSRRNNV 259
           GI+S      R + R   V
Sbjct: 234 GILSAAQDAKRAARRSGTV 252


>gi|190150169|ref|YP_001968694.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263508|ref|ZP_07545123.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915300|gb|ACE61552.1| hypothetical tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871151|gb|EFN02880.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 243

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+ 
Sbjct: 2   NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLA 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E     +        + + E+  
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F ++ E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235

Query: 246 LDK 248
           ++K
Sbjct: 236 VEK 238


>gi|78222581|ref|YP_384328.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
           GS-15]
 gi|78193836|gb|ABB31603.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
           GS-15]
          Length = 248

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 5/246 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
               +ILV+PQ   N+GMV RAM N  L +LR+V         +A   + +A  +++  R
Sbjct: 7   NNISVILVEPQSPGNVGMVCRAMKNMGLAELRIVK-GCPLDHPEAYKFAVSAKDLLEGAR 65

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF +L+EA+AD     ATT R+    + + +P E A  +   +  G    ++FGRE  GL
Sbjct: 66  VFPSLEEALADTELSVATTRRHGKYRQEIYSPGEIAGKIVTNLA-GNRAALVFGREDSGL 124

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           T +E++L     + P +  + SLN++QAVL+  +E    + +       E  T A     
Sbjct: 125 TTDELSLCRWHATIPTSAEYGSLNLAQAVLIFCYELF--AGLGEGTVAGEARTLAGSAAQ 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +    +E +L   G+  P +    ++  +  IF R EL   EV +LRG+++ +D  + Q
Sbjct: 183 EALFGQMERTLLRIGFLNP-QNPDHIMRTVRRIFSRAELDDREVAILRGMMTQIDWAADQ 241

Query: 253 SSRRNN 258
              +  
Sbjct: 242 FKGKKG 247


>gi|56552099|ref|YP_162938.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241762049|ref|ZP_04760133.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752372|ref|YP_003225265.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56543673|gb|AAV89827.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373515|gb|EER63102.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551735|gb|ACV74681.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 243

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 101/242 (41%), Positives = 148/242 (61%), Gaps = 4/242 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P IILV PQLGENIG  ARAM NF L  LRLV PRDGWP+  A  +++ AD V+   RVF
Sbjct: 6   PAIILVRPQLGENIGKAARAMLNFGLDDLRLVAPRDGWPNPSAGPAASGADRVLQQARVF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EA+AD   +YATT R R   K V+ P++AA  ++E+      VGI+FG ER GL  
Sbjct: 66  PTVAEAVADCAHVYATTVRKRGVTKPVMTPEQAAQTIHEQE---GGVGILFGPERAGLET 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +++AL+  II+ PVNP F SLN++QAV+L+ +E  +   ++    V +   PA + EL +
Sbjct: 123 DDVALARTIITVPVNPEFSSLNLAQAVILVAYEWSKGQTLAQPTKV-DMEPPAPQEELEA 181

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
            + +LE  L++ GYF P+ +   +   L ++  +P     E+  LRG++STL+K    + 
Sbjct: 182 MIGHLENMLDKNGYFFPIPRIPTIKRTLRTLLTKPSWNSMEIRTLRGVLSTLEKPRHNAH 241

Query: 255 RR 256
           + 
Sbjct: 242 KG 243


>gi|87121814|ref|ZP_01077700.1| putative rRNA methylase [Marinomonas sp. MED121]
 gi|86162843|gb|EAQ64122.1| putative rRNA methylase [Marinomonas sp. MED121]
          Length = 247

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 125/242 (51%), Gaps = 3/242 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L++     N+G +ARAM N  L+ L LV+P D +PSE+A S +A A  ++++ 
Sbjct: 2   LSNIRIVLINTFHPGNVGAIARAMKNMGLSNLYLVDPND-YPSEEATSRAAGAVDLLENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +    +EAIAD   +  T+AR+R     ++  +E A        + Q + I+FGRE+ G
Sbjct: 61  TIVETFEEAIADCSLVVGTSARHRTFQLPIMNARECAESAV-IEATNQPIAIVFGREKTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L N+EIA  +  +    N  +P LNISQAV ++ +E    S   S     E      KG+
Sbjct: 120 LLNDEIAQCHRQVYIDANDEYPVLNISQAVQIVAYEIWMASQNKSANTDVEVAEYPRKGD 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +  F  +LE +L +  +        K+L+ L   F R    + E+ +LRG+++ + + + 
Sbjct: 180 MDLFHTHLEETLYDINFVIKNH-PGKVLEKLQRFFNRSRPEKSELGILRGVLAAVQRETE 238

Query: 252 QS 253
           ++
Sbjct: 239 KA 240


>gi|187924494|ref|YP_001896136.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           phytofirmans PsJN]
 gi|187715688|gb|ACD16912.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           phytofirmans PsJN]
          Length = 353

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 17/259 (6%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60
           P   +L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 86  PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 145

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ S  V   L +A++ +H+  A TAR R        P+ AA +  E+   G+ 
Sbjct: 146 ASGADDVLASAHVVPTLADALSGVHWSIALTARLREYGPPQWTPRAAAGIAREQALHGE- 204

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + ++FG ER GL+NE++   +A+   P NP + SLN++QAV ++ +E     + +     
Sbjct: 205 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTMYLSAGSGAA 264

Query: 181 -------------KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
                        +     A   E+ S   +LE +L    +  P    KK++  L  +F 
Sbjct: 265 AAQTAPQAAAGEGEAVGARAASDEIESMFTHLESALVALEFLDPA-NPKKLMSRLRRLFA 323

Query: 228 RPELMREEVFLLRGIVSTL 246
           R  L REEV ++RGI   +
Sbjct: 324 RSGLEREEVNIVRGIAKHI 342


>gi|307824418|ref|ZP_07654643.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
           tundripaludum SV96]
 gi|307734402|gb|EFO05254.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
           tundripaludum SV96]
          Length = 246

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 80/247 (32%), Positives = 130/247 (52%), Gaps = 11/247 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG VARAM N  +  L LV P+  +PS  A S ++ AD V+    V + 
Sbjct: 7   IVLVETTHPGNIGAVARAMKNMKMHNLWLVAPK-IFPSADATSRASGADDVLAGATVCAT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EAIAD   +   +AR R      + P+E A  +      G  V I+FGRE  GL N E
Sbjct: 66  LQEAIADCQVVIGASARGRTISWPEMTPRECAEKVL-INEPGNKVAIVFGRENSGLKNHE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNTPATKGEL 192
           + L + ++  P N  + SLNI+ A  ++ +E    S ++ ++ +    K ++  AT  ++
Sbjct: 125 LDLCHFLLRIPCNSEYSSLNIAAAAQVVCYELFVASGLAEQEQIVVGDKGEDPLATATQM 184

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            SF  +L  +L + G+  P  K K ++  L  I+ R ++  +E+ +LRGI+    + S+ 
Sbjct: 185 ESFYTHLAEALTDIGFMHPA-KSKSIMRRLRRIYNRVQMDTKELDILRGIL----RMSQG 239

Query: 253 SSRRNNV 259
             R N+V
Sbjct: 240 HKRNNDV 246


>gi|152996098|ref|YP_001340933.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150837022|gb|ABR70998.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
          Length = 260

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 4/237 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L++     N+G +ARAM N  LT L LV+P D +PSE+A S +A A  ++++ 
Sbjct: 2   LSNIRIVLINTFHPGNVGAIARAMKNMGLTNLYLVDPND-YPSEEATSRAAGAVDLLENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + S L+EAIAD   +  T+AR+R     ++  +E A  +        NV I+FGRE  G
Sbjct: 61  TIVSTLEEAIADCSLVIGTSARHRTFQLPIMNARECAESVIPEAVD-HNVAIVFGRETTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L N+EIA  +  +    N  +P LNISQAV ++ +E    +  + E   KE      K +
Sbjct: 120 LLNDEIAQCHRQVYIDANDEYPVLNISQAVQIVTYEIWMAN-QNKENYKKETPEYPHKKD 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +  F ++LE +L    +        K+LD L+  F R    ++E+ +LRG+++ + +
Sbjct: 179 MDLFYEHLEETLYGINFII-RSHPGKVLDKLHRFFNRSRPEKQELGILRGVLAAVQR 234


>gi|153216245|ref|ZP_01950345.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|124114390|gb|EAY33210.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
          Length = 244

 Score =  288 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTN+E
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +   +  ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSLQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRVFTRARPEAQEINILRGILTSVQK 238


>gi|229525392|ref|ZP_04414797.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229338973|gb|EEO03990.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
           VL426]
          Length = 244

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTNEE
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +EV +LRGI++++ K
Sbjct: 186 FYAHLEQVIIQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEVNILRGILTSVQK 238


>gi|171320744|ref|ZP_02909755.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MEX-5]
 gi|171094009|gb|EDT39111.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MEX-5]
          Length = 273

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 16/260 (6%)

Query: 1   MTPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           + P AP    +A  P           +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 5   LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64

Query: 52  W--PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
                  A + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA 
Sbjct: 65  HVQDDPDAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QA+ ++ +E  
Sbjct: 125 QACMQVGTG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183

Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
              +       +   E  T A   E+     +LE +L    +  P    KK++  L  +F
Sbjct: 184 VAFLEQGSELHQAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242

Query: 227 IRPELMREEVFLLRGIVSTL 246
            R  L REEV +LRGI   +
Sbjct: 243 ARTGLEREEVNILRGIAKHI 262


>gi|332708821|ref|ZP_08428792.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
 gi|332352363|gb|EGJ31932.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
          Length = 288

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 15/275 (5%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P       G  I+LV+P    N+G VAR M N  L+QL LVNP+    S+ A+  + +
Sbjct: 18  EQPSTLKMYMGVRIVLVEPAGPLNVGSVARVMKNMGLSQLVLVNPQCDHLSQDAQQMAVH 77

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              +++  +V + + + +       ATTAR+R    ++  P+ A   L   + +G    +
Sbjct: 78  GVDILEKAQVVATIPDGLVGCQRAIATTARSRAIPTTLEHPRTALPWL---LSAGVTSAL 134

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----- 178
           IFG E  GL+N+E+  +   +  P +  +P LN++QAV +  +E  +  +  S       
Sbjct: 135 IFGPESRGLSNDELNHAQRFVRIPTSSTYPVLNLAQAVTVCCYELYQYQLYQSTHQPSPV 194

Query: 179 ------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
                         A    +  + ++LE  L + GY  P  K  + ++ L  +  R    
Sbjct: 195 PSQPLSPAPPYQDSAPLDLIERYSNHLEALLLKIGYLYPHTKAAR-MEKLRRLLNRATPT 253

Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
            EE+ +LRG+V  ++   +   +       K  +S
Sbjct: 254 TEEINMLRGMVRQVEWALQFLPKSGVDDPSKPNQS 288


>gi|167627612|ref|YP_001678112.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|241668183|ref|ZP_04755761.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876718|ref|ZP_05249428.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597613|gb|ABZ87611.1| rRNA methylase, SpoU family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842739|gb|EET21153.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 249

 Score =  288 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 7/249 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFDNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEAIALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           + + R+  NL+EA+ D+ ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VKNARIVPNLQEALDDIDYVVGTSARVRRVSLPIEPISKVATNILNKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + ++  S+ K V E   
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQTVEISDLKEVPEYTH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMLQSGFLDK-DKPGHVMDKMRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLDKFSR 251
           +++LD   +
Sbjct: 239 LTSLDNKGK 247


>gi|218437496|ref|YP_002375825.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7424]
 gi|218170224|gb|ACK68957.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7424]
          Length = 253

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q   +   IILV+P    N+G VAR M N  L +L LVNPR    S++A+  + +   ++
Sbjct: 3   QTPLEEIKIILVEPAGALNVGSVARVMKNMGLKRLILVNPRCDPFSDEAKRMAVHGQDIL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           + +++ ++L +A+       ATT+R R     +  P++A   L +   SG    +IFG E
Sbjct: 63  EQLQLVNSLPQALTGCQRAIATTSRMRTLPTVLETPRDALPWLLD---SGVKGALIFGPE 119

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL+NEE+  +   +  P NP +PSLN++QAV + V+E  + ++    K  K ++  A+
Sbjct: 120 DRGLSNEELNYAQRFVCIPANPDYPSLNLAQAVAVCVYELYQATLTPVAKR-KSEDESAS 178

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L  +   LE  L + GY  P     + ++    ++ +  L REE+ +LRGI+  ++ 
Sbjct: 179 LEDLERYYQDLETLLLKIGYLYPHTASAR-MEKFRRMYYKANLNREELAMLRGILRQMNW 237

Query: 249 FSRQSSR 255
             +  ++
Sbjct: 238 AMQHLAK 244


>gi|229513115|ref|ZP_04402581.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
 gi|229350008|gb|EEO14962.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
          Length = 244

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTNEE
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPESQEINILRGILTSVQK 238


>gi|167586794|ref|ZP_02379182.1| RNA methyltransferase TrmH, group 1 [Burkholderia ubonensis Bu]
          Length = 269

 Score =  288 bits (737), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 126/257 (49%), Gaps = 7/257 (2%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60
           P  P L+        +LV+P    N+G  ARA+     ++L LV PR        +A + 
Sbjct: 14  PSGP-LRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAM 72

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA     ++ +G +
Sbjct: 73  ASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACAQVGTG-D 131

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEK 178
           + ++FG ER GL NE +   +A+   P NP + SLN++QAV ++ +E     +   S+  
Sbjct: 132 IALVFGNERTGLANEHVDQCSALAHIPANPAYSSLNLAQAVQVLAYELRIAFLEHASASL 191

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
              E  T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV +
Sbjct: 192 PRPEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNI 250

Query: 239 LRGIVSTLDKFSRQSSR 255
           LRGI   +   SR   R
Sbjct: 251 LRGIAKHILLKSRTPDR 267


>gi|298492564|ref|YP_003722741.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234482|gb|ADI65618.1| RNA methyltransferase, TrmH family, group 1 ['Nostoc azollae' 0708]
          Length = 245

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 7/244 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  I+LV+P    N+G +AR M NF L  L LVNP+    S  A   + +A  +++S  +
Sbjct: 5   GIRIVLVEPAGPLNLGSIARVMKNFGLDNLVLVNPQCDHLSFDALKMAVHAKEILESAVI 64

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L EA+     + AT  R+ +    + +P+ +   L E     + V +IFGRE  GL+
Sbjct: 65  FPTLPEALQGCVRVIATIGRDYSGHIPLESPRTSLPWLLEETE--KPVALIFGREDRGLS 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP----ATK 189
           NEE+  ++ +I  P NP +PSLN++ AV +  +E  +  +    K       P    A  
Sbjct: 123 NEELNYAHKLIFIPTNPQYPSLNLATAVSICCYELSQYELSQLAKIFTTPKPPTTEMAPV 182

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             L  +   LE  L   GY  P     + ++    ++ R  +   EV +LRGI+  ++  
Sbjct: 183 DMLEPYYQELESLLLFIGYLYPHTAASR-MEKFRHLYNRAHIQTTEVAMLRGILRQIEWA 241

Query: 250 SRQS 253
            R S
Sbjct: 242 IRNS 245


>gi|306440754|pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM
           RHODOBACTER Sphaeroides
          Length = 249

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 135/239 (56%), Gaps = 1/239 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV PQ GENIG  ARA  NF L +LR+V+PRDGWP+ KA + ++ A  ++D   +F
Sbjct: 5   PVFILVRPQXGENIGAAARAXLNFGLGRLRIVDPRDGWPNPKAVAXASGAGRLLDHAGLF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EAI D  +++ATTAR R   K V  P+ A          G+ VGI+FG ER GL N
Sbjct: 65  PTVAEAIRDCDYVFATTARGRELTKPVXTPERAXAHGRALTGEGRRVGILFGPERTGLEN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           E++AL+NAI++ PVNP F SLN++Q VLL+ +E       +  + +       A+  E+ 
Sbjct: 125 EDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQHDETPPEVIDXARVDFASGLEVE 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
              D+ E  LE  G+F P EK      +L + + R  L R +V  L G +  +    +Q
Sbjct: 185 KLGDHFEEKLEAAGFFFPPEKAPGXKLNLRNXWARLPLTRADVQTLHGXLRQIAWKLKQ 243


>gi|153829408|ref|ZP_01982075.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|148875128|gb|EDL73263.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
          Length = 244

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTN+E
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPETQEINILRGILTSVQK 238


>gi|307292706|ref|ZP_07572552.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306880772|gb|EFN11988.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 351

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/238 (40%), Positives = 139/238 (58%), Gaps = 4/238 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + ++  PVI+LV PQLGENIG  ARAM NF L ++RLV+PRDGWP+  A  S+A AD V+
Sbjct: 112 EPASPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVVL 171

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D   VF  L +A+AD   +YATT R R   K V+ P+EAA  ++           +FG E
Sbjct: 172 DKAEVFETLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHAAA---GRSAYVFGPE 228

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           R GL  E++AL+  I++ P+NP F SLN++QAV+L  +E  + + +  +  V +   PA 
Sbjct: 229 RSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQASLE-QPTVVDLGEPAP 287

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           + EL   +   E  LE  GYF P ++       L ++  +P     EV  LRG++S L
Sbjct: 288 QAELEGMIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 345


>gi|134301622|ref|YP_001121590.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|187931770|ref|YP_001891755.1| rRNA methylase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134049399|gb|ABO46470.1| RNA methyltransferase, TrmH/SpoU family, group 1 [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|187712679|gb|ACD30976.1| rRNA methylase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 247

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + +I  S  K V E N 
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|304321241|ref|YP_003854884.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
           HTCC2503]
 gi|303300143|gb|ADM09742.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
           HTCC2503]
          Length = 293

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/251 (39%), Positives = 150/251 (59%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P++ILV PQLG+NIG  ARAM NF L  LRLV PRDGWP+  A++ +A A  V+D VRV
Sbjct: 38  HPLVILVRPQLGQNIGATARAMLNFGLKGLRLVAPRDGWPNADAKAMAAGAAEVLDGVRV 97

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  + EA+AD H++ ATTAR+R  F  V  P + A  L  R    +   I+FG E+ GL 
Sbjct: 98  FGTVAEAVADCHYVVATTARHRGVFLPVHTPVDTAGELRVRAARAERTAILFGAEKAGLE 157

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            EE+A ++A+++ PVNP FPSLN++QAVL++ +E  + +  +       Q  PAT+ E  
Sbjct: 158 TEEVAHAHALVTIPVNPAFPSLNLAQAVLVVAYEWAQAAGAAPLFTSPYQEDPATQAERE 217

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
               +L  +L+  GYF P  K++ +  +L ++    +L   E+ +L G+V   ++   + 
Sbjct: 218 QLFTHLSTALDRAGYFYPSHKREVLSHNLRTLLANADLSPSELRVLHGVVRQFERHLPEK 277

Query: 254 SRRNNVLLQKT 264
           S+ +  + Q+ 
Sbjct: 278 SQTDKSVPQEE 288


>gi|119386406|ref|YP_917461.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
 gi|119377001|gb|ABL71765.1| RNA methyltransferase, TrmH family, group 1 [Paracoccus
           denitrificans PD1222]
          Length = 246

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 105/238 (44%), Positives = 144/238 (60%), Gaps = 4/238 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRV 73
           P IIL+ PQ+GENIG  ARAM NF LT +RLV PRDGWP+ +A + ++ A   V+D  RV
Sbjct: 7   PAIILMRPQMGENIGAAARAMLNFGLTDMRLVAPRDGWPNPRAVAMASGAAGRVLDRARV 66

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F+ L EA+AD+ + YATTAR R   K VL P  A     +R+  G  V +IFG ER GL 
Sbjct: 67  FATLAEAMADVDYAYATTARGRELTKPVLTPATAMADARDRVAQGGRVAVIFGPERAGLE 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN---VKEQNTPATKG 190
           NE++A +NAII+ PVNP FPSLN++QAVLL  +E  ++S+           +   PAT+ 
Sbjct: 127 NEDVARANAIITVPVNPDFPSLNLAQAVLLTGYEWAQDSLPPQPAPHGRRPDGEAPATRL 186

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           E+    D+ E  L E G+F P EK   M   L +++ R  L R +  +  G++  L +
Sbjct: 187 EIEKLADHWEERLAEAGFFFPPEKAPAMKLTLRNLWSRLPLTRADTRIFHGMLRQLIR 244


>gi|261493539|ref|ZP_05990059.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495378|ref|ZP_05991826.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261308883|gb|EEY10138.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310721|gb|EEY11904.1| rRNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 238

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 8/241 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                IILV+  L  NIG  ARAM    LT LRLV P+     E+A + +A A  V+D+ 
Sbjct: 4   LNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQ-PLDEQAEALAAGAKDVLDNA 62

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + ++   EAIAD   +  T+AR R+   +++ P++   ++  R   G  V I+FGRER G
Sbjct: 63  QCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRANLG-KVAIVFGRERVG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189
           LTNEE+      ++FP NP + SLN++ AV L  +E     + +S   + +       T 
Sbjct: 122 LTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTA 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             L  F  + E    E G+ R       ++  L  ++ R EL   E+ LLRG+++ ++K 
Sbjct: 182 QALEHFFAHTERLYTELGFIRN----DSVMLKLRRLYQRAELETNELNLLRGMLTAVEKA 237

Query: 250 S 250
           +
Sbjct: 238 N 238


>gi|261252065|ref|ZP_05944638.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
 gi|260935456|gb|EEX91445.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
          Length = 241

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L LV+P+     E+  + +A A  + ++ 
Sbjct: 2   LNNVKVVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQTLALAAGAADIAENA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V   L EA+AD   +  ++AR+R     +L P+E              V ++FGRER G
Sbjct: 61  TVVDTLTEAVADCALVVGSSARSRTLEWPMLEPRECGQKFVSEGQE-SPVALVFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTN+E+   +  +  P NP + SLN++ AV  + +E     +    S+    EQ      
Sbjct: 120 LTNDELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEIRMAYLDNEQSQYQAPEQVEYPRH 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            EL  F  +LE   ++  +    ++  K+++ L  +F R     +E+ +LRG+++ ++K
Sbjct: 180 KELEMFFAHLEKVAKDTQFI-SEDQPGKVMNKLRRLFNRARPEAQELNILRGVLTAVEK 237


>gi|153824534|ref|ZP_01977201.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|149741752|gb|EDM55781.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 244

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTNEE
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +   + +     Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLAMQQSSQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|88797963|ref|ZP_01113550.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
 gi|88779160|gb|EAR10348.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
          Length = 239

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 4/239 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L+      NIG  ARAM N  L+ L LV+P D +PS++A S +  A  +++  
Sbjct: 2   LSNIRIVLIRTWHAGNIGATARAMKNMGLSNLVLVDPVD-FPSDEATSRAGQAVDLLEQA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V + L+EAIAD + +  T+AR+R+     L  +  A         G  V I+FGRER G
Sbjct: 61  NVVATLEEAIADCNLVIGTSARDRSIRLPALTAEACAEKACRESDQG-TVAIVFGRERMG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEEI   +  ++   NP +P LN+SQAV L+ WE  + +   +      +  P  + E
Sbjct: 120 LSNEEIQQCHFQLNIATNPEYPVLNLSQAVQLVAWEVFKVASSETPPESDVEPYP-RQRE 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           L  F  +L  + E  G+  P     +++D L ++F R    R+E+ +LRG +S++D+ +
Sbjct: 179 LEQFYQHLAKTSEATGFLNPAH-PGQVMDHLRALFRRARPTRKELSILRGFLSSIDQHT 236


>gi|262402869|ref|ZP_06079430.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
 gi|297581145|ref|ZP_06943069.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|262351651|gb|EEZ00784.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
 gi|297534461|gb|EFH73298.1| RNA methyltransferase [Vibrio cholerae RC385]
          Length = 244

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTNEE
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|330817527|ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
           BSR3]
 gi|327369920|gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
           BSR3]
          Length = 258

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 127/250 (50%), Gaps = 6/250 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKAR 58
           ++P  P    + +    +LV+P    N+G  ARA+     +QL LV PR  +     +A 
Sbjct: 3   ISPPIPAPPQAFRAARFVLVEPSHPGNVGAAARALKTMGFSQLVLVAPRVAEVLADPEAI 62

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           + ++ AD V+ + R+ + L EA+A + +  A TAR+R      LAP+ AA     ++  G
Sbjct: 63  AMASGADDVLAATRIVATLDEALAGVSWSAALTARSREYGPPRLAPRAAAGEARRQL-DG 121

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SS 176
             +  +FG ER GL+NE +   +AI   P NP + SLN+SQA+ ++ +E     +   ++
Sbjct: 122 GEIAFVFGNERVGLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELRVALLEGQAA 181

Query: 177 EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
           E +     T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV
Sbjct: 182 EHHDGAAGTLAQADEIEKMFAHLEQALVALEFLDP-RNPKKLMPRLRRLFSRAGLEREEV 240

Query: 237 FLLRGIVSTL 246
            +LRG+   +
Sbjct: 241 NILRGVAKHI 250


>gi|227080925|ref|YP_002809476.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|298499121|ref|ZP_07008928.1| RNA methyltransferase [Vibrio cholerae MAK 757]
 gi|227008813|gb|ACP05025.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|297543454|gb|EFH79504.1| RNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 244

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTN+E
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAKQ-HSVAMVFGRERTGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|254361622|ref|ZP_04977760.1| rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|153093140|gb|EDN74156.1| rRNA methyltransferase [Mannheimia haemolytica PHL213]
          Length = 238

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 8/241 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                IILV+  L  NIG  ARAM    LT LRLV P+     E+A + +A A  V+D+ 
Sbjct: 4   LNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQ-PLDEQAEALAAGAKDVLDNA 62

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + ++   EAIAD   +  T+AR R+   +++ P++   ++  R   G  V I+FGRER G
Sbjct: 63  QCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELVVNRTNLG-KVAIVFGRERVG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189
           LTNEE+      ++FP NP + SLN++ AV L  +E     + +S   + +       T 
Sbjct: 122 LTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRMAYLQNSGEKQPLAADKDYPTA 181

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             L  F  + E    E G+ R       ++  L  ++ R EL   E+ LLRG+++ ++K 
Sbjct: 182 QALEHFFAHTERLYTELGFIRN----DSVMLKLRRLYQRAELETNELNLLRGMLTAVEKA 237

Query: 250 S 250
           +
Sbjct: 238 N 238


>gi|15640765|ref|NP_230395.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591445|ref|ZP_01678721.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121729723|ref|ZP_01682164.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147675237|ref|YP_001216231.1| RNA methyltransferase [Vibrio cholerae O395]
 gi|153817241|ref|ZP_01969908.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|153822720|ref|ZP_01975387.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|229505640|ref|ZP_04395150.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
 gi|229510688|ref|ZP_04400167.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
 gi|229517810|ref|ZP_04407254.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
 gi|229530124|ref|ZP_04419514.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229608658|ref|YP_002879306.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254285464|ref|ZP_04960428.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|254847883|ref|ZP_05237233.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|255744553|ref|ZP_05418504.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
 gi|262161313|ref|ZP_06030424.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|262168806|ref|ZP_06036501.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
 gi|262190471|ref|ZP_06048722.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
 gi|9655191|gb|AAF93911.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546696|gb|EAX56875.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121628540|gb|EAX61023.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|126512157|gb|EAZ74751.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126519751|gb|EAZ76974.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|146317120|gb|ABQ21659.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|150424326|gb|EDN16263.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|227012570|gb|ACP08780.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|229333898|gb|EEN99384.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229344525|gb|EEO09499.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
 gi|229350653|gb|EEO15594.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
 gi|229357863|gb|EEO22780.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
 gi|229371313|gb|ACQ61736.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254843588|gb|EET22002.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|255737584|gb|EET92978.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
 gi|262022924|gb|EEY41630.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
 gi|262029063|gb|EEY47716.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|262033643|gb|EEY52132.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
 gi|327483533|gb|AEA77940.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae LMA3894-4]
          Length = 244

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTN+E
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNDE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 238


>gi|84687187|ref|ZP_01015068.1| tRNA/rRNA methyltransferase (SpoU) [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664775|gb|EAQ11258.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2654]
          Length = 249

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 143/240 (59%), Gaps = 1/240 (0%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            +   P  +LV PQ+GENIG  ARAM NF L ++R+V PRDGWP+ KA + ++ A  V+D
Sbjct: 6   QTGPQPAFVLVRPQMGENIGAAARAMLNFGLERMRVVGPRDGWPNPKAVAMASGAGRVLD 65

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           +  V+ +L  A+AD  ++YATTAR+R   K V  P+ A          G+ V ++FG ER
Sbjct: 66  AAVVYDDLPAALADCDYVYATTARSRELAKPVRTPERAMAEARAMRAEGKRVAVLFGPER 125

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-AT 188
            GL NE+++ +NAII+ PVNP F SLN++Q+VLL  +E    +I ++ + +    T  AT
Sbjct: 126 AGLENEDVSRANAIITVPVNPEFASLNLAQSVLLTAYEYGRQTIDAAPEVMSLAKTDFAT 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + E+ +  D+ E  L+E G+F P  K   M   L + + R  L R +V +  G++  + +
Sbjct: 186 QVEVEALADHFERRLDEVGFFFPETKAAGMKLVLRNAWTRLSLTRADVQMFHGMLRQIFR 245


>gi|56708339|ref|YP_170235.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670810|ref|YP_667367.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457463|ref|ZP_03665936.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370961|ref|ZP_04986965.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875161|ref|ZP_05247871.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604831|emb|CAG45912.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321143|emb|CAL09295.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569203|gb|EDN34857.1| hypothetical protein FTBG_01707 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841160|gb|EET19596.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159576|gb|ADA78967.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 247

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIHIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + +I  S  K V E N 
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|209884583|ref|YP_002288440.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
           OM5]
 gi|209872779|gb|ACI92575.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
           OM5]
          Length = 391

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/257 (42%), Positives = 164/257 (63%), Gaps = 2/257 (0%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
             + +    GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A  ++A A
Sbjct: 6   KTKPRAELPGPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAERAAAGA 65

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           D ++  V VF  ++ A+AD   ++ATTAR  +  K V+AP+ AA  +   +  G   GI+
Sbjct: 66  DHILTQVEVFETVEAAVADCALLFATTARAHDQAKPVVAPEAAAREIVTEVAQGATAGIL 125

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQ 183
           FGRERWGLTNEE++L+  I++FPVNP F SLN++QAVLLM +E  +  S      ++ E+
Sbjct: 126 FGRERWGLTNEEVSLATRIVTFPVNPGFASLNLAQAVLLMGYEWFKLASGGEIPFSMPER 185

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +  A++ ++ +F   L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V
Sbjct: 186 SERASQHQMEAFFTNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPTKQDMHTLHGVV 245

Query: 244 STLDKFSRQSSRRNNVL 260
             L +  R+   +  VL
Sbjct: 246 MALAE-GRKGPAKGGVL 261


>gi|126726420|ref|ZP_01742261.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
 gi|126704283|gb|EBA03375.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
          Length = 256

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 1/239 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +   P IILV PQ+GENIG  ARAMWNF L ++R+V+PRDGWP+ KA + ++ A  V+D+
Sbjct: 14  AGPQPSIILVRPQMGENIGAAARAMWNFGLERMRIVDPRDGWPNPKATAMASGAAQVMDN 73

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V ++ + ++A+AD ++++ATTAR R+  K +++P+ A     + + SGQ VGI+FG ER 
Sbjct: 74  VSIYDDTRDAVADCNYVFATTARGRDLTKPIMSPEAAMKHTRDLMASGQKVGILFGPERA 133

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATK 189
           GL N++I+ +NAIIS PVNP F SLN+ Q VLL+ +E    +  +  +     +   A  
Sbjct: 134 GLENDDISRANAIISVPVNPAFASLNLGQCVLLLSYEYRRLANQAPSELFDLSKTRWAEA 193

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            E+ S  D+ E  LEE  +F P  K   +  +L ++  R  L   +V L  GI+  L +
Sbjct: 194 KEVESLQDHFEEKLEEAHFFFPEHKAAHLKKNLRNMLSRLPLTINDVGLFHGILRALTR 252


>gi|296114999|ref|ZP_06833643.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978461|gb|EFG85195.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 258

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/244 (38%), Positives = 147/244 (60%), Gaps = 1/244 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
             PVIILV PQ+ ENIG  ARAM N  L  +RLV PRDGWP E+A  +++ AD +++S  
Sbjct: 15  NSPVIILVRPQMAENIGTTARAMANGGLFHMRLVAPRDGWPQERAWRAASGADRILESAT 74

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF  + +A+ADLH ++AT  R R+  K V+  +  A  L      G   G++FG ER GL
Sbjct: 75  VFDTVGDAVADLHHVFATCPRPRHIVKPVMTARGGAAELRAISRRGLRTGLLFGPERAGL 134

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191
            NE++A ++A+I +P+NP F SLN++QAV++M +E       +  +  +  +   ATKGE
Sbjct: 135 DNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYEWWMTQDDTPPRELMTNETHVATKGE 194

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L +F+ +L   L+E G+ R  +K+  M+ +L   F R E+  +E+  L G+V+ L +  +
Sbjct: 195 LDNFMRHLIGDLDECGFLRNEQKRPGMVRNLRHFFERGEVTEQELRTLHGVVTELARGRK 254

Query: 252 QSSR 255
              +
Sbjct: 255 ARQQ 258


>gi|115352170|ref|YP_774009.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282158|gb|ABI87675.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           AMMD]
          Length = 273

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 16/260 (6%)

Query: 1   MTPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           + P AP    +A  P           +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 5   LNPAAPSESGAASSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 64

Query: 52  --WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
                 +A + ++ AD V+ S  V   L +A++ +H+  A TAR R      LAP+ AA 
Sbjct: 65  NVQDDPEAIAMASGADDVLASAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAE 124

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QA+ ++ +E  
Sbjct: 125 QACMQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELR 183

Query: 170 ENSIVSS---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
              +           E  T A   E+     +LE +L    +  P    KK++  L  +F
Sbjct: 184 VAFLERGSELHHAQAEVGTLAQSDEIERMYAHLENALVALDFLDP-RNPKKLMPRLRRLF 242

Query: 227 IRPELMREEVFLLRGIVSTL 246
            R  L REEV +LRGI   +
Sbjct: 243 ARTGLEREEVNILRGIAKHI 262


>gi|163741081|ref|ZP_02148473.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
           gallaeciensis 2.10]
 gi|161385434|gb|EDQ09811.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
           gallaeciensis 2.10]
          Length = 232

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 138/232 (59%), Gaps = 1/232 (0%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           +GEN+G  ARAMWNF L ++R+V PRDGWP+ KA + ++ A  ++D  R+  +L  AI D
Sbjct: 1   MGENVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLAEDLAGAIED 60

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F++ATTAR R   K V +P+ A  +  E+I +G+ V ++FG ER GL NE+IA +NAI
Sbjct: 61  CDFVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLENEDIARANAI 120

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGELLSFLDYLEIS 202
           IS PVNP F SLN+ Q VLL  +E        +       ++  A+  ++ + +++ E  
Sbjct: 121 ISVPVNPEFASLNLGQCVLLTAYEWRRQVTEVAPVVTDLGKSDWASHADVDALVNHYEDR 180

Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           L++ G+F P +K   M     ++F R  L R +V +L GI+  + ++  +  
Sbjct: 181 LDDAGFFFPPDKAPSMKTVFRNMFSRMPLTRADVQMLHGIMRQMVRWKEKRD 232


>gi|218508182|ref|ZP_03506060.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli Brasil
           5]
          Length = 227

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 122/225 (54%), Positives = 162/225 (72%), Gaps = 2/225 (0%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GPVIILV+PQ+GENIGMVARAM NF L  LRLVNPRDGWP+EKA+++
Sbjct: 1   MAGTNSERQLLAEGPVIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAA 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD VI   RV+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L  +   G+ 
Sbjct: 61  ASKADHVIAGTRVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVFAAETLRTKFRGGEA 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++ +   E   
Sbjct: 121 TGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMEDIEAVP 180

Query: 181 KE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
            +  +  P+TK +L    D LE +L+ R YF P  KK KM+D+L 
Sbjct: 181 FQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLR 225


>gi|89256502|ref|YP_513864.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314934|ref|YP_763657.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502613|ref|YP_001428678.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|254367834|ref|ZP_04983854.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|290953971|ref|ZP_06558592.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312648|ref|ZP_06803398.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144333|emb|CAJ79620.1| SpoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129833|gb|ABI83020.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253644|gb|EBA52738.1| spoU rRNA methylase family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|156253216|gb|ABU61722.1| RNA methyltransferase, TrmH family, group 1protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 247

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 133/245 (54%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   E A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGIDYE-ALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + +I  S  K V E N 
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|307256894|ref|ZP_07538672.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864628|gb|EFM96533.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 242

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 10/243 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+ 
Sbjct: 2   NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLA 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E     +        + + E+  
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F ++ E   ++  + R       ++  L  ++ R EL   E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235

Query: 246 LDK 248
           ++K
Sbjct: 236 VEK 238


>gi|208779944|ref|ZP_03247288.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida
           FTG]
 gi|208744399|gb|EDZ90699.1| RNA methyltransferase, TrmH family, group 1 [Francisella novicida
           FTG]
          Length = 247

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + +I  S+ K V E N 
Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|118497879|ref|YP_898929.1| rRNA methylase [Francisella tularensis subsp. novicida U112]
 gi|194323852|ref|ZP_03057628.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis
           subsp. novicida FTE]
 gi|118423785|gb|ABK90175.1| rRNA methylase, SpoU family [Francisella novicida U112]
 gi|194322216|gb|EDX19698.1| RNA methyltransferase, TrmH family, group 1 [Francisella tularensis
           subsp. novicida FTE]
          Length = 247

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKIATNILSKIQESDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + +I  S+ K V E N 
Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAIEISNLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|253997035|ref|YP_003049099.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253983714|gb|ACT48572.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera mobilis
           JLW8]
          Length = 247

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 3/236 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           QN      ++L       NIG  ARAM    L  L LVNP   +P  +A S +  A  ++
Sbjct: 4   QNIFNNIRVVLCQTSHPGNIGSTARAMKTMGLNHLYLVNPL-HFPDPQATSLATGAADLL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++  V S+L+EA+         +AR R     ++  +E A      +   Q + ++FG E
Sbjct: 63  ETATVCSSLQEALTGCVLAIGMSARKRQISHELVNVRE-AAHRAASLAQNQPIALVFGTE 121

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL+N E+     +   P NP + SLN++ AV +M +E     +    +  +     AT
Sbjct: 122 MSGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMTYEIRMAILEGKLEAAENPPELAT 181

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
              L  F  +LE +L + GY  P    KK+ + +  I+ R +L +EEV LLRGI++
Sbjct: 182 NEALEGFYGHLEETLVKIGYLNP-TAPKKLSERIRRIYARAKLEKEEVNLLRGILT 236


>gi|299131733|ref|ZP_07024928.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2]
 gi|298591870|gb|EFI52070.1| RNA methyltransferase, TrmH family, group 1 [Afipia sp. 1NLS2]
          Length = 393

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 111/257 (43%), Positives = 166/257 (64%), Gaps = 2/257 (0%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
             + +    GPV++LV+PQLGENIGM ARAM NF LT+LRLV PRDGWP+  A+ ++A A
Sbjct: 6   KTKPRTDLPGPVVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAQRAAAGA 65

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           D +++ V +F  ++ A+AD   ++ATTAR  +  K V+AP  AA  + E        GI+
Sbjct: 66  DHILERVELFETVEAAVADCALLFATTARAHDQAKPVVAPDAAAREIVEGTAQDITAGIL 125

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQ 183
           FGRER GLTNEE+AL+N I++FPVNP F SLN++QAVLLM +E  +  S      ++ E+
Sbjct: 126 FGRERSGLTNEEVALANRIVTFPVNPGFASLNLAQAVLLMGYEWFKLASGGMIPFSMPER 185

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           + PA++ ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V
Sbjct: 186 SEPASQHQMQAFFDNLVAELDKVEFLRPAEKRDVMLVNLRNIFSRMEPSKQDMHTLHGVV 245

Query: 244 STLDKFSRQSSRRNNVL 260
             + +  R+   +  VL
Sbjct: 246 MAIAE-GRKGPAKGGVL 261


>gi|86606598|ref|YP_475361.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86555140|gb|ABD00098.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           JA-3-3Ab]
          Length = 269

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 9/259 (3%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   +   Q       ++LV P    N+G +AR M N  L Q  LV+P+      +A + 
Sbjct: 1   MPASSNWAQERLAQVRLVLVRPAGPRNLGAIARVMKNMGLRQWVLVDPQCDPLDAEAVTM 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF--KSVLAPKEAAIVLNERIFSG 118
           + +A  ++   R    L EA+     ++ T  R         + +P++A   L       
Sbjct: 61  AVHATDLLRQARQVPTLAEALQGCVQVFGTAGRREPYPPEWQIQSPRQAFPELLA----A 116

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
               ++FG E  GL+NEE+AL +  I  P +P +PSLN++QAV +  +E       +   
Sbjct: 117 GPAALVFGPEDRGLSNEELALCHRQIQIPTDPAYPSLNLAQAVGICCYELRTLLCQNLPP 176

Query: 179 NVKEQ--NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
            V     + PA    L  F  +LE  L + GY  P   ++KML  L ++F R  L+  EV
Sbjct: 177 PVTSSGISKPAPFELLEGFFGHLEALLLQIGYLHPHTARRKML-KLRALFHRAGLIVSEV 235

Query: 237 FLLRGIVSTLDKFSRQSSR 255
            LLRGI+  L    + S R
Sbjct: 236 ALLRGILRQLQWSQKSSPR 254


>gi|254374689|ref|ZP_04990170.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548]
 gi|151572408|gb|EDN38062.1| hypothetical protein FTDG_00864 [Francisella novicida GA99-3548]
          Length = 247

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 135/245 (55%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATSILNKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + ++  S+ K V E N 
Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|330830082|ref|YP_004393034.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328805218|gb|AEB50417.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565]
          Length = 216

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    LTQL LV+P+   P + A + +A A  V+ + R+   L +AIAD   +  T+AR+
Sbjct: 1   MKTMGLTQLVLVDPQ-ALPDDNAFALAAGASDVLANARIVPTLDDAIADCGLVIGTSARS 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R     +L P+EA             V ++FGRER GLTN+E+   +  ++ P NP + S
Sbjct: 60  RTLSWPMLDPREAGEKSVVEGMQ-HPVALVFGRERTGLTNDELQKCHYHVAIPANPDYSS 118

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
           LN++ AV  + +E     +       +++    +  +L  F  +LE +L + G+    + 
Sbjct: 119 LNLAMAVQTLCYEVRMRWLQGQAAEPEDEMVYPSAAQLEGFYQHLEQTLMKTGFI-ADDH 177

Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
              ++  L  +F R      E+ +LRGI++++ K  
Sbjct: 178 PGHVMSKLRRLFNRARPEAAELNILRGILTSVQKAH 213


>gi|307245706|ref|ZP_07527792.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306853408|gb|EFM85627.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 243

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 10/243 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      IILV+  L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+ 
Sbjct: 2   NILDQIRIILVETSLPANIGSAARAMKTMGLSNLRLVSPLNPI-DEQAQALAAGAKDVLA 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F + ++AIAD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER
Sbjct: 61  NAQIFDSFEQAIADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNT 185
            GLTNEE+   +  ++FP NP + SLN++ AV L  +E     +        + + E+  
Sbjct: 120 VGLTNEELLKCHYHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKD 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
                 L  F ++ E   ++  + R       ++  L  ++ R EL   E+ LLRG++++
Sbjct: 180 YPNTEALEHFFNHTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTS 235

Query: 246 LDK 248
           ++K
Sbjct: 236 VEK 238


>gi|332184413|gb|AEE26667.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida 3523]
          Length = 249

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 133/245 (54%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEAIALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           + + ++ +NL EA+  + ++  T+AR R     +    + A  +  +I  S + V I+FG
Sbjct: 60  VKNAKIVANLVEALEGVDYVVGTSARVRRVSLPIEPISKVATNILSKIQKSDEKVAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + ++  S+ K V E N 
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+     K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMVQSGFLDK-NKPGHVMDKIRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLN 243


>gi|300023629|ref|YP_003756240.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525450|gb|ADJ23919.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 430

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 113/254 (44%), Positives = 161/254 (63%), Gaps = 12/254 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +IL++PQL +NIGMVARA  NF L  LRLVNPRDGWP+EKAR +++ A+ VID  R F
Sbjct: 172 PSVILMEPQLADNIGMVARACANFGLDDLRLVNPRDGWPNEKARIAASGANYVIDDARPF 231

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+++IADL++I ATTAR R+  K VL P++A      RI  G+  GI+FGRER GL  
Sbjct: 232 EKLEDSIADLNWIAATTARQRDMRKPVLTPEQAIAEARARIARGERCGILFGRERNGLET 291

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-------SIVSSEKNVKE----- 182
            E+A ++A+I  PVN  F SLN++QAVLL+ +E M +        + + EK + E     
Sbjct: 292 GEVANADALIMIPVNSRFASLNLAQAVLLLGYEWMRSDAGRSLGRVTTYEKPLNEGLYMG 351

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           ++ PATK EL+   ++LE  LE  G+F P  +K  +  +L ++  R     +EV  LRGI
Sbjct: 352 RDRPATKEELIGLFEHLERELEANGFFNPAHRKTVVSQNLRTLLTRMNATEQEVRTLRGI 411

Query: 243 VSTLDKFSRQSSRR 256
           V+TL +   ++ + 
Sbjct: 412 VATLAQGKGKARKG 425


>gi|52425783|ref|YP_088920.1| LasT protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307835|gb|AAU38335.1| LasT protein [Mannheimia succiniciproducens MBEL55E]
          Length = 244

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 10/241 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV+     NIG  ARAM    L  L LV+P+ G   E+A + SA A+ V+   
Sbjct: 2   LNNIRLVLVETSHSGNIGSAARAMKTMGLANLYLVSPKQGI-DEQAVALSAGAEDVLRKA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +  EA+AD   +  T+AR R+   +++ P+E   +  +    GQ + I+FGRE++G
Sbjct: 61  VIVKSFDEAVADCSLVIGTSARLRHLQSTLIEPRECGKISIQEAHCGQ-IAIVFGREKFG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK----EQNTPA 187
           LTN+E+      ++ P NP + SLN++ AV L+ +E     +   +        E     
Sbjct: 120 LTNDELLKCRYHLNIPANPDYSSLNLAMAVQLVSYELRMAWLNGRQSESMSDSVEIAQKP 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  EL  F  + E   +  G+     + + ++  L  ++ R  L + E+ +LRG++S ++
Sbjct: 180 TALELEYFFAHTEKLYQSLGFI----QNQGVMQKLRHLYNRVNLKKNELNILRGMLSAVE 235

Query: 248 K 248
           K
Sbjct: 236 K 236


>gi|315633898|ref|ZP_07889187.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Aggregatibacter segnis ATCC 33393]
 gi|315477148|gb|EFU67891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Aggregatibacter segnis ATCC 33393]
          Length = 255

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 15/260 (5%)

Query: 1   MTPYAPQLQNS----AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
           M  YAP L        +   I+L++     NIG  ARAM    LT L LV P+ G   ++
Sbjct: 1   MVEYAPLLNKIKMIMLENIRIVLIETSHSGNIGSTARAMKTMGLTDLVLVAPKQGV-DDQ 59

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           A + +A A+ V+ S  V  N  EA+AD   +  T+AR R+   S++ P+E          
Sbjct: 60  AIALAAGAEDVVKSAVVVENFSEAVADCSLVIGTSARLRHLQNSLIEPRECGEKAINHAI 119

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           SG  V I+FGRER GLTNEE+   +  ++ P NP + SLN++ AV L+ +E     + + 
Sbjct: 120 SG-KVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLISYEIRMAYLATQ 178

Query: 177 EKNVK-----EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
            +  +     + +      EL  F    E   +  G+     + + ++  L  ++ R E+
Sbjct: 179 REENQKMTQTQPDVYPQMQELDYFFTRTEQLYQSLGFI----QNQGVMQKLRRLYSRAEV 234

Query: 232 MREEVFLLRGIVSTLDKFSR 251
            + E+ +L G++S ++K  +
Sbjct: 235 EKTELHILLGMLSAVEKKLK 254


>gi|332289843|ref|YP_004420695.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
 gi|330432739|gb|AEC17798.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
          Length = 248

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 131/253 (51%), Gaps = 13/253 (5%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S     I+LV+     NIG  ARAM    L+QL LV+P+   P+E++ + SA AD V+  
Sbjct: 2   SLDQIKIVLVETSHPGNIGSAARAMKTMGLSQLYLVSPK-VLPNEESIALSAGADDVVKQ 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             + S+ +EAIAD   +  T+AR R+   + + P++   +   R   G  V I+FGRER 
Sbjct: 61  AHIVSSFEEAIADCSLVIGTSARARHLTTTAVTPRDCGELAIVRSAHG-KVAIVFGRERI 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKEQNTP 186
           GLTNEE+   +  ++ P NP + SLN++ AV L+ +E     +   +     + +    P
Sbjct: 120 GLTNEELLKCHYHLNIPANPEYSSLNLAMAVQLVSYEVRMAYLQKQQGYQLHHSRVAEMP 179

Query: 187 AT---KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           A      EL  F    E   ++ G+     +   ++  L  +++R  + R E+ +L+G++
Sbjct: 180 AEGVVAEELEYFFHKTEQVYQQLGFI----QNSAVMKKLRRLYLRTAIQRNELNILQGML 235

Query: 244 STLDKFSRQSSRR 256
           + ++K   +S R+
Sbjct: 236 TAVEKVITESHRK 248


>gi|110833374|ref|YP_692233.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110646485|emb|CAL15961.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
           borkumensis SK2]
          Length = 261

 Score =  285 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 19/262 (7%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I++V+     NIG  ARAM    L+ LRLV P+  +PS +A + ++ A  V+++ 
Sbjct: 2   LENVRIVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQ-SYPSVEATARASGAGDVLEAA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNVGIIFGRE 128
           +V +++ EA+     +  T+AR R      L P++ A  L+           + ++FGRE
Sbjct: 61  QVCNSVDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQDTRIAVLFGRE 120

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS------------- 175
             GLTN+E+   N  +S P NP +  LN++ AV L+ +E     +               
Sbjct: 121 DRGLTNDELRRCNLHVSVPANPEYGVLNVASAVQLISYELRLALLGDDFELQESRSRREV 180

Query: 176 -SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
                +     PAT   +  FLD+LE  + + G+  P ++  +++  +  +F+R    + 
Sbjct: 181 MPLPEMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNP-QQPGQVMTRMRRLFMRARPDKM 239

Query: 235 EVFLLRGIVSTLDKFSRQSSRR 256
           E+ +LRG++  L+K  ++   R
Sbjct: 240 EMSILRGVLVALEKKMQRDEGR 261


>gi|332678594|gb|AEE87723.1| tRNA:Cm32/Um32 methyltransferase [Francisella cf. novicida Fx1]
          Length = 247

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKVATNILSKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + ++  S  K V E N 
Sbjct: 120 RERTGLLNEELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISDLKEVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+     K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMVQSGFLDK-NKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|329905921|ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547412|gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 251

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 7/235 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             +LV+     NIG  ARAM     T L LVNPR  D    ++A + ++ A  V+ + R+
Sbjct: 15  RFVLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVAFASGAQDVLANARI 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +++EA+ D ++  A +AR R     V  P++ A  +         V ++ G ER+GL 
Sbjct: 75  VGSIEEALVDCNYAAAVSARLREFSPPVNGPRKFADEVAGNAA--LRVALVLGNERFGLP 132

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPATKGE 191
           NE +   N +I+ P NP + SLN+ QAV ++ +EC   ++        V      A+  +
Sbjct: 133 NEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECRMAALGDDAIATEVGFHGDAASLTQ 192

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +     +LE +L    + +P +  KK++  L  +F R  L  EEV +LRGI   +
Sbjct: 193 VEGMYQHLEQALVAIDFLKP-DSPKKLMPRLKRLFARTGLETEEVNILRGIAKQI 246


>gi|34499100|ref|NP_903315.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34104951|gb|AAQ61307.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 244

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 137/248 (55%), Gaps = 5/248 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++L  P    NIG  ARAM    L++L LV P+  +PSE+A + ++ A  ++++ 
Sbjct: 1   MQNIRVVLARPNHPGNIGSAARAMKTMGLSRLYLVEPK-VFPSEEANALASGAVDLLENA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  +L+EA++D+    A T+R R     +  P++    L  R   G+ V ++FG E +G
Sbjct: 60  TVVGSLREALSDVTVACALTSRRRELTTPLSTPRQTTPELIARARDGEQVALVFGNETFG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+ EE+   N +++ P NP + SLN++ AV +M +E   ++ V  E  ++ +   AT+ E
Sbjct: 120 LSIEEVEQCNRLVTIPGNPDYFSLNLAMAVQVMTYELFSHTGVDVEY-LRAEGEAATQSE 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +     +LE +++E GYF+     ++++  + ++F R  ++REE+ +LRG    + + + 
Sbjct: 179 VDGMCGHLEQAMDEIGYFQ-RRNSERLMRRMRTMFHRAGMLREEIDILRGFYKQVQRTA- 236

Query: 252 QSSRRNNV 259
            S R  + 
Sbjct: 237 -SGRSGDA 243


>gi|152981160|ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281237|gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
          Length = 253

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 7/235 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             ILV+     NIG  ARA+ N   T+L LVNPR  D    E+A + ++ A  ++ + R+
Sbjct: 15  RFILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVAFASGAQDILQAARI 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +++EA+ D +F  A TAR R     V++P+  A  L E   +G    ++FG ER+GL 
Sbjct: 75  VGSIEEALIDCNFAAAVTARLREFSPPVISPRALATRLVEE--TGLRAAVVFGNERFGLP 132

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQNTPATKGE 191
           NE +   N +I+   NP + SLN++QAV ++ +E    ++    +  ++  Q   A+  +
Sbjct: 133 NEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEARMAAVGETRAATDIGFQGEAASMAQ 192

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +     +LE +L    +       KK++  L  +F R +L  EEV +LRGI   +
Sbjct: 193 IDGMYAHLEQALVAIDFLD-ANNPKKLMPRLKRLFSRTQLETEEVNILRGIAKQI 246


>gi|89094499|ref|ZP_01167438.1| putative tRNA/rRNA methyltransferase (trmH family protein)
           [Oceanospirillum sp. MED92]
 gi|89081235|gb|EAR60468.1| putative tRNA/rRNA methyltransferase (trmH family protein)
           [Oceanospirillum sp. MED92]
          Length = 241

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 132/245 (53%), Gaps = 6/245 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++L++     NIG  ARAM N  L++L LV P + +PSE+A S +A A  ++DS 
Sbjct: 2   LSNVRVVLINTFHPGNIGAAARAMKNMGLSKLYLVEPEE-FPSEEADSRAAGAKDLLDSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            V S L+EAI+D   +  T+AR  R     +L  ++ A  +     SG+ V ++FGRE  
Sbjct: 61  IVVSTLEEAISDCQLVIGTSARTKRTFDLPLLNARKGAERVVAEAQSGE-VALVFGRETM 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL N E+   N  +  P NP +P LN+SQA+ L+ +E   ++   +   V+E+       
Sbjct: 120 GLHNHELQQCNFHVYIPANPEYPVLNVSQAIQLLCYEIFMSAENKTYSEVEEEYPR--HK 177

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E+  F +++E  L    +  P + + K+L+ L+  F R    R E+ +LRGI++++++  
Sbjct: 178 EMALFYEHMEKVLRLTNFIIP-QHEGKVLEKLHRFFNRSRPERTELNMLRGILTSVEETV 236

Query: 251 RQSSR 255
            +  +
Sbjct: 237 EKLKK 241


>gi|254426790|ref|ZP_05040497.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
 gi|196192959|gb|EDX87918.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
          Length = 260

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 19/258 (7%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I++V+     NIG  ARAM    L+ LRLV P+  +PS +A + ++ A  V+++ 
Sbjct: 2   LENVRIVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQ-AYPSVEATARASGAGDVLEAA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNVGIIFGRE 128
           +V +++ EA+     +  T+AR R      L P++ A  L+           + ++FGRE
Sbjct: 61  QVCNSVDEALEGATLVIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQNTRIAVLFGRE 120

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS------------- 175
             GLTN+E+   N  +S P NP +  LN++ AV L+ +E     +               
Sbjct: 121 DRGLTNDELRRCNLHVSVPTNPEYGVLNVASAVQLISYELRLALLGDDFELQESRSRREV 180

Query: 176 -SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
                +     PAT   +  FLD+LE  + + G+  P E+  +++  +  +F+R    + 
Sbjct: 181 MPLPEMFWDEPPATNEAVSGFLDHLEKVMAQSGFLNP-EQPGQVMTRMRRLFMRARPDKM 239

Query: 235 EVFLLRGIVSTLDKFSRQ 252
           E+ +LRG++  L+K   +
Sbjct: 240 EMSILRGVLVALEKKMPR 257


>gi|39996575|ref|NP_952526.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983456|gb|AAR34849.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
           sulfurreducens PCA]
 gi|298505591|gb|ADI84314.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 255

 Score =  284 bits (728), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 123/247 (49%), Gaps = 5/247 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   I+LV+PQ   N+GMV RAM N  L +LR+V         +A   + +A  +++  R
Sbjct: 14  ERVAIVLVEPQSPGNVGMVCRAMKNMGLGELRIVK-GCRLDHPEALKFAVSARDLLERAR 72

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF +L++A++D     ATT R+    + + +PKE        +  G    ++FGRE  GL
Sbjct: 73  VFESLEDALSDTELSVATTRRHGKYRQEIFSPKEIVSKFAANLA-GNRAALVFGREDNGL 131

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           T +E++L     + P +  + SLN++QAV++  +E   +  + S     E    A   E 
Sbjct: 132 TTDELSLCRWHATIPSSEEYGSLNLAQAVMVFCYELFTS--LGSRTVGGEDRPLAGSAET 189

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
               +++E +L   GY  P +    ++  L  IF R EL   EV +LRG+++ +D  + Q
Sbjct: 190 EPLFEHMERTLMRIGYLNP-QNPAHLMRSLRRIFARSELDSREVAILRGMMTQIDWAADQ 248

Query: 253 SSRRNNV 259
              +   
Sbjct: 249 FKGKKGA 255


>gi|323494811|ref|ZP_08099909.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
 gi|323310951|gb|EGA64117.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
          Length = 241

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 116/239 (48%), Gaps = 5/239 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV      NIG  ARAM    L+ L LV+P+     E+A + +A A  +  S 
Sbjct: 2   LNNVKVVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSV-DEQAIALAAGAADIAQSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + + L EA+AD   +  ++AR+R     +L P+E              V ++FGRER G
Sbjct: 61  TIVNTLSEAVADCALVVGSSARSRTLEWPMLEPRECGEKFVAE-GQNSPVALVFGRERTG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           LTN+E+   +  +  P NP + SLN++ AV  + +E     +    S+    E+      
Sbjct: 120 LTNDELQTCHYHVCIPANPEYSSLNLAMAVQTLSYEVRMAYLQHEQSQYAKPEEAEYPRH 179

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            EL  F  +LE   ++  +    E+  K+++ L  +F R     +E+ +LRG+++ ++K
Sbjct: 180 KELELFFTHLEKVAKDTQFI-SEEQPGKVMNKLRRLFNRARPEAQELNILRGVLTAIEK 237


>gi|209542602|ref|YP_002274831.1| tRNA/rRNA methyltransferase SpoU [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530279|gb|ACI50216.1| tRNA/rRNA methyltransferase (SpoU) [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 258

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/244 (39%), Positives = 148/244 (60%), Gaps = 1/244 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
             PV+ILV PQ+ ENIG  ARAM N  L  LRLV PRDGWP E+A  S++ AD ++++  
Sbjct: 15  NSPVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAAT 74

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  ++ +AIADLH ++AT  R R+  K+VL  +  A  L +    G   G++FG ER GL
Sbjct: 75  VHDSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGL 134

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGE 191
            NE++A ++A+I +P+N  F SLN++QAV++M +E       +  +  +  +   ATKGE
Sbjct: 135 DNEDMARADALIRYPLNAAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGE 194

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L +F+ +L   L+E G+ R  +K+  M+ +L   F R E+  +E+  L G+V+ L +  R
Sbjct: 195 LDNFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRR 254

Query: 252 QSSR 255
              +
Sbjct: 255 ARGQ 258


>gi|254369607|ref|ZP_04985618.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022]
 gi|157122561|gb|EDO66696.1| rRNA methylase [Francisella tularensis subsp. holarctica FSC022]
          Length = 247

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLLIEPISKVATSILNKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL NEE+ +SN     P N  + SLN++QAV L+ +E  + +I  S  K V E N 
Sbjct: 120 RERTGLLNEELLMSNVHAYIPSNEEYTSLNLAQAVQLVAYEIYKQAIEISKLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|91976216|ref|YP_568875.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB5]
 gi|91682672|gb|ABE38974.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB5]
          Length = 397

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/254 (42%), Positives = 162/254 (63%), Gaps = 2/254 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
              GPV+ILV+PQLGENIGM ARAM NF L +LRLV PRDGWP+  A+ ++A AD +++ 
Sbjct: 14  DLAGPVVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNIAAQRAAAGADDILEQ 73

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +F  ++EA+AD   ++ATTAR  +  K V  P+ AA  +      G   GI+FGRER+
Sbjct: 74  AELFDTVREAVADCTLLFATTARAHDQAKPVRGPEAAAQEIVTATAGGATAGILFGRERY 133

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
           GL NEE+AL+N I++FPVNP F SLN++QAVLLM +E  +++   +    + E++ PA++
Sbjct: 134 GLQNEEVALANRIVTFPVNPAFASLNLAQAVLLMGYEWFKHATQGALPFAMPERSEPASQ 193

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++ +F D L   L+   + RP EK+  ML +L +IF R E  ++++  L G V  + + 
Sbjct: 194 HQMTAFFDNLVAELDRVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGAVMAIAE- 252

Query: 250 SRQSSRRNNVLLQK 263
            R+   +  VL  +
Sbjct: 253 GRKGPAKGGVLDGE 266


>gi|261867573|ref|YP_003255495.1| TrmH family RNA methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412905|gb|ACX82276.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 241

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 119/245 (48%), Gaps = 11/245 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            K   I+L++     NIG  ARAM    LT L LV P+     ++A + +A A+ V+ S 
Sbjct: 2   LKNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQSE-DDQAIALAAGAEDVVKSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +  +A+AD   +  T+AR R+   S++ P+E          +G  V I+FGRER G
Sbjct: 61  VTAESFSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYATNG-KVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-----QNTP 186
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +  +  +  +      N  
Sbjct: 120 LTNEELLKCHYHVTIPANPDYTSLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIY 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               EL  F  + E      G+     + + ++  L  ++ R  + + E+ +L G++S +
Sbjct: 180 PQMEELEYFFSHTEQLYRSVGFI----QNQGVMQRLRRLYNRAGIEKTELNILLGMLSAV 235

Query: 247 DKFSR 251
           +K  +
Sbjct: 236 EKKLK 240


>gi|37521709|ref|NP_925086.1| methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35212707|dbj|BAC90081.1| glr2140 [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 6/251 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV  Q   N+G +AR + NF+L++L LV P      E+AR  + +A  V+D  R+
Sbjct: 2   NVRIVLVATQGARNLGAIARVIKNFDLSELWLVAPECSPKDEEARHMAVHAADVLDQARI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++L +A+AD   +  TTAR R      L P E A  L            +FG E  GL+
Sbjct: 62  VASLSQALADCTRVAGTTARTRTVSDPPLLPAEGARWLR---ADKGTAAYVFGPEDRGLS 118

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEE+A     +  P    +PSLN++QAV +  +    +S       V +         L 
Sbjct: 119 NEELAHCQRTVQIPTGAAYPSLNLAQAVGICAYALFTDS--KPPSPVFQNEPMPEAEVLE 176

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
            F  +LE +L   GY +    ++K+ +    +F R  L  +EV LLRG++  +D  S Q+
Sbjct: 177 GFYGHLERTLLAIGYLQEHTAERKL-EKFRRLFNRAGLTAQEVALLRGVLRQIDWASTQN 235

Query: 254 SRRNNVLLQKT 264
             R   L   T
Sbjct: 236 PARQLPLTPDT 246


>gi|312796656|ref|YP_004029578.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
 gi|312168431|emb|CBW75434.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
          Length = 318

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 6/238 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDS 70
                +LV+P    N+G  ARA+     ++L LV PR         A++ ++ AD V+ +
Sbjct: 71  TSVRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRLEAVRTHPDAQAMASGADDVLAA 130

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V   L +A+A +H+  A TAR R      LAP+  A+       +  ++ ++FG ER 
Sbjct: 131 AHVVPTLADALAGVHWSVALTAREREWGPPTLAPRALALRARGLAAA-GDIALVFGNERT 189

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE--QNTPAT 188
           GL+N ++   N +   P NP + SLN++QAV ++ +E     + ++ +       +  A 
Sbjct: 190 GLSNADVERCNVLAHIPANPAYSSLNLAQAVQVLAYELRLALLDTAPQTPPAGVASPLAP 249

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             E+     +LE +L    +  P    KK++  L  +F R  L REEV ++RGI   +
Sbjct: 250 HDEIERMFVHLENALIALDFLDPAS-PKKLMPRLRRLFARAGLEREEVNIVRGIAKHI 306


>gi|254373233|ref|ZP_04988722.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570960|gb|EDN36614.1| rRNA methyltransferase [Francisella novicida GA99-3549]
          Length = 247

 Score =  283 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 134/245 (54%), Gaps = 7/245 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N      I+LV+P    N+G  ARAM N  LT L LVNP+ G   ++A + S +A  V
Sbjct: 1   MNNLFNNIRIVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPKKGI-DDEALALSCHATEV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFG 126
           +++  + +NL+EA+  + ++  T+AR R     +    + A  +  +I  S + + I+FG
Sbjct: 60  VNNATIVANLEEALEGVDYVVGTSARVRRVSLPIEPISKIATNILSKIQKSDEKIAILFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNT 185
           RER GL N E+ +SN     P N  + SLN++QAV L+ +E  + ++  S+ K V E N 
Sbjct: 120 RERTGLLNGELMMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQAVEISNLKQVPEYNH 179

Query: 186 P---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
               A+  EL     + E S+ + G+    +K   ++D +  +F R EL  +EV +LRG 
Sbjct: 180 LHKKASVKELQGLYQHFEDSMIKSGFLDK-DKPGHVMDKVRRLFQRSELESQEVNILRGF 238

Query: 243 VSTLD 247
           +++L+
Sbjct: 239 LTSLE 243


>gi|307729273|ref|YP_003906497.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1003]
 gi|307583808|gb|ADN57206.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1003]
          Length = 292

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 123/273 (45%), Gaps = 31/273 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSS 60
           P    L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 10  PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVANVQSDPEAIAM 69

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+    V   L +A++ +H+  A TAR R        P+ AA +  +    G+ 
Sbjct: 70  ASGADDVLACAHVVPTLADALSGVHWSVALTARQREYGPPQWTPRAAASLARDEALHGE- 128

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178
           + ++FG ER GL+NE++   +A+   P NP + SLN++QAV ++ +E   N + S E+  
Sbjct: 129 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMNYLTSGEEAH 188

Query: 179 -------------------------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVE 213
                                      +     A   E+ S   +LE +L    +  P  
Sbjct: 189 VHTHATASTSAGRAPHAPGAAPAGSAAEPAGPRAASDEIESMFAHLESALVALEFLDPA- 247

Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
             KK++  L  +F R  L REEV ++RGI   +
Sbjct: 248 NPKKLMSRLRRLFARSGLEREEVNIVRGIAKHI 280


>gi|213021906|ref|ZP_03336353.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 217

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 6/219 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E       E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
             +L  F  +LE +L   G+ R      ++++ L  +F 
Sbjct: 180 VDDLERFYGHLEQTLLSTGFIR-ENHPGQVMNKLRRLFT 217


>gi|189424323|ref|YP_001951500.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
 gi|189420582|gb|ACD94980.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
          Length = 245

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 126/243 (51%), Gaps = 8/243 (3%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  S  G  +ILV+PQ   NIGMV RAM N  L++LRLV         +A   + +A  +
Sbjct: 1   MPPSLTGLSVILVEPQFPGNIGMVCRAMKNMGLSRLRLVA-GCDHLHPEAFKFAVSARDL 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++   +F +L +A+AD+    ATT R+    + +L+P +AA  L   + +  +  ++FGR
Sbjct: 60  LEQAELFDSLADALADISVSVATTRRSGKYRQELLSPPQAAQAL---LQAPGSAALVFGR 116

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E  GL+  +++L     + P +  + SLN++QA L+  +E    +   +      + TPA
Sbjct: 117 EDHGLSTADLSLCTLQATIPSSSEYGSLNLAQAALIFCYELFGAATAETGSL---RRTPA 173

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
             GEL     ++E +L   G+  P +    ++  L  IF R  L   EV +LRG++S +D
Sbjct: 174 PSGELEPLFTHMEQTLLRIGHLNP-QNPGHIMRSLRRIFFRSGLDSREVAILRGMLSQID 232

Query: 248 KFS 250
             +
Sbjct: 233 WAA 235


>gi|293390584|ref|ZP_06634918.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951118|gb|EFE01237.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 246

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 11/242 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            K   I+L++     NIG  ARAM    LT L LV P+     E+A + +A A+ V+ S 
Sbjct: 2   LKNIRIVLIETSHSGNIGSAARAMKTMGLTDLVLVAPKQSV-DEQAIALAAGAEDVVKSA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +  +A+AD   +  T+AR R+   S++ P+E          +G  V I+FGRER G
Sbjct: 61  VTAESFSQAVADCSLVIGTSARLRHLQNSLIEPRECGKKAVAYATNG-KVAIVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-----QNTP 186
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +  +  +  +      N  
Sbjct: 120 LTNEELLKCHYHVTIPANPDYASLNLAMAVQLIAYEVRMAYLTQTIASPSQNIRNNANIY 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               EL  F  + E      G+     + + ++  L  ++ R  + + E+ +L G++S +
Sbjct: 180 PQMEELEYFFSHTEQLYRSVGFI----QNQGVMQRLRRLYNRAGIEKTELNILLGMLSAV 235

Query: 247 DK 248
           +K
Sbjct: 236 EK 237


>gi|170733439|ref|YP_001765386.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|169816681|gb|ACA91264.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           cenocepacia MC0-3]
          Length = 289

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSS 61
            +P           +LV+P    N+G  ARA+     ++L LV PR        +A + +
Sbjct: 32  SSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMA 91

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + AD V+ S  V   L EA++ +H+  A TAR R      LAP+ AA   + ++ +G ++
Sbjct: 92  SGADDVLASAHVVPTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGAG-DI 150

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSE 177
            ++FG ER GL NE +   +A+   P NP + SLN++QAV ++ +E      E +   S 
Sbjct: 151 ALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSA 210

Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
           +   E  T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV 
Sbjct: 211 QPQAEAGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVN 269

Query: 238 LLRGIVSTL 246
           +LRGI   +
Sbjct: 270 ILRGIAKHI 278


>gi|254225011|ref|ZP_04918625.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125622398|gb|EAZ50718.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 244

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 120/234 (51%), Gaps = 5/234 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + +++  
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIAL-NAQIYPT 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P+E    L        +V ++FGRER GLTNEE
Sbjct: 67  LEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEANQ-HSVAMVFGRERTGLTNEE 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV--SSEKNVKEQNTPATKGELLS 194
           + L +  +  P NP + SLN++ AV L+ +E     +    S ++   Q       EL  
Sbjct: 126 LQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAYLALQQSSQSSTLQEEYPRHQELER 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           F  +LE  + +  +    ++  ++++ L  +F       +E+ +LRGI++++ K
Sbjct: 186 FYAHLEQVIMQTEFI-SAQQPGQVMNKLRRMFTHARPEAQEINILRGILTSVQK 238


>gi|153869173|ref|ZP_01998846.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
 gi|152074284|gb|EDN71155.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
          Length = 241

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 10/245 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                IILV      NIG  ARAM    L+ LRLV P+  +PS +A + ++ AD ++ + 
Sbjct: 2   LDNIQIILVGITHPGNIGAAARAMKTMGLSHLRLVQPK-HFPSAEATARASGADDLLSNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +F N ++++ D H ++ T+ R R     VL P   A    E     + V ++FGRE+ G
Sbjct: 61  LLFDNFEDSLKDCHLVFGTSTRQRMIAWPVLTPIACAEKALE---CPKPVALVFGREQSG 117

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-----SSEKNVKEQNTP 186
           LTN+E+ L N ++  P N  F SLN++ AV ++ +E  + +        +         P
Sbjct: 118 LTNKELDLCNYLVQIPTNSEFNSLNVAAAVQILSYELRKTNEAFIIKNDTNALKNSLPAP 177

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+   +  F  +LE +L +  +  P +K K ++  L+ +F R +L+  EV +LRG+++  
Sbjct: 178 ASLQAMAQFYQHLEQTLIDIEFLDP-QKPKLLMRHLHRLFNRVQLLDSEVQILRGLLTAA 236

Query: 247 DKFSR 251
            K  +
Sbjct: 237 QKKGK 241


>gi|294677143|ref|YP_003577758.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
           1003]
 gi|294475963|gb|ADE85351.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
           1003]
          Length = 245

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 100/236 (42%), Positives = 138/236 (58%), Gaps = 2/236 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRV 73
           PV IL+ PQ+GENIG  ARAM NF L+ LRLV+PRDGWP+ KA + ++ A   V+D   V
Sbjct: 7   PVFILIRPQMGENIGAAARAMLNFALSTLRLVDPRDGWPNPKAVAMASGAAGKVLDHAGV 66

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F    EAIAD  F++ATTAR R   K +  P+ A      RI +GQ VG++FG ER GL 
Sbjct: 67  FPTTAEAIADCDFVFATTARGRELTKPIYTPEAAMAEARARIAAGQRVGVMFGPERTGLE 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGEL 192
           N++I  +NAII+ PVNP F SLN++QAVLL  +E       +   +        A   E+
Sbjct: 127 NDDIIRANAIITVPVNPEFFSLNLAQAVLLTAYEFARQGSEAPAIDPGLAGAEMANALEI 186

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               D+ E  L++ G+F P  K   M  +L +++ R  L R +V  L G++  L +
Sbjct: 187 EKLGDHYEERLDQAGFFFPAGKAPMMKRNLRNMWSRFGLTRADVQTLHGMLRQLLR 242


>gi|186476154|ref|YP_001857624.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184192613|gb|ACC70578.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phymatum
           STM815]
          Length = 276

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 13/257 (5%)

Query: 1   MTPYAPQLQNSAK------GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGW 52
           +T  +P   NS            +LV+P    N+G  ARA+     ++L LV+PR  D  
Sbjct: 10  LTSSSPASDNSGTIGGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVADVK 69

Query: 53  PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              +A + ++ AD V+ S  V   L +A++   +  A TAR R      LAP+ AA    
Sbjct: 70  NDPEAIAMASGADDVLASAHVVPTLADALSGASWSLALTARAREYGPPQLAPRAAATQAR 129

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E    G ++ ++FG ER GL+N+++   +A+   P NP + SLN+SQA+ ++ +E     
Sbjct: 130 EHAAHG-DIALVFGNERTGLSNDDVERCSALAHIPANPAYSSLNLSQAIQVLSYELRMAY 188

Query: 173 IVS---SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
           +V    ++         A   E+     +LE +L    +  P    KK++  L  +F R 
Sbjct: 189 LVEGDTADPASGSAGALAASDEIERMYVHLENALIALDFLDPG-NPKKLMSRLRRLFARS 247

Query: 230 ELMREEVFLLRGIVSTL 246
            L REEV ++RGI   +
Sbjct: 248 GLEREEVNIVRGIAKHI 264


>gi|226939275|ref|YP_002794346.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226714199|gb|ACO73337.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 268

 Score =  281 bits (721), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 137/261 (52%), Gaps = 6/261 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +T   P++ +  +   ++L  P L  NIG  ARAM    LT+L LVNPR  +P  +A + 
Sbjct: 9   LTMPKPEVPDFLRNVRVVLARPSLPANIGSAARAMKTMGLTRLYLVNPR-RFPDPEADTL 67

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  V+    V  +L EA+  +    A T+R R     + AP+ A   L +    GQ 
Sbjct: 68  ASGAVDVLQQAVVTGSLGEALDGVALACALTSRKREITTPLAAPRIACAELLDAARQGQQ 127

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++FG E +GL+ EE    N +++   NP + SLN++QAV +M +E     +     ++
Sbjct: 128 VALVFGNETFGLSIEEAGQCNRLVTIAGNPDYFSLNLAQAVQVMSYELFSQ-LDFPLDHL 186

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           + Q   A++ E+     +L+ +L   G+       ++++  L ++F R +L R+E+ +LR
Sbjct: 187 RFQTERASRDEVEGLYGHLDHTLSGIGF-YERRNSERLMRRLRTLFDRADLERQEIDILR 245

Query: 241 GIVSTLDKFS---RQSSRRNN 258
           GI+  +++ +      +RR++
Sbjct: 246 GILKQVERKTGLVPDPTRRDD 266


>gi|58040206|ref|YP_192170.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
 gi|58002620|gb|AAW61514.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
          Length = 264

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 147/241 (60%), Gaps = 1/241 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+ILV PQL ENIG  ARAM N  L  LR+V PRDGWP E+A  +S+ AD ++D+ +VF
Sbjct: 24  PVVILVRPQLAENIGTTARAMANGGLFHLRIVAPRDGWPQERAWYASSGADRILDAAQVF 83

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +A+ADLH I+AT  R R+  K V+  + AA  L      G   GI+FG ER GL N
Sbjct: 84  ETVDDAVADLHRIFATCPRPRHVIKPVMTARGAAAELRVASNRGLRTGILFGPERAGLDN 143

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNTPATKGELL 193
           E++A ++ ++ +P+NP F SLN++QAVL+M +E      ++  +  +  +   ATKGE+ 
Sbjct: 144 EDMARADTLVRYPLNPKFMSLNLAQAVLIMAYEWFLTEDMTPPRELMTNETHVATKGEMD 203

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +F+ +L   L+E  + R  +K+  M+ +L   F R E+  +E+  L G+VS L    R  
Sbjct: 204 NFMSHLIRDLDETNFLRNEQKRPGMVRNLRHFFTRGEVTEQELRTLHGVVSELSNARRNR 263

Query: 254 S 254
           S
Sbjct: 264 S 264


>gi|118594590|ref|ZP_01551937.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Methylophilales bacterium HTCC2181]
 gi|118440368|gb|EAV46995.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Methylophilales bacterium HTCC2181]
          Length = 246

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L     G NIG  ARAM    L+ L LV P+  +PS+ A + +A AD ++D   +  +
Sbjct: 13  VVLCRTSHGGNIGSSARAMKTMGLSNLYLVQPK-HFPSDDAYALAAGADDILDKAIIVGS 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D H     TAR R   +     +E+A  L   I   Q + ++FG E  GL+N+E
Sbjct: 72  LEDAIKDSHIAIGFTARRRELSQPHKNIRESAQNLIA-IAEDQKISLVFGNETNGLSNDE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPATKGELLS 194
           I     +     N  + SLN++QAV +   E       S +  +    +N      EL  
Sbjct: 131 IKHCQLLSFIDANKSYSSLNLAQAVQICCHELRVALDFSKDNAINRGTRNDFVPHSELNG 190

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           F  +LE  L + G+ R ++  ++++  L  +F R +L ++EV ++RGI + + K  +
Sbjct: 191 FFIHLESMLNDIGFLRKIQ-GERLMQRLRLLFNRTQLDQDEVNIMRGIFTEIQKKIK 246


>gi|75907629|ref|YP_321925.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75701354|gb|ABA21030.1| RNA methyltransferase TrmH, group 1 [Anabaena variabilis ATCC
           29413]
          Length = 243

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             G  ++LV+P    N+G +AR M NF L QL LVNP+    SE+A   + +A  +++S 
Sbjct: 3   LAGVRVVLVEPAGPLNVGAIARVMKNFGLAQLVLVNPQCDPLSEEAMRMAVHAKEILESA 62

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L EA+       ATT R+ +   ++  P+ A   L E     Q   +IFGRE  G
Sbjct: 63  ITVPTLPEALHGCVRAIATTGRDNDRGLTLETPRIALPWLLEETS--QPSALIFGREDRG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+  +   I  P +P + SLN++ AV +  +E  +N +   E     +   A+   
Sbjct: 121 LSNEELIYAQRFIRIPTSPDYLSLNLATAVGICCYELAQN-LTPPETQTISETEFASLEF 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           + ++   LE  L   GY  P     + ++    ++ R  L   EV +LRGI+  ++  
Sbjct: 180 MEAYYQQLESLLLRIGYLYPHTATSR-MEKFRQLYNRAYLQTHEVGMLRGILRQIEWA 236


>gi|78484960|ref|YP_390885.1| RNA methyltransferase TrmH, group 1 [Thiomicrospira crunogena
           XCL-2]
 gi|78363246|gb|ABB41211.1| RNA methyltransferase, TrmH family, group 1 [Thiomicrospira
           crunogena XCL-2]
          Length = 268

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 138/261 (52%), Gaps = 7/261 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           ++     I++V+     NIG VARAM N  L+QL LVNP+D +PS+ A + ++ A  V++
Sbjct: 9   SNLAKIKIVMVETSHPGNIGAVARAMKNMGLSQLVLVNPKD-FPSQVASARASGAADVLN 67

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFG 126
             +V   L++A+AD   +   +AR R      L  ++ A +  E +        V I+FG
Sbjct: 68  DAKVVETLEQAVADCKLVVGASARLRKVSWPQLDVRQTAELAMETVGQEDEDNQVAILFG 127

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNT 185
           RE  GL+N E+   + +   P NP + SLNI+ AV + V+E +  + + S    +  ++ 
Sbjct: 128 REDSGLSNAELDKCHYLAHIPTNPTYSSLNIAAAVQVFVYELLMATDIKSVHEAEGYRHK 187

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A+  ++  F D+L  +L++  +  P  K  + +  +  +F R +L  +E+ +LRG+++ 
Sbjct: 188 LASSDQMEGFYDHLYQALQDIEFLDP-TKNARFMRRMRRLFNRSQLDVKEIDILRGVLTA 246

Query: 246 LDKFSRQ-SSRRNNVLLQKTE 265
             + ++Q  + R    L K E
Sbjct: 247 AQRQTKQLDTYRQQASLSKEE 267


>gi|15839065|ref|NP_299753.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|9107672|gb|AAF85273.1|AE004055_11 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 281

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+++  V +
Sbjct: 37  RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 95

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNE
Sbjct: 96  VLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNE 155

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191
           E+ L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +
Sbjct: 156 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 215

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L       + +L+E  +       +  +  L  +F + EL ++E+ LLRG++S + +   
Sbjct: 216 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 274

Query: 252 QSSRRNN 258
              +R+ 
Sbjct: 275 LKRQRDT 281


>gi|260550634|ref|ZP_05824843.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260406345|gb|EEW99828.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 279

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +        I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  
Sbjct: 8   AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQD 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +++ V +   L++AI D H ++ T+AR+R     +L  + A+    +    GQ + I+FG
Sbjct: 67  LLEQVEIVETLEDAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAASQGQQIAIVFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177
           RE  GLTNEE+AL+N  ++ PVN  +  LN++QA+ ++ +E   + +   E         
Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKESVSDDGQMP 186

Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
               ++++      T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R
Sbjct: 187 LAQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245

Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNN 258
            E  LLRGI S +      K+ + SS + +
Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKED 275


>gi|33152694|ref|NP_874047.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33148918|gb|AAP96436.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 242

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +      IILV+  L  NIG  ARAM    L+ LRLV P+     E+A + +A A  ++D
Sbjct: 2   DRLNQIQIILVETSLSANIGSAARAMKTMGLSNLRLVRPK-NPLDEQATALAAGAKNILD 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + ++F+    AIAD   I  T+AR R+   +++ P+E   ++         + +IFGRER
Sbjct: 61  NAQIFNTFDAAIADCQLIIGTSARLRHLQSTLVEPRECGKLIINNTNQ-HKIALIFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV----KEQNT 185
            GLTNEE+   +  ++ P NP + SLN++ AV L  +E     +   +K +     E+  
Sbjct: 120 IGLTNEELLKCHYHLNVPTNPEYESLNLAMAVQLACYEIRMAWLELQKKPIIQPLTEEKN 179

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
             T   +  F D+ E   +E G+ R       ++  L  ++ R +L   E+ LLRG+++ 
Sbjct: 180 YPTAAAMAHFFDHTERLYKELGFIRN----DAVMLKLRRLYQRAKLEENELNLLRGMLTA 235

Query: 246 LDKFS 250
           ++K  
Sbjct: 236 VEKHR 240


>gi|119509165|ref|ZP_01628316.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
 gi|119466331|gb|EAW47217.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
          Length = 245

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 4/242 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+LV+P    N+G +AR M NF L  L LVNP+    +E+A   + +A  +++S  + +
Sbjct: 7   RIVLVEPAGPLNVGSIARVMKNFGLHNLVLVNPQCDPVAEEALKMAVHAKEILESAVLVT 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+       ATTAR R+    +  P+ A   L E     +   +IFGRE  GL+NE
Sbjct: 67  TLPEALQGCVRAIATTARVRDWETPLENPRTALPWLLE--SPSEPAALIFGREDRGLSNE 124

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  +   +  P +  + SLN++ AV +  +E                   A+   + ++
Sbjct: 125 ELNYAQRFVRIPSSENYSSLNLASAVGICCYEL-AQYTAPPTTPPPSPTELASLDIVETY 183

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
              LE  L + GY  P     + +     ++ R  L  +EV +LRGI+  ++   +    
Sbjct: 184 YQQLESLLLDIGYLYPHTATSR-MAKFRQLYNRAHLQTKEVAMLRGILRQIEWALKNQGN 242

Query: 256 RN 257
            N
Sbjct: 243 EN 244


>gi|83952097|ref|ZP_00960829.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
           nubinhibens ISM]
 gi|83837103|gb|EAP76400.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
           nubinhibens ISM]
          Length = 231

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 142/231 (61%), Gaps = 1/231 (0%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           +GENIG  ARAMWNF L ++RLV+PRDGWP+ KA + ++ A  ++D  ++  ++  A+AD
Sbjct: 1   MGENIGAAARAMWNFGLDRMRLVSPRDGWPNPKAVAMASGAGRLLDEAQLVEDVDAAVAD 60

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F++ATTAR+R   K V  P+ A  +  E+I  G+ V ++FG ER GL N+++A +NAI
Sbjct: 61  TSFVFATTARSREMTKPVYTPEAAMKLAAEKIAGGERVAVLFGPERAGLENDDVARANAI 120

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
           I+ PVNP F SLN++Q VLL+ +E M   S V+  +        A++ E+    ++ E  
Sbjct: 121 INVPVNPQFASLNLAQCVLLVGYEWMRQQSDVAPVQEGLGDTQWASRDEIAKLAEHYEER 180

Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +EE G+F P  K   M  +L + + R  L + ++ ++ G++  + ++  + 
Sbjct: 181 MEEAGFFFPEHKAANMRRNLRNFWSRMPLTQADIRMMHGVMRQMVRWKDRG 231


>gi|169633231|ref|YP_001706967.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|169152023|emb|CAP00898.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
          Length = 279

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +        I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  
Sbjct: 8   AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQD 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +++ V +   L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FG
Sbjct: 67  LLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177
           RE  GLTNEE+AL+N  ++ PVN  +  LN++QA+ ++ +E   + +   E         
Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMP 186

Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
               ++++      T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R
Sbjct: 187 LAQGQSMQWDEPLVTQQQMEEFYPHLEKVLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245

Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNN 258
            E  LLRGI S +      K+ + SS + +
Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKED 275


>gi|170694941|ref|ZP_02886090.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
           C4D1M]
 gi|170140039|gb|EDT08218.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
           C4D1M]
          Length = 378

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 33/286 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSS 60
           P    L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 97  PAVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAM 156

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ S  V   L +A++ +H+  A TAR R        P+ AA +  +    G+ 
Sbjct: 157 ASGADDVLASAHVVPTLADALSGVHWSIALTARQREYGPPQWTPRAAASLARDEALHGE- 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178
           + ++FG ER GL+NE++   +A+   P NP + SLN++QAV ++ +E     + S  +  
Sbjct: 216 IALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRMIYLTSGAEVN 275

Query: 179 ------------------------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
                                   + +     A   E+ S   +LE +L    +  P   
Sbjct: 276 ASASRAPQASTGSAASAASTAAAASAEPAGPRAASDEIESMFTHLESALVALEFLDPA-N 334

Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNVL 260
            KK++  L  +F R  L REEV ++RGI   +     ++ R+++  
Sbjct: 335 PKKLMSRLRRLFARSGLEREEVNIVRGIAKHI---LLKTGRKDDSA 377


>gi|307151216|ref|YP_003886600.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7822]
 gi|306981444|gb|ADN13325.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7822]
          Length = 256

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 128/248 (51%), Gaps = 5/248 (2%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + + +   IILV+P    N+G VAR M N  L +L LVNP+    S++AR  + +   ++
Sbjct: 3   KTALEEVRIILVEPAGALNVGSVARVMKNMGLKRLILVNPQCEPKSDEARRMAVHGQDIL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           + ++  ++L +A+       ATT R+R       +P+ A   L   +       IIFG E
Sbjct: 63  EQLQQVNSLPQALVGCQRAIATTGRSRTLPTHFESPRAALPWL---LTPHSTSAIIFGPE 119

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPA 187
             GL+N E+  +   +  P NP +PSLN++QAV +  +E  + ++ +S   ++  +   A
Sbjct: 120 DRGLSNSELNYAQRFVCIPANPDYPSLNLAQAVAICAYELRQAALTTSASELEVNSLETA 179

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T   L ++   LE  L + GY  P   + + ++ +  ++ +  L +EE+ +LRGIV  +D
Sbjct: 180 TLDALEAYYQDLETLLLKIGYLYPHTARAR-MEKIRRLYYKAHLHQEELAMLRGIVRQMD 238

Query: 248 KFSRQSSR 255
              +  S+
Sbjct: 239 WAMQHLSK 246


>gi|114327801|ref|YP_744958.1| rRNA methylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315975|gb|ABI62035.1| RRNA methylase, SpoU family [Granulibacter bethesdensis CGDNIH1]
          Length = 257

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/248 (39%), Positives = 152/248 (61%), Gaps = 1/248 (0%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            LQ     PVIILV PQL ENIG  ARAM N  L  LRLV+PRDGWP ++A  +++ AD 
Sbjct: 9   PLQPRDPSPVIILVRPQLAENIGSTARAMANCGLFHLRLVSPRDGWPQDRAWRTASGADN 68

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++DS+ V   +++A+ADLH ++AT  R R+  K+++  + AA  +      G   GI+FG
Sbjct: 69  ILDSLTVHETVEDAVADLHRVFATCPRPRHIVKTIMTARGAAADIVLACERGLKTGILFG 128

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-VKEQNT 185
            ER GL N+++A ++ ++ +P+NP F SLN+SQAV++M +E       +  +  +  ++ 
Sbjct: 129 PERAGLDNDDMACADTLVRYPLNPDFMSLNVSQAVMVMGYEWWMAQDATPSRQLMTNESH 188

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            ATKGEL +FL +L   L+E G+ R  +K+  M+ ++   F+R E+  +E+  L GIV  
Sbjct: 189 VATKGELNNFLRHLVRELDECGFLRNEQKRSGMIRNIRHFFLRGEVTEQELRTLHGIVHE 248

Query: 246 LDKFSRQS 253
           L +   + 
Sbjct: 249 LSRGRGRG 256


>gi|148260405|ref|YP_001234532.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
 gi|146402086|gb|ABQ30613.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
          Length = 257

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/252 (38%), Positives = 148/252 (58%), Gaps = 1/252 (0%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
                L      PVIILV PQL ENIG VARAM N  L  LRLV PRDGWP ++A  +++
Sbjct: 5   DEGADLAPIDPSPVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTAS 64

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  ++++  V   + +A+ DLH ++AT  R R+  K +L  + AA  L E    G   G
Sbjct: 65  GAYRILEAATVHDTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCG 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK- 181
           I+FG ER GL N++IA ++++I +P+NP F SLN++QAV++M +E       +  + ++ 
Sbjct: 125 ILFGPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRTLQT 184

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            +   ATKGEL +FL +L    +E G+ R  +K+  M+ ++   F R E+  +E+  L G
Sbjct: 185 HKTHVATKGELENFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHG 244

Query: 242 IVSTLDKFSRQS 253
           IV+ L +  R +
Sbjct: 245 IVTELARGRRGA 256


>gi|254447029|ref|ZP_05060496.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           HTCC5015]
 gi|198263168|gb|EDY87446.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 123/239 (51%), Gaps = 5/239 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +++V     ENIG VARAM N  L  L LV PRD WPS+ AR+ +A A  V+D++ +  
Sbjct: 2   RVVMVRTFQSENIGAVARAMKNMGLNDLVLVAPRD-WPSDVARNRAAGAVDVLDNIALAD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +++EAIAD H++ AT+AR R     +   +++      R   GQ V I+ G ER GL ++
Sbjct: 61  SVEEAIADCHWVVATSARRRGYEWPMSNARQSMSEAYRRSQEGQQVAILLGPERSGLDSD 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTPATKGEL 192
            + L +       NP +P LN++QA  ++ +E  + S    E        +        +
Sbjct: 121 SLRLCDQHCYISANPDYPVLNVAQAAQVLTYELYQASEAGGELPETPDSNRPRYPKHEAV 180

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             F  +LE +L   G+ RP      ++  L  +  + ++   E+ +LRGI+S +++  R
Sbjct: 181 EHFYQHLESALTHIGFLRPEHPGDTLV-KLRRLLTKAQIEDSELNMLRGILSAIERLER 238


>gi|198282955|ref|YP_002219276.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666933|ref|YP_002425158.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247476|gb|ACH83069.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519146|gb|ACK79732.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 256

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 7/255 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S +G  I+LV+P    NIG  ARAM    L  L LV+PR  +P  +A + ++ A+ +++S
Sbjct: 5   SLQGLRIVLVEPSHPGNIGAAARAMKVMGLRHLVLVSPR-FFPDPEATALASGAEDILES 63

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +V +NL  A+   H +Y T+AR R         +EAA  +   + +G +  ++FGRER 
Sbjct: 64  AQVCTNLDTALQGCHKVYGTSARGRRIQWPASNAREAAGEILADLDTG-DCALLFGRERT 122

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----P 186
           GLTN E+     ++  P    + SLN+ QAV ++ +E    ++ +              P
Sbjct: 123 GLTNAEMDRCQVLVHIPTADEYHSLNLGQAVQVLAYELHMAALTAQPAQDVPAEDVPEQP 182

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A   ++  F  +L+  L   G+ + +   + M      +F R    + EV +LRGI++ +
Sbjct: 183 APIEDMEGFYGHLQHVLRRSGFLQEIRATRMMRRL-RRLFDRARPSQNEVNILRGILTEI 241

Query: 247 DKFSRQSSRRNNVLL 261
           ++++ +  R++   L
Sbjct: 242 ERWASKVDRKDQDSL 256


>gi|322508137|gb|ADX03591.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           1656-2]
          Length = 271

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/271 (28%), Positives = 136/271 (50%), Gaps = 20/271 (7%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +        I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  +
Sbjct: 1   MSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQDL 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++ V +   L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FGR
Sbjct: 60  LEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGR 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---------- 177
           E  GLTNEE+AL+N  ++ PVN  +  LN++QA+ ++ +E   + +   E          
Sbjct: 120 EDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPL 179

Query: 178 ---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
              ++++      T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R 
Sbjct: 180 AQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRM 238

Query: 235 EVFLLRGIVSTLD-----KFSRQSSRRNNVL 260
           E  LLRGI S +      K+ + SS + +  
Sbjct: 239 EYHLLRGIFSRVQALTSGKWKKASSDKEDQP 269


>gi|255065931|ref|ZP_05317786.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
           29256]
 gi|255049842|gb|EET45306.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
           29256]
          Length = 271

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 21/273 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P+L +      IIL       NIG  ARAM    L +L +V              
Sbjct: 1   MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTGQPP 60

Query: 47  -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                NP+D    E++   ++ A  V+ +  + + L EA+AD     A T+R R     +
Sbjct: 61  VFNPENPQDFQLPEESFILASGAADVLHNAVIAATLDEALADTTLACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P+E    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRELVPELLQAAQRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    + +    ++++++  AT  ++   + ++E  +++ G+F      ++++  
Sbjct: 181 QVVCYEIFSQTDM-PMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           + S+F R     E++ +LRG  +T+    ++  
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRLKKKD 271


>gi|184157822|ref|YP_001846161.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|332874635|ref|ZP_08442526.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6014059]
 gi|183209416|gb|ACC56814.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|323517711|gb|ADX92092.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332737164|gb|EGJ68100.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6014059]
          Length = 279

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/272 (28%), Positives = 136/272 (50%), Gaps = 20/272 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +        I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  
Sbjct: 8   AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQD 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +++ V +   L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FG
Sbjct: 67  LLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177
           RE  GLTNEE+AL+N  ++ PVN  +  LN++QA+ ++ +E   + +   E         
Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMP 186

Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
               ++++      T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R
Sbjct: 187 LAQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245

Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNNVL 260
            E  LLRGI S +      K+ + SS + +  
Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKEDQP 277


>gi|326403597|ref|YP_004283679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
 gi|325050459|dbj|BAJ80797.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
          Length = 257

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/252 (38%), Positives = 148/252 (58%), Gaps = 1/252 (0%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
                L      PVIILV PQL ENIG VARAM N  L  LRLV PRDGWP ++A  +++
Sbjct: 5   DEGADLAPIDPSPVIILVRPQLAENIGSVARAMGNGGLFHLRLVAPRDGWPQDRAMRTAS 64

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  ++++  V   + +A+ DLH ++AT  R R+  K +L  + AA  L E    G   G
Sbjct: 65  GAYRILEAATVHDTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCG 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK- 181
           I+FG ER GL N++IA ++++I +P+NP F SLN++QAV++M +E       +  + ++ 
Sbjct: 125 ILFGPERAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYEWWIAGEAAPVRKLQT 184

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            +   ATKGEL +FL +L    +E G+ R  +K+  M+ ++   F R E+  +E+  L G
Sbjct: 185 HKTHVATKGELENFLTHLIAECDEAGFLRNEQKRPGMVRNIRHFFQRGEVTEQELRTLHG 244

Query: 242 IVSTLDKFSRQS 253
           IV+ L +  R +
Sbjct: 245 IVTELARGRRGA 256


>gi|17232034|ref|NP_488582.1| hypothetical protein alr4542 [Nostoc sp. PCC 7120]
 gi|17133678|dbj|BAB76241.1| alr4542 [Nostoc sp. PCC 7120]
          Length = 243

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 4/238 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             G  I+LV+P    N+G +AR M NF L  L LV+P+    SE A   + +A  +++S 
Sbjct: 3   LAGVRIVLVEPSGPLNVGAIARVMKNFGLAHLVLVSPQCDPLSEDAMRMAVHAKEILESA 62

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L  A+       AT+ R+ +   ++  P+ A   L E   +GQ   +IFGRE  G
Sbjct: 63  ITVPTLPAALHGCVRAIATSGRDNDWGLTLETPRIALPWLLEE--TGQPSALIFGREDRG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+  +   I  P +P + SLN++ AV +  +E  +N +   E     +   A    
Sbjct: 121 LSNEELIYAQRFIRIPTSPDYLSLNLASAVGICCYELAQN-LTPPETQTISETEFAPLEF 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           + ++   LE  L   GY  P     + ++    ++ R  L   EV +LRGI+  ++  
Sbjct: 180 VEAYYQQLESLLLRIGYLYPHTATSR-MEKFRQLYNRAYLQTHEVGMLRGILRQIEWA 236


>gi|71898718|ref|ZP_00680887.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|71731483|gb|EAO33545.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
          Length = 263

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+++  V +
Sbjct: 19  RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 77

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNE
Sbjct: 78  VLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNE 137

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191
           E+ L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +
Sbjct: 138 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 197

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L       + +L+E  +       +  +  L  +F + EL ++E+ LLRG++S + +   
Sbjct: 198 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 256

Query: 252 QSSRRNN 258
              +R+ 
Sbjct: 257 LKRQRDT 263


>gi|296158968|ref|ZP_06841796.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           Ch1-1]
 gi|295890843|gb|EFG70633.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           Ch1-1]
          Length = 278

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 19/271 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSS 61
              +L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + +
Sbjct: 11  AVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPQVQADPEAIAMA 70

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + AD V+ S  V   L +A++ +H+  A TAR R       AP+ AA V  E+   G+ +
Sbjct: 71  SGADDVLASAHVVPTLADALSGVHWSIALTARLREYGPPQWAPRAAAGVAREQAMHGE-I 129

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-------- 173
            ++FG ER GL+NE++   +A+   P NP + SLN++QAV ++ +E     +        
Sbjct: 130 ALVFGNERTGLSNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELRTTYLSADSATTA 189

Query: 174 -----VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228
                 ++    +     A   E+ S   +LE +L    +  P    KK++  L  +F R
Sbjct: 190 AHAAPRAAAGPAEPAGARAASDEIESMFMHLESALVALEFLDPA-NPKKLMSRLRRLFAR 248

Query: 229 PELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259
             L REEV ++RGI   +    +   +  + 
Sbjct: 249 SGLEREEVNIVRGIAKHI--LLKTGPKGGDA 277


>gi|169796249|ref|YP_001714042.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213157017|ref|YP_002319062.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii AB0057]
 gi|215483704|ref|YP_002325925.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB307-0294]
 gi|239504053|ref|ZP_04663363.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB900]
 gi|301347826|ref|ZP_07228567.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB056]
 gi|301511110|ref|ZP_07236347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB058]
 gi|301595111|ref|ZP_07240119.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB059]
 gi|332855453|ref|ZP_08435873.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013150]
 gi|332866041|ref|ZP_08436785.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013113]
 gi|169149176|emb|CAM87055.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|193077116|gb|ABO11892.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213056177|gb|ACJ41079.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii AB0057]
 gi|213987649|gb|ACJ57948.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB307-0294]
 gi|332727427|gb|EGJ58857.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013150]
 gi|332734861|gb|EGJ65952.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013113]
          Length = 279

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +        I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  
Sbjct: 8   AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-TYPHPDIQALAAGAQD 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +++ V +   L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FG
Sbjct: 67  LLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177
           RE  GLTNEE+AL+N  ++ PVN  +  LN++QA+ ++ +E   + +   E         
Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMP 186

Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
               ++++      T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R
Sbjct: 187 LAQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245

Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNN 258
            E  LLRGI S +      K+ + SS + +
Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKED 275


>gi|53719858|ref|YP_108844.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei K96243]
 gi|167816505|ref|ZP_02448185.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei 91]
 gi|217420642|ref|ZP_03452147.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 576]
 gi|52210272|emb|CAH36251.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei K96243]
 gi|217396054|gb|EEC36071.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 576]
          Length = 303

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ A     +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAVASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|254247820|ref|ZP_04941141.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
           PC184]
 gi|124872596|gb|EAY64312.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
           PC184]
          Length = 289

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 8/249 (3%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSS 61
            +P           +LV+P    N+G  ARA+     ++L LV PR        +A + +
Sbjct: 32  SSPPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMA 91

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + AD V+ S  V   L EA++ +H+  A TAR R      LAP+ AA   + ++ +G ++
Sbjct: 92  SGADDVLASAHVVPTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGTG-DI 150

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSE 177
            ++FG ER GL NE +   +A+   P NP + SLN++QAV ++ +E      E +   S 
Sbjct: 151 ALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSA 210

Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
           +   E  T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV 
Sbjct: 211 QPQAEVGTLAQSDEIERMYVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVN 269

Query: 238 LLRGIVSTL 246
           +LRGI   +
Sbjct: 270 ILRGIAKHI 278


>gi|260555311|ref|ZP_05827532.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260411853|gb|EEX05150.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 279

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +        I++V+  L  NIG   RAM    L++L LV+P+  +P    ++ +A A  
Sbjct: 8   AVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPK-MYPHPDIQALAAGAQD 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +++ V +   L+EAI D H ++ T+AR+R     +L  + A+    +    GQ + I+FG
Sbjct: 67  LLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--------- 177
           RE  GLTNEE+AL+N  ++ PVN  +  LN++QA+ ++ +E   + +   E         
Sbjct: 127 REDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMP 186

Query: 178 ----KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
               ++++      T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R
Sbjct: 187 LTQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDR 245

Query: 234 EEVFLLRGIVSTLD-----KFSRQSSRRNN 258
            E  LLRGI S +      K+ + SS + +
Sbjct: 246 MEYHLLRGIFSRVQALTSGKWKKASSDKED 275


>gi|118579084|ref|YP_900334.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118501794|gb|ABK98276.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter propionicus
           DSM 2379]
          Length = 251

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 5/238 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A    I++V+PQ   NIGMV RAM N  L++LRLV   D +   ++   + +A  +++  
Sbjct: 9   ADSVSIVMVEPQSPGNIGMVCRAMKNMGLSRLRLVKGCDRF-HPESLKFAVSAKDLLERA 67

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++ +L  A+AD      TT R+    + +L+P + A +L  R        ++FGRE  G
Sbjct: 68  ELYDDLASALADCALTVGTTRRHGKYRQEILSPPQVATLLRTRAQGDCRGALVFGREDSG 127

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LT +E++L     + P +  + SLN+SQAVLL  +E  + S             PAT  E
Sbjct: 128 LTTDELSLCRWHATIPTSSEYGSLNLSQAVLLFCYELGKASDSPGG---GRTEIPATSAE 184

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           + +    ++ SL+  G+    +    ++  L  I  R EL   E+ +LRG+ S +D  
Sbjct: 185 METLFSQMDTSLQRIGFLN-EQNPGHIMRSLRRILFRSELDNRELAILRGMFSQVDWA 241


>gi|295676879|ref|YP_003605403.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1002]
 gi|295436722|gb|ADG15892.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1002]
          Length = 276

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 125/261 (47%), Gaps = 19/261 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSS 60
           P    L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 10  PTVADLRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAM 69

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ SV V  +L +A+A +H+  A TAR R        P+ AA   +     G+ 
Sbjct: 70  ASGADDVLASVHVVPSLADALAGVHWSIALTARLREYGPPQWTPRAAAAAAHAEALHGE- 128

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI------- 173
           + ++FG ER GL+NE++   +AI   P NP + SLN++QAV ++ +E     +       
Sbjct: 129 IALVFGNERTGLSNEDVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRTAYLGTDQTTD 188

Query: 174 --------VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
                   ++  ++   +   A   E+ S   +LE +L    +  P    KK++  L  +
Sbjct: 189 GAPAPGARIAPAESAGTRAQMAASDEIESMFVHLESALVALEFLDP-SNPKKLMSRLRRL 247

Query: 226 FIRPELMREEVFLLRGIVSTL 246
           F R  L REEV ++RGI   +
Sbjct: 248 FARSGLEREEVNIVRGIAKHI 268


>gi|83858779|ref|ZP_00952301.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853602|gb|EAP91454.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 247

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/232 (41%), Positives = 142/232 (61%), Gaps = 3/232 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV ILV+PQ+GENIG   R M NF + +LR+VNPRDGWP+ KA S +  +  V+D  RVF
Sbjct: 7   PVFILVEPQMGENIGAACRVMGNFGIPELRIVNPRDGWPNPKAVSMAT-SSPVLDDARVF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+EA+AD   ++A+TA+ RN  K V   +E    +   + +GQ VG++FG E+ GL N
Sbjct: 66  DTLEEAVADCQLLFASTAQPRNMVKPVFTAREGMAEIRGHVEAGQRVGVLFGAEKSGLPN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
             I LSNAII+ PV+  F SLN++ AV +   E    +   + ++ K  +  AT+ E+ +
Sbjct: 126 AAITLSNAIITLPVDRSFSSLNLAMAVGVFAHEWR--AGEPTPEDFKPLDDRATEQEMTA 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           F  +LE  L+  G+F P EK   M+ +L + F R  L ++EV  LRG++  L
Sbjct: 184 FYAHLEQELDRAGFFYPPEKTPLMMQNLINAFARGGLTQQEVRTLRGVIKAL 235


>gi|284054898|ref|ZP_06385108.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
 gi|291566347|dbj|BAI88619.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 255

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 124/246 (50%), Gaps = 11/246 (4%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + +     I+LV+P    N+G +AR M N  LTQ+ LV+P     S +A++ + +A  V+
Sbjct: 7   ETALTTIRIVLVEPAGALNVGSIARVMKNMGLTQMVLVSPHCDPMSCEAKTMAVHAQDVL 66

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +S ++  +L +A+       ATTAR+R+  +++  P+     L +         +IFG E
Sbjct: 67  ESAQIVDSLPQALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLQS-----PAALIFGPE 121

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNT 185
             GL+N E+  +  I+  P +  + SLN++QAV +  +E   ++   I SS     E + 
Sbjct: 122 DRGLSNTELNYAQRIVRIPSSSAYESLNLAQAVAVCCYELSLSAQTLIDSSTLPTPEPSE 181

Query: 186 P--ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           P  AT  +L  +   LE  L + GY  P     + ++    +F R +    EV +LRG++
Sbjct: 182 PLSATLDQLEGYYQQLETLLLKIGYVYPHTVSSR-MEKFRHLFNRAQPSSTEVAMLRGVI 240

Query: 244 STLDKF 249
           S ++  
Sbjct: 241 SQVEWA 246


>gi|182682100|ref|YP_001830260.1| RNA methyltransferase [Xylella fastidiosa M23]
 gi|182632210|gb|ACB92986.1| RNA methyltransferase, TrmH family, group 1 [Xylella fastidiosa
           M23]
 gi|307578367|gb|ADN62336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 263

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+++  V +
Sbjct: 19  RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 77

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNE
Sbjct: 78  VLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNE 137

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191
           E+ L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +
Sbjct: 138 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 197

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L       + +L+E  +       +  +  L  +F + EL ++E+ LLRG++S + +   
Sbjct: 198 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 256

Query: 252 QSSRRNN 258
              +R+ 
Sbjct: 257 LKRQRDT 263


>gi|255020949|ref|ZP_05293005.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969740|gb|EET27246.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
           51756]
          Length = 263

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 127/250 (50%), Gaps = 10/250 (4%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P AP L+       I+LV+     NIG  ARAM    L +L LV P   +P  +A + +
Sbjct: 15  APLAPDLR-------IVLVETSHPGNIGSAARAMKVMGLERLVLVRPH-RFPDAQATALA 66

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A+ +++   V+ +L  A+AD   +Y TTAR+R+     L  + AA  +   + +   V
Sbjct: 67  SGAEDLLERAEVYDDLAAALADCRRVYGTTARDRHIAWPQLTARPAAAEIVA-LGASAPV 125

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            I+FG ER GL+N E+ L   +I  P    + SLN++QAV ++ +E +     +      
Sbjct: 126 AILFGNERVGLSNRELDLCQCLIQIPTAEAYRSLNLAQAVQILAYELLLAQRETRHPAPS 185

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
              T A +  +  F  +L   L + G+ +   ++  M+  L  +F R      EV++LRG
Sbjct: 186 VLETAAPRAAMEGFYGHLAQVLRQAGFLQAP-RETHMMRRLRRLFDRARPDLNEVYILRG 244

Query: 242 IVSTLDKFSR 251
           I++ ++++++
Sbjct: 245 ILTEVERWAQ 254


>gi|209518051|ref|ZP_03266882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
 gi|209501555|gb|EEA01580.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
          Length = 276

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 123/261 (47%), Gaps = 19/261 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSS 60
           P   +L+        +LV+P    N+G  ARA+     ++L LV+PR        +A + 
Sbjct: 10  PAVAELRGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAM 69

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ AD V+ SV V   L +A+  +H+  A TAR R        P+ AA V +E    G+ 
Sbjct: 70  ASGADDVLASVHVVPTLADALTGVHWSVALTARLREYGPPQWTPRAAAAVAHEEAVHGE- 128

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI------- 173
           + ++FG ER GL+NE++   +AI   P NP + SLN+ QAV ++ +E     +       
Sbjct: 129 IALVFGNERVGLSNEDVERCSAIAHIPANPAYSSLNLGQAVQVLAYELRTAYLCDDETTD 188

Query: 174 --------VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
                       ++   +   A   E+ S   +LE +L    +  P    KK++  L  +
Sbjct: 189 GAPALRAGAGQAESTGTRAQMAASDEIESMFAHLESALVALEFLDPA-NPKKLMSRLRRL 247

Query: 226 FIRPELMREEVFLLRGIVSTL 246
           F R  L REEV ++RGI   +
Sbjct: 248 FARSGLEREEVNIVRGIAKHI 268


>gi|261363634|ref|ZP_05976517.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
           25996]
 gi|288568164|gb|EFC89724.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
           25996]
          Length = 271

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 21/273 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           MT   P+L +      IIL       NIG  ARAM    L +L +V              
Sbjct: 1   MTSAKPELPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMSTPMTEQPP 60

Query: 47  -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                NP+D    E++   ++ A  V+ +  + + L EA+AD     A T+R R     +
Sbjct: 61  VFNPENPQDFQLPEESFILASGAADVLHNAVIAATLDEALADTTLACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P+E    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRELVPELLQAAQRGEQVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    + +    ++++++  AT  ++   + ++E  +++ G+F      ++++  
Sbjct: 181 QVVCYEIFSQTDM-PMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           + S+F R     E++ +LRG  +T+    ++  
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRLKKKD 271


>gi|85373954|ref|YP_458016.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84787037|gb|ABC63219.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 384

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 145/239 (60%), Gaps = 4/239 (1%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           + P I+LV PQLGENIG  ARAM NF LT+LRLV PRDGWP+  A  S+A AD V++  +
Sbjct: 137 QKPAIVLVRPQLGENIGNAARAMRNFGLTELRLVAPRDGWPNPDAGPSAAGADDVLERAQ 196

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF+   EA+AD   IYATT R R   K V+ P+EAA  ++ +        ++FG ER GL
Sbjct: 197 VFATTAEAVADCAHIYATTVRKRGVTKPVVTPEEAAQAIHSQA---GKSAVLFGPERSGL 253

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
             E++AL+ AI++ P++P F SLN++QAV+L  +E  + + +      ++   PA + EL
Sbjct: 254 ETEDVALARAILTVPIDPEFGSLNLAQAVILCAYEWSKGAELEQPTQ-EDLLPPAPQAEL 312

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
              + +LE  L+ +GYF P  + +     L ++  +P     E+  LRG++S+L +  +
Sbjct: 313 DDLIAHLEAMLQPKGYFLPANRTEATRRTLRTVLTKPGWNHLEIRTLRGVLSSLQRGDK 371


>gi|71281163|ref|YP_267872.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71146903|gb|AAZ27376.1| RNA methyltransferase, TrmH family, group 1 [Colwellia
           psychrerythraea 34H]
          Length = 273

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 19/254 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+     NIG  ARAM    L+QL LV+P +  P+ +A++ +A A  V+ + +V S 
Sbjct: 23  IVLVNTSDCRNIGSAARAMKTMGLSQLILVDPIEM-PNGQAQAMAAGATDVLANAKVVST 81

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAI D   +  T+AR+R     +L P+     +         V ++FGRE  GLTNEE
Sbjct: 82  LAEAIEDCGLVVGTSARSRTLPWPMLEPRGCGEKMIAEADE-YPVALVFGRENSGLTNEE 140

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT----------- 185
           + L +  +  P NP + SLN++ AV  + +E   + +++ ++N +E++T           
Sbjct: 141 LQLCHFHVQIPANPEYSSLNLAMAVQTLSYEVRTSYLLAHDQNYQERSTGNGNSIAKTKN 200

Query: 186 -----PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
                     E   F  + E +L+  G+         ++  L  +F R     +E+ ++R
Sbjct: 201 EDDELYPVIEETERFYQHFEKALKATGFIV-ENHPGLVMTKLRRLFNRARPDVKEIKMMR 259

Query: 241 GIVSTLDKFSRQSS 254
           GI +++++ S++ S
Sbjct: 260 GIFASMERSSKEKS 273


>gi|71276243|ref|ZP_00652522.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
 gi|71900996|ref|ZP_00683108.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|170730741|ref|YP_001776174.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
 gi|71163004|gb|EAO12727.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
 gi|71729247|gb|EAO31366.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|167965534|gb|ACA12544.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
          Length = 263

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+++  V +
Sbjct: 19  RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 77

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNE
Sbjct: 78  VLADAVADCTFVLGCTARARRVAFEELRPAAAASQILANINAAGEVALLFGRERTGLTNE 137

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191
           E+ L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +
Sbjct: 138 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 197

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L       + +L+E  +       +  +  L  +F + EL ++E+ LLRG++S + +   
Sbjct: 198 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 256

Query: 252 QSSRRNN 258
              +R+ 
Sbjct: 257 LKRQRDT 263


>gi|145636352|ref|ZP_01792021.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittHH]
 gi|145270517|gb|EDK10451.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittHH]
          Length = 241

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 131/241 (54%), Gaps = 14/241 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 60  RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  +L  F DY E   +  G+ R     + ++  L  ++ R +L + E+ +L G++S ++
Sbjct: 176 TTDQLAYFFDYTERIYQSLGFIRN----QGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231

Query: 248 K 248
           K
Sbjct: 232 K 232


>gi|148827519|ref|YP_001292272.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
 gi|260580557|ref|ZP_05848385.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260582528|ref|ZP_05850318.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
 gi|319775753|ref|YP_004138241.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3047]
 gi|319896709|ref|YP_004134902.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|329123594|ref|ZP_08252154.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           aegyptius ATCC 11116]
 gi|20178339|sp|P44676|Y380_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0380
 gi|5853047|gb|AAD54289.1| HI0380 [Haemophilus influenzae]
 gi|148718761|gb|ABQ99888.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
 gi|260092899|gb|EEW76834.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260094339|gb|EEW78237.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
 gi|317432211|emb|CBY80563.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3031]
 gi|317450344|emb|CBY86560.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3047]
 gi|327469793|gb|EGF15258.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           aegyptius ATCC 11116]
          Length = 241

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 60  RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++
Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231

Query: 248 K 248
           K
Sbjct: 232 K 232


>gi|53803244|ref|YP_115015.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757005|gb|AAU91296.1| RNA methyltransferase, TrmH family, group 1 [Methylococcus
           capsulatus str. Bath]
          Length = 247

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 4/233 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV+     NIG VARAM N  L+ L LV+P+  +PSE+A + ++ AD ++ + R+F
Sbjct: 5   IRIVLVETTHPGNIGGVARAMKNMGLSDLALVSPK-IFPSEQATARASGADDLLAAARLF 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +LK+AIAD   +   +AR R      L P+ AA  +   +  G    I+FGRE  GLTN
Sbjct: 64  GSLKDAIADCQLVIGASARLRTIAWPELDPRTAAAEIAG-LPEGTRSAIVFGREHSGLTN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            E+   + ++    NP F SLN++ AV ++ +E    +      + +     A   ++ S
Sbjct: 123 GELEQCHFLLHIASNPEFSSLNLACAVQVVAYELYLAA--GQGGSGRRSPPLADGEQMAS 180

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           F D+LE +L +  +         ++  L  IF    +  +E+ LLRGI++   
Sbjct: 181 FFDHLERTLYDIRFLHARRSSPSIMRRLRRIFNSARIEAQEIHLLRGILTAAQ 233


>gi|68248983|ref|YP_248095.1| tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP]
 gi|145631835|ref|ZP_01787594.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|145632627|ref|ZP_01788361.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           3655]
 gi|229844532|ref|ZP_04464672.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|229846467|ref|ZP_04466575.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|68057182|gb|AAX87435.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|144982554|gb|EDJ90108.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|144986822|gb|EDJ93374.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           3655]
 gi|229810560|gb|EEP46278.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|229812781|gb|EEP48470.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|309972461|gb|ADO95662.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2846]
          Length = 241

 Score =  278 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 60  RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++
Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231

Query: 248 K 248
           K
Sbjct: 232 K 232


>gi|145638711|ref|ZP_01794320.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittII]
 gi|145272306|gb|EDK12214.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittII]
 gi|309750201|gb|ADO80185.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2866]
          Length = 241

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 60  RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E++ P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKSYP- 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++
Sbjct: 176 TVDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231

Query: 248 K 248
           K
Sbjct: 232 K 232


>gi|301169082|emb|CBW28679.1| predicted methyltransferase [Haemophilus influenzae 10810]
          Length = 241

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 130/241 (53%), Gaps = 14/241 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LDNIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 60  RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++
Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231

Query: 248 K 248
           K
Sbjct: 232 K 232


>gi|145634624|ref|ZP_01790333.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittAA]
 gi|145268169|gb|EDK08164.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittAA]
          Length = 241

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 60  RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++
Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231

Query: 248 K 248
           K
Sbjct: 232 K 232


>gi|294339583|emb|CAZ87942.1| putative RNA methyltransferase TrmH, group 1 [Thiomonas sp. 3As]
          Length = 260

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 3/252 (1%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSS 61
            A     S    V +LV      N+G  ARA+ N     LRLV PR  D     +  + +
Sbjct: 10  EAAACAPSLDDTVFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFA 69

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A+ V+ + +V   L +A+AD   + A +AR R+    +  P+    +       G+ V
Sbjct: 70  SGAEDVLKTAQVHGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRV 129

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             +FG ER+GL+N ++   +A++S P NP + SLN++QAV ++ WE  +   + + +  +
Sbjct: 130 AFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKEVGLHAVQPAQ 189

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            ++  AT GE+   L ++E +L       P    +K+L  L  +  R EL R+EV +LRG
Sbjct: 190 TESVAATAGEVQGMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRG 248

Query: 242 IVSTLDKFSRQS 253
           + + + +   + 
Sbjct: 249 VCTAVLRKVPKG 260


>gi|22299659|ref|NP_682906.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295843|dbj|BAC09668.1| tll2116 [Thermosynechococcus elongatus BP-1]
          Length = 250

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 122/246 (49%), Gaps = 8/246 (3%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           ++     I+LV+PQ   NIG VAR M N  L QL +V+PR     E A+  + +A+ V+ 
Sbjct: 2   DTLPAVRIVLVEPQGEINIGSVARVMKNMGLQQLWMVSPRCDPKGELAQRWAVHAEDVLQ 61

Query: 70  SVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              V  +L+ A+AD   ++AT  R+  +       P++AA  L   + S     ++FGRE
Sbjct: 62  QANVTDSLEAALADCQRVFATVGRDVADLALPCWTPRQAAPQLLAVVQS----ALVFGRE 117

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GLTN E+  ++ ++  P    +PSLN++QAV +  +E    +  S E   +    P  
Sbjct: 118 DRGLTNAELECAHGLVKIPTANTYPSLNLAQAVAVCCYELWLTACDSGETFPQGDAVP-- 175

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L  F D+LE  L + G+  P     + +  + S+  R      EV LLRG+V  ++ 
Sbjct: 176 FERLQGFYDHLEQVLLQIGFLYPHTAASR-MAKVRSLLGRAYPTEAEVALLRGMVRQVEW 234

Query: 249 FSRQSS 254
             + ++
Sbjct: 235 AIQHAA 240


>gi|28199373|ref|NP_779687.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|28057479|gb|AAO29336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
          Length = 252

 Score =  278 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 6/247 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+++  V +
Sbjct: 8   RFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPECQ-LDEHAYRRSAGAEDVLEAASVHT 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD  F+   TAR R      L P  AA  +   I +   V ++FGRER GLTNE
Sbjct: 67  VLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGLTNE 126

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE----QNTPATKGE 191
           E+ L +  +  P +PLF SLN++ AV ++ +E    S+ +    +      + TPA+  +
Sbjct: 127 ELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIRLASLDAPSAPLHSTSGFRKTPASHAQ 186

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L       + +L+E  +       +  +  L  +F + EL ++E+ LLRG++S + +   
Sbjct: 187 LEGLFGQFKQTLDEIDF-HKGRAPESAMRKLRRLFAKAELTQQEIRLLRGVLSDVQRIVM 245

Query: 252 QSSRRNN 258
              +R+ 
Sbjct: 246 LKRQRDT 252


>gi|296135475|ref|YP_003642717.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
           K12]
 gi|295795597|gb|ADG30387.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
           K12]
          Length = 260

 Score =  278 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 126/252 (50%), Gaps = 3/252 (1%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSS 61
            A     S    V +LV      N+G  ARA+ N     LRLV PR  D     +  + +
Sbjct: 10  EAAACAPSLDDTVFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLTQPETLAFA 69

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A+ V+ + +V   L +A+AD   + A +AR R+    +  P+    +       G+ V
Sbjct: 70  SGAEDVLKTAQVHGELGDAVADCGVVVALSARVRDFGPPLHTPEWLPQLAQRSAEQGRRV 129

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             +FG ER+GL+N ++   +A++S P NP + SLN++QAV ++ WE  +   + + +  +
Sbjct: 130 AFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWRKGIGLHAVRPAQ 189

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            ++  AT GE+   L ++E +L       P    +K+L  L  +  R EL R+EV +LRG
Sbjct: 190 AESVAATAGEVQGMLAHVEQALLALEVLDP-NAPRKLLPRLQRLASRAELTRDEVQILRG 248

Query: 242 IVSTLDKFSRQS 253
           + + + +   + 
Sbjct: 249 VCTAVLRKVPKG 260


>gi|160871876|ref|ZP_02062008.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
 gi|159120675|gb|EDP46013.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
          Length = 239

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 7/239 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
                 I+LV      NIG  ARAM    L QL LV P+  +P   A   +++A  ++  
Sbjct: 2   PLSQLRIVLVKTTCPGNIGATARAMKTMGLKQLYLVAPQ-SFPHINASVRASHAIDILAD 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V   L+EA+ D   ++ T+ R R      L P+ AA  +       Q + I+FG+ER 
Sbjct: 61  AIVVDQLEEALGDCQLVFGTSTRVREFNWVSLTPRVAAEKIMNHCQ--QKIAILFGQERC 118

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATK 189
           GLTN+E+   +  ++ P NP + SLN++ AV ++ +E     +   EKN+K++  P A  
Sbjct: 119 GLTNKELQRCHFQMTIPANPEYNSLNLAAAVQIVCYELRNAFL--QEKNIKKRTVPLADV 176

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            +   F   L+  L++  + +P  + + ++D L  IF R EL  +E+ +L+GI S L+K
Sbjct: 177 KQHDYFYGQLQKRLKKIEFLKP-NRSQHVMDKLRRIFSRAELDSDEIKILQGIFSALEK 234


>gi|257060219|ref|YP_003138107.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8802]
 gi|256590385|gb|ACV01272.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8802]
          Length = 243

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 115/237 (48%), Gaps = 5/237 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S     IILV+P    N+G VAR M N  L +L LVNP+    SE+A+  + +   V++ 
Sbjct: 2   SLTQVRIILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQ 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +  S+L EA+       ATT R R +  S+  PK A   L   +       +IFG E  
Sbjct: 62  AQRVSSLPEALQGCQRAIATTGRPRTST-SLETPKNALPWL---LTPHLTSALIFGPEDR 117

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+NEE+  +   +  P N  +PSLN++Q+V +  +E  + +             PA+  
Sbjct: 118 GLSNEELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPHNVPPYPATEPASLD 177

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            L  +  +LE  L + GY  P     K ++    ++ R  L  EEV LLRGIV  +D
Sbjct: 178 ILEGYYQHLESFLLKIGYLHPHTATAK-MEKFRKLYNRANLSAEEVALLRGIVGHID 233


>gi|332185344|ref|ZP_08387092.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
 gi|332014322|gb|EGI56379.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
          Length = 243

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/244 (37%), Positives = 144/244 (59%), Gaps = 3/244 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  ++ PVI+LV PQLGENIG  ARAM NF L ++RLV PRDGWP+ +A  +++ AD V+
Sbjct: 3   QPPSQPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVTPRDGWPNPQAGPAASGADIVL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +V+ ++ +A+AD   +YATT R R   K V+ P+EAA  +     +      +FG E
Sbjct: 63  EQAKVYESVADAVADCAQVYATTVRKRGVTKPVVTPEEAAREI--HADTVGRAAFLFGPE 120

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           R GL  +++A++  I++ P+NP F SLN++QAV+L+ +E  +   ++      E    A 
Sbjct: 121 RSGLETDDVAIARKIVTVPINPEFGSLNLAQAVILIAYEWSKGVDLAQPPET-ELPPVAP 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + EL   +  LE  L+  GYF P ++       L ++  +P    +EV  LRG++STL +
Sbjct: 180 QFELDGMIGQLEEMLDGAGYFFPPDRTPATKRTLRTLLTKPGWSSQEVRTLRGVLSTLAR 239

Query: 249 FSRQ 252
              +
Sbjct: 240 PRER 243


>gi|218247147|ref|YP_002372518.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|218167625|gb|ACK66362.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8801]
          Length = 243

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 115/237 (48%), Gaps = 5/237 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S     IILV+P    N+G VAR M N  L +L LVNP+    SE+A+  + +   V++ 
Sbjct: 2   SLTQVRIILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQ 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +  S+L EA+       ATT R R +  S+  PK A   L   +       +IFG E  
Sbjct: 62  AQRVSSLPEALQGCQRAIATTGRPRTST-SLETPKNALPWL---LTPHLTSALIFGPEDR 117

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+NEE+  +   +  P N  +PSLN++Q+V +  +E  + +             PA+  
Sbjct: 118 GLSNEELNYAQRFVCIPSNSEYPSLNLAQSVAVCTYELYQAAQNPQNVPPYPATEPASLD 177

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            L  +  +LE  L + GY  P     K ++    ++ R  L  EEV LLRGIV  +D
Sbjct: 178 ILEGYYQHLETFLLKIGYLHPHTATAK-MEKFRKLYNRANLSAEEVALLRGIVGHID 233


>gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
 gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
          Length = 241

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 4/235 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              IIL       NIG  ARAM    L+ L L+NP+  +P ++A   + +A  +++ +RV
Sbjct: 9   NIRIILSHTSHPGNIGAAARAMKTMGLSSLYLINPK-TFPDKEADVRAVSARDILEKIRV 67

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + L EA+ +     A TAR R+    V   ++ A  L  R      V ++FG E  GLT
Sbjct: 68  CTTLDEALDNTVLTAAMTARPRDLSHDVFNARQGARELL-RYARQHPVALLFGTETSGLT 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
             E++    II  P NP F SLN++ AV +M +E     ++ +++ V     PA+  EL 
Sbjct: 127 TAEVSKCQMIIHIPANPEFTSLNLASAVQVMTYELRMA-LIENDEPVPLAGFPASFNELE 185

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               +LE  +    +  P +K + ++  +  +F R  L +EEV +LRGI++ L K
Sbjct: 186 LLYAHLEQVMIASDFLDP-QKPRLLMQRIRRLFGRARLEKEEVRILRGILTALGK 239


>gi|269467901|gb|EEZ79640.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 245

 Score =  278 bits (711), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 4/239 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              +++V+     NIG  ARAM N NL++L LVNP+ G+PS  A + ++ AD ++ +  V
Sbjct: 10  SVRVVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPK-GYPSAVATARASGADDLLANAVV 68

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGL 132
              L+EA+   H +   +AR RN     +    A   + +     GQ V ++FG E++GL
Sbjct: 69  CETLEEALQGSHLVIGASARQRNIKWKQMDVVGACSEIQQATTTEGQEVSVVFGTEKYGL 128

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           TNEE+ L   +++ P NP + SLN++ A+ +  ++   +   ++ +  K  N  A+  EL
Sbjct: 129 TNEELDLCQILMTIPGNPNYFSLNVASAIQVFAYQNYIS--NTTTEFEKSSNELASFDEL 186

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             F  +L   LE   YF     K+ ++  L   F R E  +EEV + RGI+  +  F +
Sbjct: 187 EGFYTHLTQVLEHIEYFEDKRPKELLMRRLRRFFGRSEPEKEEVAIFRGILRNIRPFKK 245


>gi|209527558|ref|ZP_03276059.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
           CS-328]
 gi|209491981|gb|EDZ92335.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
           CS-328]
          Length = 255

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 11/246 (4%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + +     I+LV+P    N+G  AR M N  LTQ+ LVNP     S +A++ + +A  V+
Sbjct: 7   ETALAKIRIVLVEPAGALNVGSCARVMKNMGLTQMVLVNPHCDPMSCEAKTMAVHAQDVL 66

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +S ++  +L  A+       ATTAR+R+  +++  P+     L           +IFG E
Sbjct: 67  ESAQIVDSLPPALIGCQKAIATTARDRSFDRTLEHPRTTLPWLLHS-----PAALIFGPE 121

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-- 186
             GL+N E+  +  I+  P +  + SLN++QAV +  +E   ++    ++N      P  
Sbjct: 122 DRGLSNTELNYAQRIVRIPSSSAYESLNLAQAVAVCCYELSLSAQTLIDQNTLPSPEPSE 181

Query: 187 ---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              AT  +L  +   LE  L + GY  P     + ++    +F R +    EV +LRG++
Sbjct: 182 PLSATLDQLEGYYQQLETLLLKIGYVYPHTVSSR-MEKFRHLFNRAQPSSTEVAMLRGVI 240

Query: 244 STLDKF 249
           S ++  
Sbjct: 241 SQVEWA 246


>gi|119494568|ref|ZP_01624706.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
 gi|119452100|gb|EAW33310.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
          Length = 317

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 123/267 (46%), Gaps = 21/267 (7%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L  +     IILV+P    N+G VAR + N  L QL  VNP+     E+A+  + +A  +
Sbjct: 2   LDEALAQVRIILVEPAGALNVGSVARILKNMGLQQLVFVNPQCDPQCEEAQRMAVHAADL 61

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +++  + + L EA+       ATTAR R+    +  P+     L E         +IFG 
Sbjct: 62  LETATITATLPEALTGCQRAIATTARKRSLETPLEHPRHGLGWLLET-----PSALIFGP 116

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS----------- 176
           E  GL+NEE+  +   +  P +  +P+LN++QAV +  +E  + + V+            
Sbjct: 117 EDRGLSNEELKYAQRFVRIPSSSAYPALNLAQAVAVCCYELSQLANVNPNISAEDLSASA 176

Query: 177 -EKNVKEQNTPATK---GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
             + V     PA+      L  F ++LE  L   GY  P     + ++    +F R +L 
Sbjct: 177 ASRPVSSPIQPASSVPLERLEGFYEHLETLLLNIGYLYPHTAASR-MEKFRRLFNRADLS 235

Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNV 259
           + EV +LRGI+S ++     + +   V
Sbjct: 236 QTEVNMLRGILSQMEWALNSTQQSGTV 262


>gi|254416767|ref|ZP_05030517.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176507|gb|EDX71521.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 262

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 16/260 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     IILV+P    N+G VAR M N  L QL LVNP     + +AR  + +   V++S
Sbjct: 2   TLANVRIILVEPAGALNVGSVARVMKNMGLNQLWLVNPHCNPRASEARQMAVHGVEVLES 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +  + L EA+       ATTAR R+   ++  P+ A   L   +       +IFG E  
Sbjct: 62  AQQVATLPEALEGCQRAIATTARTRHLPTTLEPPRLALPWL---LAENITSALIFGPEDR 118

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE------------K 178
           GL+N+E+  +   +  P NP +PSLN++QAV +  +E  + + +SS+             
Sbjct: 119 GLSNDELNYAQRFVCIPANPEYPSLNLAQAVAVCCYELFQLTSLSSQTRHSTSLQAPQTH 178

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
           +    +T A+   + ++  +LE  L + GY  P     + ++    ++ R  L  E+V +
Sbjct: 179 HGTSLHTTASLDAIEAYFQHLEAVLLKIGYLHPHTATSR-MEKFRRLYYRAMLTPEDVAM 237

Query: 239 LRGIVSTLDKFSRQSSRRNN 258
           LRGI+   +   +   R   
Sbjct: 238 LRGILRQTEWAVQFMPRSEQ 257


>gi|218531400|ref|YP_002422216.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           chloromethanicum CM4]
 gi|218523703|gb|ACK84288.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           chloromethanicum CM4]
          Length = 245

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/246 (42%), Positives = 161/246 (65%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  
Sbjct: 1   MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V++ L EAIADLHF+ ATTAR R   K V AP++A     ERI  G+ VG++FGRER G
Sbjct: 61  KVYATLPEAIADLHFLLATTARERGQMKRVFAPEDAMAATAERIGRGERVGLMFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190
           L+N+E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+ 
Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATRE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +LS    LE +L   G+  P EK++ +  ++  +  R  +  ++V   RG +  L++ +
Sbjct: 181 AMLSLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKA 239

Query: 251 RQSSRR 256
           R++   
Sbjct: 240 RKTDEA 245


>gi|161524370|ref|YP_001579382.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|160341799|gb|ABX14885.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans ATCC 17616]
          Length = 289

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV 73
             +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V
Sbjct: 44  RFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHV 103

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            S L EA++ +H+  A TAR R      LAP+ AA     ++ SG ++ ++FG ER GL 
Sbjct: 104 VSTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLA 162

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATK 189
           NE +   +A+   P NP + SLN++QAV ++ +E      E +   +++   +  T A  
Sbjct: 163 NEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQS 222

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            E+     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI   +
Sbjct: 223 DEIERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 278


>gi|220924676|ref|YP_002499978.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           nodulans ORS 2060]
 gi|219949283|gb|ACL59675.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           nodulans ORS 2060]
          Length = 248

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/238 (42%), Positives = 156/238 (65%), Gaps = 2/238 (0%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +    PVIILV+PQL ENIGM ARAM NF L++LRLV P+ GWP +  R +++ A  V+D
Sbjct: 4   HPPPRPVIILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLD 63

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              + + + EAI DLH + ATTAR R   K V+ P  A   +  R+ +G+ VGI+FGRER
Sbjct: 64  GATIHATVAEAIGDLHHVLATTARERGQMKRVMGPDAAMQAVVGRLSAGERVGILFGRER 123

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPAT 188
            GL+N+E++L++AI++FPV+P  PSLN++Q+VLL+ +E    + +++     E ++ PA+
Sbjct: 124 VGLSNDEVSLADAIVTFPVDPKHPSLNLAQSVLLVAYEWRRAAGLAALPFDGELRSPPAS 183

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           +  LL+  + LE +L+  GYF P EK+  M+ +L  I  R  +  ++V  LRG++  L
Sbjct: 184 REALLALFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDVRSLRGVLRAL 240


>gi|240139894|ref|YP_002964371.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
 gi|240009868|gb|ACS41094.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
          Length = 245

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/246 (42%), Positives = 161/246 (65%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  
Sbjct: 1   MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V++ L EAIADLHF+ ATTAR R   K V AP++A     ERI  G+ +G++FGRER G
Sbjct: 61  KVYATLPEAIADLHFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190
           L+N+E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+ 
Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATRE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +LS    LE +L   G+  P EK++ +  ++  +  R  +  ++V   RG +  L++ +
Sbjct: 181 AMLSLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKA 239

Query: 251 RQSSRR 256
           R++   
Sbjct: 240 RKTDEA 245


>gi|297539147|ref|YP_003674916.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297258494|gb|ADI30339.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera sp. 301]
          Length = 257

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 4/235 (1%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            S     ++L       NIG  ARAM    L  L LV P D +P   A + S  A  +++
Sbjct: 16  ESLHNVRVVLCQTSHPGNIGSAARAMKTMGLKHLYLVKP-DKFPDAHATALSTGAADLLE 74

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           +  V   L EA+         +AR R     ++  +EAA+  + +I + Q + ++FG E 
Sbjct: 75  NAIVTETLSEALQGCVLAIGMSARKRQISHELVNVREAAMRAS-KIAASQPIALVFGTEM 133

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL+N E+     +   P NP + SLN++ AV +M +E     +      +      AT 
Sbjct: 134 SGLSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMCYEMRMAVLECKLDEITP-TEYATN 192

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             L     +LE +L + GY  P    KK+ + +  I+ R +L +EEV LLRGI++
Sbjct: 193 EALEGLYAHLEDTLIKIGYLNP-NAPKKLSERIRRIYARAKLEKEEVNLLRGILT 246


>gi|197119062|ref|YP_002139489.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197088422|gb|ACH39693.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 245

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 117/242 (48%), Gaps = 6/242 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  Q   NIGMV RAM N  L+ LRLVNP        A   + +A  ++DS R+F++
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNP-CQVDHLDAVKFAVSARNLLDSARIFTS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AIAD  F  ATT R+      +  P E     +        + ++FGRE  GLT +E
Sbjct: 68  LEDAIADCEFSVATTRRHGKYRNEISTPAEIVERFSA-CAPASRMALVFGREDSGLTTDE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL     +      F SLN+SQAVL+  +E ++     +   VK+    A    L    
Sbjct: 127 VALCRWQATIETADEFGSLNLSQAVLIFCYEFLKGV---APAPVKQARDIAGSASLEPLY 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
            ++E S    GY  P +    M+  L  IF R EL   EV  LRG++S +D    +   +
Sbjct: 184 QHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQIDWACSEFKGK 242

Query: 257 NN 258
             
Sbjct: 243 KG 244


>gi|299770509|ref|YP_003732535.1| rRNA methylase [Acinetobacter sp. DR1]
 gi|298700597|gb|ADI91162.1| rRNA methylase [Acinetobacter sp. DR1]
          Length = 279

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 133/267 (49%), Gaps = 20/267 (7%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I++V+  L  NIG   RAM    L +L LV P+  +P    ++ +A A  + + +
Sbjct: 13  LAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHL 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L++AI D H ++ T+AR+R     +L  + AA    +    GQ + I+FGRE  G
Sbjct: 72  EIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATTQGQQIAIVFGREDRG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------------K 178
           LTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E   +++   +             +
Sbjct: 132 LTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEQVDQNVDEMPLVQGQ 191

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
           +++      T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R E  L
Sbjct: 192 SMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHL 250

Query: 239 LRGIVSTLD-----KFSRQSSRRNNVL 260
           LRGI S +      K+ +  S + +  
Sbjct: 251 LRGIFSRVQALTSGKWKKALSDKEDQP 277


>gi|16272328|ref|NP_438541.1| hypothetical protein HI0380 [Haemophilus influenzae Rd KW20]
 gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 241

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 131/241 (54%), Gaps = 14/241 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 60  RVVDSFDEAVDDCPLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  +L  F DY E   +  G+     + + ++  L  ++ R +L + E+ +L G++S ++
Sbjct: 176 TTDQLAYFFDYTERIYQSLGFI----QNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVE 231

Query: 248 K 248
           K
Sbjct: 232 K 232


>gi|298368968|ref|ZP_06980286.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282971|gb|EFI24458.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 271

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/273 (23%), Positives = 129/273 (47%), Gaps = 21/273 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           M    P L +      I+L       NIG  ARAM    L+ L LV              
Sbjct: 1   MNQLKPALPDFLNNIRIVLTRTSHPANIGSAARAMKTMGLSDLVLVAPNLMSTPMTAVPP 60

Query: 47  -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                NP++    E++ + ++ A  V+ + R+ + L +A+AD     A T+R R     +
Sbjct: 61  VFDPQNPQNFKLPEESFTLASGAADVLHNARITATLDDALADTTISCALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRKLVPELLQAARRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    + +    ++++++  AT  ++   + ++E  +++ G+F      ++++  
Sbjct: 181 QVVCYEIFSQTDM-PMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNSERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           + S+F R     E++ +LRG  +T+     +  
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTVSHRVNKKD 271


>gi|323138521|ref|ZP_08073589.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
 gi|322396155|gb|EFX98688.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
          Length = 289

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/249 (41%), Positives = 159/249 (63%), Gaps = 6/249 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68
           GP IILV PQL  NIGM ARAM NF L+ LRLV+PR+GWP      + A +++A A  ++
Sbjct: 16  GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGAYRKGAYAAAAGATHLL 75

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +++ +++EAI DL F+YA TAR R   K V  P +A      R  +G+  G++FG E
Sbjct: 76  EGAKLYDSVREAIEDLSFVYAATARGRGQMKPVHTPAQALPTTAARHAAGERHGVLFGPE 135

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPA 187
           R GL N+++AL++AI++FPVNP + SLN++QAVLL  +E    +        ++E++ PA
Sbjct: 136 RTGLDNDDVALADAILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDVIPFEIEERSPPA 195

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T+   L+F D+LE  L++RG+FRP+ KK  M  +L ++F R  L  ++V  L G+V  L 
Sbjct: 196 TREMTLAFFDFLENELDKRGFFRPLTKKPVMSRNLRNMFHRMSLTEQDVRTLWGVVVRLV 255

Query: 248 KFSRQSSRR 256
           +  R+  ++
Sbjct: 256 EGPRRDPKK 264


>gi|170752133|ref|YP_001758393.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
 gi|170658655|gb|ACB27710.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 261

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/251 (40%), Positives = 153/251 (60%), Gaps = 4/251 (1%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P           P +ILV+PQL ENIGM ARAM NF L++LRLVNP++GWP +  R +
Sbjct: 13  VAPRKVTELPPGIAPAVILVEPQLAENIGMTARAMANFGLSELRLVNPKNGWPKKGVREA 72

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  V+D+  ++ ++ EAIAD  ++ ATTAR R   K V AP+EA   L  R   GQ 
Sbjct: 73  ASGATHVLDAAAIYGSVAEAIADCQYVLATTARERGQMKRVFAPEEAMGELVAR--EGQR 130

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             ++FGRER GLTN+E++L++AI++FPV+P FPSLN++QAVLL+ +   + S  +     
Sbjct: 131 TAVMFGRERVGLTNDEVSLADAIVTFPVSPDFPSLNLAQAVLLVGYAWRQASGRARLPFT 190

Query: 181 KE-QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
            E  + PAT+  L++    LE +L+  G+  P EKK+ +  ++  +  R  L  ++V   
Sbjct: 191 GELLSPPATREALIALFGSLEAALDGAGF-YPPEKKEIIARNMRDMLHRMSLTEQDVRTF 249

Query: 240 RGIVSTLDKFS 250
           RG +  L +  
Sbjct: 250 RGALRALTRKG 260


>gi|262278807|ref|ZP_06056592.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262259158|gb|EEY77891.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 279

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 129/258 (50%), Gaps = 15/258 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I++V+  L  NIG   RAM    L +L LV P+  +P    ++ +A A  + + +
Sbjct: 13  LAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDLFEHL 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L++AI D H ++ T+AR+R     +L  + AA    +    GQ + I+FGRE  G
Sbjct: 72  EIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-------------SEK 178
           LTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E   +++                 +
Sbjct: 132 LTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEKVDQNVDEMPLVQGQ 191

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
           +++      T+ ++  F  +LE  L E  +  P E  + +   L  +F R +L R E  L
Sbjct: 192 SMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHL 250

Query: 239 LRGIVSTLDKFSRQSSRR 256
           LRGI S +   +    ++
Sbjct: 251 LRGIFSRVQALTSGKWKK 268


>gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
 gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
          Length = 267

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 109/244 (44%), Gaps = 10/244 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L       NIG  ARAM    L  L LVNPR  +P ++A   +  A  ++   
Sbjct: 25  LDKVRIVLSHTSHPGNIGGAARAMKTMGLDSLYLVNPR-FFPDKEAERRATGALDILHKA 83

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V   L EA++      A TAR R+    V   ++ A  L +       V ++FG E  G
Sbjct: 84  KVCDTLDEALSGTVLAAAVTARQRDLSHEVFDGRQGATKLLDLAQKD-FVALVFGTEMSG 142

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-------SIVSSEKNVKEQN 184
           LT  E++    II  P NP + SLN++ AV +M +E              S    +    
Sbjct: 143 LTTLEVSKCQIIIHIPANPEYSSLNLASAVQVMAYELRMACRDLLETPPASPTLTLHGGG 202

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             AT  E+     +LE      G+  P E  K+++  +  +F R  L +EEV +LRGI+S
Sbjct: 203 MAATFDEIELLYAHLEQVAISSGFLDPQE-PKRLMQRMRRLFARARLEKEEVNILRGILS 261

Query: 245 TLDK 248
             +K
Sbjct: 262 ACEK 265


>gi|296448617|ref|ZP_06890486.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium
           OB3b]
 gi|296253867|gb|EFH01025.1| tRNA/rRNA methyltransferase (SpoU) [Methylosinus trichosporium
           OB3b]
          Length = 275

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/260 (42%), Positives = 160/260 (61%), Gaps = 7/260 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSANADCV 67
           GP I+LV PQL  NIGM ARAM NF L+ LRLV PR+GWP+      E + S++A A  +
Sbjct: 16  GPTIVLVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPTRDPVYREASYSAAAGAAFL 75

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +DS +++   +EAIADL F+YA TAR R   K V  P  A      RI +G+  G+IFG 
Sbjct: 76  LDSAKLYETAREAIADLTFVYAATARERGQMKPVTTPAAALPQTVARIAAGERHGVIFGP 135

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTP 186
           ER GL N+E+AL+++I++FPVNP + SLN++QAVLL  +E    +   +   +  E++ P
Sbjct: 136 ERTGLDNDEVALADSILTFPVNPAYASLNLAQAVLLTGYEWFRAAHGDAIPFDNSERSPP 195

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT+   LSF D+LE  L+ER +FRP  KK  M  +L ++F R  L  ++V  LRG+V  L
Sbjct: 196 ATREMTLSFFDFLERELDERQFFRPETKKPVMSRNLRNMFHRMGLTEQDVRTLRGMVVRL 255

Query: 247 DKFSRQSSRRNNVLLQKTEK 266
            +  R+  ++ +       +
Sbjct: 256 IEGPRREPKKASRRNPSEPE 275


>gi|189350875|ref|YP_001946503.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189334897|dbj|BAG43967.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
          Length = 276

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV 73
             +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V
Sbjct: 31  RFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHV 90

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            S L EA++ +H+  A TAR R      LAP+ AA     ++ SG ++ ++FG ER GL 
Sbjct: 91  VSTLGEALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLA 149

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATK 189
           NE +   +A+   P NP + SLN++QAV ++ +E      E +   +++   +  T A  
Sbjct: 150 NEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGTLAQS 209

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            E+     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI   +
Sbjct: 210 DEIERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 265


>gi|77919150|ref|YP_356965.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77545233|gb|ABA88795.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter
           carbinolicus DSM 2380]
          Length = 244

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 3/242 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++LV+PQ   NIG V RAM NF  + LRLVNP      + AR  +  A  +++  R+
Sbjct: 5   HICVVLVEPQGPLNIGSVCRAMMNFGFSDLRLVNPVADHLCDDARRMAVKASGILEGARL 64

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L  A+AD +  Y TT R     +  L P +AA         G  V  +FGRE  GL 
Sbjct: 65  FPDLPSALADCNLAYGTTRRFGKYREDFLHPDDAAREFIP-ATQGGRVAWVFGREDKGLE 123

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
             E+ L    ++ P +   PS+N++Q+V + ++E    + ++  K    ++T ++   L 
Sbjct: 124 TSELDLCQRFVTIPTDDACPSMNLAQSVSICLYETSRVAAIACGKTAGRKST-SSIATLE 182

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +   ++  +L + G+  P +    +L     IF R  L   EV +LRG+ S LD  + Q 
Sbjct: 183 AMYRHMRDTLTDIGFLDP-QNPDHILRSFRRIFGRAGLNDREVRILRGLWSRLDWLNGQR 241

Query: 254 SR 255
             
Sbjct: 242 RE 243


>gi|254562318|ref|YP_003069413.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
 gi|254269596|emb|CAX25567.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
          Length = 245

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/246 (41%), Positives = 160/246 (65%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  
Sbjct: 1   MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V++ L EAIADL F+ ATTAR R   K V AP++A     ERI  G+ +G++FGRER G
Sbjct: 61  KVYATLPEAIADLQFLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190
           L+N+E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+ 
Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATRE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +LS    LE +L   G+  P EK++ +  ++  +  R  +  ++V   RG +  L++ +
Sbjct: 181 AMLSLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKA 239

Query: 251 RQSSRR 256
           R++   
Sbjct: 240 RKTDEA 245


>gi|322420060|ref|YP_004199283.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
 gi|320126447|gb|ADW14007.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M18]
          Length = 245

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 6/243 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  Q   NIGMV RAM N  L  LRLVNP        A   + +A  +++S R+F++
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLRDLRLVNP-CQVDHLDAIKFAVSARDLLESARIFTS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+AD  +  ATT R+      +  P E           G  + ++FGRE  GLT +E
Sbjct: 68  LEDALADSEYSVATTRRHGKYRSEICTPPEIVERFAG-CAPGSRLALVFGREDSGLTTDE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL     +      F SLN+SQAVL+  +E ++ +   +   VK     A    L    
Sbjct: 127 VALCRWQSTIETADEFGSLNLSQAVLIFCYEFLKGA---APAPVKAARELAGSSSLEPMY 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
            ++E +    GY  P +    M+  +  IF R EL   EV  LRG++S +D    +   +
Sbjct: 184 SHMEKTFLRIGYLNP-QNPDHMMRTMRRIFSRAELDEREVASLRGLLSQIDWACAEFKGK 242

Query: 257 NNV 259
              
Sbjct: 243 KGA 245


>gi|163852560|ref|YP_001640603.1| RNA methyltransferase [Methylobacterium extorquens PA1]
 gi|163664165|gb|ABY31532.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           extorquens PA1]
          Length = 245

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 104/242 (42%), Positives = 160/242 (66%), Gaps = 2/242 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  
Sbjct: 1   MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V++ L EAIADLHF+ ATTAR R   K V AP++A     ERI  G+ +G++FGRER G
Sbjct: 61  KVYATLPEAIADLHFLLATTARERGQMKRVFAPEDALTATAERIGRGERIGLMFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKG 190
           L+N+E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+ 
Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGEMLSPPATRE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            +LS    LE +L   G+  P EK++ +  ++  +  R  +  ++V   RG +  L++ +
Sbjct: 181 AMLSLFASLEETLAGAGF-YPPEKQEIIARNMRDMLHRMAMTEQDVRTFRGALRALNRKA 239

Query: 251 RQ 252
           R+
Sbjct: 240 RK 241


>gi|237812913|ref|YP_002897364.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei MSHR346]
 gi|237505076|gb|ACQ97394.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei MSHR346]
          Length = 338

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 55  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 114

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 115 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 173

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 174 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 233

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 234 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 292

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 293 RGIAKHI 299


>gi|300691860|ref|YP_003752855.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
 gi|299078920|emb|CBJ51581.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
          Length = 286

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 117/252 (46%), Gaps = 13/252 (5%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRD--GWPSEKARSSS 61
            L+  A     +LV+     N+G  ARA+      +     LV PR+        A + +
Sbjct: 18  TLRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPGAQSHPDAVAMA 77

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQN 120
           + AD V+   RV  +  EA+A    + A TAR R      + P+ AA  +   + S G  
Sbjct: 78  SGADDVLAGARVVDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLASPGAT 137

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK-- 178
           V  +FG ER+GL NE +   + +   P NP + SLN+SQAV L+ +E     +  +    
Sbjct: 138 VAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGD 197

Query: 179 ----NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
                V     PAT  ++     +LE +L E G+  P +  KK++  L  +F R +L  E
Sbjct: 198 TRVDGVGFVGEPATAEQIDGMFAHLERALVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAE 256

Query: 235 EVFLLRGIVSTL 246
           EV +LRGI   +
Sbjct: 257 EVNILRGIAKRM 268


>gi|221214723|ref|ZP_03587692.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD1]
 gi|221165262|gb|EED97739.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD1]
          Length = 274

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV 73
             +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V
Sbjct: 29  RFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHV 88

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            S L +A++ +H+  A TAR R      LAP+ AA     ++ SG ++ ++FG ER GL 
Sbjct: 89  VSTLGDALSGVHWSIALTARTREYGPPRLAPRAAAAHACTQVESG-DIALVFGNERTGLA 147

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATK 189
           NE +   +A+   P NP + SLN++QAV ++ +E      E +   +++   +  T A  
Sbjct: 148 NEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPAQQPAADTGTLAQS 207

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            E+     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI   +
Sbjct: 208 DEIERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 263


>gi|148554055|ref|YP_001261637.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
 gi|148499245|gb|ABQ67499.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
          Length = 253

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/237 (41%), Positives = 148/237 (62%), Gaps = 4/237 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A  PVI+LV PQLGENIG  ARAM NF LT++RLV PRDGWP+ +A  +++ AD V++  
Sbjct: 17  APPPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVTPRDGWPNPQAGPAASGADIVLEGA 76

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RVF ++ EA AD   +YATT R R   K V+ P+EAA  ++          I+FG ER G
Sbjct: 77  RVFDSVAEATADCAHVYATTVRKRGVTKPVMTPEEAARGIH---GEPGRSAILFGPERSG 133

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L  +++A++  I++ P+NP F SLN++QAV+L+ +E  +   ++S   V + + PA + E
Sbjct: 134 LETDDVAVARTIVTVPINPEFGSLNLAQAVILVAYEWSKGIALASPPAV-DLDPPAPQVE 192

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           L   + +L+  L E GY+ P ++       L S+  +P    +EV  LRG++STL+K
Sbjct: 193 LEGLIGHLDRLLAESGYYFPPDRVPATRRTLRSLLTKPAWNAQEVRTLRGVLSTLEK 249


>gi|325121908|gb|ADY81431.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 271

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 133/271 (49%), Gaps = 20/271 (7%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +        I++V+  L  NIG   RAM    L +L LV P+  +P    ++ +A A  +
Sbjct: 1   MSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGAQDL 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            + + +   L++AI D H ++ T+AR+R     +L  + AA    +    GQ + I+FGR
Sbjct: 60  FEHLEIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATCQGQQIAIVFGR 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS------------ 175
           E  GLTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E   +++              
Sbjct: 120 EDRGLTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQEKVDQEVDEMPL 179

Query: 176 -SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
              ++++      T+ ++  F  +LE  L E  +  P +  + +   L  +F R +L R 
Sbjct: 180 VQGQSMQWDEPLVTQQQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRM 238

Query: 235 EVFLLRGIVSTLD-----KFSRQSSRRNNVL 260
           E  LLRGI S +      K+ +  S + +  
Sbjct: 239 EYHLLRGIFSRVQALTSGKWKKALSDKEDQP 269


>gi|253700177|ref|YP_003021366.1| RNA methyltransferase TrmH [Geobacter sp. M21]
 gi|251775027|gb|ACT17608.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M21]
          Length = 245

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 116/242 (47%), Gaps = 6/242 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  Q   NIGMV RAM N  L+ LRLVNP        A   + +A  ++DS R+F++
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNP-CQVDHLDAVKFAVSARNLLDSARIFTS 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+AD  F  ATT R+      +  P E     +        + ++FGRE  GLT +E
Sbjct: 68  LEDALADCEFSVATTRRHGKYRNEISTPAEIVERFSA-CAPASRLALVFGREDSGLTTDE 126

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL     +      F SLN+SQAVL+  +E ++     +    K+    A    L    
Sbjct: 127 VALCRWQSTIETADEFGSLNLSQAVLIFCYEFLKGV---APAPAKQARELAGSASLEPLY 183

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
            ++E S    GY  P +    M+  L  IF R EL   EV  LRG++S +D    +   +
Sbjct: 184 QHMERSFLRIGYLNP-QNPDHMMRTLRRIFSRAELDEREVSSLRGLLSQMDWACAEFKGK 242

Query: 257 NN 258
             
Sbjct: 243 KG 244


>gi|221198388|ref|ZP_03571434.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2M]
 gi|221208935|ref|ZP_03581932.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2]
 gi|221171218|gb|EEE03668.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2]
 gi|221182320|gb|EEE14721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2M]
          Length = 274

 Score =  275 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 8/237 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV 73
             +LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V
Sbjct: 29  RFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHV 88

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA++ + +  A TAR R      LAP+ AA     ++ SG ++ ++FG ER GL 
Sbjct: 89  VPTLGEALSGVQWSIALTARTREYGPPRLAPRAAAAHARTQVESG-DIALVFGNERTGLA 147

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATK 189
           NE +   +A+   P NP + SLN++QAV ++ +E      E +   +++   +    A  
Sbjct: 148 NEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQTSEPAQQPAADTGALAQS 207

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            E+     +LE +L    +  P    KK++  L  +F R  L REEV +LRGI   +
Sbjct: 208 DEIERMYLHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGIAKHI 263


>gi|76809515|ref|YP_334074.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|254261703|ref|ZP_04952757.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710a]
 gi|76578968|gb|ABA48443.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710b]
 gi|254220392|gb|EET09776.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710a]
          Length = 346

 Score =  275 bits (703), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 55  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 114

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 115 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 173

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 174 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 233

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 234 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 292

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 293 RGIAKHI 299


>gi|113477325|ref|YP_723386.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168373|gb|ABG52913.1| RNA methyltransferase, TrmH family, group 1 [Trichodesmium
           erythraeum IMS101]
          Length = 248

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 8/244 (3%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+  +    I+LV+ +   N+G VAR M N  L  L LVNP+      +AR  + +   +
Sbjct: 2   LKLESTQIRIVLVEAKGPLNVGSVARIMKNMGLNHLVLVNPQCDPYGAEARQMAVHGVEI 61

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++   +   L EA+   H   ATT+ +R+    +  PK +   L      G +  +IFGR
Sbjct: 62  LEKATIVPTLPEALKGCHRAIATTSLDRSLPTHLENPKHSLPWLL-----GYSGALIFGR 116

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNT 185
           E  GLTN E+  +   +    +  +PSLN++QAV +  +E  +  +   ++ ++   ++ 
Sbjct: 117 EDRGLTNVELNYAQRFVRIQSDDSYPSLNLAQAVAICCYELYQAQLNQENNPQSQANRDL 176

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A+   L ++   LE  L + GY  P     + ++    ++ R     +EV +LRG++  
Sbjct: 177 EASLDVLEAYYQDLETILLKIGYLYPHTASSR-MEKFRRLYNRAYPSTQEVAMLRGMIRQ 235

Query: 246 LDKF 249
           ++  
Sbjct: 236 INWA 239


>gi|186682631|ref|YP_001865827.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186465083|gb|ACC80884.1| RNA methyltransferase, TrmH family, group 1 [Nostoc punctiforme PCC
           73102]
          Length = 246

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 4/248 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S  G  I+LV+P    NIG +AR M NF L  L LVNP+    S +A   + +A  +I+S
Sbjct: 2   SLAGLRIVLVEPAGPINIGAIARVMKNFGLYNLVLVNPQCDPLSTEALMMAVHAQEIIES 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             + + L EA+       ATT R R+    +  P+ A   L E     +   +IFGRE  
Sbjct: 62  AVLVATLPEALHGCVRAIATTGRVRSLETPLENPRTALPWLLEEPE--KPTALIFGREDR 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+NEE+  +   +  P +  + +LN++ AV +  +E  +++     + +  Q   A   
Sbjct: 120 GLSNEELNYAQRFVGIPTSKDYVALNLATAVAICCYELSQSAQQFDTQTIT-QTELAPLD 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            L  +   LE  L + GY  P     + +     ++ R  L   EV +LRGI+  ++   
Sbjct: 179 VLEGYYQQLESLLLKIGYVYPHTAASR-MGKFRQLYNRAHLKTGEVAMLRGILQQVEWAL 237

Query: 251 RQSSRRNN 258
           +      N
Sbjct: 238 KNQRDGEN 245


>gi|293608356|ref|ZP_06690659.1| RNA methyltransferase [Acinetobacter sp. SH024]
 gi|292828929|gb|EFF87291.1| RNA methyltransferase [Acinetobacter sp. SH024]
          Length = 279

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 20/267 (7%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I++V+  L  NIG   RAM    L +L LV P+  +P    ++ +A +  + + +
Sbjct: 13  LAQVRIVMVNTTLPANIGSALRAMKTMGLIKLVLVAPK-TYPHPDIQALAAGSQDLFEHL 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L++AI D H ++ T+AR+R     +L  + AA    +    GQ + I+FGRE  G
Sbjct: 72  EIVDTLEDAIKDCHLVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRG 131

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-------------SEK 178
           LTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E   +++                 +
Sbjct: 132 LTNEELALANYHLTIPVNPDYGVLNVAQAIQVVCYELRMSALEQQNLDQDADEMPLVQGQ 191

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
           +++      T+ ++  F  +LE  L E  +  P +  + +   L  +F R +L R E  L
Sbjct: 192 SMQWDEPLVTQKQMEEFYPHLEKMLTEIEFLDP-DNPRLLPLRLRRLFGRIQLDRMEYHL 250

Query: 239 LRGIVSTLD-----KFSRQSSRRNNVL 260
           LRGI S +      K+ +  S + +  
Sbjct: 251 LRGIFSRVQALTSGKWKKALSDKEDQP 277


>gi|254805142|ref|YP_003083363.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668684|emb|CBA06409.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 272

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 67/272 (24%), Positives = 130/272 (47%), Gaps = 21/272 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
           MT   P+L +      I+L       NIG  ARAM    L +L +V           NP 
Sbjct: 1   MTAPKPELPDYLGNIRIVLTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 50  DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
              P         E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 61  VFDPEYPQSFKSPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           + S+F R     E++ +LRG  +TL +  +  
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270


>gi|166364610|ref|YP_001656883.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166086983|dbj|BAG01691.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 266

 Score =  274 bits (702), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 4/239 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
            +      IILV+P    N+G  AR M N  L++L +VNP      E+AR  + +   V+
Sbjct: 9   SSPLDRLRIILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILGEEARRMAVHGIEVL 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++    + L EA+   H I ATT++ R+    +  P+ A   L   +       +IFG E
Sbjct: 69  ENCSRVATLGEALQGCHRIIATTSKPRHLNTPLETPRAALPWL---LTPNLESALIFGPE 125

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL+N E+  +   +  P NP + SLN++QAV +  +E  + +  +  +   E    AT
Sbjct: 126 DRGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQRATENRLEPPLETPPNAT 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              L  +  +LE  L + GY  P     + ++     + R     EE+ LLRGI+  ++
Sbjct: 186 FEALEGYYQHLESFLLKIGYLYPHTAAAR-MEKFRQFYHRARPTVEELALLRGIIGHIE 243


>gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13]
 gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13]
          Length = 243

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 4/239 (1%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +  K    +L       NIG  ARA+      QL L+NP + +P E A + ++ A  ++ 
Sbjct: 6   DIFKNIKFVLSHTSHPGNIGSTARAIKTMGFAQLSLINP-EKFPHEDADALASGAKDLLQ 64

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V S+L+E  AD + +   TAR R   +  L+ +E A  + E         ++FG E 
Sbjct: 65  HAQVASSLEEVTADCNVLIGFTARKRELTQEHLSIEEIAQKIIE--LKNNKFALLFGNET 122

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL NEEI   + +     N  + SLN+SQAV +  +E  +N          ++   AT 
Sbjct: 123 SGLKNEEIQHCHYLAYIDANKEYSSLNLSQAVQVTAYELRKNFNKKEFDVAIKEKKLATF 182

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            E   F ++LE +L E G+   ++  K+++  L  +F R ++  +EV +LRGI++ + K
Sbjct: 183 EEQNGFYEHLESTLNELGFLEKIQ-GKRLMHRLRLMFNRIQMDEDEVNILRGILNQISK 240


>gi|121998574|ref|YP_001003361.1| RNA methyltransferase [Halorhodospira halophila SL1]
 gi|121589979|gb|ABM62559.1| RNA methyltransferase, TrmH family, group 1 [Halorhodospira
           halophila SL1]
          Length = 249

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 5/250 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S +   I+LV      NIG  ARAM    L  L LV+P+      +A + +A A  V++ 
Sbjct: 2   SLERTRIVLVGTTHPGNIGAAARAMRTMGLRDLYLVDPQCDPGDPEAVARAAGAGDVLER 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            R   +L  A+      +  +AR+R   +  L  + AA     +   G ++  +FGRER 
Sbjct: 62  ARTAPDLATALTGCRLAFGLSARSRAERQPRLELRPAAESAVAQGGDG-DLAWVFGRERT 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLTN E+   + ++  P +P + SLN++Q+V L+ WE    +        + +  PA   
Sbjct: 121 GLTNAELDHCHYLVQIPTDPDYSSLNVAQSVQLVAWELRMAAAAGGPVQGQAEEPPAAVD 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL---D 247
            L  F D+LE      GY          +  L +IF R  L  +EV +LRG++S +    
Sbjct: 181 TLERFFDHLEEMAGRVGYLD-RHNPALTMRRLRNIFRRAWLTEDEVRMLRGLISHVLNPR 239

Query: 248 KFSRQSSRRN 257
           ++   + R+ 
Sbjct: 240 RWRESNCRKG 249


>gi|294650616|ref|ZP_06727971.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823499|gb|EFF82347.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 278

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 133/269 (49%), Gaps = 21/269 (7%)

Query: 9   QNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           QN+   P     I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A
Sbjct: 6   QNNMTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGA 64

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +I+ + +   L++AI D H ++ T+AR+R     +L  + AA          QN+ I+
Sbjct: 65  QDLIEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALHAASQQQNIAIV 124

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--------- 175
           FGRE  GLTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E    ++           
Sbjct: 125 FGREDRGLTNEELALANYNLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTTN 184

Query: 176 ------SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
                  ++ ++      T+ ++  F  + E  L E  +  P +  + +   L  +F R 
Sbjct: 185 EQMQLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIEFLDP-DNPRLLPLRLRRLFGRI 243

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
           +L R E  LLRG+ S +   +  S +++ 
Sbjct: 244 QLDRMEYHLLRGVFSRVQSLANGSWKKSQ 272


>gi|114771074|ref|ZP_01448514.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
 gi|114548356|gb|EAU51242.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
          Length = 249

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 146/240 (60%), Gaps = 1/240 (0%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
             P IIL+ PQ+GENIG  ARAM NF +  + +V+PRDGWP+ +A+S +A A  V+D+V+
Sbjct: 9   SKPSIILIGPQMGENIGASARAMLNFGIENMSIVSPRDGWPNARAKSMAAGAGRVLDTVQ 68

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +F    +A+ +L+F++ATTAR R+  K V++P+ A +        G+ VG +FG E  GL
Sbjct: 69  LFDKTSDALKNLNFVFATTARTRDLAKEVMSPERAMMYARALTQKGKKVGFMFGPESSGL 128

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGE 191
           +NE+IA +N ++S PVNP F SLN+SQ VLL+ +E    +I    + +       A+  E
Sbjct: 129 SNEDIAQANVLVSVPVNPEFSSLNLSQCVLLLAYEWQRQTIEIPHEIMALAGTEFASINE 188

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +   +D  E +L+ R +F P  K + ML    ++F R +L + +V +L GI   ++K   
Sbjct: 189 VQKLVDRSEEALQARNFFWPKNKSESMLLSFRNMFSRLKLTKMDVQILHGIFKAMEKSRN 248


>gi|307261328|ref|ZP_07543003.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869059|gb|EFN00861.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 10/231 (4%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
             L  NIG  ARAM    L+ LRLV+P +    E+A++ +A A  V+D+ ++F + ++AI
Sbjct: 14  TSLPANIGSAARAMKTMRLSNLRLVSPLNPI-DEQAQALAAGAKDVLDNAQIFDSFEQAI 72

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           AD   +  T+AR R+   S++ P+E   +  ER   G  V I+FGRER GLTNEE+   +
Sbjct: 73  ADCQLVIGTSARLRHLQNSLIEPRECGKLAVERAEQG-KVAIVFGRERVGLTNEELLKCH 131

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNTPATKGELLSFLD 197
             ++FP NP + SLN++ AV L  +E     +        + + E+        L  F +
Sbjct: 132 YHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNTEALEHFFN 191

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + E   ++ G+ R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 192 HTERLYKQLGFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|83720786|ref|YP_442465.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83654611|gb|ABC38674.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis E264]
          Length = 338

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 55  ARAARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMAS 114

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 115 GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 173

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            +FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E     
Sbjct: 174 FVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPP 233

Query: 183 QNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                  A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 234 DAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 292

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 293 RGIAKHI 299


>gi|59801097|ref|YP_207809.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
 gi|194098799|ref|YP_002001862.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
 gi|239999090|ref|ZP_04719014.1| putative methylase family protein [Neisseria gonorrhoeae 35/02]
 gi|240014003|ref|ZP_04720916.1| putative methylase family protein [Neisseria gonorrhoeae DGI18]
 gi|240016444|ref|ZP_04722984.1| putative methylase family protein [Neisseria gonorrhoeae FA6140]
 gi|240080563|ref|ZP_04725106.1| putative methylase family protein [Neisseria gonorrhoeae FA19]
 gi|240115823|ref|ZP_04729885.1| putative methylase family protein [Neisseria gonorrhoeae PID18]
 gi|240118121|ref|ZP_04732183.1| putative methylase family protein [Neisseria gonorrhoeae PID1]
 gi|240121569|ref|ZP_04734531.1| putative methylase family protein [Neisseria gonorrhoeae PID24-1]
 gi|240123670|ref|ZP_04736626.1| putative methylase family protein [Neisseria gonorrhoeae PID332]
 gi|254493868|ref|ZP_05107039.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260440361|ref|ZP_05794177.1| putative methylase family protein [Neisseria gonorrhoeae DGI2]
 gi|268594928|ref|ZP_06129095.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268596693|ref|ZP_06130860.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268601499|ref|ZP_06135666.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268603837|ref|ZP_06138004.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682301|ref|ZP_06149163.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|291043656|ref|ZP_06569372.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398959|ref|ZP_06643124.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717992|gb|AAW89397.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
 gi|193934089|gb|ACF29913.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512908|gb|EEH62253.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548317|gb|EEZ43735.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268550481|gb|EEZ45500.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268585630|gb|EEZ50306.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268587968|gb|EEZ52644.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622585|gb|EEZ54985.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|291012119|gb|EFE04108.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291610373|gb|EFF39483.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164381|gb|ADV07922.1| putative methylase family protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 271

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
           MT   P L +      IIL       NIG  ARAM    L +L +V           NP 
Sbjct: 1   MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60

Query: 50  DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
              P         E++   ++ A  V+ +  + + L EA+AD     A T+R R     +
Sbjct: 61  VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   L ++E  +++ G+F      ++++  
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|312113941|ref|YP_004011537.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219070|gb|ADP70438.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
          Length = 263

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/258 (42%), Positives = 166/258 (64%), Gaps = 11/258 (4%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            S   P IILV+PQLGENIG  ARAM NF L +LRLV PRDGWP+E AR+S+A A  ++D
Sbjct: 5   PSPSAPAIILVEPQLGENIGAAARAMANFGLRELRLVAPRDGWPNEAARASAALAVEIVD 64

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R++ +L  A+ADLH+I ATTAR+R   K VLAP  A   + ER  +    G++FG+ER
Sbjct: 65  GARLYPDLATAVADLHYIVATTARSRFLAKPVLAPDTAVTEIAERQAADLRCGVLFGKER 124

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME----NSIVSSEKNVK---- 181
            GL N ++A+++AI++ PV+P F SLN++Q+VLL  +E  +    +S+  +  +      
Sbjct: 125 TGLENSDVAIADAIMTAPVDPAFASLNLAQSVLLFAYEWRKLVNPHSLGRTLPDAPLGAG 184

Query: 182 ---EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
              + + PA +GEL++F ++LE  L+  G+  P EK++ M++++ ++F R     +EV  
Sbjct: 185 HRFKASRPAERGELIAFYEHLEGELDHCGFLFPPEKRETMVNNIRTMFARMAPTEQEVRT 244

Query: 239 LRGIVSTLDKFSRQSSRR 256
           LRG+V+ L +   Q S +
Sbjct: 245 LRGMVAILRRGPWQGSNK 262


>gi|134277341|ref|ZP_01764056.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 305]
 gi|134250991|gb|EBA51070.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 305]
          Length = 303

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|240125860|ref|ZP_04738746.1| putative methylase family protein [Neisseria gonorrhoeae SK-92-679]
 gi|268684458|ref|ZP_06151320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268624742|gb|EEZ57142.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
          Length = 271

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
           MT   P L +      IIL       NIG  ARAM    L +L +V           NP 
Sbjct: 1   MTALKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60

Query: 50  DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
              P         E++   ++ A  V+ +  + + L EA+AD     A T+R R     +
Sbjct: 61  VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   L ++E  +++ G+F      ++++  
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|167903380|ref|ZP_02490585.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei NCTC 13177]
          Length = 303

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|167739289|ref|ZP_02412063.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 14]
 gi|167916848|ref|ZP_02503939.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 112]
 gi|254184411|ref|ZP_04891001.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1655]
 gi|254297077|ref|ZP_04964530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 406e]
 gi|157807712|gb|EDO84882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 406e]
 gi|184214942|gb|EDU11985.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1655]
          Length = 301

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|187928095|ref|YP_001898582.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|187724985|gb|ACD26150.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
           12J]
          Length = 282

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 2   TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSE 55
           TP  P+ L+  A     +LV+     N+G  ARA+      +     LV PR  D     
Sbjct: 7   TPADPEILRQQATRCRFVLVETSHPGNVGSTARALKTMGFGEPGSFVLVRPREADAKRHA 66

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            A + ++ AD V+ + RV  ++ EA+A      A TAR R      + P+ AA  +   +
Sbjct: 67  DAVAMASGADDVLAAARVVDDIGEALAGASLTIALTARPREFGPRRIGPRAAAEEVAALL 126

Query: 116 F-SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                 V  +FG ER+GL NE +   + +   P NP + SLN+SQAV L+ +E     + 
Sbjct: 127 AAPDATVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLA 186

Query: 175 SSE------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228
            +       + V     PAT  ++    ++LE  L E G+  P +  KK++  L  +F R
Sbjct: 187 GTGTGDTRMEGVGFVGEPATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFAR 245

Query: 229 PELMREEVFLLRGIVSTL 246
            +L  EEV +LRGI   +
Sbjct: 246 TQLETEEVNILRGIAKRM 263


>gi|254197328|ref|ZP_04903750.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei S13]
 gi|169654069|gb|EDS86762.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei S13]
          Length = 309

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LA + AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLASRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|134296089|ref|YP_001119824.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134139246|gb|ABO54989.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           vietnamiensis G4]
          Length = 276

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 123/262 (46%), Gaps = 19/262 (7%)

Query: 2   TPYAPQLQNSAKGP---------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW 52
            P  P   ++A              +LV+P    N+G  ARA+     ++L LV PR   
Sbjct: 6   NPAVPSEPDAASSLPPSGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPH 65

Query: 53  --PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110
                +A + ++ AD V+    V   L +A++ +H+  A TAR R      LAP+ AA  
Sbjct: 66  VQSDPEAIAMASGADDVLAGAHVVPTLGDALSGVHWSIALTARTREYGPPRLAPRAAAAQ 125

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              ++ +G ++ ++FG ER GL NE +   +A+   P NP + SLN++QA+ ++ +E   
Sbjct: 126 ARAQVGAG-DIALVFGNERTGLANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRV 184

Query: 171 NSIV------SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224
             +        S+    E  T A   E+     +LE +L    +  P    KK++  L  
Sbjct: 185 AFLEHGGAQSQSQPVQAEVGTLAQSDEIERMYGHLERALIALDFLDP-RNPKKLMPRLRR 243

Query: 225 IFIRPELMREEVFLLRGIVSTL 246
           +F R  L REEV +LRG+   +
Sbjct: 244 LFARTGLEREEVNILRGVAKHI 265


>gi|226953026|ref|ZP_03823490.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226836233|gb|EEH68616.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 278

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 132/269 (49%), Gaps = 21/269 (7%)

Query: 9   QNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           QN+   P     I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A
Sbjct: 6   QNNMTKPLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGA 64

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +I+ + +   L++AI D H ++ T+AR+R     +L  + AA    +     QN+ I+
Sbjct: 65  QDLIEHIDIVETLEQAIQDCHLVFGTSARSRTIPWPLLDVRPAAKEALQAASQQQNIAIV 124

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--------- 175
           FGRE  GLTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E    ++           
Sbjct: 125 FGREDRGLTNEELALANYHLTIPVNPEYGVLNVAQAIQVVCYELRMAALEQISPVVDTSN 184

Query: 176 ------SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
                  ++ ++      T+ ++  F  + E  L E  +  P   +   L     +F R 
Sbjct: 185 EQMQLKQQQTMQWDEPLVTQQQMEEFYPHFEKMLTEIEFLDPNNPRLLPLRLR-RLFGRI 243

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
           +L R E  LLRG+ S +   +  S +++ 
Sbjct: 244 QLDRMEYHLLRGVFSRVQSLANGSWKKSQ 272


>gi|53723764|ref|YP_103289.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|254209320|ref|ZP_04915666.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           JHU]
 gi|52427187|gb|AAU47780.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 23344]
 gi|147750093|gb|EDK57164.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           JHU]
          Length = 306

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 23  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 82

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 83  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 141

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 142 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 201

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 202 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 260

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 261 RGIAKHI 267


>gi|121600581|ref|YP_993479.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124386415|ref|YP_001029091.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126449337|ref|YP_001080987.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|167001789|ref|ZP_02267581.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           PRL-20]
 gi|167894996|ref|ZP_02482398.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 7894]
 gi|167919632|ref|ZP_02506723.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei BCC215]
 gi|238561600|ref|ZP_00441709.2| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           GB8 horse 4]
 gi|254178315|ref|ZP_04884970.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 10399]
 gi|254200241|ref|ZP_04906607.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           FMH]
 gi|254358011|ref|ZP_04974284.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           2002721280]
 gi|121229391|gb|ABM51909.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           SAVP1]
 gi|124294435|gb|ABN03704.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           NCTC 10229]
 gi|126242207|gb|ABO05300.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           NCTC 10247]
 gi|147749837|gb|EDK56911.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           FMH]
 gi|148027138|gb|EDK85159.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           2002721280]
 gi|160699354|gb|EDP89324.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 10399]
 gi|238524188|gb|EEP87622.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           GB8 horse 4]
 gi|243062474|gb|EES44660.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           PRL-20]
          Length = 303

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|182678308|ref|YP_001832454.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634191|gb|ACB94965.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 271

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 112/249 (44%), Positives = 158/249 (63%), Gaps = 6/249 (2%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE-----KARSSSAN 63
           +N A GP IILV PQL  NIGM ARAM NF L+ LRLV PR+GWP E     +A +++A 
Sbjct: 11  ENVAGGPAIILVRPQLAVNIGMCARAMANFGLSDLRLVAPREGWPREGRFKDEAEAAAAG 70

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++ S ++++ L EA+ADL+FI+ATTAR R   K V  P +A      R+  G+  GI
Sbjct: 71  AVHLLASAKLYATLPEAVADLNFIWATTARERGQCKRVATPAQAMPENAARLALGERQGI 130

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKE 182
           +FG ER GL N++IAL++AI++FPVNP + SLN++QAVLL  +E  + +    +   + +
Sbjct: 131 LFGPERTGLANDDIALADAILTFPVNPAYASLNLAQAVLLTGYEWFQAAHNAEAPFQLAD 190

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            + PA +  +LSF DYLE  L+  G+FRP  K   M  +L +IF R  L  ++V  LRG+
Sbjct: 191 YSPPAPREMILSFFDYLEGELDRSGFFRPAGKAPVMRRNLRNIFHRMHLSEQDVRTLRGM 250

Query: 243 VSTLDKFSR 251
           V  L +  R
Sbjct: 251 VVRLVEGPR 259


>gi|319787464|ref|YP_004146939.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465976|gb|ADV27708.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 267

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 6/251 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV  Q   NIG  ARAM    L++L LV+P +    + A   SA A+ V+DS  V+
Sbjct: 19  IRIVLVGTQHPGNIGAAARAMKTMGLSRLVLVSP-EKPLDDTAYRRSAGAEDVLDSAPVY 77

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR+R      L P  AA    +    G  V ++FGRER GLTN
Sbjct: 78  ATLAEAVADCRMVLGCTARSRRVQLEQLEPDAAAQRALQATAEG-PVALVFGRERTGLTN 136

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGE 191
           EE+ L +A +  P +P F SLN++ AV ++ +E     +    +  +       PA+  +
Sbjct: 137 EELQLCHASVHIPSDPAFSSLNLAAAVQVLAYELRLAVLAADPAPAEPPPPDAQPASHEQ 196

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +  F   L  +L++  +          +  L  +F+R  L   EV LLRG+++   + +R
Sbjct: 197 VEGFFAQLADTLDDIDF-HKGRSPDSAMRKLRRLFLRTGLTVHEVRLLRGVLADAQRMAR 255

Query: 252 QSSRRNNVLLQ 262
            ++      L 
Sbjct: 256 LANEAGKGPLS 266


>gi|257138672|ref|ZP_05586934.1| RNA methyltransferase [Burkholderia thailandensis E264]
          Length = 306

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 23  ARAARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMAS 82

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 83  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 141

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            +FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E     
Sbjct: 142 FVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPP 201

Query: 183 QNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                  A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 202 DAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 260

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 261 RGIAKHI 267


>gi|254191444|ref|ZP_04897948.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157939116|gb|EDO94786.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 309

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|167563307|ref|ZP_02356223.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           oklahomensis EO147]
 gi|167570479|ref|ZP_02363353.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           oklahomensis C6786]
          Length = 291

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/260 (29%), Positives = 123/260 (47%), Gaps = 18/260 (6%)

Query: 3   PYAPQLQNSAKGPV-----------IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           P+AP    +   P             +LV+P    N+G  ARA+     ++L LV PR  
Sbjct: 10  PFAPSAGAAPSRPTRSARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVP 69

Query: 52  W--PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
                 +A + ++ AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA 
Sbjct: 70  HVQSDPEALAMASGADDVLASAHVVPTLADALNGVQWSIALTARSREYGPPRLAPRAAAA 129

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               ++ +G ++ ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E  
Sbjct: 130 SARRQLQTG-DIALVFGNERTGLSNEHVDRCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188

Query: 170 ENSIVSSEKNVKEQ---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
              +      +       T A   E+     +LE +L    +  P    KK++  L  +F
Sbjct: 189 VALLEDDASVMPRDAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLF 247

Query: 227 IRPELMREEVFLLRGIVSTL 246
            R  L REEV +LRGI   +
Sbjct: 248 ARTGLEREEVNILRGIAKHI 267


>gi|304387338|ref|ZP_07369530.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338589|gb|EFM04707.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
          Length = 272

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 21/272 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
           MT   P L        IIL       NIG  ARAM    L +L +V           NP 
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVTPNLMATPMTENPP 60

Query: 50  DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
              P         E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 61  VFDPEYPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           + S+F R     E++ +LRG  +TL +  +  
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270


>gi|282900733|ref|ZP_06308675.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194533|gb|EFA69488.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 245

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 4/244 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +++ +   +ILV+P    N+G +AR M NF L  L LVNP+    S ++   + +A  ++
Sbjct: 5   KSALEKIKVILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEIL 64

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++ R+  NL  A+A      AT  R+ N    + +P+ A   L     S +  G+IFGRE
Sbjct: 65  ENARIVDNLTTALAGCDRAIATIGRDYNGELPIESPRHALPWLLAE--SEKPAGLIFGRE 122

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GLTN+EI  +  ++S P +P + SLN++ AV +  +E    S+++ E         AT
Sbjct: 123 DRGLTNQEINYAQKLVSIPTSPEYTSLNLATAVSICCYEL-SQSLMTMEPGKMPTRDIAT 181

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L S+   LE  L   GY  P     + ++    ++ R EL   EV +LRGI+  +  
Sbjct: 182 LDVLESYYQELESLLLSIGYLYPHTTSSR-MEKFRHLYNRSELTTTEVAMLRGILKQVQW 240

Query: 249 FSRQ 252
             + 
Sbjct: 241 AIKN 244


>gi|86610208|ref|YP_478970.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558750|gb|ABD03707.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 276

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 9/244 (3%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
                   ++LV P    N+G +AR M N    Q  LV+P+      +A +++ +   ++
Sbjct: 9   PEQLAQVRLVLVQPAGPRNLGAIARVMKNMGFRQWVLVDPQCDPLDIEAITTAVHGADLL 68

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNF--KSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              R    L EA+     ++ TT R++       + +P++        + +     ++FG
Sbjct: 69  HQARKVQTLPEALQGCVQVFGTTGRSQTYPPEWQIQSPRQ----AFPALLAAGPAALVFG 124

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNVKEQN 184
            E  GL+NEE+AL +  I  P +  +PSLN++QAV +  +E         S    +    
Sbjct: 125 PEDRGLSNEELALCHRQIQIPTDATYPSLNLAQAVAICCYELYTLVCQSPSPAPPMPSPQ 184

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             A    L  F D+LE  L + GY  P   ++KML    ++F R  L   EV LLRGI+ 
Sbjct: 185 RLAPFELLEGFFDHLEALLLQIGYLHPHTARRKML-KFRALFQRAGLTVAEVALLRGILR 243

Query: 245 TLDK 248
            L  
Sbjct: 244 QLQW 247


>gi|159028241|emb|CAO88051.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 266

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 4/247 (1%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M+       +      IILV+P    N+G  AR M N  L++L +VNP     +E+AR  
Sbjct: 1   MSVDENNPSSPLDRLRIILVEPAGALNVGSTARIMRNMGLSRLIIVNPACDILAEEARRM 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           + +   V+++    + L EA+   H I ATT++ R+    +  P+ A   L   +     
Sbjct: 61  AVHGIEVLENCSQVATLGEALQGCHRIIATTSKPRHLNTPLETPRTALPWL---LTPNLE 117

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             +IFG E  GL+N E+  +   +  P NP + SLN++QAV +  +E  + +  +  +  
Sbjct: 118 SALIFGPEDRGLSNSELNHAQRFVGIPANPQYSSLNLAQAVAVCSYELYQMATENRLEPP 177

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
            E    AT   L  +  +LE  L + GY  P     + ++     + R     EE+ LLR
Sbjct: 178 LEMLPNATFEALEGYYQHLESFLLKIGYLYPHTAAAR-MEKFRQFYHRARPTVEELALLR 236

Query: 241 GIVSTLD 247
           GI+  ++
Sbjct: 237 GIIGHIE 243


>gi|262372308|ref|ZP_06065587.1| RNA methyltransferase [Acinetobacter junii SH205]
 gi|262312333|gb|EEY93418.1| RNA methyltransferase [Acinetobacter junii SH205]
          Length = 281

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 19/270 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +        I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A  
Sbjct: 8   DVSKQLDHVRIVMVNTTLPANIGSALRAMKTMGLSKLILVAPK-TYPHPDIDALAAGAQD 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +I+ +++   L++AI D H ++ T+AR+R     +L  + AA    +     QN+ I+FG
Sbjct: 67  LIEKIQIVDTLEQAIEDCHLVFGTSARSRTIPWPLLDVRPAAQESLKAANLDQNIAIVFG 126

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-- 184
           RE  GLTNEE+AL+N  ++ PVNP +  LN++QA+ ++ +E    ++  +++N  + +  
Sbjct: 127 REDRGLTNEELALANYHLTIPVNPSYGVLNVAQAIQVVCYELRMAALELNQQNTDQTDPQ 186

Query: 185 ---------------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
                             T+ ++  F  +LE  L E  +  P   +   L     +F R 
Sbjct: 187 EHMQLKQNQSMQWDEPLVTQKQMEEFYPHLEKMLTEIEFLDPNNPRLLPLRLR-RLFGRI 245

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259
           +L R E  LLRGI S +   +  S ++   
Sbjct: 246 QLDRMEYHLLRGIFSRVQALANGSWKKTQT 275


>gi|226198991|ref|ZP_03794554.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929091|gb|EEH25115.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pakistan 9]
          Length = 309

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|126454106|ref|YP_001066857.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167846415|ref|ZP_02471923.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei B7210]
 gi|242315889|ref|ZP_04814905.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106b]
 gi|126227748|gb|ABN91288.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106a]
 gi|242139128|gb|EES25530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106b]
          Length = 311

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDEAAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|126441973|ref|YP_001059578.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126221466|gb|ABN84972.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 668]
          Length = 303

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E  V  
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAQIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAVPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 257

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 258 RGIAKHI 264


>gi|17545880|ref|NP_519282.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428175|emb|CAD14863.1| putative trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 287

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 13/251 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRD--GWPSEKARSSSA 62
           L+  A     +LV+     N+G  ARA+      +     LV PR+        A + ++
Sbjct: 19  LRQRAARCRFVLVETSHPGNVGSTARALKTMGFCESGSYVLVRPREPGAQSHPDAVAMAS 78

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            AD V+   RV  ++ EA+A    + A TAR R      + P+ AA  +   + + G  V
Sbjct: 79  GADDVLADARVVDDVGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATV 138

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178
             +FG ER+GL NE +   + +   P NP + SLN+SQAV L+ +E     +  +     
Sbjct: 139 AFVFGNERYGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198

Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
               V     PAT  ++     +LE  L E G+  P +  KK++  L  +F R +L  EE
Sbjct: 199 RVDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257

Query: 236 VFLLRGIVSTL 246
           V +LRGI   +
Sbjct: 258 VNILRGIAKRM 268


>gi|309378837|emb|CBX22542.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 272

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 125/272 (45%), Gaps = 21/272 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           M    P L        I+L       NIG  ARAM    L +L +V P            
Sbjct: 1   MASEKPALPAYLDNIRIVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPP 60

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+ +  + + L EA+AD     A T+R R     +
Sbjct: 61  VFDPEYPQSFKLPEESFILASGAADVLHNAAIVATLDEALADTAIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAAQRGEQVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  +++ G+F      ++++  
Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           + S+F R     E++ +LRG  +TL +  +  
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 270


>gi|269213493|ref|ZP_05982089.2| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
           14685]
 gi|269146253|gb|EEZ72671.1| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
           14685]
          Length = 330

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 60  MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 119

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 120 VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 179

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 180 QTPRDLVPELLQAANRGEKVTLVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 239

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 240 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 297

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 298 MQSLFGRANTQTEDIDILRGFFNTV 322


>gi|240113067|ref|ZP_04727557.1| putative methylase family protein [Neisseria gonorrhoeae MS11]
 gi|240128370|ref|ZP_04741031.1| putative methylase family protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268599153|ref|ZP_06133320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268686768|ref|ZP_06153630.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268583284|gb|EEZ47960.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268627052|gb|EEZ59452.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 271

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
           MT   P L +      IIL       NIG  ARAM    L +L +V           NP 
Sbjct: 1   MTALKPALPDYLGNIRIILTRTGHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPP 60

Query: 50  DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
              P         E++   ++ A  V+ +  + + L EA+AD     A T+R R     +
Sbjct: 61  VFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   L ++E  +++ G+F      ++++  
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMLAHMESVMDDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|284799663|ref|ZP_05984511.2| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
           NJ9703]
 gi|284797648|gb|EFC52995.1| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
           NJ9703]
          Length = 304

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 34  MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 94  VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 153

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 154 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 213

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 214 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESLMNDIGFFN-RRNGERLMRR 271

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 272 MQSLFGRANTQTEDIDILRGFFNTV 296


>gi|292491983|ref|YP_003527422.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
           halophilus Nc4]
 gi|291580578|gb|ADE15035.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
           halophilus Nc4]
          Length = 242

 Score =  271 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 5/239 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S     I+LV      NIG  ARAM    L++L LVNP   +P  +A + ++ AD ++  
Sbjct: 2   SLAKVRIVLVGTTHPGNIGAAARAMHTMGLSRLYLVNP-ARFPCAEATARASGADELLAQ 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             + ++L +AIA    ++  +AR+RN     L  +    +  +    G+ V I+FGRE  
Sbjct: 61  AEICTSLPQAIAGCRMVFGLSARSRNISWPALDARACGALTVQEALEGE-VAIVFGREHS 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQNTPAT 188
           GL+N E+   +  +  P NP + SLN++ AV +M +E    ++  +        ++ PA+
Sbjct: 120 GLSNIELDHCHYWVHIPSNPAYSSLNLAAAVQVMAYEVRMAAMAGASPPARRPTESPPAS 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
             E+  F  +LE +L E G+  P    K ++  L  +F R  L   EV +LRGI++   
Sbjct: 180 VDEVEGFFQHLEQTLIEIGFLNP-SNPKLLMRRLRRLFFRAHLEIREVNILRGILTAAQ 237


>gi|300114137|ref|YP_003760712.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299540074|gb|ADJ28391.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus watsonii
           C-113]
          Length = 246

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 126/240 (52%), Gaps = 4/240 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+     NIG  ARAM    L +L LVNPR  +P  +A + ++ AD ++   
Sbjct: 3   LAKVRIVLVETTHPGNIGAAARAMRTMGLHRLYLVNPR-RFPCAEATAMASGADELLVQA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V ++L +AIA    ++  +AR+RN    VL  + +  ++ +    G+ V I+FGRE  G
Sbjct: 62  KVCTSLAQAIAGCQKVFGLSARSRNISWPVLNTRASGALVVQEALKGE-VAIVFGRENSG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+N E+   N  +  P NP + SLN++ AV +M +E    S+    ++  E ++ A+  E
Sbjct: 121 LSNFELDHCNYWVHIPSNPTYSSLNLAAAVQVMAYEIRMASMTDDFRHSGESSS-ASIDE 179

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +  F  +LE +L +  +       K ++  L  +F R  L   E+ +LRGI++   K ++
Sbjct: 180 IEGFFSHLEQTLIKIDFLNS-SNPKFLMRRLRRLFFRAHLNTPEINILRGILTAAQKKAQ 238


>gi|188582582|ref|YP_001926027.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           populi BJ001]
 gi|179346080|gb|ACB81492.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           populi BJ001]
          Length = 245

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/246 (41%), Positives = 156/246 (63%), Gaps = 2/246 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D  
Sbjct: 1   MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDRA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VF+ L EA+ DLH + ATTAR R   K V AP+EA     +RI  G+ VG++FGRER G
Sbjct: 61  KVFATLAEAVGDLHGLLATTARERGQMKRVFAPEEAMTATADRIGRGERVGLMFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKG 190
           L+N+E++L++AI++FPV   FPSLN++QAVLLM +E    + +++ +   E  + PAT+ 
Sbjct: 121 LSNDEVSLADAIVTFPVTEEFPSLNLAQAVLLMGYEWRRAAGLATLRFSGELLSPPATRE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            LLS    LE +L   G+  P EK++ +  ++  +  R  +  ++V   RG +  L +  
Sbjct: 181 ALLSLFASLEETLAGAGF-YPPEKREIIARNMRDMLHRMAMTEQDVRTFRGALRALHRRG 239

Query: 251 RQSSRR 256
            ++   
Sbjct: 240 PKTDEA 245


>gi|75675487|ref|YP_317908.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi
           Nb-255]
 gi|74420357|gb|ABA04556.1| RNA methyltransferase TrmH, group 1 [Nitrobacter winogradskyi
           Nb-255]
          Length = 403

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/248 (43%), Positives = 165/248 (66%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+  A+ ++A AD ++  V +
Sbjct: 15  GPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  + EA+AD   ++ATTAR  +  K V+AP+ AA+    +I +G +VGI+FGRER GL 
Sbjct: 75  FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192
           NEE+A+++ II++PVNP F SLN++QAVLL+ +E  +          + E++  A++ ++
Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLIGYEWFKLVTRGELPFAMPERSERASQHQM 194

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + +  R+
Sbjct: 195 QAFFDNLVAELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 253

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 254 GPAKGGVL 261


>gi|303251299|ref|ZP_07337477.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252468|ref|ZP_07534364.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649841|gb|EFL80019.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860060|gb|EFM92077.1| Uncharacterized tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 242

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 10/231 (4%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
             L  NIG  ARAM    L+ LRLV P +    E+A++ SA A  V+ + ++F + ++AI
Sbjct: 14  TSLPANIGSAARAMKTMGLSNLRLVAPLNPI-DEQAQALSAGARDVLANAQIFDSFEQAI 72

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           AD   +  T+AR R+   S++ P++   +  ER   G  V I+FGRER GLTNEE+   +
Sbjct: 73  ADCQLVIGTSARLRHLQNSLIEPRDCGKLAVERAEKG-KVAIVFGRERVGLTNEELLKCH 131

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIV----SSEKNVKEQNTPATKGELLSFLD 197
             ++FP NP + SLN++ AV L  +E     +        + + E+        L  F +
Sbjct: 132 YHLNFPTNPDYGSLNLAMAVQLASYEVRMAWLDLQKNPQIRPLVEEKDYPNTEALEHFFN 191

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + E   ++  + R       ++  L  ++ R EL   E+ LLRG++++++K
Sbjct: 192 HTERLYKQLSFIRN----DAVMLKLRRLYQRAELETNELNLLRGMLTSVEK 238


>gi|50085211|ref|YP_046721.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531187|emb|CAG68899.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 271

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 134/274 (48%), Gaps = 21/274 (7%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I++V+  L  NIG   RAM    L+QL LV P+  +P     + +A A  +++ +
Sbjct: 1   MTHVRIVMVNTTLPANIGSALRAMKTMGLSQLVLVAPK-TYPHPDIDALAAGAQDLVEKI 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIFGRERW 130
           ++   L++AI D H ++ T+AR+R     +L  + AA + ++  I   Q + I+FGRE  
Sbjct: 60  KIVDTLEQAIQDCHIVFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDR 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN----------- 179
           GLTNEE+AL+N  ++ PVN  +  LN++QA+ ++ +E    ++   + +           
Sbjct: 120 GLTNEELALANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATLAQVQNDQASSDSQKMQV 179

Query: 180 -----VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
                +          ++  F  +LE  L +  +  P +  + +   L  +F R +L R 
Sbjct: 180 TEKIEMDWDEPLVNHQQMEEFYPHLEKMLVDIEFLDP-QNPRLLPLRLRRLFGRAQLDRM 238

Query: 235 EVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           E  LLRGI S +   S    ++    L K E+S+
Sbjct: 239 EYHLLRGIFSRVQALSHGKWKK--TALDKEEQSD 270


>gi|241758643|ref|ZP_04756757.1| SpoU methylase family protein [Neisseria flavescens SK114]
 gi|241321154|gb|EER57350.1| SpoU methylase family protein [Neisseria flavescens SK114]
          Length = 295

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 25  MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLNKLTIVAPNLMATPMTENPP 84

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 85  VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 144

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 145 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 204

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 205 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 262

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 263 MQSLFGRANTQTEDIDILRGFFNTV 287


>gi|241662700|ref|YP_002981060.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|309781257|ref|ZP_07675994.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|240864727|gb|ACS62388.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
           12D]
 gi|308920078|gb|EFP65738.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 294

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 119/258 (46%), Gaps = 14/258 (5%)

Query: 2   TPYAPQ-LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSE 55
           TP  P  L+  A     +LV+     N+G  ARA+      +     LV PR  D     
Sbjct: 19  TPADPDTLRQRAVRCRFVLVETSHPGNVGSAARALKTMGFGEPGSFVLVRPREADAQSHA 78

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            A + ++ AD V+   RV  ++ EA+A      A TAR R      + P++AA  +   +
Sbjct: 79  DAVAMASGADDVLAGARVVDDIGEALAGASLTIALTARPREFGPRRIGPRDAAEEVAALL 138

Query: 116 F-SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                 V  +FG ER+GL NE +   + +   P NP + SLN+SQAV L+ +E     + 
Sbjct: 139 AAPDTTVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLA 198

Query: 175 SSEK------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIR 228
            +         V     PAT  ++    ++LE  L E G+  P +  KK++  L  +F R
Sbjct: 199 GTGTGDTRMDGVGFVGEPATAEQIDGMFEHLEQGLVEIGFLDPAQ-PKKLMPRLRRLFAR 257

Query: 229 PELMREEVFLLRGIVSTL 246
            +L  EEV +LRGI   +
Sbjct: 258 TQLEAEEVNILRGIAKRM 275


>gi|170740850|ref|YP_001769505.1| RNA methyltransferase [Methylobacterium sp. 4-46]
 gi|168195124|gb|ACA17071.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium sp.
           4-46]
          Length = 250

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 152/237 (64%), Gaps = 2/237 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +ILV+PQL ENIGM ARAM NF L++LRLV P+ GWP +  R +++ A  V+D   + 
Sbjct: 8   PAVILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGATIH 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + EAI DLH + ATTAR R   K V+ P EA   +  R  +G+ VGI+FGRER GL+N
Sbjct: 68  ATVAEAIGDLHHVLATTARERGQMKRVMGPDEAMGSVVARQAAGERVGILFGRERVGLSN 127

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-QNTPATKGELL 193
           +E++L++AI++FPV+P   SLN++Q+VLL+ +E    S +++     E ++ PA +  LL
Sbjct: 128 DEVSLADAIVTFPVDPRHASLNLAQSVLLVAYEWRRASGLATLPFDGEMRSPPAPREALL 187

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           S  + LE +L+  GYF P EK+  M+ +L  I  R  +  +++  L G +  L + +
Sbjct: 188 SLFESLEGALDAVGYF-PPEKRGGMVRNLRDILHRMAMTEQDLRSLHGALRALTRRA 243


>gi|319637892|ref|ZP_07992658.1| SpoU methylase [Neisseria mucosa C102]
 gi|317401047|gb|EFV81702.1| SpoU methylase [Neisseria mucosa C102]
          Length = 271

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTSEKPALPAYLDNIRIILTRTSHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 61  VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P+E    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRELVPELLQATNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|254522636|ref|ZP_05134691.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
 gi|219720227|gb|EED38752.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
          Length = 275

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 121/251 (48%), Gaps = 5/251 (1%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            +A     +LV  Q   N+G  ARA+    L +L LV P +    E+A   SA A+ V+ 
Sbjct: 24  PAATRLRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLG 82

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V + L EA+AD   +   TAR R        P +AA     +   G  V ++FGRER
Sbjct: 83  DAPVVATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRER 142

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTP 186
            GLTNEE+ L +A +  P +P F SLN++ AV ++ +E     + +      E   +   
Sbjct: 143 TGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA 202

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  ++ SF   L  +L+E  +       +  +  L  +F+R E   +EV LLRGI++  
Sbjct: 203 ASHEQMESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADT 261

Query: 247 DKFSRQSSRRN 257
            + +R +   +
Sbjct: 262 QRMARLAQAGS 272


>gi|103486280|ref|YP_615841.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98976357|gb|ABF52508.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 248

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 145/249 (58%), Gaps = 8/249 (3%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  +A  PVI+LV PQLGENIG  ARAM NF LT+LRLV+PRDGWP+  A  +SA AD V
Sbjct: 1   MTAAAPPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVV 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   RVF  L EA+AD   IYATT R R   K+VL P+ AA  ++ +         +FG 
Sbjct: 61  LAGARVFETLAEAVADCTDIYATTVRKRGVTKAVLTPEAAAQKVHAQP---GRSAYVFGP 117

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-----SIVSSEKNVKE 182
           ER GL  +++AL++AI++ P+NP F SLN++QAV+L+ +E  ++      +  +      
Sbjct: 118 ERSGLETDDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKHVPGDGHVALASPPEVP 177

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            + PA  GEL   + +    L++ GYF P E++   L  L +   +      ++ ++ GI
Sbjct: 178 LDPPAPHGELEELIGHFVRDLDQSGYFFPPERRDATLRALRTTLTKTGWSHNDIRMMHGI 237

Query: 243 VSTLDKFSR 251
           +  L +  R
Sbjct: 238 IVALGRAPR 246


>gi|254424488|ref|ZP_05038206.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7335]
 gi|196191977|gb|EDX86941.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7335]
          Length = 304

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 118/297 (39%), Gaps = 45/297 (15%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P  Q       I+LV P    N+G VAR M NF L+QL LV+P+  +   +A   + +AD
Sbjct: 9   PPTQADLTQIRIVLVAPAGPLNVGSVARVMKNFGLSQLYLVDPQCDYLGAEALQMAVHAD 68

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGI 123
            V+ + ++   + +A+A   +  ATTAR R     +  P+ A   L         +   +
Sbjct: 69  DVLKTAQIVPTIPKALAGCEYAIATTARTRGFNVPLDPPETALPNLLTSNPQQPIRQTAL 128

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME------------- 170
           +FG E  GL+N+E+  +   +  P +  + +LN++QAV +  +E                
Sbjct: 129 LFGPEDRGLSNQELIYAQQFLKIPTSDAYSALNLAQAVTICCYELSRVARTFCPNSTLSS 188

Query: 171 -----------------------------NSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201
                                        ++  +      E    A   E+  + ++LE 
Sbjct: 189 YPIESSLENKTPALQNTPSSAKQSESSLSSTANAPIIKEHEDQPRANLEEIERYYEHLES 248

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
            L + GY  P     + +  +  +  R      EV LLRG++  ++     S +R  
Sbjct: 249 LLLQVGYLLPHTSASR-MRKIRQLLHRASPTSHEVALLRGMIRQIEWALSHSKQRQT 304


>gi|194366519|ref|YP_002029129.1| TrmH family, group 1 RNA methyltransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|194349323|gb|ACF52446.1| RNA methyltransferase, TrmH family, group 1 [Stenotrophomonas
           maltophilia R551-3]
          Length = 256

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 5/251 (1%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A     +LV  Q   N+G  ARA+    L +L LV P +    E+A   SA A+ V+ 
Sbjct: 5   PVATRLRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLG 63

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V + L EA+AD   +   TAR R        P +AA     +   G  V ++FGRER
Sbjct: 64  DAPVVATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRER 123

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---EKNVKEQNTP 186
            GLTNEE+ L +A +  P +P F SLN++ AV ++ +E     + +    E     +   
Sbjct: 124 TGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPVVESGTGVREPV 183

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  ++ SF   L  +L+E  +       +  +  L  +F+R E   +EV LLRGI++  
Sbjct: 184 ASHEQMESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADT 242

Query: 247 DKFSRQSSRRN 257
            + +R +   N
Sbjct: 243 QRMARLAQAGN 253


>gi|167837119|ref|ZP_02464002.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis MSMB43]
          Length = 299

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 7/260 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +L++P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARAARGGFTSTRFVLIEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +    TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLGLTARSREYGPPRLAPRAAAASALQQVRTG-DIA 138

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E     
Sbjct: 139 LVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDDESAAPP 198

Query: 183 Q---NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                T A   E+     +LE +L    +  P    KK++  L  +F R  + REEV ++
Sbjct: 199 DAALGTLAQSDEIERMFVHLENALIALDFLDP-RNPKKLMSRLRRLFARTGIEREEVNIV 257

Query: 240 RGIVSTLDKFSRQSSRRNNV 259
           RGI   +   +  +  R  V
Sbjct: 258 RGIAKHILLKAGGADARAGV 277


>gi|206560519|ref|YP_002231284.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           cenocepacia J2315]
 gi|198036561|emb|CAR52458.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           cenocepacia J2315]
          Length = 244

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSN 76
           LV+P    N+G  ARA+     ++L LV PR        +A + ++ AD V+ S  V S 
Sbjct: 2   LVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVST 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA++ +H+  A TAR R      LAP+ AA   + ++ +G ++ ++FG ER GL NE 
Sbjct: 62  LGEALSGVHWSIALTARTREYGPPRLAPRAAAAQASAQVGTG-DIALVFGNERTGLANEH 120

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM----ENSIVSSEKNVKEQNTPATKGEL 192
           +   +A+   P NP + SLN++QAV ++ +E      E +   S +   E  T A   E+
Sbjct: 121 VEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAFLEQASEPSAQPPAEAGTLAQSDEI 180

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
                +LE +L    +  P    KK++  L  +F R  L REEV +LRG+   +
Sbjct: 181 ERMYVHLEHALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNILRGVAKHI 233


>gi|262369728|ref|ZP_06063056.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262315796|gb|EEY96835.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 282

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 136/276 (49%), Gaps = 17/276 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +        I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A  
Sbjct: 8   AVSAHLSHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGATD 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIF 125
           +I+ + +   L +AI D H ++ T+AR+R     +L  + AA   ++  +   Q+V ++F
Sbjct: 67  LIEQIEIVETLADAIKDCHLVFGTSARSRTIPWPLLDARPAAEKSISAVVNDQQDVAVVF 126

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------- 177
           GRE  GLTNEE+A++N  ++ PVN  +  LN++QA+ ++ +E    ++ + E        
Sbjct: 127 GREDRGLTNEELAMANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLAAVESGKDETAT 186

Query: 178 ------KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
                 ++++      T  ++  F  ++E  L E  +  P    + +   L  +F R +L
Sbjct: 187 MPVTDTESMQWDEPLVTHEQMEQFYPHIEKMLAEIEFLDPK-NPRLLPLRLRRLFGRIQL 245

Query: 232 MREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEKS 267
            R E  LLRGI S +   +  + +++N    + + +
Sbjct: 246 DRMEYHLLRGIFSRVQALNNGTWKKSNTDQTEDQSN 281


>gi|121635055|ref|YP_975300.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
 gi|161870219|ref|YP_001599389.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
 gi|218768365|ref|YP_002342877.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
 gi|120866761|emb|CAM10514.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
 gi|121052373|emb|CAM08705.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
 gi|161595772|gb|ABX73432.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
          Length = 292

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 22  MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 81

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 82  VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 141

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 142 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 201

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 202 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 259

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 260 MQSLFGRANTQTEDIDILRGFFNTV 284


>gi|299067213|emb|CBJ38410.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CMR15]
          Length = 259

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
           LV+     N+G  ARA+      +     LV PR  D      A + ++ AD V+   RV
Sbjct: 2   LVETSHPGNVGSTARALKTMGFGESGSYVLVRPREPDAQSHPDAVAMASGADDVLADARV 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGL 132
             +  EA+A    + A TAR R      + P+ AA  +   + + G  V  +FG ER+GL
Sbjct: 62  VDDFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATVAFVFGNERYGL 121

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK------NVKEQNTP 186
            NE +   + +   P NP + SLN+SQAV L+ +E     +  +         V     P
Sbjct: 122 PNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVRMALLAETGTGDTRVDGVGFVGEP 181

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT  ++     +LE  L E G+  P +  KK++  L  +F R +L  EEV +LRGI   +
Sbjct: 182 ATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMSRLRRLFARTQLEAEEVNILRGIAKRM 240


>gi|158334964|ref|YP_001516136.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305205|gb|ABW26822.1| RNA methyltransferase, TrmH family, group 1 [Acaryochloris marina
           MBIC11017]
          Length = 250

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 15/252 (5%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +       I+LV+P    N+G +AR M N  L QL LV P       +A+  S +A  V+
Sbjct: 3   EPRLASIKIVLVEPAGPLNVGSIARVMKNMGLGQLVLVKPHCNPLGPEAKQMSVHAVDVL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +    L EA+     + ATTAR R       APK+    + E         +IFG E
Sbjct: 63  YQAKTVQTLSEALVGCQRVVATTARQRRLQVVTQAPKQILPWILE-----GEAALIFGPE 117

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------ 182
             GL+NEE+  + A +  P +  + +LN++QAV +  +E  +  ++  +    E      
Sbjct: 118 DRGLSNEELYHAQAFLQIPTSSDYAALNLAQAVTICCYELRQCLLMGLDNRPTEPRIAES 177

Query: 183 ---QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
              Q   A   ++ +F   LE++L + GY  P     + +  L  +F R +L  +E+ +L
Sbjct: 178 DHLQVELAPFQQMEAFYQALEVALLDIGYLHPHTATAR-MQKLRQLFNRSQLSTQELAML 236

Query: 240 RGIVSTLDKFSR 251
           RG++  +   ++
Sbjct: 237 RGMIRQVHWKTQ 248


>gi|207722898|ref|YP_002253332.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588082|emb|CAQ18662.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 287

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 114/251 (45%), Gaps = 13/251 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62
           L+  A     +LV+     N+G  ARA+      +     LV PR  D      A + ++
Sbjct: 19  LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            AD V+   RV  ++ EA+A      A TAR R      + P+  A  +   + S    V
Sbjct: 79  GADDVLAGARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVVAEEVAALLASPDATV 138

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178
             +FG ER+GL N+ +   + +   P NP + SLN+SQAV L+ +E     +  +     
Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198

Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
               V     PAT  ++     +LE  L E G+  P +  KK++  L  +F R +L  EE
Sbjct: 199 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257

Query: 236 VFLLRGIVSTL 246
           V +LRGI   +
Sbjct: 258 VNILRGIAKRM 268


>gi|167581379|ref|ZP_02374253.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis TXDOH]
          Length = 306

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 23  ARAARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 82

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            AD V+ S  V   L +A+  + +  A TAR+R      LAP+ AA    +++ +G ++ 
Sbjct: 83  GADDVLASAHVVPTLADALNGVQWSLALTARSREYGPPRLAPRAAAASALQQVRTG-DIA 141

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            +FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E     
Sbjct: 142 FVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEPATPP 201

Query: 183 QNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
                  A   E+     +LE +L    +  P    KK++  L  +F R  L REEV ++
Sbjct: 202 DAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREEVNIV 260

Query: 240 RGIVSTL 246
           RGI   +
Sbjct: 261 RGIAKHI 267


>gi|85715191|ref|ZP_01046175.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A]
 gi|85698106|gb|EAQ35979.1| RNA methyltransferase TrmH, group 1 [Nitrobacter sp. Nb-311A]
          Length = 407

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 108/248 (43%), Positives = 165/248 (66%), Gaps = 2/248 (0%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GP +IL++PQLGENIGM ARAM NF LT+LR+VNPRDGWP+  A+ ++A AD ++  V +
Sbjct: 15  GPTVILIEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNIAAQRAAAGADHILSRVEL 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  + EA+AD   ++ATTAR  +  K V+AP+ AA+    +I +G +VGI+FGRER GL 
Sbjct: 75  FDTVAEAVADCTLLFATTARAHDQAKPVVAPEAAAVEATAQIAAGGHVGILFGRERAGLL 134

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGEL 192
           NEE+A+++ II++PVNP F SLN++QAVLLM +E  +          + E++  A++ ++
Sbjct: 135 NEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTRGELPFAMPERSERASQHQM 194

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + +  R+
Sbjct: 195 QAFFDNLVSELDKVEFLRPPEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE-GRK 253

Query: 253 SSRRNNVL 260
              +  VL
Sbjct: 254 GPAKGGVL 261


>gi|220935230|ref|YP_002514129.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219996540|gb|ACL73142.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 247

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 9/249 (3%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      I+L+      NIG  ARAM    L+ LRLV+P   +PS +A + ++ AD ++ 
Sbjct: 2   NVLDRLRIVLIQTSHPGNIGASARAMKTMGLSDLRLVSP-VRYPSAEATAMASGADDLLA 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V+ +L EA+     +  T+AR R+     L P+EAA  L E     + V ++FGRE+
Sbjct: 61  GTPVYEDLDEALTGCRLVMGTSARQRSLRWPQLNPREAAAALIEAAAQ-RPVALLFGREQ 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK------NVKEQ 183
            GL+NEE+   +++++ P N  + SLN++ AV ++ +E    ++           ++  +
Sbjct: 120 SGLSNEELDRCHSLVTIPANEAYSSLNLAAAVQVLSYELRMAALERQAPAVDTSADLAPE 179

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           + PA+   L  F  +LE +L    +  P    + +L  L  ++ R      EV +LRGI+
Sbjct: 180 DQPASAEALEDFYAHLERALIHLDFLDP-NNPRHLLRRLRRLYGRAVPTVSEVNILRGIL 238

Query: 244 STLDKFSRQ 252
           +  +K  R+
Sbjct: 239 TAAEKGPRR 247


>gi|94497531|ref|ZP_01304100.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94422948|gb|EAT07980.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 357

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/236 (40%), Positives = 139/236 (58%), Gaps = 4/236 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
               PVI+LV PQLGENIG  ARAM NF LT++RLV+PRDGWP+  A  ++A AD V+D 
Sbjct: 120 PTPTPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVSPRDGWPNPDAGPAAAGADVVLDG 179

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +V+  L +A+AD   +YATT R R   K V+ P+EAA    E   +      +FG ER 
Sbjct: 180 AQVYETLADAVADCAHVYATTVRKRGVTKPVVTPEEAA---REIHGATGRSAFVFGPERS 236

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL  +++AL+  I++ P+NP F SLN++QAV+L  +E  + + ++ +  V +   PA + 
Sbjct: 237 GLETDDVALARKILTVPINPDFGSLNLAQAVILCAYEWSKQATLA-QPTVTDLGEPAPQD 295

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           EL   +   E  LE  GYF P ++       L ++  +P     EV  LRG++S L
Sbjct: 296 ELEGMIGQFETLLEGAGYFFPPDRAPATKRTLRNLLTKPGWNHLEVRTLRGVLSAL 351


>gi|296534805|ref|ZP_06897156.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296264869|gb|EFH11143.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 278

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/263 (33%), Positives = 143/263 (54%), Gaps = 5/263 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
             + P+I+LV PQL ENIG  ARAM N  L  LRLV PRDGWP E+A   S+ A  ++D+
Sbjct: 14  PGESPIIVLVRPQLAENIGSTARAMANGGLFHLRLVAPRDGWPQERAWYVSSGAQRILDA 73

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRER 129
             V   + +A+AD H ++AT  R R+    V   + AA  L +          ++FG ER
Sbjct: 74  ATVHETVADAVADCHRVFATCPRPRHVVIPVCTARGAAEELVDICQTRALRSAVLFGPER 133

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPA 187
            GL N+++A ++ ++ +P+NP   SLN++QAV+++ +E    ++  +     +  +   A
Sbjct: 134 AGLENDDMACADTLVRYPLNPDHMSLNLAQAVMILAYEWWNAAVDRTPPRQLMTNETHVA 193

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           TKGEL +FL+ L   L+  G+   + K+  M+ +L   F R E+  +E+  L G+V+ L 
Sbjct: 194 TKGELETFLNRLVSELDASGFLDNLPKRPGMVRNLRHWFQRGEVTEQELRTLHGVVTELS 253

Query: 248 --KFSRQSSRRNNVLLQKTEKSE 268
             +  R      +  L   ++ E
Sbjct: 254 RGRMRRGRPEAQDPALPWAQEQE 276


>gi|190575201|ref|YP_001973046.1| putative SpoU family tRNA/rRNA methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|190013123|emb|CAQ46755.1| putative SpoU-family tRNA/rRNA methyltransferase [Stenotrophomonas
           maltophilia K279a]
          Length = 256

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 121/251 (48%), Gaps = 5/251 (1%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            +A     +LV  Q   N+G  ARA+    L +L LV P +    E+A   SA A+ V+ 
Sbjct: 5   PAATRLRFVLVGTQHPGNMGAAARALKTMGLARLVLVAP-EKPLDEEAFRRSAGAEDVLG 63

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V + L EA+AD   +   TAR R        P +AA     +   G  V ++FGRER
Sbjct: 64  DAPVVATLAEAVADCRLVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALVFGRER 123

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---QNTP 186
            GLTNEE+ L +A +  P +P F SLN++ AV ++ +E     + +      E   +   
Sbjct: 124 TGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQLLGAQPAADAEPGFREQA 183

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  ++ SF   L  +L+E  +       +  +  L  +F+R E   +EV LLRGI++  
Sbjct: 184 ASHEQMESFFAQLGDTLDEIDF-HKGRAPESAMRKLRRLFLRSEPSEQEVRLLRGILADT 242

Query: 247 DKFSRQSSRRN 257
            + +R +   +
Sbjct: 243 QRMARLAQAGS 253


>gi|73540818|ref|YP_295338.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
 gi|72118231|gb|AAZ60494.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
          Length = 314

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 122/267 (45%), Gaps = 14/267 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVR 72
              +LV+     N+G VARA+       L LV+PR+        A + ++ AD V+    
Sbjct: 49  VRFVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPGVREHPDAVAMASGADDVLAGAV 108

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERW 130
           +  +++ A+       A TAR R      L P++AA    E + +  G  +  +FG ER+
Sbjct: 109 IVDSIEAALEGATQTVAMTARQREFGPPRLLPRDAAARGAESLAARAGDEIAFVFGNERY 168

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK------NVKEQN 184
           GL N+ +    A+   P NP++ SLN++QAV L+ +E     +  ++       N+    
Sbjct: 169 GLPNDVVERCVAVTHIPANPVYASLNLAQAVQLIAYEMRLALLDRAQAAPDDSGNIGYAG 228

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PAT  ++ S   +L+  LE  G+  P    +K++  L  +  R  L REEV +LRGI  
Sbjct: 229 EPATAEQVESMFGHLQQGLEAIGFLDPA-NPRKLMTRLRRLLARAGLEREEVNILRGIAK 287

Query: 245 TL---DKFSRQSSRRNNVLLQKTEKSE 268
            +    +  R    ++       ++  
Sbjct: 288 HMLIAVRGGRTKPEQSGPSTPARQEEH 314


>gi|225076736|ref|ZP_03719935.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
           NRL30031/H210]
 gi|224951934|gb|EEG33143.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
           NRL30031/H210]
          Length = 304

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 34  MTSEKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 93

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L +A+AD     A T+R R     +
Sbjct: 94  VFNPDDVQSFALPEESFILASGAADVLENATIAASLDKALADTTIACALTSRRREITAPL 153

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 154 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 213

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 214 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 271

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 272 MQSLFGRANTQTEDIDILRGFFNTV 296


>gi|91225152|ref|ZP_01260374.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|91190095|gb|EAS76366.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
          Length = 215

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 5/216 (2%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    L QL LV+P+     E+  + +A A  +  + ++   L+EA+ D   +  ++AR+
Sbjct: 1   MKVMGLNQLVLVDPQCEV-DEQTLALAAGAGDIAQNAKIVGTLEEAVEDCGLVVGSSARS 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R     +L P+E              V ++FGRER GLTNEE+   +  +  P NP + S
Sbjct: 60  RTLEWPMLEPRECGEKFAVEGRK-HPVALVFGRERTGLTNEELQKCHYHVCIPANPEYSS 118

Query: 155 LNISQAVLLMVWECMENS--IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212
           LN++ AV  + +E       +  S+ +  E        EL  F ++LE  + E  +    
Sbjct: 119 LNLAMAVQTLSYEVRVAHLNLEQSQFSPNESEEYPRHRELEMFFEHLEKVMVETQFINK- 177

Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           E+  ++++ L  +F R     +E+ +LRG++++++K
Sbjct: 178 EQPGQVMNKLRRLFSRARPETQEINILRGVLTSIEK 213


>gi|15677213|ref|NP_274366.1| putative RNA methylase [Neisseria meningitidis MC58]
 gi|7226592|gb|AAF41722.1| putative RNA methylase [Neisseria meningitidis MC58]
 gi|261392376|emb|CAX49916.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
 gi|308389465|gb|ADO31785.1| putative RNA methylase; SpoU family [Neisseria meningitidis
           alpha710]
 gi|316984154|gb|EFV63132.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Neisseria meningitidis H44/76]
 gi|319410611|emb|CBY90980.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
           2594]
 gi|325128461|gb|EGC51342.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           N1568]
 gi|325130415|gb|EGC53179.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           OX99.30304]
 gi|325132458|gb|EGC55151.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M6190]
 gi|325134417|gb|EGC57062.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M13399]
 gi|325136150|gb|EGC58758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M0579]
 gi|325138232|gb|EGC60801.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           ES14902]
 gi|325140433|gb|EGC62954.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           CU385]
 gi|325142543|gb|EGC64943.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           961-5945]
 gi|325144517|gb|EGC66816.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240013]
 gi|325198493|gb|ADY93949.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           G2136]
 gi|325200032|gb|ADY95487.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           H44/76]
 gi|325201943|gb|ADY97397.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240149]
 gi|325205885|gb|ADZ01338.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M04-240196]
 gi|325208306|gb|ADZ03758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           NZ-05/33]
          Length = 271

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 61  VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
 gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 3/243 (1%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   ++LV+PQ   NIG V RAM NF  +QL LVNP   + +  AR  + +A  +++   
Sbjct: 4   QQITVVLVEPQGPLNIGSVCRAMMNFGFSQLCLVNPCTTFNNLDARKMALSALPILEKAV 63

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V   L +A+ + H  + TT R     +  L+P++    L E   + Q   ++ GRE  GL
Sbjct: 64  VVDTLAQALKNCHLAFGTTRRFGKYRQDFLSPEDFGRTLAEEPDTNQ-CALVMGREDHGL 122

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
              E+ L    ++ P    + S+N+S A  L++++       +   N      PAT  EL
Sbjct: 123 YTSELELCQRFVTIPTENAYGSMNLSHATALLLYQASMALGRTIPLNTG-STPPATSHEL 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
               D++  SL +  +    +    +L     IF R  L R EV ++RG++  +D    +
Sbjct: 182 AGMYDHMTKSLCDIDFLN-TQNPDHLLRTFRRIFGRAGLDRREVAIIRGLMGRIDWTESE 240

Query: 253 SSR 255
             +
Sbjct: 241 RKK 243


>gi|254673050|emb|CBA07666.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           alpha275]
          Length = 271

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 61  VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTTNRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|289208012|ref|YP_003460078.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
           K90mix]
 gi|288943643|gb|ADC71342.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
           K90mix]
          Length = 245

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 8/246 (3%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++       ++LV      NIG  ARAM    +T L LV P + +P   A + ++ AD +
Sbjct: 1   MEQCLGRVRVVLVGTTHPGNIGSAARAMKAMGITDLVLVAP-ERFPHADATALASGADDL 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   RV  +L  A++D  ++  T+AR R +   VL P  AA  +  +   G  V ++FGR
Sbjct: 60  LAGARVVDDLAAAVSDCVWVIGTSARLRTHSVPVLGPDIAAEQVLTQAAEG-PVALVFGR 118

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-----SSEKNVKE 182
           E  GLTN E+   NA +  P  P F SLN++ +V +M +     ++      ++ +    
Sbjct: 119 EHSGLTNAELDHCNAFVQIPTVPNFSSLNLAGSVQVMTYALRMAALAGESARTAAEPEDA 178

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           ++  A++ E+     + E +L       P E  + ++  L  +++R  L   EV +LRGI
Sbjct: 179 RDPLASQAEMEGLFSHFEKALTTIEVLDP-ENPRHLMRRLRHLYMRAGLSASEVRMLRGI 237

Query: 243 VSTLDK 248
           ++  ++
Sbjct: 238 LTHTER 243


>gi|187479053|ref|YP_787077.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
 gi|115423639|emb|CAJ50179.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
          Length = 267

 Score =  268 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 14/255 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             I+V P    N+G  ARA+      +L LV+PR  D     +A + ++ A  V+++ R+
Sbjct: 9   RFIMVQPSHPGNVGSAARAIKTMGFAELVLVDPRLPDMTHQPEAVALASGAADVLENARI 68

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWG 131
            + L+EA+A +   +A TAR R+        ++AA +  E +       V I+ G ER G
Sbjct: 69  CATLEEALAPVTLAFALTARVRDLGPPPCDIRQAATLSREHLDQKPDGCVAIVLGTERSG 128

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---------EKNVKE 182
           LTNE+I L   I   P NP + SLN++QA+ L  WE     + ++               
Sbjct: 129 LTNEQIGLCQRICHIPANPEYSSLNVAQALQLAAWELRYALLEAAGATLLPPSKAHQPDP 188

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
              PA+   + + L + E +L    +  P    KK++  +  +F R EL R+E+ ++RG+
Sbjct: 189 GAQPASSEAVQAMLAHWEQALVAVEFLNPAH-PKKLMPRMRHLFTRAELSRDEIDMMRGV 247

Query: 243 VSTLDKFSRQSSRRN 257
            + +   + ++  R 
Sbjct: 248 CTAMLDIAGRAGPRQ 262


>gi|94310024|ref|YP_583234.1| RNA methyltransferase TrmH [Cupriavidus metallidurans CH34]
 gi|93353876|gb|ABF07965.1| putative RNA methyltransferase (TrmH family) [Cupriavidus
           metallidurans CH34]
          Length = 289

 Score =  268 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 18/260 (6%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ----LRLVNPRDG--WPSEKA 57
            A  L +      ++LV+     N+G VARA+           L LV+PR+        A
Sbjct: 17  AASDLSDIFAHVRVVLVETSHPGNVGSVARAIKTMGFGHVPGSLVLVSPREPGVVSHPDA 76

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RI 115
            + ++ AD V+ S  +  +++ A+A   F  A TAR R      L P+ A          
Sbjct: 77  VAMASGADDVLASATIVDSIEAALAGTAFTVAMTARQREFGPPRLLPRAAVAKARSVLEA 136

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V  +FG ER+GL N+ +   +A+   P NP++ SLN++QAV L+ +E     + +
Sbjct: 137 DPATTVAFVFGNERFGLPNDAVLRCSAVTHIPANPVYASLNLAQAVQLIAYEMRLALLEA 196

Query: 176 SEK---------NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
            E          ++     PAT  ++ +   +L+  L   G+  P    +K++  L  +F
Sbjct: 197 QETAGGLPDVAGDIGYAGDPATTEQIEAMFGHLQAGLAAIGFLDPA-NPRKLMPRLRRLF 255

Query: 227 IRPELMREEVFLLRGIVSTL 246
            R  L REEV +LRGI   +
Sbjct: 256 ARTGLEREEVNILRGIAKRM 275


>gi|313668483|ref|YP_004048767.1| SpoU methylase family protein [Neisseria lactamica ST-640]
 gi|313005945|emb|CBN87402.1| SpoU methylase family protein [Neisseria lactamica 020-06]
          Length = 271

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 124/265 (46%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           M    P L        I+L       NIG  ARAM    L +L +V P            
Sbjct: 1   MASEKPALPAYLDNIRIVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPMTENPP 60

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 61  VFNPDDVQSFALPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE    N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAAQRGEQVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  +++ G+F      ++++  
Sbjct: 181 QVVCYEIFSQT-DSPMTHLQQEDHAATHEQIKGMVAHMESVMDDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|170076970|ref|YP_001733608.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884639|gb|ACA98352.1| rRNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7002]
          Length = 250

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 8/248 (3%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S     I++V+P    N+G +AR M N  L QL LVNP      ++A   + +    ++ 
Sbjct: 3   SLTHIRIVVVEPAGALNLGSIARVMKNMGLGQLFLVNPHCNHLGQEAFLMAVHGREFLER 62

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V  +L  A+       ATT   R+    V  PK A     E     Q   +IFGRE  
Sbjct: 63  AVVVPDLTTALTGCKKAIATTGLQRSLPMPVETPKAALPWFLE---DDQPSALIFGREDH 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP---- 186
           GL+N E+  +  ++  P    + SLN++QAV +  +E    +        KE+  P    
Sbjct: 120 GLSNSELNQAQRLVCIPTGDAYTSLNLAQAVAVCSYELRSLATEQQGFPPKEKAAPLPDL 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A   EL  +  +LE  L + G+  P     + ++   +++ R      EV +LRGI+  +
Sbjct: 180 ADLSELEGYYQHLERVLLQVGFLYPHTSTSR-METFRNLYHRASPSSREVAMLRGILRQV 238

Query: 247 DKFSRQSS 254
           +     ++
Sbjct: 239 EWAIANAA 246


>gi|319794743|ref|YP_004156383.1| RNA methyltransferase, trmh family, group 1 [Variovorax paradoxus
           EPS]
 gi|315597206|gb|ADU38272.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           EPS]
          Length = 247

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 4/244 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             IL+      N+G  ARAM       L LV PR  +    E+    ++ A  V+ + R+
Sbjct: 4   RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPRWANVLRREETIQRASGALDVLTNARI 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+  +  + AT    R+       P+E    L +     Q+V  +FG ER+G+ 
Sbjct: 64  VETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKE-GDAQHVAFLFGSERFGMR 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NE++   N  +S P +P F SLN+  A+ ++ +E          ++       A    + 
Sbjct: 123 NEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWRLALGGYEVRDATAPVQAADAQSVA 182

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
             LD+ E SL + G+  P    KK++  L  +F R +   EE+ +LRGI   +   ++  
Sbjct: 183 GMLDHWERSLVDIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMTDTAKGP 241

Query: 254 SRRN 257
              +
Sbjct: 242 KGGS 245


>gi|217970682|ref|YP_002355916.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
 gi|217508009|gb|ACK55020.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
          Length = 245

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 3/243 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     ++L       NIG  ARAM    L +L LV P + +P E A + ++ A  ++D+
Sbjct: 6   ALDRIRVVLSRTTHPGNIGAAARAMKTMGLRELWLVAP-ESFPDEVATARASGAADLLDA 64

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV   L+EA+AD  F  A TAR R      L  ++AA+ L  R   G  V ++FG E  
Sbjct: 65  ARVVGTLEEALADTVFSAALTARRRELSLPRLQARDAALELVRRTQDGA-VALVFGNETS 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLTNEE AL +  ++ P +  F SLN+  AV ++ +E    ++  +      Q  PAT  
Sbjct: 124 GLTNEEAALCSLPVTIPTDAGFSSLNLGAAVQVLAYELRMAALGDAAAPADPQPEPATHA 183

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +   F+ +LE ++   G+  P    K++L  +  +F R  L REEV LLRG+++T +   
Sbjct: 184 DFEGFMAHLERAVTASGFHDPA-NPKRLLPRMRRLFNRVRLEREEVALLRGMLTTFETPR 242

Query: 251 RQS 253
           R+ 
Sbjct: 243 RRG 245


>gi|95929632|ref|ZP_01312374.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
           684]
 gi|95134329|gb|EAT15986.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
           684]
          Length = 261

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 125/255 (49%), Gaps = 4/255 (1%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P      + A    I+LV+PQ   NIG V RAM NF  + LRLVNP+     ++AR  + 
Sbjct: 2   PENQHNPDIAAQLAIVLVEPQGPLNIGSVCRAMGNFGFSDLRLVNPQTDHLRQEARQMAV 61

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A  V++S  ++S+L+EA+    + + TT R  R   +      +AA  +        + 
Sbjct: 62  KAGYVLESATIYSSLEEALHGCQYAFGTTRRFGRYRDRDDFLYPDAAAQMIAGFDHDTHT 121

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            ++FGRE  GL NEE+ L    ++ P     PS+N++Q+V L ++E  +  + +  + +K
Sbjct: 122 ALVFGREDCGLLNEELDLCQRFLTIPTCDAMPSMNLAQSVSLCLYEVSKQGLEARGELLK 181

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
                A   +  S L +++ +L    Y  P +    +L     +F +  L   +V +LRG
Sbjct: 182 PN--LAEIDQTESMLQHMKETLTRIDYLDP-QNPDHILRSFRRLFGKNGLTDRDVRILRG 238

Query: 242 IVSTLDKFSRQSSRR 256
           + S +D+   +  +R
Sbjct: 239 LWSRIDRVQLELEKR 253


>gi|92117174|ref|YP_576903.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14]
 gi|91800068|gb|ABE62443.1| RNA methyltransferase TrmH, group 1 [Nitrobacter hamburgensis X14]
          Length = 410

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/251 (43%), Positives = 166/251 (66%), Gaps = 2/251 (0%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A GP +ILV+PQLGENIGM ARAM NF LT+LR+VNPRDGWP+  A+ ++A AD ++  
Sbjct: 12  DAVGPTVILVEPQLGENIGMAARAMGNFALTRLRIVNPRDGWPNVAAQRAAAGADHILKH 71

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V +F  ++ A+AD   + ATTAR  +  K V+AP+ AA     +I +G +VGI+FGRER 
Sbjct: 72  VELFDTVEAAVADCTLLLATTARAHDQAKPVVAPEAAAAEATVQIAAGGHVGILFGRERA 131

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
           GL NEE+A+++ II++PVNP F SLN++QAVLLM +E  +    ++    + E++  A++
Sbjct: 132 GLLNEEVAMADRIITYPVNPGFASLNLAQAVLLMGYEWFKLVTRAALPFAMPERSERASQ 191

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++ +F D L   L++  + RP EK+  ML +L +IF R E  ++++  L G+V  + + 
Sbjct: 192 HQMQAFFDNLVSELDKVEFLRPAEKRDTMLVNLRNIFTRMEPTKQDMHTLHGVVMAIAE- 250

Query: 250 SRQSSRRNNVL 260
            R+   +  VL
Sbjct: 251 GRKGPAKGGVL 261


>gi|194289317|ref|YP_002005224.1| tRNA:cm32/um32 methyltransferase (trmet(xm32)) [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223152|emb|CAQ69157.1| tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 272

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 6/250 (2%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARS 59
           T   P   ++      +LV+     N+G VARA+       L LV+PR+        A +
Sbjct: 10  TAMPPDGGDAFGRVRFVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPEVLRHPDAVA 69

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            ++ AD V+ +  +   +  A+A      A TAR R      L P+ AA    + +    
Sbjct: 70  MASGADDVLAAAVIVDGVDAALAGAALTVAMTARQREFGPPRLLPRAAAARARQTLGGSG 129

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-- 177
           +V  +FG ER+GL NE +   NA+   P NP + SLN++QAV L+ +E     + ++   
Sbjct: 130 DVAFVFGNERYGLPNEVVERCNAVTHIPANPAYASLNLAQAVQLVAYEMRLTLLDAAPDA 189

Query: 178 -KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
             N+     PAT  ++ +   +L+  LE  G+  P    +K++  L  +  R  L REEV
Sbjct: 190 GANIGYAGEPATAEQVEAMFGHLQTGLEAIGFLDP-SNPRKLMTRLRRLLARSGLEREEV 248

Query: 237 FLLRGIVSTL 246
            +LRGI   +
Sbjct: 249 NILRGIAKHM 258


>gi|300704468|ref|YP_003746071.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
 gi|299072132|emb|CBJ43464.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 287

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 13/251 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62
           L+  A     +LV+     N+G  ARA+      +     LV PR  D      A + ++
Sbjct: 19  LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            AD V+   RV  ++ EA+A      A TAR R      + P+ AA  +   + S    V
Sbjct: 79  GADDVLAGARVVDDIGEALAGASLTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 138

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178
             +FG ER+GL N+ +   + +   P NP + SLN+SQAV L+ +E     +  +     
Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198

Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
               +     PAT  ++     +LE  L E G+  P +  KK++  L  +F R +L  EE
Sbjct: 199 RVDGIGFVGEPATAEQIDGMFAHLERGLVEIGFLDPAQ-PKKLMPRLRRLFARTQLEAEE 257

Query: 236 VFLLRGIVSTL 246
           V +LRGI   +
Sbjct: 258 VNILRGIAKRM 268


>gi|16331860|ref|NP_442588.1| hypothetical protein slr0120 [Synechocystis sp. PCC 6803]
 gi|1208490|dbj|BAA10658.1| slr0120 [Synechocystis sp. PCC 6803]
          Length = 240

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 124/240 (51%), Gaps = 12/240 (5%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           +PQ   N+G +ARAM N  L +L LVNPR  + S +A++ + +A  V+   +V  +L  A
Sbjct: 2   EPQGERNVGAIARAMKNMGLEELILVNPRCDYRSVEAQTMAVHAKDVLAQAKVVDDLATA 61

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           + D   I AT+AR R     +  P++A   L   +       ++FGRE  GLTNEE+  +
Sbjct: 62  LGDRQRIIATSARERILQSPMETPRQALPWL---LAPNLKSALVFGREDSGLTNEELNQA 118

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--------TPATKGEL 192
           +  +  PV+P +PSLN+SQAV++  +E  + S+     N    +          AT  +L
Sbjct: 119 HRFVRIPVHPQYPSLNLSQAVMVCTYELYQASLAMETNNQVPGDRLEDGSTMPLATNAQL 178

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            S+  +LE +L       P   + K +     I+ R  L  EEV LLRGI+  +D  ++Q
Sbjct: 179 DSYCQHLEKTLLNIEVLYPHTARSK-MAKFRRIYQRAALNSEEVALLRGILGQIDWLAQQ 237


>gi|325204341|gb|ADY99794.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240355]
          Length = 271

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPR 49
           MT   P L        IIL       NIG  ARAM    L +L +V           NP 
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 50  DGWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
              P         E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 61  VFHPDDVQSFVLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE    N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEAQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    + +    ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 181 QVVCYEIFSQTDM-PMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|282897430|ref|ZP_06305432.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
 gi|281198082|gb|EFA72976.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
          Length = 245

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 121/244 (49%), Gaps = 4/244 (1%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +++ +   +ILV+P    N+G +AR M NF L  L LVNP+    S ++   + +A  ++
Sbjct: 5   KSALEKIKVILVEPAGCLNLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEIL 64

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++ R+  NL  A+A      AT  R+ N    + +P+ A   L     S +  G+IFGRE
Sbjct: 65  ETARIVDNLTTALAGCDRAIATIGRDYNGELPIESPRHALPWLLGE--SEKPGGLIFGRE 122

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GLTN+EI  +  ++  P +P + SLN++ AV +  +E    S+++ E         AT
Sbjct: 123 DRGLTNQEINYAQKLVFIPTSPEYISLNLATAVSICCYEL-SQSLMTMETGKMPTRNIAT 181

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L S+   LE  L   GY  P     + ++    ++ R EL   EV +LRGI+  +  
Sbjct: 182 LDMLESYYQELESLLLSIGYLYPHTASSR-MEKFRHLYNRSELTTTEVAMLRGILKQVQW 240

Query: 249 FSRQ 252
             + 
Sbjct: 241 AIKN 244


>gi|260223171|emb|CBA33466.1| hypothetical protein Csp_B19200 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 286

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 26/269 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             IL++     N+G  ARAM       L LV PR  WP+    E+    ++ A  V+D  
Sbjct: 11  RFILINTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLDKC 68

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER----------------- 114
           R+   L EA+  +  + AT    R+       P+E   VL+++                 
Sbjct: 69  RIVETLDEALDGITHLCATAMTPRDFGPPTTTPREHFEVLSKQELLAHIPSAPGADLMSE 128

Query: 115 --IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 Q +G +FG ER+G+ NE++   +  +S P NP F SLNI  A+ ++ +E     
Sbjct: 129 SSPKGQQGIGFLFGSERFGMRNEDVYRCHVCLSIPSNPSFGSLNIGAALQVIAYEWRLAL 188

Query: 173 IVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
                      +  A   ++   L +LE SL   G+  P    KK++  L ++F R ++ 
Sbjct: 189 GGFGVHAATTPSHLADAAQVTGMLTHLEQSLVHLGFLDPAS-PKKLMPRLNALFNRAQVT 247

Query: 233 REEVFLLRGIVSTLDKFSRQSSRRNNVLL 261
           +EE+ +LRGI   + +   QS  R+  L+
Sbjct: 248 QEEIHILRGIAKAILQQGPQSPARSADLV 276


>gi|254670560|emb|CBA06425.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           alpha153]
          Length = 271

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           MT   P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MTTLKPALPAYLDNIRIILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+++  + ++L EA+AD     A T+R R     +
Sbjct: 61  VFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALADTTIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLIRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|207743497|ref|YP_002259889.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|206594895|emb|CAQ61822.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 287

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 116/251 (46%), Gaps = 13/251 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62
           L+  A     +LV+     N+G  ARA+      +     LV PR  D      A + ++
Sbjct: 19  LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 78

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            AD V+ S RV  ++ EA+A      A TAR R      + P+ AA  +   + S    V
Sbjct: 79  GADDVLASARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 138

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178
             +FG ER+GL N+ +   + +   P NP + SLN+SQAV L+ +E     +  +     
Sbjct: 139 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 198

Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
               V     PAT  ++     +LE  L E G+  P  K KK++  L  +F R +L  EE
Sbjct: 199 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEE 257

Query: 236 VFLLRGIVSTL 246
           V +LRGI   +
Sbjct: 258 VNILRGIAKRM 268


>gi|83748230|ref|ZP_00945256.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
 gi|83725071|gb|EAP72223.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
          Length = 326

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 116/251 (46%), Gaps = 13/251 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPR--DGWPSEKARSSSA 62
           L+  A     +LV+     N+G  ARA+      +     LV PR  D      A + ++
Sbjct: 58  LRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPDAQSHPDAVAMAS 117

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            AD V+ S RV  ++ EA+A      A TAR R      + P+ AA  +   + S    V
Sbjct: 118 GADDVLASARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVAAEEVAALLASPDATV 177

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK--- 178
             +FG ER+GL N+ +   + +   P NP + SLN+SQAV L+ +E     +  +     
Sbjct: 178 AFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLIAYEVRMALLADTGTGDT 237

Query: 179 ---NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
               V     PAT  ++     +LE  L E G+  P  K KK++  L  +F R +L  EE
Sbjct: 238 RIDGVGFVGEPATAEQIDGMFAHLERGLVEIGFLDPA-KPKKLMPRLRRLFARTQLEAEE 296

Query: 236 VFLLRGIVSTL 246
           V +LRGI   +
Sbjct: 297 VNILRGIAKRM 307


>gi|323699259|ref|ZP_08111171.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio sp.
           ND132]
 gi|323459191|gb|EGB15056.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           desulfuricans ND132]
          Length = 252

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 123/247 (49%), Gaps = 3/247 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L  P+  ENIG  ARA  N  +++L +V+P +    +    ++A+A  ++ S R+  
Sbjct: 6   VVVLFRPKYPENIGSAARACLNMGVSRLVVVDPYNFNMDKALPLATAHARHILTSARIVD 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+     ++ TTAR     K ++ P+  A V+++R+ +G  V ++FG E  GLTNE
Sbjct: 66  TLAQAVEGCTAVFGTTARTGGWRKGIMNPETLANVVDDRLRTGGRVAVVFGPEDKGLTNE 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKGELLS 194
           E ++ + +++ P +    SLN++QAV+++++EC + S+      +   +  P T  E  +
Sbjct: 126 ETSVCSGLVTIPTSREDTSLNLAQAVVVVLYECFKRSLAGPFVPDGPPEERPTTIKEQEA 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS-RQS 253
               L+ +L    +    +     +  +   F +  L R E  LL G+   +  F  +  
Sbjct: 186 LFGNLQETLLAIDFL-KDDNPDYWMLPVRRFFSKINLKRNEFNLLMGVCRQVRWFVDKYG 244

Query: 254 SRRNNVL 260
            +     
Sbjct: 245 PQAGGGA 251


>gi|91789152|ref|YP_550104.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91698377|gb|ABE45206.1| RNA methyltransferase TrmH, group 1 [Polaromonas sp. JS666]
          Length = 268

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 12/249 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             +L++     N+G  ARAM       L LV PR  +    E+    ++ A  V+ + R+
Sbjct: 4   RFVLINTSHAGNVGAAARAMKVMGFDDLVLVAPRWANVLNREETIQRASGALDVLKNARI 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE---------RIFSGQNVGII 124
            + L EA+  +  + AT    R+      AP+E    L           +     +V  +
Sbjct: 64  VATLDEALDGMSHLCATAMTPRDFGPPTRAPREHFSKLLSNDEPSSPENKGLQPDSVAFL 123

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FG ER+G+ N+++   +  +S P +P F SLN+  AV L+ ++  +     + +    + 
Sbjct: 124 FGSERFGMQNDDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWRQALGGFAVQPATPEP 183

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             A   E+   L + E +L + G+  P    KK++  L  +F R +L  EE+ +LRG+  
Sbjct: 184 KLADAAEVAGMLGHWEEALTDIGFLDPAS-PKKLMPRLNQLFNRAQLSPEEIHILRGVAK 242

Query: 245 TLDKFSRQS 253
            + + + ++
Sbjct: 243 AMSRTANKA 251


>gi|239816538|ref|YP_002945448.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           S110]
 gi|239803115|gb|ACS20182.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           S110]
          Length = 243

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 6/244 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             IL+      N+G  ARAM       L LV PR  +    E+    ++ A  V+ + R+
Sbjct: 4   RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPRWANVLRREETIQRASGALDVLTNARI 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+  +  + AT    R+       P+E    L ++    Q+V  +FG ER+G+ 
Sbjct: 64  VETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKQGE--QHVAFLFGSERFGMR 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NE++   N  +S P +P F SLN+  A+ ++ +E          ++       A    + 
Sbjct: 122 NEDVYRCNVALSIPTDPKFGSLNLGAAIQVVAYEWRLALGGYEVRDATAPIEAADAKAVA 181

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
             L++ E SL E G+  P    KK++  L  +F R +   EE+ +LRGI   +   +R  
Sbjct: 182 GMLEHWERSLVEIGFLDPA-APKKLMPRLQQLFNRAQPTPEEIHILRGIAKAMADAAR-G 239

Query: 254 SRRN 257
            R+ 
Sbjct: 240 PRKG 243


>gi|92114283|ref|YP_574211.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91797373|gb|ABE59512.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 246

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 7/242 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    L+ L LVNPR  +P  +A   +A A  VID+ 
Sbjct: 2   LSNIRIVLVQTFHPGNIGQAARAMKTMGLSDLVLVNPR-SFPDAEATRLAAGATDVIDNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
           RV  ++ +A+ D   +   +AR R+        P+  A  L E       V ++FGRER+
Sbjct: 61  RVVEHIAQAVGDCVQVVGASARLRSLPLPHFDDPEPMASELIEHA-QDAPVALVFGRERF 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--AT 188
           GLTN+EI      +S P NP +  LN++QAV ++ +E               Q  P   T
Sbjct: 120 GLTNDEIRHCTHQVSIPANPEYGVLNLAQAVQILAYEVRRAWRHHQASPATSQTPPSLPT 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + ++  F  +L  +L   G+        +  D L ++F R +  R+E+ +LRG++STL+K
Sbjct: 180 RDQMAHFEAHLHEALVTSGFLTQPHA--RTEDHLRALFARAQPSRKELSILRGVLSTLEK 237

Query: 249 FS 250
             
Sbjct: 238 AG 239


>gi|67459564|ref|YP_247188.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
 gi|67005097|gb|AAY62023.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
          Length = 231

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 144/234 (61%), Gaps = 8/234 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            PVIILV PQ+GENIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID+ +V
Sbjct: 2   NPVIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNAKV 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +L++ I DL ++YATT   R   K  +  +   +       +   VGI+FGRE  GL+
Sbjct: 62  YDSLEDCIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSAKVGIMFGRENNGLS 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEEI+L+N II+      F SLNI+QAV+++ +E   NS  +  +++      ATK E+ 
Sbjct: 118 NEEISLANKIITINTT-EFSSLNIAQAVIIICYELFRNS--TPREDIYNIQKLATKEEIE 174

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTL 246
            FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L
Sbjct: 175 HFLANLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228


>gi|119476391|ref|ZP_01616742.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
           HTCC2143]
 gi|119450255|gb|EAW31490.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
           HTCC2143]
          Length = 226

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M N  L QL LV P+  +P E+A   +A+A  ++D+  V   L++A+AD   +  T+AR 
Sbjct: 1   MKNMGLKQLYLVQPK-LFPHERAGWRAASAGDILDNAVVVDTLEDAVADCGLVVGTSARG 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R     ++ P+  A  +   +     V ++FGRE  GLTNEE+ + N  ++ P +  + S
Sbjct: 60  RRIPWPLVNPRVCAERVYPELTE-HPVALVFGREDRGLTNEELQVCNLHVNIPASEDYTS 118

Query: 155 LNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRP 211
           LN+  AV ++ +E     +   +S++   +     A   ++     +LE +L E  + +P
Sbjct: 119 LNLGMAVQVVTYELRMAHLSGALSTDDMQEWDTKLAKSEDIERLFVHLEETLIEMQFLKP 178

Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
               K+++  L  +F R  +   EV ++RGI+S+  ++ R++ 
Sbjct: 179 -SAPKQLMTRLRRLFNRTRMDDLEVQMMRGILSSSQQWVRKAK 220


>gi|90410858|ref|ZP_01218872.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90328071|gb|EAS44382.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 218

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 4/221 (1%)

Query: 36  WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95
               LT L LV+P       K+ + +A A  V+ + ++   L EAIAD   +  ++AR+R
Sbjct: 1   KVMGLTNLVLVDPACEI-DAKSLALAAGAADVVTNAKIVKTLDEAIADCGLVIGSSARSR 59

Query: 96  NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
                 L P+E+ I   E   +   V I+FGRER GLTNEE+   +  +  P NP + SL
Sbjct: 60  TLEWPQLDPRESGIKTIEEAAA-HPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSSL 118

Query: 156 NISQAVLLMVWECMENSIVSSE-KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
           N++ AV  + +E     + S +    K+ +      EL  F ++LE    +  +      
Sbjct: 119 NLAMAVQTVSYEVRMAFLESQKYTGEKKVDEYPRAKELELFYEHLEKVTTQTQFINKKH- 177

Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
              ++  L  +F R    ++E+ +LRGI+S+++K      +
Sbjct: 178 PGMVMTKLRRMFTRARPEQQELNILRGILSSIEKSLEHRDK 218


>gi|319761837|ref|YP_004125774.1| RNA methyltransferase, trmh family, group 1 [Alicycliphilus
           denitrificans BC]
 gi|317116398|gb|ADU98886.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
           denitrificans BC]
          Length = 270

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 114/257 (44%), Gaps = 24/257 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+++ 
Sbjct: 14  RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLENA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA---------------AIVLNERIF 116
           R+ + L EA+  +  + AT    R+       P+                 A+  +  + 
Sbjct: 72  RIVATLDEALDGISHLCATAMTPRDFGPPTRTPRTHFDSLLKNQLPALDGRALEADSAMN 131

Query: 117 SG--QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G    V  +FG ER+G+ NE++   +  +S P NP F SLN+  AV ++ +E  +    
Sbjct: 132 HGPEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVIAYEWRQALGG 191

Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
                   Q   A   +L   L + E +L   G+  P    KK++  L  +F R +L +E
Sbjct: 192 FGVPESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQE 250

Query: 235 EVFLLRGIVSTLDKFSR 251
           E+ +LRG+  ++ + +R
Sbjct: 251 EIHILRGVAKSMLQAAR 267


>gi|313201578|ref|YP_004040236.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440894|gb|ADQ85000.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
           MP688]
          Length = 254

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 8/235 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L  P    NIG  ARAM    L  L+LVNP + +P  +A + +  A  ++++ +V S
Sbjct: 12  RVVLCQPSHPGNIGSTARAMKVMGLHDLKLVNP-EKFPDNEANALACGAVDILENAQVCS 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWG 131
            L+EA++        +AR R     +++ +EAA    E           + ++FG E  G
Sbjct: 71  TLEEALSGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSAHEDSKIALVFGTEMSG 130

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189
           L+N E+     +   P +P + SLN++ AV +M +E     +   +   +   + TPAT 
Sbjct: 131 LSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVRMALLDEQQPLPHAGLKATPATN 190

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            E+  F  +LE +L E G+  P    ++++  L  ++ R  L +EEV +LRGI++
Sbjct: 191 DEVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGILT 244


>gi|294670969|ref|ZP_06735825.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307456|gb|EFE48699.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 272

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 125/267 (46%), Gaps = 21/267 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-------------- 46
           M    P   +      I+L       NIG  ARAM    LT+L LV              
Sbjct: 1   MPNTKPTTPDYLSNISIVLTRTSHPGNIGSAARAMKTMGLTKLTLVAPNLMQTPMTAEPP 60

Query: 47  -----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                NP+     E++   ++ A  V+++ R+ + L+EA+AD     A T+R R     +
Sbjct: 61  VFDPANPQAFKLPEESFILASGAADVLENARICATLEEALADTVLSCALTSRRRELTAEL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P+     L     + Q   ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRALTPELLSAAEAEQQTALVFGNETYGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S E    E+NT AT  ++   + +++  +E+ G+F      ++++  
Sbjct: 181 QVVCYEIYSQTDSSMEHLKVEKNT-ATHAQIGGMVAHMQGLMEDIGFFN-RRNGERIIRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDK 248
           L ++F R     E++ +LRG  +T+ K
Sbjct: 239 LQNLFARAGTETEDIDILRGFFNTVKK 265


>gi|118602504|ref|YP_903719.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567443|gb|ABL02248.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 243

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 4/239 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              +++V+     NIG  ARAM N +L+ L LVNP+ G+PS  A + ++ AD V+ +  V
Sbjct: 7   NVRVVMVNTTEPGNIGAAARAMKNMSLSYLYLVNPK-GYPSAIATARASGADDVLSNAVV 65

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGL 132
             +LKEA+  ++ +   +AR RN     +    A   + + I    Q V +IFG ER GL
Sbjct: 66  CESLKEALQGVYLVIGASARQRNIKWRQMDVVGACSEIQKTIMAESQKVAVIFGTERTGL 125

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           TNEE+ L   +++ P N  + SLN++ A+ +  ++       ++ +  K  N  A   EL
Sbjct: 126 TNEELDLCQILMTIPGNSHYFSLNVASAIQVFAYQNY--VYNTTIEFKKSTNKLANFDEL 183

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            +F  +L   LE   YF     K  ++  L   F R    +EEV + RGI   +  F +
Sbjct: 184 ENFYAHLAQVLEYIEYFEDKRPKALLMRRLRRFFTRAMPEKEEVAIFRGIFRNIKPFKK 242


>gi|238021057|ref|ZP_04601483.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
 gi|237868037|gb|EEP69043.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
          Length = 266

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 21/266 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---------------- 49
           P L        I+L       NIG  ARAM    LT+L LV P                 
Sbjct: 2   PTLPAYLANIRIVLSRTSHPANIGAAARAMKTMGLTRLTLVAPNIMATPMTPEPPAFIAE 61

Query: 50  ---DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
              D    E++   S+ A  V++  ++ + L EA+A      A T+R R     +  P++
Sbjct: 62  QAADFRLPEESFVLSSGARDVLERAKIVATLPEALAGTTLSCALTSRRRELTTPLQTPRQ 121

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            A  L      GQ + ++FG E +GL+ +E+   N +++   NP + SLN++QAV ++ +
Sbjct: 122 LAPSLLAAAQVGQQIALVFGNETYGLSIDEVQQCNRLMTISGNPDYFSLNLAQAVQVVCY 181

Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
           E   +  +     + E+N  AT  ++   + +LE ++ +  +FR    +++M+  L+S+F
Sbjct: 182 ELFSHVNMDMSHLIPERN-LATAEQVAGMVQHLEDTMVQLDFFR-RRNQERMMRRLHSLF 239

Query: 227 IRPELMREEVFLLRGIVSTLDKFSRQ 252
            R +   E++ +LRG ++ + +   +
Sbjct: 240 NRADTTTEDIDILRGFLNRVQQKLPK 265


>gi|171057904|ref|YP_001790253.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170775349|gb|ACB33488.1| RNA methyltransferase, TrmH family, group 1 [Leptothrix cholodnii
           SP-6]
          Length = 252

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 6/237 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65
           +         IL+      N+G  ARAM       L LV PR  D    E+  + ++ A 
Sbjct: 1   MTPETDPTRFILLHTSHAGNVGATARAMKVMGFRDLVLVAPRFADVLSREETVAMASGAA 60

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++   R+ + L EA+  +H   AT    R+       P+E    L      G+ V  +F
Sbjct: 61  DILVRARIVATLDEALEGIHVACATAMTPRDFGPPTSTPREH---LPALAAGGERVAFVF 117

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           G ER+G++NEE+      +S P  P + SLN++QAV LM +E                  
Sbjct: 118 GSERYGMSNEEVYRCQICLSIPTQPDYGSLNLAQAVQLMAYEWRMALGGYDVSARTPAVQ 177

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
            A+  E+   L + + +L   G+  P    KK++  L  +  R  L REEV +LRGI
Sbjct: 178 RASLDEVQGALSHWQDTLVALGFLDPA-APKKLMPRLQQLLNRAALTREEVHILRGI 233


>gi|291614716|ref|YP_003524873.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584828|gb|ADE12486.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
           lithotrophicus ES-1]
          Length = 254

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 5/248 (2%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
            N  +   ++L       NIG  ARAM    L  L L+NPR  +P  +A + +A AD V+
Sbjct: 4   PNPLENVRVVLSHTTHPGNIGAAARAMKTMGLQHLYLINPR-YFPDAQATAMAAGADDVL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            S  V S++ EA+  + F  A TAR R+    V AP+EA   + +   S   V ++FG E
Sbjct: 63  QSAVVCSSIDEALQGVVFTVAMTARLRDISIEVKAPREAMPEVLQHAAS-NPVALLFGTE 121

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GLTNEE+  +   ++ P NP F SLNI+ AV +M +E   N    S      Q  PAT
Sbjct: 122 MSGLTNEEMGKAQLGVNIPANPDFSSLNIAAAVQVMAYEL--NVAAQSFTPAIPQIEPAT 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              +     +LE +L E G+F   +   +++  L  ++ R  L  EE+ +LRG+++   +
Sbjct: 180 HERVEGLYAHLEKTLFEIGFFT-TQNPARLMQRLRRLYSRTRLEDEEINILRGMLTVATE 238

Query: 249 FSRQSSRR 256
           ++ +  +R
Sbjct: 239 YNARLRKR 246


>gi|253999551|ref|YP_003051614.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986230|gb|ACT51087.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
           SIP3-4]
          Length = 258

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 118/235 (50%), Gaps = 8/235 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L  P    NIG  ARAM    L  L+LVNP + +P  +A + +  A  ++++ +V S
Sbjct: 16  RVVLCQPSHPGNIGSTARAMKVMGLHDLKLVNP-EKFPDNEANALACGAVDILENAQVCS 74

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWG 131
            L+EA+         +AR R     +++ +EAA    E           + ++FG E  G
Sbjct: 75  TLEEALTGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSADEDSKIALVFGTEMSG 134

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE--KNVKEQNTPATK 189
           L+N E+     +   P +P + SLN++ AV +M +E     +   +   +   + TPAT 
Sbjct: 135 LSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVRMALLDEQQALPHAGLKATPATN 194

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            E+  F  +LE +L E G+  P    ++++  L  ++ R  L +EEV +LRGI++
Sbjct: 195 DEVEMFYRHLEQTLTEIGFLNP-HSPRRLMQRLRRMYARTALEKEEVNILRGILT 248


>gi|296314460|ref|ZP_06864401.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
           polysaccharea ATCC 43768]
 gi|296838750|gb|EFH22688.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
           polysaccharea ATCC 43768]
          Length = 271

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 122/265 (46%), Gaps = 21/265 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------ 48
           M    P L        IIL       NIG  ARAM    L +L +V P            
Sbjct: 1   MASEKPALPAYLDNIRIILTRTGHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENPP 60

Query: 49  -------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                  +     E++   ++ A  V+ +  + + L EA+AD     A T+R R     +
Sbjct: 61  VFDPEHPQSFELPEESFILASGAADVLHNAEIVATLNEALADTAIACALTSRRREITAPL 120

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P++    L +    G+ V ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 121 QTPRDLVPELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTINGNPDYFSLNLAQAV 180

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +  S   ++++++  AT  ++   + ++E  + + G+F      ++++  
Sbjct: 181 QVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGMVAHMESVMNDIGFFN-RRNGERLMRR 238

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           + S+F R     E++ +LRG  +T+
Sbjct: 239 MQSLFGRANTQTEDIDILRGFFNTV 263


>gi|330826303|ref|YP_004389606.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
           K601]
 gi|329311675|gb|AEB86090.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
           denitrificans K601]
          Length = 270

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 24/257 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V++  
Sbjct: 14  RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLERA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------------- 118
           R+ + L EA+  +  + AT    R+       P++   +L +                  
Sbjct: 72  RIVATLDEALDGMSHLCATAMTPRDFGPPTRTPRQHFEMLLKNELQALGGRAIEADSAIN 131

Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                 V  +FG ER+G+ NE++   +  +S P NP F SLN+  AV ++ +E  +    
Sbjct: 132 PEPESGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVVAYEWRQALGG 191

Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
            + +    Q   A   +L   L + E +L   G+  P    KK++  L  +F R +L +E
Sbjct: 192 FAVQESAPQGERADAAQLAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLFNRAQLTQE 250

Query: 235 EVFLLRGIVSTLDKFSR 251
           E+ +LRG+  ++ + +R
Sbjct: 251 EIHILRGVAKSMLQAAR 267


>gi|332970351|gb|EGK09343.1| RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 265

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 21/265 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP------------------ 48
            + +      I+L       NIG  ARAM    L+QL LV P                  
Sbjct: 3   TVPDYLCHIRIVLSRTSHPANIGAAARAMKTMGLSQLVLVAPNIMATPMTPEPPEFIAEQ 62

Query: 49  -RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
                  E++   ++ A  V+++ ++ + L EA++      A T+R R     +  P+E 
Sbjct: 63  AEQFVLPEESFILASGAVDVLENAKIVATLPEALSGSVLNCALTSRRRELTSPLQTPREL 122

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              L     SGQ V ++FG E +GL+ +E+   N +++   NP + SLN++QAV ++ +E
Sbjct: 123 TPSLLAAAQSGQTVSLVFGNETFGLSIDEVQHCNRLMTISGNPNYFSLNLAQAVQVVCYE 182

Query: 168 CMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
                       + E+N  AT  ++   + +LE ++ +  +FR    +++M+  L+++F 
Sbjct: 183 LFSQVNQDMSHLIPERN-LATADQVAGMVQHLEQTMGQLDFFRS-RNQERMMRRLHALFN 240

Query: 228 RPELMREEVFLLRGIVSTLDKFSRQ 252
           R +   E+V +LRG    + +   +
Sbjct: 241 RADTTTEDVDILRGFYKKIQQSLSK 265


>gi|114330429|ref|YP_746651.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114307443|gb|ABI58686.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas eutropha
           C91]
          Length = 248

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 121/249 (48%), Gaps = 10/249 (4%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M P +P          I+L       NIG  ARAM    L +L L+NP+  +P  +A + 
Sbjct: 1   MNPASP-----LDNVRIVLSHTSHPGNIGATARAMKTMGLNKLYLINPK-SFPDSEADAR 54

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++NA  ++++  V SNL+EA+ D     A TAR R+        ++AAI L  R      
Sbjct: 55  ASNARDILETAHVCSNLEEALGDTFLAAALTARRRDLPHPTCNARQAAIELI-RHAQHHP 113

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++FGRE  GLT  EI+     +  P NP   SLN++ AV +M +E        +  + 
Sbjct: 114 VALLFGRESAGLTAAEISHCQVTVQIPANPDCSSLNLAAAVQVMAYELRMVLEEDAAAHY 173

Query: 181 KEQNTP--ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                P  A+  E+     +LE  +   G+  P +  K ++  +  +F R  L +EEV L
Sbjct: 174 FASRLPDAASLHEIEGLHYHLERVMIHSGFMDPDQ-PKHLMRRIRRLFARTRLEKEEVNL 232

Query: 239 LRGIVSTLD 247
           LRG+++ +D
Sbjct: 233 LRGLLTAVD 241


>gi|213421799|ref|ZP_03354865.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 200

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 5/201 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPAT 188
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     + + E       E+     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPL 179

Query: 189 KGELLSFLDYLEISLEERGYF 209
             +L  F  +LE +L   G+ 
Sbjct: 180 VDDLERFYGHLEQTLLSTGFI 200


>gi|317404811|gb|EFV85188.1| methyltransferase [Achromobacter xylosoxidans C54]
          Length = 263

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 14/260 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65
           +  +      I+V+P    N+G  ARA+     ++L LV P+  D     +A + ++ A 
Sbjct: 1   MTQAFSRVRFIMVNPSHPGNVGSAARAIKTMGFSELVLVGPKFADVTSQPEAVALASGAL 60

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGI 123
            V+++ R++  L+EA+A +   +A TAR R+        ++AA +    +         I
Sbjct: 61  DVLENARIYDTLEEALAPVTLAFALTARVRDLGPPPCDIRQAADLACAHLAETAEGCAAI 120

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------V 174
           + G ER GLTN +I L + I   P NP + SLN++QA+ L  WE     +          
Sbjct: 121 VLGTERAGLTNAQIGLCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPA 180

Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
           S+ +       PA+   + +FL + E +L    +  P    KK+L  +  +F R  L R+
Sbjct: 181 STAQAPSRGAEPASGEAVQAFLAHWEEALVGVRFLDPAH-PKKLLPRMRHLFSRVALTRD 239

Query: 235 EVFLLRGIVSTLDKFSRQSS 254
           EV ++RG+ + +   +R+  
Sbjct: 240 EVDMMRGVCTAMLAAARRDG 259


>gi|222110178|ref|YP_002552442.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
 gi|221729622|gb|ACM32442.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax ebreus
           TPSY]
          Length = 264

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 28/261 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+   
Sbjct: 4   RFILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------------AIVLNER 114
           R+ + L EA+  +  + AT    R+       P++                     L  +
Sbjct: 62  RIVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARK 121

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                 V  +FG ER+G+ NE++   +  +S P NP F SLN+  AV ++ +E  +    
Sbjct: 122 PSPESGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALAT 181

Query: 175 SSEKNVKEQNTP----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
             E    +++ P    A   ++   L + E +L   G+  P    KK++  L  +F R +
Sbjct: 182 RGEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQ 240

Query: 231 LMREEVFLLRGIVSTLDKFSR 251
           L +EE+ +LRG+  ++ + ++
Sbjct: 241 LTQEEIHILRGVAKSMLQATQ 261


>gi|255319194|ref|ZP_05360411.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Acinetobacter
           radioresistens SK82]
 gi|262379697|ref|ZP_06072853.1| rRNA methylase [Acinetobacter radioresistens SH164]
 gi|255303587|gb|EET82787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Acinetobacter
           radioresistens SK82]
 gi|262299154|gb|EEY87067.1| rRNA methylase [Acinetobacter radioresistens SH164]
          Length = 280

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 17/267 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I++V+  L  NIG   RAM    L +L LV PR  +P +   + +A A  +I+ +
Sbjct: 13  LSHVRIVMVNTTLPANIGSALRAMKTMGLCRLILVAPR-TYPHQDIDALAAGAQDLIEQI 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERW 130
           ++   L+EAI D H ++ T+AR+R     +L  + AA    + + S  Q + I+FGRE  
Sbjct: 72  QIVETLEEAIQDCHLVFGTSARSRTIPWPLLDARPAAQTSMQAVVSKQQEIAIVFGREDR 131

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN------ 184
           GLTNEE+AL+N  ++ PVN  +  LN++QA+ ++ +E    ++   +   +E N      
Sbjct: 132 GLTNEELALANYHVTIPVNTDYGVLNVAQAIQVICYEMRMATLELVDTPPQETNQMPVTG 191

Query: 185 --------TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
                      T  ++  F  +LE  LEE  +  P  K+   L          +L R E 
Sbjct: 192 KSMMDWDEPLVTHEQMEQFYPHLEKMLEEIEFLDPNNKRLLPLRLRRLFGR-IQLDRMEY 250

Query: 237 FLLRGIVSTLDKFSRQSSRRNNVLLQK 263
            LLRGI S +   +  + +++N   ++
Sbjct: 251 HLLRGIFSRVQALNNGTWKKSNSQKEQ 277


>gi|87200257|ref|YP_497514.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135938|gb|ABD26680.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 251

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/248 (39%), Positives = 146/248 (58%), Gaps = 4/248 (1%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + + +A+ PVI+LV PQLGENIG  ARAM NF L ++RLV+PRDGWP+  A  ++A AD 
Sbjct: 3   EAEGAARHPVIVLVRPQLGENIGKAARAMLNFGLAEMRLVSPRDGWPNPSAGPAAAGADI 62

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V++  +VF  L EA+AD   +YATT R R   K VL P++AA    + + +     IIFG
Sbjct: 63  VLERAQVFPTLAEAVADCSHVYATTVRKRGVTKPVLTPEQAA---RDIVSASGRSAIIFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            ER GL  +++AL+ AI++ P+NP F SLN++QAV+L  +E  ++ +   +  V++   P
Sbjct: 120 PERSGLETDDVALARAIVTVPINPEFGSLNLAQAVILCAYEWSKH-VDLVQPTVEDMLPP 178

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A + E     + L   LE RGYF P  +       L ++  +P     EV  +RG++S L
Sbjct: 179 APQEEFEGMFEQLCTMLEPRGYFEPESRAASTRRTLRTMLTKPGWNHLEVRTMRGVLSAL 238

Query: 247 DKFSRQSS 254
            +      
Sbjct: 239 RRKPGSRP 246


>gi|149184437|ref|ZP_01862755.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148831757|gb|EDL50190.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 243

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/241 (40%), Positives = 144/241 (59%), Gaps = 4/241 (1%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K PV++LV PQLGENIG  ARAM NF L +LR+V PRDGWP+  A  ++A AD V++  R
Sbjct: 7   KKPVVVLVRPQLGENIGKAARAMLNFGLVELRMVTPRDGWPNPDAGPAAAGADIVLEKAR 66

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF +  EA+AD   +YATT R R   K V  P+E      E   +     I+FG ER GL
Sbjct: 67  VFDSTAEALADCSHVYATTVRKRGVTKPVYTPEE---ASREMAQADGRSAILFGPERSGL 123

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
             E++AL+ AI++ P+NP F SLN++QAV+L  +E  ++  +      ++Q  PA + EL
Sbjct: 124 ETEDVALARAILTVPINPEFGSLNLAQAVILCAYEWSKHESLVQPTQ-EDQLPPAPQKEL 182

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
              + ++E  LE +GYF P  + +     L  +  +P     EV  LRG++S+L + +++
Sbjct: 183 EGLIAHMEGMLESKGYFLPESRAEATRRTLRGVLTKPGWNHLEVRTLRGVLSSLQRDAKR 242

Query: 253 S 253
           S
Sbjct: 243 S 243


>gi|114569563|ref|YP_756243.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114340025|gb|ABI65305.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 249

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 135/239 (56%), Gaps = 3/239 (1%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  ++  P  IL  PQLGENIG  AR M NF L +L +V+PRDGWP++KA + SA +  V
Sbjct: 1   MTQNSATPAFILHTPQLGENIGAAARVMGNFGLPELVVVDPRDGWPNDKAVTMSAGS-PV 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + + RV   L +AI D   +YATTAR R   K V+  +EA   +   I +G+ V ++FG 
Sbjct: 60  LGNARVEYRLGDAIHDTTRLYATTARPRGMEKPVMTAREAVSDMKAAIEAGEKVAVMFGG 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E+ GL NE + +++ II+ PV+  F SLN++QAV ++ +E    +   +    +  +  A
Sbjct: 120 EKSGLPNEAVNMADVIITLPVDRSFSSLNLAQAVAVIAYEW--TAGEGAPAEFEPVSDVA 177

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            + +L    ++ E  LE  G+F P  K   M+ +L + FIR     +EV   RG V  L
Sbjct: 178 KREDLERMFEHFETELERAGFFHPPSKTPLMVQNLRNAFIRGRWTEQEVRTFRGAVKAL 236


>gi|332283456|ref|YP_004415367.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330427409|gb|AEC18743.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 257

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 13/258 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65
           +    +    I+V P    N+G  ARA+       L LV PR  D      A+S ++ A 
Sbjct: 1   MSKFFEQVRFIMVRPSHPGNVGAAARAIKTMGFHDLCLVAPRFPDVLELPDAQSLASGAT 60

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123
            V+ SVR+   L+EA+A +   +A TAR R         ++AA V  + + S     V I
Sbjct: 61  DVLASVRIVPTLEEALAPITLAFALTARARMLGPPACDIRKAAQVSCQHLQSTRHARVAI 120

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--------SIVS 175
           + G ER GLTNE++AL   I   P NP + SLN+SQA+ L  WE             + S
Sbjct: 121 VLGTERSGLTNEDVALCQRICHIPANPEYSSLNVSQALQLAAWELRYTLASAASLPLLPS 180

Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
           +E    E +  A   ++ + + + E ++ E G+  P    KK++  +  +F R  L  +E
Sbjct: 181 TEGQANEGDQAAPGEKVQALMTHWEQAITEVGFLDPAH-PKKLMPRMRHMFGRNGLTHDE 239

Query: 236 VFLLRGIVSTLDKFSRQS 253
           V +LRG+ + + K +++ 
Sbjct: 240 VDMLRGLCTAMIKAAKKR 257


>gi|317154690|ref|YP_004122738.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
 gi|316944941|gb|ADU63992.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 248

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 2/235 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL  P+  ENIG  ARA  N  +++L +V P +    +    ++A+A  ++DS RV  
Sbjct: 6   AVILFRPKYPENIGSAARACLNMGVSRLIIVAPYNLDMDKARPLATAHARHILDSARVVE 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+     +Y TTAR     K +++P   A V++ER+ SG  V I+FG E  GLTN+
Sbjct: 66  TLAEAVEGFTSVYGTTARTGGWRKGIMSPTTLAGVVDERLRSGGRVAILFGPEDTGLTND 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELLS 194
           E ++ + +++ P +    SLN++QAV+++++EC + ++ +           A T  E  +
Sbjct: 126 ETSVCSGLMTIPTSREGTSLNLAQAVVVVLYECFKRALDAPFTPNGPPTERATTVQEQEA 185

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             + L  SL    +    +     +  +   F +  L R E  LL G+   +  F
Sbjct: 186 LFENLRESLLAIDFL-KGDNPDYWMLPVRRFFAKINLRRNEFNLLMGVCRQIQWF 239


>gi|157803305|ref|YP_001491854.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
 gi|157784568|gb|ABV73069.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 146/234 (62%), Gaps = 8/234 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P+IILV PQ+GENIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID+ ++
Sbjct: 2   NPIIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNTKI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + NL+++I DL ++YATT   R   K  +  +     L+    +   VGI+FGRE  GL+
Sbjct: 62  YDNLEDSIKDLEYLYATTCIKRAMNKDYVFSQN----LSLDYPNSAKVGIMFGRENNGLS 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEEI+L+N II+      F SLNI+QAV+++ +E   N  +   +++      ATK E+ 
Sbjct: 118 NEEISLANKIITINTT-EFSSLNIAQAVIIICYELFRNFTL--REDIHNIQKLATKEEIE 174

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP-ELMREEVFLLRGIVSTL 246
            FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV +L+GI+ +L
Sbjct: 175 HFLTNLFGKLDKLGFFKAPDKKPAMQQNITNIFTRINNLSSHEVQILQGIIKSL 228


>gi|302877882|ref|YP_003846446.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
           capsiferriformans ES-2]
 gi|302580671|gb|ADL54682.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
           capsiferriformans ES-2]
          Length = 253

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 132/248 (53%), Gaps = 5/248 (2%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           QN      ++L       NIG  ARAM    L++L L+NPR  +P  +A + +A AD V+
Sbjct: 4   QNHLSNIRVVLSHTTHPGNIGAAARAMKAMGLSRLYLINPR-HFPDPQASAMAAGADDVL 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  V +++ EA+  +      TAR R+    V  P+EA   + ++  + Q V ++FG E
Sbjct: 63  QNAVVCASIDEALDGVVLTVGMTARQRDISNEVSVPREAMPQVVQQAQTLQ-VALLFGTE 121

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GLTNEE + +  +++ P NP F SLN++ AV ++ +E    +   + + V++   PA 
Sbjct: 122 MSGLTNEEASRAQMLVNIPANPEFSSLNLAAAVQVISYELSVAA--QNYQPVEQSLQPAA 179

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++  F+ +LE +L E G+F   +   +M+  L  ++ R     +E+ +LRGI+S   +
Sbjct: 180 HQQVEGFMSHLEKTLHEIGFFT-TQNPARMMQRLRRLYARARPEADEINILRGILSVTTE 238

Query: 249 FSRQSSRR 256
           ++ +   R
Sbjct: 239 YNGRLKAR 246


>gi|217976583|ref|YP_002360730.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
 gi|217501959|gb|ACK49368.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
          Length = 281

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 107/244 (43%), Positives = 155/244 (63%), Gaps = 6/244 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-----SEKARSSSANADCVI 68
           GP IILV PQL  NIGM ARAM NF L+ LRLV+PR+GWP      + A +++A A  ++
Sbjct: 16  GPAIILVRPQLAVNIGMCARAMANFGLSDLRLVSPREGWPRTGALKKGAHAAAAGAVHLL 75

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +++   +EA+ADL+F++ATTAR R   K VL P EA       I  G   G++FG E
Sbjct: 76  EGAKLYDTPEEAVADLNFVFATTARERGQHKPVLTPAEALPGAALAIAGGAKGGVMFGPE 135

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPA 187
           R GL+N+E+AL++ +I+FPVNP + SLN++QAVLL+ +E M  S  +    V   ++ PA
Sbjct: 136 RTGLSNDEVALADRLITFPVNPAYASLNLAQAVLLIGYEWMRASTEAKAPFVADPRSPPA 195

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            +  +LSF  YLE  LE  G+FRP++K   M  ++ +IF R +L  ++V  LRG +  L 
Sbjct: 196 PREMVLSFFAYLEGELERVGFFRPLDKAPVMRRNIKNIFHRLDLSAQDVSTLRGAIVRLV 255

Query: 248 KFSR 251
           +  R
Sbjct: 256 EGPR 259


>gi|262376214|ref|ZP_06069444.1| rRNA methylase [Acinetobacter lwoffii SH145]
 gi|262308815|gb|EEY89948.1| rRNA methylase [Acinetobacter lwoffii SH145]
          Length = 282

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 130/275 (47%), Gaps = 17/275 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +        I++V+  L  NIG   RAM    L++L LV P+  +P     + +A A  
Sbjct: 8   AVSAHLSHVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVAPK-TYPHPDIDALAAGATD 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIF 125
           +I+ + +   L++AI D   ++ T+AR+R     +L  + AA   +   +   Q V I+F
Sbjct: 67  LIEQIEIVETLEDAIKDCQIVFGTSARSRTIPWPLLDVRPAAEKAMTAVVQDQQEVAILF 126

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN------ 179
           GRE  GLTNEE+A++N  ++ PVN  +  LN++QA+ ++ +E    ++   E+       
Sbjct: 127 GREDRGLTNEELAMANYHLTIPVNTDYGVLNVAQAIQVICYEMRMATMSQIEQPRDAKAT 186

Query: 180 --------VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPEL 231
                   ++         ++  F  +LE  L E  +  P    + +   L  +F R +L
Sbjct: 187 MQVIDGIEMEWDEPLVNHAQMEQFYPHLEKMLAEIEFMDPK-NPRLLPLRLRRLFGRIQL 245

Query: 232 MREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266
            R E  LLRGI S +   +  + ++++    + E 
Sbjct: 246 DRMEYHLLRGIFSRVQALNNGTWKKSSHTSSQDED 280


>gi|114320401|ref|YP_742084.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226795|gb|ABI56594.1| RNA methyltransferase, TrmH family, group 1 [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 260

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 6/256 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + +   I+LV      NIG VARAM    L +L LV P   +P E+A ++++ AD V+++
Sbjct: 10  NPENLRIVLVGTSHPGNIGSVARAMKTMGLFRLELVAPECAFPDEQATANASRADDVLEA 69

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNN-FKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                NL  A+A    +   +AR R      VL  +EA   +     S + V ++FGRER
Sbjct: 70  AGRHDNLDAALAGCGLVMGLSARPRRITTAEVLDVREAGRRVVAEAES-RPVALLFGRER 128

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLTN E+    A++  P NP + SLN++ AV ++  E            V      A+ 
Sbjct: 129 SGLTNAELDRCQALVHIPANPEYGSLNLAAAVQVVCHEVNMARGAGV---VAPTRRSASA 185

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++  F ++L    +  G+ R     + ++  L  +F R      E+ +LRG+++ ++  
Sbjct: 186 QDMEYFFEHLARVADRVGFLRK-HNPEILMRRLRQLFYRAAPDDHELQMLRGLLANVEPH 244

Query: 250 SRQSSRRNNVLLQKTE 265
             +          K E
Sbjct: 245 LPELPDAAQRAGTKDE 260


>gi|56479103|ref|YP_160692.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56315146|emb|CAI09791.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 242

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 4/238 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     I+L       NIG  ARAM    L++L LV P   +P   A + ++ A  V++S
Sbjct: 6   ALDRIRIVLSRTSHPGNIGAAARAMKTMGLSRLYLVAP-SAFPDPVADARASGATDVLES 64

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V  +L EA+       A TAR R     V + +EAA  L      G +V ++FG E  
Sbjct: 65  ACVVDSLDEALHGTILSAAITARRRERSVPVRSAREAAPELVAFAEKG-DVALVFGTEMS 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLTN+E+   +  +S P NP F SLN+  AV L+ +E    ++ S     +     AT  
Sbjct: 124 GLTNDEVERCSMPVSIPANPAFSSLNLGAAVQLLCYELRMAAL-SPTPPAEPLPDLATFE 182

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           E+  F  +LE ++   G++ P    K++L  L  +F R  L +EEV +LRGIV  L++
Sbjct: 183 EIEGFHRHLERAMTASGFYDPA-NPKRLLQRLRRLFGRVRLEKEEVNILRGIVGALER 239


>gi|288940600|ref|YP_003442840.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288895972|gb|ADC61808.1| RNA methyltransferase, TrmH family, group 1 [Allochromatium vinosum
           DSM 180]
          Length = 260

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 6/251 (2%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q+  S      +LV+     NIG VARAM    L++L LV PR   P  +A + ++ AD 
Sbjct: 4   QMTESLARIRFVLVETTHSGNIGAVARAMKTMGLSRLDLVAPRQ-RPDAEALARASGADD 62

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++    V  NL +A+A    +   +AR R+    +L P E A  L      G+ V ++ G
Sbjct: 63  LLARAGVHENLTDALAGCRLVVGASARLRSIEWPLLEPPECAERLLAEAGEGE-VALMLG 121

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-T 185
           RE  GLTN+E+A  + ++  P NP F SLN++ A  ++ +E    +   + + + E    
Sbjct: 122 RESSGLTNDELARCHFLVHIPTNPDFSSLNVAAAAQVLAYEIRRAARAVAGERLTETPRD 181

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            AT   +  F  +L  +L   G+  P + +         +F R +  R E+ +LRGI+S 
Sbjct: 182 LATAEAMEGFYAHLTETLVRIGFSDPEQSRTLTRRL-RRLFNRAQPDRVELNILRGILSA 240

Query: 246 LDKFSRQSSRR 256
                R++  R
Sbjct: 241 AQ--GRKTPER 249


>gi|148244602|ref|YP_001219296.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326429|dbj|BAF61572.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 247

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 124/239 (51%), Gaps = 6/239 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +++V+     NIG  ARAM N NL++L LVNP+ G+PS  A + ++ AD V+    V 
Sbjct: 12  VRVVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPK-GYPSATATARASGADDVLSDAIVC 70

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLT 133
            +L+EA+   H +   +AR RN     +        + + I    Q V +IFG E+ GLT
Sbjct: 71  ESLEEALKGTHLVIGASARQRNIKWRQMDVVGTCNKIQKTITIDSQEVAVIFGTEKSGLT 130

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ-NTPATKGEL 192
           N+E+ L   +++ P NP + SLN++ A+ +  +   +N I ++    KE  +  A+  EL
Sbjct: 131 NKELDLCQILMTIPGNPDYFSLNVASAIQVFAY---QNYIYNTPTEFKENVSKLASFDEL 187

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            SF  +L   LE   YF+    +  ++  L   F + E   EEV + RGI+  +  F R
Sbjct: 188 ESFYTHLTQVLEHIEYFKDQHSQTLLMRRLRCFFTKVEPKIEEVSIFRGILKNIKPFKR 246


>gi|225024719|ref|ZP_03713911.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC
           23834]
 gi|224942514|gb|EEG23723.1| hypothetical protein EIKCOROL_01605 [Eikenella corrodens ATCC
           23834]
          Length = 268

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 129/265 (48%), Gaps = 21/265 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP----------------- 48
           P + +  +   ++L       NIG  ARAM    L +L LV P                 
Sbjct: 5   PTVPDYLRHIHVVLTRTSHPGNIGAAARAMKTMGLNRLTLVAPNLMATPMTPEPPTFDAA 64

Query: 49  --RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
                   E++   ++ A  V++  ++ ++L EA+AD     A T+R R     +  P+E
Sbjct: 65  QAAAFQLPEESFILASGARDVLEQAQIVASLDEALADTVLSCALTSRRRELSAPLHTPRE 124

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               L +    G  V ++FG E +GL  +E+   N +++   NP + SLN++QAV ++ +
Sbjct: 125 LVPELLQAAQQGFQVALVFGNETFGLNIDEVQRCNRLLTISGNPAYFSLNLAQAVQVVCY 184

Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
           E    + +   + +++ +TPAT+ +    +D+LE  +E+ G+      +++M+  L+S+F
Sbjct: 185 EIFSQTGIGMSQ-LQQAHTPATQSQTRGMVDHLEQIIEQTGF-ANRRNQERMMRRLHSLF 242

Query: 227 IRPELMREEVFLLRGIVSTLDKFSR 251
            R    RE++ LLRG+ + + +  +
Sbjct: 243 DRASPSREDIDLLRGLWNRISQRLK 267


>gi|163857771|ref|YP_001632069.1| methyltransferase [Bordetella petrii DSM 12804]
 gi|163261499|emb|CAP43801.1| probable methyltransferase [Bordetella petrii]
          Length = 255

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 14/247 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
            I+V P    N+G  ARA+       L LV PR  D     +A + ++ A  V++  RV 
Sbjct: 10  FIMVQPSHPGNVGSAARAIKTMGFADLVLVEPRYPDMTSQPEAVALASGATDVLERARVC 69

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGIIFGRERWGL 132
           + L+EA+A +   +A TAR R+        ++AA + ++ + +  +    ++ G ER GL
Sbjct: 70  ATLEEALAPVTLAFALTARVRDLGPPPCDIRQAAELASQHLAAPGSGCAAVVLGTERAGL 129

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQ 183
           TN +IAL   I   P NP + SLN++QA+ L  WE     +          S+ +     
Sbjct: 130 TNAQIALCQRICHIPANPEYSSLNVAQALQLAAWELRYALLRANGATLLPASTAQQPDPG 189

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              AT   + +FL + + +L    +  P    KK++  +  +F R  L R+E+ +LRG+ 
Sbjct: 190 AALATSEAVQAFLAHWQEALVHVQFLDPAH-PKKLMPRMRHLFSRSALTRDEIDMLRGVC 248

Query: 244 STLDKFS 250
           + + +  
Sbjct: 249 TAMLRKK 255


>gi|220906581|ref|YP_002481892.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219863192|gb|ACL43531.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7425]
          Length = 262

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 7/256 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +      I+LV+P    NIG ++R + N  L QL LVNP       +AR  + +A  ++ 
Sbjct: 10  SPLAQVRIVLVEPAGPLNIGAISRVLKNMGLRQLILVNPLCDPLGTEARQMAVHAVDLLQ 69

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R    L +A+     I ATT R +        P+     L      G    +IFGRE 
Sbjct: 70  QARQVQTLPQALEGCERIMATTMREQVGEVVTELPRTGLPWLL-----GHPAALIFGRED 124

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS-SEKNVKEQNTPAT 188
            GLTN E+  +  +I  P +P++PSLN++QAV +  +E  + +  +  E         A 
Sbjct: 125 RGLTNTELNYAQRLIRIPTDPIYPSLNLAQAVAVCSYELYQQASQALVEPIAPGGGELAR 184

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              L ++   LE  L + GY        + +     +F R +    EV LLRGI+S ++ 
Sbjct: 185 FENLEAYYQQLETVLLKIGYLYSHTAVSR-MAKFRRLFNRSQPTEAEVALLRGILSQVEW 243

Query: 249 FSRQSSRRNNVLLQKT 264
                   ++    + 
Sbjct: 244 ALTAKPALDSSPDSRE 259


>gi|121593461|ref|YP_985357.1| RNA methyltransferase [Acidovorax sp. JS42]
 gi|120605541|gb|ABM41281.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax sp. JS42]
          Length = 264

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 28/261 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+   
Sbjct: 4   RFILIQTSHAGNVGATARAMKTMGFDDLVLVAPR--WPNVLRKEETIQRASGALDVLAHA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-----------------AIVLNER 114
           R+ + L EA+  +  + AT    R+       P++                     L   
Sbjct: 62  RIVATLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARN 121

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                 V  +FG ER+G+ NE++   +  +S P NP F SLN+  AV ++ +E  +    
Sbjct: 122 PSPETGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALAT 181

Query: 175 SSEKNVKEQNTP----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
             E    +++ P    A   ++   L + E +L   G+  P    KK++  L  +F R +
Sbjct: 182 RGEGFAVQESAPQGERADAAQVAGMLAHWEQALTGIGFLDPA-APKKLMPRLNQLFNRAQ 240

Query: 231 LMREEVFLLRGIVSTLDKFSR 251
           L +EE+ +LRG+  ++ + ++
Sbjct: 241 LTQEEIHILRGVAKSMLQAAQ 261


>gi|40063429|gb|AAR38240.1| RNA methyltransferase, TrmH family, group 1 [uncultured marine
           bacterium 580]
          Length = 248

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 119/236 (50%), Gaps = 4/236 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L       NIG  ARA+     T L LVNP+  +P  +A + +A A+ ++ +  + S 
Sbjct: 13  IVLCRTSHPGNIGSSARAIKTMGFTHLTLVNPKQ-FPHAEANALAAGAEDILANATIVST 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +++A+ D H I   TAR R   +     +E A  L     S + + ++FG E  GL+N+E
Sbjct: 72  IEDALKDSHLIIGFTARQRELSQEHKNIREIASKLKSESHS-KKIALLFGNETNGLSNDE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN-SIVSSEKNVKEQNTPATKGELLSF 195
           +   + +     N  + SLN++QA+ ++ +E     S  ++     ++N   T      F
Sbjct: 131 VKHCHMLGYINSNTKYSSLNLAQAIQIICYEIRMQLSEDNAIIQSSKKNELVTHEVQNGF 190

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             +LE  L E G+ + ++   +++  L  +F R  + ++EV +LRGI++ + K  +
Sbjct: 191 YLHLEQLLTEIGFLKKIQ-GDRLMQRLRLLFNRTTMEKDEVNILRGILTDIQKKIK 245


>gi|311107734|ref|YP_003980587.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762423|gb|ADP17872.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Achromobacter xylosoxidans A8]
          Length = 263

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/260 (26%), Positives = 126/260 (48%), Gaps = 14/260 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65
           +  +      I+V+P    N+G  ARA+     ++L LV P+  D     +A + ++ A 
Sbjct: 1   MTQAFSRVRFIMVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTSQPEAVALASGAL 60

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VGI 123
            V+++ R+  +L+EA+A +   +A TAR R+        ++AA +    +         +
Sbjct: 61  DVLENARIHDSLEEALAPVTMAFALTARVRDLGPPPCDIRQAAELARAHLGETAEGVAAV 120

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------V 174
           + G ER GLTN +IAL + I   P NP + SLN++QA+ L  WE     +          
Sbjct: 121 VLGTERAGLTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVDQGAALLPA 180

Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
           S+ +       PA+   + +FL + E +L    +  P    KK++  +  +F R  L R+
Sbjct: 181 STAQEAPRGAAPASSEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRHALSRD 239

Query: 235 EVFLLRGIVSTLDKFSRQSS 254
           EV ++RG+ + +   +R++ 
Sbjct: 240 EVDMMRGVCTAMLATARRNG 259


>gi|20089567|ref|NP_615642.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A]
 gi|19914482|gb|AAM04122.1| SpoU rRNA methylase [Methanosarcina acetivorans C2A]
          Length = 255

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 16/256 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P    N+G VARAM NF  + L LVNP +     +AR+ +++A  V++  R+ 
Sbjct: 8   IRVVLVEPMYQGNVGSVARAMKNFGYSDLVLVNPCE--LEGQARAMASHARDVLEGARIT 65

Query: 75  SNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGL 132
           S L+EA+     +  TT A +    + +  P   A    E+I      + ++FGRE  G 
Sbjct: 66  STLEEAVRGADLLVGTTGASSLKTGEHIRLPLYPAREFKEKIKEYSGTIAVLFGREDNGF 125

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            N+E+   + +I+ P + ++P +N+S AV ++++E  E    +        N  A   +L
Sbjct: 126 NNDELKSFDMLITVPTSEIYPIMNLSHAVSIVLYELSELEGGN--------NPLAEGFDL 177

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
                +L+  LEE  Y  P  KK K    L  I  R  L   EV  LRGI+   ++    
Sbjct: 178 QLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRKTERKMGF 235

Query: 253 SSRRNNVLLQKTEKSE 268
           ++   N  LQK E SE
Sbjct: 236 ATEAEN--LQKVEDSE 249


>gi|325265919|ref|ZP_08132605.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982557|gb|EGC18183.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 271

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 128/266 (48%), Gaps = 21/266 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPRDGWP-- 53
            +        I+L       NIG  ARAM    L++L LV           NP    P  
Sbjct: 4   TVPPYLANIRIVLSRTSHPANIGAAARAMKTMGLSRLYLVAPNLMQTPMTPNPPAFDPKQ 63

Query: 54  ------SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
                  E++ + ++ A  V+++  +  +L EA+       A T+R R     +  P+E 
Sbjct: 64  PAHFCLPEESFTLASGAADVLENAVIVGSLPEALTGTVLSCALTSRRRELTSPLQTPREL 123

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              L     + Q+V ++FG E +GL+ +E+   N +++   NP + SLN++QAV ++ +E
Sbjct: 124 TPSLLAAAQARQSVALVFGNETFGLSIDEVQHCNRLMTISGNPDYFSLNLAQAVQVVCYE 183

Query: 168 CMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFI 227
               +       + E+N  AT  ++   + ++E ++E+  +FR    +++M+  L+S+F 
Sbjct: 184 LFSQTHQDMSYLIPERN-LATADQVAGMVRHMEQAMEQLDFFRK-RNQERMVRRLHSLFS 241

Query: 228 RPELMREEVFLLRGIVSTLDKFSRQS 253
           R +   E++ +LRG  + + + ++++
Sbjct: 242 RADTTTEDIDILRGFFNMVQQKTQKT 267


>gi|285018692|ref|YP_003376403.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473910|emb|CBA16411.1| putative trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 252

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 6/245 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    L +L LV P        A   SA A+ V+    V 
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGLARLVLVAPECSV-DVDAYRRSAGAEDVLQQAPVL 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+AD   +   TAR+R      L P +AA  L   +     V ++FGRER GLTN
Sbjct: 66  PTLADALADCRLVLGCTARSRRVALQELLPADAAQRLAATVADAAEVAVVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS----SEKNVKEQNTPATKG 190
           EE+   +A +  P +P F SLN++ AV ++ +E     + S           +  PA+  
Sbjct: 126 EELQQCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLTQLRSEAAVPAAAPGLREAPASHA 185

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L      L  +L++  +       +  +  L  +F+R  L  +EV LLRG++S   + +
Sbjct: 186 QLEGLFGQLAETLDDIDF-HKGRAPESAMRKLRRLFLRNALSEQEVRLLRGVLSDAQRMA 244

Query: 251 RQSSR 255
           R + +
Sbjct: 245 RLAGQ 249


>gi|257097728|pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From
           Haemophilus Influenzae Rd Kw20
 gi|257097729|pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From
           Haemophilus Influenzae Rd Kw20
          Length = 244

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 128/241 (53%), Gaps = 14/241 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARA     LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 5   LENIRIVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 62

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 63  RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 120 LTNEELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAFLVQNNKKNSLSLIEKNYP- 178

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  +L  F DY E   +  G+     + + +   L  ++ R +L + E+ +L G +S ++
Sbjct: 179 TTDQLAYFFDYTERIYQSLGFI----QNQGVXRKLKRLYYRAKLEKNELNILNGXLSAVE 234

Query: 248 K 248
           K
Sbjct: 235 K 235


>gi|257093601|ref|YP_003167242.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046125|gb|ACV35313.1| RNA methyltransferase, TrmH family, group 1 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 265

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 7/258 (2%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            +P      +   I+L       NIG  ARAM    +++L LVNP+  +P ++A + +A 
Sbjct: 6   RSPSSGVPLERIRIVLSHTSHPGNIGAAARAMKTMGVSRLVLVNPK-RFPDDEAVARAAG 64

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           AD ++   +V + L  A+AD  ++ A +AR+RN     L  ++AA+ L  R  +G+ V +
Sbjct: 65  ADDILGQAQVCTTLDAALADTVWVCAVSARHRNLGPPALPARQAAVDLVARAGAGE-VAL 123

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----N 179
           +FG E  GL+N E+      +  P +P + SLN++ AV L+ +E    +   S       
Sbjct: 124 LFGNETAGLSNAEVQRCRQTVFIPADPGYTSLNLAAAVQLLCYELRLAAFAGSPPVVTRT 183

Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
           +   + PA   ++  F  +LE  +    +  P E+ +++L  L  +F R EL  +E+ +L
Sbjct: 184 MPFASPPAVHQDVERFYAHLERVMVASDFLDP-ERPRRLLPKLRRLFGRTELESDEINIL 242

Query: 240 RGIVSTLDKFSRQSSRRN 257
           RG++  +++      R  
Sbjct: 243 RGLLDAVERKLAGPGRSG 260


>gi|299533288|ref|ZP_07046672.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
 gi|298718818|gb|EFI59791.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
          Length = 266

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 26/256 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             +L++     N+G  ARA+       L LV PR  +    E+    ++ A  V+D  RV
Sbjct: 4   RFVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARV 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-------------------- 113
              L+EA+  +  + AT    R+       P+E   +L +                    
Sbjct: 64  VDTLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSVSEVDAGLTDNLP 123

Query: 114 ---RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + + V  +FG ER+G++N+++   +  +S P NP F SLN+  A+ ++ ++   
Sbjct: 124 TSGAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRV 183

Query: 171 NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
                       +   A   ++   L + E +L   G+  P    KK++  L  +F R +
Sbjct: 184 ALGGFPVVEHTPEAHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQ 242

Query: 231 LMREEVFLLRGIVSTL 246
           L +EE+ +LRG+   +
Sbjct: 243 LTQEEIHILRGVAKAM 258


>gi|254292954|ref|YP_003058977.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254041485|gb|ACT58280.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 253

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/250 (37%), Positives = 141/250 (56%), Gaps = 5/250 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S + P IILV PQ+GENIG  AR M NF L  LR++NPRDGWP++KA + SA A      
Sbjct: 6   SNRQPAIILVSPQMGENIGATARVMANFGLKDLRIINPRDGWPNDKADTMSAGAFEWGVE 65

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +VF  L+  +ADL ++ ATTAR R   K V   +E    L  R   G  VG++FG E+ 
Sbjct: 66  AKVFDTLEAGLADLTYVLATTARPRGMEKPVFNAEEGIGALMSRPDVG--VGVMFGAEKA 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV-SSEKNVKEQNTPATK 189
           GL NE++AL++ I+++PV+  F SLN++QAV +        ++   ++K        A +
Sbjct: 124 GLLNEDVALADGILTYPVDRSFSSLNLAQAVGVFAHSWAARTLEGEAKKEFAGVGDSADR 183

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD-- 247
            +L+   ++ E  L+  G+F P EK+  M  +L + FIR +   +EV   RG V  L   
Sbjct: 184 EQLVRMFEHFEDELDRAGFFFPAEKRPVMTQNLRNAFIRAQWTNQEVQTFRGAVKALALG 243

Query: 248 KFSRQSSRRN 257
           +   +  R++
Sbjct: 244 RGKARIDRKD 253


>gi|157828032|ref|YP_001494274.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932730|ref|YP_001649519.1| SpoU family rRNA methylase [Rickettsia rickettsii str. Iowa]
 gi|157800513|gb|ABV75766.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907817|gb|ABY72113.1| rRNA methylase, SpoU family [Rickettsia rickettsii str. Iowa]
          Length = 230

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/236 (41%), Positives = 146/236 (61%), Gaps = 8/236 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++
Sbjct: 2   NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+
Sbjct: 62  FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEEIA +N II+      F SLNI+QAV+++ +E + NS  +  ++V      ATK E+ 
Sbjct: 118 NEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248
            FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L++
Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSSEVQTLQGIIKSLNQ 230


>gi|329119228|ref|ZP_08247915.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464575|gb|EGF10873.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 269

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 24/270 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR----------- 49
           MTP AP   +      ++L       NIG  ARAM    LT+L LV P+           
Sbjct: 1   MTPAAPAYLD---NIAVVLTRTSHPANIGSAARAMKTMGLTRLILVAPKLMATPMTPAPP 57

Query: 50  --------DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                        E++   ++ A  V+D+      L  A+AD     A T R R     +
Sbjct: 58  PFDPQKPQAFRLPEESYILASGAADVLDAAITVPTLDAALADTVVSCALTGRKRELTAPL 117

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P+E A  +     +G    ++FG E +GL+ EE+   N +++   NP + SLN++QAV
Sbjct: 118 QTPRELAPEILHTARAGCRAALVFGNETFGLSIEEVQSCNRLMTIAGNPAYFSLNLAQAV 177

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E    +       V +++ PAT  ++     ++   ++E G+F       +++  
Sbjct: 178 QVVAYELYSQTEADLSHLVPQKH-PATHDQVAGMTAHMAELMDEIGFFN-RRNSPRIIRR 235

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L+++F R +   E++ L+RG  +T+ K  +
Sbjct: 236 LHNLFARAKPETEDIDLMRGFFNTVGKRLK 265


>gi|85861011|ref|YP_463213.1| rRNA methylase [Syntrophus aciditrophicus SB]
 gi|85724102|gb|ABC79045.1| rRNA methylase, spoU family [Syntrophus aciditrophicus SB]
          Length = 263

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 7/252 (2%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L+ + +   ++L  P+   NIG  AR   N  + +L +V+ R+ +  E+ R  S 
Sbjct: 9   PRIMNLKATLEHIAVVLNHPKYAGNIGSAARCAKNMGIERLIVVSDRE-YRQEEIRQMST 67

Query: 63  N-ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A  V+DS+  F +L EA++  ++I  TTAR       V++P+E A  + E I     V
Sbjct: 68  HLAADVVDSIVYFRDLGEALSGFNYIVGTTARLGLARGPVVSPREMAEQVIE-ISRDNEV 126

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            ++FG E  GLTN+++   + ++S P +  F SLN+S AV+++ +E    S+  +   V+
Sbjct: 127 ALLFGPEDTGLTNDDLRYCHTVVSIPTSERFRSLNLSHAVMILCYEI---SVAETGIPVR 183

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
                A+  EL     ++   L++ G+  P E  +  +  +  +F R  L  +EV ++RG
Sbjct: 184 FTPKMASSRELEGMYGHIGALLQKIGFLNP-ENPEYWMMHIRRLFSRIRLQAKEVRIIRG 242

Query: 242 IVSTLDKFSRQS 253
           I   L  +    
Sbjct: 243 ICRQLCWYLHHK 254


>gi|264679621|ref|YP_003279528.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
 gi|262210134|gb|ACY34232.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
          Length = 267

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 26/256 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             +L++     N+G  ARA+       L LV PR  +    E+    ++ A  V+D  RV
Sbjct: 5   RFVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDKARV 64

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-------------------- 113
              L+EA+  +  + AT    R+       P+E   +L +                    
Sbjct: 65  VDTLEEALDGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDVRSVSEVDAGLTDNLP 124

Query: 114 ---RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + + V  +FG ER+G++N+++   +  +S P NP F SLN+  A+ ++ ++   
Sbjct: 125 TSGAACNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRV 184

Query: 171 NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
                       +   A   ++   L + E +L   G+  P    KK++  L  +F R +
Sbjct: 185 ALGGFPVVEHTPEAHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQ 243

Query: 231 LMREEVFLLRGIVSTL 246
           L +EE+ +LRG+   +
Sbjct: 244 LTQEEIHILRGVAKAM 259


>gi|158522634|ref|YP_001530504.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511460|gb|ABW68427.1| RNA methyltransferase, TrmH family, group 1 [Desulfococcus
           oleovorans Hxd3]
          Length = 260

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 10/255 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVR 72
           G  IILV P++ ENIG   RAM N  L++L++V P + W   +   ++ +A   V++ + 
Sbjct: 13  GITIILVRPRIPENIGACCRAMKNMGLSRLKVVAP-EAWDPVRIMKTATHACRDVVEKIE 71

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +   A++   +I  TTAR     + VL+P   A            V ++FG E  GL
Sbjct: 72  IVGDTATAVSPFSYIAGTTARMGRQRQMVLSPGGFAEKAVTLCRE-NPVAVMFGPEDRGL 130

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            NE++   + ++  P +  F SLN++QAVL++ +E    +  + +     Q   A+  EL
Sbjct: 131 ENEDLQYCHNLVHIPTS-EFSSLNLAQAVLVICYELFGAARPNQDHF---QPRLASSFEL 186

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
               D ++  L    + RP +     +++      R  L  +EV L+RG+   ++ +  +
Sbjct: 187 EGMYDQMKEVLLAIDFLRP-DNPDYWMNNFRRFVSRVGLTAKEVKLIRGVCRQVNWYGEK 245

Query: 253 SSRRNNVLLQKTEKS 267
             R  + L +K +K 
Sbjct: 246 --RYADGLAEKKKKD 258


>gi|21227939|ref|NP_633861.1| RNA methylase [Methanosarcina mazei Go1]
 gi|20906361|gb|AAM31533.1| RNA methylase [Methanosarcina mazei Go1]
          Length = 259

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 16/261 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+N +    ++LV+P    N+G VARAM NF  + L L+NP +     +AR+ S++A  V
Sbjct: 5   LRNLSLNIRVVLVEPMYQGNVGSVARAMKNFGYSDLVLMNPCE--LEGQARAMSSHARDV 62

Query: 68  IDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIF 125
           ++  R+ S L+EA+     +  TT   +    + +  P      + E++      + ++F
Sbjct: 63  LEGARIVSTLEEAVKGADLLIGTTGVSSLKTGEHIRLPLYTVKEVREKLKGCSGTIALLF 122

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           GRE  G +N+E+   + +++ P + ++P +N+S AV ++++E                N 
Sbjct: 123 GREDNGFSNDELKGFDMLVTVPTSEIYPIMNLSHAVAIVLYEL--------SGLEGGSNP 174

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A   +L     +L+  LEE  Y  P  KK K    L  I  R  L   EV  LRGI+  
Sbjct: 175 LADGFDLQLLYGHLDELLEEIDY--PAHKKDKTSLMLRRILGRAGLTPREVQTLRGIIRK 232

Query: 246 LDKFSRQSSRRNNVLLQKTEK 266
            ++  R +S      LQK E 
Sbjct: 233 SERKMRLASGVET--LQKIED 251


>gi|293606592|ref|ZP_06688948.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
           piechaudii ATCC 43553]
 gi|292814977|gb|EFF74102.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
           piechaudii ATCC 43553]
          Length = 252

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 127/249 (51%), Gaps = 14/249 (5%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSN 76
           +V+P    N+G  ARA+     ++L LV P+  D     +A + ++ A  V+++ R++ +
Sbjct: 1   MVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTTQPEAIALASGALDVLENARIYPS 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTN 134
           L+EA+A +   +A TAR R+        ++AA +  E +   +     ++ G ER GLTN
Sbjct: 61  LEEALAPVTMAFALTARVRDLGPPPCDIRQAADLAREHLAGTAEGVAAVVLGTERAGLTN 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI---------VSSEKNVKEQNT 185
            +IAL + I   P NP + SLN++QA+ L  WE     +          S+ +       
Sbjct: 121 AQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVEQGAALLPASTAQEPSRGAE 180

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
           PA+   + +FL + E +L    +  P    KK++  +  +F RP L R+EV ++RG+ + 
Sbjct: 181 PASGEAVQAFLAHWEEALIGVQFLDPAH-PKKLMPRMRHLFSRPALTRDEVDMMRGVCTA 239

Query: 246 LDKFSRQSS 254
           +   +R++ 
Sbjct: 240 MLATARRNG 248


>gi|221065807|ref|ZP_03541912.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
 gi|220710830|gb|EED66198.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
          Length = 266

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 26/256 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             +L++     N+G  ARA+       L LV PR  +    E+    ++ A  V+D  RV
Sbjct: 4   RFVLIETSHAGNVGAAARALKTMGFDDLVLVRPRYKNVLRKEETIQRASGALDVLDRARV 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-------------------- 113
              L EA+  +  + AT    R+       P+E   +L +                    
Sbjct: 64  VDTLDEALEGISHMCATAMTPRDFGPPTRTPREHFELLLKGELDTRSIPAEDAGLTDNQP 123

Query: 114 ---RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
               + + + V  +FG ER+G++N+++   +  +S P NP F SLN+  A+ ++ ++   
Sbjct: 124 TPGAVCNQKGVAFLFGCERFGMSNDDVYRCDVALSIPSNPQFGSLNLGSAIQVVAYDWRA 183

Query: 171 NSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
                       +   A   ++   L + E +L   G+  P    KK++  L  +F R +
Sbjct: 184 ALGGFPVVEHTPEVHRADMAQVQGMLGHWEQALAHIGFLDPA-APKKLMPRLNQLFNRAQ 242

Query: 231 LMREEVFLLRGIVSTL 246
           L +EE+ +LRG+   +
Sbjct: 243 LTQEEIHILRGVAKAM 258


>gi|325916981|ref|ZP_08179223.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536832|gb|EGD08586.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 293

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/264 (29%), Positives = 121/264 (45%), Gaps = 9/264 (3%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P +P +  S +    +LV  Q   NIG  ARAM    +++L LV P      E A   
Sbjct: 33  IAPQSPFMSVSQR-IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRR 90

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SA A+ V+ +  +F  L EA+AD   +   TAR R      L P E A     +      
Sbjct: 91  SAGAEDVLGNAPLFDTLSEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAE 150

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V  +FGRER GLTN+E+ L +A +  P +P F SLN++ AV ++ +E     + +     
Sbjct: 151 VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGGAEP 210

Query: 181 KEQNT------PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
                      PA+  +L      L  +L+E  +       +  +  L  + +R E+  +
Sbjct: 211 VPAAASGLRDGPASHAQLEGMFGQLGETLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQ 269

Query: 235 EVFLLRGIVSTLDKFSRQSSRRNN 258
           EV L+RGI+S   + +  + R  N
Sbjct: 270 EVRLIRGILSDAQRMAMLAKRAGN 293


>gi|229586358|ref|YP_002844859.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
 gi|228021408|gb|ACP53116.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
          Length = 230

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 144/234 (61%), Gaps = 8/234 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++
Sbjct: 2   NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+
Sbjct: 62  FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEEIA +N II+      F SLNI+QAV+++ +E + NS  +  ++V      ATK E+ 
Sbjct: 118 NEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTL 246
            FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L
Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228


>gi|157825295|ref|YP_001493015.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
 gi|157799253|gb|ABV74507.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
          Length = 231

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 144/234 (61%), Gaps = 8/234 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            PVIILV PQ+GENIG  ARAM NF L++LR+V PRDGWP+E+ARS++  A  +ID+ ++
Sbjct: 2   NPVIILVVPQMGENIGATARAMKNFGLSELRIVAPRDGWPNEQARSNAVGAVNIIDNAKI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + NL+E++ DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+
Sbjct: 62  YDNLEESVQDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N+E+AL+N II+      F SLNI+QAV+++ +E   N      +++      ATK E+ 
Sbjct: 118 NKEVALANKIITINTT-EFSSLNIAQAVIIICYELFRN--FKPREDIHNIQKLATKEEIE 174

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTL 246
            FL  L   L++  +F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L
Sbjct: 175 HFLTNLFGKLDKARFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSL 228


>gi|157964184|ref|YP_001499008.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
 gi|157843960|gb|ABV84461.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
          Length = 233

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/236 (40%), Positives = 145/236 (61%), Gaps = 8/236 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P+IIL+ PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++
Sbjct: 5   NPIIILIAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 64

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+
Sbjct: 65  FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 120

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEEIA +N II+      F SLNI+QAV+++ +E   NS  +  ++V      ATK E+ 
Sbjct: 121 NEEIAFANKIITINTT-KFSSLNIAQAVIIICYELFRNS--TPREDVHNIQKLATKEEIE 177

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248
            FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L++
Sbjct: 178 HFLVNLFGKLDKAGFFKAPDKKPAMQQNITNIFTRINSLSSPEVQTLQGIIKSLNQ 233


>gi|320450586|ref|YP_004202682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
           scotoductus SA-01]
 gi|320150755|gb|ADW22133.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
           scotoductus SA-01]
          Length = 252

 Score =  258 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 124/252 (49%), Gaps = 10/252 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVI 68
            +   I+LV+PQ   N+G VARAM NF L++L LVNP  R G P + +A   + +A+ V+
Sbjct: 2   LERVRIVLVEPQEPMNVGAVARAMRNFGLSRLYLVNPSPRVGPPWAREAYWLAVHAEEVL 61

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           D      +L EA+  + F+ ATT R R  +   V+  +E    +   +     V ++FGR
Sbjct: 62  DRAVAVESLGEALEGVSFVVATTGRPRELYPAPVVTAREVPAHV---LSVKGEVALVFGR 118

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E +GLTNEE+ L++ I + P  P  PSLN++QAV++  +E  +  +       +E+   A
Sbjct: 119 ETFGLTNEELDLAHLIGTIPTAPEQPSLNLAQAVVVFAYELYQAWLQQGSTVSQEE--LA 176

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
               L  F   L   + E G+          +  L  IF +  L   EV LLRG++    
Sbjct: 177 DVAALEGFFADLGRYVLEIGFTDEHRHP-YAMRRLRRIFHKARLSPGEVQLLRGLLHQSR 235

Query: 248 KFSRQSSRRNNV 259
                + ++   
Sbjct: 236 YAVASALKKEGT 247


>gi|119713414|gb|ABL97476.1| RNA methyltransferase [uncultured marine bacterium HF130_81H07]
          Length = 243

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 122/236 (51%), Gaps = 4/236 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            ILV+P    NIG  ARA+ N    +L +V PR    +++A   + +A  ++D+  ++ +
Sbjct: 11  FILVEPSHSGNIGACARAIKNMGFKKLGIVKPRKTI-TKEAYYRAKSAKDILDNALIYES 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
             +AI D + I AT+AR R          + +  +   + S +N   +IFGRE  GL+NE
Sbjct: 70  FDQAIEDKNLILATSARERTIPWPTFFIDDVSEEIKSELQSAKNKTAVIFGREDNGLSNE 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+   +  +  P +  +PSLN+S A+ L+ +E  + ++ SS     E++  AT  E    
Sbjct: 130 ELQKCHIHLVIPTSVEYPSLNLSHALQLVAFEIRKITLDSSILKSDERDI-ATNEENEKL 188

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L++L   L++  ++ P    K++   +  +  +  L + E+ +LRG +S +  F +
Sbjct: 189 LEHLMEVLKKIDFYDP-RSSKQVKTRIERLLKKTRLDKMEMGILRGFLSKIMDFEK 243


>gi|73669106|ref|YP_305121.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
 gi|72396268|gb|AAZ70541.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 14/243 (5%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++N +    I+LV+P    N+G VARAM NF  T L LVNP       +AR+ S++A  V
Sbjct: 1   MRNLSLKIRIVLVEPMYQGNVGSVARAMKNFGYTDLVLVNPCK--LEGEARAMSSHARDV 58

Query: 68  IDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIF 125
           ++  R+ S L+EA+   +    TT   +    + +  P   +  L ER+      + I+F
Sbjct: 59  LEGARIVSTLEEAVKGANLRIGTTGVASLKTGEHIRLPLYTSRELKERLKDYSGTIAILF 118

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           GRE  G  N+E+   + + + P + ++P +N+S AV ++++E  +    +S         
Sbjct: 119 GREDTGFRNDELKSFDMLFTIPTSEIYPIMNLSHAVAVVLYELSDMEGGNSP-------- 170

Query: 186 PATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            A   +L    +++E  LEE  Y  P  KK K    L  I  R  L   EV  LRGI+  
Sbjct: 171 LADGFDLQLLYEHMEKLLEEIDY--PPHKKDKTYLMLRRILGRAGLTPREVQTLRGIIKK 228

Query: 246 LDK 248
            ++
Sbjct: 229 TER 231


>gi|85708541|ref|ZP_01039607.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85690075|gb|EAQ30078.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 249

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/248 (41%), Positives = 145/248 (58%), Gaps = 11/248 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A  PVI+LV PQLGENIG  ARAM NF LT++R+VNPRDGWP+  A  ++A AD V+D  
Sbjct: 2   ANKPVIVLVRPQLGENIGKAARAMLNFGLTEMRIVNPRDGWPNPSAGPAAAGADIVLDEA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +VFS+  EA+AD   +YATT R R   K V+ P  AA +++          I+FGRE  G
Sbjct: 62  KVFSSTAEAVADCEHVYATTVRKRGVTKPVVGPDGAARLIHAEP---GRHAILFGREASG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--------NSIVSSEKNVKEQ 183
           L  E++AL+  I++ P+NP F SLN++QAV+L  +E           +S +       E 
Sbjct: 119 LETEDVALARHILTVPINPEFGSLNLAQAVILCAYEWSRIGREAEDASSDLVQPTAEDEA 178

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
             PA + +L   + + E  L+ RGYF P  +++     L S+  +P     EV  LRGI+
Sbjct: 179 LPPAPQDDLEGLIGHFEKLLDPRGYFLPESRREATARTLRSVLTKPGWNHLEVRTLRGIL 238

Query: 244 STLDKFSR 251
           STL++  R
Sbjct: 239 STLERPPR 246


>gi|91205992|ref|YP_538347.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157826644|ref|YP_001495708.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
 gi|91069536|gb|ABE05258.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157801948|gb|ABV78671.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
          Length = 231

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 149/234 (63%), Gaps = 8/234 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+IILV PQ+GENIG  ARAM NF L +LR++ PRDGWP+E+ARS++  A  +ID+ +++
Sbjct: 3   PIIILVAPQMGENIGATARAMKNFGLDELRIITPRDGWPNEQARSNAVGAVNIIDNAKIY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++L+E I DL ++YATT   R   K  +  +     L     S   VGI+FGRE  GL+N
Sbjct: 63  NSLEECIKDLEYLYATTCIKRAINKDYVFSQN----LTSDYPSLAKVGIMFGRENNGLSN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEI+L+N II+      F SLNI+QAV+++ +E   NS   S +++      ATK E+  
Sbjct: 119 EEISLANKIITINTT-EFSSLNIAQAVIIVCYELFRNS--ESREDIYNIQKLATKEEIDH 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP-ELMREEVFLLRGIVSTLD 247
           FL +L   L++ G+F+  E+K  M  ++ +IF+R   L   E+ +L+GI+ +L+
Sbjct: 176 FLTHLFGKLDKAGFFKIPERKLIMQQNITNIFMRINNLSTPEIQILQGIIKSLN 229


>gi|58582333|ref|YP_201349.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426927|gb|AAW75964.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 304

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 8/250 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 57  IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSEAPIF 115

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 116 ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTN 175

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+
Sbjct: 176 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPAS 235

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 236 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 294

Query: 249 FSRQSSRRNN 258
            +  + +  N
Sbjct: 295 MAMLARQAEN 304


>gi|30249901|ref|NP_841971.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
 gi|30180938|emb|CAD85864.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrosomonas europaea ATCC 19718]
          Length = 246

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 128/249 (51%), Gaps = 10/249 (4%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M P +P          I+L       NIG  ARAM    L++L LVNP+  +P  +A + 
Sbjct: 1   MNPASP-----LDNVRIVLSHTSHPGNIGATARAMKTMGLSRLYLVNPK-SFPDSEADAR 54

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++NA  +++S  V ++L+EA+ D     A TAR+R+        ++AA  L  R      
Sbjct: 55  ASNARDILESACVCTSLEEAMGDTFLAAALTARSRDLSHPTRNARQAAGELI-RYAHHHP 113

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME--NSIVSSEK 178
           V ++FGRE  GLT+ EI+     +  P N  + SLN++ AV +M +E        V +++
Sbjct: 114 VALLFGRESAGLTSAEISHCQLTVQIPANSAYSSLNLAAAVQIMAYELRMVLEEGVVADE 173

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
              +   PA+  E+     +LE  + + G+  P  + K+++  +  +F R  L +EEV +
Sbjct: 174 PDPQLPEPASLQEIEGLHHHLEQVMVQSGFLDP-TQPKRLMRRMRRLFARTRLEKEEVNI 232

Query: 239 LRGIVSTLD 247
           LRG+++ ++
Sbjct: 233 LRGLLTAVN 241


>gi|119713263|gb|ABL97329.1| RNA methyltransferase [uncultured marine bacterium HF10_12C08]
          Length = 245

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/237 (35%), Positives = 140/237 (59%), Gaps = 1/237 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILVD QL EN+G+VAR+M+NF  T L+LV+P+  WPSEKA + + +A  ++++++V+
Sbjct: 6   ISIILVDTQLPENVGLVARSMYNFGFTNLKLVSPKLEWPSEKALAVAVDAKNIVENIKVY 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+L+EA++D  +    TAR R+  K      +    + E+  +  ++G++FG E  GLTN
Sbjct: 66  SSLREALSDSSYSIGYTARLRDMSKQFSDNSKIISEIKEQKIND-SIGVVFGGEASGLTN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           + ++L    ++   +  F SLN+S AV +  +        + +   K      ++ +L+ 
Sbjct: 125 DHLSLITKCVTIDTHENFSSLNLSHAVNVFCYSLFSQVFKTEQLVDKNSEPHGSQNDLMY 184

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           F D+LE  LE RG+F+P EK  KM  +L +IF R +L   E+  LRG+V  L ++ +
Sbjct: 185 FFDHLEEELESRGFFQPEEKMPKMKQNLRNIFHRADLSEREIATLRGVVRVLSEYRK 241


>gi|301061729|ref|ZP_07202470.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
           NaphS2]
 gi|300444189|gb|EFK08213.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
           NaphS2]
          Length = 253

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 5/241 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV PQ+ ENIG VARAM N  L++L +V+P++       ++++  +  V++ +
Sbjct: 7   LENVAVVLVQPQIPENIGSVARAMHNMGLSRLIVVDPKNCDADRMNKTATGTSTKVLEDM 66

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  NL+EA+    ++  TTARN     ++  P+  A  L   I  G +V I+FG E  G
Sbjct: 67  DISRNLREALVPFQYLVGTTARNGTLRPALTQPRTLAQKLIP-ISQGNSVAILFGPEDRG 125

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+N+++   + I++ P    F SLN++QAV+++ +E    +    E         A   E
Sbjct: 126 LSNDQLRFCHTILTVPTA-SFSSLNLAQAVVIVCYELFLAT--DGEHREPPVPRLANSFE 182

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L    D+L   L + G+  P +  +  L ++     R  L   EV ++RGI   +D +  
Sbjct: 183 LEGMYDHLREMLSKIGFLDP-QNPEHWLLNIRRFLARVPLRAREVRIIRGICRQMDWYVS 241

Query: 252 Q 252
           Q
Sbjct: 242 Q 242


>gi|88808981|ref|ZP_01124490.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
 gi|88786923|gb|EAR18081.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
          Length = 244

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 3/240 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++LV+P    N+G VAR   NF +  LRLV PR     E+A   + +   V+   + 
Sbjct: 2   GLAVVLVEPAGPLNVGSVARLCANFGIDDLRLVAPRCRISDEEAVRMAVHGQTVLRKAKT 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L EAI D   + A+  R  +    +    +A   + E + SG  V ++FGRE  GL+
Sbjct: 62  FETLLEAIGDCQRVVASCGRIDHGHIPLQTSDQAMPWVEEGLRSGAQVALVFGREDRGLS 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATKGE 191
           NEE+ LS  ++    +  +PSLN+S AV +++ +     ++    +   Q  P  A + +
Sbjct: 122 NEELLLSQRVVRLQTDDQYPSLNLSHAVAVVLHDLQRCKLLIRSDHPCPQLEPEAAAQPQ 181

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L   +   +  L E G+  P   K + +  + S+  R  +  +E+ +LRG+V  L    R
Sbjct: 182 LDDCMQDAQELLLEAGFLLPHTAKAR-MAKIRSLLQRARIRPQELAMLRGMVRQLRWAIR 240


>gi|149926793|ref|ZP_01915052.1| probable methyltransferase [Limnobacter sp. MED105]
 gi|149824345|gb|EDM83563.1| probable methyltransferase [Limnobacter sp. MED105]
          Length = 269

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 12/249 (4%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68
           S +   I+LV      N+G VARAM    L  LRLV P+  D   +E+A S ++ A  V+
Sbjct: 6   SLESISIVLVKTSHPGNVGSVARAMKTMGLNDLRLVEPKTKDICSTEEAISLASGASDVL 65

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  R+++ L EA+AD    +A +AR R+   S+ +P+EAA        SG     +FG E
Sbjct: 66  EQARIYNTLPEALADRSVAFALSARMRDLGPSLQSPQEAAREALNLTQSGIGAAFVFGAE 125

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS---------EKN 179
           R GL+N+E+ + N  ++   NP++ SLN+SQAV ++ +                     +
Sbjct: 126 RTGLSNDELLVCNRQVTIAANPVYSSLNLSQAVQIVAYALRTEWAAGEFAVTDQGSLADS 185

Query: 180 VKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
           V++    AT   +     +   ++E   +  P +K KK++  L  +  +  L +EEV +L
Sbjct: 186 VRQGGKLATVKAVADLQAHWLEAMEAVDFLNP-DKPKKVVQRLARMLAKTPLEQEEVDML 244

Query: 240 RGIVSTLDK 248
           RG  S + +
Sbjct: 245 RGFFSDVIR 253


>gi|91774342|ref|YP_567034.1| RNA methyltransferase TrmH, group 1 [Methanococcoides burtonii DSM
           6242]
 gi|91713357|gb|ABE53284.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242]
          Length = 231

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 20/240 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    NIG VARAM NF  + L LVNP +     +AR+ +++A  +++S +    
Sbjct: 7   IILVEPLYQGNIGSVARAMKNFGFSDLILVNPCELKM--EARAFASHAYDILESAKTVET 64

Query: 77  LKEAIADLHFIYATTAR-----NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++EA+     + ATT       + +       P++  +  +        + +IFGRE  G
Sbjct: 65  IEEALEGSDLVIATTGITGMKIDEHIRMPPYTPRDLKVKFSGMS---GTIAVIFGREDHG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            TNEE+ LS+ I+S P + ++P +N+S AV ++++E          + +  +N+ A   +
Sbjct: 122 FTNEELKLSDVIVSIPTSKIYPIMNLSHAVTIILYEM--------SQILAGENSLADGFD 173

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L    ++++  L++  Y  P  KK+K       IF R +LM  EV  LRG +  + K  +
Sbjct: 174 LRLLFEHIDEVLDDIDY--PAHKKEKTHLMFKRIFGRAQLMPREVQTLRGFIGKVQKHIK 231


>gi|114799978|ref|YP_759896.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114740152|gb|ABI78277.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 248

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 131/236 (55%), Gaps = 5/236 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           + P IIL  PQLGENIG  AR M NF LT LRLV PRDGWPS  A + SA A      V 
Sbjct: 3   RAPAIILHAPQLGENIGAAARVMLNFGLTDLRLVKPRDGWPSAPAEAMSAGALAQGTQVS 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF  L+EA+  L +  ATTAR R   K+V    +A   L  +        ++FG E+ GL
Sbjct: 63  VFETLEEAMTGLTYTIATTARPRGMEKAVFGAPDAVGALKRQAGQ---SAVLFGGEKSGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS--EKNVKEQNTPATKG 190
            NE +AL +AI+++PVNP F SLN++QAV +   +   ++ +    +   +    PA + 
Sbjct: 120 PNEAVALCDAILTYPVNPDFSSLNLAQAVGVFCHQWGASAGLEGKFDGTTEGLGAPALRE 179

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           EL+   ++ E  LE  GYF P EK   M+ +L +  +R +  ++EV   RG +  L
Sbjct: 180 ELIGMFEHFEAELERAGYFYPPEKTPVMVTNLRNALVRAQWTQQEVRTFRGAIKAL 235


>gi|238650706|ref|YP_002916559.1| rRNA methylase [Rickettsia peacockii str. Rustic]
 gi|238624804|gb|ACR47510.1| rRNA methylase [Rickettsia peacockii str. Rustic]
          Length = 230

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/236 (41%), Positives = 146/236 (61%), Gaps = 8/236 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++
Sbjct: 2   NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+
Sbjct: 62  FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEEIA +N II+      F SLNI+QAV+++ +E + NS  +  ++V      ATK E+ 
Sbjct: 118 NEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRNS--TPREDVHNIQKLATKEEIE 174

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248
            FL  L   L++ G+F+  +KK  M  ++ +IF R   L   EV  L+GI+ +L++
Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQNITNIFTRINSLSSPEVPTLQGIIKSLNQ 230


>gi|121604287|ref|YP_981616.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
           CJ2]
 gi|120593256|gb|ABM36695.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
           CJ2]
          Length = 311

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 111/256 (43%), Gaps = 18/256 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             IL++     N+G  ARAM       L LV PR  +    E+    ++ A  V+++ R+
Sbjct: 40  RFILINTSHAGNVGATARAMKTMGFDDLVLVAPRWANVLRREETIQRASGALDVLNNARI 99

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---------------IFSG 118
              L EA+  +  + AT    R+      AP+     L  R                   
Sbjct: 100 VETLDEALDGMAHLCATAMTPRDFGPPTRAPRAHFAELLGRSEALLKQELGTPVHPAQRP 159

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +V  +FG ER+G+ NE++   +  +S P +P F SLN+  AV L+ ++  E       +
Sbjct: 160 DSVAFLFGSERFGMQNEDVYRCHVALSIPTDPKFGSLNLGAAVQLIAYDWREALGGFGIQ 219

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
              E+   A    +   L + E +L + G+  P    KK++  L  +F R +L  EE+ +
Sbjct: 220 AAIEEPRLADAAAVSGMLKHWEEALVDIGFLDPAS-PKKLMPRLNQLFNRAQLSPEEIHI 278

Query: 239 LRGIVSTLDKFSRQSS 254
           LRG+   + + +   +
Sbjct: 279 LRGVAKAMMRHAPDKA 294


>gi|326387396|ref|ZP_08209005.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208052|gb|EGD58860.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 233

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 94/235 (40%), Positives = 134/235 (57%), Gaps = 4/235 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV PQLGENIG  ARAM NF LT+LR+V PRDGWP+  A  ++A AD V++   VF  
Sbjct: 2   IVLVRPQLGENIGKAARAMLNFGLTRLRIVAPRDGWPNPSAGPAAAGADIVLEQAEVFDT 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD   +YATT R R   K V+ P+ AA  +           I+FG ER GL  ++
Sbjct: 62  LADAVADCAHVYATTVRKRGVTKPVVTPEAAAREIIAAPGQ---CAIVFGPERSGLETDD 118

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL+  II+ P+NP F SLN++QAV+L  +E  +++ +  +   +E   PA + E     
Sbjct: 119 VALARTIITVPINPEFASLNLAQAVILCAYEWSKHADL-VQPTAEELLPPAPQEEFEGMF 177

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             L   LE  GYF P  +       L ++F +      EV  +RGI++TL +  R
Sbjct: 178 AQLTTMLEPLGYFEPEIRAPVTRRTLRTMFTKAAWNHLEVRTMRGILTTLARKPR 232


>gi|166711820|ref|ZP_02243027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 254

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 8/250 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSEAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASQPAEVAFVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------PAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + E              PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGESEPAPAAATGLRDGPAS 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244

Query: 249 FSRQSSRRNN 258
            +  + +  N
Sbjct: 245 MAMLAKQAEN 254


>gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 248

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 4/239 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDS 70
            +   +IL  P+  ENIG VARA  N    Q+ LV P   W   KA   +  +A  ++++
Sbjct: 2   LENIDVILFRPKYPENIGSVARACLNMGCGQIVLVEPW-NWDQGKALPLATHHAGHLLEN 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +R+   L EA+A   F Y TTAR     + +  P+EAA  + E+  +G  V I+FG E  
Sbjct: 61  IRIHGTLAEALAPYSFAYGTTARTGGWRQGIQTPEEAAPRIIEQSNAGAKVAIVFGPEDK 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATK 189
           GLTNEE  L N +++ P      SLN+SQAV+++++EC + S+    K   + ++   + 
Sbjct: 121 GLTNEETDLCNQLLTIPTTDNLTSLNLSQAVMVVLYECFKKSLAKPFKVAGQPKDRYISS 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            E     + L  +L E  +    +  +  +  L   F R      E  LL G+   + +
Sbjct: 181 EEREVLFNQLRETLIEIDFLNK-DNPEYFMLPLKRFFNRINPRLNEYNLLMGLCRQMRR 238


>gi|120610753|ref|YP_970431.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120589217|gb|ABM32657.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 277

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 112/274 (40%), Gaps = 37/274 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             IL+      N+G  ARAM       L LV PR  +    E+    ++ A  V+++ R+
Sbjct: 4   RFILIQTSHAGNVGAAARAMKTMGFGDLVLVAPRWSNVLRREETIQRASGALDVLENARI 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI---------- 123
            + L EA+  +  + AT    R+      +P+E    L  R  +     +          
Sbjct: 64  VATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLARRQSADAAHPLAELALEGGIA 123

Query: 124 ------------------------IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
                                   +FG ER+G+ NE++   +  +S P NP F SLN+  
Sbjct: 124 PVPPADADPVSAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGA 183

Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219
           A+ ++ +E          ++    + PA   ++   L + E +L + G+  P    KK++
Sbjct: 184 AIQVIAYEWRLALGGFPVRDAAPASVPADAAQVAGMLAHWERALVDVGFLDPA-APKKLM 242

Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
             L  +F R +   EE+ +LRG+   + + +R  
Sbjct: 243 PRLNQLFNRAQPTPEEIHILRGVAKAMSEAARAK 276


>gi|78048137|ref|YP_364312.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036567|emb|CAJ24258.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 254

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 8/250 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT------PAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + +              PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGQAERAPAAAPGLRDGPAS 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244

Query: 249 FSRQSSRRNN 258
            +  + +  N
Sbjct: 245 MAMLAKQAGN 254


>gi|89901662|ref|YP_524133.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
 gi|89346399|gb|ABD70602.1| RNA methyltransferase TrmH, group 1 [Rhodoferax ferrireducens T118]
          Length = 286

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 35/265 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             IL++     N+G  ARAM     T L LV PR  +    E+    ++ A  V+ + R+
Sbjct: 4   RFILINTSHAGNVGAAARAMKTMGFTDLVLVAPRWANVLRREETIQRASGALDVLKNARI 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL---------------------- 111
              L EA+  +  + AT    R+       P+E   +L                      
Sbjct: 64  VDTLDEALEGITHLCATAMTPRDFGPPTATPREHFELLLNKERLTHIPRGLEADLAYKNE 123

Query: 112 ----------NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
                            + +G +FG ER+G+ NE++   +  +S P +P F SLN+  AV
Sbjct: 124 ILPETSELVQAAVAAPERGMGFLFGCERFGMRNEDVYRCHVALSIPSDPQFGSLNLGAAV 183

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            ++ +E          ++   +   A   ++   L +LE SL+  G+  P +  KK++  
Sbjct: 184 QVIAYEWRLALGAFPVQSATLEPVLADAAQVAGMLGHLEQSLQAIGFLDP-QAPKKLMPR 242

Query: 222 LYSIFIRPELMREEVFLLRGIVSTL 246
           L  +F R  + +EEV +LRGI   +
Sbjct: 243 LNQLFNRAGVTQEEVHILRGIAKAM 267


>gi|218682399|ref|ZP_03530000.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium etli CIAT
           894]
          Length = 225

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 99/216 (45%), Positives = 146/216 (67%), Gaps = 2/216 (0%)

Query: 52  WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
           WP+EKA ++++ AD VI + +V+  L++A+ADL+F+YATTAR R+ +K V +P  AA  L
Sbjct: 1   WPNEKALATASKADHVIAATKVYDTLEQAVADLNFVYATTARERDGYKPVRSPVIAAETL 60

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +  +G+  GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E M++
Sbjct: 61  RAKFRAGEGTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKS 120

Query: 172 SIVS--SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
            +    +        TP+TK +L    D LE +L+ RGYF P  KK KM+D+L ++  R 
Sbjct: 121 GMEDVGAVPFQAMGQTPSTKEQLFGLFDQLEEALDARGYFHPAGKKPKMVDNLRAVLSRR 180

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTE 265
               +E+ +LRG++S+LD+FSR+S R         E
Sbjct: 181 AFTEQEISVLRGVISSLDRFSRKSPRGGRFPTPAKE 216


>gi|21243118|ref|NP_642700.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108636|gb|AAM37236.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 254

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 116/250 (46%), Gaps = 8/250 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     +   E           ++ PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAVGEAEPAPAAASGLRDGPAS 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244

Query: 249 FSRQSSRRNN 258
            +  + +  N
Sbjct: 245 MAMLARQAGN 254


>gi|294664933|ref|ZP_06730248.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605303|gb|EFF48639.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 254

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 8/250 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPAS 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244

Query: 249 FSRQSSRRNN 258
            +  + +  N
Sbjct: 245 MAMLARQAGN 254


>gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 256

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 2/245 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++LV  +  ENIGM ARA  N   + L LV+P +    +    ++A+A  +++SV
Sbjct: 2   LDNLRVVLVRTKYPENIGMAARACANMGCSDLVLVDPLNLDLDKALPLATAHARHILESV 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV   L  A+AD H ++ TTAR     KS++ P EA  +    +  G+ V ++FG E  G
Sbjct: 62  RVTHGLAAALADAHVVFGTTARTGGWRKSLVPPVEAGRMAAAELVKGKRVALVFGSEDKG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKG 190
           L NEEI +   +++ P      SLN++QAVL++++EC   S       + +     AT  
Sbjct: 122 LENEEIQMCGQLVTIPTAREMSSLNLAQAVLVLLYECFRQSQPAGHAAHDQVAERHATHA 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E  + +  ++ +L    + +P +     L  +   F + +L R E  +L GI   +   +
Sbjct: 182 EQEALMANIQETLSAIDFLKP-QNPDYWLLPVRRFFAKLDLRRSEFNMLMGICRQVRWIA 240

Query: 251 RQSSR 255
            ++ +
Sbjct: 241 GKAGK 245


>gi|67906560|gb|AAY82666.1| predicted RNA methyltransferase [uncultured bacterium MedeBAC49C08]
          Length = 239

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 3/231 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            +LV+     NIG  ARAM +  +  L LVNP++ +PS ++ + + +   V+D   +  N
Sbjct: 9   FVLVETSHPGNIGACARAMNSMGICNLSLVNPKE-FPSTESETRAKSGKKVLDQANIHDN 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EAI   + +  T+AR+R+    ++       ++NE +   + V I+FG E  GL NE+
Sbjct: 68  LNEAINTSNLVIGTSARSRSMPWPMMEINNLGKIINESLARKEKVSIVFGNEAVGLDNED 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  +  P +    SLN+S AV ++  E  + S  S       +   A+  +    +
Sbjct: 128 LGKCDFHLQIPTSED-SSLNLSHAVQIVAHEIYKGSSSSDLFTQAREVELASSQQKEKLI 186

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +++E+ LE   ++   +  K++   L  +  R +L + E+ +LRGI+S L+
Sbjct: 187 EHIELVLELLDFYD-HQNPKQVPARLRRLIKRMQLDKLEIGILRGILSNLE 236


>gi|289671293|ref|ZP_06492368.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 254

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 8/249 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLGEAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVVLEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPAS 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244

Query: 249 FSRQSSRRN 257
            +  + +  
Sbjct: 245 MAMLAKQAG 253


>gi|218778250|ref|YP_002429568.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759634|gb|ACL02100.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 251

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 126/245 (51%), Gaps = 9/245 (3%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSV 71
           K   I+L +PQ+ ENIG  ARAM N  L +L +V P+     EK    + A A  +IDS+
Sbjct: 8   KKIAIVLCEPQIPENIGGTARAMANMGLERLIVVKPK-SLAQEKIYPMATAGARHLIDSM 66

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  +LK A+ + +++  TTAR  ++ K++   +  A  L         V ++FGRE  G
Sbjct: 67  EVVDDLKTALKEFNWVVGTTARLGSHRKAM-TVENMAAKLISMTGE-NRVALVFGREDRG 124

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+ E++ L + +++      F SLN++QAVLL+ +E  +     S+K  +     A K +
Sbjct: 125 LSTEDVRLCHQLVNIRTAG-FSSLNLAQAVLLVCYELFKA---GSDKPRESTPKLANKFD 180

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L +  D L   L    +  P E  +  +D++   F R  L   +V ++RGI   +D ++ 
Sbjct: 181 LEAMYDQLSELLVRIDFINP-ENPEHWMDNIRRFFTRHPLTARDVKIVRGICRQVDWYTE 239

Query: 252 QSSRR 256
           +  ++
Sbjct: 240 RRFKK 244


>gi|124268025|ref|YP_001022029.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124260800|gb|ABM95794.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 239

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 6/241 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCV 67
           ++A     +LV      N+G  ARAM     + L LV PR  D    E   + ++ A  +
Sbjct: 2   STADPTRFVLVGTSHPGNVGAAARAMKVMGFSDLVLVAPRHADVLVQEDTVALASGAADI 61

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   RV + L EA+  +    AT    R+      AP+     L       Q VG +FG 
Sbjct: 62  LVRARVVATLSEALEGVTHACATAMTPRDFGPRTHAPRALFPEL---AAGRQRVGFVFGS 118

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           ER+GL+NE++   ++ +S P    + SLN++QAV L+ ++  +                A
Sbjct: 119 ERYGLSNEDVYRCHSCLSIPTPADYGSLNLAQAVQLIAYDWRQALGGYPVTPRTPDPALA 178

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
               +   LD+ + +L   G+  P    KK+L  +  +  R +L  EEV LLRGI +++ 
Sbjct: 179 DAAAVQGLLDHWQRALVHIGHLDPA-APKKLLPRVNQLLNRAQLTEEEVHLLRGIATSML 237

Query: 248 K 248
           K
Sbjct: 238 K 238


>gi|289665695|ref|ZP_06487276.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 254

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 8/249 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLGEAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPAS 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244

Query: 249 FSRQSSRRN 257
            +  + +  
Sbjct: 245 MAMLAKQAG 253


>gi|297567088|ref|YP_003686060.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
           DSM 9946]
 gi|296851537|gb|ADH64552.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
           DSM 9946]
          Length = 253

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 16/259 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-------DGWPSEKAR 58
           P L +S +   ++LV PQ   N+G VARAM NF L  L LV P        +   + KA 
Sbjct: 3   PSLLDSIR---VVLVSPQEPMNVGAVARAMRNFGLGDLWLVAPEPTVAETLEAPLNAKAY 59

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFS 117
             +  A+ ++D  R    L EA+ D   +  TT R+R+ +  S+++P+     + +    
Sbjct: 60  HLAVRAEVILDQARRSKTLLEAVQDCVLVVGTTVRSRDVYPGSLVSPRTLTPQVLKAAQR 119

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G  V ++FGRE +GLTN+E+ L+  I+  P  P   +LN++QAVLL+ +E    +    E
Sbjct: 120 G-KVALVFGRETFGLTNDELDLAQYILRIPTAPEQTNLNLAQAVLLVAYELFIGAENPPE 178

Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
                 + PAT+  L +  D LE  + E G+  P  +       L  I  +  L   EV 
Sbjct: 179 ---PPADQPATRDALEALFDDLERYVLEIGFTDP-RRLPYTRRRLRRILHKATLTDPEVK 234

Query: 238 LLRGIVSTLDKFSRQSSRR 256
           +LRG +     +++    +
Sbjct: 235 MLRGFLHQSRWYAKHGKNK 253


>gi|332526708|ref|ZP_08402810.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332111111|gb|EGJ11143.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 231

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 5/227 (2%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLK 78
           +     N+G  ARAM     T L LV PR  D    E+  + ++ A  V+   R+ + L 
Sbjct: 2   ETSHAGNVGAAARAMKVMGFTDLVLVRPRWADVLQREETLAMASGATDVLAGARIVATLA 61

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           EA+  +    AT    R+      AP+     L  R      V  +FG ER GL N+++ 
Sbjct: 62  EALDGVTHACATAMTPRDFGPPTAAPRPHFAELAAR--GDDRVAFVFGPERTGLANDDVY 119

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
             +  +S P +P + SLN++QAV ++ ++  +                A    +   L++
Sbjct: 120 RCHVCLSIPTHPDYGSLNLAQAVQILAYDWRQAQGGFPVVARTADPRLADAAAVQGVLEH 179

Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            + +L E G+  P E  KK++  L  +  R  L  EEV +LRGI   
Sbjct: 180 WQRTLVEIGFLDP-EAPKKLMPRLNQLANRMRLTHEEVQILRGIARA 225


>gi|84624212|ref|YP_451584.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368152|dbj|BAE69310.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 254

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 8/250 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSEAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPAS 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244

Query: 249 FSRQSSRRNN 258
            +  + +  N
Sbjct: 245 MAMLARQAEN 254


>gi|325921164|ref|ZP_08183033.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
           ATCC 19865]
 gi|325548358|gb|EGD19343.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
           ATCC 19865]
          Length = 255

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 116/251 (46%), Gaps = 9/251 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    VF
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPERA-LDEDAYRRSAGAEDVLGDAPVF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P   A     +      V I+FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDAGARRALAKAGEPAEVAIVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------PA 187
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + +       T       PA
Sbjct: 126 DELQLCHAAVHIPSDPAFSSLNLAAAVQVLAYEVRLAQLEAGQAEPAPAATTGALREGPA 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  +L      L  +L++  +       +  +  L  + +R E+  +EV LLRGI+S   
Sbjct: 186 SHAQLEGMFAQLGETLDDIDF-HKGRAPESAMRKLRRLLLRTEMSEQEVRLLRGILSDAQ 244

Query: 248 KFSRQSSRRNN 258
           + +  + R  N
Sbjct: 245 RMAMLAKRAGN 255


>gi|294624425|ref|ZP_06703114.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601274|gb|EFF45322.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 254

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 8/250 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    +++L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L EA+AD   +   TAR R      L P E A     +      V  +FGRER GLTN
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPAEGAQRALAKAGEPAEVAFVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE------QNTPAT 188
           +E+ L +A +  P +P F SLN++ AV ++ +E     + + E           ++ PA+
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVRLAQLAAGEAEPAPAAASGLRDGPAS 185

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +L      L  +L+E  +       +  +  L  + +R E+  +EV L+RGI+S   +
Sbjct: 186 HAQLEGMFGQLGDTLDEIDF-HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQR 244

Query: 249 FSRQSSRRNN 258
            +  + +  N
Sbjct: 245 MAMLARQAGN 254


>gi|15805603|ref|NP_294299.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6458273|gb|AAF10156.1|AE001916_2 RNA methyltransferase, putative [Deinococcus radiodurans R1]
          Length = 255

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 122/259 (47%), Gaps = 12/259 (4%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M+  AP    +A+   ++LV P+   NIG  ARAM N   + LR+V PR  +   +A + 
Sbjct: 1   MSSAAPS--PTAQSLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDYLDSQAVAM 58

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           + +A  ++ S +++  L+EA+AD      T+AR R +  +   P +   ++ E       
Sbjct: 59  AVHAGDLLRSAKIYPTLREALADRDLSVGTSARIRADLPAPRHPAQVRGLVREAAAP--- 115

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             ++FG E  GL N ++      +  P    + SLN++QAVLL+ +E ++      E + 
Sbjct: 116 -ALVFGPEETGLINSDLEQCQVTVRIPT-GDYASLNLAQAVLLVCYEFLQGQDDVPEHSR 173

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           +     AT+ ++ +   +L+ ++   GY     + +  +    ++  R  +   E  + R
Sbjct: 174 QT----ATREDMEAMYGHLQDTMHLIGYTD-AVRGRHTMRLWRAMLDRALMSSAESRMFR 228

Query: 241 GIVSTLDKFSRQSSRRNNV 259
           G++  +     Q S + + 
Sbjct: 229 GLLRQVKWKVEQGSGKAST 247


>gi|242277748|ref|YP_002989877.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           salexigens DSM 2638]
 gi|242120642|gb|ACS78338.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           salexigens DSM 2638]
          Length = 246

 Score =  253 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 4/247 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDS 70
                I+L   +  EN+G  ARAM N     L LV P   W  EKAR  +      +++ 
Sbjct: 2   LDNLSIVLFGTKFPENVGSSARAMTNMGCENLTLVRP-ASWDMEKARPLATVKGRDIVEK 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +   L EA+ D   +Y TTAR     K V+ P  AA ++ E++ +G+ V ++FG E  
Sbjct: 61  ALIADELSEALKDQTRVYGTTARTGGWRKGVMTPSTAAPLIVEQLRAGEKVAVVFGPEDR 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV-KEQNTPATK 189
           GLTN+E  L + +I+ P +    SLN+SQAVL++++EC +N++          +  P + 
Sbjct: 121 GLTNDETQLCSRLINIPTSHENSSLNLSQAVLIILYECFKNALDKPFTPAGPPEERPTSF 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E       L+ +L    +    +     +  +     + ++ R E  LL GI   +   
Sbjct: 181 EEQEILASNLQETLLAIDFL-KADNPDYWMMPVRRFMSKIDIKRNEFNLLMGICRQIKWI 239

Query: 250 SRQSSRR 256
           + Q+ ++
Sbjct: 240 AGQAGKK 246


>gi|188991297|ref|YP_001903307.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733057|emb|CAP51255.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 258

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 114/254 (44%), Gaps = 12/254 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    LT+L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKA-LDEDAYRRSAGAEDVLSDAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L EA+AD   +   TAR R      LAP   A     +      V I+FGRER GLTN
Sbjct: 66  ETLAEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----------VSSEKNVKEQN 184
           +E+ L +A +  P +P F SLN++ AV ++ +E     +            +  +   + 
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAQAAPAADSAGPRE 185

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA+  ++      L  +L+E  +          +  L  + +R E+  +EV LLRGI++
Sbjct: 186 LPASHAQMEGLFGQLGQTLDEIDF-HKGRAPDSAMRKLRRLLLRAEMTEQEVRLLRGILA 244

Query: 245 TLDKFSRQSSRRNN 258
              + +  + +   
Sbjct: 245 DAQRMAGLARQAGT 258


>gi|145589038|ref|YP_001155635.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047444|gb|ABP34071.1| RNA methyltransferase, TrmH family, group 1 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 250

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 8/236 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+     N+G  ARA+       LRLVNP+  D     +A + ++ A  V+++  V  
Sbjct: 12  VLVETSHPGNVGSAARALKTMGFHDLRLVNPKTLDISTQAEAIALASGAVDVLETATVSG 71

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L++A+ +   +   T+R+R      L  + A  +++E + +   V ++FG ER GL NE
Sbjct: 72  SLEDAVQNCSLVLGLTSRDREFGPPALDWESARALISETVANQGQVAMVFGTERTGLENE 131

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-----TPATKG 190
            +AL    +    NP +PSLN++QA+++  +   E     ++  +   +       A   
Sbjct: 132 HLALCTHRVWLNANPDYPSLNLAQALMVCAYALRETFENRTQTTLTSADINDGVDFADPI 191

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            + + L++    LE  GY  P    KK++    ++F R  L +EE+ LLRGI   +
Sbjct: 192 AVAAMLEHWREGLEAIGYLDPAH-PKKLMPRFQALFARSRLRKEEIDLLRGIAKQM 246


>gi|126641510|ref|YP_001084494.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 244

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 20/242 (8%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    L++L LV+P+  +P    ++ +A A  +++ V +   L+EAI D H ++ T+AR+
Sbjct: 1   MKTMGLSKLVLVSPK-TYPHPDIQALAAGAQDLLEQVEIVETLEEAIKDCHLVFGTSARS 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R     +L  + A+    +    GQ + I+FGRE  GLTNEE+AL+N  ++ PVN  +  
Sbjct: 60  RTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEELALANYHLTIPVNSDYGV 119

Query: 155 LNISQAVLLMVWECMENSIVSSE-------------KNVKEQNTPATKGELLSFLDYLEI 201
           LN++QA+ ++ +E   + +   E             ++++      T+ ++  F  +LE 
Sbjct: 120 LNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWDEPLVTQQQMEEFYPHLEK 179

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD-----KFSRQSSRR 256
            L E  +  P E  + +   L  +F R +L R E  LLRGI S +      K+ + SS +
Sbjct: 180 MLTEIEFLDP-ENPRLLPLRLRRLFGRIQLDRMEYHLLRGIFSRVQALTSGKWKKASSDK 238

Query: 257 NN 258
            +
Sbjct: 239 ED 240


>gi|121611165|ref|YP_998972.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121555805|gb|ABM59954.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 266

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 20/266 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             +L++     N+G VARAM       L LV PR  WP+    E+    ++ A  ++   
Sbjct: 4   RFVLINTSHAGNVGAVARAMKTMGFDDLVLVAPR--WPNVLRHEETIQRASGALDLLRQA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----------- 120
           R+ + L +A+  +  + AT    R+       P+     L ++     +           
Sbjct: 62  RIVAGLDQALDGISHLCATAMTARDFGPPTTTPRAHFETLLKKERPVHDSSAPAATRPTG 121

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEK 178
           V  +FG ER+G++N ++   +  +S P  P F SLN+  AV ++ +E          +  
Sbjct: 122 VAFLFGSERFGMSNADVYRCHVTLSIPTQPGFGSLNLGAAVQVIAYEWRMALDGCGLAVP 181

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
           +       A   ++   L++ E +L + G+  P    KK++  L  +F R +L  EE+ +
Sbjct: 182 DGTPARHLADAVQVAGMLEHWEQALTQIGFLDPA-APKKLMPRLQQLFNRAQLAPEEIHI 240

Query: 239 LRGIVSTLDKFSRQSSRRNNVLLQKT 264
           LRGI   +   ++ + +R +    +T
Sbjct: 241 LRGIAKAIIATAQANRQRPSPSSDET 266


>gi|21231714|ref|NP_637631.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768160|ref|YP_242922.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113416|gb|AAM41555.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573492|gb|AAY48902.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 258

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 114/254 (44%), Gaps = 12/254 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
              +LV  Q   NIG  ARAM    LT+L LV P      E A   SA A+ V+    +F
Sbjct: 7   IRFVLVGTQHPGNIGAAARAMKTMGLTRLVLVAPEKA-LDEDAYRRSAGAEDVLSDAPIF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L EA+AD   +   TAR R      LAP   A     +      V I+FGRER GLTN
Sbjct: 66  ETLAEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTGLTN 125

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----------VSSEKNVKEQN 184
           +E+ L +A +  P +P F SLN++ AV ++ +E     +            +  +   + 
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMRLAQLAAEATPAAPAAPAADSAGPRE 185

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PA+  ++      L  +L+E  +          +  L  + +R E+  +EV LLRGI++
Sbjct: 186 LPASHAQMEGLFGQLGQTLDEIDF-HKGRAPDSAMRKLRRLLLRAEMTEQEVRLLRGILA 244

Query: 245 TLDKFSRQSSRRNN 258
              + +  + +   
Sbjct: 245 DAQRMAGLARQAGT 258


>gi|308270583|emb|CBX27195.1| hypothetical protein N47_A12240 [uncultured Desulfobacterium sp.]
          Length = 256

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 126/248 (50%), Gaps = 8/248 (3%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVID 69
           ++    I++V P+  ENIG  ARAM N  +  L +V+P + +  EK R    + +  VID
Sbjct: 5   NSDNITIVMVRPRFPENIGSSARAMLNMGIRNLVVVSP-ENYDLEKIRKLGTHFSSDVID 63

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +++F NLKEA+A  +++  TTAR       +  P   A  L + +     + I+FG E 
Sbjct: 64  GIQLFENLKEALASYNYVVGTTARLGGERAILSTPSGMAERLAD-LSQNNKIAILFGSED 122

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL NE+I L + +I+ P +  F SLN+SQAVLL+ +E     +   E+  K     A++
Sbjct: 123 RGLVNEDIRLCHELINIPSS-DFSSLNVSQAVLLVCYELF---LAGIEEKTKYSPRLASR 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL    + ++  L    Y    E     ++ L   F R +L   EV ++RGI   +D +
Sbjct: 179 HELDGMYEQVKDILVRIDYINN-ENPDYWMNKLRHYFTRLKLRAGEVSIIRGICRQIDWY 237

Query: 250 SRQSSRRN 257
            + S ++ 
Sbjct: 238 GKSSYKKG 245


>gi|303257835|ref|ZP_07343845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Burkholderiales bacterium 1_1_47]
 gi|330998743|ref|ZP_08322471.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859438|gb|EFL82519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Burkholderiales bacterium 1_1_47]
 gi|329576240|gb|EGG57756.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
           excrementihominis YIT 11859]
          Length = 265

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 15/266 (5%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSAN 63
                       +LV P    NIG  ARA+      +L +V+PR  +      A + S +
Sbjct: 1   MDFLPQRGRIRFVLVSPSHPGNIGSAARAIKTMGFDRLYVVSPRHPEYRTDPDAIAFSTH 60

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV---LAPKEAAIVLNERIFSGQN 120
           A  V+ +      L EA+ D+ F  A +  +R     +       E      E     + 
Sbjct: 61  AVDVLQNSVCTETLLEALKDVSFACALSGYDREFGPPLADLQTSCEMVKTCLEE-NPQEE 119

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSE 177
           +  +FG ER GLTNEE+ L     + P NP   SLN++QAV +  ++    +    + + 
Sbjct: 120 IAFVFGTERSGLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTAYQAQQTLRGRALDAH 179

Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
            +  E   PA+   +    ++LE ++   G   P E+ K M+  L  I  R  L   +V 
Sbjct: 180 ASRFEGEAPASVEAIEGLYEHLEEAMIACGALNP-ERPKLMMPKLKRILSRSGLSVPDVD 238

Query: 238 LLRGIVSTL-----DKFSRQSSRRNN 258
           +LRGI + +     ++  R+S +   
Sbjct: 239 MLRGICAAIICPRAERSGRKSKKDGQ 264


>gi|328950108|ref|YP_004367443.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450432|gb|AEB11333.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 235

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV P+   N+GMVARAM NF L +L LV P +     +A   S+ A  V++  R+ 
Sbjct: 2   IRVVLVGPREAANVGMVARAMKNFGLKELVLVAP-EIRDMSEAYRLSSRAHDVLERARIV 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L EAIAD   +  TTAR R  +  + A   AA  L     +   V ++FGRE +GL N
Sbjct: 61  PTLDEAIADCVLVAGTTARRRERYAGLAATPRAAAGLIRAAAARGPVALLFGRENFGLFN 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+   + ++  P  P + SLN++QAVLL+ +E  +     S+     +  PA    L +
Sbjct: 121 EELDRCHYVLHIPTAPDYASLNLAQAVLLVAYELFQ-----SQAGALPETDPAPAASLEA 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +   LE  L E GY  P      ++     +  +  L  EEV +LRG++        + 
Sbjct: 176 YFRDLEAYLIEIGYTDPPRLP-SVMRHFRRMAHKALLTEEEVRMLRGLLRQSRWAMGRR 233


>gi|326317886|ref|YP_004235558.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374722|gb|ADX46991.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 277

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 114/276 (41%), Gaps = 41/276 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+++ 
Sbjct: 4   RFILIQTSHAGNVGAAARAMKTMGFGDLVLVAPR--WPNVLRREETIQRASGALDVLENA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI-------- 123
           R+ + L EA+  +  + AT    R+      +P+E    L  R  +     +        
Sbjct: 62  RIVATLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLVRRQSADAGHPLAELALEGG 121

Query: 124 --------------------------IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
                                     +FG ER+G+ NE++   +  +S P NP F SLN+
Sbjct: 122 VAPVPPTDTDPASAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNL 181

Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKK 217
             A+ ++ +E          ++    + PA   ++   L + E +L + G+  P    KK
Sbjct: 182 GAAIQVIAYEWRLALGGFPVRDAAPASAPADAAQVAGMLAHWERALVDIGFLDPA-APKK 240

Query: 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           ++  L  +F R +   EE+ +LRG+   + + ++  
Sbjct: 241 LMPRLNQLFNRAQPTPEEIHILRGVAKAMSEAAQAK 276


>gi|291296222|ref|YP_003507620.1| RNA methyltransferase TrmH family, group 1 [Meiothermus ruber DSM
           1279]
 gi|290471181|gb|ADD28600.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus ruber DSM
           1279]
          Length = 257

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 14/258 (5%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--------RSSS 61
           +  +   I+LV  Q   NIG  ARAM NF ++ L LV P      + A           +
Sbjct: 2   DWLENIRIVLVGSQEPMNIGAAARAMQNFGISDLWLVAPEPRVREDLARHPGGSLAYRLA 61

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQN 120
            +A+ V+D +RV   L EA+AD   +  TT R R  +   V+ P+  A+ + +    G  
Sbjct: 62  VHAEDVLDRMRVVDTLPEAVADARLVVGTTVREREIYTGPVVGPRPMALRVAQVAPRG-R 120

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++FGRE  GLT +EI LS  I+  P +P  PSLN++QAVLL+ +E      V+     
Sbjct: 121 VAVVFGRETSGLTTDEIDLSQLIVRIPTSPRQPSLNLAQAVLLLCYEIF---GVAQAPPP 177

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
            E    A++  L    D L+  +   G+    ++    +     +  +  L   EV LLR
Sbjct: 178 PEPLQLASQAALQQLFDDLKEYILRIGFTD-EKRLPYAVRRFRRLLHKARLTPGEVQLLR 236

Query: 241 GIVSTLDKFSRQSSRRNN 258
           G +     +++   R+ +
Sbjct: 237 GFLHQSRWYAQHGRRKTD 254


>gi|218296368|ref|ZP_03497111.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
           Y51MC23]
 gi|218243162|gb|EED09693.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
           Y51MC23]
          Length = 244

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 132/255 (51%), Gaps = 16/255 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANA 64
           ++ +     ++LV+PQ   N+G VARAM NF L +L LVNP  R G P + +A   + +A
Sbjct: 1   MREALSRVRVVLVEPQEPMNVGAVARAMRNFGLARLYLVNPAPRVGPPWAREAYWLAVHA 60

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGI 123
           + ++D      +L EA+AD+  + ATT R R  + + + P   A  +  R+ S +  V +
Sbjct: 61  EEILDRAVAVDSLMEALADVELVVATTGRPRKLYPAPVVP---AWEVPARVLSVEGEVAL 117

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FGRE +GLTNEE+AL++ I + P  P  PSLN++QAV++  +E  +            +
Sbjct: 118 VFGRETFGLTNEELALAHVIGTIPTAPEQPSLNLAQAVVVFAYELFKAVGEGRF----PR 173

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              A    L +F + L   + E G+     +    +  L  IF +  L   EV +LRG++
Sbjct: 174 EELAQVAALEAFFEDLGRYVLEIGFTD-QNRFPHAMRRLRRIFHKARLTPGEVQMLRGLL 232

Query: 244 STLDKFSRQSSRRNN 258
                 SR   R+ +
Sbjct: 233 HQ----SRYQMRKKD 243


>gi|119898311|ref|YP_933524.1| RNA methyltransferase [Azoarcus sp. BH72]
 gi|119670724|emb|CAL94637.1| RNA methyltransferase, TrmH family, group 1 [Azoarcus sp. BH72]
          Length = 242

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 4/238 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     I+L       NIG  ARAM    L+QL LV P + +P   A + ++ AD ++ +
Sbjct: 6   ALDRVRIVLSRTSHPGNIGAAARAMKTMGLSQLWLVAP-ESFPDPVADARASGADDLLRN 64

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  +L EA+A      A TAR R         + AA+ L      G +V ++FG E  
Sbjct: 65  ARVVGSLAEALAGTVLAAAVTARRRELALPRRDARAAAVELLRFAEQG-DVALVFGNETS 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+NE++ L    +S P NP F SLN+  AV L+ +E    ++   + +       AT  
Sbjct: 124 GLSNEDVLLCGMPVSIPANPAFSSLNLGAAVQLLCYEMRMAAL-QPQLDADPAPRLATHD 182

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           E+  FL +LE ++ E G+  P    +++L  L  +F R  L +EEV +LRG++S+  +
Sbjct: 183 EVEGFLQHLEQAVTESGFHEP-SNPRRLLPRLRRLFGRVRLEKEEVGILRGMLSSFQR 239


>gi|307354074|ref|YP_003895125.1| RNA methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307157307|gb|ADN36687.1| RNA methyltransferase, TrmH family, group 1 [Methanoplanus
           petrolearius DSM 11571]
          Length = 247

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 16/240 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L +P    NIG  AR M NF    L L+NP D    ++AR+ S++A  V+++ 
Sbjct: 1   MPEIEIVLCEPLYEGNIGFAARVMKNFGFYNLTLINPPDI--GDEARARSSHARDVLENA 58

Query: 72  RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRER 129
           R  ++L E I + + + ATT   ++    ++  P      L + I   +  V IIFGRE 
Sbjct: 59  RHVTSLDEVIEESNILVATTGGLSKTVTHAMRMPYYEPSELRDMIKDIEGRVSIIFGREN 118

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-AT 188
           WGL+NEEI   + I + P +P +P +NIS AV ++V+E           N+     P A+
Sbjct: 119 WGLSNEEIMKCDIICTIPTSPEYPIVNISHAVGVIVYEL---------ANIPRGTYPMAS 169

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           + E+ +F D+L+  L+      P  K++  L  +  IF R  L   EV  + GI+   ++
Sbjct: 170 RIEVDAFYDHLDRFLDTIN--HPDYKRENTLTMMRRIFGRTNLTIREVSTMHGILRRTEQ 227


>gi|46199124|ref|YP_004791.1| putative RNA methyltransferase [Thermus thermophilus HB27]
 gi|55981151|ref|YP_144448.1| hypothetical protein TTHA1182 [Thermus thermophilus HB8]
 gi|46196748|gb|AAS81164.1| putative RNA methyltransferase [Thermus thermophilus HB27]
 gi|55772564|dbj|BAD71005.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 244

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 133/252 (52%), Gaps = 14/252 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWP-SEKARSSSANADCVI 68
            +   I+LV+PQ   N+G VARAM NF L++L +VNP  R G P +++A   + +A+ V+
Sbjct: 1   MERVRIVLVEPQEPMNLGAVARAMRNFGLSRLYVVNPPPRVGPPWAKEAYWLAVHAEEVL 60

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGR 127
           +  +V  +L EA+     + ATT R R  + + +AP   A  + +R+ +    V ++FGR
Sbjct: 61  EKAQVAGSLLEALRGAQLVVATTGRPREVYPAPVAP---AWEVADRVAAFPGEVALVFGR 117

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E +GLTNEE+ L++ I   P  P  PSLN++QAV++  +E  +         ++E   PA
Sbjct: 118 ETFGLTNEELELAHLIGYIPTAPEQPSLNLAQAVVVFAYELFKRQ--GKGVGLREGGEPA 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
               L +F   L   + E G+     +    +  L  IF +  L   EV +LRG++    
Sbjct: 176 PVEALEAFFQDLGRYILEIGFTD-ERRFPYAMRRLRRIFHKAGLTLGEVQMLRGLLHQ-- 232

Query: 248 KFSRQSSRRNNV 259
             SR + RR + 
Sbjct: 233 --SRFAQRRKDD 242


>gi|159903675|ref|YP_001551019.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211]
 gi|159888851|gb|ABX09065.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 246

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 3/240 (1%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + K   ++LV+P    N+G VAR   NF + QLRLV+PR        +  +     ++++
Sbjct: 4   NLKNIRVVLVEPLGEINLGSVARLCKNFGINQLRLVSPRCDPLDITTKKMALKGSDLLEN 63

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            ++ SNL EAI D   + AT  R  +    + +  E A+    +  S   + IIFGRE  
Sbjct: 64  AQIHSNLLEAIDDCVRVVATCGRIDHGEIPLHS-SETALNWLLQGSSKDPIAIIFGREDR 122

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATK 189
           GL+N+E+ L+  +I+ P +  +PSLN+S AV +++ +    +         KE ++ +T 
Sbjct: 123 GLSNQELQLAQKVITLPSSLTYPSLNLSHAVAIILHDLIRYSQKYEYSIKNKELHSLSTP 182

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            EL + LD  E  L E G+      K + +  +  +  R E+  EEV L+RGI+     F
Sbjct: 183 KELSNCLDQTEDFLLEIGFLHKHTSKSR-MSKIKGLLQRAEVRSEEVALIRGILRQTKWF 241


>gi|33600713|ref|NP_888273.1| methyltransferase [Bordetella bronchiseptica RB50]
 gi|33568313|emb|CAE32225.1| probable methyltransferase [Bordetella bronchiseptica RB50]
          Length = 258

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 22/256 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65
           +  +      I+  P    N+G  ARA+      +L LV PR  D     +A + ++ A 
Sbjct: 1   MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGAL 60

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGI 123
            V++   V   L+EA+A +   +A TAR R+        +EAA +    +       V I
Sbjct: 61  DVLERAAVHDTLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAI 120

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           + G ER GLTN +I L + I   P NP + SLN++QA+ L  WE     +  + + +   
Sbjct: 121 VLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQPL--- 177

Query: 184 NTPATKGE-------------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
             PA+  +             + + L + E +L   G+  P    KK++  +  +  R  
Sbjct: 178 -LPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSA 235

Query: 231 LMREEVFLLRGIVSTL 246
           L R+EV +LRG+ + +
Sbjct: 236 LSRDEVDMLRGVCTAM 251


>gi|307545466|ref|YP_003897945.1| SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
 gi|307217490|emb|CBV42760.1| putative SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
          Length = 244

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 9/230 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV      NIG  ARAM    LT L LVNPR  +P  +A   +A A+ V+D  
Sbjct: 2   LSNIRIVLVQTYHPGNIGASARAMKTMGLTDLVLVNPRC-FPDPEASRLAAGAEDVVDQA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNF-KSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           RV ++L EA+AD   +   +AR R+        P E A  L +       V ++FGRER+
Sbjct: 61  RVVTSLSEAVADCVQVVGASARLRSYPLPHYDEPAEMATSLVDNARE-APVALVFGRERF 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE----CMENSIVSSEKNVKEQNTP 186
           GLTN+EI   +  +S P NP +  LN+SQAV ++ +E             +         
Sbjct: 120 GLTNDEIRDCSHQVSIPANPDYGVLNLSQAVQVLAYETFGAWRRLPDSDYQHPRHASVPL 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
            T+ +L  F D+L   ++  G+        +  + L ++F R +  R ++
Sbjct: 180 PTRQQLGHFHDHLSRVMQASGFITQPHA--RTEEQLRALFDRAQPTRRDI 227


>gi|160897751|ref|YP_001563333.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
 gi|160363335|gb|ABX34948.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
          Length = 275

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 110/267 (41%), Gaps = 39/267 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             +L++     N+G  ARA+       L LV PR  WP+    E+    ++ A  V+ + 
Sbjct: 4   RFVLIETSHAGNVGAAARALKTMGFDDLVLVRPR--WPNVLRKEETIQRASGALDVLGNA 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-------------AIVLNERIFSG 118
           RV   L+EA+  +  + AT    R+       P++              A  +++     
Sbjct: 62  RVVETLEEALDGISHLCATAMTPRDFGPPTRTPRQHFELLLSGALDVLAAPDVSDAADEA 121

Query: 119 QN-------------------VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
                                V  +FG ER+G++N+++  S+  +S P NP F SLN+  
Sbjct: 122 APPTDASVSAPAPAPRCNQSGVAFLFGCERFGMSNDDVYRSDVALSIPSNPQFGSLNLGA 181

Query: 160 AVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML 219
           A+ ++ +E  +                A   ++   L + E +L   G+  P    KK++
Sbjct: 182 AIQVVAYEWRQALGGFPVVEHTPAPQRADAAQVAGMLGHWEQALAHIGFLDPA-APKKLM 240

Query: 220 DDLYSIFIRPELMREEVFLLRGIVSTL 246
             L  +F R +L  EE+ +LRG+   +
Sbjct: 241 PRLNQLFNRSQLTAEEIHILRGVAKAM 267


>gi|294788626|ref|ZP_06753868.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella
           muelleri ATCC 29453]
 gi|294483503|gb|EFG31188.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Simonsiella
           muelleri ATCC 29453]
          Length = 268

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 119/260 (45%), Gaps = 21/260 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---------------- 49
           P + +      IIL       NIG  ARAM    L+QL LV P                 
Sbjct: 2   PAVPDYLANIRIILSRTSHPANIGSAARAMKTMGLSQLVLVAPNLMATPMTTEPPEFSAE 61

Query: 50  ---DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
                   E++   ++ A  +++  ++ + L EA+       A T+R R     +  P+E
Sbjct: 62  HADTFRLPEESFILASGAVDILERAKIVATLPEALVGTTLSCALTSRRRELTAPLQTPRE 121

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               L     +GQ V ++FG E +GL+ +E+   N +++   NP + SLN++QAV ++ +
Sbjct: 122 LTPNLLAAAQAGQQVALVFGNETFGLSIDEVQHCNRLMTIAGNPNYFSLNLAQAVQVVCY 181

Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
           E            + E++  AT  ++   + +LE ++E   +F     +++M+  L+S+F
Sbjct: 182 ELFSQVNADMSHLIPERH-LATADQVSGMVQHLEKAMEHLDFFH-HRNQERMIRRLHSLF 239

Query: 227 IRPELMREEVFLLRGIVSTL 246
            R +   E++ +LRG  + +
Sbjct: 240 NRADTTTEDIDILRGFYNKI 259


>gi|168702027|ref|ZP_02734304.1| RNA methyltransferase, TrmH family, group 1 [Gemmata obscuriglobus
           UQM 2246]
          Length = 269

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 8/267 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +      ++LV P    N+G  AR M NF L+ L LV P        AR  + +   V
Sbjct: 1   MTDLLTRCRVVLVRPHYAGNLGATARVMRNFGLSDLVLVAPYASTGDLDARRMATHGLAV 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKS--VLAPKEAAIVLNERIFSGQNVGIIF 125
           +D+ RV  +L +A++D  F  AT++     F+S  +    E    L     +G  V ++F
Sbjct: 61  LDAARVVPDLGDALSDCVFSLATSSLTAGVFRSGTIGTAAEQMPELLAAAEAG-PVAVVF 119

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI----VSSEKNVK 181
           G E  GL+NEEI   + +++ P +P   SLN++QAV +  +E  +        +  K   
Sbjct: 120 GPEPHGLSNEEIGRCHGLVNVPSDPASGSLNLAQAVAICCYEFRKAWSKRLNDARGKPEI 179

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            +   A   +     ++L  +L E GY    EK   ++  +  +  R     +EV +L G
Sbjct: 180 PERAVAPFADQDRMFEHLRHALTEVGYLF-GEKGDSLMHAIRQLVGRAMPTPQEVKILHG 238

Query: 242 IVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           +   L   SRQ  R  +    + ++ +
Sbjct: 239 LARQLLWASRQMKRDGDTDAPEADRRD 265


>gi|15892083|ref|NP_359797.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
 gi|15619205|gb|AAL02698.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
          Length = 221

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 137/227 (60%), Gaps = 8/227 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++
Sbjct: 2   NPIIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+
Sbjct: 62  FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEEIA +N II+      F SLNI+QAV+++ +E + NS  +  +++      ATK E+ 
Sbjct: 118 NEEIAFANKIITINTT-EFSSLNIAQAVIIICYELLRNS--TPREDIHNIQKLATKEEIE 174

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLL 239
            FL  L   L++ G+F+  +KK  M   + +IF R   L   EV  L
Sbjct: 175 HFLVNLFGKLDKAGFFKAPDKKTAMQQSITNIFTRINSLSSPEVQTL 221


>gi|33592943|ref|NP_880587.1| methyltransferase [Bordetella pertussis Tohama I]
 gi|33572591|emb|CAE42183.1| probable methyltransferase [Bordetella pertussis Tohama I]
 gi|332382355|gb|AEE67202.1| methyltransferase [Bordetella pertussis CS]
          Length = 258

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 22/256 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65
           +  +      I+  P    N+G  ARA+      +L LV PR  D     +A + ++ A 
Sbjct: 1   MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGAL 60

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGI 123
            V++   V   L+EA+A +   +A T R R+        +EAA +    +       V I
Sbjct: 61  DVLERAAVHDTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAI 120

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           + G ER GLTN +I L + I   P NP + SLN++QA+ L  WE     +  + +++   
Sbjct: 121 VLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSL--- 177

Query: 184 NTPATKGE-------------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
             PA+  +             + + L + E +L   G+  P    KK++  +  +  R  
Sbjct: 178 -LPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSA 235

Query: 231 LMREEVFLLRGIVSTL 246
           L R+EV +LRG+ + +
Sbjct: 236 LSRDEVDMLRGVCTAM 251


>gi|218886256|ref|YP_002435577.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757210|gb|ACL08109.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 266

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 7/242 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVI 68
              ++LV  +  EN+GMVARA  N     + LV+P      DG P++    ++     ++
Sbjct: 4   NLTVVLVKTRFPENVGMVARACANMGARDIVLVDPERWSEADGDPAKAVPLATPKGQDIL 63

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             VRV   L EA+AD   ++ TTAR     + +L+P+ AA      +  G  V ++FG E
Sbjct: 64  SGVRVVGTLAEAVADCAVVFGTTARTGGWRRELLSPERAAAEACPVLAGGDRVAVVFGPE 123

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPA 187
             GLTN+EI   + +++ P  P   SLN++QAVL++++EC++ +            +  A
Sbjct: 124 DRGLTNDEIEHCHRLLTIPTAPEASSLNLAQAVLVVLYECLKGTATHPFRPGPAPDSRLA 183

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              EL    D L  +L    Y R  +     +  +     R  L R E  L+ G+   + 
Sbjct: 184 NHAELELLHDTLRDTLLAIDYLR-ADNPDYFMMPVRRFLGRTRLRRHEFDLVMGVCRQVK 242

Query: 248 KF 249
           + 
Sbjct: 243 RM 244


>gi|332528697|ref|ZP_08404674.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332041763|gb|EGI78112.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 9/247 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
             IL++P    N+G  ARA+      +L LV PR  +    ++    ++ A+ V++  R+
Sbjct: 8   RFILIEPSHAGNVGAAARAIKTMGFEELVLVRPRWANVLRRQETIERASGANDVLNRARI 67

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWG 131
              L EA+  +  + AT    R+      AP+E              Q +  +FG ER+G
Sbjct: 68  VETLDEALDGMTHLCATAMTPRDFGPPTRAPREHFAQFVAAAPTEESQGIAFLFGSERYG 127

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----KNVKEQNTPA 187
           + NE++  ++  +S P +P F SLN++ A+ ++ +E  +                 +  A
Sbjct: 128 MKNEDVYRAHVCLSIPTHPRFGSLNLAAALQVIAYEWRQALSARFGGFEIAPATAPSVLA 187

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              ++   L +LE +L    +  P    KK++  L ++F R +L +EEV +LRG+   + 
Sbjct: 188 DAPQIAGLLTHLEQALVAVDFLDPA-APKKLMPRLNALFNRAQLTQEEVHILRGVAKAML 246

Query: 248 KFSRQSS 254
           + + ++ 
Sbjct: 247 ETAARAK 253


>gi|303248777|ref|ZP_07335029.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           fructosovorans JJ]
 gi|302489864|gb|EFL49793.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           fructosovorans JJ]
          Length = 274

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 108/249 (43%), Gaps = 2/249 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L  P+  EN+G  ARA  N  +++L LV P           +++    +++ +
Sbjct: 26  LENLSIVLFRPKFSENVGAAARACANMGVSRLLLVEPSAFDLDRARPMATSKGGLLLEKL 85

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +  L EA+A    ++ TTAR       ++ P++AA      + +G  V ++FG E  G
Sbjct: 86  EFYPTLAEAVAGAELVFGTTARLGGWRTGIITPEQAAASACPTLAAGGKVAVVFGPEDAG 145

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKG 190
           L+N E  L   +++ P +    SLN++QAVL+M +E  + +     +          T  
Sbjct: 146 LSNHETQLCGRLVNIPTSDAATSLNLAQAVLVMCYEMFKAATGHVGEPAGPTPARTVTHA 205

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E  +    L  +L    + +P +     +  +     R  L R+E  LL G+   +    
Sbjct: 206 EREALFAALRRTLLSIDFIKP-DNPDYWMLPVRRFIDRVGLKRQEYSLLMGVCRQIKWAL 264

Query: 251 RQSSRRNNV 259
               +++  
Sbjct: 265 GSGGKKDQA 273


>gi|113867235|ref|YP_725724.1| rRNA methyltransferase [Ralstonia eutropha H16]
 gi|113526011|emb|CAJ92356.1| rRNA methyltransferase [Ralstonia eutropha H16]
          Length = 299

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCV 67
           N+      +LV+     N+G VARA+       L LV+PR  D      A + ++ AD V
Sbjct: 45  NAFGRVRFVLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPDVLRHSDAVAMASGADDV 104

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +    +   +  A+A      A TAR+R      L P+ AA    + +     V  +FG 
Sbjct: 105 LAGALIVDQVDAALAGAALTVAMTARHREFGPPRLLPRAAAERARQTLSGSGGVAFVFGN 164

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQN 184
           ER+GL NE +   NA+   P NP + SLN++QAV L+ +E     + ++     N+    
Sbjct: 165 ERYGLPNEVVERCNAVTHIPANPAYTSLNLAQAVQLIAYEMRLALLEAAPDAGANIGYAG 224

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            PAT  ++ +   +L+  LE  G+  P    ++++  L  +  R  L REEV +LRGI  
Sbjct: 225 EPATAEQVEAMFGHLQTGLEAIGFLDP-SNPRRLMTRLRRLLARSGLEREEVNILRGIAK 283

Query: 245 TL 246
            +
Sbjct: 284 HM 285


>gi|33596879|ref|NP_884522.1| methyltransferase [Bordetella parapertussis 12822]
 gi|33573580|emb|CAE37574.1| probable methyltransferase [Bordetella parapertussis]
          Length = 258

 Score =  244 bits (624), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 22/256 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65
           +  +      I+  P    N+G  ARA+      +L LV PR  D     +A + ++ A 
Sbjct: 1   MTQAFSRVRFIMTQPSHPGNVGSAARAIKTTGFGELVLVAPRFPDMTAQPEAVTLASGAL 60

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGI 123
            V++   V   L+EA+A +   +A TAR R+        +EAA +    +       V I
Sbjct: 61  DVLERAAVHDTLEEALAPVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGVVAI 120

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           + G ER GLTN +I L + I   P NP + SLN++QA+ L  WE     +  + +++   
Sbjct: 121 VLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALLAGTGQSL--- 177

Query: 184 NTPATKGE-------------LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE 230
             PA+  +             + + L + E +L   G+  P    KK++  +  +  R  
Sbjct: 178 -LPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAH-PKKLMPRMKHLLTRSA 235

Query: 231 LMREEVFLLRGIVSTL 246
           L R+EV +LRG+ + +
Sbjct: 236 LSRDEVDMLRGVCTAM 251


>gi|78356021|ref|YP_387470.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218426|gb|ABB37775.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 253

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 3/248 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV+P+  ENIGMVARA  N  + +L +V P    P +    ++     V++SV
Sbjct: 3   LENVAVVLVEPRFPENIGMVARACANMGVNELVVVAPERWNPEKSVPLATPKGVPVLESV 62

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R    L  A+A    +  TTAR     + +L+P+ AA V+ + + +G  V I+FGRE  G
Sbjct: 63  RHEDTLAAALAPYTLVLGTTARTGGWRRQILSPETAAPVVQQEVAAGGRVAIVFGREDRG 122

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATKG 190
           LTNEE  + + +++ P +    SLN++QAVL++++EC + S      K+    +   T  
Sbjct: 123 LTNEETEVCSRLVTIPTSEA-SSLNLAQAVLILLYECFKLSDARPFHKSAGALSRVVTHE 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E       L+ +L +  Y R  +     +  +     +  L R E  +L GI   + + +
Sbjct: 182 EQEILFAALQDTLLDIDYLR-EDNPDYFMLPVRRFMQKASLRRHEFDMLMGICRQVRRLA 240

Query: 251 RQSSRRNN 258
           R ++ + +
Sbjct: 241 RVAAEKED 248


>gi|117924869|ref|YP_865486.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
 gi|117608625|gb|ABK44080.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
          Length = 258

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 5/242 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +     GPV IL  P  G N+G   RA+ N     LRLV PR  +P     + +A     
Sbjct: 6   MNEPLSGPVFILDHPSHGGNVGAALRAITNMGFEHLRLVRPR-FFPHPDVEAWAAGTAAR 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFG 126
           I +++VF +L  A ADL+ + A T R R     V++P+E  + L  ++  +   VGI+FG
Sbjct: 65  IPTIQVFDSLDAATADLNHLVAVTRRGRGQRHQVMSPRELGVRLDPKQQLASSRVGILFG 124

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS--SEKNVKEQN 184
            ER GL   ++   + I + P +    SLN+SQAV+L+ +E M    +      + +  +
Sbjct: 125 TERTGLETADVERCHWICTIPTHGEKGSLNLSQAVMLVAYELMLGQGLGEVPVHDPQRDD 184

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             A++ E++ F D+L+  L +  + +P ++ K+M+  L ++F R  L R E+ +LRGI++
Sbjct: 185 ALASQDEMVRFFDHLQDVLMQIDFIQP-DRYKQMMGTLKALFNRAALDRREITILRGILT 243

Query: 245 TL 246
            +
Sbjct: 244 EV 245


>gi|241763475|ref|ZP_04761528.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii
           2AN]
 gi|241367316|gb|EER61647.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax delafieldii
           2AN]
          Length = 283

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 32/267 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVIDSV 71
             IL+      N+G  ARAM       L LV PR  WP+    E+    ++ A  V+++ 
Sbjct: 19  RFILIQTSHAGNVGAAARAMKTMGFDDLVLVAPR--WPNVLRREETIQRASGALDVLENA 76

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-------------- 117
           R+ + L EA+  +  + AT    R+      AP+    +L +R  +              
Sbjct: 77  RIVATLDEALDGMSHLCATAMTPRDFGPPTAAPRAHFEMLLKRERATLNGQALQAQNASN 136

Query: 118 -----------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                         V  +FG ER+G+ NE++   +  +S P NP F SLN+  A+ ++ +
Sbjct: 137 PDAAGPEAAGAEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPRFGSLNLGAAIQVVAY 196

Query: 167 ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
           E  +     + +        A   ++   L + E +L   G+  P    KK++  L  +F
Sbjct: 197 EWRQALGGFAVQAATPDRVQADAAQVAGMLAHWEQALAAIGFLDPA-APKKLMPRLNQLF 255

Query: 227 IRPELMREEVFLLRGIVSTLDKFSRQS 253
            R +L  EE+ +LRG+   + + ++  
Sbjct: 256 NRAQLGAEEIHILRGVAKAMIEAAQAK 282


>gi|261856767|ref|YP_003264050.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
           neapolitanus c2]
 gi|261837236|gb|ACX97003.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
           neapolitanus c2]
          Length = 271

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 14/254 (5%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P +P +        I+L       N+G VARAM N  L +L LV+P+     ++A +++ 
Sbjct: 10  PDSPDVHADR--IQIVLCGTSHTGNLGAVARAMKNMGLHRLVLVSPKTAI-DDQALATAK 66

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           +A  ++++ R   NL +A+AD   ++ATTAR R+    V++ ++AA  +     +G  + 
Sbjct: 67  HAADILNTARQVDNLPDALADSVEVWATTARPRDLHLPVMSARDAAETIAASPSTG-VIS 125

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKNV 180
           I+FG ER GLTN+EI+ +  II  P NP +P LN+ QAV ++ +E      +  S+ +  
Sbjct: 126 IVFGAERTGLTNQEISWAQRIIEIPANPDYPVLNLGQAVQIVAYEWRMAHGTARSAPQPN 185

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYF--------RPVEKKKKMLDDLYSIFIRPELM 232
            +    AT  +  +F   L   L+   +F             +++++  L  +  R    
Sbjct: 186 IDSTELATTAQWAAFEKRLTEQLDRTSFFHRTGSAEKDIAANRERLMARLRVLCRRANPT 245

Query: 233 REEVFLLRGIVSTL 246
           R E+ +++GIV  L
Sbjct: 246 RNELAVMQGIVRAL 259


>gi|119713222|gb|ABL97289.1| RNA methyltransferase [uncultured marine bacterium HF10_05C07]
          Length = 243

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            ILV+P    NIG  ARA+ N    +L LVNPR    +E+A   + +A  ++++  ++ +
Sbjct: 11  FILVEPSHPGNIGACARAIKNMGFKKLALVNPRKKI-TEEAFHRAKSAKDILENTVIYKS 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNE 135
              AI D + I AT+AR R          + +  +  +I +     GI+FGRE  GL+NE
Sbjct: 70  FDLAIGDKNLILATSARERTIPWPTFYVDKISDEVKSQIKTKTTKTGIVFGREDNGLSNE 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+   +  +  P +  + SLN+S A+ ++ +E  +    +      E     +  E    
Sbjct: 130 ELQKCHYHLIIPASEEYSSLNLSHALQIVAFEIRKIVFDNKILKT-EVREVVSNLENEKL 188

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L++L   L++  ++ P    K++   +  +  +  L + E+ +LRG +S +  F +
Sbjct: 189 LEHLMEVLKKIDFYDPKSS-KQVKTRIDRLIKKTRLDKIEMGILRGFLSKIIDFEK 243


>gi|320335161|ref|YP_004171872.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319756450|gb|ADV68207.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           maricopensis DSM 21211]
          Length = 261

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 11/240 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV P+   N+G  ARAM N   ++LRLV PR    S +AR+ + +A  ++++ RV+ 
Sbjct: 4   AVVLVSPKHPGNVGSAARAMLNMGASELRLVAPRCDHLSSEARALAVHAAGLLENARVYG 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+AD      T+AR R++      P      L   + +     ++FG E  GL+++
Sbjct: 64  TLAEALADRDVAVGTSARERSDLPPPRTP----ATLRPMVRAAARPALVFGPEETGLSSD 119

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++ L  A +  P    + SLN++QAVLL+ +E ++        +       A + E    
Sbjct: 120 DLQLCQATVRIPT-GEYASLNLAQAVLLVCYEFLQ-----GGDDTVVARKVADRAEYEGM 173

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
             +L  ++ E GY   V + +  +    +   R +L   EV L+RG++      +RQ  R
Sbjct: 174 YAHLYTTMLEVGYTDDV-RGRHTMRLWRAALDRAQLSTPEVRLVRGLLQQARWAARQPDR 232


>gi|294084245|ref|YP_003551003.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663818|gb|ADE38919.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 256

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 8/244 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+IL  PQ+ ENIG  ARAM N  L  LR+V PRDGWP+  A   +A    +I++ +VF
Sbjct: 12  PVVILARPQMAENIGATARAMMNCGLRDLRIVKPRDGWPNPVALPMAAGGKSIIETAQVF 71

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A  D+ F+ A TAR R+       P+     L ++   G  V ++FG E  GL N
Sbjct: 72  DTLADATHDICFMAAATARQRDMPIRASEPRAIGSELVQKAKKG-RVALLFGPEASGLDN 130

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----- 189
            E+ L++  +S  +NP +PSLN++QAVLL+ WE    ++     + + + +  +      
Sbjct: 131 NEVVLADVAVSAALNPAYPSLNLAQAVLLLAWEWRVAALSDIGDDDRSEPSDDSADDDDA 190

Query: 190 --GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
              E   F   LE +L++ G+F   E    +  ++ ++  R    R+E+  L GI+  L 
Sbjct: 191 PIKERDYFFQRLENALDDSGFFSSTEMAPAVKRNIRALINRATPSRQEIGTLHGIIQALT 250

Query: 248 KFSR 251
              R
Sbjct: 251 SKRR 254


>gi|94986089|ref|YP_605453.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
           11300]
 gi|94556370|gb|ABF46284.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
           11300]
          Length = 254

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 7/246 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++LV P+   NIG  ARAM N   + LR+V PR      +A + + +A  ++ S R+
Sbjct: 2   NLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDPLDSQAVAMAVHAADLLRSARI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +  L+EA+AD      TTAR R +      P +   ++           ++FG E  GL 
Sbjct: 62  YPTLREALADRDLSVGTTARLRADLPPPRHPAQVRPLVRAASAP----ALVFGPEETGLV 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGEL 192
           N ++      +  P    + SLN++QAVLL+ +E ++    ++ K+ +  +   AT+ E+
Sbjct: 118 NSDLEQCQVTVRVPTA-EYASLNLAQAVLLVCYEFLQAQDETAPKSTRTAERKTATREEM 176

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +   +L  ++   GY     + +  L    ++  R  +   E  L RG +  +      
Sbjct: 177 EALYGHLHETMALIGYTD-AVRARHTLRLWRAMLDRALMSSAESRLFRGFLRQVRWKVED 235

Query: 253 SSRRNN 258
           ++RR  
Sbjct: 236 AARRGT 241


>gi|219851926|ref|YP_002466358.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
           palustris E1-9c]
 gi|219546185|gb|ACL16635.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
           palustris E1-9c]
          Length = 249

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 15/241 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G VAR M NF  ++L L+NP       +AR+ +++A  ++DS RV  +
Sbjct: 6   IVLVEPLYEGNVGSVARVMKNFGFSRLVLINPC--PLGNEARARASHAQDLLDSARVC-S 62

Query: 77  LKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134
           L+E  A+     ATT   ++     +  P      +   I      + I+FGRE WGL N
Sbjct: 63  LEEVYAESALTIATTGELSKTICNPMRMPYYEPSEIRSMIAEIDGTISILFGRENWGLNN 122

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            E+A S+ I + P +P +P LN+S AV L+ +E             +     A + E+  
Sbjct: 123 GEVAASDLICTIPTSPEYPILNLSHAVGLVCYEL--------AHLPRGIYLLADRFEMTC 174

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
             D++   L++     P  K++  +  +  +  R ++   EV  L G++   + +     
Sbjct: 175 LYDHISSFLDQID--HPPYKREVTMLTIRRLLARTQMTPREVSTLHGLLRRTEWYLNGGQ 232

Query: 255 R 255
           +
Sbjct: 233 Q 233


>gi|116748737|ref|YP_845424.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116697801|gb|ABK16989.1| RNA methyltransferase, TrmH family, group 1 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 257

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 6/255 (2%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++ + +   I+L +P   ENIG  AR+  N  + +L +VNP D       + ++  A  V
Sbjct: 1   MRVNLENIAIVLNEPHYPENIGAAARSAKNMGIRRLLVVNPLDFDLDRVLKMATHAARDV 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++++ ++ +L+ A+A    +  TTAR  +  + V  P++ A  L   I       I+FG 
Sbjct: 61  VEAMEIYDDLRNALAPFRHVVGTTARLGSRRQRVRNPRQMADELV-SISRENEAAILFGT 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E  GLTNE++   + +++ P    F S+N++QAV+++ +E    +    ++ V      A
Sbjct: 120 ESSGLTNEQLRFCDFLVTIPTA-DFASINLAQAVMIVAYELYTANREEPQRFVP---RLA 175

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            + EL    D L  +L    +    +     +  +   F R  L   EV ++RGI   +D
Sbjct: 176 ARRELEGMYDQLRDTLARINFIN-QDNPDYWMLSVRRFFSRIGLRAGEVKIVRGICRQID 234

Query: 248 KFSRQSSRRNNVLLQ 262
            +  +        + 
Sbjct: 235 WYCDRKDEDGPASVP 249


>gi|33863403|ref|NP_894963.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
 gi|33640852|emb|CAE21307.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 249

 Score =  241 bits (617), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   NF + +LRLV+PR      +AR  + +   ++   + FS
Sbjct: 11  TVVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADPEARRMAVHGVAMLKQAKQFS 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD H + A+  R  +    +  P++A   L E   S   V ++FGRE  GLTNE
Sbjct: 71  CLLDAVADCHRVVASCGRLDHGNIPLQTPEQAVPWLLES-MSAAPVALVFGREDRGLTNE 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGELLS 194
           E+ L+  +++   +  +PSLN+S AV +++ E        + +  +     PA+  +L +
Sbjct: 130 ELQLAQRVLTLHSSHGYPSLNLSHAVAIVLHELQRCQGQGTLREGQSAWPDPASPRQLDA 189

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            L   +  L E G+      + + +  +  +  R  +  EEV LLRG+V  L   
Sbjct: 190 CLTDAQDLLLEVGFLLSHTAQAR-MAKVRGLLQRAAVRPEEVALLRGMVRQLRWA 243


>gi|149190103|ref|ZP_01868380.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
 gi|148836133|gb|EDL53093.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
          Length = 217

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 107/213 (50%), Gaps = 5/213 (2%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
             L+Q+ LV+P+    ++    ++  +D  +   ++  +L++AI D   +  ++AR+R  
Sbjct: 2   MGLSQMVLVDPQCEVDAQAIALAAGASDIAL-GAQIVGSLQDAIEDCGLVVGSSARSRTL 60

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
              ++ P+E              V ++FGRER GLTNEE+ L +     P NP + SLN+
Sbjct: 61  DWPMIEPRECGEKF-AIEGEQHPVALVFGRERTGLTNEELQLCHFHTCIPANPEYSSLNL 119

Query: 158 SQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKK 215
           + AV  + +E     +  V+++   +EQ       EL  F  +LE  + +  +    +K 
Sbjct: 120 AMAVQTLSYEVRVAHLQRVANQFPEQEQAEYPRHKELELFYQHLEKVITDTQFISK-DKP 178

Query: 216 KKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +++ L  +F R     +E+  LRGI+++++K
Sbjct: 179 GLVMNKLRRMFSRARPESQEINTLRGILTSIEK 211


>gi|298674492|ref|YP_003726242.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
           evestigatum Z-7303]
 gi|298287480|gb|ADI73446.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
           evestigatum Z-7303]
          Length = 232

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 14/238 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G +AR M NF L +L LVNP       +AR+ S++A  ++++ +V + 
Sbjct: 7   IVLVEPLYQGNVGSIARVMKNFGLCELVLVNPCK--LKGEARAMSSHARDILENAKVTNT 64

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134
            KEA+ D   +  TT   +  + + +  P      L  R+      V I+FGRE  G TN
Sbjct: 65  FKEAVKDASLVVGTTGMTSSKDDEHIRNPSYTPKELKNRLEGMDGKVAILFGREDNGFTN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+ L + I+  P N  +P +NIS +  ++ +E   N     +      +       L  
Sbjct: 125 DELRLCDMIVHIPANEEYPIMNISHSAAVIFYEL-SNIQSGEKPFADPFDLKLLHNHLNE 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            L  LE          P  KK K L     +F R +L   EV  LRG++  + +  + 
Sbjct: 184 LLKQLE---------YPSHKKDKTLLMFRRVFGRAQLTNREVQTLRGVLRIIQRRIKN 232


>gi|171463671|ref|YP_001797784.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193209|gb|ACB44170.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 250

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 112/236 (47%), Gaps = 8/236 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +LV+     N+G  ARA+     + LRL++P+  D   S +A + ++ A  +++      
Sbjct: 12  VLVETSHPGNVGSAARALKTMGFSDLRLISPKIKDIGSSPEAIAFASGAADILEKSVESG 71

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L   +     +   T+R+R      +  + A  ++   +     V ++FG ER GL NE
Sbjct: 72  SLASTVKGCSLVMGLTSRDREFGPPAMDWESARSLIASTVQRQGKVALLFGPERTGLDNE 131

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-----KNVKEQNTPATKG 190
            +AL    +    NP +PSLN++QA+++  +   E+ I          N +E    A   
Sbjct: 132 HLALCTHRVWLDANPNYPSLNLAQALMICAYTLRESLIRDPGASNSLANREEMADFADPA 191

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
            + + L++    LE  GY  P    KK++  + ++F R  L +EE+ LLRGI   +
Sbjct: 192 AVAAMLEHWREGLEAIGYLDPA-NPKKLMPRIQALFARSHLHKEEIDLLRGIAKQM 246


>gi|124022607|ref|YP_001016914.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303]
 gi|123962893|gb|ABM77649.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 249

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 3/235 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   NF + +LRLV+PR      +AR  + +   +++  + FS
Sbjct: 11  TVVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADAEARRMAVHGAAMLEQAKQFS 70

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+AD H + A+  R  +    +  P++A   L E + +   V ++FGRE  GLTNE
Sbjct: 71  CLLDAVADCHRVVASCGRLDHGNIPLQPPEQAVPWLLESMGA-APVALVFGREDRGLTNE 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-EQNTPATKGELLS 194
           E+ L+  +I+   +  +PSLN+S AV +++ E        + +  +     PA+  +L +
Sbjct: 130 ELQLAQRVITLHSSYGYPSLNLSHAVAIVLHELQRCQGQGTLRGGQSAWPDPASPRQLDA 189

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            L   +  L E G+      + + +  +  +  R  +  EEV LLRG+V  L   
Sbjct: 190 CLTDAQDLLLEVGFLLSHTAQAR-MAKVRGLLQRAAVRPEEVALLRGMVRQLRWA 243


>gi|319940963|ref|ZP_08015300.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805536|gb|EFW02331.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
           3_1_45B]
          Length = 288

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSAN 63
             +   A+    IL +P    NIG  ARA+       LR+V PR+      E+A + + +
Sbjct: 2   QSVPELARRVCFILCEPAHPGNIGSAARAIKTMGFRDLRVVAPREADYRTHEEALAYATS 61

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVG 122
           +  V+++ + ++ L +A+  + + +A T  +R     +   ++AA     R+ + + ++ 
Sbjct: 62  SADVLEASKSYATLAQALEGVTYAWAMTGYDREFGAPLTPMRQAASETASRLSALEGSIA 121

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE----- 177
            +FG ER GLTNEE+ L     + P +P  PSLN+SQAV +  +E     + +       
Sbjct: 122 FVFGTERSGLTNEEVCLCQGCAAIPADPASPSLNLSQAVQIAAYEMQLALLDARGDAGAL 181

Query: 178 ---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
              +       PA    +  F D+ E ++   G   P  K +  ++    +F R  L + 
Sbjct: 182 YDWQGRFAHEEPAPLEAVEGFFDHWERAMAACGAHDPK-KPRHFMEVSRRLFGRAGLTKN 240

Query: 235 EVFLLRGIVSTL 246
           E+ LLRG+ + +
Sbjct: 241 ELDLLRGVCAAV 252


>gi|317970456|ref|ZP_07971846.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CB0205]
          Length = 239

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 8/239 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   NF++ +LRLV PR      +AR  + + + +++  ++F 
Sbjct: 4   AVVLVEPAGPLNVGSVARLCANFSVDELRLVAPRCDHLGNEARLMAVHGEALLEQAQLFP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNVGIIFGRERWGLT 133
            L+ A+AD   + AT+ R       +  P EA   L  +E         ++FGRE  GL+
Sbjct: 64  TLEAALADCRRVVATSGRIEEEALPLNGPAEALSWLQASETDAPSAPAALVFGREDRGLS 123

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N E+  +  I+    +  + S+N+S AV + + E               Q  P  + +L 
Sbjct: 124 NAELLQAGRILRLETSEAYASMNLSHAVAVCLHELRRC-----PAPTAPQPEPCQREQLE 178

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           + L   E  L E G+  P   + + +  L ++  R E+  EEV LLRG+V  L   S++
Sbjct: 179 AALSDAEELLLEVGFLYPHTAQAR-MAKLRALLQRAEIRDEEVALLRGMVRQLRWASQR 236


>gi|33240594|ref|NP_875536.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238122|gb|AAQ00189.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 246

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 2/237 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P    N+G +AR   NF + +LRLV+PR    + + +  + +    + +  ++SN
Sbjct: 12  IILVEPLGEINLGSIARLCENFGVDELRLVSPRCDPMNIETQKMAVHGKRFLKNACIYSN 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D   + AT  R  +    +   K A   L E       + IIFGRE  GL+N E
Sbjct: 72  LLDAVNDCVRVVATCGRIDHGDIPLHTSKNALQWLLE-TNPKDPIAIIFGREDRGLSNSE 130

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + ++  II+   +  +PSLN+S AV +++ E    +  S+ K        A+  EL   L
Sbjct: 131 LQIAQKIITLKTSEKYPSLNLSHAVAIVLHEFKYYNETSNHKKNFITYKTASAKELNDCL 190

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           D ++  L E G+        + +  +  +  R E   ++V L+RGI+  +  FS++ 
Sbjct: 191 DDVKKLLLEIGFLYDHTANAR-MSKIKGLLQRAEARSKDVSLIRGILRQIRWFSKKK 246


>gi|113954680|ref|YP_730178.1| RNA methyltransferase [Synechococcus sp. CC9311]
 gi|113882031|gb|ABI46989.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           CC9311]
          Length = 243

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 2/238 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   N+N+  LRLV PR      +A   + + D V+    +F 
Sbjct: 4   AVVLVEPAGPLNVGSVARLCANYNIQDLRLVAPRCDPDDPEAVRMAVHGDAVLQHAAIFP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L EA+AD   + A+  R  +    + +P+E A  +      G    ++FGRE  GL+N+
Sbjct: 64  SLIEAVADCQQVVASCGRIDHGEIPLQSPEEIAPWIQSGRSQGLRSALVFGREDRGLSND 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPATKGELLS 194
           E+ +S+ +       ++PSLN+S AV +++ E   E  + +          PA+  EL  
Sbjct: 124 ELLISHRVFKLHTGDVYPSLNLSHAVAVVLHELERERRLRAKPVAPVISEIPASAPELDG 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            L   E  L E G+        + +  +  +  R  +  +EV LLRG+V  L   +R+
Sbjct: 184 CLRDAEDLLLEVGFLLEHTASAR-MAKVKGLVQRALIRSDEVALLRGMVRQLRWAARR 240


>gi|148241831|ref|YP_001226988.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850141|emb|CAK27635.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
          Length = 248

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 1/242 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   NF +  LRLV PR      +A+  +      + +  ++ 
Sbjct: 6   AVVLVEPSGPLNVGSVARLCANFGVASLRLVAPRCDPTDPQAKQMAVRGLEQLLACELYP 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L++A+AD   + A + R     +  L P+ A   L E      +V ++FGRE  GL + 
Sbjct: 66  SLEDAVADCRRVVACSGRVEAKEREHLLPQPALQWLLEPKPGPNHVALVFGREDHGLHSS 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L+  ++  P +  + SLN+S AV + + E    + V  +              L + 
Sbjct: 126 ELNLAGKLLRIPTSEAYGSLNLSHAVAICLAEHQRLAHVPMDSASDSSPPLPAHAALEAA 185

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
           +   E  L E G+  P     + +  L  + +R E    EV LLRG+V  L   SR  + 
Sbjct: 186 MQDAEELLLEVGFLYPHTAAAR-MAKLRQLMLRSEPSEAEVALLRGMVRQLRWASRHGAT 244

Query: 256 RN 257
             
Sbjct: 245 GE 246


>gi|254432233|ref|ZP_05045936.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
           7001]
 gi|197626686|gb|EDY39245.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
           7001]
          Length = 255

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 4/244 (1%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V++LV+P    N+G VAR   NF + QLRLV+PR     E+AR  + +   V+D   
Sbjct: 3   PPLVVVLVEPAGALNVGSVARLCANFAVQQLRLVSPRCDPFGEEARRMAVHGASVLDQAA 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +L  A+AD H + AT+ R       +  P+ +   L+      Q V ++FGRE  GL
Sbjct: 63  LHPDLASAVADCHRVVATSGRRDGEPLPLQGPETSLAWLSGGPCD-QTVALVFGREDRGL 121

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKG 190
           +N E+  +  +++ P    + SLN+S AV L +            + +  +E   P  +G
Sbjct: 122 SNGELLQAGHLLTLPTAAAYTSLNLSHAVALALHAWHGQVQRTAHAAEPPEEVLEPCRRG 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           EL + +   E  L E G+  P     + +  + ++  R  +   EV LLRG+V  L   S
Sbjct: 182 ELEALVADAEALLLEVGFLYPHTADAR-MAKVRALLQRGGISSGEVALLRGMVRQLRWAS 240

Query: 251 RQSS 254
           RQ +
Sbjct: 241 RQGA 244


>gi|294495306|ref|YP_003541799.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
           mahii DSM 5219]
 gi|292666305|gb|ADE36154.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
           mahii DSM 5219]
          Length = 231

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 14/241 (5%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
               I+LV+P    N+G V R+M NF    L LVNP       +AR+ S +A  +++S  
Sbjct: 3   PQIRIVLVEPLYQGNVGSVTRSMENFGFDDLVLVNPCK--LEGQARAMSCHARDLLESTP 60

Query: 73  VFSNLKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERW 130
               L+EAI D   +  T+        + +  P      + ++       +  +FGRE  
Sbjct: 61  KVDTLEEAIEDTDIVIGTSGIAGIKTDQHIRMPAYTPAEIRDKFRETNGKIAFLFGREDN 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           G T EE+   + I++ P +  +P +NIS A  + ++E     I         +   A   
Sbjct: 121 GFTREELKRCDMIMTIPTSEKYPVMNISHAATIAMYEMSNLPIG--------ERPIAEGF 172

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           +L    D+ E  L +     P  K +K    L  IF R EL   EV  LRG++  + +  
Sbjct: 173 DLQLLYDHFEQVLADVK--HPTHKMEKTALMLKRIFGRAELTPREVQTLRGVLRDIQRSK 230

Query: 251 R 251
           +
Sbjct: 231 K 231


>gi|46581141|ref|YP_011949.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601619|ref|YP_966019.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|46450562|gb|AAS97209.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561848|gb|ABM27592.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|311234817|gb|ADP87671.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
          Length = 254

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 4/248 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDS 70
             G  +++V  +  EN+GMVARA  N     + LV+P + W  +KAR  + A  + +++ 
Sbjct: 2   LPGLTVVMVKTRFPENVGMVARACVNMGAQDIVLVDP-ERWEIDKARPLATAKGEPLLER 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+V   L EA+AD   ++ TTAR     + +L P++A   +   +  G+ V ++ G E  
Sbjct: 61  VKVVGTLSEAVADCTAVWGTTARTGGWRREILTPEKAGPEMAASLADGERVALLLGPEDR 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS-EKNVKEQNTPATK 189
           GL N+EI     +++ P  P   SLN++QA L++++EC + S+          ++   T+
Sbjct: 121 GLNNDEIEHCTRLLTIPTAPEASSLNVAQASLIVLYECHKASLAHPFRPGPGPESRRITQ 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E    L  L   L +  + R  +     +  +     +  L R E  +L G+   + + 
Sbjct: 181 DENELLLATLRDMLLDIDFLR-HDNPDYFMMPVRRFMGKAGLRRHEFDMLMGVCRQVRRV 239

Query: 250 SRQSSRRN 257
           +  +  RN
Sbjct: 240 ATLARDRN 247


>gi|194477215|ref|YP_002049394.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
 gi|171192222|gb|ACB43184.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
          Length = 255

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 12/252 (4%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V++LV P    N+G VAR   NF + +LRLV P        A+  + +   +++   
Sbjct: 5   SPLVLVLVQPAGPINVGSVARLCANFGIDELRLVAPCCNPIDMAAKQMAVHGTSILNRAL 64

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++ NL  A+AD   + A + R      +   P+EA   L      G    ++FGRE  GL
Sbjct: 65  IYPNLVSALADCRRVVACSGRINKEVLTTNVPEEALSWLLTTEVDG-PSALVFGREDRGL 123

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-------- 184
           +N E+ L+  ++    +P + S+N+S AV ++++E  +    S+  ++ + +        
Sbjct: 124 SNNELLLAGKVLKLITSPQYTSINLSHAVAIILYELEKIRNSSNHTSIAKGDLCLQSTMI 183

Query: 185 --TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
              PAT+  L  FL   E+ L + G+  P   + +M   L ++  R ++   EV LLRG+
Sbjct: 184 LEDPATRLALEGFLSDTELLLLKVGFLYPNTARARMK-KLKTLLQRSQITGGEVSLLRGM 242

Query: 243 VSTLDKFSRQSS 254
           V  L   +R+ S
Sbjct: 243 VRQLHWANRRHS 254


>gi|325282500|ref|YP_004255041.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           proteolyticus MRP]
 gi|324314309|gb|ADY25424.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           proteolyticus MRP]
          Length = 266

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 10/257 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A    ++LV P+   NIG  ARAM N   + LRLV PR    S++AR+ + +A+ +++  
Sbjct: 14  ASSLAVVLVSPKTPGNIGSAARAMLNMGASDLRLVAPRCDHLSKEARAFAVHAEELLERA 73

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V++ L EA+AD      T+AR R +      P      L  R+ +  +  ++FG E  G
Sbjct: 74  PVYATLAEALADRDLSIGTSARERADMPRPQHP----AALRGRVRAATSPALVFGPEETG 129

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L N ++    A +  P    + SLN++QAVLL+ +E ++      E+    +   AT+GE
Sbjct: 130 LLNADLEQCQATVRIPTA-DYASLNLAQAVLLVTYEFLQG----GEEPAGGERKTATRGE 184

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +     +L   +   GY     + +  L     +  R ++   E  L RG++  +    +
Sbjct: 185 MEEMYGHLVDVMHLTGYTD-AMRARHTLRLWRLMLDRAQMSSAESRLFRGLLRQVQWKVK 243

Query: 252 QSSRRNNVLLQKTEKSE 268
           ++  + +    + +  E
Sbjct: 244 EAGVQASAPESQKQDPE 260


>gi|282163400|ref|YP_003355785.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
 gi|282155714|dbj|BAI60802.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
          Length = 235

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 14/245 (5%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L++P    N+G V R+M NF    + LV P        A++ +++A  ++ + R+
Sbjct: 3   SIRVVLIEPLYEGNVGSVCRSMKNFGFADIVLVKPC--RLDNFAKAMASHAQDLLATARI 60

Query: 74  FSNLKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
                EA+     + ATT +   +    V  P      L   +        +IFGRE  G
Sbjct: 61  VDTFDEALEGADLLVATTGKPGAHINSHVRYPFYNPKELRTMLEDKSGTAALIFGREDAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NE +   + +   P +  +P +N++QAV + ++E                   A + +
Sbjct: 121 LPNEIVERCDIVAYIPTSKDYPIMNLAQAVSIFLYEL--------SGFKGGNVALADRED 172

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +    +     L++  Y  P  KK K +  L  I+ R  L R E + + G++  +     
Sbjct: 173 VDRLYENYSNLLDDINY--PEHKKDKTMMMLRRIYGRAMLNRREYYTMMGVLHEIGLALE 230

Query: 252 QSSRR 256
           ++ +R
Sbjct: 231 RAKKR 235


>gi|226356726|ref|YP_002786466.1| tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
 gi|226318716|gb|ACO46712.1| putative tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
          Length = 252

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 10/248 (4%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++LV P+   N+G  ARAM N   + LR+V PR  +   +A + + +A  ++ S RV
Sbjct: 2   NLAVVLVSPKTPGNVGAAARAMLNMGASDLRIVAPRCDYLDSQALAMAVHAGDLLRSARV 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F  L+EA+ D      T+AR R +  +   P     ++ +         ++FG E  GL 
Sbjct: 62  FPTLREALGDRDLSVGTSARLRADLPAPRHPALIRPMVRQAAAP----ALVFGPEETGLI 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N ++      +  P    + SLN+SQAVLL+ +E ++      ++ +      AT+ E+ 
Sbjct: 118 NSDLEQCQVTVRIPT-GNYASLNLSQAVLLVCYEFLQG----QDEPIPVTRKTATREEME 172

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +   +L  +++  GY     + +  L    ++  R  L   E  L RG +  +      +
Sbjct: 173 AMYSHLHETMQLIGYTD-AVRARHTLRLWRAMLDRGLLSSAESRLFRGFLRQVRWKVEDA 231

Query: 254 SRRNNVLL 261
           + R     
Sbjct: 232 AARGTTSA 239


>gi|300710881|ref|YP_003736695.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
 gi|299124564|gb|ADJ14903.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
          Length = 238

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 6/241 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
             +++VD +   N+G +ARAM NF  + L+LV+P +     +A   +  A   V+    V
Sbjct: 2   ISVVIVDAETPGNVGTIARAMKNFGFSDLKLVDPPELDRDGEAYGFAGQAREDVLPDAEV 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGL 132
                E I   H +  T   N +  K V  P      L   + S + +V ++FGRER GL
Sbjct: 62  V-TFDEVIEGFHTVGFTATTNEDARKHVRFPFRTPTDLAADLASVETDVALVFGRERVGL 120

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            NEE+A  + I + P +  +P LN+ QA  + ++E  + ++  S+     ++  A + E+
Sbjct: 121 MNEELARLDQICAIPASADYPVLNLGQAATVALYELRDLAMNESQLP-DVEHERAAEPEI 179

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F D  + +L+  GY  P  K+ K +  +  +  R      E+  L G++  +++ +R+
Sbjct: 180 ERFYDRFDETLQAVGY--PDRKRPKTMRLVRRLVGRSHPTDREITTLHGVLRAVERATRE 237

Query: 253 S 253
            
Sbjct: 238 R 238


>gi|56750068|ref|YP_170769.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56685027|dbj|BAD78249.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 267

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 11/258 (4%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             PQ ++      I+LV+P    N+G +AR M NF L+   +V PR      +AR  + +
Sbjct: 15  SVPQPRSPMS-LRIVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVH 73

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  +++   +  NL  A+    ++ ATT +       + +P +    L +         +
Sbjct: 74  AAALLEQAVLVDNLPSALEGCQWVAATTGQRDLRDLPLESPTQILPWLRQ-----GPAAL 128

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           IFGRE  GL   E++L+   ++FP +P +PSLN++QAV L  +     S   S    +++
Sbjct: 129 IFGREDSGLQRSELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQE 188

Query: 184 NTPATK----GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
           ++PA       +L  +   LE  L   GY        + ++ + +I  R  L  EEV LL
Sbjct: 189 SSPAAVRAAFEQLHGYTSDLEALLLRVGYLHSHTAASR-MEKIRAIAQRSALTAEEVALL 247

Query: 240 RGIVSTLDKFSRQSSRRN 257
           RG+V  L+    Q    +
Sbjct: 248 RGMVRQLNWALNQVPSSD 265


>gi|297623111|ref|YP_003704545.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297164291|gb|ADI14002.1| RNA methyltransferase, TrmH family, group 1 [Truepera radiovictrix
           DSM 17093]
          Length = 248

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 11/243 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+LV P+   N+G  ARAM NF L  L LV P+      +A + +++A  V+       
Sbjct: 15  RIVLVRPKDPANVGAAARAMKNFGLGDLHLVAPQRPI-GRRAYALASHAQDVLQRAVEHE 73

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++ EA+     +  TTAR R   + +  P+EAA  L     + + + ++FG E +GL+N+
Sbjct: 74  SVAEALKGCTLVLGTTARERREGR-MYTPREAAQTL-----TPEGLAVLFGPEDFGLSND 127

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++      I  P    + SLN++QAV L+ +E    S      +  E+   A +  L   
Sbjct: 128 DLKHCQGYIRIPTA-AYASLNLAQAVQLVAYEWFVTSQEQPPPSPPEER--AARELLEGM 184

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
            D+L  +L   GY    +++        +IF R +L   EV  LRG+   +     + S 
Sbjct: 185 YDHLLKTLHLIGYTD-AQRQGSAERLFRAIFDRADLSAREVAALRGLWRQVAWAVTRGSA 243

Query: 256 RNN 258
           R  
Sbjct: 244 REQ 246


>gi|318040301|ref|ZP_07972257.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 241

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 2/238 (0%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P    N+G VAR   NF + QLRLV PR      +AR  + + + +++  +++ 
Sbjct: 4   AVVLVEPAGPLNVGSVARLCANFAIDQLRLVAPRCDHLGAEARQMAVHGEALLEQAQLYP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L  AIAD   + AT+ R       +  P  A   L +         ++FGRE  GL+N 
Sbjct: 64  DLAAAIADCQRVVATSGRIETESLPLSEPAPALRWLWQGSRGDAGAALVFGREDRGLSNA 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+  +  ++    +  + SLN+S AV + + E          +   +      +G L + 
Sbjct: 124 ELLQAGRLVRLATSEAYASLNLSHAVAICLHELQACRTTERTEPA-DLGNLCERGALEAT 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           L   E  L E G+  P     + +  L ++  R ++   EV LLRG+V  L   +RQ 
Sbjct: 183 LADAEALLLEVGFLYPHTAAAR-MAKLRALLQRAQVQEPEVALLRGMVRQLRWAARQG 239


>gi|268324809|emb|CBH38397.1| putative tRNA/rRNA methyltransferase [uncultured archaeon]
          Length = 234

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 14/236 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV+P+  EN+G VAR   NF  + L +VNP +     KA S +A+A  V+ S ++ 
Sbjct: 3   VRIILVEPKSEENVGAVARVTKNFGFSDLYIVNPPEI--GIKALSVAAHAYDVLQSCKIV 60

Query: 75  SNLKEAIADLHFIYATTARNRNNF-KSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132
            +L  AIA+   +  TTA+   +  K +  P    + L +++   + +  I+FGRE  GL
Sbjct: 61  DSLPVAIANSAIVAGTTAKLGASTNKHLRMPFFLPLELKDKVAGKRGILSILFGREDVGL 120

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            N+E+ L + ++S P +P +P +N+S AV ++++E            +      A   + 
Sbjct: 121 LNDELKLCDLVVSIPTSPEYPVMNLSHAVAVILYEL--------SDTISGTLELAPVEDR 172

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                 L+  L+E GY     KK K L  L  I  R EL  +E+  L+GI+   + 
Sbjct: 173 ERLYMQLKTFLDEIGY--REHKKAKTLLMLRRILGRAELTTKELQTLQGIIGKAEW 226


>gi|317484738|ref|ZP_07943638.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316923990|gb|EFV45176.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 257

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 8/253 (3%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV 67
           Q++ +   II+V  +  ENIGM ARA  N    +L LV+P   W  EKAR  + A  + +
Sbjct: 7   QDALRHLEIIMVGTKFPENIGMAARACANTGCGRLTLVSP-AWWDKEKARPLATAKGEPL 65

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D++ V   L +A+A     + TTAR     + +L P++AA  +   +  G  V I+FG 
Sbjct: 66  LDAIEVKPTLGDALAPNVLTFGTTARTGGWRRGLLTPEQAAGEIAPLLHEGSRVAIVFGC 125

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN-----VKE 182
           E  GL+N +I     +++ P      SLN++QA+L++ +ECM+       +        +
Sbjct: 126 EDRGLSNADIEQCQRLVTIPTAGEASSLNLAQAILILTYECMKAVSRVDPQPSLGNDPGQ 185

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
           Q+   T  E       L+ +L    Y +  +     L  L     +  L R E+ +L GI
Sbjct: 186 QSRRITHEEQALLYARLKETLLAIDYLKS-DNPDYFLMPLRRFLGKSGLRRHEMDMLMGI 244

Query: 243 VSTLDKFSRQSSR 255
              +D   +++ +
Sbjct: 245 CRQVDNLRKEAGK 257


>gi|81300411|ref|YP_400619.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
           7942]
 gi|81169292|gb|ABB57632.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
           7942]
          Length = 245

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 116/246 (47%), Gaps = 10/246 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+LV+P    N+G +AR M NF L+   +V PR      +AR  + +A  +++   +  
Sbjct: 4   RIVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVLVD 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  A+    ++ ATT +       + +P +    L +         +IFGRE  GL   
Sbjct: 64  NLPSALEGCQWVAATTGQRDLRDLPLESPTQILPWLRQ-----GPAALIFGREDSGLQRS 118

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK----GE 191
           E++L+   ++FP +P +PSLN++QAV L  +     S   S    +++++PA       +
Sbjct: 119 ELSLAQRYLTFPTDPAYPSLNLAQAVGLCCYHYACLSEADSRGVPQQESSPAAVRAAFEQ 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L  +   LE  L   GY        + ++ + +I  R  L  EEV LLRG+V  L+    
Sbjct: 179 LHGYTSDLEALLLRVGYLHSHTAASR-MEKIRAIAQRSALTAEEVALLRGMVRQLNWALN 237

Query: 252 QSSRRN 257
           Q    +
Sbjct: 238 QVPSSD 243


>gi|298529619|ref|ZP_07017022.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511055|gb|EFI34958.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 252

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 2/244 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                +IL  P+  EN+G VARA  N   ++L +   +   P   A  +++    ++ S 
Sbjct: 1   MNNIAVILCRPKYSENVGSVARACINMGCSRLIIAGSQTFDPQRAAPLATSRGAELLRST 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + NL++A+   H ++AT+AR     K V  P +AA  +       Q+  ++FG E  G
Sbjct: 61  EHYPNLEQALKGFHRVFATSARVGGWRKGVFLPWQAAQEIMRPETLDQDTALVFGPEDKG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKG 190
           L N EI L   IIS P      SLN+SQAVLL+++EC ++   +  +++   ++P  T+ 
Sbjct: 121 LANHEIELCPRIISIPTTSQAWSLNLSQAVLLVLYECFKHVPAARTRHIPSWDSPPVTQE 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++      ++ +L    + +P +     +  L     +  + + E  LL GI   +   +
Sbjct: 181 QMQLLHQNIQETLLLIDFLQP-DNPDYFMLPLKRFLAKTGIRQHEFNLLMGICRQIKWMA 239

Query: 251 RQSS 254
            +  
Sbjct: 240 GRLP 243


>gi|284165121|ref|YP_003403400.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
           turkmenica DSM 5511]
 gi|284014776|gb|ADB60727.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
           turkmenica DSM 5511]
          Length = 255

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A +  +    P + +VD Q   N+G +ARAM NF    L LV+P +  P  +A   + 
Sbjct: 5   PSATEPPSDRTPPAVAVVDAQFPGNVGTIARAMKNFGFEDLLLVDPPELDPDGEAYGFAG 64

Query: 63  NAD-CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-N 120
           +A   V+ +     +    + + H I  T   N ++   V  P      L ER+ + +  
Sbjct: 65  HAREDVLPNATEI-SFDRLVTEYHTIGCTAVTNEDDRSHVRFPFSTPADLAERLPTVEAP 123

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             ++FGRER GLTNEE+A  + I S P +  +P LN+ QA  + ++E    ++   E  +
Sbjct: 124 TALVFGRERVGLTNEELARIDEICSIPASDEYPVLNLGQAATITLYELRSLTLADDETQL 183

Query: 181 KE-QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
            + +   A +  +    D     L E     P EK+ K +  L  +F R +L   E   L
Sbjct: 184 PDVERVRAPEPTVDRLYDQWADLLAEIN--HPEEKRDKTMRMLRRVFGRADLTEREANTL 241

Query: 240 RGIVST 245
            GI+  
Sbjct: 242 LGILRR 247


>gi|283853704|ref|ZP_06370934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
 gi|283570914|gb|EFC18944.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
          Length = 250

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 2/247 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L  P+  EN+G  ARA  N  +++L LV+P    P      +++    ++D++
Sbjct: 2   LDNLTIVLFRPKFSENVGAAARACANMGVSRLVLVDPPAFDPDRARPMATSKGGLLLDTL 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L  A+A    +Y TTAR     K  + P EAA  +   + +G  V ++FG E  G
Sbjct: 62  EIVPTLAAAVAGAEAVYGTTARLGGWRKGEVTPAEAADGICRTLGAGGGVAVVFGPEDAG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATKG 190
           L+N+E  L   +++ P      SLN++QAVL++ +E  + +   +     +  +  AT  
Sbjct: 122 LSNQETQLCGRLVNIPTAGEATSLNLAQAVLVVCYEVFKAASGLAGDVAGQTPSRAATHA 181

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E  S    L  +L    +    +     +  +     R  L R+E  LL G+   +    
Sbjct: 182 ERESLFAALRETLLAIDFL-KADNPDYWMLPVRRFIDRVGLRRQEFNLLMGVCRQVKWAV 240

Query: 251 RQSSRRN 257
            Q  +++
Sbjct: 241 GQGGKKS 247


>gi|258404596|ref|YP_003197338.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
 gi|257796823|gb|ACV67760.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
          Length = 256

 Score =  234 bits (599), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 2/247 (0%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
            N      ++L  P+  EN+G  ARA  N     L+LV P        A  ++     V+
Sbjct: 5   PNLLDNLTVVLFQPKFAENVGSTARACANLGCPNLKLVQPPAWDLERAAPLATGRGKEVL 64

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            S+ +  +L  A++  H +Y TTAR     K++  P++ A  +  ++ +G  V ++FG E
Sbjct: 65  HSLTLHPDLPSALSPHHTVYGTTARTGGWRKAIRTPEQVAEDVAGKLAAGHQVAVVFGPE 124

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPA 187
             GL+NEEI +   +++ P      SLN+SQAVLL+++E  + S      +    Q+   
Sbjct: 125 DRGLSNEEIDICGQLLTIPTASEATSLNLSQAVLLVLYEWFKASSGKRFLRTTPPQSRLC 184

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           T  E  + L  ++ +L    +F+       ML  +   F R EL R E  LL GI   + 
Sbjct: 185 THEERETLLTSVQEALLRLDFFKDDNAAYWMLP-VRRFFQRFELRRHEFNLLMGICRQVK 243

Query: 248 KFSRQSS 254
             + ++ 
Sbjct: 244 WLATRTD 250


>gi|242399001|ref|YP_002994425.1| SpoU protein [Thermococcus sibiricus MM 739]
 gi|242265394|gb|ACS90076.1| SpoU protein [Thermococcus sibiricus MM 739]
          Length = 246

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 117/236 (49%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   N+G +AR M NF +T L LVNP+    ++ AR+ + +A  ++++ ++  +
Sbjct: 5   VILVEPEYPINLGAIARVMKNFGVTDLILVNPKVSPNNKIARTFAVHAVDILENAKIHES 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+  +     T+     ++    AP                +G++FGRE  GL NEE
Sbjct: 65  LEEALNTVDLAIGTSGLAGGDYIPERAPISPEEFAKRLSIYDGEIGLVFGRESRGLDNEE 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  ++ P +  +P +N+S AV ++++E  +  + ++   VK +   +T+ E    +
Sbjct: 125 LKKLDFTVTIPTSEEYPIMNLSHAVAVILYEVFKQKLKNNPTEVKRRLRKSTRQEREMLV 184

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           ++    L+   Y + +EK++  +        R  +  +EV  L G +    K   +
Sbjct: 185 EFWAKFLDTLEYPKDLEKRRFYVLMFKRFLGRGFIYAKEVHSLYGPLRRAIKLLER 240


>gi|320354680|ref|YP_004196019.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
           2032]
 gi|320123182|gb|ADW18728.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
           2032]
          Length = 264

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 6/242 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFS 75
           IILV P+  ENIG  AR   NF + +L +V+  + +  E+    + + A  +I  +RV  
Sbjct: 16  IILVGPKFPENIGASARIASNFGIAELIVVS-EEDFDQERMLKMATHKAAHLIHGMRVCR 74

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              EA A  HFI  TTAR   +      P+E    +   +  G  VG++FG E  GL+NE
Sbjct: 75  TTAEAAAPFHFIVGTTARQGRHRPQDQTPREVMAEIVPLLA-GNRVGLMFGPEDSGLSNE 133

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++ L     + P    F SLN++QAV +  +E    ++ +        +  A   +L   
Sbjct: 134 DLDLCQFASTIPTAG-FSSLNLAQAVAIHCYELY-TAVHTHPFAAIPTSEFANSFDLEGM 191

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
            +++E +L E  +      +   + ++     R  L ++E  ++RGI   L    RQ  +
Sbjct: 192 YEHIEQALNEITFLH-DTNRVYWMRNIRQFLSRLRLKKKEASMIRGICRKLMWHHRQPPQ 250

Query: 256 RN 257
            +
Sbjct: 251 TD 252


>gi|147919481|ref|YP_686779.1| rRNA methyltransferase [uncultured methanogenic archaeon RC-I]
 gi|110622175|emb|CAJ37453.1| rRNA methyltransferase (SpoU family) [uncultured methanogenic
           archaeon RC-I]
          Length = 249

 Score =  233 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 20/251 (7%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++LV+P    N+G V RAM NF    L LV P +      A++ +++A  ++ S  +
Sbjct: 8   HVRVVLVEPAFEGNVGSVCRAMKNFGFDDLVLVRPCE--LGNSAKAMASHAQDLLASAAI 65

Query: 74  FSNLKEAIADLHFIYATTARNRNNFK-----SVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              ++EA+  +  I  TT +  ++ +        +P+E   +L ++      V ++FG+E
Sbjct: 66  VDTVEEALDGVSVIVGTTGKPGSSTREHIRMPCFSPRELKTLLEDK---QGTVALLFGKE 122

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL NE +     ++S P +  +P +N+S AV ++++E  +                A 
Sbjct: 123 NHGLPNEILEKCGVVLSIPTSDDYPVMNLSHAVAVVLYELADIKGNDF--------LLAD 174

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                    ++E  L+   Y     KK K    +  I  R  +   E F L G++  +  
Sbjct: 175 SEMQEILYQHVEQLLDSINYAD--YKKDKTSLMIRRIIGRAMISPREYFTLMGLIRDIQL 232

Query: 249 FSRQSSRRNNV 259
              ++    + 
Sbjct: 233 ALARAEAGQDT 243


>gi|260436456|ref|ZP_05790426.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
 gi|260414330|gb|EEX07626.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
          Length = 248

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 7/244 (2%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV+P    NIG VAR   NF +++LRLV PR    S++A   + +   ++ +  V  
Sbjct: 4   VVVLVEPAGPLNIGSVARLCANFGVSELRLVVPRCDHLSDEAMLMAVHGQALLQAAVVVP 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWG 131
           +L  AI D   I  +  R  +    +  P++A   L         SG  V ++FGRE  G
Sbjct: 64  DLLTAINDCRRIVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPVALVFGREDRG 123

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATK 189
           L+N E+ L   ++       +PSLN+S AV +++ E    + V++E          PA  
Sbjct: 124 LSNSELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSVTTETRCIEPPSPDPAAA 183

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             L + LD     L E G+        + +  +  +  R  +  EEV LLRG+V  L   
Sbjct: 184 KALSACLDDATDLLLEAGFLLDHTASAR-MAKVRDLLQRATVRTEEVALLRGMVRQLRWA 242

Query: 250 SRQS 253
            R  
Sbjct: 243 IRAK 246


>gi|289583255|ref|YP_003481721.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
           43099]
 gi|289532808|gb|ADD07159.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
           43099]
          Length = 263

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 7/250 (2%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-D 65
            L +    P + +VD Q   N+G ++RAM NF  + L L++P +  P  +A   + +A D
Sbjct: 16  DLPSRRTPPAVAVVDAQFPGNVGTISRAMKNFGFSNLLLIDPPELDPDGEAYGFAGHARD 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGII 124
            V+ +     +  E ++D H I  T   N N+   +  P      L ER+ + +    ++
Sbjct: 76  DVLPNATEI-SFDELVSDYHTIGCTAVTNENDRSHMRFPFSTPADLAERLPTVEAPTALV 134

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE-Q 183
           FGRER GLTNEE+A  + I + P +  +P LN+ QA  + ++E    ++   E  + + +
Sbjct: 135 FGRERVGLTNEELAHIDEICAIPASEEYPVLNLGQAATITLYELRSLALDKDETQLPDLE 194

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              A +  +    D     LEE     P EK++K +  L  ++ R +L   E     G++
Sbjct: 195 RVRADEATVDRLYDQWADLLEEIN--HPPEKREKTMRMLRRVYGRADLTEREANTFLGLL 252

Query: 244 -STLDKFSRQ 252
               ++ + Q
Sbjct: 253 RRATERPAEQ 262


>gi|124485957|ref|YP_001030573.1| hypothetical protein Mlab_1137 [Methanocorpusculum labreanum Z]
 gi|124363498|gb|ABN07306.1| RNA methyltransferase, TrmH family, group 1 [Methanocorpusculum
           labreanum Z]
          Length = 248

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 15/250 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+P    NIG  AR M NF    + LVNP        AR  S++A  V+++ 
Sbjct: 1   MPQIDIVLVEPLYEGNIGFAARVMKNFGFHNMVLVNPPKLTMECTAR--SSHAKDVLENA 58

Query: 72  RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129
               +L+E  A      ATT   +++    +  P  +   L E I      + I+FGRE 
Sbjct: 59  ERI-SLEEVFARSDLCIATTGGLSKSVSNPMRMPYYSVAELREMIEGIDGRISILFGREN 117

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           WGL NEEIA  + + + P +  +P +NIS A+ ++ +E             + +   A K
Sbjct: 118 WGLNNEEIAKCDIVCTIPTSDEYPIMNISHAIGIVCYELAHLQ--------RGEYLLANK 169

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E+ +   ++E  LE      P+EK++  +     +  R  L   E   L GI+   +  
Sbjct: 170 TEMNALYAHIERFLEGIQ--HPIEKRETTVLLARRVLGRTRLTVREASTLHGIMRRTEWH 227

Query: 250 SRQSSRRNNV 259
            +   +  + 
Sbjct: 228 LKHPGQAYDA 237


>gi|313680728|ref|YP_004058467.1| RNA methyltransferase, trmh family, group 1 [Oceanithermus
           profundus DSM 14977]
 gi|313153443|gb|ADR37294.1| RNA methyltransferase, TrmH family, group 1 [Oceanithermus
           profundus DSM 14977]
          Length = 240

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 7/245 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   N+G  ARAM NF L +L LVNP         R ++  A  V++  R  
Sbjct: 2   IRVVLVEPREPRNVGAAARAMKNFGLEELVLVNPERPLDEAAYRLATRGAADVLEQARTV 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + L EA+A   ++ AT+AR R  +   V  P+E A  +      G  V ++FGRE +GL+
Sbjct: 62  ATLDEALAGAVYVVATSARAREGYAGEVCTPREGAPRVRAMTAEG-PVALLFGRENFGLS 120

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEE+  ++A+   P    + SLN++QAVLL+ +E     +  +E     +  PA   EL 
Sbjct: 121 NEEMDRAHAVWRIPT-GGYASLNLAQAVLLVAYEVF---LARAELTETARPRPAAAEELE 176

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
            F   LE  L E  Y     + +  +     +  R  L   EV  LRG++          
Sbjct: 177 RFFADLEAYLIEIRYTD-EHRLEGAMRAFRRMAHRALLSSNEVQRLRGLLRQSRWAIAHG 235

Query: 254 SRRNN 258
             R +
Sbjct: 236 GERVD 240


>gi|124026236|ref|YP_001015352.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A]
 gi|123961304|gb|ABM76087.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           NATL1A]
          Length = 245

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 126/237 (53%), Gaps = 2/237 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF++ +LRLV+P+  + +++A+  +     +++  +V+ +
Sbjct: 9   VILVEPAGPINVGSVARLCENFSVHELRLVSPKCEYLAQEAKKMAVRGLKILEKAKVYED 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A++D   I AT  R  +    + + K+A   + +     + + ++FGRE  GL+NEE
Sbjct: 69  LNSALSDCSRIIATCGRKEHGEIPLNSNKDALSWVLKSERE-ETIALVFGREDRGLSNEE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +  +N +IS   +  +PSLN+S AV +++ +  + + +   K   + ++PA   +L   +
Sbjct: 128 LLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKKHTKTSSPANLIKLEDCI 187

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           +     L + G+      K K +  +  + +R E+  +EV L+RGI+S      +  
Sbjct: 188 NDAGSLLLDIGFLMKHTYKAK-MTKIKQLLLRGEIKDDEVALIRGIISQARWKIKNK 243


>gi|213613094|ref|ZP_03370920.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 160

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           LTN+E+   +  ++   NP + SLN++ AV ++ +E     
Sbjct: 120 LTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW 160


>gi|206889201|ref|YP_002249465.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741139|gb|ACI20196.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 252

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 7/244 (2%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L +S K  V  +LV+P+   NIG  ARA+ N   T L L+NP      ++A   +  +
Sbjct: 2   PTLNHSWKENVYFVLVEPKESGNIGASARAIKNMGFTNLTLINP--VPLQDEAYWMAWAS 59

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V++  ++F  L E++ D   I  TT R      +++  K+    + E +     V I+
Sbjct: 60  KDVLEKAQIFRELDESLKDKALIIGTTRRRGAKRGAIIDVKDGVKRVYE-VAQNNKVAIL 118

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GL NEE+     +I+ P + L PSLN++QAVL++ +E M    +      ++  
Sbjct: 119 FGREDKGLFNEEVEKCGYLITIPTSLLQPSLNLAQAVLIVAYELMRCEELKDFHMNRQF- 177

Query: 185 TPATKGELLSFLDYLEISLEERGYF-RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              ++ EL    + L   L++  Y     + +K+++++    F R  L   E+ LL G+ 
Sbjct: 178 -YVSQTELDKLYERLFKLLKKIDYIPDNPDIEKRIINNFRHFFGRTGLTFWELKLLHGLC 236

Query: 244 STLD 247
           + ++
Sbjct: 237 THIE 240


>gi|72382535|ref|YP_291890.1| RNA methyltransferase [Prochlorococcus marinus str. NATL2A]
 gi|72002385|gb|AAZ58187.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           NATL2A]
          Length = 245

 Score =  231 bits (590), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 126/238 (52%), Gaps = 2/238 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF++ +LRLV+P+  + +++A+  +     +++  +V+ +
Sbjct: 9   VILVEPAGPINVGSVARLCENFSVHELRLVSPKCDYLAQEAKKMAVRGLKILEKAKVYED 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A++D   I AT  R  +    + + K+ A+    +      + ++FGRE  GL+NEE
Sbjct: 69  LNSALSDCSRIIATCGRKEHGEIPLNSNKD-ALSWGLKSEREDTIALVFGREDRGLSNEE 127

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +  +N +IS   +  +PSLN+S AV +++ +  + + +   K   + ++PA   +L   +
Sbjct: 128 LLKANKVISLNTSEDYPSLNLSHAVAIVLHQFNQLNDLDLLKRHTKISSPANLIKLEDCI 187

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           +     L + G+      K K +  +  + +R E+  +EV L+RGI+S      +  S
Sbjct: 188 NDAGSLLLDIGFLMKHTYKAK-MTKIKQLLLRGEIKDDEVALIRGIISQARWKIKNKS 244


>gi|123968694|ref|YP_001009552.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601]
 gi|123198804|gb|ABM70445.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           AS9601]
          Length = 250

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 2/239 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S +A+  +     ++++ ++F +
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKILENCKIFDD 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D   + A+  R   N  S     E             N+ IIFGRE  GLTN E
Sbjct: 72  LQKAIFDCDLVLASCGRIDVNKDSFFVSSEDIFDWTLSFNKLNNLAIIFGREDRGLTNSE 131

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L+N   S P +   PSLN+S AV ++++E  ++S  +    +K  N  ++K    +FL
Sbjct: 132 LLLANKTFSIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSKEVHDTFL 191

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
           D +E  L   GY      K K+     +  +R      E+ +LRGIV  ++ F   S +
Sbjct: 192 D-IEEMLLRVGYLLKHTSKAKI-SKFKNFILRANTSMHEINVLRGIVHQINWFLNNSKK 248


>gi|328952869|ref|YP_004370203.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453193|gb|AEB09022.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 276

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 7/243 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   +IL  P+  ENIG  ARA  N  L++L +V P         + ++ +A  +I ++
Sbjct: 21  LENLAVILHKPRSPENIGASARAACNMGLSRLIVVQPEVLDQERMLKMATGSAAELIHNL 80

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            V+ +L  A+   HFI  TTAR   N + S + P++ A  L   +     + ++FG E W
Sbjct: 81  VVYHDLGTALGPFHFIVGTTARIGGNVRQSPVTPRDIAQQLIP-LSYHNRIALLFGPENW 139

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLTNEE+A  +A+++ P    F SLN++QAVLL+ +E         ++        A   
Sbjct: 140 GLTNEELAFCHALVTIPTA-AFRSLNLAQAVLLVAYEIFLARQDQRDRFTP---RLANSW 195

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           EL +    L+ +L +  Y    +  +  +  L   F R  L   EV ++RGI   +D + 
Sbjct: 196 ELEAMYADLQDTLIKINYIG-HQNPQHWMMRLRRFFSRHGLRAVEVQVIRGICRQIDWYV 254

Query: 251 RQS 253
           R+ 
Sbjct: 255 RRR 257


>gi|220904214|ref|YP_002479526.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868513|gb|ACL48848.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 250

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 123/248 (49%), Gaps = 10/248 (4%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADC 66
           + +   G  I+LV  +  ENIGM ARA  N   + L LV+P + W  EKAR  +      
Sbjct: 1   MASLLDGLDIVLVKTRFPENIGMAARACVNMGCSSLSLVDP-ERWDKEKARPLATPKGQD 59

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++D V+V+++L EA+A +  +  TTAR     +S+L+P  AA  + E +  G+ V ++FG
Sbjct: 60  LLDDVKVYADLPEAVAPVTLVVGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK--EQN 184
            E  GL NEEI   + +++ P +P   SLN++QAVLL+++EC +       K+    E+ 
Sbjct: 120 PEDRGLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYECADALRNRPGKDAGNAEKK 179

Query: 185 TP-----ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
            P      T  E    ++ L+  L    Y         ++     +F R  L R E   L
Sbjct: 180 HPGGGRQVTAAEQERLMESLKDMLLRLDYLHGDNPDYFIMPW-RRLFSRAGLRRHEYDAL 238

Query: 240 RGIVSTLD 247
            G+   + 
Sbjct: 239 MGLCRQVR 246


>gi|78779450|ref|YP_397562.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712949|gb|ABB50126.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 249

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 2/239 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S KA+  +      +D  ++F N
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCKIFDN 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ AI D   + A+  R   +  SV    E  +          N+ IIFGRE  GL+N E
Sbjct: 72  LENAIFDCDLVIASCGRIDVSKDSVFESSEDIVSWILSFEKINNLAIIFGREDRGLSNNE 131

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L+N   + P +   PSLN+S AV ++++E  ++S  +  K ++  N  A+  ++    
Sbjct: 132 LLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNKSSKRNFNKELEVFN-LASSKQIHDSF 190

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
             +E  L   GY      K K+     +   R      E+ +LRGIV  ++ F   S R
Sbjct: 191 VEIEEMLLGVGYLLEHTSKAKI-SKFKNYLSRANTTMHEINVLRGIVHQINWFLNNSKR 248


>gi|88812653|ref|ZP_01127900.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrococcus mobilis Nb-231]
 gi|88790069|gb|EAR21189.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrococcus mobilis Nb-231]
          Length = 243

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 7/242 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     I+L+      NIG  ARAM    L++L LV P   +P  +A++++ +A  V+ +
Sbjct: 2   NPDNIRIVLLGTTHPGNIGSAARAMKTMGLSRLHLVAPL-YYPDPRAQATAGHAADVLGA 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V ++L  A+ D   +   TAR R      L  +  A+ + E       V ++FGRE  
Sbjct: 61  AHVHADLAAALHDTRLVLGLTARPRRLAAEALDARCGALQIAE-ASRAYPVALLFGREDS 119

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS----IVSSEKNVKEQNTP 186
           GLTN +++  + ++  P NP +P LN++ AV ++ +E             E +      P
Sbjct: 120 GLTNAQLSYCHGVVHIPANPAYPVLNLAAAVQIVCYELFLAGRCLEGERGEPSGSSAAPP 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A   EL  F  +L+  ++  GY R       ++  L  +F R    R E+ LLRGI++ +
Sbjct: 180 APMEELEGFYCHLQRIMQASGYSR-HRPDALLMRRLRRLFNRARPERAELNLLRGILTAI 238

Query: 247 DK 248
           ++
Sbjct: 239 ER 240


>gi|269214401|ref|ZP_05986486.2| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
           ATCC 23970]
 gi|269209997|gb|EEZ76452.1| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
           ATCC 23970]
          Length = 238

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 113/238 (47%), Gaps = 21/238 (8%)

Query: 35  MWNFNLTQLRLVNP-------------------RDGWPSEKARSSSANADCVIDSVRVFS 75
           M    L +L +V P                   +     E++   ++ A  V+ +  + +
Sbjct: 1   MKTMGLHRLTIVAPNLMATPMTENPPVFDPEYPQSFKLPEESFILASGAADVLHNAEIVA 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+AD     A T+R R     +  P++    L +    G+ V ++FG E +GL+ E
Sbjct: 61  TLDEALADTAIACALTSRRREITAPLQTPRDLVPELLQAAQRGEQVALVFGNETFGLSIE 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+   N +++   NP + SLN++QAV ++ +E    +  S   ++++++  AT  ++   
Sbjct: 121 EVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTG-SPMTHLQQEDHAATHEQIKGM 179

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
           + ++E  +++ G+F      ++++  + S+F R     E++ +LRG  +TL +  +  
Sbjct: 180 VAHMESVMDDIGFFN-RRNGERLMRRMQSLFGRANTQTEDIDILRGFFNTLQQRLKDG 236


>gi|87302133|ref|ZP_01084958.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
 gi|87283058|gb|EAQ75014.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
          Length = 262

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 12/252 (4%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G  ++LV+P    N+G VAR   NF L  LRLV PR     E+AR  + +   +++  +
Sbjct: 10  PGLALVLVEPAGPLNVGSVARLCANFALQDLRLVAPRCDHLGEEARRMAVHGGALLERAQ 69

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV------GIIFG 126
           ++ +L  AIAD   + A + R  +    +  P EA   L E               ++FG
Sbjct: 70  LYPDLAAAIADRTRVVAASGRVDSQAVPIEGPAEAIPWLLEHQAGPGPSERPSAPALVFG 129

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE---- 182
           RE  GL+ +E+  +  I+    +  + SLN+S AV + + E        +E+        
Sbjct: 130 REDRGLSTDELLQAGRILRISTDDGYTSLNLSHAVAITLHELRRCQQGGTERRPSGPAPV 189

Query: 183 -QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            +  PA++  L + L   E  L E G+  P     + +  L ++  R ++  EEV L+RG
Sbjct: 190 IRPEPASRELLEAALADAEELLLEVGFLLPHTAHAR-MAKLRALLQRAQISAEEVALVRG 248

Query: 242 IVSTLDKFSRQS 253
           +V  L   S++ 
Sbjct: 249 MVRQLRWASQRG 260


>gi|239908205|ref|YP_002954946.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
 gi|239798071|dbj|BAH77060.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
          Length = 250

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 7/251 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDS 70
                I+L  P+  EN+G  ARA  N  + +L LV+P   +  E+AR  + +    V+D 
Sbjct: 2   LNNLTIVLFRPKFSENVGAAARACANMGVGRLVLVDPP-AFDMERARPMATSKGGLVLDR 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +   L EA+A    +Y TTAR     KSVL P +AA    + +  G  V ++FG E  
Sbjct: 61  LEICGTLAEAVAGAETVYGTTARLGGWRKSVLTPGQAAGGAVKTLQGGGGVAVVFGPEDA 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATK 189
           GL+N+E  L + +++ P      SLN++QAVL++ +E  + S  +  E +    +  AT 
Sbjct: 121 GLSNQETQLCSRLVNIPTADEATSLNLAQAVLVVCYEIFKASKGLEEEVDQPSPSRAATH 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E  S    L  SL    +    +     +  +     R  L R E  LL G+   +   
Sbjct: 181 AERESLFAALRESLLAIDFL-KADNPDYWMLPVRRFIDRVGLKRHEFNLLMGVCRQIKWA 239

Query: 250 ---SRQSSRRN 257
               R   R +
Sbjct: 240 LGTGRDKPRAD 250


>gi|154150404|ref|YP_001404022.1| RNA methyltransferase [Candidatus Methanoregula boonei 6A8]
 gi|153998956|gb|ABS55379.1| RNA methyltransferase, TrmH family, group 1 [Methanoregula boonei
           6A8]
          Length = 261

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV P    N+G  AR M NF  T+L LV+P      E+A+  +++A  V+ + 
Sbjct: 1   MPEIDIVLVAPLYEGNVGFAARVMKNFGFTRLVLVDPC--PLGEEAKGRASHAQDVLGNA 58

Query: 72  RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRER 129
            +   +++  A    + ATT + +++    +  P  +   L ERI  +   V I+FGRE 
Sbjct: 59  EIC-TIEDVFARSSIVVATTGQVSKSVCNPMRMPFYSPRELRERIGIAEGRVSILFGREN 117

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           WGL N+E+  S+ I + P +  +P +N+S AV ++ +E                   AT 
Sbjct: 118 WGLNNDEVKRSDMICTIPTSDEYPIMNLSHAVGIVCYELANLPSAP--------YRLATP 169

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E+     +++  L+      P  K++  +  +  I  R  L   E   + G++   +  
Sbjct: 170 YEMGHLYRHIDRFLDSV--HHPAFKRENTMIMIRRILGRACLTSREASTVHGLLRRTEWH 227


>gi|116754672|ref|YP_843790.1| RNA methyltransferase [Methanosaeta thermophila PT]
 gi|116666123|gb|ABK15150.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta
           thermophila PT]
          Length = 243

 Score =  229 bits (584), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 17/239 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P+   N+G VAR+M NF    L LV P D      A   +A+A  ++ S +   
Sbjct: 4   RVVLVEPRYEGNVGAVARSMKNFGFNDLVLVRPCDIGSFGMA--MAAHAKDILQSAKSVD 61

Query: 76  NLKEAIADLHFIYATTAR--NRNNFK---SVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129
            L++A+  ++ I  TT +  +R++      +  P      L ER+      V ++ GRE 
Sbjct: 62  RLEDALEGVNLIVGTTGKRLSRDHHHLRLHLRVPFLTPSELAERLRDKDGTVALLLGRED 121

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           WGLTN+E+   + ++S P +  +P +N+S A  ++++E         + +   +   A +
Sbjct: 122 WGLTNDELMACDVLVSIPTSDEYPVMNLSHAATVLLYEL-------GQVDSTLEIRLAGR 174

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             L    +  +  L    Y  P  K + ++  L  IF R EL   E   L G++     
Sbjct: 175 DMLERIYESTDHLLRIINY--PEHKIRYVVLMLRRIFGRAELTEREANTLLGVIKKAIW 231


>gi|88602300|ref|YP_502478.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
           JF-1]
 gi|88187762|gb|ABD40759.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
           JF-1]
          Length = 251

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 16/260 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+P    N+G  AR M NF  T L L+NP       +A+  +++AD V++  
Sbjct: 1   MPHIRIVLVEPLYEGNVGFAARVMKNFGFTDLILINPCTI--GNEAKIRASHADDVLEHA 58

Query: 72  RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129
            V   L E     H + ATT   + +       P  +   + + I      + I+FGRE 
Sbjct: 59  TVM-TLDEVFRTSHRVIATTGSLSYSACHPTRMPFYSPKEIRDLIRDLDGTISILFGREN 117

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           WGL+NEE+  ++ I + P +PL+P +N+S AV ++ +E             K     AT 
Sbjct: 118 WGLSNEEVRRADIICTIPTSPLYPIINLSHAVGVICYELANL--------PKGVIPLATV 169

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK- 248
            E+    ++++  L+      P  K++  +  +  +  R  L   E   + G++   +  
Sbjct: 170 DEMNHLYEHIDQYLDLVD--HPGFKRESTMTLIRRVLGRCNLTWRECSTIHGLLRRSEWH 227

Query: 249 FSRQSSRRNNVLLQKTEKSE 268
           F+      ++    +T+   
Sbjct: 228 FAPPQGEESSSHPDRTDPDH 247


>gi|145628738|ref|ZP_01784538.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|144979208|gb|EDJ88894.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
          Length = 184

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 103/189 (54%), Gaps = 10/189 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSV--DEQSYALSAGAENIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  +  EA+ D   +  T+AR R+   +++ P+E A  +   +     + I+FGRER G
Sbjct: 60  RVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKV---VAYKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175

Query: 188 TKGELLSFL 196
           T  +L  F 
Sbjct: 176 TTDQLAYFF 184


>gi|289677967|ref|ZP_06498857.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 155

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 88/155 (56%), Gaps = 1/155 (0%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++LV      NIG  ARAM N  L++L LV+PR  +PS  A + ++ A  +++  
Sbjct: 2   LQNIRVVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPR-IFPSPDADARASGATDILEGA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V + L+EA+     +  T+AR+R+    +L P+ +   + E+   G  V ++FGRE  G
Sbjct: 61  QVVATLEEALVGCRLVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           LTNEE+   +  +  P +P F SLN++ AV ++ +
Sbjct: 121 LTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSY 155


>gi|157413526|ref|YP_001484392.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215]
 gi|157388101|gb|ABV50806.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 250

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 2/239 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S +A+  +      + + +VF +
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKFLKNCKVFDD 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D   + A+  R      S+    E             N+ IIFGRE  GLTN E
Sbjct: 72  LQKAIFDCDLVLASCGRIDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGREDRGLTNSE 131

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L+N   + P +   PSLN+S AV ++++E  ++S  +    +K  N  A+  E+    
Sbjct: 132 LLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFN-LASSKEVHDTF 190

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
             +E  L   GY      K K+     +  +R    + E+ +LRGIV  ++ F   S +
Sbjct: 191 VEIEEMLLRVGYLLKHTSKVKI-SKFKNFILRANTSKHELNVLRGIVHQINWFLNNSKK 248


>gi|257053717|ref|YP_003131550.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
           DSM 12940]
 gi|256692480|gb|ACV12817.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
           DSM 12940]
          Length = 237

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 7/237 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVR 72
              + +VD Q   N+G +ARAM NF L+ L+LV+P +  P  +A   +  A D ++ S  
Sbjct: 2   NVSVAVVDAQTPGNVGTIARAMKNFGLSDLKLVDPPELDPDGEAYGYAGQARDDIMPSAD 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWG 131
           V    +E + + H +  T   N +  K V  P      L E +     +V ++FGRE  G
Sbjct: 62  VV-TFEEIVNNYHTVATTAITNEDATKHVRYPFVTPRELGEELKGIDSDVCLVFGREDVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NEE+A  + I S P +  +P LN+ QA  ++++E    ++   E  + E    A +  
Sbjct: 121 LSNEELAEVDQICSIPASDDYPVLNLGQAATIVLYELR--ALTVEETQLPEITDRADQPA 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +    D     LE      P EK+ K       +  R      EV  LRG+   +++
Sbjct: 179 IEGLHDQFGSFLEVID--HPEEKRAKAGRLFRRVIGRAHPTGREVRTLRGLFRRVEQ 233


>gi|253690031|ref|YP_003019221.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756609|gb|ACT14685.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 228

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V     +    AR  +  +  ++D+V+VFS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVYQEPAARWVAHGSGDILDNVQVFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  ++    P E   VL E++    +  ++FGRE  GLTNEE
Sbjct: 64  LADALADVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++  E   V S     E   PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMDVKS-----EAVQPAVAGQLSALH 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           D L+  L        VE  +K+ D L+    R  L + +  +L  ++  ++K
Sbjct: 179 DRLDRLLVNL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEK 224


>gi|145640333|ref|ZP_01795917.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|145274919|gb|EDK14781.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 205

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 10/189 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+L++     NIG  ARAM    LTQL LV+P+     E++ + SA A+ ++ + 
Sbjct: 2   LENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSI--DEQSYALSAGAEDIVKNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + ++  +A+ +   +  T+AR R+   +++ P+E A  +   I     + I+FGRER G
Sbjct: 60  MIVNSFDDAVKNCSLVIGTSARLRHLQNTLIEPRECADKV---IAHKGKIAIVFGRERIG 116

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK----NVKEQNTPA 187
           LTNEE+   +  ++ P NP + SLN++ AV L+ +E     +V + K    ++ E+N P 
Sbjct: 117 LTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSLIEKNYP- 175

Query: 188 TKGELLSFL 196
           T  +L  FL
Sbjct: 176 TADQLAYFL 184


>gi|87124813|ref|ZP_01080661.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
 gi|86167692|gb|EAQ68951.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
          Length = 254

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 115/255 (45%), Gaps = 13/255 (5%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P AP+L        ++LV+P    N+G VAR   N+ +T LRLV PR      +AR  +
Sbjct: 6   APGAPRL-------CVVLVEPAGPINLGSVARLCANYAITDLRLVAPRCNPADPEARRMA 58

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFS 117
            +   V+DS   + +L  A+     + AT  R  +    +  P++    L         S
Sbjct: 59  VHGQAVLDSATHYPDLISALHGCRRVVATCGRLDHGTIPLHPPEQVLPWLLADHGAAEAS 118

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                ++FGRE  GL+N+E+ LS  +I+   +P +PSLN+S AV +++ E          
Sbjct: 119 QAAAALVFGREDRGLSNDELLLSQRVIALYSDPHYPSLNLSHAVAVVLHELERCRRQPVA 178

Query: 178 KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
               + + PA   +L   L+     L E G+        + +  +  +  R  +  +EV 
Sbjct: 179 APALDLD-PAAPQQLEDCLEAARSLLLETGFLLEHTAHAR-MAKVRGLLQRALIRSDEVA 236

Query: 238 LLRGIVSTLDKFSRQ 252
           +LRG+V  L    RQ
Sbjct: 237 MLRGMVRQLRWALRQ 251


>gi|240102381|ref|YP_002958690.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
 gi|239909935|gb|ACS32826.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
          Length = 243

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 7/246 (2%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L      P ++LV+P+   NIGMVAR M NF  ++L LVNP     SE++ S + +A  
Sbjct: 4   SLNPFVMMPSVVLVEPEGPANIGMVARTMKNFGFSRLVLVNPN---LSEESYSYAVHARD 60

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V+ +  +    +EA+        TT +    F S  AP     +          VG+ FG
Sbjct: 61  VLKNATIVETFEEALELFDLTVGTTGKPGRRFISYRAPLYPWELRETLKGYTGEVGLFFG 120

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           RE  GL NEE+   + I++ P +  +P +N++QAV ++++E  +    +  +   E   P
Sbjct: 121 RESIGLKNEELERLDLIVTIPTSEDYPVMNLAQAVAVILYELSK----TRPEPSVEALKP 176

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           AT+ E  + +      L+   Y +  E+++  +        +  L   EV  L G +   
Sbjct: 177 ATRDEKEALVRVWAELLKVLEYPKDEERREVFVKVFRKAVGKAFLYGREVHTLIGPLRRA 236

Query: 247 DKFSRQ 252
            K   +
Sbjct: 237 VKRLEE 242


>gi|261823098|ref|YP_003261204.1| RNA methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261607111|gb|ACX89597.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
          Length = 228

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V          AR  +  +  ++D+V+VFS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TAHQEPAARWVAHGSGDILDNVQVFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F+    P E   +L E+I    +  ++FGRE  GLTNEE
Sbjct: 64  LADALADVDFTVATTARSRAKFRYYCTPAELTDLLQEKIQWMASAALVFGREDTGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++          +   +   PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVFCYQL-----AGLMQVKPDAVQPAVAGQLSALH 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           D L+  L        VE  +K+ D L+    R  L + +  +L  ++  ++K   +
Sbjct: 179 DRLDRLLVNL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEKRLPK 228


>gi|315231328|ref|YP_004071764.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
 gi|315184356|gb|ADT84541.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
          Length = 245

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 116/245 (47%), Gaps = 4/245 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +ILV+P+   NIG VARAM NF++ +L LVNP +     +A   + +A  V+++ ++ 
Sbjct: 3   VAVILVEPEYQMNIGFVARAMKNFDVKELILVNPPE--LRGEAYKFAMHAKDVLENAKIV 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + EA+  +     TT  +   +     P             G  +GI FGRE  GL+N
Sbjct: 61  KTVDEALKIVDVAVGTTGISGKVYLPERTPISPEEFAKRAFLYGGKIGIFFGRESKGLSN 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP-ATKGELL 193
           EE+   +  ++ P +  +P +N+S AV ++++E  +  + +     + ++   AT+ E  
Sbjct: 121 EELEKMDFTVTIPTSEEYPVMNLSHAVAVVLYEIYKQRVKAEISTEENRHLRKATREEKD 180

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS-TLDKFSRQ 252
             + Y    LE   Y +   ++K     L  +  R  +   E++ L G +   ++K  R 
Sbjct: 181 ILVKYWSELLETLNYPKDPIRRKYFTIMLRRVIGRSFIYAREIYSLYGPLRLAIEKIKRY 240

Query: 253 SSRRN 257
            + ++
Sbjct: 241 ENDKH 245


>gi|322369305|ref|ZP_08043870.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
           DX253]
 gi|320551037|gb|EFW92686.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
           DX253]
          Length = 249

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 9/254 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           P + +V+P+   NIG +ARAM NF +  L+LVNP +     +A   +  A   V+ +   
Sbjct: 3   PAVAIVEPKTPGNIGTIARAMKNFGMDDLKLVNPPEFGRDSEAYGFAGQAREDVLPNYDE 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGL 132
                E I + H +  T   N +    V  P +    L E +     +  +IFGRE  GL
Sbjct: 63  V-TFDELIENYHTVGMTATTNEDASHHVRFPFKTPRELAESLQDVTTDTVLIFGREANGL 121

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           TNEE++  + + S P +  +P+LN+ QA  + ++E    ++  ++         A + E+
Sbjct: 122 TNEELSRIDEVCSIPASASYPALNLGQAATVTLYELRTLTVEETQLP-DVSRERADEAEI 180

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             F       LE  G  +P EK +K +  +  +F R      E+  LRGIV    + +++
Sbjct: 181 EGFYGAFSDLLETVG--QPTEKHEKNMRMIRRVFGRAHPTGREIATLRGIVR---RANQR 235

Query: 253 SSRRNNVLLQKTEK 266
           +S  +     + +K
Sbjct: 236 ASASDTPRTSRNDK 249


>gi|313126187|ref|YP_004036457.1| RNA methyltransferase, trmh family, group 1 [Halogeometricum
           borinquense DSM 11551]
 gi|312292552|gb|ADQ67012.1| RNA methyltransferase, TrmH family, group 1 [Halogeometricum
           borinquense DSM 11551]
          Length = 249

 Score =  225 bits (574), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 7/230 (3%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRVFSNLKEAIAD 83
             N+G +ARAM NF LT L+LVNP    P  +A   + +A   V+ +        E + +
Sbjct: 17  PGNVGTIARAMKNFGLTDLKLVNPPPLEPDGEAYGFAGHAREDVLPNADEV-TFDEVVEE 75

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNEEIALSNA 142
            H +  T   N ++ K V  P +  + + E + + +    ++FGRE  GL N+E+A  + 
Sbjct: 76  YHTVATTAITNEDSRKHVRFPYKTPVEVRESLETVETKTALVFGREGRGLNNDELARLDE 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
           I S P +  +P LN+ QA  ++++E    ++  ++     +   AT+ E+  F D  E  
Sbjct: 136 ICSIPASDDYPVLNLGQAATILMYELRSLTVDETQLP-DVERERATESEIERFYDNFENF 194

Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV-STLDKFSR 251
           LE   +     K+ K +  +  +  R      EV  L G+     ++F R
Sbjct: 195 LEHAEHRD--HKRPKTMRMIRRLIGRAHPTDREVHTLTGLFRRATNRFDR 242


>gi|148239933|ref|YP_001225320.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147848472|emb|CAK24023.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 229

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 28  IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFI 87
           +G VAR   NF +  LRLV PR      +A   + +   V+     F+ L EA++D   +
Sbjct: 1   MGSVARLCANFGINDLRLVAPRCNPNDAQALRMAVHGQTVLHQASTFTTLLEALSDCQRV 60

Query: 88  YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP 147
            A+  R  +    +    +    + E + SG  V ++FGRE  GL+NEE+ LS+ ++   
Sbjct: 61  VASCGRIDHGDIPLQTTDQVMPWVGEGLKSGAQVALVFGREDRGLSNEELLLSHRVVRLH 120

Query: 148 VNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205
               +PSLN+S AV +++ +   + I   + ++   + +  A   +L + L   E  L +
Sbjct: 121 TVDHYPSLNLSHAVAIVLHDLQRSRIGAAADDQQALQASEAAAPPQLEACLRDAEALLLD 180

Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            G+  P   K + +  +  +  R  +  +E+ +LRG+V  L    R
Sbjct: 181 VGFLLPHTAKAR-MAKIKGLLRRASIQAQELAMLRGMVRQLRWAIR 225


>gi|33865253|ref|NP_896812.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632422|emb|CAE07234.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
          Length = 238

 Score =  224 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 5/237 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            V++LV+P    NIG VAR   NF +  LRLVNPR     + A   + +A  ++    + 
Sbjct: 3   VVVVLVEPAGPLNIGSVARLCANFGVDALRLVNPRCEVLCDDALRMAVHATPLLRQATIH 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+ AI D   + AT  R  +    +  P  A   L   +       ++FGRE  GLTN
Sbjct: 63  PDLEAAIGDCSRVIATCGRLDHGGIPLQTPDTAINWL---LAGDPPHALVFGREDRGLTN 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+ L   +++      +PSLN+S AV +++ +   + + +     K+  +PA   +L  
Sbjct: 120 DELRLCQRVLTLHSQAAYPSLNLSHAVAVVLHDLARHQLQARAPQAKD-PSPAPAADLTG 178

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            LD     L E G+  P  +  + +  +  +  R     EEV L RG+V  L    R
Sbjct: 179 LLDDAAELLLEAGFLLPHTRAAR-MGKVRDLLQRATCRAEEVALFRGMVRQLRWAIR 234


>gi|254525547|ref|ZP_05137599.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9202]
 gi|221536971|gb|EEE39424.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9202]
          Length = 249

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 2/240 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S +A+  +      + + +VF +
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCEIFSLEAKKMALKGQKFLKNCKVFDD 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++AI D   + A+  R      S+    E             N+ IIFGRE  GLTN E
Sbjct: 72  LQKAIFDCDLVLASCGRIDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGREDRGLTNSE 131

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L+N   + P +   PSLN+S AV ++++E  ++S  +    +K  N  ++K    +F+
Sbjct: 132 LLLANKTFNIPTSQNNPSLNLSHAVSIVLYELNKSSKKNLNNELKVFNLASSKEVYDTFV 191

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
           + +E  L   GY      K K+     +  +R      E+ +LRGIV  ++ F   S ++
Sbjct: 192 E-IEEMLLRVGYLLKHTSKVKI-SKFKNFILRANTSIHELNVLRGIVHQINWFLNNSKKK 249


>gi|296284003|ref|ZP_06862001.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 223

 Score =  224 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M NF L ++RLV PRDGWP+  A  ++A AD ++D  +VF +  EA+AD   ++ATT R 
Sbjct: 1   MANFGLGEMRLVTPRDGWPNPSAGPAAAGADFILDKAQVFESTAEAVADCAHVFATTVRK 60

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R   K V+ P++AA  ++           +FG ER GL  E++AL+  I++ P++P F S
Sbjct: 61  RGVTKPVVTPEQAADAIHAEP---GRSAFLFGPERSGLETEDVALARTILTVPIDPEFGS 117

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
           LN++QAV+L  +E  +   ++     ++   PA + EL   + +LE  LE +GYF P  +
Sbjct: 118 LNLAQAVILCAYEWSKRKGLAQPPK-EDLLPPAPQDELEGLIAHLERMLEPKGYFLPESR 176

Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRN 257
                  L  +  +P     EV  LRG++S+L++   + +  +
Sbjct: 177 ADATRRTLRGVLTKPGWNHLEVRTLRGVLSSLEREPGRGAPGS 219


>gi|78213466|ref|YP_382245.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
 gi|78197925|gb|ABB35690.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
          Length = 243

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 7/241 (2%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P    NIG VAR   NF +++LRLV PR    S++A   + +   ++ +  V  +L 
Sbjct: 2   LVEPAGPLNIGSVARLCANFGVSELRLVAPRCDHLSDEAMLMAVHGQALLQAAVVVPDLL 61

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNVGIIFGRERWGLTN 134
            AI D      +  R  +    +  P++A   L         SG  + ++FGRE  GL+N
Sbjct: 62  TAINDCRRTVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPMAMVFGREDRGLSN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN--VKEQNTPATKGEL 192
            E+ L   ++       +PSLN+S AV +++ E    +  ++E          PA    L
Sbjct: 122 SELRLCQRVLCLQSGEAYPSLNLSHAVAVVLHELARLNSGTTETRCIEPPSPDPAAAKAL 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            + ++     L E G+        + +  +  +  R  +  EEV LLRG+V  L    R 
Sbjct: 182 SACIEDASDLLLEAGFLLEHTAAAR-MAKVRDLLQRATVRAEEVALLRGMVRQLRWAIRA 240

Query: 253 S 253
            
Sbjct: 241 K 241


>gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
 gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
          Length = 230

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 14/229 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+ ++ ENIG +AR M NF   +L L N      S+++  ++A+A  V+D      N
Sbjct: 4   VVLVELKIPENIGFIARVMKNFGFEKLVLYNCNV---SKESYITAAHAKDVLDKAVKVEN 60

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           LKE + + + +  TT  R+R   + +  P      L E I       I+FGRE +GL +E
Sbjct: 61  LKEYLEEKNLVVGTTGVRSRRVERYIRRPYYTPEELREMIK--GETAILFGREDYGLYDE 118

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L N I+S P +  +P +N+S A  ++++E       S  K   E+   AT+ ++   
Sbjct: 119 ELKLCNVIVSVPTSEEYPVMNVSHAAAVILYEL------SKGKFEFEKEEIATQKDVDRL 172

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
           ++Y E  ++   +  P  +  +M   L   F R  L + EV  + GI+ 
Sbjct: 173 VEYFEKLMKSIWF--PEHRIGRMKVVLKRAFGRAALTKYEVDAISGIIR 219


>gi|76802521|ref|YP_327529.1| tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160]
 gi|76558386|emb|CAI49977.1| probable tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM
           2160]
          Length = 264

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 6/236 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDS 70
                + +V  +   N+G +AR+M NF L++L LV+P +  P  +A   + +A   V+ +
Sbjct: 1   MPNIAVAVVGAETPGNVGTIARSMKNFGLSELYLVDPPELDPDGEAYGFAGHAREDVLPN 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRER 129
                         + +  T   N +  K V  P  E A + +E      +V I+FGRER
Sbjct: 61  ATEVE-FSYLTEQFYTVACTATTNEDATKHVRYPFIEPAALSDELAGLDADVCIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLTN+E+A  + I S P +  +P LN++QA  ++++E  E ++  + ++ K+ +  A +
Sbjct: 120 VGLTNDELAQLDRICSIPADGDYPVLNLAQAATIVLYELRELTVEET-QHPKQAHERADE 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            E+    +     L E G   P EK  K       +  R      E   LRG++  
Sbjct: 179 HEIEGLHETFSEYLHEVG--HPEEKIPKTERLFRRLAGRASPTGREARTLRGVLRR 232


>gi|126696500|ref|YP_001091386.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301]
 gi|126543543|gb|ABO17785.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 250

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 2/239 (0%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P    N+G VAR   NF + +LR+V+P+    S +AR  +      +   RVF +
Sbjct: 12  VILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEARKMALKGQKFLKHCRVFDD 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+ D   + A+  R   N  S     E             N+ IIFGRE  GLTN E
Sbjct: 72  LQKAVFDCDLVLASCGRIDVNKDSFFVSSEDIFDWTLSFKKINNLAIIFGREDRGLTNNE 131

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L+N   + P +   PSLN+S AV ++++E  ++S  +     +  N  ++K    +F+
Sbjct: 132 LLLANKTFNIPTSQDNPSLNLSHAVSIVLYELNKSSKKNLNNESRAFNLASSKAVHDTFM 191

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
           + +E  L   GY      K K+     +  +R      E+ +LRGIV  ++ F   S +
Sbjct: 192 E-IEEMLMRVGYLLKHTSKAKI-SKFKNFTLRANTSMHEINVLRGIVHQINWFLNNSKK 248


>gi|227114272|ref|ZP_03827928.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 228

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V          AR  +  +  ++D+V++FS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVHQEPAARWVAHGSGDILDNVQMFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+ F  ATTAR+R  +     P E   VL E++    +  ++FGRE  GLTNEE
Sbjct: 64  LAEALADVDFTVATTARSRAKYHYYCTPAELTDVLQEKVQWMASAALVFGREDVGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++  E   V       E   PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVK-----PEATQPAVAGQLSALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           D ++  L        VE  +K+ D L+    R  L + +  +L  ++  ++K   +
Sbjct: 179 DRMDRLLVTL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEKSLPK 228


>gi|116073105|ref|ZP_01470367.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
 gi|116068410|gb|EAU74162.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
          Length = 241

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 9/239 (3%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           +P    N+G VAR   NF +  LRLV PR       A   + +   V+ S R++  L  A
Sbjct: 2   EPAGPLNVGSVARLCANFAVHDLRLVTPRCDPSDPDALRMAVHGRSVLTSARIYPTLLAA 61

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           ++D   + AT  R  +     L P EA +         Q + ++FGRE  GLTN E+ LS
Sbjct: 62  VSDCSRVVATAGRLDHGTIP-LGPPEAVLPWAISGSGQQPIALVFGREDHGLTNAELLLS 120

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK-------EQNTPATKGELL 193
             +I+   +  +PSLN+S AV +++ +        S             +  PA    L 
Sbjct: 121 QRVITLHSSDTYPSLNLSHAVAVVLHDIARLQTGPSPHAEPVLVSPETPETEPAGPKALE 180

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           + LD  E  L E G+      + + +  +  +  R  +  +EV LLRG+V  +    R 
Sbjct: 181 ACLDDAEELLLEVGFLMKHTARAR-MAKVRGLLQRGLIRADEVALLRGMVRQMRWAVRH 238


>gi|212703150|ref|ZP_03311278.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
 gi|212673416|gb|EEB33899.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
          Length = 253

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDSVRVFS 75
           ++LV  +  ENIGM ARA  N     +RLV P + W  EKAR  +      V+D V+V  
Sbjct: 8   VVLVQTRFPENIGMAARACVNMGSRSIRLVAP-ERWDREKARPLATPKGQGVLDDVQVLP 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++  A+AD   +  TTAR     +S+L+P++AA  + + +  G+ V I+FG E  GL N+
Sbjct: 67  DVSAAVADCSLVIGTTARTGGWRRSLLSPEQAAGEVAQALERGEKVAIVFGPEDRGLDND 126

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-------- 187
            I     +++ P NP   SLN++Q+VLL+++EC +  + + +     + TPA        
Sbjct: 127 AIQHCQRLVTIPTNPEASSLNLAQSVLLLLYECAKA-VRARQHEAAGEKTPAEGGSGRVI 185

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +  +    LD L+  L              ++     +  R ++ R E   L G+   + 
Sbjct: 186 SSADYERLLDNLKDMLLRLDCLHGDNPDYFLMPW-RRLLARAQVRRHEYDALMGLCRQVR 244


>gi|296108951|ref|YP_003615900.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           infernus ME]
 gi|295433765|gb|ADG12936.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           infernus ME]
          Length = 226

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 11/227 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P+ G N+G VAR M NF   +LR+V  R    +++A+  + +A  +++  + +  
Sbjct: 4   VILVHPKYGGNVGSVARVMKNFGFKELRIVGDRKII-NDEAKMMAVHAKDILEKAKFYET 62

Query: 77  LKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              AI DL FI AT+ AR  +RN  +  + P+E A  + E      N+G++FGRE  GL 
Sbjct: 63  FDSAIEDLDFIIATSGARGGDRNLKRVPITPRELAEKIKEVR---GNIGLVFGREDDGLY 119

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           NEE+   + ++S P +  +P +N+S AV ++++E   + + +   ++  +   A+K +  
Sbjct: 120 NEELDKCDLLVSIPTSEEYPIMNLSHAVAVILYELYISKVGNKFLDINIRE--ASKEDKE 177

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
             +      ++++    P  KK+        +  R  +  +E + L 
Sbjct: 178 LLIKKFNEFIDKKD--IPEHKKELCKIIFKRLVNRAFITGKEAWTLM 222


>gi|212224617|ref|YP_002307853.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009574|gb|ACJ16956.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 239

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 7/228 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV+P+   NIGM+AR M NF   +L L+NP     +E++   + +A  V++   +   
Sbjct: 5   VILVEPEGPANIGMIARTMKNFGFNELVLINPNI---TEESYLYAVHARDVLERAAIVET 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +EA+  +     TT +    +    AP     +          +GI FGRE  GL NEE
Sbjct: 62  FEEALGLVDLAVGTTGKPGKRYIPDRAPMMPWELAEALQGYSGRIGIFFGRESIGLKNEE 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +   +  ++ P + ++P +N+SQAV ++++E  +       K +     PAT+ E  + +
Sbjct: 122 LERMDLTVTIPTSEIYPVMNLSQAVAVILYELAKGR----RKAIHPSLEPATREEKEALI 177

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
                 L+   Y +  E+++  +        R  L   EV  L G + 
Sbjct: 178 RTWGRLLDVLDYPKDPERREVFVKIFRRFVGRTILYGREVHTLIGPLR 225


>gi|123966380|ref|YP_001011461.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515]
 gi|123200746|gb|ABM72354.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 236

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 2/236 (0%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           +V+P    NIG +AR   NF++ +LR+V+P+    S +A+  +      I++ RVF++++
Sbjct: 1   MVEPNGPINIGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGQKYINNCRVFNSIE 60

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +AI D   + AT  R   +        E             N+ I+FGRE  GLTN E+ 
Sbjct: 61  QAIFDCDLVLATCGRIDLSNDIECENPEVISKWISSFKVINNLAILFGREDRGLTNSELL 120

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
            ++ I +   +  +PSLN+S AV ++++E  + S  + +K++K  N  ++K    SF D 
Sbjct: 121 FAHKIFNIKTSQDYPSLNLSHAVAIILYELNKCSKNTPQKDLKVFNLASSKQIYESFKD- 179

Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           LE  L   GY        K+        ++ +    E+ +LRGIV  +  F   S 
Sbjct: 180 LEEILIRTGYLLEHTSFSKI-SKFKKFILKAKTSSHEINVLRGIVRQIKWFLNNSK 234


>gi|254173135|ref|ZP_04879808.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
 gi|214032544|gb|EEB73373.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
          Length = 233

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 7/238 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   NIGM+AR M NF  ++L LVNP     +E++ + + +A  V++   + 
Sbjct: 2   ISLVLVEPEGPANIGMIARTMKNFGFSRLVLVNPN---LTEESYAYAVHATDVLERAVIV 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               EA+        TT +    F    AP     +          VG+ FGRE  GL N
Sbjct: 59  DTFDEALGLFDLTVGTTGKPGKRFIPYRAPLYPWELRETLNGYTGEVGLFFGRESIGLKN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+   + I++ P +  +P +N++QAV ++++E  +       +   E   PAT+ E  +
Sbjct: 119 DELERLDLIVTIPTSDAYPVMNLAQAVAVILYELSKA----KPEPSVEALKPATRDEKEA 174

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +      L    Y +  E++   +        +  L   EV  L G +    K   +
Sbjct: 175 LVRVWAELLNVLNYPKDEERRAVFVKVFRKAVGKAFLYGREVHTLIGPLRRAVKRLEE 232


>gi|126178718|ref|YP_001046683.1| RNA methyltransferase [Methanoculleus marisnigri JR1]
 gi|125861512|gb|ABN56701.1| RNA methyltransferase, TrmH family, group 1 [Methanoculleus
           marisnigri JR1]
          Length = 232

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 15/244 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+L++P    N+G  AR M NF  T+L LVNP      + A   +++A  V++  
Sbjct: 1   MPEISIVLIEPLYEGNVGFTARVMKNFGFTRLVLVNPCT--LGDDAIMRASHARDVLEDA 58

Query: 72  RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129
           R    +K+   +  F+ ATT   +++    +  P  A   + E +      V I+FGRE 
Sbjct: 59  RRM-TIKKVYNEFDFVVATTGEVSKSVCTPMRMPYYAPAEVREIVGDIDGTVAILFGREN 117

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           WGL N E+A +N I + P + ++P LN+S AV ++ +E             +     A+ 
Sbjct: 118 WGLANTELARANLICTIPTSEIYPILNLSHAVGILCYELANL--------PRGTYPLASP 169

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            E+ S   +++  L       P  K++  +  +  +  R +L   E   L G++   +  
Sbjct: 170 VEMDSLYRHIDAFLNRID--HPDFKRENTMTLIRRVLGRTKLTIREASTLHGLMRRTEWH 227

Query: 250 SRQS 253
               
Sbjct: 228 LENK 231


>gi|330508017|ref|YP_004384445.1| TrmH family RNA methyltransferase [Methanosaeta concilii GP-6]
 gi|328928825|gb|AEB68627.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta concilii
           GP-6]
          Length = 245

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 107/251 (42%), Gaps = 15/251 (5%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++LV+P    N+G VARAM NF    L LVNP        A   +++A  V+   R 
Sbjct: 2   NLRVVLVEPLYEGNVGSVARAMKNFGFHDLALVNPCKIEDYGCA--MASHARDVLQMSRS 59

Query: 74  FSNLKEAIADLHFIYATTARN-----RNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGR 127
           FS L EA+   + +  TT +       +    +  P      L E++   +  V ++ GR
Sbjct: 60  FSTLAEALEGANLVVGTTGKRLEHEQHHLRLHLRVPCLTPAGLAEKLRDKEGMVALLLGR 119

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E  GL ++EI+L + I+S P +  +P +N+S +  ++ +E       SS          A
Sbjct: 120 EDCGLNSDEISLCDMIVSIPTSEEYPVMNLSHSAAILFYELSGIGSNSSS-----SVQMA 174

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            K  L    +     L +  Y  P  K+   L  L  IF R EL   E   L GI+  + 
Sbjct: 175 RKETLNLLQERAGDLLADIAY--PEHKEDYTLLMLRRIFGRAELTEREARALLGIIKRIR 232

Query: 248 KFSRQSSRRNN 258
                  + ++
Sbjct: 233 WRISHGQKGSD 243


>gi|227327991|ref|ZP_03832015.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 228

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V          AR  +  +  ++D+V++FS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVHQEPAARWVAHGSGDILDNVQMFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+ F  ATTAR+R  +     P E   VL E++    +  ++FGRE  GLTNEE
Sbjct: 64  LAEALADVDFTVATTARSRAKYHYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++  E   V       E   PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAELMQVK-----PEAAEPAVAGQLSALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           D ++  L        VE  +K+ D L+    R  L + +  +L  ++  ++K   +
Sbjct: 179 DRMDRLLVTL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEKRLPK 228


>gi|157368927|ref|YP_001476916.1| putative RNA methyltransferase [Serratia proteamaculans 568]
 gi|157320691|gb|ABV39788.1| RNA methyltransferase, TrmH family, group 1 [Serratia
           proteamaculans 568]
          Length = 228

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     T LR+V+  +      AR  +  A  ++D V+ F+ 
Sbjct: 5   IVLVAPARPENVGAAARAMKTMGFTSLRIVDS-EAHLQPAARWVAHGAGDILDGVQTFAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+AD+ F  ATTAR+R  F     P++    L+ER        ++FGRE  GLTNEE
Sbjct: 64  LEQALADVDFTVATTARSRARFHYYCTPQQLLGQLSERSQWVGQAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++  E   VS+      Q   A +G+L +  
Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMKVSAP-----QEPVANEGQLKALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              +  L   G     + +  +   L        L + +  +L  ++  ++K
Sbjct: 179 QRADGLLGALGVGDDQKLRDWLHQRL------GTLQQRDTAMLHTLLHDIEK 224


>gi|50122813|ref|YP_051980.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613339|emb|CAG76790.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 228

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV+P   EN+G  ARAM     + LR+V          AR  +  +  ++D+V+VFS 
Sbjct: 5   IILVEPARAENVGAAARAMKTMGFSSLRIVGS-TVHQEPAARWVAHASGDILDNVQVFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  ++    P E   VL E++    +  ++FGRE  GLTN+E
Sbjct: 64  LAEALVDVDFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++  E   V       E   PA  G+L +  
Sbjct: 124 LELADVLTGVPMKADYPSLNLGQAVMVYCYQLAEFMQVK-----PEAVQPAVAGQLSALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           D L+  L        VE  +K+ D L+    R  L + +  +L  ++  ++K   +
Sbjct: 179 DRLDRLLVNL----AVEDDEKLRDWLHQRLGR--LEQRDTAMLHRLLHDIEKRLPK 228


>gi|308185599|ref|YP_003929730.1| RNA methyltransferase [Pantoea vagans C9-1]
 gi|308056109|gb|ADO08281.1| putative RNA methyltransferase [Pantoea vagans C9-1]
          Length = 245

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 12/231 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV P   ENIG  ARAM     +QLR+V   D W    AR  +  A  ++D+V+ F+ L
Sbjct: 17  ILVSPARPENIGAAARAMKTMGFSQLRIVAS-DAWQDPAARRVAHGAGEILDNVQTFATL 75

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD+ F  ATTAR+R  F+    P++    L E+     ++ ++FGRE  GLTNEE+
Sbjct: 76  AEALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEEL 135

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              + +   P+   +PSLN+ QAV++  ++  + + V +        + A   +L +   
Sbjct: 136 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSKLNQVEAPVA-----SAADGQQLQALRQ 190

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                L +       +    +   +        L + +  +L  ++  ++K
Sbjct: 191 RFHQLLAQLDVSDDEKLSDWIDQRV------GLLEQRDSAMLHRLLHDIEK 235


>gi|57641905|ref|YP_184383.1| TrmH family tRNA methyltransferase [Thermococcus kodakarensis KOD1]
 gi|3253066|dbj|BAA29043.1| spoU [Pyrococcus sp.]
 gi|57160229|dbj|BAD86159.1| probable tRNA/rRNA methyltransferase, SpoU family [Thermococcus
           kodakarensis KOD1]
          Length = 235

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 7/238 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   NIGM+AR M NF  ++L L+NP     +E++ + + +A  V+++  + 
Sbjct: 2   ISVVLVEPEGPANIGMIARTMKNFGFSRLVLINPN---LTEESYAYAVHARDVLENALIL 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + ++A+    F   TT +    F    AP     ++         VGI FGRE  GL N
Sbjct: 59  DSFEKALELFDFTVGTTGKPGKRFIPHRAPLMPWELVGLIKDYPGEVGIFFGRESIGLKN 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+   +  ++ P +  +P +N++QA  ++++E  +       +   E   PAT+ E  +
Sbjct: 119 EELDAMDVTLTIPTSEEYPVMNLAQAAAVVLYELSK----KRPEPYVEALKPATREEKEA 174

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +   E  L    Y +  E++   +        R  L   EV  L G +    K   +
Sbjct: 175 LVRTWEKLLNTLDYPKDAERRDVFVKVFQRAVGRAFLYGREVHTLIGPLRKALKRLEE 232


>gi|71083833|ref|YP_266553.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062946|gb|AAZ21949.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 237

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S      IL  PQL ENIG  ARA+ NFN  +L +V P+  +P++K  ++S  A  +I +
Sbjct: 2   SFNNISFILHQPQLSENIGACARAVKNFNFKKLVIVKPKPIFPNDKILATSVGAKDLIIN 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +V   L+ A+  + ++ AT+AR RN     +   +      ++I   + +  +FG E  
Sbjct: 62  AKVHETLESAVKKVDYVVATSARFRNKNIKHINLDD-----LKKIDFNKKIAFLFGSEAS 116

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-PATK 189
           GL+N EI+ +N  +  P NP F SLN+S +V+++         +   K  K +    A+K
Sbjct: 117 GLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGAKYSKSKKVNLASK 176

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++ +  +     LEE+ +F+P+EK+  ML++L SIF + EL  +E  +L  + ++L K 
Sbjct: 177 KDIQAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSKK 236

Query: 250 S 250
            
Sbjct: 237 G 237


>gi|332748915|gb|EGJ79339.1| hypothetical protein SF434370_4804 [Shigella flexneri 4343-70]
          Length = 261

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
             + +   L        ++    +   L        L + +  +L  ++  ++K S    
Sbjct: 177 LRERVMALLTALAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230

Query: 255 R 255
           R
Sbjct: 231 R 231


>gi|261403375|ref|YP_003247599.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           vulcanius M7]
 gi|261370368|gb|ACX73117.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           vulcanius M7]
          Length = 227

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+ G N+G +AR M NF+  +LR+V  ++   +++A   + +A  ++++ + +
Sbjct: 2   ISVVLVNPKYGGNVGSIARVMMNFDFKELRIVGSKE-ILNKEAYMMAVHAKDILNNAKFY 60

Query: 75  SNLKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +EAI DL F+ AT+ AR  +RN  +  + PKE A+ L E      NVGI+FGRE  G
Sbjct: 61  DTFEEAIKDLDFVIATSGARGGDRNLKRVPITPKELALQLLEIE---GNVGIVFGREDDG 117

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LTNEE+   + ++S P + L+P +N+S AV ++++E     + +   +V  +   A++ +
Sbjct: 118 LTNEELEKCDLLVSIPTSNLYPIMNLSHAVAVILYEIYSTRVGNRFLDVNMRE--ASRKD 175

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
               ++     ++      P  KK+        +  R  +  +E + L 
Sbjct: 176 KDLLINKFNEFIDRNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLM 223


>gi|333022343|gb|EGK41581.1| hypothetical protein SFK304_0112 [Shigella flexneri K-304]
          Length = 261

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
             + +   L        ++    +   L        L + +  +L  ++  ++K S    
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230

Query: 255 R 255
           R
Sbjct: 231 R 231


>gi|333010495|gb|EGK29928.1| hypothetical protein SFVA6_0291 [Shigella flexneri VA-6]
          Length = 261

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSSDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
             + +   L        ++    +   L        L + +  +L  ++  ++K S    
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230

Query: 255 R 255
           R
Sbjct: 231 R 231


>gi|15790377|ref|NP_280201.1| hypothetical protein VNG1347C [Halobacterium sp. NRC-1]
 gi|10580859|gb|AAG19681.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 253

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 112/246 (45%), Gaps = 6/246 (2%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P  + +   P + +VD +   N+G +ARAM NF   +L LV+P       +A   + +
Sbjct: 5   STPTTRPAMSKPAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGH 64

Query: 64  AD-CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NV 121
           A   ++   R   +    +++ H +  T   N +       P      L + +   +   
Sbjct: 65  AREDILPEAREL-SFDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPT 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            ++FGRER GLTN+E+A  + + S P +  +P +N+ Q+  + ++E  + ++  ++    
Sbjct: 124 ALVFGRERVGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAMSETQLPDV 183

Query: 182 EQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
           E++  A + E+  F ++    L+   Y  P EK+ K +  L  +  R      E+  + G
Sbjct: 184 ERHR-ADEAEIEQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHG 240

Query: 242 IVSTLD 247
           ++   +
Sbjct: 241 LLRRAE 246


>gi|289595721|ref|YP_003482417.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|289533508|gb|ADD07855.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 235

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 17/234 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+ V+PQ   NIG +AR M NF    L LVNP +    E A   S +A  +I++  + +N
Sbjct: 5   IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 62

Query: 77  LKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +E    L ++ AT+       +   +  L P+E A  +        N+GI+FGRE +GL
Sbjct: 63  FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFS---GNIGIVFGRENYGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            NEEI   +++I+ P +  +P +NI+ A  ++++E         EK  +E    A + EL
Sbjct: 120 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFEL 173

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               +     L    +  P  K+K        I  R  L + E   + G++  +
Sbjct: 174 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 225


>gi|304396506|ref|ZP_07378387.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
 gi|304356015|gb|EFM20381.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
          Length = 245

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 12/231 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV P   ENIG  ARAM     +QLR+V   D W    AR  +  A  ++D+++ F+ L
Sbjct: 17  ILVSPARPENIGAAARAMKTMGFSQLRIVAS-DAWQDPAARRVAHGAGDILDNIQTFATL 75

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+AD+ F  ATTAR+R  F+    P++    L E+     ++ ++FGRE  GLTNEE+
Sbjct: 76  ADALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEEL 135

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              + +   P+   +PSLN+ QAV++  ++    + V +        + A   +L +   
Sbjct: 136 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQLSTLNQVEAPVA-----SAADGQQLQALRQ 190

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                L +       +    +   +        L + +  +L  ++  ++K
Sbjct: 191 RFHQLLAQLEVSDDEKLSDWIDQRV------GLLEQRDSAMLHRLLHDIEK 235


>gi|289192450|ref|YP_003458391.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
           FS406-22]
 gi|288938900|gb|ADC69655.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
           FS406-22]
          Length = 228

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +ILV+P+   N+G +AR M NF   +LR+V  R    +E A   + +A  ++D+ + +
Sbjct: 3   ISVILVNPKYSGNVGSIARVMMNFGFEELRIVGDRSIINNE-AYMMAVHAREILDNAKFY 61

Query: 75  SNLKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               EAI DL F+ AT+ AR  +RN  +  + PKE A  + E      NVGI+FGRE  G
Sbjct: 62  KTFDEAIEDLDFVIATSGARGGDRNLKRVPITPKELADKILEV---KGNVGIVFGREDDG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NEEI   + ++S P +  +P +N+S AV ++++E     + +   ++  +   A+K +
Sbjct: 119 LRNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYAKKVGNKFLDINMRE--ASKED 176

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
               +      +++     P  KK+        +  R  +  +E + L 
Sbjct: 177 KELLIKKFNEFIDKNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLM 224


>gi|254168566|ref|ZP_04875409.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|197622400|gb|EDY34972.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 243

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 17/234 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+ V+PQ   NIG +AR M NF    L LVNP +    E A   S +A  +I++  + +N
Sbjct: 13  IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 70

Query: 77  LKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +E    L ++ AT+       +   +  L P+E A  +        N+GI+FGRE +GL
Sbjct: 71  FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFS---GNIGIVFGRENYGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            NEEI   +++I+ P +  +P +NI+ A  ++++E         EK  +E    A + EL
Sbjct: 128 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFEL 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               +     L    +  P  K+K        I  R  L + E   + G++  +
Sbjct: 182 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 233


>gi|317046840|ref|YP_004114488.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316948457|gb|ADU67932.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
          Length = 234

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 12/231 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV P   ENIG  ARAM     ++LR+V   D W    AR  +  A  ++DSV+ +  L
Sbjct: 6   ILVSPARPENIGAAARAMKTMGFSELRIVAS-DAWQDPAARRVAHGAGEILDSVKTYDTL 64

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+ D+ F  ATTAR+R  F+    P +   +L E+      + ++FGRE  GLTNEE+
Sbjct: 65  SEALQDVDFSVATTARSRAKFRYYATPVQVESILQEKRQWLNRIALVFGREDSGLTNEEL 124

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              + +   P+   +PSLN+ QAV++  ++       +  + V +    A   +L +   
Sbjct: 125 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQL-----SALNQVVAQPAAVADGQQLQALRA 179

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +  L         +    +   +        L + +  +L  ++  ++K
Sbjct: 180 RFQQLLVRLEVDDDAKMADWIDQRI------GLLEQRDSAMLHRLLHDVEK 224


>gi|55376959|ref|YP_134809.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55229684|gb|AAV45103.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 241

 Score =  218 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRV 73
             + +VD +   N+G +AR+M NF L++L LV+P +  P  +A   +  A D ++ + R 
Sbjct: 2   ISVAVVDAETPGNVGTIARSMKNFGLSELLLVDPPELDPDGEAYGFAGQARDDILPNART 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGL 132
                + + + H +  T   N +    V  P      L + +   + ++ ++FGRER GL
Sbjct: 62  V-TFDDIVENYHTVACTATTNEDPANHVRYPATTPADLADSLQDVEGDICVVFGRERVGL 120

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           +N+E+A  + I S P +  +P LN+ QA  ++++E  E ++  + ++ ++ +T A    +
Sbjct: 121 SNDELARLDVICSIPASASYPVLNLGQAATIVLYELRELTVDET-QHPEQLHTLAETPAV 179

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
               +  +  L   G   P EK+ K       +  R +    E   LRG+     +   +
Sbjct: 180 EGLHEEFDRFLGAIG--HPEEKQHKARRLFRRVLGRAQPTGRETKTLRGLFRQARQRIER 237

Query: 253 S 253
           +
Sbjct: 238 A 238


>gi|300715247|ref|YP_003740050.1| RNA methyltransferase [Erwinia billingiae Eb661]
 gi|299061083|emb|CAX58190.1| RNA methyltransferase [Erwinia billingiae Eb661]
          Length = 233

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 12/231 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV P+  EN+G  ARAM      +LR+VN +       AR  +  A  ++D+   + +L
Sbjct: 6   ILVSPRRPENVGAAARAMKTMGFDELRIVNSQ-AHLEPAARWVAHGAGEILDNATHWDSL 64

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A+AD+ F  ATTAR+R  F+    P++   +L E+    Q+  ++FGRE  GLTNEE+
Sbjct: 65  DAALADIDFSIATTARSRAKFRYYATPQQVQSLLEEKQQWVQSAALVFGREDTGLTNEEL 124

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           AL + +   P+   +PSLN+ QAV++  ++      VS+ K       PA   +L +   
Sbjct: 125 ALVDVLTGIPMAADYPSLNLGQAVMVYCYQLSALRQVSAIK-----EAPADAQQLDALRQ 179

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L+  L         +    +   L        L + +  +L  ++  ++K
Sbjct: 180 RLDRLLVSLEVSEDSKLVDWLAQRL------GLLEQRDNAMLHRLLHDVEK 224


>gi|333011385|gb|EGK30799.1| hypothetical protein SFK272_0343 [Shigella flexneri K-272]
          Length = 261

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +     +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGYGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
             + +   L        ++    +   L        L + +  +L  ++  ++K S    
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNKK 230

Query: 255 R 255
           R
Sbjct: 231 R 231


>gi|284161302|ref|YP_003399925.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
           profundus DSM 5631]
 gi|284011299|gb|ADB57252.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
           profundus DSM 5631]
          Length = 234

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 19/235 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             + LV  ++ EN+G VAR M NF   +L L N +    S     ++++A  ++ +  V 
Sbjct: 2   ISVYLVGLKIPENVGFVARVMKNFGFEKLYLYNCKVTTVS---FKTASHARDILRNAVVL 58

Query: 75  SNLKEAIADLHFIYATTA-----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               + +  ++ +  TT        R   K +  P+E    L  +      + + FGRE 
Sbjct: 59  RKFDDILDHVNMLVGTTGVTAYSYERYIRKPIFTPEEFRNFLEGKKGE---IAVAFGRED 115

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           +GL NEE+ L + ++S P NP +P +N+S AV ++++E  +      +K +       T 
Sbjct: 116 YGLFNEELELCHMLVSVPTNPEYPVMNVSHAVAVILYELSKGKYGLEDKTI------VTA 169

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
            E+   ++  E  + E  Y  P  + ++    L  I  R  + R E+ +L GIV+
Sbjct: 170 REIEKLVENFEKLMLETWY--PRHRIERTKIALRRILGRSLITRRELAVLHGIVT 222


>gi|15669668|ref|NP_248481.1| hypothetical protein MJ_1476 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018437|sp|Q58871|Y1476_METJA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MJ1476
 gi|1592115|gb|AAB99481.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 230

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +ILV+P+   N+G +AR M NF   +LR+V  +    +E A   + +A  ++D+ + +
Sbjct: 5   ISVILVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIINNE-AYMMAVHAREILDNAKFY 63

Query: 75  SNLKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +   EAI DL F+ AT+ AR  +RN  +  + PKE A  + E      N+GI+FGRE  G
Sbjct: 64  NTFDEAIGDLDFVIATSGARGGDRNLKRVPITPKELADKILEV---KGNIGIVFGREDDG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NEEI   + ++S P +  +P +N+S AV ++++E     + +   ++  +   A+K +
Sbjct: 121 LRNEEIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYTKKVRNKFLDINMRE--ASKED 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
               +      +++     P  KK+        +  R  +  +E + L 
Sbjct: 179 KELLIRKFNEFIDKNEKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLM 226


>gi|325928099|ref|ZP_08189312.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
           91-118]
 gi|325541597|gb|EGD13126.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
           91-118]
          Length = 228

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 8/230 (3%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    +++L LV P      E A   SA A+ V+    +F+ L EA+AD   +   TAR 
Sbjct: 1   MKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSQAPIFATLGEAVADCTLVIGCTARA 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R      L P E A     +      V  +FGRER GLTN+E+ L +A +  P +P F S
Sbjct: 60  RRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208
           LN++ AV ++ +E     + + E           ++ PA+  +L      L  +L+E  +
Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAERAPAAAPGLRDGPASHAQLEGMFGQLGDTLDEIDF 179

Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
                  +  +  L  + +R E+  +EV L+RGI+S   + +  + +  N
Sbjct: 180 -HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLAKQAGN 228


>gi|91763130|ref|ZP_01265094.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717543|gb|EAS84194.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 237

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S      IL  PQL ENIG  ARA+ NFN  +L +V P+  +P++K  ++S  A  +I +
Sbjct: 2   SFSNISFILHQPQLSENIGACARALKNFNFKKLVIVKPKPIFPNDKILATSVGAKNLIIN 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +V   L+ A+  +  + AT+AR RN     +   +      ++I   + +  +FG E  
Sbjct: 62  AKVHETLESAVKKVDCVIATSARFRNKNIKHINLDD-----LKKIDFNKKIAFLFGSEAS 116

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN-TPATK 189
           GL+N EI+ +N  +  P NP F SLN+S +V+++         +   K  K +  T A+K
Sbjct: 117 GLSNNEISYANYTMQIPTNPDFKSLNLSHSVIIIAHTVASIINLKGVKYSKSKKVTLASK 176

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++ +  +     LEE+ +F+P+EK+  ML++L SIF + EL  +E  +L  + ++L K 
Sbjct: 177 KDIQAMTNLCIKKLEEKHFFKPLEKRPIMLENLRSIFSKMELSEKETRILSSVFASLSKK 236

Query: 250 S 250
            
Sbjct: 237 G 237


>gi|260596420|ref|YP_003208991.1| putative RNA methyltransferase [Cronobacter turicensis z3032]
 gi|260215597|emb|CBA27837.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Cronobacter
           turicensis z3032]
          Length = 239

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 13/248 (5%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M PY    ++  + P IILV P   EN+G  ARAM     T+LR+V          AR  
Sbjct: 1   MYPYHRITESLMRLP-IILVSPARPENVGAAARAMKTMGFTELRIVES-AAHLDPAARRV 58

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +  A  ++D+ + +  L  A+ D+ F  ATTAR+R  F     P++   +L E+      
Sbjct: 59  AHGAGDILDNTKRYDTLAAALEDVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPV 118

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             ++FGRE  GLTNEE+AL++ +   P+   +PSLN+ QAV++  ++       +  +N 
Sbjct: 119 TALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----TALMQNT 173

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
                 A + +L +    ++  L   G    ++    +   L        L + +  +L 
Sbjct: 174 PTAAPQADQQQLKALRLRIDALLTTLGVEDDLKMADWLQQRL------GLLEQRDTAMLH 227

Query: 241 GIVSTLDK 248
            ++  ++K
Sbjct: 228 RLLHDIEK 235


>gi|322834489|ref|YP_004214516.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
 gi|321169690|gb|ADW75389.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
          Length = 228

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 12/236 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM       LR+V+  +     +A   +  +  ++ +   FS 
Sbjct: 5   IILVSPARPENVGAAARAMKTMGFASLRIVDS-EAHLKPEAGWVAHGSQDILQNALHFST 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+ F  ATTAR+R  F     P+E  + L E+     +  ++FGRE  GLTNEE
Sbjct: 64  LAEALADIDFTVATTARSRAKFHYYCTPQELQVQLEEKSQWVNHAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++    + V+S K        A  G+L +  
Sbjct: 124 LELADVLTGVPMVADYPSLNLGQAVMVFCYQLSSLNQVTSVKP-----ENAEAGQLSALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             +   LE  G     E  +K+ D L+       L + +  +L  ++  ++K   Q
Sbjct: 179 ARVGRLLENVG----AEDDQKLSDWLHQRLG--LLQQRDAAMLHTLLHDIEKKLTQ 228


>gi|271502114|ref|YP_003335140.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345669|gb|ACZ78434.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech586]
          Length = 233

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM      +LR+V+ R       AR  +  +  ++D+V VF  
Sbjct: 5   IILVAPARPENVGAAARAMKTMGFGRLRIVDSR-AHLEPAARWVAHGSGDILDAVDVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F     P +   VL E+     +  ++FGRE  GLTNEE
Sbjct: 64  LADALADIDFTVATTARSRARFHYYCEPAQLLAVLQEKQQWISSAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++      V+  + +     PA  G+L +  
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQLASLMQVAVAEPM-----PAESGQLGALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
           +     L   G     ++ +K+ D L        L + +  +L  ++  ++K      + 
Sbjct: 179 ERFSRLLVRVG----AQQDEKLRDWLQQRLG--LLEQRDNAMLHRLLHDVEKALSAEDKG 232

Query: 257 N 257
            
Sbjct: 233 K 233


>gi|251788172|ref|YP_003002893.1| putative RNA methyltransferase [Dickeya zeae Ech1591]
 gi|247536793|gb|ACT05414.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
          Length = 233

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM      +LR+V+         AR  +  +  ++D   VF  
Sbjct: 5   IILVAPARAENVGAAARAMKTMGFGRLRIVDS-TAHLEPAARWVAHGSGDILDGAEVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F    +P +   VL E+    ++  ++FGRE  GLTNEE
Sbjct: 64  LTDALADVEFTVATTARSRARFHYYCSPAQLLGVLEEKRQWVKSAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++       S  +    + TPA  G+L +  
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQL-----ASLMQVAAAEPTPAESGQLSALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           D     L   G     ++ +K+ D L        L + +  +L  ++  ++K
Sbjct: 179 DRFARLLVRVG----AQQDEKLRDWLQQRLG--LLEQRDNAMLHTLLHDVEK 224


>gi|297570545|ref|YP_003691889.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926460|gb|ADH87270.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 304

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P+  ENIG  AR   N  +  L +V  R+    +  ++++  A  +ID +   + 
Sbjct: 19  IVLKNPKFEENIGSAARIAMNMGIPSLIVVGEREYQRDKMLKTATHKAAALIDRLERHAT 78

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EA+A    + AT+AR     + +  P   A+       +   V ++FG E  GLTNE+
Sbjct: 79  VAEALAPFGRVIATSARQGRQ-RGMCPPPRTAMQAALPYLAANRVALLFGPEDRGLTNED 137

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS-IVSSEKNVKEQNTPATKGELLSF 195
           + L + + + P    F SLN++QAV ++ +E    +    + +    +   AT  EL + 
Sbjct: 138 LYLCHQLTTIPTA-DFSSLNLAQAVAVLCYELHTAAHEAQTGRGPVVRPALATVHELEAM 196

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
             ++E  L++ G+ RP +     + ++ S+  R  L  +E  ++RG       +  Q + 
Sbjct: 197 YGHVEQVLQKVGFLRPEDS-SYWMKNIRSLLGRVGLRAKEARVVRGFCRQFLWYDAQRAT 255

Query: 256 RNNVLLQ 262
               +  
Sbjct: 256 AGAEVAP 262


>gi|86157540|ref|YP_464325.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774051|gb|ABC80888.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 269

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 24/267 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVI---- 68
             ++L  PQ  +N+G  AR M NF L++L +V P    G P      ++   D V+    
Sbjct: 6   IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAATARDDVLARAR 65

Query: 69  ----------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                     D   +  +L+ AI    ++  TT+R     +  L P+  A  L  R   G
Sbjct: 66  RMARKASDLLDGAEIHDDLRAAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSAQG 124

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + V ++FG ER GL++ E+ L  A+ + P    + S+N++QAV ++ +E    +      
Sbjct: 125 E-VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVISYEVARAAPPPGAA 183

Query: 179 NVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
             +       + PA    + +     +  L   GY  P +  + +L D   +  R +  +
Sbjct: 184 PAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQ 242

Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVL 260
            EV LL G + +L++  R + R +   
Sbjct: 243 REVELLLGALRSLERTLRLAPRGDGTA 269


>gi|254169084|ref|ZP_04875921.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|197621923|gb|EDY34501.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 243

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 17/234 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+ V+PQ   NIG +AR M NF    L LVNP +    E A   S +A  +I++  + +N
Sbjct: 13  IVFVEPQFTGNIGFLARTMANFGFKNLILVNPPE--LDEDAYRFSKHARYIIENAEILNN 70

Query: 77  LKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +E    L ++ AT+       +   +  L P+E A  +        N+GI+FGRE +GL
Sbjct: 71  FEELRRSLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFS---GNIGIVFGRENYGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            NEEI   +++I+ P +  +P +NI+ A  ++++E         EK  +E    A + E 
Sbjct: 128 YNEEIEKCDSLITIPTSEEYPIMNITHAAAIILYEIFM------EKREEEGMPLAEEFES 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               +     L    +  P  K+K        I  R  L + E   + G++  +
Sbjct: 182 NLLNERFSELLGLINF--PDHKRKNTEVMFRRIIGRAMLTKWEYHSMMGVMKRI 233


>gi|257076123|ref|ZP_05570484.1| rRNA methylase [Ferroplasma acidarmanus fer1]
          Length = 236

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 58/238 (24%), Positives = 114/238 (47%), Gaps = 8/238 (3%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + +  K   ++LV+P+   NIG VAR+M N  ++ LR+V         +A   S +   +
Sbjct: 1   MLDLDKIISVVLVEPKYQGNIGAVARSMANSGISDLRIVK---TPIETEAIYRSMHGRYI 57

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D+ ++F++LKEA++    I  T+  +++  K    P       +    +GQ V ++FGR
Sbjct: 58  LDNAKIFNSLKEAVSGFEIIAGTSDISKSGEKFRRVPTGPEEFWSTNGLTGQKVALVFGR 117

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E  GL  EE+ + N  +    NP +P  N+S AV ++++E ++ +   +     +     
Sbjct: 118 EDNGLNYEELGMCNFFLKIIGNPEYPVYNLSHAVAIILYEMIKANYSGNATITHD---LI 174

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            + ++ +    LE  L +  Y    ++   +++ L  I  R  +   E F + GI+  
Sbjct: 175 GRDKIDTLAGRLEELLAKIDY--NEQEIDTLMNMLNRIIARANITDSEFFKIMGIMRQ 230


>gi|256811397|ref|YP_003128766.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           fervens AG86]
 gi|256794597|gb|ACV25266.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           fervens AG86]
          Length = 227

 Score =  214 bits (547), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   N+G +AR M NF   +LR+V  +    +E A   + +A  ++D+ + +
Sbjct: 2   ISVVLVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIINNE-AYMMAVHAREILDNAKFY 60

Query: 75  SNLKEAIADLHFIYATT-AR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  EAI DL F+ AT+ AR  +RN  +  + PKE A  + E       +GI+FGRE  G
Sbjct: 61  NSFDEAIKDLDFVIATSGARGGDRNLKRVPITPKELADKILEV---KGKIGIVFGREDDG 117

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NE+I   + ++S P +  +P +N+S AV ++++E     + +   ++  +   A+K +
Sbjct: 118 LRNEDIDKCDLLVSIPTSEKYPIMNLSHAVAVILYEIYAKKVENKFLDINMRE--ASKED 175

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
               +      ++      P  KK+        +  R  +  +E + L 
Sbjct: 176 KELLIKKFNEFIDRNKKI-PEHKKELCKIIFKRLVNRAFISGKEAWTLM 223


>gi|188576184|ref|YP_001913113.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520636|gb|ACD58581.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 228

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 8/230 (3%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M    +++L LV P      E A   SA A+ V+    +F+ L EA+AD   +   TAR 
Sbjct: 1   MKTMGVSRLVLVAPERA-LDEDAYRRSAGAEDVLSEAPIFATLGEAVADCTLVIGCTARA 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R      L P E A     +      V  +FGRER GLTN+E+ L +A +  P +P F S
Sbjct: 60  RRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSS 119

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKE------QNTPATKGELLSFLDYLEISLEERGY 208
           LN++ AV ++ +E     + + E           ++ PA+  +L      L  +L+E  +
Sbjct: 120 LNLAAAVQVLAYEVRLAQLAAGEAEPAPAAATGLRDGPASHAQLEGMFGQLGDTLDEIDF 179

Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNN 258
                  +  +  L  + +R E+  +EV L+RGI+S   + +  + +  N
Sbjct: 180 -HKGRAPESAMRKLRRLLLRAEMTEQEVRLIRGILSDAQRMAMLARQAEN 228


>gi|261338997|ref|ZP_05966855.1| hypothetical protein ENTCAN_05202 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318828|gb|EFC57766.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 228

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T+LR+V           R  +  +  ++D++  +  
Sbjct: 5   IVLVQPARAENIGAAARAMKTMGFTELRIVGS-VAHLEPATRWVAHGSGDIVDNITTYDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P+E   +L E+     +  ++FGRE  GLTN+E
Sbjct: 64  LADALHDISFTVATTARSRAKFHYYATPEELVPLLREKSQWLTHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLS 194
           +AL++ +   P+   +PSLN+ QAV++  ++   +            E    A +  + S
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLASLMQITPPPVSATDENQLTALRARVES 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            + +L ++ ++           KM D L     R  L + +  +L  ++  ++K
Sbjct: 184 LISHLGVADDQ-----------KMTDWLQQRLGR--LEQRDTAMLHRLLHDIEK 224


>gi|293392940|ref|ZP_06637257.1| RNA methyltransferase [Serratia odorifera DSM 4582]
 gi|291424474|gb|EFE97686.1| RNA methyltransferase [Serratia odorifera DSM 4582]
          Length = 225

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     + LR+V+  D      AR  +  A  ++D+V+ F  
Sbjct: 5   IVLVAPARPENVGAAARAMKTMGFSSLRIVDS-DAHLQPAARWVAHGAGEILDAVQTFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+AD+ F  ATTAR+R  F     P+     L+ER        ++FGRE  GLTNEE
Sbjct: 64  LEQALADVDFTVATTARSRARFHYYCTPQALLEQLSERSQWMSQAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++      V++  +       A  G+L +  
Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSALMSVAAPPSPT-----ADGGQLQALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              +  L+        + +  +   L        L + +  +L  ++  ++K
Sbjct: 179 QRADRLLQNLEVGDDQKLRDWLHQRL------GSLPQRDTVMLHTLLHDIEK 224


>gi|270263887|ref|ZP_06192155.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
 gi|270042080|gb|EFA15176.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
          Length = 228

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     T LR+V+  +      AR  +  A  ++D V+ F+ 
Sbjct: 5   IVLVAPARPENVGAAARAMKTMGFTSLRIVDS-EAHLQPAARWVAHGAGEILDGVQTFAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F     P++    L ER        ++FGRE  GLTNEE
Sbjct: 64  LSQALADVDFTVATTARSRARFHYYCTPQQLLGQLGERSQWVNQAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++  E   VS+      Q T A +G+L +  
Sbjct: 124 LELADLLTGVPMQADYPSLNLGQAVMVYCYQLSELMNVSAP-----QETMANEGQLRALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              E  L   G     + +  +   L  +  R      +  +L  ++  ++K
Sbjct: 179 QRAEGLLGALGVSDDQKLRDWLHQRLGVLPQR------DTAMLHRLLHDIEK 224


>gi|26111729|gb|AAN83910.1|AE016772_88 Hypothetical tRNA/rRNA methyltransferase lasT [Escherichia coli
           CFT073]
          Length = 235

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF
Sbjct: 10  ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVF 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 69  KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 184 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 231


>gi|327396446|dbj|BAK13868.1| tRNA/rRNA methyltransferase LasT [Pantoea ananatis AJ13355]
          Length = 234

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV P   ENIG  ARAM      ++R+V   D W    AR  +  A  ++D ++ F  L
Sbjct: 8   ILVSPARAENIGAAARAMKTMGFNEMRIVAS-DAWQDPAARRLAHGAGDILDRIKTFDTL 66

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD+ F  ATTAR+R  F+    P++    L E+     ++ ++FGRE  GLTNEE+
Sbjct: 67  AEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEEL 126

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              + +   P+   +PSLN+ QAV++  ++       +  +        A   +L +   
Sbjct: 127 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQL-----SALNQVAAPVAPAADGQQLHALRQ 181

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E  L         +    +   +        L + +  +L  ++  ++K
Sbjct: 182 RFEQLLSRLEVSDDNKMADWINQRI------GLLEQRDSAMLHRLLHDVEK 226


>gi|291616207|ref|YP_003518949.1| LasT [Pantoea ananatis LMG 20103]
 gi|291151237|gb|ADD75821.1| LasT [Pantoea ananatis LMG 20103]
          Length = 247

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 12/231 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV P   ENIG  ARAM      ++R+V   D W    AR  +  A  ++D ++ F  L
Sbjct: 21  ILVSPARAENIGAAARAMKTMGFNEMRIVAS-DAWQDPAARRVAHGAGDILDRIKTFDTL 79

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+AD+ F  ATTAR+R  F+    P++    L E+     ++ ++FGRE  GLTNEE+
Sbjct: 80  AEALADIDFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEEL 139

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              + +   P+   +PSLN+ QAV++  ++       +  +        A   +L +   
Sbjct: 140 EQVDLLTGIPMANDYPSLNLGQAVMVYCYQL-----SALNQVAAPVAPAADGQQLHALRQ 194

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             E  L         +    +   +        L + +  +L  ++  ++K
Sbjct: 195 RFEQLLSRLEVSDDNKMADWINQRI------GLLEQRDSAMLHRLLHDVEK 239


>gi|242238023|ref|YP_002986204.1| RNA methyltransferase [Dickeya dadantii Ech703]
 gi|242130080|gb|ACS84382.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
          Length = 232

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 12/233 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM       LR+V+ +       AR  +  +  +++  + FS+
Sbjct: 5   IILVAPARAENVGAAARAMKTMGFECLRIVDSQ-AHREPAARWVAHGSSDILERAQTFSS 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F    +P++   V+ E+    ++V ++FGRE  GLTNEE
Sbjct: 64  LADALVDVDFTVATTARSRARFHYYSSPEQVLGVIREKQQWVKSVALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++      V++          A  G+L +  
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQLSSLMQVTAG-----AAPAADSGQLSALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             +E  L        VE+ +K+ D L        L + +  +L  ++  ++K 
Sbjct: 179 QRVERLLGRID----VERDEKLHDWLRQRLG--LLEQRDTAMLHRLLHDVEKA 225


>gi|169236111|ref|YP_001689311.1| hypothetical protein OE2923F [Halobacterium salinarum R1]
 gi|167727177|emb|CAP13963.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 241

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 109/238 (45%), Gaps = 6/238 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDS 70
              P + +VD +   N+G +ARAM NF   +L LV+P       +A   + +A   ++  
Sbjct: 1   MSKPAVAIVDAETAGNVGTIARAMKNFGFEELLLVDPPYLGRDSEAYGFAGHAREDILPE 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRER 129
            R   +    +++ H +  T   N +       P      L + +   +    ++FGRER
Sbjct: 61  AREL-SFDALVSEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTALVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLTN+E+A  + + S P +  +P +N+ Q+  + ++E  + ++  ++    E++  A +
Sbjct: 120 VGLTNDELARIDEVGSIPASDDYPVMNLGQSATVALYELRDLAMSETQLPDVERHR-ADE 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            E+  F ++    L+   Y  P EK+ K +  L  +  R      E+  + G++   +
Sbjct: 179 AEIEQFYEHASEFLDAVDY--PAEKQAKTMRMLRRMLGRTHPTGREINTVHGLLRRAE 234


>gi|254456096|ref|ZP_05069525.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083098|gb|EDZ60524.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 237

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 135/242 (55%), Gaps = 8/242 (3%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S+     IL  PQL ENIG  AR M NFN  +L +++P+  +P++K  ++S  A  +I  
Sbjct: 2   SSTNITFILHKPQLSENIGACARGMKNFNFQKLIVIDPKPIFPNDKILATSVGAKNIISK 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +VF NL+ A+ ++ ++ AT+AR RN        K   +   ++I   + +  +FG E  
Sbjct: 62  SKVFDNLEPALKNIDYVIATSARFRNK-----NIKHIQLEDLKKIDFTKKIAFLFGSEAS 116

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN--TPAT 188
           GL+N E++ +N  +  P NP F SLN+S +++++  + + + I S   N K+      A+
Sbjct: 117 GLSNNEVSYANYTLQIPTNPDFKSLNLSHSLIIIA-QYVSSIIKSKTSNFKKSKKVKTAS 175

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           K E+ +  +    +L+E  +F+P EKK  ML++L +IF + EL  +E  +L  + ++L K
Sbjct: 176 KKEIHAMTNLCIKNLDEINFFKPKEKKPIMLENLRNIFYKMELSAKETRILASVFASLGK 235

Query: 249 FS 250
             
Sbjct: 236 KR 237


>gi|170768660|ref|ZP_02903113.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
 gi|170122764|gb|EDS91695.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
          Length = 228

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +  +     R  +  +  +ID++ VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AYLEPATRWVAHGSGDIIDNIAVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S L+EA+ D+ F  ATTAR+R  +     P E   +L E+     ++ ++FGRE  GLTN
Sbjct: 62  STLEEALQDVDFTVATTARSRAKYHYYATPVELVPLLAEKSAWMNHIALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +  A + +L +
Sbjct: 122 EELALADILTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDASADQYQLRA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L             K++D +     R  L + +  +L  ++  ++K
Sbjct: 177 LRERVMSLLTTLAVADDT----KLVDWIQQRIGR--LEQRDTAMLHRLLHDIEK 224


>gi|91214121|ref|YP_544107.1| putative RNA methyltransferase [Escherichia coli UTI89]
 gi|237704139|ref|ZP_04534620.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91075695|gb|ABE10576.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           UTI89]
 gi|226902051|gb|EEH88310.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 235

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF
Sbjct: 10  ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVF 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 69  KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 184 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 231


>gi|191173157|ref|ZP_03034689.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|218692792|ref|YP_002401004.1| putative RNA methyltransferase [Escherichia coli ED1a]
 gi|227885105|ref|ZP_04002910.1| RNA methyltransferase [Escherichia coli 83972]
 gi|229106359|ref|NP_757336.2| putative RNA methyltransferase [Escherichia coli CFT073]
 gi|300980881|ref|ZP_07175230.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|300983987|ref|ZP_07176838.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|301048375|ref|ZP_07195404.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|190906542|gb|EDV66149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|218430356|emb|CAR11226.1| rRNA methyltransferase [Escherichia coli ED1a]
 gi|227837934|gb|EEJ48400.1| RNA methyltransferase [Escherichia coli 83972]
 gi|300299792|gb|EFJ56177.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|300306821|gb|EFJ61341.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|300409123|gb|EFJ92661.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|307556637|gb|ADN49412.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|315293342|gb|EFU52694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           153-1]
 gi|320195357|gb|EFW69985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           WV_060327]
 gi|324012374|gb|EGB81593.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           60-1]
          Length = 228

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|301024668|ref|ZP_07188315.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|299880311|gb|EFI88522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
          Length = 235

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     + LR+V+ +        R  +  +  +ID+++VF
Sbjct: 10  ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 69  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +  A + +L +
Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDATADQHQLQA 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 184 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 231


>gi|296101179|ref|YP_003611325.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055638|gb|ADF60376.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 228

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+         AR  +  +  ++D++  +  
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDS-VAHLEPAARWVAHGSGDILDNITTYDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P E   +L+E+    +   ++FGRE  GLTN+E
Sbjct: 64  LADALHDISFTVATTARSRAKFHYYATPAELVPMLSEKSQWLEKAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++      +     V        + +L +  
Sbjct: 124 LALADVLTGAPMVADYPSLNLGQAVMVYCYQLASLIQIPQPPAVGT-----DENQLAALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++  L + G     +    +   L        L + +  +L  ++  ++K
Sbjct: 179 TRVDNLLMQLGVADDQKMADWLQQRL------GRLEQRDTAMLHRLLHDIEK 224


>gi|33861612|ref|NP_893173.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634189|emb|CAE19515.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 247

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 125/249 (50%), Gaps = 2/249 (0%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++       ++LV+P    N+G +AR   NF++ +LR+V+P+    S +A+  +      
Sbjct: 1   MKKKRLNLNVVLVEPNGPLNVGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGYRY 60

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ID+ ++F+++++AI D   + AT  R   +        E             N+GI+FGR
Sbjct: 61  IDNCKIFNSIEQAIFDCDLVIATFGRIDLSNDIECESPEDISKWISSFVEINNLGILFGR 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E  GL+N E+  ++ I++   +  +PSLN+S AV ++++E  ++S  + +K+++  +  +
Sbjct: 121 EDRGLSNNELLFAHKILNIKTSQNYPSLNLSHAVSIILYELNKSSKNNDKKDLQVLDLAS 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
           +K    SF + +E  L + GY        K+      +    +    ++ +LRGIV  ++
Sbjct: 181 SKQIYESFKE-IEEMLIKTGYLLEHTANSKISKFKKFLLK-AKTSSHDINVLRGIVHQIN 238

Query: 248 KFSRQSSRR 256
            F   S  +
Sbjct: 239 WFLNNSKGK 247


>gi|323171419|gb|EFZ57066.1| hypothetical protein ECLT68_4062 [Escherichia coli LT-68]
          Length = 268

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 12/239 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQS 253
             + +   L        ++    +   L        L + +  +L  ++  ++K S   
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEKISPNK 229


>gi|331681388|ref|ZP_08382025.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           H299]
 gi|331081609|gb|EGI52770.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           H299]
          Length = 228

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAARWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +   + L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMVLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|117626762|ref|YP_860085.1| putative RNA methyltransferase [Escherichia coli APEC O1]
 gi|218561635|ref|YP_002394548.1| RNA methyltransferase [Escherichia coli S88]
 gi|331661038|ref|ZP_08361970.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           TA206]
 gi|115515886|gb|ABJ03961.1| putative rRNA methyltransferase [Escherichia coli APEC O1]
 gi|218368404|emb|CAR06224.1| rRNA methyltransferase [Escherichia coli S88]
 gi|222036146|emb|CAP78891.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           LF82]
 gi|294490761|gb|ADE89517.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           IHE3034]
 gi|307629574|gb|ADN73878.1| putative RNA methyltransferase [Escherichia coli UM146]
 gi|312949034|gb|ADR29861.1| putative RNA methyltransferase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315284984|gb|EFU44429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           110-3]
 gi|315298366|gb|EFU57621.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           16-3]
 gi|323950509|gb|EGB46387.1| RNA methyltransferase [Escherichia coli H252]
 gi|331052080|gb|EGI24119.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           TA206]
          Length = 228

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|323964754|gb|EGB60222.1| RNA methyltransferase [Escherichia coli M863]
 gi|323975837|gb|EGB70933.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|327250029|gb|EGE61759.1| hypothetical protein ECSTEC7V_5191 [Escherichia coli STEC_7v]
          Length = 228

 Score =  211 bits (539), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L         +    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMSLLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|323190317|gb|EFZ75593.1| hypothetical protein ECRN5871_1472 [Escherichia coli RN587/1]
          Length = 228

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     + LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|303244844|ref|ZP_07331172.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
           okinawensis IH1]
 gi|302484794|gb|EFL47730.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
           okinawensis IH1]
          Length = 231

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 11/229 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            ++ILV+P+   N+G +AR M NF + +LR+V  +D   +++A   + +A  ++++ + +
Sbjct: 3   VIVILVNPKYSGNVGAIARNMMNFGVNELRIVGSKD-ILNDEAYIRAVHAKEILNNAKFY 61

Query: 75  SNLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            NL +A  D+ FI  T+     +RN  +  + P E A     +I  G  +GI+FGRE  G
Sbjct: 62  DNLNDATQDIDFIVGTSGAVSGDRNLKRVPITPHELAEK--YKIVDG-TMGIVFGREDDG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+N+E+ L +  +S P +  +P +N+S AV ++++E   +S+         +   A+K E
Sbjct: 119 LSNKELELCDLFVSIPTSEKYPIMNLSHAVSIILYELYVSSLNKPYNVNMRE---ASKLE 175

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
               L+     +++  Y  P  +K+        I  R  +  +E   L 
Sbjct: 176 KDVLLNIFNEFVDKNEYI-PEYRKELCKTIFKRIISRAFISGKEANTLM 223


>gi|333009340|gb|EGK28796.1| hypothetical protein SFK218_0239 [Shigella flexneri K-218]
          Length = 228

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTALAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|253774967|ref|YP_003037798.1| RNA methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164328|ref|YP_003047438.1| putative RNA methyltransferase [Escherichia coli B str. REL606]
 gi|300930632|ref|ZP_07146021.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|253326011|gb|ACT30613.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976231|gb|ACT41902.1| predicted rRNA methyltransferase [Escherichia coli B str. REL606]
 gi|253980389|gb|ACT46059.1| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
 gi|300461483|gb|EFK24976.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|313848845|emb|CAQ34761.2| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
          Length = 228

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|281181548|dbj|BAI57878.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 228

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|307313663|ref|ZP_07593282.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|306906486|gb|EFN36999.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|315063704|gb|ADT78031.1| predicted rRNA methyltransferase [Escherichia coli W]
 gi|323380214|gb|ADX52482.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
          Length = 228

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVGWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|291285838|ref|YP_003502656.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O55:H7 str. CB9615]
 gi|293417877|ref|ZP_06660499.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|209748734|gb|ACI72674.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|290765711|gb|ADD59672.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O55:H7 str. CB9615]
 gi|291430595|gb|EFF03593.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|320638624|gb|EFX08329.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320649071|gb|EFX17653.1| putative RNA methyltransferase [Escherichia coli O157:H- str. H
           2687]
 gi|320660301|gb|EFX27805.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665397|gb|EFX32481.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 228

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|317493377|ref|ZP_07951799.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918770|gb|EFV40107.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 228

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 12/236 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     + LR+V+ +  +     R  +  +  ++D+ + F+ 
Sbjct: 5   IVLVAPARPENIGAAARAMKTMGFSSLRIVDSQ-AYLEPATRWVAHGSGDILDNAQHFNT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD+ F  ATTAR+R  +    +P+E   +L E+     +  I+FGRE  GL+NEE
Sbjct: 64  LEAALADVDFTVATTARSRARYHYYCSPQELTGILQEKQSWTASCAIVFGREESGLSNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++       S  +N  E    A + +L++  
Sbjct: 124 LALADILTGVPMVADYPSLNLGQAVMVFCYQL-----SSLIQNRFETQQLAEQNQLVALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
             +   L         +    +   L  +  R      +  +L  ++  ++K  ++
Sbjct: 179 HRVHRLLSALNVEDDQKLSDWLDQRLGLLAQR------DTSMLHTLIHDIEKALKK 228


>gi|209748728|gb|ACI72671.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|320643913|gb|EFX13033.1| putative RNA methyltransferase [Escherichia coli O157:H- str.
           493-89]
          Length = 228

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-VHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|331650890|ref|ZP_08351918.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
 gi|331051344|gb|EGI23393.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
          Length = 228

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     + LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +  A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDATADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|261349415|ref|ZP_05974832.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
           smithii DSM 2374]
 gi|288861777|gb|EFC94075.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
           smithii DSM 2374]
          Length = 301

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 12/249 (4%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L N      I+ V+ +   NIG +AR M NF L  L L+NP    P  +A   + +   
Sbjct: 62  ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 119

Query: 67  VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++D+ +++  L E      + F  A+T     ++     P      L + I +     I+
Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVR-PENLGKNINTNNKTAIL 178

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GLTNEEI   +  +S P +P +P LNIS A  ++ +E  +N      + ++E  
Sbjct: 179 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 238

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
               +  L    D L   L+      P  KKK  L    +I  R  +   E   L+GI+ 
Sbjct: 239 AIEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 292

Query: 245 TLD-KFSRQ 252
            L  K  +Q
Sbjct: 293 RLKMKMGKQ 301


>gi|222446047|ref|ZP_03608562.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435612|gb|EEE42777.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
           DSM 2375]
          Length = 272

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 12/249 (4%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L N      I+ V+ +   NIG +AR M NF L  L L+NP    P  +A   + +   
Sbjct: 33  ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 90

Query: 67  VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++D+ +++  L E      + F  A+T     ++     P      L + I +     I+
Sbjct: 91  IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVR-PENLGKNINTNNKTAIL 149

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GLTNEEI   +  +S P +P +P LNIS A  ++ +E  +N      + ++E  
Sbjct: 150 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 209

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
               +  L    D L   L+      P  KKK  L    +I  R  +   E   L+GI+ 
Sbjct: 210 AIEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 263

Query: 245 TLD-KFSRQ 252
            L  K  +Q
Sbjct: 264 RLKMKMGKQ 272


>gi|218708087|ref|YP_002415606.1| putative RNA methyltransferase [Escherichia coli UMN026]
 gi|293403074|ref|ZP_06647171.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|298378601|ref|ZP_06988485.1| RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300896760|ref|ZP_07115266.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|301024920|ref|ZP_07188532.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|218435184|emb|CAR16142.1| rRNA methyltransferase [Escherichia coli UMN026]
 gi|291429989|gb|EFF03003.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|298280935|gb|EFI22436.1| RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300359416|gb|EFJ75286.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300396295|gb|EFJ79833.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
          Length = 228

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A K +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADKHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|148642454|ref|YP_001272967.1| rRNA methylase [Methanobrevibacter smithii ATCC 35061]
 gi|148551471|gb|ABQ86599.1| rRNA methylase, SpoU family [Methanobrevibacter smithii ATCC 35061]
          Length = 301

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 12/249 (4%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L N      I+ V+ +   NIG +AR M NF L  L L+NP    P  +A   + +   
Sbjct: 62  ELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVLINPPTLTP--EAFYQATHGKY 119

Query: 67  VIDSVRVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++D+ +++  L E      + F  A+T     ++     P      L + I +     I+
Sbjct: 120 IVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVR-PENLGKNINTNNKTAIL 178

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GLTNEEI   +  +S P +P +P LNIS A  ++ +E  +N      + ++E  
Sbjct: 179 FGREGNGLTNEEIEDCDICVSIPTDPTYPILNISHAAAIIFYELFKNMHEYPVEGLEEST 238

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
               +  L    D L   L+      P  KKK  L    +I  R  +   E   L+GI+ 
Sbjct: 239 AIEKEYVLKDMYD-LIDGLD-----IPEHKKKNGLKSFKNIINRAYITGREAHTLKGILR 292

Query: 245 TLD-KFSRQ 252
            L  K  +Q
Sbjct: 293 RLKMKMGKQ 301


>gi|56480615|ref|NP_710140.2| putative RNA methyltransferase [Shigella flexneri 2a str. 301]
 gi|191167401|ref|ZP_03029216.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|218556938|ref|YP_002389852.1| putative RNA methyltransferase [Escherichia coli IAI1]
 gi|300824445|ref|ZP_07104558.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|309795680|ref|ZP_07690096.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|331666231|ref|ZP_08367112.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA271]
 gi|331680570|ref|ZP_08381229.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
 gi|56384166|gb|AAN45847.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|190902541|gb|EDV62275.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|218363707|emb|CAR01367.1| rRNA methyltransferase [Escherichia coli IAI1]
 gi|281603740|gb|ADA76724.1| putative rRNA methylase [Shigella flexneri 2002017]
 gi|300523087|gb|EFK44156.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|308120804|gb|EFO58066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|313646239|gb|EFS10701.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella flexneri
           2a str. 2457T]
 gi|331066442|gb|EGI38319.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA271]
 gi|331072033|gb|EGI43369.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
 gi|332749167|gb|EGJ79590.1| hypothetical protein SFK671_5214 [Shigella flexneri K-671]
 gi|332749663|gb|EGJ80079.1| hypothetical protein SF274771_5233 [Shigella flexneri 2747-71]
 gi|332768790|gb|EGJ98969.1| RNA methyltransferase, TrmH , group 1 family protein [Shigella
           flexneri 2930-71]
          Length = 228

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|16132220|ref|NP_418820.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89111111|ref|AP_004891.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083789|ref|YP_001733109.1| rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|218703151|ref|YP_002410780.1| putative RNA methyltransferase [Escherichia coli IAI39]
 gi|238903490|ref|YP_002929286.1| putative rRNA methyltransferase [Escherichia coli BW2952]
 gi|301330240|ref|ZP_07222898.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|312970097|ref|ZP_07784279.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           1827-70]
 gi|729917|sp|P37005|LAST_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
 gi|537243|gb|AAA97299.1| ORF_o228b [Escherichia coli str. K-12 substr. MG1655]
 gi|1790865|gb|AAC77356.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85677142|dbj|BAE78392.1| predicted rRNA methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|169891624|gb|ACB05331.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|218373137|emb|CAR21031.1| rRNA methyltransferase [Escherichia coli IAI39]
 gi|238863085|gb|ACR65083.1| predicted rRNA methyltransferase [Escherichia coli BW2952]
 gi|260450786|gb|ACX41208.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
 gi|300843746|gb|EFK71506.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|310337595|gb|EFQ02706.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           1827-70]
 gi|315138957|dbj|BAJ46116.1| putative RNA methyltransferase [Escherichia coli DH1]
          Length = 228

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     + LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +  A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDATADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|295098529|emb|CBK87619.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 228

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T LR+V+         AR  +  +  ++D++  ++ 
Sbjct: 5   IVLVAPARAENIGAAARAMKTMGFTDLRIVDS-TAHLEPAARWVAHGSGDILDNITTYAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P E   +L E+    +   ++FGRE  GLTNEE
Sbjct: 64  LADALHDISFTVATTARSRAKFHYYATPAELVPMLEEKSLWLEKAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++ +   P+   +PSLN+ QAV++  ++      +S         T + + +L +  
Sbjct: 124 LELADVLTGAPMVADYPSLNLGQAVMVYCYQLASLIQISQPPV-----TVSDENQLAALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              +  LE+ G        +KM+D L     R  L + +  +L  ++  ++K
Sbjct: 179 VRADKLLEQLGVADD----QKMVDWLQQRLGR--LEQRDTAMLHRLLHDIEK 224


>gi|293408092|ref|ZP_06651932.1| RNA methyltransferase [Escherichia coli B354]
 gi|291472343|gb|EFF14825.1| RNA methyltransferase [Escherichia coli B354]
          Length = 228

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L         +    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|170683598|ref|YP_001746860.1| putative RNA methyltransferase [Escherichia coli SMS-3-5]
 gi|170521316|gb|ACB19494.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           SMS-3-5]
          Length = 228

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     + LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSSDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +  A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDATADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|300905395|ref|ZP_07123164.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300947474|ref|ZP_07161658.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300955633|ref|ZP_07167988.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|301303509|ref|ZP_07209632.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|300317470|gb|EFJ67254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|300402764|gb|EFJ86302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300452908|gb|EFK16528.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300841236|gb|EFK68996.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|315255733|gb|EFU35701.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           85-1]
          Length = 228

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|74314837|ref|YP_313256.1| putative RNA methyltransferase [Shigella sonnei Ss046]
 gi|194434185|ref|ZP_03066453.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|256025322|ref|ZP_05439187.1| putative RNA methyltransferase [Escherichia sp. 4_1_40B]
 gi|301646924|ref|ZP_07246769.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|307136603|ref|ZP_07495959.1| putative RNA methyltransferase [Escherichia coli H736]
 gi|331640448|ref|ZP_08341596.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
 gi|73858314|gb|AAZ91021.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|194417622|gb|EDX33723.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|301074912|gb|EFK89718.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|323166212|gb|EFZ51990.1| hypothetical protein SS53G_3575 [Shigella sonnei 53G]
 gi|331040194|gb|EGI12401.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
 gi|332097902|gb|EGJ02875.1| hypothetical protein SD15574_0046 [Shigella dysenteriae 155-74]
          Length = 228

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  VID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDVIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|303326981|ref|ZP_07357423.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
 gi|302862969|gb|EFL85901.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
          Length = 247

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 9/243 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCVIDS 70
             G  I+LV  +  ENIGM ARA  N     +RLV+P + W  EKA   +      ++D 
Sbjct: 3   LDGVQIVLVKTRFPENIGMAARACANMGCPAIRLVDP-ERWDREKAGPLATPKGQSLLDG 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           VRV  +L  A+A+   +  TTAR     +++LAP +AA  +   +   + V ++FG E  
Sbjct: 62  VRVSPDLAVAVAESSLVLGTTARTGGWRQALLAPGQAAREVAAALARDEKVSLVFGPEDR 121

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM------ENSIVSSEKNVKEQN 184
           GL NEEI     +++ P +    SLN++QAVLLM++EC            + +       
Sbjct: 122 GLNNEEITHCQRLVTIPTDAAASSLNLAQAVLLMLYECANAVRAVRAFPDAEKAGTSGGG 181

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
              T  E    +D L+  L    Y         ++     +F R  L R E   L G+  
Sbjct: 182 RAVTAEEQERLMDALKTMLLGLDYLHGDNPDYFLMPW-RRMFSRAGLRRHEYDALMGLCR 240

Query: 245 TLD 247
            + 
Sbjct: 241 QVR 243


>gi|331645102|ref|ZP_08346213.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           M605]
 gi|330909848|gb|EGH38358.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli AA86]
 gi|331045859|gb|EGI17978.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           M605]
          Length = 228

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  VID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDVIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|331661363|ref|ZP_08362287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA143]
 gi|331061278|gb|EGI33241.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA143]
          Length = 228

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTMADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L         +    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|300939394|ref|ZP_07154060.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300455722|gb|EFK19215.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
          Length = 228

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     + LR+V+ +        R  +  +  VID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDVIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L   +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEHRDTAMLHRLLHDIEK 224


>gi|332281315|ref|ZP_08393728.1| RNA methyltransferase [Shigella sp. D9]
 gi|332103667|gb|EGJ07013.1| RNA methyltransferase [Shigella sp. D9]
          Length = 235

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 10  ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 69  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 129 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 184 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 231


>gi|215489715|ref|YP_002332146.1| putative RNA methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966121|ref|ZP_07780347.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           2362-75]
 gi|215267787|emb|CAS12251.1| predicted rRNA methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289364|gb|EFR17258.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           2362-75]
          Length = 228

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +   + L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMVLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|297519997|ref|ZP_06938383.1| putative RNA methyltransferase [Escherichia coli OP50]
          Length = 228

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        +    K++D L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDI----KLVDWLQQCLG--LLEQRDTAMLHRLLHDIEK 224


>gi|15834615|ref|NP_313388.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|168750958|ref|ZP_02775980.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756823|ref|ZP_02781830.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762757|ref|ZP_02787764.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766687|ref|ZP_02791694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776617|ref|ZP_02801624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781695|ref|ZP_02806702.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785048|ref|ZP_02810055.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|168797978|ref|ZP_02822985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|195937674|ref|ZP_03083056.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807856|ref|ZP_03250193.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812204|ref|ZP_03253533.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820258|ref|ZP_03260578.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397370|ref|YP_002273923.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325430|ref|ZP_03441514.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796399|ref|YP_003081236.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226760|ref|ZP_05941041.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255164|ref|ZP_05947697.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|13364839|dbj|BAB38784.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768001|gb|EDU31845.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014896|gb|EDU53018.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000755|gb|EDU69741.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356035|gb|EDU74454.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364086|gb|EDU82505.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366929|gb|EDU85345.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189375093|gb|EDU93509.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|189379506|gb|EDU97922.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|208727657|gb|EDZ77258.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733481|gb|EDZ82168.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740381|gb|EDZ88063.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158770|gb|ACI36203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748730|gb|ACI72672.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|209748732|gb|ACI72673.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|209748736|gb|ACI72675.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|217321651|gb|EEC30075.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595799|gb|ACT75160.1| RNA methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|320190480|gb|EFW65130.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC1212]
 gi|326345283|gb|EGD69026.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. 1125]
 gi|326346863|gb|EGD70597.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. 1044]
          Length = 228

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++          +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----AILIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|194439268|ref|ZP_03071347.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|194421750|gb|EDX37758.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|315616225|gb|EFU96844.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           3431]
 gi|323970852|gb|EGB66104.1| RNA methyltransferase [Escherichia coli TA007]
          Length = 228

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     + LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++          +   + +  A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----AILIQQPAKSDATADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMRLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|13541410|ref|NP_111098.1| rRNA methylase [Thermoplasma volcanium GSS1]
 gi|14324793|dbj|BAB59720.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 250

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 10/234 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P+   NIG VAR+M N  L++L +V  R   P ++A + S     ++++  +  +
Sbjct: 13  VVLVQPKYQGNIGAVARSMKNSGLSKLIIVGNR---PDDEAFARSMGGRQILENAEIVDS 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+E +     +  T++   +N K     P +      +       V ++FGRE  GL NE
Sbjct: 70  LEEIVHRFTIVAGTSSTASSNLKRFRRLPVDPETFWKQMESQTGKVALVFGREDDGLRNE 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L N  I  P NP +P  N+S AV ++++    + +     ++ +  +   + E+L  
Sbjct: 130 ELDLCNYFIYIPGNPDYPVYNLSHAVAIVLYVMYRSYV---PSDMIQHESIKPEHEVLLM 186

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            + L+I    R    P  K +     L  I  R  +   E F L GIV  + + 
Sbjct: 187 SNILDIMKLSR---YPAHKMRNAEVMLRRIIGRSMITEREYFKLMGIVRRIKEA 237


>gi|257453749|ref|ZP_05619030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
           SK60]
 gi|257448841|gb|EEV23803.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
           SK60]
          Length = 278

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 25/265 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L     G  I++V+  L  NIG  ARAM    LTQL +V P+     E A + +A A  
Sbjct: 15  SLAAFLAGIRIVMVNTTLPANIGSAARAMHTMGLTQLTVVAPK-LPIDEDAYAHAAGAKA 73

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-----------ERI 115
           ++D+V +   L++A+ D H++ AT++R R+  + VL+P++AA ++            +  
Sbjct: 74  ILDAVTICDTLEQALQDCHWVIATSSRQRHIPRPVLSPRQAAELMVTNFHNLGDLMTDAA 133

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV---WECMENS 172
                + I+FGRE  GLTNEE+ L++  I  P N  +  LN++ AV ++    +E  E +
Sbjct: 134 HRNWQLAIVFGREDRGLTNEELQLADYHIQIPANAEYGVLNVAAAVQVIASVFYETAELA 193

Query: 173 IVSSEKNVKE---------QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
           + +     K             P +  + L   + L   LE    + P +  K M   + 
Sbjct: 194 LTAKTAAEKSIDLTFRQQWDEPPISNEQRLQLENRLLALLENLEIYNPAQS-KVMPQRIN 252

Query: 224 SIFIRPELMREEVFLLRGIVSTLDK 248
            +  R +L  +E  LL+  ++ L K
Sbjct: 253 RLLSRIQLDIKEYQLLQATIAKLLK 277


>gi|306815400|ref|ZP_07449549.1| putative RNA methyltransferase [Escherichia coli NC101]
 gi|305851062|gb|EFM51517.1| putative RNA methyltransferase [Escherichia coli NC101]
 gi|324007734|gb|EGB76953.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           57-2]
          Length = 228

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  KTLAESLHDVDFTVATTARSRAKYHYYAMPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|323939780|gb|EGB35982.1| RNA methyltransferase [Escherichia coli E482]
          Length = 228

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L         +    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|257388813|ref|YP_003178586.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
           mukohataei DSM 12286]
 gi|257171120|gb|ACV48879.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
           mukohataei DSM 12286]
          Length = 241

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 6/236 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDS 70
                + +VD +   N+G +AR+M NF L +L L++P D     +A   +  A   ++  
Sbjct: 1   MSSVAVAVVDAETPGNVGTIARSMKNFGLDELLLIDPPDLPRESEAYGYAGQAREDILPE 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129
            R   +  E + + H +  T   N +  K V  P      L + +     +  I+FGRER
Sbjct: 61  AREI-SFDELVTEYHTVGCTAITNEDGSKHVRYPFVTPRDLADDLAGLDADTAIVFGRER 119

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GLTN+EI   + + S P +  +P LN+ QA  ++++E    ++  ++      +  A +
Sbjct: 120 VGLTNDEIERLDQVCSIPASEEYPVLNLGQAATIVLYELRSLTVEDTQLP-DPTHDRAAQ 178

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
            E+    +     L+      P EK+ K       +  R      E   LRG+   
Sbjct: 179 PEIEGLHEQFAGFLDAID--HPEEKRAKTRRLFQRLIGRAHPTGRETTTLRGLFRQ 232


>gi|157156588|ref|YP_001465924.1| putative RNA methyltransferase [Escherichia coli E24377A]
 gi|157163851|ref|YP_001461169.1| putative RNA methyltransferase [Escherichia coli HS]
 gi|170021638|ref|YP_001726592.1| putative RNA methyltransferase [Escherichia coli ATCC 8739]
 gi|188493074|ref|ZP_03000344.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|193070602|ref|ZP_03051540.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|254037414|ref|ZP_04871491.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|260858577|ref|YP_003232468.1| putative rRNA methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260871125|ref|YP_003237527.1| putative rRNA methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300918110|ref|ZP_07134722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300923539|ref|ZP_07139574.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|157069531|gb|ABV08786.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
 gi|157078618|gb|ABV18326.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E24377A]
 gi|169756566|gb|ACA79265.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
           8739]
 gi|188488273|gb|EDU63376.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|192956085|gb|EDV86550.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|226840520|gb|EEH72522.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|257757226|dbj|BAI28728.1| predicted rRNA methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257767481|dbj|BAI38976.1| predicted rRNA methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|284924581|emb|CBG37720.1| putative RNA methyltransferase [Escherichia coli 042]
 gi|300414694|gb|EFJ98004.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300420213|gb|EFK03524.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|320200480|gb|EFW75066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           EC4100B]
 gi|323157707|gb|EFZ43812.1| hypothetical protein ECEPECA14_0401 [Escherichia coli EPECa14]
 gi|323176309|gb|EFZ61901.1| hypothetical protein ECOK1180_5003 [Escherichia coli 1180]
 gi|323935195|gb|EGB31558.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323945815|gb|EGB41861.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019829|gb|EGB89048.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           117-3]
 gi|332346450|gb|AEE59784.1| tRNA/rRNA methyltransferase LasT [Escherichia coli UMNK88]
          Length = 228

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|288559911|ref|YP_003423397.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
           M1]
 gi|288542621|gb|ADC46505.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
           M1]
          Length = 263

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 11/245 (4%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   ++ V+ +   N+G +AR M NF L +L L+NP      E+A   + +A   +++  
Sbjct: 27  ENIYVVFVECESPGNVGFLARTMGNFGLNKLVLINPCT--LKEEAYYQATHARDTVENAM 84

Query: 73  VFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++  + E + D  + FI  +T     ++     P      L + +     + I+FGRE  
Sbjct: 85  IYDTVGEFVKDKKIDFIIGSTGAPGGSYNISRIP-LKPEELAKSMNYNDKIAILFGREGN 143

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GLTN E+ + + I+S P +P +P +NIS A  ++++E  +N      + ++E    +T  
Sbjct: 144 GLTNAEVDMCDLIVSIPTDPSYPIMNISHAAAIILYEIFKNRNEFPVQGLEE----STAI 199

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E    +  +E  ++      P  KKK  L    +I  R  +   E   L GI+  L+   
Sbjct: 200 EKEYLIKDMEELIDNLN--IPEHKKKNGLKVFKNIVNRAFITGREAHTLIGILRRLNLKI 257

Query: 251 RQSSR 255
           +    
Sbjct: 258 KHGDE 262


>gi|82779653|ref|YP_406002.1| putative RNA methyltransferase [Shigella dysenteriae Sd197]
 gi|309787372|ref|ZP_07681984.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
           dysenteriae 1617]
 gi|81243801|gb|ABB64511.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308924950|gb|EFP70445.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
           dysenteriae 1617]
          Length = 228

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E + D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVELLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|193065649|ref|ZP_03046715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194429193|ref|ZP_03061722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|209921870|ref|YP_002295954.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|218698239|ref|YP_002405906.1| putative RNA methyltransferase [Escherichia coli 55989]
 gi|256020154|ref|ZP_05434019.1| putative RNA methyltransferase [Shigella sp. D9]
 gi|260847293|ref|YP_003225071.1| putative rRNA methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|293476666|ref|ZP_06665074.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|192926722|gb|EDV81350.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194412808|gb|EDX29101.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|209915129|dbj|BAG80203.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218354971|emb|CAV02220.1| rRNA methyltransferase [Escherichia coli 55989]
 gi|257762440|dbj|BAI33937.1| predicted rRNA methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|291321119|gb|EFE60561.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|323163224|gb|EFZ49056.1| hypothetical protein ECE128010_0585 [Escherichia coli E128010]
 gi|323181944|gb|EFZ67356.1| hypothetical protein ECOK1357_4815 [Escherichia coli 1357]
 gi|324118355|gb|EGC12249.1| RNA methyltransferase [Escherichia coli E1167]
          Length = 228

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|30065639|ref|NP_839810.1| putative RNA methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|30043903|gb|AAP19622.1| hypothetical protein S4706 [Shigella flexneri 2a str. 2457T]
          Length = 228

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV +  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVKVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|148653047|ref|YP_001280140.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148572131|gb|ABQ94190.1| RNA methyltransferase, TrmH family, group 1 [Psychrobacter sp.
           PRwf-1]
          Length = 286

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           ++P L+       I++V+  L  NIG  ARAM    LT L +VNP+     E + + +A 
Sbjct: 19  HSPDLRQRLNSVRIVMVNTTLPANIGSAARAMLTMGLTDLVVVNPKHPI-DEDSIAHAAG 77

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  V+   RV   L EA++D   ++A ++R R+  + V+ P EAA ++ +R      V I
Sbjct: 78  AQSVLRDCRVVDTLDEALSDCQLVFAASSRQRHIPRPVVTPDEAAQLVLDRPIGETKVAI 137

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FGRE  GLTNEE+AL++  I    NP +P LN++ AV ++        +  S   + + 
Sbjct: 138 LFGREDRGLTNEELALADYHIQIDANPDYPVLNVASAVQVIASFFYSRFLQHSHSKLNQT 197

Query: 184 NTPATKG 190
           N  A K 
Sbjct: 198 NDTADKD 204


>gi|325970709|ref|YP_004246900.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324025947|gb|ADY12706.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 247

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 118/251 (47%), Gaps = 12/251 (4%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q++     I+LVD Q G NIG   RAM    +T+L LV  R+ +   + R+ + +A  V 
Sbjct: 4   QSNLARIQIVLVDTQDGANIGSTCRAMKTMGITRLVLVGERE-YDENRVRTLALHASDVW 62

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           D+ + F  LKEA+A      A T R     K S L+P + A  + +       V I+FGR
Sbjct: 63  DNAKRFPTLKEALAQSVLSVAATRRRGKFRKNSALSPLQLASTIQQTGQ--GLVSIVFGR 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E  GLT++E+A  + +++ P +  FPSLN+SQAV ++ +   +       +         
Sbjct: 121 ESDGLTDDEVAQCSQVVTIPTSDQFPSLNLSQAVQIVTFTLFDTIKTYPVEANPVTQDRC 180

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            K  L S       +L+E GYF+  ++K      L   F+R  L   E+     +V    
Sbjct: 181 EKAALASC-----EALDEIGYFKLAQEKLWTFRFLRDTFVRAGLTESEIQ---KMVKVFV 232

Query: 248 KFSRQSSRRNN 258
           K SR  + +  
Sbjct: 233 KMSRIKAHKET 243


>gi|320654588|gb|EFX22600.1| putative RNA methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 228

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRRVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|333012280|gb|EGK31662.1| hypothetical protein SFK227_5376 [Shigella flexneri K-227]
          Length = 228

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +     +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGYGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|82546754|ref|YP_410701.1| RNA methyltransferase [Shigella boydii Sb227]
 gi|187733363|ref|YP_001883067.1| putative RNA methyltransferase [Shigella boydii CDC 3083-94]
 gi|81248165|gb|ABB68873.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187430355|gb|ACD09629.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|320176856|gb|EFW51884.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           CDC 74-1112]
 gi|320183575|gb|EFW58420.1| RNA methyltransferase, TrmH family, group 1 [Shigella flexneri CDC
           796-83]
 gi|332090451|gb|EGI95549.1| hypothetical protein SB359474_4016 [Shigella boydii 3594-74]
          Length = 228

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E  ++L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|255311931|pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein
           From Neisseria Gonorrhoeae
          Length = 223

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 20/220 (9%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-----------NPRD 50
           T   P L +      IIL       NIG  ARA     L +L +V           NP  
Sbjct: 5   TALKPALPDYLGNIRIILTRTSHPANIGSAARAXKTXGLHRLTIVTPNLXATPXTENPPV 64

Query: 51  GWPS--------EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
             P         E++   ++ A  V+ +  + + L EA+AD     A T+R R     + 
Sbjct: 65  FNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRREITAPLQ 124

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
            P++    L +    G+ V ++FG E +GL+ EE+   N + +   NP + SLN++QAV 
Sbjct: 125 TPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLXTINGNPDYFSLNLAQAVQ 184

Query: 163 LMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
           ++ +E    +  S   ++++++  AT  ++   L + E  
Sbjct: 185 VVCYEIFSQT-DSPXTHLQQEDHAATHEQIKGXLAHXESV 223


>gi|329296939|ref|ZP_08254275.1| putative RNA methyltransferase [Plautia stali symbiont]
          Length = 228

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 12/233 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           ILV P   ENIG  ARAM     ++LR+V   D W    AR  +  A  ++D V+ +  L
Sbjct: 6   ILVSPARPENIGAAARAMKTMGFSELRIVAS-DAWQDPAARRVAHGAGEILDHVKTYDTL 64

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A+AD+ F  ATTAR+R  F+    P +A  +L E+      + ++FGRE  GLTNEE+
Sbjct: 65  SAALADVDFSVATTARSRAKFRYYATPAQAETILQEKRQWLNRIALVFGREDSGLTNEEL 124

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
              + +   P+   +PSLN+ QAV++  ++      V++              +L +   
Sbjct: 125 EQVDLLTGIPMAQDYPSLNLGQAVMVYCYQLSALHQVAAAPVEAAN-----AQQLQALRQ 179

Query: 198 YLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
                L         +    +   +        L + +  +L  ++  ++K +
Sbjct: 180 RFHQLLVTLEVSNDAKLADWIDQRI------GLLEQRDSAMLHRLLHDVEKKT 226


>gi|323955197|gb|EGB50970.1| RNA methyltransferase [Escherichia coli H263]
          Length = 228

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +       AR  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPVARWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  KTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PS N+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSFNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMTLLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|110808190|ref|YP_691710.1| putative RNA methyltransferase [Shigella flexneri 5 str. 8401]
 gi|110617738|gb|ABF06405.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 228

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E  ++L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|156935477|ref|YP_001439393.1| putative RNA methyltransferase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533731|gb|ABU78557.1| hypothetical protein ESA_03336 [Cronobacter sakazakii ATCC BAA-894]
          Length = 228

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM     T+LR+V   +      AR  +  A  ++D+ R +  
Sbjct: 5   IILVSPARPENVGAAARAMKTMGFTELRIVAS-EAHLDPAARRVAHGAGDILDNTRHYDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+ ++ F  ATTAR+R  F     P++   +L E+        ++FGRE  GLTN+E
Sbjct: 64  LAAALEEVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPVTALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++       +  +NV      A + +L +  
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----TALMQNVPAVAPAADEQQLKALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             ++  L   G    ++    +   L        L + +  +L  ++  ++K
Sbjct: 179 LRIDTLLATLGVADDLKMADWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|110668383|ref|YP_658194.1| tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790]
 gi|109626130|emb|CAJ52582.1| probable tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 332

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 6/227 (2%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRVFSNLKE 79
           +P+   NIG +ARAM NF LT+L LV+P       +A   + +A   V+ + +   +   
Sbjct: 14  EPETPGNIGTIARAMKNFGLTELLLVDPPPIPAGSEAYGFAGHAREDVLPNAKTV-SFDA 72

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNEEIA 138
            +   H I  T     ++   V  P +    +++ + + +    ++FGRE  GLTN+E+ 
Sbjct: 73  VVNKYHTIGTTAITAEDSRHHVRFPYKTPAEISDDLKTVETETALVFGREGTGLTNDELT 132

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
             + + S P N  +P LN+ QA  ++++E    ++  ++     +   A + ++  F ++
Sbjct: 133 SLDEVCSIPANESYPVLNLGQAATVLLYELRSLTLTDTQLP-DVERERADESDIDRFYEF 191

Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVST 245
               L          K++K    L  +  R      E+  L G+   
Sbjct: 192 FTDFLHSVE--GREHKREKTALMLRRLIARAHPTNREISTLLGLFRR 236


>gi|323960117|gb|EGB55762.1| RNA methyltransferase [Escherichia coli H489]
          Length = 228

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GL N
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLAN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTMADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L         +    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDTKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|325958420|ref|YP_004289886.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
           AL-21]
 gi|325329852|gb|ADZ08914.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
           AL-21]
          Length = 233

 Score =  207 bits (529), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 17/238 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++ V+P+   NIG +AR M NF LT L L+NP +     ++   + +A  V+ +  ++
Sbjct: 2   IYVVFVEPESPGNIGFLARTMKNFGLTNLVLINPCE--LKNESYYQAMHARDVVSNCEIY 59

Query: 75  SNLKEAI--ADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             L+E +  A++    ATT     ++   K  + P+     L++ I  G N+ +IFGRE 
Sbjct: 60  ETLEEFLEKANISTAVATTGNAGGSYNISKIAVTPE----TLSDSINYGGNICLIFGREG 115

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL+N+EIAL + I+S P +  +  +N++ A  ++ +E  +         +     PA+ 
Sbjct: 116 NGLSNQEIALCDVIVSIPTHEEYQIMNVTHAAAIIFYELFKKEKSYPVDTL----EPASA 171

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            E  S    ++  + + GY  P  K K        I  R  +   E   L+G +  ++
Sbjct: 172 QEKKSLTAIMDEIIVKLGY--PEHKTKNAQLVFDRIIQRAFITGREAHTLKGTLRRIN 227


>gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
 gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
          Length = 243

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 7/242 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+++LV+P+   N+G V RAM NF + QLRLV   D +    A   S  A  ++     F
Sbjct: 6   PIVVLVEPRQPGNVGAVCRAMANFGVAQLRLVKSCDPF-HSDAVKFSVGARPLLGQAEHF 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+AD+H   A T R      ++L P E      + + +   V  +FGRE  GLT 
Sbjct: 65  PDLAAALADVHHSVALTRRTGRLRGNLL-PLEELSQRFQSVAAQSRVAFVFGREDRGLTT 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+AL +   +        SLN++QAV++ ++E         ++    Q    T  +   
Sbjct: 124 QEVALCSQAATIETTDETGSLNLAQAVVVTLYELSRR----QDRVGIVQRDQPTHDQFEP 179

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
               L+  +   GY  P  + + +   L  +  +      E+  LRG+++ L +  +   
Sbjct: 180 LFQQLDELVHRVGYVNP-SRPEVIPTMLRRLLHQAAPDVAELNQLRGLINRLSESVQDWP 238

Query: 255 RR 256
            R
Sbjct: 239 GR 240


>gi|307132664|ref|YP_003884680.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
 gi|306530193|gb|ADN00124.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
          Length = 233

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IILV P   EN+G  ARAM      ++R+V+         AR  +  +  ++D V VF  
Sbjct: 5   IILVAPARAENVGAAARAMKTMGFGRMRIVDS-TAHLEPAARWVAHGSGDILDGVDVFPT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  ATTAR+R  F     P +   VL E+     +  ++FGRE  GLTNEE
Sbjct: 64  LADALADIEFTVATTARSRARFHYYCEPAQLLSVLKEKRQWVSSAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++       S  + V  + T A  G+L +  
Sbjct: 124 LALADILTGVPMAADYPSLNLGQAVMVYCYQL-----ASLMQVVAAEPTQAEFGQLAALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
           +     L         ++ +K+ D L        L + +  +L  ++  ++K 
Sbjct: 179 ERFSRLLVRVD----AQQDEKLRDWLQQRLG--LLEQRDSAMLHRLLHDVEKA 225


>gi|262044954|ref|ZP_06017996.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037681|gb|EEW38910.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 262

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 12/237 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM      +LR+V+  +   +  AR  +  +  ++D +  + 
Sbjct: 4   TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GLTNE
Sbjct: 63  TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL++ +   P+   +PSLN+ Q+V++  ++       S  +        A   +L + 
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
                  L   G     +    +   L        L + +  +L  ++  ++K   +
Sbjct: 178 RTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEKKPAR 228


>gi|300816031|ref|ZP_07096254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300531238|gb|EFK52300.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
          Length = 228

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IIL+ P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILIAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|48477401|ref|YP_023107.1| rRNA methylase [Picrophilus torridus DSM 9790]
 gi|48430049|gb|AAT42914.1| rRNA methylase [Picrophilus torridus DSM 9790]
          Length = 235

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 8/227 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   NIG VAR+M N  LT LR+V        E AR  + +   ++D+ R++
Sbjct: 7   ISVVLVEPKYQGNIGAVARSMANSGLTDLRIVK---TPIDEDARRRAMHGLYILDNARIY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++  +A++    I  T+  +++  K    P       +    +G+ V ++FGRE  GL N
Sbjct: 64  NSFDDAVSGFDIIAGTSDVSKSGNKFSRVPVSPEYFWDNYGLNGKRVALVFGREDNGLNN 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            E++  N  I    NP +P  N+S AV ++++E ++        N+ E N   +      
Sbjct: 124 YELSKCNFFIKIIGNPEYPVYNLSHAVAIILYEMIKRVYSG---NIIESNNYISPEHFNI 180

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            ++  E  L   GY +P  K  K+      I  R  +   E F + G
Sbjct: 181 MINRFEELLNLLGYEKP--KVDKLSVMARRIAARSNITDAEYFKIMG 225


>gi|225872216|ref|YP_002753671.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
           51196]
 gi|225793787|gb|ACO33877.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
           51196]
          Length = 240

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 9/244 (3%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             L  ++    ++LV  +   NIG  ARAM NF    LR+V P D    E    S+  A 
Sbjct: 1   MTLPPASPAIAVVLVRTRNPLNIGAAARAMINFGFHDLRVVEPFDLAWQEA--RSAVGAA 58

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            ++ S R  S L +A+AD   +  T+A  +R   + ++    A   L +R+     + ++
Sbjct: 59  SILASARECSTLADAVADCTCVLGTSAIGDRQPLQPIVDLPAALPWLAQRVA--GRIALV 116

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FG+E+ GLTN +++  +AI+  P  P   S+N+ QAV + ++E   +          E  
Sbjct: 117 FGQEKHGLTNHDLSHCDAILRIPTLPEQASMNLGQAVAVCLYEFARS---GHAPTATEAP 173

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
             A   +L      L   L   GY +P+  +  +L+   ++  R  L RE+  LL G+++
Sbjct: 174 KAAPAADLERLTASLHRLLCISGYIKPIAAQGALLEA-RALIHRLTLNREDTHLLTGMLA 232

Query: 245 TLDK 248
            +++
Sbjct: 233 KIER 236


>gi|332083398|gb|EGI88629.1| hypothetical protein SB521682_5281 [Shigella boydii 5216-82]
          Length = 228

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  VID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDVIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PALAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSLWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|15804974|ref|NP_291016.1| putative RNA methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|12519435|gb|AAG59583.1|AE005671_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 228

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN  QAV +  ++          +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNXGQAVXVYCYQL-----AILIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +     L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERAMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|146310227|ref|YP_001175301.1| putative RNA methyltransferase [Enterobacter sp. 638]
 gi|145317103|gb|ABP59250.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
          Length = 228

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM       LR+V   +       R  +  +  +ID++  ++ 
Sbjct: 5   IVLVSPARAENIGAAARAMKTMGFNDLRIVAS-EAHLEPATRWVAHGSGEIIDNISTYAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R  F     P E   +L E+        ++FGRE  GLTNEE
Sbjct: 64  LADALHDISFTVATTARSRAKFHYYATPAELVPMLTEKSEWISKAALVFGREDSGLTNEE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLS 194
           + L++ +   P+   +PSLN+ QAV++  ++   +  +   +  +V E    A +    +
Sbjct: 124 LELADVLTGVPMVADYPSLNLGQAVMVYCYQLTSLMQTAAPASSSVDENQLRALRVRAEA 183

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  L ++ ++           KM++ L+    R  L + +  +L  ++  ++K
Sbjct: 184 LLSQLNVADDQ-----------KMVEWLHQRLGR--LEQRDTAMLHRLLHDIEK 224


>gi|204927155|ref|ZP_03218357.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323820|gb|EDZ09015.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 228

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 3/190 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGEL 192
           +E+AL++ +   P+   +PSLN+ QAV++  ++   +      S     E    A +   
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTTESVDIADELQLQALRARF 181

Query: 193 LSFLDYLEIS 202
           L  L  LE +
Sbjct: 182 LRLLTTLEAA 191


>gi|309704911|emb|CBJ04264.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
          Length = 206

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 6/190 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM     ++LR+V+ +        R  +  +  +ID+++VF
Sbjct: 3   ITIILVAPARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPATRWVAHGSGDIIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPTKSDTTADQHQLQA 176

Query: 195 FLDYLEISLE 204
             + +   L 
Sbjct: 177 LRERVMALLT 186


>gi|312136457|ref|YP_004003794.1| RNA methyltransferase, trmh family, group 1 [Methanothermus
           fervidus DSM 2088]
 gi|311224176|gb|ADP77032.1| RNA methyltransferase, TrmH family, group 1 [Methanothermus
           fervidus DSM 2088]
          Length = 231

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 118/242 (48%), Gaps = 19/242 (7%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   ++ V+P+   NIG +ARAM NF L +L L+NP     S++A   + +A  +I + 
Sbjct: 2   LENITVVFVEPKTAGNIGFMARAMKNFGLKKLILINPCK--LSKEAYYHAVHAKDIIKNS 59

Query: 72  RVFSNLKEAIA--DLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +V+ +L + +   +++ +  T+   A +RN  +  + P+  A  + +      N  I+FG
Sbjct: 60  KVYESLNKMLEKENINLLVGTSGVVAGDRNIERISVTPEYLAENIQK------NTAILFG 113

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           RE  GL + E+ + + I++ P +  +P +N+S A  ++ +E  +      E   + +   
Sbjct: 114 REDHGLYSHELRMCDLILTIPTSKEYPIMNVSHAAAVIFYELFK----KMEDTCEIEKEI 169

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A+  E       +   + +     P+ KK+  +    +I  R  L ++E  +L GI  ++
Sbjct: 170 ASYKEKELLKKEINEVVSKLD--MPIHKKRNAIKVFKNIIGRSFLTKKEFHVLMGIFRSI 227

Query: 247 DK 248
            +
Sbjct: 228 KR 229


>gi|108763165|ref|YP_630636.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467045|gb|ABF92230.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 240

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 3/235 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
               +L+ P+  EN+G  ARA+ N  L+    V P        AR  + +A  V+D+ R 
Sbjct: 4   PVRFVLMRPRNAENLGAAARALKNCGLSDWVWVRPEVEDLEP-ARRLAVHAGDVLDAARR 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L+EA+AD  ++  T++R     +  L P+     L  R   G  V ++FG ER GLT
Sbjct: 63  ADTLEEAVADCVWVVGTSSRKVEGKRR-LPPRAVGEELVARAPQG-PVALVFGDERSGLT 120

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N E+   + + + P  P  PS+N++QAVLL  +E     + ++          AT  EL 
Sbjct: 121 NAEVERVHDLSAVPTAPEQPSINLAQAVLLYAYEVRVAMLEAAATPPGPLPAAATDAELA 180

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                LE  L   G+    +  +  + DL++   R  L R+E  L    + +L K
Sbjct: 181 QVESTLESVLTTGGFLVDAQPGRTAVRDLFAPLRRSRLTRKEARLWLAALHSLRK 235


>gi|150400509|ref|YP_001324275.1| RNA methyltransferase [Methanococcus aeolicus Nankai-3]
 gi|150013212|gb|ABR55663.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus aeolicus
           Nankai-3]
          Length = 231

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PVIILV+P+ G N+G ++R M NF + +L++V   +    ++A   + ++  ++++ + +
Sbjct: 3   PVIILVNPKYGGNVGAISRCMMNFGVNELKIVG-NNSIIDKEAEIRAVHSKKILNNAKFY 61

Query: 75  SNLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             L+EA+ D+ F   T+     ++N  +  + PKE A    +       +G++FGRE +G
Sbjct: 62  GTLQEALEDIDFAVGTSGAVSGDKNIKRIPITPKELAE---KHKTIDGRLGLVFGREDYG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L N+E+ L +  +S P +  +P +N+S AV ++++E   +S+  S      + +   K  
Sbjct: 119 LYNDELELCDLFVSIPTSEDYPIMNLSHAVSIILYEIYNSSLEKSYNINTNKASKIEKTV 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           LL+         +      P  +K+        +  R  +  +E   L G    + K
Sbjct: 179 LLNLFGEFVNKNDTI----PEYRKELCKTIFKRLISRAFISGKEAHTLMGAFKHVKK 231


>gi|119719459|ref|YP_919954.1| RNA methyltransferase [Thermofilum pendens Hrk 5]
 gi|119524579|gb|ABL77951.1| RNA methyltransferase, TrmH family, group 1 [Thermofilum pendens
           Hrk 5]
          Length = 257

 Score =  204 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 120/249 (48%), Gaps = 16/249 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           AK   +  V+P   +NIG +AR+M NF L +L LV PR      ++R  + +A  ++++ 
Sbjct: 13  AKEVSVAFVEPLYEQNIGYIARSMKNFCLAKLYLVKPRCSV-GLESRRYAMHAADIVENA 71

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNF-KSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +  +L E +     +  TT        +  ++P E A +  E   S     ++ GRE W
Sbjct: 72  VIVGSLGELVGMHDLVACTTGVKGKPPLRRYVSPGEMASLFAESTGSKL---VVIGREDW 128

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+ EE+++ + +++   NP +PSLN S A  ++ +E       +   +V++      + 
Sbjct: 129 GLSAEELSICDMLVTIEANPEYPSLNASHAAAIVFYELF-----NKYHSVQQSLERPPRE 183

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS----TL 246
           E+ +FL +L       GY     + +++L  +  +       + ++ +L G+V     T+
Sbjct: 184 EVEAFLKHLGDLTTLLGY--DETRSERLLLSIKRLLAETRFSKTDLRILFGLVRDSLETI 241

Query: 247 DKFSRQSSR 255
            +  R+S+R
Sbjct: 242 KRTHRESAR 250


>gi|237729301|ref|ZP_04559782.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909030|gb|EEH94948.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 228

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 18/236 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   ENIG  ARAM     TQLR+V+  +       R  +  +  +ID++ VF 
Sbjct: 4   TIILVAPARAENIGAAARAMKTMGFTQLRIVDS-EAHLEPATRWVAHGSGDIIDNINVFP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L +A+ D+ F  ATTAR+R  F     P E   +L E+    ++  ++FGRE  GLTNE
Sbjct: 63  TLADALHDVDFTIATTARSRAKFHYYATPVELVPLLQEKSTWMEHAALVFGREDSGLTNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193
           E+AL++ +   P+   +PSLN+ QAV++  ++   +      + +   E    A +  +L
Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLIQQPAKNVEVTDELQLQALRARVL 182

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248
             L  L    ++           K+ D L     R   L + +  +L   +  ++K
Sbjct: 183 RLLATL-NVSDDI----------KLTDWLQ---QRMGLLGQRDTAMLHRFLHDIEK 224


>gi|238918601|ref|YP_002932115.1| RNA methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868169|gb|ACR67880.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella ictaluri
           93-146]
          Length = 238

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 14/232 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     T LR+V+ R       AR  +  A  ++D    F  
Sbjct: 5   IVLVAPARAENVGAAARAMKTMGFTSLRIVDSRADG-ESAARWVAHGAGDILDGACHFDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  A+TAR+R  F     P+E   VL E+     N  ++FGRE  GLTN+E
Sbjct: 64  LAQALEDIDFSVASTARSRARFHYYCTPQELCAVLQEKQHWMANCALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK-GELLSF 195
           +AL + +   P+   +PSLN+ QAV++  ++       SS   V+    PA +  +L + 
Sbjct: 124 LALVDLLTGVPMAADYPSLNLGQAVMVFCYQL------SSLMQVQAALAPAAQGDQLTAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
               +  L   G     +    +   +  +  R      +  +L  ++  ++
Sbjct: 178 RTRADRLLTTLGVDGDTKLSDWLDQRIGLLAQR------DTAMLHRLLHDIE 223


>gi|152973321|ref|YP_001338467.1| putative RNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958170|gb|ABR80200.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 228

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 12/233 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM      +LR+V+  +   +  AR  +  +  ++D +  + 
Sbjct: 4   TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GLTNE
Sbjct: 63  TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL++ +   P+   +PSLN+ Q+V++  ++       S  +        A   +L + 
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                  L   G     +    +   L        L + +  +L  ++  ++K
Sbjct: 178 RTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEK 224


>gi|330001784|ref|ZP_08304105.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
 gi|328537560|gb|EGF63784.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
          Length = 228

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 12/233 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM      +LR+V+  +   +  AR  +  +  ++D +  + 
Sbjct: 4   TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GL+NE
Sbjct: 63  TLAEALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL++ +   P+   +PSLN+ Q+V++  ++       S  +        A   +L + 
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                  L   G     +    +   L        L + +  +L  ++  ++K
Sbjct: 178 RTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEK 224


>gi|294634936|ref|ZP_06713454.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           ATCC 23685]
 gi|291091645|gb|EFE24206.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           ATCC 23685]
          Length = 238

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 19/252 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     T LR+V+ +       AR  +  A  ++D+   F+ 
Sbjct: 5   IVLVAPARAENVGAAARAMKTMGFTSLRIVDSQAD-REPAARWVAHGAGDILDNACHFAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+AD+ F  A+TAR+R  F     P E   +L E+     +  ++FGRE  GLTN+E
Sbjct: 64  LEQALADVEFSVASTARSRARFHYYCTPPELVGILQEKQQWMASCALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE-LLSF 195
           +AL + +   P+   +PSLN+ QAV++  ++       SS   V     PA +GE L + 
Sbjct: 124 LALVDLLTGVPMAADYPSLNLGQAVMVFCYQL------SSLMQVHAVAEPAAQGEQLAAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
                  LE  G     +    +   L  +  R      +  +L  ++  ++        
Sbjct: 178 RARTTRLLETLGVEDDSKLSDWLAQRLGLLAQR------DTAMLHRLLHDIESALN---- 227

Query: 256 RNNVLLQKTEKS 267
            N +  +K EK 
Sbjct: 228 -NGLAAKKHEKG 238


>gi|302840453|ref|XP_002951782.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f.
           nagariensis]
 gi|300263030|gb|EFJ47233.1| hypothetical protein VOLCADRAFT_117907 [Volvox carteri f.
           nagariensis]
          Length = 463

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/265 (31%), Positives = 128/265 (48%), Gaps = 36/265 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG------------------------ 51
           VI+LV+P+ GENIG  AR M NF L +LRLV P  G                        
Sbjct: 152 VIVLVEPKRGENIGAAARGMKNFGLRELRLVRPMAGAGGGGGGGGGGGGGGGGDRAVDAG 211

Query: 52  -------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP 104
                  WP EKAR+ +A A  V+DS +V+  L  A+ADL ++YA + R R   K     
Sbjct: 212 GGSGGWYWPDEKARAVAARAVDVVDSAKVYDTLDAALADLQYVYAASGRPRAQDKLAKDV 271

Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
                V +    +G  +G++FGRE  GL NEE+  +NAI++   +P F SLN+ QAVL++
Sbjct: 272 VLLRQVQDSLPPAGTRIGVMFGREDNGLYNEELVRANAILTIDTDPSFYSLNLGQAVLIV 331

Query: 165 VWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYS 224
            +E            +  +   A++ E+   LD L  +L+ R +F     +  +   +  
Sbjct: 332 CYELFRA---PRRPGLGAKRDRASRREVEGMLDRLFRALDARAFFN-QYNRDVLQYAIRG 387

Query: 225 IFIRPE-LMREEVFLLRGIVSTLDK 248
            F R   L R++V  +R ++  L +
Sbjct: 388 FFDRVNPLSRQDVAAVRQVLKALQR 412


>gi|157147586|ref|YP_001454905.1| putative RNA methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157084791|gb|ABV14469.1| hypothetical protein CKO_03386 [Citrobacter koseri ATCC BAA-895]
          Length = 228

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 112/237 (47%), Gaps = 18/237 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P   ENIG  ARAM       +R+V+ +        R  +  +  +ID++ V+
Sbjct: 3   VTIILVAPARAENIGAAARAMKTMGFGDMRIVDSQ-AHLEPATRWVAHGSADIIDNISVY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L EA+ D+ F  ATTAR+R  F     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAEALHDVDFTVATTARSRAKFHYYATPAELLPLLQEKSQWMNHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGEL 192
           EE+AL++ +   P+   +PSLN+ QAV++  ++   +   +    +        A +  +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQLAGLMQQLAKQTEVTDAPQLQALRTRV 181

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM-REEVFLLRGIVSTLDK 248
              L  L+++ ++           K+ D L     R  L  + +  +L  ++  ++K
Sbjct: 182 SQLLATLDVA-DDI----------KLADWLQ---QRLGLSGQRDTAMLHRLLHDIEK 224


>gi|302338807|ref|YP_003804013.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635992|gb|ADK81419.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 235

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 17/242 (7%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I+LV+PQ   NIG V RAM N  +  L +V  RD +   +  + + +A  +  + 
Sbjct: 1   MGNLRIVLVEPQTAGNIGSVCRAMKNMGIHDLAIVGARD-YDENRVLTLALHARDIWHNA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             F ++  A+ D  F    T R     K   L P+E A  ++        V  +FGRE  
Sbjct: 60  LRFPDIDAALEDCVFSAGITRRRGKFRKYFSLLPEEFAKRIS--AIESGTVAAVFGREAD 117

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL ++E+A  +  +  P +P FPSLN+S AV ++ +E       SS         P  + 
Sbjct: 118 GLRDDELARCSVAVHIPSSPDFPSLNLSHAVQIICYELFRCRTPSSVTF-----QPIKRR 172

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           ++      +  + +  G+F+  EK + +    + I  R  L  +E          ++K  
Sbjct: 173 DVDKVAATIVDNFDAIGFFKQDEKDE-VRIFFHDILTRAALSAKE-------AKRIEKMF 224

Query: 251 RQ 252
           R+
Sbjct: 225 RK 226


>gi|238892988|ref|YP_002917722.1| putative RNA methyltransferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545304|dbj|BAH61655.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 228

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 12/233 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM      +LR+V+  +   +  AR  +  +  ++D +  + 
Sbjct: 4   TIILVGPARAENVGAAARAMKTMGFRELRIVDS-EAHLAPPARWVAHGSGDILDGITTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GL+NE
Sbjct: 63  TLAEALRDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL++ +   P+   +PSLN+ Q+V++  ++       S  +        A   +L + 
Sbjct: 123 ELALADVLTGVPMAADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                  L   G     +    +   L        L + +  +L  ++  ++K
Sbjct: 178 RTRTLALLSRLGVEDDAKLADWLSQRL------GLLQQRDTAMLHRLLHDIEK 224


>gi|226227447|ref|YP_002761553.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226090638|dbj|BAH39083.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 283

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 121/251 (48%), Gaps = 10/251 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                ++L + Q   NIG V RAM N  +  LRL+ P    P+ +    + +   +++ +
Sbjct: 6   LNAVTVVLYESQDSINIGGVVRAMKNMGVRDLRLIRPCPYDPN-RVEQVAHDTRDIVERI 64

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + F  + EA+AD  ++   + R +        P+ AA+ L E    G  V I+FGRE  G
Sbjct: 65  QHFETIDEALADCVYVVGFSGRRQAARWQRHTPRTAAVDLLEFAQQG-RVAIMFGREDHG 123

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP--ATK 189
           L NE +  SNAI + P    F SLN++QA LL ++E    +  ++++    ++     +K
Sbjct: 124 LPNEALDRSNAICTIPTTEHF-SLNVAQACLLALYELHMLAGDATKRLPPPRHAAGSPSK 182

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG----IVST 245
            ++      +  +L    YF     ++ M+    S+  R    + E+ L+R     ++ T
Sbjct: 183 DDVERTFADMRNALTAIRYFG-TRNEELMMRTFRSLVFRANPDQRELLLIRTASIEVLRT 241

Query: 246 LDKFSRQSSRR 256
           +++ +RQ+ +R
Sbjct: 242 IERETRQAVQR 252


>gi|289826152|ref|ZP_06545264.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 234

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 1/163 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            +I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VIIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +E+AL++ +   P+   +PSLN+ QAV++  ++       + E
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPE 164


>gi|269137921|ref|YP_003294621.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983581|gb|ACY83410.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557972|gb|ADM40636.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           FL6-60]
          Length = 235

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 3/185 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   EN+G  ARAM     T LR+V+ +       AR  +  A  ++D  R F  
Sbjct: 5   IVLVAPARAENVGAAARAMKTMGFTSLRIVDSKADG-EPAARWVAHGAGDILDGARHFDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+AD+ F  A+TAR+R  F     P+E   VL E+     +  ++FGRE  GLTN+E
Sbjct: 64  LAQALADVDFSVASTARSRARFHYYCTPQELCAVLQEKQRWMASCALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLS 194
           +AL + +   P+   +PSLN+ QAV++  ++   +     +     + +   A +     
Sbjct: 124 LALVDLLTGVPMAADYPSLNLGQAVMVFCYQLSSLMQVQAAQAPAAQGEQLAALRARTDR 183

Query: 195 FLDYL 199
            L  L
Sbjct: 184 LLTTL 188


>gi|213417006|ref|ZP_03350150.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 234

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 1/163 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +E+AL++ +   P+   +PSLN+ QAV++  ++       + E
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPE 164


>gi|116071061|ref|ZP_01468330.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
 gi|116066466|gb|EAU72223.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
          Length = 256

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 14/253 (5%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
               V++LV+P    NIG VAR   NFN+ +LRLV PR    SE +   + +   ++ + 
Sbjct: 1   MNNVVVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHTA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----NVGIIFGR 127
           +++  L  AI D     A+  R  +    +  P EA   L  +    Q     + ++FGR
Sbjct: 61  KLYPTLLSAIGDCRRSVASCGRIDHGAIPLHPPTEALTWLLAKPTPAQPQPGPIAVVFGR 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP- 186
           E  GL+N+E+ L   +++      +PSLN+S +V +++ +    S         +     
Sbjct: 121 EDRGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDLARLSTNLHTPPTTDPTALQ 180

Query: 187 --------ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL 238
                   A    L + LD     L E G+        + +  +  +  R  +  EEV L
Sbjct: 181 APRATPDPAAAPALAALLDDATDLLLEAGFLLQHTAHAR-MGKVRDLLQRATIRTEEVAL 239

Query: 239 LRGIVSTLDKFSR 251
           +RG+V  L    R
Sbjct: 240 IRGMVRQLRWAIR 252


>gi|320177676|gb|EFW52665.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii ATCC
           9905]
          Length = 228

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV     ENIG  ARAM     ++LR+V+ +        R        VID+++VF
Sbjct: 3   ITIILVALARAENIGAAARAMKTMGFSELRIVDSQ-AHLEPAIRWVVHGFGDVIDNIKVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E++ D+ F  ATTAR+R  +     P E   +L E+     +  ++FGRE  GLTN
Sbjct: 62  PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+AL++ +   P+   +PSLN+ QAV++  ++       +  +   + +T A + +L +
Sbjct: 122 EELALADVLTGVPMVADYPSLNLGQAVMVYCYQL-----ATLIQQPAKSDTTADQHQLQA 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             + +   L        ++    +   L        L + +  +L  ++  ++K
Sbjct: 177 LRERVMALLTTLAVADDIKLVDWLQQRL------GLLEQRDTAMLHRLLHDIEK 224


>gi|159480144|ref|XP_001698144.1| hypothetical protein CHLREDRAFT_120803 [Chlamydomonas reinhardtii]
 gi|158273642|gb|EDO99429.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 154

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 102/154 (66%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P +ILV+PQ GENIG  ARAM NF L  LR+V PRDGWP+  A ++S++A  ++++ R++
Sbjct: 1   PAVILVEPQFGENIGAAARAMKNFGLHDLRVVRPRDGWPNPLAVATSSHAADLLEAARLY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +++ AIADL  +YA TAR R   K  +  K+      +        G++FGRE  GLTN
Sbjct: 61  DSVEAAIADLDRVYAATARTRFMHKPFVTSKQGPADATDVAARMPRAGLMFGRESSGLTN 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           EE+AL+N +++   NP++P LN++QA++ + +E 
Sbjct: 121 EEVALANKVLTIEANPVYPVLNLAQAIVCVSYEL 154


>gi|332978754|gb|EGK15446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Psychrobacter
           sp. 1501(2011)]
          Length = 300

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 2/183 (1%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L    +   I++V+  L  NIG  ARAM    LT L +V+PR     E + + +A A  
Sbjct: 20  ALNQRLQNIRIVMVNTTLPANIGSAARAMLTMGLTDLVIVDPRHPI-DEDSVAHAAGAKS 78

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V+D+  V  +L++A+AD H ++A ++R R+  + V+ P  AA ++  R      V ++FG
Sbjct: 79  VLDNCTVVDSLEQALADCHLVFAASSRQRHIPRPVVTPDNAAKLILSRPAEDTKVAVLFG 138

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           RE  GLTN+E+A+++  I    NP +P LN++ A+ ++        +  +   +   N P
Sbjct: 139 REDRGLTNQELAMADYHIQIDANPDYPVLNVASAIQVISSFFYSRFLQDAHSKLTVSN-P 197

Query: 187 ATK 189
           AT 
Sbjct: 198 ATS 200


>gi|15679837|ref|NP_276955.1| hypothetical protein MTH1849 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622984|gb|AAB86315.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 240

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 12/244 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             L+  A+   ++ V+P+   NIG +ARAM NF L  L L+NP +    ++A   + +A 
Sbjct: 2   EALKMLAENISVVFVEPETPGNIGFLARAMKNFGLRTLILINPCE--LEDEAYYQAMHAR 59

Query: 66  CVIDSVRVFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +++   ++ +L E I  L   F+  TT     ++     P      L + I       I
Sbjct: 60  DIVEGALIYRDLSEMIDSLEPDFLVGTTGVPGGSYNVDRIP-LRPSQLADAIRPSSGTFI 118

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FGRE  GL+NEEI L + ++S P +  +P +NI+ A  ++ +E   +      +   E 
Sbjct: 119 LFGREGDGLSNEEIGLCDMVVSVPTSEEYPIMNITHAAAIIFYELFRDR-----EFRCEG 173

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
              A+  E    L+ ++  L       P  K++       +I  R  +   E   L+G++
Sbjct: 174 LEEASALEKSLLLEEMDDILSLID--IPEHKQRVASRVFRNITGRAFITAREAHTLKGVL 231

Query: 244 STLD 247
             + 
Sbjct: 232 RRIK 235


>gi|292657019|ref|YP_003536916.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
           DS2]
 gi|291371341|gb|ADE03568.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
           DS2]
          Length = 275

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 108/237 (45%), Gaps = 6/237 (2%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRVFSNLKE 79
           +P+   N+G +ARAM NF +  LRLV+P    P  +A   + +A   V+ +    +  +E
Sbjct: 37  EPETPGNVGTIARAMKNFGIYDLRLVDPPPLDPDGEAYGFAGHAREDVLPNATETTL-EE 95

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNEEIA 138
            + + H +  T   + ++ + V  P +  + + + + S +    ++FGRE  GL NEE+A
Sbjct: 96  VVEEFHTVGTTAVSHEDSTRHVRYPFKTPVEIADSLESVETKTALVFGREGTGLDNEELA 155

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
           + + +   P +  +P LN+ QA  L+++E    ++  ++     +   A++ E+     +
Sbjct: 156 MLDEVCCIPADDRYPVLNLGQAATLLMYELRRFTVEETQLP-DVERERASEAEIEVVYRF 214

Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
            +  L+   Y     K+ K    +  +  R      E   L G+     +  R   R
Sbjct: 215 FDELLDAVDY--REHKRTKTSRMMRRLLGRAHPTEREAATLTGVFRRAAEAVRDPDR 269


>gi|205355311|ref|YP_002229112.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859721|ref|YP_002246372.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205275092|emb|CAR40184.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206711524|emb|CAR35909.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326630478|gb|EGE36821.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 228

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|20093957|ref|NP_613804.1| rRNA methylase [Methanopyrus kandleri AV19]
 gi|19886913|gb|AAM01734.1| rRNA methylase [Methanopyrus kandleri AV19]
          Length = 234

 Score =  201 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 11/243 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   NIG VAR M NF + +L LV PR     E A + + +A  ++++  + 
Sbjct: 3   VRVVLVEPKYDGNIGHVARVMKNFGVKELFLVRPRSE-LGEVAIARAMHALDLLENAVIV 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L+EAI D+    ATTA   +       P      + E     + + ++FG E  GL  
Sbjct: 62  NTLEEAIEDVEAAIATTAVLAST--PARNP-MMPWEVREAFSDYEKIAVVFGPEDRGLRT 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            E+ L +A +  P +  + S+N+S +V ++++E  +   V      +     ATK E   
Sbjct: 119 WEVELCDATLHIPTSEEYRSMNLSHSVAVVLYELKKMEYVP-----ERYGRAATKREKEV 173

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
            +  L+  ++   +     +++ +         R     +E+  L  I     +      
Sbjct: 174 LVKSLDDLMKALNF--DSTRRENVCTTFRRFLARARCTDKEIKALLWIFEKAKRRVLGVK 231

Query: 255 RRN 257
           RRN
Sbjct: 232 RRN 234


>gi|302341742|ref|YP_003806271.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
 gi|301638355|gb|ADK83677.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
          Length = 251

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 124/251 (49%), Gaps = 3/251 (1%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L +  +   ++LV P++ ENIG  ARA+ N  L  LRLV+P D         ++A    
Sbjct: 4   ALLDLLQNVFVVLVRPRVPENIGAAARAVANMGLGGLRLVDPADLTDKPMRALATAQGQR 63

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V++S+ V  +L  A+AD     ATTAR      +++ P++AA  +      G  V ++FG
Sbjct: 64  VLESMTVSDSLAAALADCVAAAATTARLGERRGALIPPRQAAPEIMTWARRG-PVAVVFG 122

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E  GL++E++ L    I+ P +    SLN++Q+V+++ +E    +   +    ++  TP
Sbjct: 123 PEDRGLSHEQVDLCRLSINIPTSQA-SSLNLAQSVIVLAYELRLAAENGAGLERRKLPTP 181

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           A  GE+ + L +L+ +    G+          +  L +   R  +  +EV   RG+   +
Sbjct: 182 APLGEIQALLAHLQEAFVNIGHLD-ANNPAHFMRLLKAPLERAAMTSKEVRAWRGVARQV 240

Query: 247 DKFSRQSSRRN 257
           +    + +R++
Sbjct: 241 NWLHGRLARKD 251


>gi|167989847|ref|ZP_02570947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234736|ref|ZP_02659794.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168262343|ref|ZP_02684316.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464476|ref|ZP_02698379.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168822143|ref|ZP_02834143.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197262963|ref|ZP_03163037.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200386516|ref|ZP_03213128.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|195632601|gb|EDX51055.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197241218|gb|EDY23838.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197292006|gb|EDY31356.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199603614|gb|EDZ02159.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205331570|gb|EDZ18334.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205341380|gb|EDZ28144.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205348701|gb|EDZ35332.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261249679|emb|CBG27551.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996964|gb|ACY91849.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301161078|emb|CBW20616.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320089029|emb|CBY98785.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222432|gb|EFX47504.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132941|gb|ADX20371.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991406|gb|AEF10389.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 228

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|167552173|ref|ZP_02345926.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323136|gb|EDZ10975.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 228

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  RTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|78184293|ref|YP_376728.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
 gi|78168587|gb|ABB25684.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
          Length = 253

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 14/249 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV+P    NIG VAR   NFN+ +LRLV PR    SE +   + +   ++ S +++ 
Sbjct: 2   VVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHSAKLYP 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER----IFSGQNVGIIFGRERWG 131
            L  AI D     A+  R  +    + +P +A   L  R          + ++FGRE  G
Sbjct: 62  TLLSAIGDCRRSVASCGRIDHGAIPLHSPTDALTWLLARPTPEPHQPGPIAVVFGREDRG 121

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI-VSSEKNVKEQNTPA--- 187
           L+N+E+ L   +++      +PSLN+S +V +++ +    S  +           PA   
Sbjct: 122 LSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDMARLSTKLHIPSTADPSAKPAQLP 181

Query: 188 -----TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGI 242
                    L + LD     L E G+        + +  +  +  R  +  EEV L+RG+
Sbjct: 182 SPDPAAAPALTALLDDATDLLLEAGFLLQHTAHAR-MGKVRDLLQRATIRTEEVALIRGM 240

Query: 243 VSTLDKFSR 251
           V  L    R
Sbjct: 241 VRQLRWAIR 249


>gi|116620037|ref|YP_822193.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223199|gb|ABJ81908.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 252

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 10/257 (3%)

Query: 1   MTPYAPQLQ-----NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           M P+ P L      N      ++LV  +   NIG  ARAM NF  ++L +V P D    E
Sbjct: 1   MPPFGPALPLNINANWKNNLRVVLVSTRNPLNIGAAARAMANFGFSRLGVVAPYDVAFRE 60

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
               S+  A  ++     F ++  A+AD   +  TT+      +  +   E    L  + 
Sbjct: 61  A--RSAVGAAPLLQKAEEFPSVAAAVADCRLVVGTTSVGHRELQHPIRRLEYGARLMLKG 118

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V ++FG E++GL+NE+++  + ++  P      S+N+ QAV L ++E   +   +
Sbjct: 119 LPAAPVALLFGSEKFGLSNEDLSHCHWLMRIPTVGQDLSMNLGQAVALCLYELARDPKAA 178

Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
                 E+   A  GEL      L   L   GY  PV       + +  +  R E+   +
Sbjct: 179 LAS--PEKIRSANAGELEQITTRLLEVLNRSGYVNPVTSI-STDEKVRRLVRRLEIPGRD 235

Query: 236 VFLLRGIVSTLDKFSRQ 252
             ++ G++  +      
Sbjct: 236 AKVILGMLRQILWKLEN 252


>gi|168230251|ref|ZP_02655309.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471963|ref|ZP_03077947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458327|gb|EDX47166.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335164|gb|EDZ21928.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 228

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  RTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|291086095|ref|ZP_06354807.2| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
           ATCC 29220]
 gi|291069358|gb|EFE07467.1| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
           ATCC 29220]
          Length = 242

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 18/236 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   ENIG  ARAM     TQLR+V+  +       R  +  +  +ID++ VF 
Sbjct: 18  TIILVAPARAENIGAAARAMKTMGFTQLRIVDS-EAHLEPATRWVAHGSGDIIDNINVFP 76

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ D+ F  ATTAR+R  F     P E   +L E+     +  ++FGRE  GLTNE
Sbjct: 77  TLAEALHDVDFTVATTARSRAKFHYYATPVELVPLLQEKSTWMDHAALVFGREDSGLTNE 136

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193
           E+AL++ +    +   +PSLN+ QAV++  ++   +      +     E    A +  +L
Sbjct: 137 ELALADVLTGVTMVADYPSLNLGQAVMVYCYQLAGLIQQPAKNIDVTDELQLQALRARVL 196

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDK 248
             L  L    ++           K+ D L     R   L + +  +L   +  ++K
Sbjct: 197 RLLATL-NVSDDI----------KLTDWLQ---QRMGLLGQRDTAMLHRFLHDIEK 238


>gi|218551706|ref|YP_002385498.1| RNA methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218359248|emb|CAQ91914.1| rRNA methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 228

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 16/235 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   ENIG  ARAM      ++R+V+ +        R  +  +  +ID++ VFS
Sbjct: 4   TIILVAPARAENIGAAARAMKTMGFHEMRIVDSQ-AHLEPATRWVAHGSGDIIDNIAVFS 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L EA+ D+ F  ATTAR+R  F     P E   +L E+     +V ++FGRE  GLTNE
Sbjct: 63  SLAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDSGLTNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193
           E+AL++ +   P+   +PSLN+ QAV++  ++   +    + +     E    A +  ++
Sbjct: 123 ELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLTALRTRVM 182

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             L  L+++ ++           K+++ L        L + +  +L  ++  ++K
Sbjct: 183 RLLSTLDVA-DDV----------KLVEWLQQRLG--LLGQRDTAMLHRLLHDIEK 224


>gi|16763388|ref|NP_459005.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144866|ref|NP_808208.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213163203|ref|ZP_03348913.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427599|ref|ZP_03360349.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213620574|ref|ZP_03373357.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213649674|ref|ZP_03379727.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865406|ref|ZP_03387525.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289806550|ref|ZP_06537179.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|25304298|pir||AH1076 probable RNA methyltransferase lasT [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505697|emb|CAD03431.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140505|gb|AAO72068.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 228

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 1/163 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +E+AL++ +   P+   +PSLN+ QAV++  ++       + E
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQQTPE 164


>gi|238910757|ref|ZP_04654594.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 228

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155


>gi|56416369|ref|YP_153444.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365290|ref|YP_002144927.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130626|gb|AAV80132.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096767|emb|CAR62391.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 228

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
           6192]
 gi|306531598|gb|ADN01132.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
           6192]
          Length = 236

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 8/210 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +ILV+P+  EN+GMVARAM N    +L LV P     S  AR  + +A+ +++  RV 
Sbjct: 2   VRVILVEPEGAENVGMVARAMANMGHERLVLVRPACDHLSPPARRYAVHAESILEGARVC 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L EA+  +    A T R+       L   E    L E  F+G++V ++FGRER GLT+
Sbjct: 62  ETLAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAE--FTGRDVALVFGRERTGLTS 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+   + I++ P +   PSLN++QAV+++++E M  S +S     +E   P     ++ 
Sbjct: 120 EEVQACDLILTIPSSGACPSLNLAQAVMVVLYELMRASFLSLAPRREEDLRPYLDEAVVR 179

Query: 195 FLDYLEISLEERGYFR--PVEKKKKMLDDL 222
                   LE+ GY+R  P EK    +  +
Sbjct: 180 ----AREVLEKLGYYRNIPEEKVAFAVRKV 205


>gi|62183015|ref|YP_219432.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224586415|ref|YP_002640214.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130648|gb|AAX68351.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224470943|gb|ACN48773.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322615759|gb|EFY12679.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620607|gb|EFY17467.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621765|gb|EFY18615.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627490|gb|EFY24281.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630797|gb|EFY27561.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637984|gb|EFY34685.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642253|gb|EFY38861.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645972|gb|EFY42490.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651139|gb|EFY47524.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656604|gb|EFY52892.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658737|gb|EFY54994.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661820|gb|EFY58036.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666433|gb|EFY62611.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672409|gb|EFY68521.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676281|gb|EFY72352.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679628|gb|EFY75673.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684338|gb|EFY80342.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322717522|gb|EFZ09093.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191821|gb|EFZ77070.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198910|gb|EFZ84008.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200976|gb|EFZ86045.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209373|gb|EFZ94306.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212939|gb|EFZ97741.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216682|gb|EGA01407.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219820|gb|EGA04299.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226115|gb|EGA10332.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228768|gb|EGA12897.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236620|gb|EGA20696.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239879|gb|EGA23926.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242073|gb|EGA26102.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247486|gb|EGA31441.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250588|gb|EGA34470.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259317|gb|EGA42959.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263805|gb|EGA47326.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265600|gb|EGA49096.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270045|gb|EGA53493.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 228

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  RTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|237800027|ref|ZP_04588488.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022882|gb|EGI02939.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 171

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 7/168 (4%)

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R+    +L P+ +   + E+   G  V ++FGRE  GLTNEE+   +  +  P +P F S
Sbjct: 1   RSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGLTNEELQRCHFHVHIPSDPAFSS 60

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQN------TPATKGELLSFLDYLEISLEERGY 208
           LN++ AV ++ +E     +  SE+    +         AT  E+  F  +LE +L + G+
Sbjct: 61  LNLAAAVQVLSYEVRMAWLALSEQGEASRPASAHSAELATMDEMEGFYGHLESTLVDIGF 120

Query: 209 FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
             P EK + ++  L  +F R E+ R E+ +LRG+++   K +R    +
Sbjct: 121 LDP-EKPRHLMARLRRLFGRSEVERSELSILRGVLTETQKVARGEPYK 167


>gi|161504866|ref|YP_001571978.1| putative RNA methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866213|gb|ABX22836.1| hypothetical protein SARI_02991 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 228

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIAVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|288937243|ref|YP_003441302.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|288891952|gb|ADC60270.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
          Length = 228

 Score =  199 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 12/233 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM       LR+V+  +   +  AR  +  +  ++D V  + 
Sbjct: 4   TIILVAPARAENVGAAARAMKTMGFRDLRIVDS-EAHLAPAARWVAHGSGDILDGVTTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GL+NE
Sbjct: 63  TLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL++ +   P+   +PSLN+ Q+V++  ++       S  +        A   +L + 
Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               E  L   G     +    +   +        L + +  +L  ++  ++K
Sbjct: 178 RIRTEALLSRLGVEEDAKLADWLAQRM------GLLQQRDTAMLHRLLHDIEK 224


>gi|324112605|gb|EGC06582.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325495934|gb|EGC93793.1| RNA methyltransferase [Escherichia fergusonii ECD227]
          Length = 228

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 16/235 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   ENIG  ARAM      ++R+V+ +        R  +  +  +ID++ VFS
Sbjct: 4   TIILVAPARAENIGAAARAMKTMGFHEMRIVDSQ-AHLEPATRWVAHGSGDIIDNIAVFS 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L EA+ D+ F  ATTAR+R  F     P E   +L E+     +  ++FGRE  GLTNE
Sbjct: 63  SLAEALQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHAALVFGREDSGLTNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELL 193
           E+AL++ +   P+   +PSLN+ QAV++  ++   +    + +     E    A +  ++
Sbjct: 123 ELALADILTGVPMVADYPSLNLGQAVMVYCYQLANLMQQPIKALDMSDEHQLTALRTRVM 182

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             L  L+++ ++           K+++ L        L + +  +L  ++  ++K
Sbjct: 183 RLLSTLDVA-DDV----------KLVEWLQQRLG--LLGQRDTAMLHRLLHDIEK 224


>gi|197249650|ref|YP_002149541.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213353|gb|ACH50750.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 228

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  RTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMVADYPSLNLGQAVMVYCYQL 155


>gi|206580923|ref|YP_002240548.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|290512648|ref|ZP_06552014.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
 gi|206569981|gb|ACI11757.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|289774989|gb|EFD82991.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
          Length = 228

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 12/233 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IILV P   EN+G  ARAM       LR+V+  +   +  AR  +  +  ++D V  + 
Sbjct: 4   TIILVAPARAENVGAAARAMKTMGFRDLRIVDS-EAHLAPAARWVAHGSGDILDGVTTYP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+ D+ F  ATTAR+R  F     P++   +L E+     +  ++FGRE  GL+NE
Sbjct: 63  TLAAALHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGREDSGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL++ +   P+   +PSLN+ Q+V++  ++       S  +        A   +L + 
Sbjct: 123 ELALADVLTGVPMVADYPSLNLGQSVMVYCYQL-----ASLMQQTAPAAAAADHHQLQAL 177

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               E  L   G     +    +   +        L + +  +L  ++  ++K
Sbjct: 178 RIRTEALLSRLGVEEDAKLADWLAQRM------GLLQQRDTAMLHRLLHDIEK 224


>gi|168244498|ref|ZP_02669430.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205336649|gb|EDZ23413.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 228

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|315187477|gb|EFU21233.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 236

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/215 (32%), Positives = 114/215 (53%), Gaps = 7/215 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +ILV+P+  EN+GMVARAM N    +L LV P     S  A+  + +A+ +++  RV 
Sbjct: 2   VRVILVEPEGAENVGMVARAMANMGRERLVLVRPACDHLSPPAQRYAVHAESILEGARVC 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L EA+  +    A T R+       L   E    L E  F+G+ V ++FGRER GLT+
Sbjct: 62  ETLAEALDGVDLRVAVTRRHGQYRMPDLYLPEFPAFLAE--FTGREVALVFGRERTGLTS 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE+   + I++ P +   PSLN++QAV+++++E M  S +S   N +E   P  +  ++ 
Sbjct: 120 EEVQACDLILTIPSSGSCPSLNLAQAVMVVLYELMRASFLSLAPNREEDLRPYLEEAVVR 179

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
                   LE+ GY+R +  ++K+   +  +  R 
Sbjct: 180 ----AREVLEKLGYYRNI-PEEKVAFSVRKVIARM 209


>gi|310820269|ref|YP_003952627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
 gi|309393341|gb|ADO70800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 3/235 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
               +L+ P+  EN+G  ARAM N  L++   V P        AR  + +A+ ++D VR 
Sbjct: 4   PIRFVLMRPRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP-ARRLAVHAEELLDGVRR 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L+ A+AD  ++  T++R     + +L P+     L  R   G  V I+FG ER GLT
Sbjct: 63  EDSLEAAVADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARAAQG-PVAIVFGDERSGLT 120

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N E+   + + + P +P  PS+N++QAVLL  +E    S+ ++          A+  EL 
Sbjct: 121 NAEVERCHDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELA 180

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              + LE  L+  G+       +  L D+++   R  L   E  L    + TL K
Sbjct: 181 RVEETLETLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRK 235


>gi|34580886|ref|ZP_00142366.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
 gi|28262271|gb|EAA25775.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
          Length = 168

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 106/165 (64%), Gaps = 5/165 (3%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            P+IILV PQ+G NIG  ARAM NF L +LR+V PRDGWP+E+ARS++  A  +ID  ++
Sbjct: 2   NPIIILVTPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKI 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F +L+++I DL ++YATT   R   K  +  +   +       + + VGI+FGRE  GL+
Sbjct: 62  FDSLEDSIKDLEYLYATTCIKRAMNKDYVFSQNLPLD----YPNSEKVGIMFGRENNGLS 117

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           NEEIA +  II+      F SLNI+QAV+++ +E + NS    ++
Sbjct: 118 NEEIAFATKIITINTT-EFSSLNIAQAVIIICYELLRNSTPREDR 161


>gi|150403255|ref|YP_001330549.1| RNA methyltransferase [Methanococcus maripaludis C7]
 gi|150034285|gb|ABR66398.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C7]
          Length = 234

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 17/242 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NF++ +LR+V        E+A   + +A  ++++ + +S
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-NSEILDEEAYIRAVHAKNILNNTKFYS 62

Query: 76  NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            L++AI D+ F  ATT     +RN  +  + P+E A    E      ++GI+FGRE  GL
Sbjct: 63  TLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVEL---NGSLGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE- 191
            NE++ L + ++S P +  +P +N+S AV ++++E    S+ S +         A+  E 
Sbjct: 120 KNEDVELCDILVSVPTSNKYPIMNLSHAVSVLLYEIYFESL-SEDSPYDLNMKNASIDEK 178

Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             LL F +      ++     P  +K         I  R  +  +E   L G+    DK+
Sbjct: 179 NALLRFFNEFVDRSKDV----PEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKY 232

Query: 250 SR 251
            +
Sbjct: 233 PK 234


>gi|194443042|ref|YP_002043840.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401705|gb|ACF61927.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 228

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L + + D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADVLHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|153005807|ref|YP_001380132.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152029380|gb|ABS27148.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            +A    I+L+ P+  EN+G VARAM NF L    +           AR  + +A+ ++D
Sbjct: 6   PAAPPVRIVLLRPRNPENLGAVARAMKNFGLADWAI-AELGTHDFATARRVAVHAEDLLD 64

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R+   L EA+AD  ++  T++R R   K  L+P E A    ER  +G    ++FG ER
Sbjct: 65  RPRLVRTLDEAVADCAWVVGTSSR-RVRGKRRLSPAEVAREAMERAPAG-RTALVFGDER 122

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            GL N+E+   + + + P +   PS+N++QAVLL  +E    ++ + E         AT 
Sbjct: 123 SGLANDEVLRCHDLSAIPTDEAQPSVNLAQAVLLYAYELRRAALATREPAPAAAG--ATD 180

Query: 190 GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           GEL    + L  +L E G+    E  +  + DL S   R  L R EV L    + T+ +
Sbjct: 181 GELRGLEEMLRAALRETGFLAGPE--RHAVRDLLSPLRRARLTRSEVRLWTAALRTMGR 237


>gi|194450554|ref|YP_002048619.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408858|gb|ACF69077.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
          Length = 228

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGCTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|222479804|ref|YP_002566041.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452706|gb|ACM56971.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 290

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 6/222 (2%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRVFSNLKEAIAD 83
             N+G +ARAM NF L+ L+LV+P +     +A   + +A   V+ +        E +A+
Sbjct: 49  PGNVGTIARAMKNFGLSDLKLVDPPELKEDGEAYGFAGHAREDVLPNADEV-TFDEIVAN 107

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNA 142
            H +  T     ++      P +  + L E + +      I+FGRE  GL NEE++  + 
Sbjct: 108 YHTVGTTAITGEDDQSHERFPFKTPVELRESLKTVDAPTAIVFGREGRGLNNEELSQLDE 167

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
           + S P +  +P LN+ QA  ++++E  + ++  ++       T A + ++  F ++    
Sbjct: 168 VCSIPADDDYPVLNLGQAATVLLYELRDLTVDETQLP-DTAVTRAPEPDVERFHEFFGDF 226

Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVS 244
           LE  G  +    + K    +  +  R      E+  L G   
Sbjct: 227 LEATG--QREHHRDKNALLVRRLLGRAHPTEREIHSLLGTFR 266


>gi|16082580|ref|NP_394470.1| rRNA methylase [Thermoplasma acidophilum DSM 1728]
          Length = 251

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   I+LV P+   NIG VAR+MWN  L  L ++  R   P ++A + S     ++++  
Sbjct: 9   ENVYIVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENAE 65

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ +    I+  + I AT++   +N K     P        E    G  + ++FGRE  G
Sbjct: 66  IYDDFASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQGGKIALVFGREDDG 125

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NEEI   N  I+ P NP +P  N+S AV ++++  +  +  +  +N++ +       +
Sbjct: 126 LRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILY--VMFTRFNPPENIEIRAIEPDHED 183

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L   L  +   +    Y  P  K +     L  +  R  +   E F + G++  + +  +
Sbjct: 184 L--MLRNIIEVMRLTSY--PEHKIRNTELLLRRLIARSRMSDREYFRMMGVIRRVKESLQ 239

Query: 252 QS 253
           + 
Sbjct: 240 RP 241


>gi|213580553|ref|ZP_03362379.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 154

 Score =  197 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 1/153 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +E+AL++ +   P+   +PSLN+ QAV++  ++
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQ 154


>gi|304314187|ref|YP_003849334.1| rRNA methylase [Methanothermobacter marburgensis str. Marburg]
 gi|302587646|gb|ADL58021.1| predicted rRNA methylase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 240

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   ++ V+P+   N+G +ARAM NF L  L L+NP      ++A   + +A  +++   
Sbjct: 9   RNIGVVFVEPETPGNVGFLARAMKNFGLQNLILINPCS--LEDEAYYQAMHARDLVEDAI 66

Query: 73  VFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++  L E I +L   F+  TT     ++     P      L   I       I+FGRE  
Sbjct: 67  IYQTLDEMIENLEPDFLVGTTGVPGGSYNVDRIP-LRPSQLASAINPSSRTFILFGREGD 125

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           GL+N E+ L + ++S P +  +P +NI+ A  ++ +E  +           E    A+  
Sbjct: 126 GLSNRELGLCDMVVSIPTDREYPIMNITHAAAIIFYEIFKKRDFDC-----EGLEDASGV 180

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
           E    +D ++  L       P  K++       ++  R      E   L+G++  +    
Sbjct: 181 EKKLLVDEMDEILSLID--IPPHKERVASRVFRNVTGRAFRTAREDHTLKGVLRRIKNRM 238

Query: 251 RQ 252
           ++
Sbjct: 239 KE 240


>gi|311281011|ref|YP_003943242.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
 gi|308750206|gb|ADO49958.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
          Length = 228

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P   ENIG  ARAM     T++R+V+         A+  +  A  +++++  ++ 
Sbjct: 5   IVLVSPARAENIGAAARAMKTMGFTEMRIVDS-VAHREPGAQRVAHGAGDILENITTWAT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+ D+ F  ATTAR+R  F     P+E   +L E+    Q+  ++FGRE  GLTN+E
Sbjct: 64  LAEALHDVDFTIATTARSRARFHYYATPQELVPLLEEKSQWLQHAALVFGREDSGLTNDE 123

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +   P+   +PSLN+ QAV++  ++    +   +            + +L +  
Sbjct: 124 LALADVLTGVPMVADYPSLNLGQAVMVYCYQLSSLTQNRATAVAGG-----DENQLQALR 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
              +  L         +    +   +  +  R      +  +L  ++  ++K
Sbjct: 179 LRTQALLARLQVADDHKLADWLQQRIGLLAQR------DTAMLHRLLHDIEK 224


>gi|159905005|ref|YP_001548667.1| RNA methyltransferase [Methanococcus maripaludis C6]
 gi|159886498|gb|ABX01435.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C6]
          Length = 234

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 17/242 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NF++ +LR+V        E+A   + +A  ++++ + +S
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TSDILDEEAYIRAVHAKNILNNAKFYS 62

Query: 76  NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            L++AI D+ F  ATT     +RN  +  + P+E A    + +    ++GI+FGRE  GL
Sbjct: 63  KLEDAIFDIDFTVATTGAVCGDRNINRVPVTPRELA---KKHLDLNGSLGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE- 191
            NE++   + ++S P +  +P +N+S AV ++++E    S+             A+  E 
Sbjct: 120 KNEDVEFCDILVSVPTSNKYPIMNLSHAVSVLLYEIYFESLSEDIPYDLNMKN-ASIDEK 178

Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             LL F +      ++     P  +K         I  R  +  +E   L G+    DK+
Sbjct: 179 NALLRFFNEFVDRSKDV----PEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKY 232

Query: 250 SR 251
            +
Sbjct: 233 PK 234


>gi|10640325|emb|CAC12139.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 291

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   I+LV P+   NIG VAR+MWN  L  L ++  R   P ++A + S     ++++  
Sbjct: 49  ENVYIVLVYPKYQGNIGAVARSMWNSGLRHLIIIGNR---PDDEAFARSMGGRFILENAE 105

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ +    I+  + I AT++   +N K     P        E    G  + ++FGRE  G
Sbjct: 106 IYDDFASVISRFNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQGGKIALVFGREDDG 165

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L NEEI   N  I+ P NP +P  N+S AV ++++  +  +  +  +N++ +       +
Sbjct: 166 LRNEEIEKCNYFINIPGNPEYPVYNLSHAVAIILY--VMFTRFNPPENIEIRAIEPDHED 223

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           L   L  +   +    Y  P  K +     L  +  R  +   E F + G++  + +  +
Sbjct: 224 L--MLRNIIEVMRLTSY--PEHKIRNTELLLRRLIARSRMSDREYFRMMGVIRRVKESLQ 279

Query: 252 QS 253
           + 
Sbjct: 280 RP 281


>gi|134046367|ref|YP_001097852.1| RNA methyltransferase [Methanococcus maripaludis C5]
 gi|132663992|gb|ABO35638.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C5]
          Length = 254

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 17/242 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NF++ +LR+V        E+A   + +A  ++++ + +S
Sbjct: 24  VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TSDVLDEEAYIRAVHAKNILNNAKFYS 82

Query: 76  NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            L++AI D+ F  ATT     +RN  +  + P+E A    E       +GI+FGRE  GL
Sbjct: 83  KLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVEL---NGRLGIVFGREDDGL 139

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE- 191
            NE + L + ++S P +  +P +N+S AV ++++E    S+  +          A+  E 
Sbjct: 140 KNEYVELCDILVSVPTSNNYPIMNLSHAVSVLLYEIYFESLSENIPYDLNMKN-ASIDEK 198

Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
             LL F +      ++     P  +K         I  R  +  +E   L G+    DK+
Sbjct: 199 NALLRFFNEFVDRSKDV----PEYRKDICKTIFKRIVGRAFISGKEANSLIGVFK--DKY 252

Query: 250 SR 251
            +
Sbjct: 253 PK 254


>gi|198244887|ref|YP_002218469.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197939403|gb|ACH76736.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 228

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTA +R  F    +P E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  RTLADALHDVDFTVATTACSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|297619714|ref|YP_003707819.1| TrmH family RNA methyltransferase [Methanococcus voltae A3]
 gi|297378691|gb|ADI36846.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus voltae
           A3]
          Length = 246

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 110/234 (47%), Gaps = 15/234 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-----DGWPSEKARSSSANADCVIDS 70
            +ILV+P+   N+G +AR M NF+   LR+V  +     +   +++A   + +A  ++++
Sbjct: 4   TVILVNPKYSGNLGAIARTMMNFDTYDLRIVQNKLGEKPETILNDEAFIRAVHAKEILEN 63

Query: 71  VRVFSNLKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            + +  L+EA  D+ ++ ATT      ++N  +  + P+E A    + I    N+ I+FG
Sbjct: 64  AKFYKTLEEASYDIDYLVATTGAVSIGDKNIKRVPMTPRELAE---KSISLKGNLAIVFG 120

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           RE  GL NE++ L + ++S P    +P +N+S AV ++++E    SI ++          
Sbjct: 121 REDDGLRNEDVELCDLLVSIPTCSNYPIMNLSHAVSVILYELYSISIGNAIPYDTNVKE- 179

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
           A+K +    L      +++        KK         +  R  +   E   L 
Sbjct: 180 ASKEDKDILLSIFNDFVDKS--LIQEHKKPICKTIFKRVISRAFVSGREANSLM 231


>gi|319779345|ref|YP_004130258.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109369|gb|ADU92115.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
          Length = 237

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLK 78
               G NIG  ARA+     + L + N +  +   ++ A + ++NA   + +V+V  NL 
Sbjct: 3   QTSHGGNIGSAARALKTMGFSNLTISNSKLKEIHSNKDAIAMASNAQDTLSAVKVKDNLN 62

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNEE 136
           EA++D++  +A TAR R +F+S+   ++ A V    +      N+ I+ G E+ GL N  
Sbjct: 63  EALSDINMAFALTARARRDFESI-DVRQMATVALNHLIESKNHNIAIVMGNEQSGLDNNS 121

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME---NSIVSSEKNVKEQNTPATKGELL 193
           +   N I+S P NP + SLN++QA+ +  WE      N + +   +V      AT G+  
Sbjct: 122 LYNFNYIVSIPANPEYSSLNVAQALQITAWELRYKYINQLNNINFDVSAIKDSATIGQCD 181

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             +  +   LE  GY    +K   ++     +  + ++ +E+V +  GI+  L+K
Sbjct: 182 YLIKTIIEKLESSGY--DKDKLNSIVLKTKHLLRKSQISKEDVQMFLGIIKHLEK 234


>gi|16767841|ref|NP_463456.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16423167|gb|AAL23415.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|312915692|dbj|BAJ39666.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 228

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 1/154 (0%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ VF
Sbjct: 3   VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVF 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+ D+ F  ATTAR+R  F    +  E   +L E+    ++  ++FGRE  GLTN
Sbjct: 62  HTLADALHDVDFTVATTARSRAKFHYYASHAELVPLLQEKSRWMRHAALVFGREDSGLTN 121

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E+AL++ +   P+   +PSLN+ QAV++  ++ 
Sbjct: 122 DELALADVLTGVPMAADYPSLNLGQAVMVYCYQL 155


>gi|254428520|ref|ZP_05042227.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
 gi|196194689|gb|EDX89648.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
          Length = 220

 Score =  194 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 17/234 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            V +LV+P  GENIG  ARA+      +LRLVNP D      A+  + +++ V++   + 
Sbjct: 3   IVFVLVEPARGENIGAAARAIKTMGFKELRLVNPGDM---RAAQWVAHHSNDVLEQAVIV 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +A+AD+    A TAR+R      +     A ++  +  S Q V I+FGRE  GLT 
Sbjct: 60  DTLDQALADVDLSIACTARHRLQKDRYVDADRCAELVAGKGNSVQRVAIVFGREASGLTG 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+A  +   S P+    PSLN+ QAV++  WE  +         V+ +  P T G    
Sbjct: 120 DEVARCDLASSIPLAQAQPSLNLGQAVMVYAWELRKR-----PATVQPEADPTTFGHTRQ 174

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            L  L  +L+     +P E   + +D+L  +         E+ L+R ++  + +
Sbjct: 175 ALHQLLAALQ----IQPTENLHQWVDELLPLA-----SDRELGLVRQLLRRIKR 219


>gi|219847182|ref|YP_002461615.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219541441|gb|ACL23179.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 235

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 3/237 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +G V+IL  PQ   NIG V RAM N    +LRLV P    P   A + +   D V+  +
Sbjct: 1   MEGIVVILHRPQDPRNIGAVVRAMLNTGFQRLRLVEPPPFDPDLIA-AVAHRPDPVLTRL 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + S+L +A AD+ ++  T+ R   N       ++ A+ L+ R      V ++FG E  G
Sbjct: 60  TIHSDLADATADIRYLVGTSDRPHLNLPWRNDVRQWAVELHRRATVAGPVALLFGPEDNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+ EE++  + II  P+NP +P+LN++QAVLL+++E  + +  S   +   +       +
Sbjct: 120 LSREELSRCHEIIGLPINPAYPTLNLAQAVLLILYELQQVTPPSPPPSPPAEPPA-DLAD 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                  L+  +    + +       +   L +I  R  L + +  +L  ++    +
Sbjct: 179 YDRLFTVLDELITATQFVKSG-NGMALRRRLRAIINRAGLSQRDAAVLTALLRAAVR 234


>gi|45357897|ref|NP_987454.1| TrmH family RNA methyltransferase [Methanococcus maripaludis S2]
 gi|45047457|emb|CAF29890.1| rRNA methyltransferase related protein [Methanococcus maripaludis
           S2]
          Length = 234

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 15/230 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NF++ +LR+V   +    ++A   + +A  ++++ + +S
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVGTPE-ILDDEAYIRAVHAKNILNNAKFYS 62

Query: 76  NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            L++AI+D+ F  ATT     +RN  +  + P+E A    +       +GI+FGRE  GL
Sbjct: 63  KLEDAISDIDFTVATTGAVCGDRNVNRVPITPRELA---KKHSSISGTLGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE- 191
            NE++ L + ++S P +  +P LN+S AV ++++E    S  S +         A+  E 
Sbjct: 120 KNEDVELCDILVSVPTSNKYPILNLSHAVSVILYEIYFESF-SKDIPYDLNMKNASVDEK 178

Query: 192 --LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
             LL F +      ++     P  +K         I  R  +  +E   L
Sbjct: 179 NALLRFFNEFVDRSKDV----PDYRKDICKTIFKRIVGRAFISGKEANSL 224


>gi|115375837|ref|ZP_01463088.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367147|gb|EAU66131.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 231

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 3/228 (1%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P+  EN+G  ARAM N  L++   V P        AR  + +A+ ++D VR   +L+ A
Sbjct: 2   RPRNAENLGAAARAMKNCGLSEWTWVRPEAEDLGP-ARRLAVHAEELLDGVRREDSLEAA 60

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +AD  ++  T++R     + +L P+     L  R   G  V I+FG ER GLTN E+   
Sbjct: 61  VADCVWVVGTSSRKVEGKRRLL-PRAVGEELVARAAQG-PVAIVFGDERSGLTNAEVERC 118

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200
           + + + P +P  PS+N++QAVLL  +E    S+ ++          A+  EL    + LE
Sbjct: 119 HDLSAVPTDPSQPSINLAQAVLLYAYEVRMASLAAAPPPPAPLPVAASDAELARVEETLE 178

Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
             L+  G+       +  L D+++   R  L   E  L    + TL K
Sbjct: 179 TLLKAGGFLVDPHAGRTGLRDVFAPLRRSRLTHHEARLWLAALHTLRK 226


>gi|150400087|ref|YP_001323854.1| RNA methyltransferase [Methanococcus vannielii SB]
 gi|150012790|gb|ABR55242.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           vannielii SB]
          Length = 234

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 9/227 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ILV+P+ G N+G +AR M NFN+++LR+V   D   ++ A   + +A  ++ + + + 
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFNVSELRIVGNSDILDND-AYIRAVHAKDILKNAKFYK 62

Query: 76  NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +L  A++D+    ATT     +RN  +  + P+E A   N++   G  +GI+FGRE  GL
Sbjct: 63  SLSNAVSDIDVTVATTGAVSGDRNIKRIPITPRELAK--NQKENEG-TLGIVFGREDDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            NE++ L + ++S P +  +P +N+S AV ++++E    S VSS+     +   A+K E 
Sbjct: 120 KNEDVELCDILVSVPTSEKYPIMNLSHAVSVILYEIYYES-VSSDIPYNLRMKNASKIEK 178

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
              L +    ++      P  +K+        I  R  +  +E   L
Sbjct: 179 EMLLRFFNEFVDISNAV-PEYRKEICKTIFKRIVGRAFISGKEANSL 224


>gi|15897647|ref|NP_342252.1| hypothetical protein SSO0747 [Sulfolobus solfataricus P2]
 gi|284174973|ref|ZP_06388942.1| hypothetical protein Ssol98_09996 [Sulfolobus solfataricus 98/2]
 gi|6015729|emb|CAB57556.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813914|gb|AAK41042.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602416|gb|ACX92019.1| tRNA/rRNA methyltransferase (SpoU) [Sulfolobus solfataricus 98/2]
          Length = 237

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 110/241 (45%), Gaps = 26/241 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   NIG VAR   NF + +L +VNPR      +A   SA    +++  ++ 
Sbjct: 2   IRVVLVEPEGEYNIGFVARLCKNFLVDELYIVNPRANI--SEAFRFSAGGREILEKAKIV 59

Query: 75  SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +   +AI D+    AT++    N +  +  + P E   ++      G+ + +IFGRE  G
Sbjct: 60  NTFDKAINDVDIKIATSSIADNNGDILRKSIRPWEILPLI-----QGKKIALIFGRESVG 114

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LT EEI   + ++  P NP +P LN+S AV ++++E  +N  + +       +   +   
Sbjct: 115 LTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLTNPQTSTISDQ-SIKL 173

Query: 192 LLSFLDYLEISLEERG-----YF----------RPVEKKKKMLDDLYSIFIRPELMREEV 236
           +  + + L   L+        Y           +  E+ + ++  L  ++ R     +E+
Sbjct: 174 IDKYTEILYKLLKRSDDDYKMYIALKRAIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEM 233

Query: 237 F 237
            
Sbjct: 234 N 234


>gi|110834589|ref|YP_693448.1| putative RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110647700|emb|CAL17176.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
           borkumensis SK2]
          Length = 223

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 10/218 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            V ILV+P  GENIG  ARA+     +QLRLVNP D      A   + +++ V++   + 
Sbjct: 3   IVFILVEPARGENIGAAARAIKTMGFSQLRLVNPGDMT---AAHWVAHHSNDVLEQAMIV 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L +A+ D+      TAR+R      +     A ++  +  S Q V I+FGRE  GLT 
Sbjct: 60  DSLAQALVDVDLSIGCTARHRLQKDRYVDADHCAALVAGKGNSVQRVAIVFGREASGLTG 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS---IVSSEKNVKEQNTPATKGE 191
           +E+ L +   S P+    PSLN++QAV++  WE  +     I   +         A   +
Sbjct: 120 DELGLCDLASSIPLAQQQPSLNLAQAVMIYAWELRKQPAVKITEPDPATFSHTRQAVHQQ 179

Query: 192 LLSFL----DYLEISLEERGYFRPVEKKKKMLDDLYSI 225
           L S      + L   ++E        +   +   L  +
Sbjct: 180 LASLHIQPNENLHQWVDELLPLANDRELGLVRQLLRRL 217


>gi|84489842|ref|YP_448074.1| rRNA methylase [Methanosphaera stadtmanae DSM 3091]
 gi|84373161|gb|ABC57431.1| predicted rRNA methylase [Methanosphaera stadtmanae DSM 3091]
          Length = 238

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 17/235 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V+P+   NIG +AR M NF L +L L+NP        A   + +A  ++    ++  L
Sbjct: 6   VFVEPKTSGNIGFLARTMKNFGLKKLVLINPCKLEND--AYYQAMHARELVQDAMIYDTL 63

Query: 78  KEAIAD--LHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +E I D  +  I  TT     ++   +  + P E    L + +    N+ ++FGRE  GL
Sbjct: 64  EEFIEDKKITSIVGTTGTAGGSYNIKRIPITPDE----LGKTMHVNGNIALLFGREGDGL 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            N+EI   + +++ P +  +P +NI+ A  ++ +E  +N       ++   +    K  L
Sbjct: 120 NNQEIEQCDILVTIPTSDEYPIMNITHAAAIIFYEIFKNKKSYPIDDMDISSYD-DKKVL 178

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
            +  + +   L+      P  K+K++   +  I  R  +   E   LRG +  ++
Sbjct: 179 TNLTNEIISKLD-----YPEHKEKQVKIIVKRIIGRAFIAGRESQTLRGTLKRIN 228


>gi|326570852|gb|EGE20876.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
          Length = 294

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 47/287 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++      I++V   L  NIG  ARA+    L  L +VNPR     + + +++A A  +
Sbjct: 6   LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
           +D   +  ++K AI D   I+A +AR+R   + VL P  AA V  +++            
Sbjct: 65  LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNNLATS 124

Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
                            + I+FGRE  GLTNEE++L++  I  P NP +P LN++ A+ +
Sbjct: 125 LDHMNQSADDLVDTLPKIAILFGREDRGLTNEELSLADYHIQIPANPDYPVLNVASAIQV 184

Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201
           +     +    +   +                        + + PA      + L+   I
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMTKEEYSLPIHIRSDWDEPAITQAQSASLERAII 244

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L +R      +  K + + L  +  R +L ++E  L+R +++ ++K
Sbjct: 245 ALMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINK 291


>gi|93006040|ref|YP_580477.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393718|gb|ABE74993.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 293

 Score =  191 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 40/275 (14%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +      + N      +++V+  L  NIG  ARAM    L++L +V+P+     + + S 
Sbjct: 9   LATAVSNVSNYLSCVQVVMVNTTLPANIGSAARAMHTMGLSRLTVVDPK-LPIDDTSVSH 67

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--------- 111
           +A    ++ S  +   L+ AIAD   ++A ++R+R+  + V+ P +AA ++         
Sbjct: 68  AAGGSDLLSSAIIAPTLESAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQST 127

Query: 112 ---NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV--- 165
               + I +  N+ I+FGRE  GLTNEE+A ++  +    NP +P LN++ AV ++    
Sbjct: 128 VNGQDGINTAPNIAILFGREDRGLTNEELAYADYHVQIDANPAYPVLNVASAVQVIASFI 187

Query: 166 W-----------------------ECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
           +                       E +E  ++++    +      T+ +L    +     
Sbjct: 188 YAYAQTHIQADSEVNDIAQVTDNLETLEQGMLNTYVRQQWDEPAITQQQLQLLTERTTAL 247

Query: 203 LEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
           + +R      E  K +   L  +  R +L ++E  
Sbjct: 248 MVQRK-LADSENLKSLPSRLSRLGSRIQLDQKEYQ 281


>gi|218960366|ref|YP_001740141.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729023|emb|CAO79934.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 278

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 22/230 (9%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +ILV+P  G N+G +AR M NF  + LR+V      P +     + +++ ++++V ++
Sbjct: 10  IAVILVEPIYGGNVGAIARIMHNFCFSDLRIVG---KVPEKNDFYLAMHSEEILENVNIY 66

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S L++AI  L  + A + R   N      P + A  +        N+G++FGRE +GLT+
Sbjct: 67  STLEDAINGLDRVIAFSRRLGKNKPVDFTPGQMAKYV--HSLPDSNIGLVFGRETYGLTD 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            E  L      F  NP FPSLN++QAV L +WE         +K  K  N+ A+  EL  
Sbjct: 125 SEAELCPLRCHFMANPSFPSLNLAQAVALALWEIYSLPWEEKQKGKKYYNS-ASGKELDE 183

Query: 195 FLDYLEISLEERGYFRPVE---------------KKKK-MLDDLYSIFIR 228
             +Y+   + + G+F+  E                  K ML  L  +F R
Sbjct: 184 IRNYILEVMRQCGFFQRRETINWDTFLAKMLAQLNPDKNMLYRLRQMFNR 233


>gi|308048484|ref|YP_003912050.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
 gi|307630674|gb|ADN74976.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
          Length = 226

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 15/238 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
               + ILV P  GEN+G  ARAM     ++LR+V   D   SE+A   +  +  +++  
Sbjct: 1   MAELIFILVSPARGENVGAAARAMKTMGFSRLRVVGS-DAHKSEQASWVAHGSGTILEEA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F+ L EA+AD+    ATTAR R + + +  P EAA  +     S   V ++FG E  G
Sbjct: 60  ESFATLAEALADVDLSLATTARRRGDKRRLHTPAEAAQQVRALGNSVNTVAVVFGCEESG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+NE++AL + + + P+   +PSLN+ QA++L  +E  +  +        E+   A  G+
Sbjct: 120 LSNEDLALVDLLTTIPLVNPYPSLNLGQAIMLYAYEFSQAEL--------EREACADAGQ 171

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKF 249
            ++     +  L++ G       ++   D L        L + +V +L  ++  ++K 
Sbjct: 172 FVALKQRSQALLDKLGVAEDEPLRRWAGDSL------GTLSQRDVAMLHLLIGDIEKA 223


>gi|163749011|ref|ZP_02156262.1| putative RNA methyltransferase [Shewanella benthica KT99]
 gi|161331387|gb|EDQ02275.1| putative RNA methyltransferase [Shewanella benthica KT99]
          Length = 229

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 6/192 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V +LV+P    N+G  ARA+      QL LVN  +    ++A   +  A  ++    V  
Sbjct: 4   VFVLVEPSRPANVGAAARAIKTMGFEQLILVNS-NLHLDKEAHWLAHGATDILAQTLVVD 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++ +  A    + ATTAR R   +  L P E    + +++ S + + ++FGRE  GL+N 
Sbjct: 63  SVADIRAQYDHLIATTARERGTPRQYLTPDELKDTVLQQLGSVKKIALLFGRESSGLSNS 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+ L +     P+   +PSLN++QAV++  +     ++      +K +   A +G+L + 
Sbjct: 123 ELELCDLFSYVPLINDYPSLNLAQAVMVYSY-----ALSEVNNRLKHKRVDAQEGQLQAL 177

Query: 196 LDYLEISLEERG 207
               +  L++  
Sbjct: 178 KKRTKTLLQQLD 189


>gi|323474724|gb|ADX85330.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           REY15A]
 gi|323477452|gb|ADX82690.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           HVE10/4]
          Length = 237

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 26/241 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   NIG VAR   NF++ +L +VNPR      +A   SA     ++  ++ 
Sbjct: 2   IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59

Query: 75  SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  EAI D+    AT++    N +  +  + P E   ++      G+ V ++FGRE  G
Sbjct: 60  NSFDEAINDVDIKIATSSIADNNGDILRKSIRPWELLSLI-----QGKKVALVFGRESVG 114

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LT EEI   + ++  P NP +P LN+S AV ++++E  +N  + +       +   +   
Sbjct: 115 LTREEIFRCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISDQ-SIKL 173

Query: 192 LLSFLDYLEISLEERG-----YF----------RPVEKKKKMLDDLYSIFIRPELMREEV 236
           +  + + L   L+        Y           +  E+ + ++  L  ++ R     +E+
Sbjct: 174 IDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEM 233

Query: 237 F 237
            
Sbjct: 234 N 234


>gi|227827666|ref|YP_002829446.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.14.25]
 gi|229584870|ref|YP_002843372.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.27]
 gi|238619837|ref|YP_002914663.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.4]
 gi|227459462|gb|ACP38148.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.14.25]
 gi|228019920|gb|ACP55327.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.27]
 gi|238380907|gb|ACR41995.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.4]
          Length = 237

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 26/241 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   NIG VAR   NF++ +L +VNPR      +A   SA     ++  ++ 
Sbjct: 2   IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59

Query: 75  SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  EAI D+    AT++    N +  +  + P E   ++      G+ V ++FGRE  G
Sbjct: 60  NSFDEAINDVDIKIATSSIADNNGDILRKSIRPWELLSLI-----QGKKVALVFGRESVG 114

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LT EEI   + ++  P NP +P LN+S AV ++++E  +N  + +       +   +   
Sbjct: 115 LTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISDQ-SIKL 173

Query: 192 LLSFLDYLEISLEERG-----YF----------RPVEKKKKMLDDLYSIFIRPELMREEV 236
           +  + + L   L+        Y           +  E+ + ++  L  ++ R     +E+
Sbjct: 174 IDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEM 233

Query: 237 F 237
            
Sbjct: 234 N 234


>gi|311696308|gb|ADP99181.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
          Length = 242

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 18/252 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV+P++ EN+G  ARA+      +L LVN  D     +A   +  +D ++D+ R+F 
Sbjct: 4   AFVLVEPKVPENVGAAARALCTMGFGELWLVNS-DLHTRPEAHWLAHGSDHILDNARIFP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L      +  +  T+A+ R+  +    P +   VL  +  S     ++FGRE  GL+NE
Sbjct: 63  DLAAVRNSVDLLMGTSAKTRHQRQDWHGPSDLRKVLATKGASVATAALVFGREDRGLSNE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL + +   P+   +PSLN++Q+V+L  WE    S     ++      PA    L + 
Sbjct: 123 ELALCDLLTGIPMKVTYPSLNLAQSVMLYAWEMSGLSDAMDIRH-----EPADDNRLGAL 177

Query: 196 LDYLEISLEERGYFRPVEKK--KKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS--R 251
              LE  L E     P E K  + + + L      P L   ++  +  + S +++    R
Sbjct: 178 RGRLETLLPELD--TPPEGKLSQWVFERL------PLLSDRDIGFVHTLCSNIERAVDCR 229

Query: 252 QSSRRNNVLLQK 263
             SR N+   Q 
Sbjct: 230 SQSRSNSKAEQD 241


>gi|124028494|ref|YP_001013814.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
 gi|123979188|gb|ABM81469.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
          Length = 239

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 16/235 (6%)

Query: 10  NSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
            S   P +  ++V  +   N+G +AR   NF + +  LV+P     S +AR  +AN   +
Sbjct: 2   QSLGPPRVRLVVVGVEGEINLGFIARLAANFAIDEFYLVSPVASPESSEARRFAANGVYM 61

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNR---NNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +D V V  +L+EA+  +     T+A+     +  +  + P+E A  +  R    ++V ++
Sbjct: 62  LDRVIVVDSLEEALKGVDLAVCTSAKIGQASDVLRHAVTPREFAEEIAPRY---ESVAVV 118

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FGRE  GLT +E+A  + ++  P NP +P LN+S AV ++++E       ++ +  K+ +
Sbjct: 119 FGRESVGLTRDELAKCHLLVHIPANPNYPVLNLSHAVAILLYELY-----NTRRGEKQLH 173

Query: 185 TPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
            PA    L    ++L    E+       E+  ++   L  I  R  +   E  +L
Sbjct: 174 EPARGETLERIYEHLSWLAEK---LVDRERVSQVKAALKHILWRCSITGGEASML 225


>gi|227830363|ref|YP_002832143.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.S.2.15]
 gi|229579181|ref|YP_002837579.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.G.57.14]
 gi|229582067|ref|YP_002840466.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.N.15.51]
 gi|284997869|ref|YP_003419636.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.D.8.5]
 gi|227456811|gb|ACP35498.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.S.2.15]
 gi|228009895|gb|ACP45657.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012783|gb|ACP48544.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.N.15.51]
 gi|284445764|gb|ADB87266.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.D.8.5]
          Length = 237

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 26/241 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   NIG VAR   NF++ +L +VNPR      +A   SA     ++  ++ 
Sbjct: 2   IRVVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRANV--SEAFKFSAGGKEFLEKAKIV 59

Query: 75  SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +N  EAI D+    AT++    N +  +  + P E   ++      G+ V ++FGRE  G
Sbjct: 60  NNFDEAINDVDIKIATSSIADNNGDILRKSIRPWELLSLI-----QGKKVALVFGRESVG 114

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LT EEI   + ++  P NP +P LN+S AV ++++E  +N  + +       +   +   
Sbjct: 115 LTREEIFKCDFLLYIPANPSYPVLNLSHAVGIVLYEIWKNRELLNNPQTSTISDQ-SIKL 173

Query: 192 LLSFLDYLEISLEERG-----YF----------RPVEKKKKMLDDLYSIFIRPELMREEV 236
           +  + + L   L+        Y           +  E+ + ++  L  ++ R     +E+
Sbjct: 174 IDRYAEILYKMLKRSDDDYKMYIALKRTIIKGVKDEEEARVIVHFLRKLYTRIIHNEKEM 233

Query: 237 F 237
            
Sbjct: 234 N 234


>gi|332796504|ref|YP_004458004.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
           W1]
 gi|332694239|gb|AEE93706.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
           W1]
          Length = 228

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 24/235 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P+   N+G VAR   NF + +L +V P+    S  A   SA  + ++ + ++  
Sbjct: 3   RVVLVEPEGEYNVGFVARLCKNFEVDELFIVRPKCDINS--AIKFSAKGESILRNAKIVD 60

Query: 76  NLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           N  +A+ D+    AT++      +  +  + P E   V+       + + +IFGRE  GL
Sbjct: 61  NYDDALKDVEIKIATSSIANNKGDILRKAVFPWELPSVMK-----SEKIALIFGRESVGL 115

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK--- 189
           T EEI+ ++ ++  P NP +P+LN+S AV ++++E  +       K  KE      K   
Sbjct: 116 TREEISKADFLLFIPANPNYPTLNLSHAVGIVLYEIWKAKHEIKPKITKESIDLLDKYSK 175

Query: 190 ---------GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
                     E       L+ +L +       E+ + ++  L  ++ R     +E
Sbjct: 176 ILYDLIKRSEEDYVLYIALKRALIKG--INDEEEARTVIKFLRRLYTRILHEDKE 228


>gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304]
 gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 226

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 114/237 (48%), Gaps = 13/237 (5%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+ ++ EN+G +AR   N+ + +L L   R    +E++  ++ANA  V+++  V  +L+
Sbjct: 2   LVELKIPENVGFIARVAKNYGIKRLCLYKCRV---TEESYHTAANAKDVLENAVVVEDLQ 58

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E +  ++ I  TT     ++K +   +  A      +  G  V ++FGRE +GL NEE+ 
Sbjct: 59  EFLQRMNLIVGTTGIPGGDYKYLRK-ELLAPEDLPSVAKG-RVAVLFGREDYGLYNEELE 116

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
           + + ++  P +  +P +N+S A  ++++   E       + V+E +  AT  ++   L  
Sbjct: 117 MCHVLVRVPTSEEYPVMNVSHAAAVILYFLREI------ERVQEDDEIATFRDIEVTLSN 170

Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
           L   L    Y  P  + K+ +     I  R  + + EV  L  I      + ++ +R
Sbjct: 171 LVEMLRMVQY--PEHRIKRTVVIFRRILGRAGVKKYEVHSLNAIFRKTVSYIKRMNR 225


>gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 240

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 13/239 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV  +   NIG VARAM NF    LRLVN     P  +ARS + NA  V+ + R F
Sbjct: 11  VAVVLVGARNPLNIGAVARAMSNFGFDDLRLVN-DYSIPLAEARS-AVNASHVLQAAREF 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ EA+AD   IY TTA      +    P +A   + E + +   + I+FG E+ GL+N
Sbjct: 69  GSVAEAVADCQLIYGTTAIGERKPEH---PVDALPDVLEHVGAD-KIAILFGSEKTGLSN 124

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           E ++    +++ P++    S+N+ QA  ++++E +  + V     V     PAT  +L  
Sbjct: 125 EALSHCQRLLTIPMSATNVSMNLGQAAAVILYELVRGNAV--PLRVSTDAAPATAEQLGL 182

Query: 195 FLDYLEISLEERGYF--RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
               L  +LEE  Y    P    +     L ++  R ++   +V +  G         R
Sbjct: 183 LDAVLREALEEADYMQRFPGNASEV---RLRALTRRLQMPGADVPIWLGFFRQFLWKIR 238


>gi|330836257|ref|YP_004410898.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748160|gb|AEC01516.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 257

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 107/237 (45%), Gaps = 11/237 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWPSEKARSSSAN 63
             +Q +     ++LV+PQ G NIG V RAM    L++L +     R  +  ++ R+ + +
Sbjct: 1   MNVQENLDRIRMVLVEPQDGANIGSVCRAMKTMGLSRLVIAGGKTRADYDDDRVRTLALH 60

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVG 122
           A  V ++     +L+ A+A        T R     K S + P + A  ++        V 
Sbjct: 61  AADVWENCVWEQSLESALATSILTVGATRRRGKYRKFSFINPSQLADRIS--STPAGPVS 118

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           I+FGRE  GLT++E+   + +++ P +  FPSLN++QAV ++ +   +       + V  
Sbjct: 119 IVFGREANGLTDDEVGQCSLVVTIPTSDAFPSLNLAQAVQIIAYSLYDRLKPWPVEGVPI 178

Query: 183 QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
               A +         +  +LE   +++  E+       L  +F+R  L   E+  L
Sbjct: 179 PQQRAEQAAWE-----ISETLERINFYKGTERV-WNHRFLRDVFVRACLSETEMQRL 229


>gi|220916347|ref|YP_002491651.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954201|gb|ACL64585.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 269

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 116/267 (43%), Gaps = 24/267 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADC------- 66
             ++L  PQ  +N+G  AR M NF L++L +V P   G P     + +  A         
Sbjct: 6   IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAVTARDDVLARAR 65

Query: 67  --------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                   ++D   +  +L+ AI    ++  TT+R     +  L P+  A  L  R   G
Sbjct: 66  RMARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSEQG 124

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + V ++FG ER GL++ E+ L  A+ + P    + S+N++QAV ++ +E    +  +   
Sbjct: 125 E-VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPAGAA 183

Query: 179 NVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
             +       + PA    + +     +  L   GY  P +  + +L D   +  R +  +
Sbjct: 184 PAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQ 242

Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVL 260
            EV LL G + +L++  R   R +   
Sbjct: 243 REVELLLGALRSLERALRLPPRGDGTA 269


>gi|254787763|ref|YP_003075192.1| RNA methyltransferase [Teredinibacter turnerae T7901]
 gi|237684601|gb|ACR11865.1| putative tRNA/rRNA methyltransferase LasT [Teredinibacter turnerae
           T7901]
          Length = 233

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 27/228 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            ILV+P    N+G  ARAM      QL LV   D    E+A   +  A  ++ S   + +
Sbjct: 4   FILVNPARPANVGAAARAMKTMGFKQLILVGS-DIHLDEEAHWVAHGAQDILTSATCYPD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L     D   +  TTAR R + +  L+P E    L+++       G++FG E  GL+N++
Sbjct: 63  LASLKPDFDLLIGTTARERGSARRYLSPPELNSQLSQQS---GRSGLVFGCEASGLSNDQ 119

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL +     P+   +PSLN+ QAV++  +     ++   +  +  ++      ++    
Sbjct: 120 LALCDLYSYIPLATPYPSLNLGQAVMVYSY-----ALSQLKSRIGLEDEAPDARQI---- 170

Query: 197 DYLEISLEERGYFRPVEKKK------KMLDDLYSIFIRPELMREEVFL 238
            +L+       +  P    K       +++ L        L   ++ +
Sbjct: 171 QHLKNR--AAEFLAPHTDSKTEKLSEWLMESL------ARLSDRDLRM 210


>gi|301429520|dbj|BAJ12139.1| tRNA (cytidine/uridine-2'/O-)-methyltransferase- like protein
           [Pseudomonas putida]
          Length = 141

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 4/139 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   AP L    +   ++LV+     NIG  ARAM N  L++L LV PR  +P  +A + 
Sbjct: 1   MCSRAPPL---LQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADAR 56

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  +++  +V + L++A+   + +  T+AR+R     +L P+E    + E    G  
Sbjct: 57  ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116

Query: 121 VGIIFGRERWGLTNEEIAL 139
           + ++FGRE  GLTNEE+  
Sbjct: 117 IALVFGREDSGLTNEELQR 135


>gi|117621440|ref|YP_857524.1| putative RNA methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562847|gb|ABK39795.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 230

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 12/236 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            +LV P    N+G  ARAM       +RLV  R     E+A   +  A  V+     F  
Sbjct: 5   FVLVAPARPANVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEVLTQAEAFDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+AD+  + ATTAR R  ++  L P E    +  +      V I+FG E  GL+NE+
Sbjct: 64  LEEALADMDLVVATTARQRGRYQHYLTPAEIRDQIKAKPSLD-KVAIVFGCEESGLSNEQ 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +A  + I   P+   +PSLN+ QA++L  +E   + ++   + + E    A  G++    
Sbjct: 123 LAQVDLISYLPLKVSYPSLNLGQAIMLYAYEL--SQLLDEPEVLAENVDNA--GQVRVLK 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
                 L + G  +  +  + ++D +      P L + ++ +L  +   L +   +
Sbjct: 179 SKTAEILGDLGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLARKLGK 228


>gi|197121584|ref|YP_002133535.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196171433|gb|ACG72406.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 269

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 24/267 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADC------- 66
             ++L  PQ  +N+G  AR M NF L++L +V P   G P     + +  A         
Sbjct: 6   IRLVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAITARDDVLARAR 65

Query: 67  --------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                   ++D   +  +L+ AI    ++  TT+R     +  L P+  A  L  R   G
Sbjct: 66  RMARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEG-RPWLEPRGLAAELVRRSADG 124

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + V ++FG ER GL++ E+ L  A+ + P    + S+N++QAV ++ +E    +      
Sbjct: 125 E-VAVVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVVAYEVARAAPPPGAA 183

Query: 179 NVKEQ-----NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
             +       + PA    + +     +  L   GY  P +  + +L D   +  R +  +
Sbjct: 184 PAEAPPGRGGDAPARIETVEALWARAQAVLGAAGYLNP-QNPEHILADFRRLLARADPTQ 242

Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVL 260
            EV LL G + +LD+  R   R +   
Sbjct: 243 REVELLLGALRSLDRVLRLPPRGDGTA 269


>gi|126465680|ref|YP_001040789.1| RNA methyltransferase [Staphylothermus marinus F1]
 gi|126014503|gb|ABN69881.1| RNA methyltransferase, TrmH family, group 1 [Staphylothermus
           marinus F1]
          Length = 231

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 12/237 (5%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV  +   N+G +AR   NF + +L LV P      E+A   +A A   +    + 
Sbjct: 3   VRVVLVGIEGSVNLGFIARTCVNFGVDELYLVKPAADL--EEALRYAAKASDYLKKAIIV 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L +AI D+  + ATTA+  +    V         +         + I+FGRE  GLT 
Sbjct: 61  DDLVDAIKDVDLVVATTAKGYSVGDVVRQAVPLRDFVEMVKGRVNRLAILFGRESTGLTR 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +E+  ++ +++ P NP +P LN+SQAV + +WE      V +E         A + E+  
Sbjct: 121 KELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWNIRGVRAENIPPS----AGRDEIEF 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL----LRGIVSTLD 247
            L  +    ++       EK  ++++    I  R  + + E  L    LR ++  L+
Sbjct: 177 ILKLIHDISKKV--LVKDEKVSRIMEIWKKIIYRSRISKYEARLLTYWLRKVLGKLE 231


>gi|332298868|ref|YP_004440790.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332181971|gb|AEE17659.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 251

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 23/259 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+L  P+   N+G V RAM N  + +LR+V  +  +  E+ R  + +A  + +    F
Sbjct: 6   ICIVLAHPEESRNVGAVCRAMANSGMKKLRIVGKKQDYDDERVRILAIHAAGIWERAEFF 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             + +A AD      TT R     K++ L P+E A        +       FG ER GLT
Sbjct: 66  ETITQATADCPLSAGTTRRKGKKRKNMLLLPEEFARQAAAVPGAAVV----FGNERTGLT 121

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           +EE+A     ++ P +  F SLN+S AV ++ +     +     +      TP     L 
Sbjct: 122 DEELAECTVGVTIPSHESFASLNLSHAVQIICYTLFRAA-----RTRSPGYTPVPLDRLD 176

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDL-YSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
           + +  +   L + G+F    +    ++    SI  R  L   E          ++K   +
Sbjct: 177 AAVGTIADDLRKIGFFSVTGRAD--MERFWRSILARAALSEGE-------CRYIEKIFDK 227

Query: 253 SSR---RNNVLLQKTEKSE 268
           ++    +N       +K+E
Sbjct: 228 AAGLASKNGASEPADQKAE 246


>gi|301429526|dbj|BAJ12142.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein
           [Pseudomonas putida]
          Length = 135

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 4/139 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   AP L    +   ++LV+     NIG  ARAM N  L++L LV PR  +P  +A + 
Sbjct: 1   MCSRAPPL---LQKIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADAR 56

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  +++  +V + L++A+   + +  T+AR+R     +L P+E    + E    G  
Sbjct: 57  ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116

Query: 121 VGIIFGRERWGLTNEEIAL 139
           + ++FGRE  GLTNEE+  
Sbjct: 117 IALVFGREDSGLTNEELQR 135


>gi|163849091|ref|YP_001637135.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222527064|ref|YP_002571535.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163670380|gb|ABY36746.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450943|gb|ACM55209.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 239

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 3/242 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
               ++IL  P+   NIG V RAM N     LRLV+P   +      + +   D V+ ++
Sbjct: 1   MNDIIVILHQPRDPRNIGAVVRAMLNTGCHHLRLVDP-CPFDPATISAVAHRPDPVLANL 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V ++L EAIAD+ ++  T+ R           ++ A    +R  S   V I+FG E  G
Sbjct: 60  TVHAHLSEAIADIRYLVGTSDRPHPGLPWRNDVRQWANETRQRAASTGPVAILFGSEGNG 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L+ +E+ L   I+  P+   +P LN++QAVLL+++E  +               PAT   
Sbjct: 120 LSRDELVLCQEILGLPMASDYPVLNLAQAVLLVLYEL-QQVTTPLAPPPPPGEPPATLAA 178

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             S    +   +    + +     + +   L +I  R +L   +  +L  ++  + +   
Sbjct: 179 RESLYTAVADLISTTNFVKSGT-GQALHQRLRTIIARADLSERDAAVLTALLREVLRKLE 237

Query: 252 QS 253
           + 
Sbjct: 238 RR 239


>gi|326560770|gb|EGE11137.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
 gi|326574402|gb|EGE24344.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
          Length = 294

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++      I++V   L  NIG  ARA+    L  L +VNPR     + + +++A A  +
Sbjct: 6   LKSWLSHIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
           +D   +  ++K AI D   I+A +AR+R   + VL P  AA V  +++            
Sbjct: 65  LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124

Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
                            + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+ +
Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184

Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201
           +     +    +   +                        + + PA      + L+   I
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L +R      +  K + + L  +  R +L ++E  L+R +++ +++
Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291


>gi|71065736|ref|YP_264463.1| rRNA methyltransferase SpoU family protein [Psychrobacter arcticus
           273-4]
 gi|71038721|gb|AAZ19029.1| possible rRNA methyltransferase SpoU family protein [Psychrobacter
           arcticus 273-4]
          Length = 298

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 121/280 (43%), Gaps = 39/280 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            + +      +++V+  L  NIG  ARAM    L++L +V P+       + S +A    
Sbjct: 19  TVSDYLSSIQVVMVNTTLPANIGSAARAMHTMGLSRLTVVEPK-LPIDATSVSHAAGGSD 77

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI----------- 115
           ++ S  +   L+ AIAD   ++A ++R+R+  + V+ P +AA ++ + I           
Sbjct: 78  LLSSAIIAPTLEAAIADCQLVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSAINERND 137

Query: 116 -FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             +  N+ I+FGRE  GLTNEE+A ++  I    NP +P LN++ AV ++       +  
Sbjct: 138 VNTAPNIAILFGREDRGLTNEELAYADYHIQIDANPAYPVLNVASAVQVIASFIFAYAQT 197

Query: 175 SSEKNVKEQNTPATKGE-LLSFLDYLEISLEERGYFRPV--------------------- 212
             + N +  N P    + L +    +  +   + +  P                      
Sbjct: 198 HIKANSEANNNPLEVTDSLETLGQPMLNTYTRQQWDEPAITQQQLQQLTERTTALMVQHK 257

Query: 213 ----EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               E  K +   L  +  R +L ++E  L+  +++ L K
Sbjct: 258 LADSENLKSLPSRLSRLGSRIQLDQKEYQLISALIAKLAK 297


>gi|326559242|gb|EGE09673.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
          Length = 294

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++      I++V   L  NIG  ARA+    L  L +VNPR     + + +++A A  +
Sbjct: 6   LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
           +D   +  ++K AI D   I+A +AR+R   + VL P  AA V  +++            
Sbjct: 65  LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124

Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
                            + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+ +
Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184

Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201
           +     +    +   +                        + + PA      + L+   I
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L +R      +  K + + L  +  R +L ++E  L+R +++ +++
Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291


>gi|326569633|gb|EGE19685.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
          Length = 294

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++      I++V   L  NIG  ARA+    L  L +VNPR     + + +++A A  +
Sbjct: 6   LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
           +D   +  ++K AI D   I+A +AR+R   + VL P  AA V  +++            
Sbjct: 65  LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124

Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
                            + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+ +
Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184

Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201
           +     +    +   +                        + + PA      + L+   I
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L +R      +  K + + L  +  R +L ++E  L+R +++ +++
Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291


>gi|301429516|dbj|BAJ12137.1| tRNA (cytidine/uridine-2'-O-) methyltransferase trmJ-like protein
           [Pseudomonas putida]
          Length = 133

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   AP L    +   ++LV+     NIG  ARAM N  L++L LV PR  +P  +A + 
Sbjct: 1   MCSRAPPL---LQNIRVVLVNTSHPGNIGGTARAMKNMGLSRLVLVEPR-LFPHHEADAR 56

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A  +++  +V + L++A+   + +  T+AR+R     +L P+E    + E    G  
Sbjct: 57  ASGAGDILEKAQVVATLEDALVGCNLVLGTSARDRRIPWPLLDPRECGTKVVEEAGQGAE 116

Query: 121 VGIIFGRERWGLTNEEI 137
           + ++FGRE  GLTNEE+
Sbjct: 117 IALVFGREDSGLTNEEL 133


>gi|326559881|gb|EGE10281.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
          Length = 294

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++      I++V   L  NIG  ARA+    L  L +VNPR     + + +++A A  +
Sbjct: 6   LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
           +D   +  ++K AI D   I+A +AR+R   + VL P  AA V  +++            
Sbjct: 65  LDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124

Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
                            + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+ +
Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184

Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201
           +     +    +   +                        + + PA      + L+   I
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L +R      +  K + + L  +  R +L ++E  L+R +++ +++
Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291


>gi|120556563|ref|YP_960914.1| putative RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120326412|gb|ABM20727.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
           VT8]
          Length = 226

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 3/190 (1%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
             +LV+P++ EN+G  ARA+     ++L LVN  D     +A   +  +D ++D+ R+F 
Sbjct: 4   AFVLVEPKVPENVGAAARALCTMGFSELWLVNS-DLHTRPEAHWLAHGSDHILDNARIFP 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L         +  T+A+ R++ +    P     VL  +  S     ++FGRE  GL NE
Sbjct: 63  DLAAVRNSADLLMGTSAKPRHHRQDWHEPGALRSVLANKGGSVATAALVFGREDRGLANE 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           E+AL + +  FP+   +PSLN+SQAV+L  WE   + +     +  E  + A+ G L   
Sbjct: 123 ELALCDLLTGFPMAVSYPSLNLSQAVMLYAWEL--SGLARQSNSTPEVASDASLGALRQR 180

Query: 196 LDYLEISLEE 205
           L+ L  +LE 
Sbjct: 181 LETLLPALEA 190


>gi|296113398|ref|YP_003627336.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295921092|gb|ADG61443.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326570114|gb|EGE20159.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
          Length = 294

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++      I++V   L  NIG  ARA+    L  L +VNPR     + + +++A A  +
Sbjct: 6   LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
           +D   +  ++K AI D   I+A +AR+R   + VL P  AA V  +++            
Sbjct: 65  LDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124

Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
                            + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+ +
Sbjct: 125 LDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184

Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201
           +     +    +   +                        + + PA      + L+   I
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L +R      +  K + + L  +  R +L ++E  L+R +++ +++
Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291


>gi|326576005|gb|EGE25928.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
 gi|326576417|gb|EGE26326.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
          Length = 294

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 47/287 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++      I++V   L  NIG  ARA+    L  L +VNPR     + + +++A A  +
Sbjct: 6   LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
           +D   +  ++K AI D   I+A +AR+R   + VL P  AA V  +++            
Sbjct: 65  LDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKNTLATS 124

Query: 119 ---------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
                            + I+FGRE  GLTNEE++L++  I  P N  +P LN++ A+ +
Sbjct: 125 LDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVASAIQV 184

Query: 164 MVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFLDYLEI 201
           +     +    +   +                        + + PA      + L+   I
Sbjct: 185 ITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANLESAII 244

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +L +R      +  K + + L  +  R +L ++E  L+R +++ +++
Sbjct: 245 TLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 291


>gi|158333940|ref|YP_001515112.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304181|gb|ABW25798.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 243

 Score =  181 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            ILV+ ++ EN+G  ARA+     T LRLV PR    SEKA+  +  +  V+ +  ++ N
Sbjct: 5   FILVESEVPENLGAAARALNTMGHTDLRLVRPRCDRNSEKAQVLAHGSQAVLSAAPIYQN 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +A+ D+ F  ATTAR+R      ++ +E    L  +  + Q V  +FG ER GL   +
Sbjct: 65  LSDALHDIDFACATTARHRYEKYQYISVREVPQRLQAKGETLQQVAFVFGGERSGLNRHD 124

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           I   + I + P    +PSLN++QAV++  +   E+++   ++ +     P  +       
Sbjct: 125 IDCCDLITTIPQGNPYPSLNLAQAVMVYSFMLSESAVHIKDQRLNRTPMPPLE------Y 178

Query: 197 DYL-EISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
             L   SL+        E+ +K +           L  E+++LL  I + +D+       
Sbjct: 179 ANLKHSSLQLMERIGLAERYQKYVTR-----GLARLGTEDLYLLHNIRACIDRTLDHLEA 233

Query: 256 RNN 258
           +  
Sbjct: 234 KQG 236


>gi|145299949|ref|YP_001142790.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852721|gb|ABO91042.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 230

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 12/232 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            +LV P    N+G  ARAM       +RLV  R     E+A   +  A  ++     F  
Sbjct: 5   FVLVAPARAPNVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEILTQAEAFDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+  + ATTAR R  ++  L P E    +  +  S   V I+FG E  GL+NE+
Sbjct: 64  LPEALADMDLVIATTARQRGRYQHYLTPGEIRDQIRAKP-SLNKVAIVFGCEESGLSNEQ 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +A ++ +   P+   +PSLN+ QA++L  +E   + ++   + V E     + G++    
Sbjct: 123 LAHADLLSYLPLKVSYPSLNLGQAIMLYAYE--MSQLLDEPQAVAENFD--SVGQVRVLK 178

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                 L E G  +  +  + ++D +      P L + ++ +L  +   L +
Sbjct: 179 HKTAEILGELGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLAR 224


>gi|224368391|ref|YP_002602554.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
 gi|223691107|gb|ACN14390.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 7/226 (3%)

Query: 37  NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRN 96
           N  L QL +V P D   +   ++++ +A  ++D + + S L +A+A   ++  TTAR   
Sbjct: 2   NMGLDQLVVVAPDDFDRTRAEKTATHSAASILDRMEICSTLSQALAPFEYVVGTTARLGG 61

Query: 97  NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
             + V +P+  A+ +   +     V ++FG E  GLTN EI   +A+I+ P    F SLN
Sbjct: 62  Q-RLVESPRTVALRV-ATLCENNRVALLFGPEDRGLTNGEICFCHALINIPTLG-FSSLN 118

Query: 157 ISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGELLSFLDYLEISLEERGYFRPVE 213
           ++QAV+++ +E +          ++++      AT  EL      L + L E GY  P E
Sbjct: 119 LAQAVVIVCYELLVAVEHQQGLPLEKKQVVPRLATVSELEIMYQRLSLVLAEIGYVNP-E 177

Query: 214 KKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRRNNV 259
                L+ +     R ++   E  +++G++  +  +     +R   
Sbjct: 178 NPDFWLNRVRQFLSRIKIQAGETGIVKGVIDRIVAYGESRYQRGQT 223


>gi|23008544|ref|ZP_00049946.1| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 155

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/143 (51%), Positives = 102/143 (71%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              PV+ILV+PQL ENIGM ARAM NF L++LRLV P++GWP +  R +++ A  V+D+ 
Sbjct: 1   MSAPVVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDAA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V++ + EAIADLH + ATTAR R   K V AP+EA      RI  G+ VG++FGRER G
Sbjct: 61  TVYATVPEAIADLHHLLATTARERGQMKRVFAPEEAMTATAGRIGRGERVGLMFGRERVG 120

Query: 132 LTNEEIALSNAIISFPVNPLFPS 154
           L+N+E++L++AI++FPV   FP 
Sbjct: 121 LSNDEVSLADAIVTFPVTEEFPV 143


>gi|330830514|ref|YP_004393466.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328805650|gb|AEB50849.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas veronii
           B565]
          Length = 234

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 9/233 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            +LV P    N+G  ARAM       +RLV  R     E+A   +  A  ++     F  
Sbjct: 5   FVLVAPARPANVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEILTQAEAFDT 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L EA+AD+  + ATTAR R  ++  L P E    +  +  S   V I+FG E  GL+NE+
Sbjct: 64  LPEALADMDLVIATTARERGRYQHYLTPGEIREQIRSKP-SLNKVAIVFGCEESGLSNEQ 122

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME-NSIVSSEKNVKEQNTPATKGELLSF 195
           +A  + I   P+   +PSLN+ QA++L  +E  +    ++++            G++   
Sbjct: 123 LAEVDLISYLPLKVSYPSLNLGQAIMLYAYEMSQLMDELNADGGAAVAENFDNAGQVRVL 182

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
                  L E G  +  +  + ++D +      P L + ++ +L  +   L +
Sbjct: 183 KSKTAELLGELGVSQDEKLHQWVMDRV------PMLPQRDLNMLHLLCKDLAR 229


>gi|297526044|ref|YP_003668068.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
           12710]
 gi|297254960|gb|ADI31169.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
           12710]
          Length = 231

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 18/240 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV  +   N+G +AR   NF++ +L LV P       +A   +A A   +    + 
Sbjct: 3   VRVVLVGVEGSVNLGFIARTCVNFSVDELYLVKPAADL--GEALRYAAKARDYLKKAIIV 60

Query: 75  SNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L +AI D+  + ATTA+     +  +  +  K+ A ++  R+     + I+FGRE  G
Sbjct: 61  DDLADAIRDVDLVVATTAKGYSVGDVVRQAVPLKDFADMIRGRV---NRLAILFGRESTG 117

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           LT +E+  ++ +++ P NP +P LN+SQAV + +WE      + +E        PA K E
Sbjct: 118 LTRKELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWNIKGIRAENIPP----PAEKEE 173

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFL----LRGIVSTLD 247
           +   L  +     +       EK  ++++    I  R  + + E  L    LR ++  L+
Sbjct: 174 IEFVLKLIHDISSKV--LVKDEKVLRIMEIWKKIIYRSRISKYEARLLTYWLRKVLGRLE 231


>gi|296241772|ref|YP_003649259.1| tRNA/rRNA methyltransferase [Thermosphaera aggregans DSM 11486]
 gi|296094356|gb|ADG90307.1| tRNA/rRNA methyltransferase (SpoU) [Thermosphaera aggregans DSM
           11486]
          Length = 232

 Score =  179 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV  +   N+G+++R   NF + +L LVNP      ++A   SA     ++   V 
Sbjct: 2   IRVVLVGIEGAYNLGVISRTCVNFEVDELYLVNPSASI--KEALIYSAKGKSFLEKAVVV 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L EA+  +    AT+A+  +    +    +     ++       + ++FGRE  GLT 
Sbjct: 60  DSLDEALKGVDASVATSAKGYSPGDVLRQAIDIETFTSQIAPRIGKLALVFGRESTGLTR 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE++ ++ ++S P NP +P LN+SQAV + +WE  +       K      +PA + E+ S
Sbjct: 120 EELSKTDFLVSIPGNPEYPVLNVSQAVAIFLWELWKIR----GKQPSNIASPAPREEIES 175

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
            +  +             EK +++      I  R      E  +L
Sbjct: 176 LIALVTNISSAI--IATPEKARRIGLVWKRILHRARPTAYEARVL 218


>gi|319943416|ref|ZP_08017698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
           mirabilis ATCC 51599]
 gi|319743231|gb|EFV95636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
           mirabilis ATCC 51599]
          Length = 324

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 104/288 (36%), Gaps = 53/288 (18%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
             +LV P L  NIG   RA+    +  L +V PRD    E A + +  A       +V  
Sbjct: 38  RFVLVSPSLSANIGSAVRALTTMGIPDLMVVAPRDAAFREDAGALALAAGAEARLAQVGS 97

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWG 131
             +L  A+AD     A +A  R        P      +   + +GQ   V  +FG ER G
Sbjct: 98  RPSLDAALADCQLAVAVSAEGREFGPPPAFPGPLCAEVLGMLSAGQVQRVAFVFGTERTG 157

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV----------------- 174
           L   E+A     ++ P +  + SLN++QAV ++ +      +                  
Sbjct: 158 LGTAEMARCQRWLTIPADADYSSLNLAQAVQIVAFSLRRAVLEREAARVMTRGESASGGA 217

Query: 175 -------------------------------SSEKNVKEQNTPATKGELLSFLDYLEISL 203
                                             + ++     A  G +   + + E SL
Sbjct: 218 PSAELARAVDGYPTDVCGREDAASPAAGVRHDGSRGLRSGERLADLGAVEGLVRHAESSL 277

Query: 204 EERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
              G   P  + ++++  L  +F R  L   EV LLRGI   +D+ ++
Sbjct: 278 AALGTLDPA-RPRRLMARLRHLFGRTSLTAAEVDLLRGICRDIDRRTK 324


>gi|254424557|ref|ZP_05038275.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196192046|gb|EDX87010.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 238

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 4/187 (2%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            +LV+P    NIG  ARA+     T LRLV P+    S  AR+ +  ++ ++++   + +
Sbjct: 6   FVLVEPGEAGNIGAAARAINTMGYTDLRLVRPKADHLSGIARAMAHGSEHILENAPQYED 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+  +    A+TAR+R      ++ ++   +L  +      V I+FG ER GL+N++
Sbjct: 66  LAGALDGIDLACASTARHRMQKYHYVSVRDLPDLLEAKGHLVSTVAIVFGSERSGLSNQD 125

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           I   + + + P     PSLN++QAV++  +   ++       + +      +  +     
Sbjct: 126 IQTCDLVTTIPQITPQPSLNLAQAVMIYSFMLSQSQTQVQIADQRLNRDSVSTEQ----Y 181

Query: 197 DYLEISL 203
            +L+ +L
Sbjct: 182 AHLKSAL 188


>gi|108759067|ref|YP_630311.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108462947|gb|ABF88132.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 243

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 117/244 (47%), Gaps = 5/244 (2%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
             +   ++L   +  +N+G VAR M NF  ++L L  P      E A   +  +D V+  
Sbjct: 3   PGEQLTVVLHQTRSTDNLGAVARIMANFGYSRLILSEP-VLKSIEGAERLAVKSDFVLRG 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + V S+L EA+ D  +   TT+R +   ++VL P+EA   L E    G  V ++FG E+ 
Sbjct: 62  MEVTSDLGEALKDCVYAVGTTSRTQLKGRTVLTPEEAMQRLAEESVRG-RVALVFGGEQR 120

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           G+++E++A    +++ P + + PS+N++Q+  ++++ C    +  +     E+   A  G
Sbjct: 121 GMSDEDLARCTDVLAIPTSAVQPSMNLAQSSAVLLYLCHRQGL--TPTAAVEEAPGAKLG 178

Query: 191 ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFS 250
            L +    +   +    +  P +  + +L++L    +R  L + E  L       L++  
Sbjct: 179 TLGALAKRMRDVMLRAEFLNP-QAPQHVLNELEQTLMRARLTQREAELWLTAFKHLERAV 237

Query: 251 RQSS 254
            + +
Sbjct: 238 TRGA 241


>gi|323159303|gb|EFZ45289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein
           [Escherichia coli E128010]
          Length = 148

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 4/139 (2%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +   V ++FGRER GLTNEE+   +  ++   NP + SLN++ AV ++ +E     + +
Sbjct: 6   AANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAT 65

Query: 176 S---EKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELM 232
               E+   E+       +L  F  +LE +L   G+ R      ++++ L  +F R    
Sbjct: 66  QENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIR-ENHPGQVMNKLRRLFTRARPE 124

Query: 233 REEVFLLRGIVSTLDKFSR 251
            +E+ +LRGI++++++ ++
Sbjct: 125 SQELNILRGILASIEQQNK 143


>gi|270346815|pdb|3KTY|A Chain A, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
 gi|270346816|pdb|3KTY|B Chain B, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
 gi|270346817|pdb|3KTY|C Chain C, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
          Length = 173

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVR 72
              I   P    N+G  ARA+      +L LV PR  D     +A + ++ A  V++   
Sbjct: 11  VRFIXTQPSHPGNVGSAARAIKTXGFGELVLVAPRFPDXTAQPEAVALASGALDVLERAA 70

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERW 130
           V   L+EA+A +   +A T R R+        +EAA +    +       V I+ G ER 
Sbjct: 71  VHDTLEEALAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERA 130

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           GLTN +I L + I   P NP + SLN++QA+ L  WE     +
Sbjct: 131 GLTNAQIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALL 173


>gi|167044726|gb|ABZ09396.1| putative SpoU rRNA methylase family protein [uncultured marine
           microorganism HF4000_APKG7N23]
          Length = 209

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 8/217 (3%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M NF +  L LV   +        + S +   +++++  F  L+EA+AD     AT+   
Sbjct: 1   MVNFGIDDLALVKGCEIDDDG--YARSKSGKPILENLSRFDTLEEALADCDVAIATSGIK 58

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
               K      ++   L + I   +   +IFGRE +GL   E+AL    I+ P NP FP 
Sbjct: 59  PEGDKRWFRAPKSIKELPDLIKEREKPALIFGRENYGLYRGELALCEVTITIPTNPKFPI 118

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
           LN+S AV ++++E              ++    +  E    +D +   LEE  Y  P  +
Sbjct: 119 LNLSHAVGIVLYEIYR----DGNHKNPKKRKAVSNEEFERLVDRIMDLLEETSY--PRRR 172

Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
             +    L  +  R      E   L GI   + +  R
Sbjct: 173 LDRSRTTLRRLISRGNPDEGEYENLMGIFKAIKEGKR 209


>gi|218884714|ref|YP_002429096.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
 gi|218766330|gb|ACL11729.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
          Length = 234

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 12/227 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+LV  +   N+G++AR   NFN+ +L +V P      E+A + +A     +   RV  
Sbjct: 3   RIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVASI--EEALNYAARGKDFLLKARVTD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L EAI  +  + AT+    +    +    +      +     ++V I+FGRE  GLT E
Sbjct: 61  SLDEAIKGVDMVAATSDEGYSAGDMLRQAVDLNGFAEKIFPRTRSVAILFGRESTGLTRE 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           EI+ ++ +++ P NP +P+LNISQAV +++WE  +   +++          A+K  L   
Sbjct: 121 EISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRSITATNIPP----LASKETLRQL 176

Query: 196 LDYLEISLEERGYFRPVEKKKKMLDDL--YSIFIRPELMREEVFLLR 240
           LD       E        ++K     +    I  +  L  +E  LLR
Sbjct: 177 LD----LTVEISKLVMTTEEKITRSRILWRRILGKALLTEKEAALLR 219


>gi|261417472|ref|YP_003251155.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373928|gb|ACX76673.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327174|gb|ADL26375.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 269

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 19/239 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++LV+P+   N+G VARAM  + L +L +V P+     +K+  ++AN+  ++D+ +V  
Sbjct: 5   RVVLVEPEHPHNVGFVARAMHCYALPELYIVYPKRDKVLDKSYHTAANSHDILDNAKVVH 64

Query: 76  NLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             ++AI D     A + R   ++ K  +        L++ +     + ++FGRE  GL  
Sbjct: 65  KFEDAIGDCSCAVAYSRRIFASSIKHTMV-----QNLSDMLPEDGTIALVFGRESCGLAL 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT-------PA 187
           EE+         PV P   SLN+ QAV + ++E   +  +++ +   ++ T       PA
Sbjct: 120 EEVNACTYQCEIPV-PGLMSLNLGQAVSISLYELCRSGALANGEGRAKRTTRGVAETGPA 178

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           T  ++  F  +L+  L   G +     +   L+ L     R    R E+  L G++  L
Sbjct: 179 TIQQIDGFKKFLDRYL--TGQYHDQAWRDSFLNTL---LQRLHPTRNELSALFGLLRNL 232


>gi|15920666|ref|NP_376335.1| hypothetical protein ST0454 [Sulfolobus tokodaii str. 7]
 gi|15621449|dbj|BAB65444.1| 227aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 227

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 111/235 (47%), Gaps = 26/235 (11%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +++V+P+   N+G ++R   NF + +L +VNP      E+A+  SA     ++  ++ 
Sbjct: 2   IRLVIVEPEGSYNLGFISRLAKNFLVDELYIVNPHCDL--EEAKKFSAKGLEYLEKAKIV 59

Query: 75  SNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +N  EAI D+    AT++      +  +  + P E       RI  G+ V +IFGRE  G
Sbjct: 60  NNFDEAIKDVELKIATSSIADIKGDILRKSIRPWELP-----RIIEGKKVALIFGRESVG 114

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK-- 189
           LT EEIA S+ ++  P NP +P LN+S AV ++++E  ++   +      E  +   K  
Sbjct: 115 LTREEIAKSDLLLFIPGNPEYPVLNLSHAVGIVLYEIWKSRGENKPVISGEAISLIDKYS 174

Query: 190 ----------GELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
                         +    L+ +L +       E+ + ++  L  ++I+  L R+
Sbjct: 175 RDLVNLIKSNEGDEAMYIALKRALIKG--IGDEEEARTIIRLLRKLYIK--LTRK 225


>gi|94969144|ref|YP_591192.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551194|gb|ABF41118.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 239

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 10/179 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV  +   NIG  ARAM NF +  LR+VNP D  PS +   S+  A+ ++ +   F +
Sbjct: 11  VVLVATRNPLNIGAAARAMSNFGVMHLRVVNPFD--PSFREAQSAVGAEELLRNAEQFGS 68

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + EA+AD   +  TTA R+R     + A  +AA ++ E       V ++FG E+ GL+NE
Sbjct: 69  VAEAVADCSLVVGTTAARDRELQHPMHALTQAAPLIREHS---GKVAVLFGSEKRGLSNE 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           +++  + ++  P      S+N+ QAV + ++E    S   ++     +   AT G+L  
Sbjct: 126 DLSHCHWLMHIPTRTEHLSMNLGQAVAVCMYEIARTSSTIADM----EQRRATAGDLEG 180


>gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
 gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
          Length = 225

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             IILV P+   NIG  ARAM NF L+ LR+       P+ +   ++  A+ ++   ++F
Sbjct: 2   ITIILVKPRNPNNIGASARAMANFGLSDLRIAG--AHIPNLEEAQAAVGAEDLLKKAKIF 59

Query: 75  SNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            NL++A+AD +F +A T+ +NRN  K +++       +N  I  G  + ++FG E+ GL+
Sbjct: 60  DNLQDALADCNFAFAATSLKNRNTQKEIVS----LPNINNHIKRG-KIAVVFGSEKTGLS 114

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            ++I L +A+++ P     PS+N++QAV L+ +E  +     + K  +++    +  ++ 
Sbjct: 115 VKDIELCDAVLNIPTTTKQPSVNLAQAVNLVCYETAKTKNFKTLK--QQKTNLPSFKDID 172

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
                +    + + + + + K  + L  + +I     L ++++F+++  +
Sbjct: 173 LLTADILELFDRKEFKKELTKTDRELL-IKNILKSSSLSKKQLFIIKKFL 221


>gi|330835848|ref|YP_004410576.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
 gi|329567987|gb|AEB96092.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
          Length = 232

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 94/164 (57%), Gaps = 10/164 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             +ILV+P+   N+G +AR   NF++ QL +VNP+     +KA+  SA  +  ++  +V 
Sbjct: 2   IRVILVEPEGEYNVGFIARLCKNFDVDQLYIVNPKCDL--DKAKQFSAKGNTFLERAKVV 59

Query: 75  SNLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             L++AI DL    +T++      +  +  +AP E + ++  R      VG++FGRE  G
Sbjct: 60  DKLEDAIEDLDLKISTSSIADSKGDMLRKSMAPWEISSLIGRR-----QVGLVFGRESVG 114

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           LT EEIA+++ ++  P N  +P LN+S AV ++++E  ++ +  
Sbjct: 115 LTREEIAMTDIMVFIPANRDYPVLNLSHAVSIILYELWKSKVNE 158


>gi|289804368|ref|ZP_06534997.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 125

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L EA+A    +  T+AR+R     +L P+E  +           V ++FGRER G
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAA-NTPVALVFGRERVG 119

Query: 132 LTNEEI 137
           LTN+E+
Sbjct: 120 LTNDEL 125


>gi|255514101|gb|EET90364.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 234

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 111/231 (48%), Gaps = 11/231 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            K   +  V+P+   N+G  AR + NF + ++ LVNP+  +  + A   S +A  +I++ 
Sbjct: 2   IKNIKVAFVEPRYQINLGYEARVLKNFEIRKMYLVNPKCKFNGKNAIKYSKHAHDLIENA 61

Query: 72  RVFSNLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  +L     +  F+  TTA   ++R  F +V+   E    +  +    +N+ ++ GR+
Sbjct: 62  AILKDLNGVTRN-SFVVGTTALWRKSRKYFDNVMTLPEFEEYIRGKSI--ENMTLLIGRD 118

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL +EE+   N+I+  P +  +P+LNIS A+ ++++        S  + + E    ++
Sbjct: 119 NTGLNSEELFQCNSIVFIPTSQRYPTLNISHALAILLYALTAQKPSSWPQEIGELYADSS 178

Query: 189 KGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
              ++  L     S++   Y R   KK+ +     ++ +R    ++E+  L
Sbjct: 179 DLRMIKSL--FGASVDSNPYIR---KKETVKKAFENMLVRANPTKKEINAL 224


>gi|146302851|ref|YP_001190167.1| tRNA/rRNA methyltransferase SpoU [Metallosphaera sedula DSM 5348]
 gi|145701101|gb|ABP94243.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera sedula DSM 5348]
          Length = 231

 Score =  172 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 34/236 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +ILV+P+   N+G VAR   NF + QL +VNPR      KA   SA     ++ V V S
Sbjct: 3   RVILVEPEGEYNVGFVARLCKNFEVDQLYIVNPRCDLN--KALEFSAKGRDFMEKVVVTS 60

Query: 76  NLKEAIADLHFIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            L+EA+ DL    +T++      +  +  + P E       ++   +  G++FGRE  GL
Sbjct: 61  TLEEALRDLDLKISTSSIADSKGDMLRKSMPPWEIV-----KLMENRKTGLVFGRESVGL 115

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           T EEI +++ ++  P N  +P LN+S AV ++++E  +++ +        +  PA   E 
Sbjct: 116 TREEILMTDIMVHIPANRSYPVLNLSHAVGIVLYEIWKSTHLRGG-----ETGPAPSQET 170

Query: 193 LSFLDYLEISL---------EERGY----------FRPVEKKKKMLDDLYSIFIRP 229
           LS +D    +L         +E  Y           R  E+ + ++  L  +++R 
Sbjct: 171 LSLVDKYVKTLYDAIKRSNGDEAMYIATKRSLLRGIRDEEEGRAVVRFLRKVYMRM 226


>gi|70606436|ref|YP_255306.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68567084|gb|AAY80013.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 235

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 22/247 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RV 73
             +++V+P+   N+G +AR + NF + +  +VNP+      +A   SA    VI+ + ++
Sbjct: 3   IRLVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKCDIN--EAIKFSAKGSEVIEKMMKI 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +N  +AI D+    AT++    + K  L  K    +  ER+   + V  IFGRE  GLT
Sbjct: 61  TNNFDDAIRDVDLKIATSSIA--DIKGDLLRKSIRPIDLERLIKDKKVAFIFGRESVGLT 118

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            EEIA S+ ++  P NP +P LN+S AV ++++E   N         ++   P    E +
Sbjct: 119 REEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRN---------RDNKVPTVSSEPI 169

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE-----VFLLRGIVSTLDK 248
             +D     + +       E  K M   L  + I+  +   E     V +LR I   L K
Sbjct: 170 KLIDDYSKKITDI--LVNKEATKSMYLVLKRVLIK-GIEDNEEAMTIVRILRKIYVRLAK 226

Query: 249 FSRQSSR 255
              +S +
Sbjct: 227 KENESDK 233


>gi|153004019|ref|YP_001378344.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152027592|gb|ABS25360.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 19/234 (8%)

Query: 35  MWNFNLTQLRLVNPR--DGWPSEKARSSS------------ANADCVIDSVRVFSNLKEA 80
           M NF L++L +V P    G P      ++              A  V++   + ++L+ A
Sbjct: 1   MKNFGLSRLAIVAPPSWAGPPRSGGPGTAQEDVLARARRLARRASDVLEGAEIHADLRGA 60

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +    ++  TT+R     +  L P E A  +  R   G+ V ++FG+ER GL++ E+ L 
Sbjct: 61  LGPAVWVCGTTSREVEG-RPRLDPGELAEEVLRRSAHGE-VAVVFGQERRGLSDAELELC 118

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200
            A+ S P  P + S+N++Q+V ++ +E      V +      +        L +  + L+
Sbjct: 119 QAVCSIPTAPAYDSMNLAQSVAVLAYEIGRPRQVRAPAPAAAEPAR--HATLEALWERLQ 176

Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
             L E GY  P +  + +L DL  +  R E  + EV L+   V  L++  R+ +
Sbjct: 177 ALLGEAGYLNP-QNPEHILADLRRLLARAEPTQREVELVLAAVRALERKLRERA 229


>gi|299136114|ref|ZP_07029298.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
 gi|298602238|gb|EFI58392.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
          Length = 270

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 23/257 (8%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-------PSEKARSSSANA 64
                ++LV  +   NIG  ARAM +F    LR+VN             S++   S+  A
Sbjct: 10  RAHLTVVLVGARNPSNIGAAARAMQDFGFRDLRIVNDYAAPFEAAQLEDSQQNVKSAVGA 69

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFS------ 117
             V+   R +S+L EAIAD   I  TTA   R+  + V+A ++AA  +  ++ +      
Sbjct: 70  ASVMAEARRYSSLAEAIADCTLIVGTTAIGERDVRREVVALQQAAPTMLGQLRTLTAADH 129

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFP---SLNISQAVLLMVWECMENSI 173
            Q V ++FG E+ GLTNE+++  + + + P+  P      S+N+ Q+V + ++E      
Sbjct: 130 PQQVALLFGSEKTGLTNEQLSHCSLLTTIPMFAPEAARHLSMNLGQSVAVCLYELTREGF 189

Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFR--PVEKKKKMLDDLYSIFIRPEL 231
             S++        AT  +       L   L   GY R  P    + ++     +  +   
Sbjct: 190 EGSKELPVLHEATATAEDRERLTQLLLDVLHATGYSRRFPANASEPIV---RQLVQQLGE 246

Query: 232 MREEVFLLRGIVSTLDK 248
              E     GI+  +  
Sbjct: 247 SHREAMTWMGILRQILW 263


>gi|167720292|ref|ZP_02403528.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei DM98]
          Length = 192

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R      LAP+ A     +++ +G ++ ++FG ER GL+NE +   +AI   P NP + S
Sbjct: 1   REYGPPRLAPRAAVASALQQVRTG-DIALVFGNERTGLSNEHVERCSAIAHIPANPAYSS 59

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQ---NTPATKGELLSFLDYLEISLEERGYFRP 211
           LN++QAV ++ +E     +   E  V       T A   E+     +LE +L    +  P
Sbjct: 60  LNLAQAVQVLAYELRVALLEDDEAAVPPDAALGTLAQSDEIERMFVHLENALIALDFLDP 119

Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
               KK++  L  +F R  L REEV ++RGI   +
Sbjct: 120 -RNPKKLMPRLRRLFARTGLEREEVNIVRGIAKHI 153


>gi|320537986|ref|ZP_08037891.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
           F0421]
 gi|320145143|gb|EFW36854.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
           F0421]
          Length = 240

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 17/231 (7%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             +I+L  P+  +NIG V RAM N +  +LR+      +  E+    + +AD +  + R 
Sbjct: 3   PIIIVLARPEKSKNIGSVCRAMANSDCAELRITGNASDYDQEEICRLAIHADNIWKTARF 62

Query: 74  FS----NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRE 128
           F      L++A+ D   +  TT R     KS  +AP++ A    E+        I+FG E
Sbjct: 63  FEPSVEGLRQAVYDCAIVAGTTRRMGEKRKSWGMAPEQFASFAFEQGA--GKAAIVFGNE 120

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           R GLT++E+ + +  I+ P    FPSLN+S AV ++ +E             K      +
Sbjct: 121 RTGLTDKELDICSLAINIPSAQNFPSLNLSHAVQIICYELFR-----KFSPRKYGYEKIS 175

Query: 189 KGELLSFLDYLEISLEERGYFRPVEK--KKKMLDDLYSIFIRPELMREEVF 237
             E+    + +   L   G FR   K   ++ +++   I  R  + ++E  
Sbjct: 176 MQEVTLLSEKINEYLCLAGLFRHAGKEDNQRFMEE---IIGRAGMSKKEAA 223


>gi|51892745|ref|YP_075436.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
           14863]
 gi|51856434|dbj|BAD40592.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
           14863]
          Length = 257

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 111/261 (42%), Gaps = 18/261 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P   +      ++L  PQ   N+  + R M NF L+ LRLV P    P   A   + + +
Sbjct: 2   PMQPSPLDRVALVLYQPQDVVNVAAIIRVMSNFGLSDLRLVEPAAFDPHRIA-GIAHHTE 60

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            +I   R F  L+ A+AD      TT R R   + VL P+ AA ++ ++  + Q V I+F
Sbjct: 61  PLIARTRRFPTLEAALADCGLTLGTTGRPRETERQVLPPRAAAPMILDQART-QRVAILF 119

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-------- 177
           G ER GL N  + L + +I+ P +P   SLN++QA L++ +E        ++        
Sbjct: 120 GPERDGLPNAALDLCHGVITIPTHPFNRSLNLAQAALVIAYELWMAWTQPNDGPAHRPPA 179

Query: 178 --KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKK---KMLDDLYSIFIRPELM 232
                    + AT  E  +    ++  L       P             L ++ +R +  
Sbjct: 180 AAAPPDATESLATGAEREALFAAVDELLSA---LYPGGSPGRRSSAAARLRALLLRAQPR 236

Query: 233 REEVFLLRGIVSTLDKFSRQS 253
           REE   L  ++    +  R+S
Sbjct: 237 REEARALTNLLRHAARTGRRS 257


>gi|156936922|ref|YP_001434718.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
 gi|156565906|gb|ABU81311.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
          Length = 228

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 107/227 (47%), Gaps = 16/227 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+P+   N G + R   NF + ++  V P+     E+  + +AN    +D V+V 
Sbjct: 3   VRLVLVEPEGKINFGFILRLCKNFEVDEIVAVRPKFDVRDEEVLTFAANGRDYVDKVKVV 62

Query: 75  SNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + KEA+     +  T+A+  + +  +  + P E    L E+    + + ++FGRE  GL
Sbjct: 63  DDYKEALEG--LVVCTSAKVSSADPLRDFVLPWE----LKEKFGEPERLTLVFGRESVGL 116

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           T EE+   +A++  P +P +P +N+S AV +++WE  +   +      +  +    +  L
Sbjct: 117 TREELKECDALLHVPASPQYPVMNLSHAVAVVLWEVWKQYRIEKGAQPERPDERDLRLAL 176

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL 239
               + L  +L      +   K++++   +  +  +    R+E+  L
Sbjct: 177 -GVAERLARAL-----IKDEAKRERVTVAIKRLLAKA--TRQELRNL 215


>gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 244

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 110/242 (45%), Gaps = 5/242 (2%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   ++L   +  +N+G VAR M NF   +L L +P   +    A   +   + V++ + 
Sbjct: 5   EQLTVVLHQTRSPDNLGAVARVMANFGFFRLILSDP-ATYAFRGAERLAVKGERVLERMA 63

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V   L EA+++  +   TT+R +   +  L P++A   L E    G  V ++ G E+ GL
Sbjct: 64  VARELPEALSECVYAVGTTSRTQLKGRIPLTPEQAVRRLAEESARG-RVALVLGGEQRGL 122

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           ++ E+A+   ++  P + + PS+N++QA  ++++ C       +     E    A  G L
Sbjct: 123 SDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLCGREDAQPAPPPEPEPG--ARMGTL 180

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
            +    +   L    +  P +  + +L ++    +R +L + E  L       L +  ++
Sbjct: 181 SALGARMNEVLLASEFLNP-QAPEHVLREMERTLLRAKLSQREAELWLSAFKHLGRGVKR 239

Query: 253 SS 254
            +
Sbjct: 240 GA 241


>gi|320100237|ref|YP_004175829.1| tRNA/rRNA methyltransferase SpoU [Desulfurococcus mucosus DSM 2162]
 gi|319752589|gb|ADV64347.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurococcus mucosus DSM
           2162]
          Length = 236

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 8/238 (3%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV  +   N+G++AR   NF + +L +V P      ++A + +A     +++  V 
Sbjct: 2   IRVVLVGIEGAVNLGVIARTCVNFGVDELYIVKPVASL--DEALNYAAKGRGFLENAVVT 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L EAI  +  I AT+    +    +    + +          ++V I+FGRE  GLT 
Sbjct: 60  DSLDEAIKGVDMIVATSDEGYSESDMLRQAVDLSDFAERIFPRTRSVAILFGRESTGLTR 119

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EEI  ++ +++ P NP +P LN+SQAV +++WE  ++  + +  NV  + +    GELLS
Sbjct: 120 EEIGRADILVTIPANPAYPVLNVSQAVAVVLWELWKHRGMEAV-NVPRKASRDLLGELLS 178

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQ 252
               +  S+         EK  +       +  +  L  +E  +L+  +  + +  RQ
Sbjct: 179 LAVDVSRSVMST-----EEKVARSRILWKRMLSKAMLTEKEARVLKYWLQRVRRQLRQ 231


>gi|328946998|ref|YP_004364335.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328447322|gb|AEB13038.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 242

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 10/231 (4%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +    VI+L  P+   NIG   RAM N  + +LR+V  ++    +K    + +A  + D+
Sbjct: 2   NLDNIVIVLSRPEEPRNIGAACRAMANNGIHKLRIVGKKEEIDLDKVHVLAIHASYIFDN 61

Query: 71  VRVFSNLKEAIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFG 126
              FS++ EA +D       T  R +     +L P+E A   N    +   G  V ++FG
Sbjct: 62  AEYFSSITEACSDCVCSCGTTRRRGKKRKGKLLLPEEFAKTANRISGTEKKGGKVAVVFG 121

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            ER GL + EI      ++ P +  F SLN+S AV +M +     +  +     K   TP
Sbjct: 122 NERTGLDDNEILECEMGVTIPSSEEFGSLNLSHAVQIMCYTLFRYNEKN-----KIGYTP 176

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVF 237
                L   +  +  +L++ G+F  V  +K M      I  R  L   E  
Sbjct: 177 IDSKRLKKTVTTIADNLQKIGFF-SVTGRKDMEIFWRDILSRSALSEGEAQ 226


>gi|283788579|ref|YP_003368444.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282952033|emb|CBG91762.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 206

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 16/216 (7%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M      +LR+V+  +       R  +  +  +ID++ VF  L +A+ D+ F  ATTAR+
Sbjct: 1   MKTMGFARLRIVDS-EAHREPATRWVAHGSGDIIDNIEVFPTLFDALQDVDFTIATTARS 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R  F     P E   +L E+     +  ++FGRE  GLTNEE+AL++ +   P+   +PS
Sbjct: 60  RAKFHYYATPAELVPLLEEKAGWMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPS 119

Query: 155 LNISQAVLLMVWEC--MENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPV 212
           LN+ QAV++  ++   +      +     E    A +  ++  L     +L+  G     
Sbjct: 120 LNLGQAVMVYCYQLASLMQQPDKNIDISDEFQLRALRSRVMRLL----STLDVAG----- 170

Query: 213 EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
               K++D L        L + +  +L  +V  ++K
Sbjct: 171 --DVKLVDWLQQRLG--LLGQRDTAMLHRLVHDIEK 202


>gi|159899747|ref|YP_001545994.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892786|gb|ABX05866.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 241

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 6/233 (2%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             + +L +PQ   NIG   RA+ N    +LRLV P   +  E+    +  +  +++ +  
Sbjct: 8   NIITVLHEPQREVNIGSTVRALLNTGFQRLRLVQP-VAYSIERLDDMAHRSGPLVEQIET 66

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F++L EA+A++ ++   + R+R   ++V  P E A  L     +   V  +FGRE  GL 
Sbjct: 67  FASLGEALANVSYVVGFSGRSRGERQAVSLP-EFAPTLTALAAT-APVAFVFGREDRGLD 124

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N  I   + +IS PV+P +PSLN++ AVLL ++     +  +      +    A+   LL
Sbjct: 125 NAAIEQCSQLISIPVDPSYPSLNLADAVLLALYTIRGLATSAEPLPSPDLADQASHELLL 184

Query: 194 SFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           + LD     L +  + R   ++   +  +  +  R      E+ L+  I   +
Sbjct: 185 NLLD---QLLTKLNFSRTAGQQASAVRVMRDLLARSRPSPSEIALVTAICRKM 234


>gi|167380896|ref|XP_001735498.1| nucleolar phosphoprotein [Entamoeba dispar SAW760]
 gi|165902498|gb|EDR28302.1| nucleolar phosphoprotein, putative [Entamoeba dispar SAW760]
          Length = 350

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 23/277 (8%)

Query: 1   MTPYAPQLQNSAK----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
           +TP   ++Q+          ++LV P   +NIG V R   N+ + +L +VNP      E+
Sbjct: 79  ITPEKEKVQDERTFGDIKISVVLVRPMHEDNIGAVGRLCANYGINKLYIVNPLCKI-GEE 137

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNE 113
           +   S + +  I+   + ++L+E   D   +   TAR    + N + ++  +EA  +L+ 
Sbjct: 138 SIKVSRHGNGYIEGAVICNSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLST 197

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                  +G++FG E  GL  EE    + +    +   +P LN+S AV + +   M   +
Sbjct: 198 M---KGCLGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIAL-NYMHMRL 253

Query: 174 VSSEKNVKE---QNTPATKGE-LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
                 V E   +N    KGE L  + + L   + E+     VE  KK       +  R 
Sbjct: 254 RDGGDLVPEGCKENIAKEKGELLEQWKEILHSVMNEQREIGAVESMKK-------LLGRV 306

Query: 230 ELMREEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266
            L   E   L G    L     +    +  +  K E 
Sbjct: 307 MLTEREAAALDGAFKALLHHFHEKEVHSQEINNKKED 343


>gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
 gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
          Length = 237

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 111/240 (46%), Gaps = 19/240 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
             +ILV  +   N+G + R   NF++ +L LV P+    S++ R  +AN    ID   V+
Sbjct: 2   IRVILVGTEGEINLGFIVRLCRNFDVDELILVKPQIDPFSDEVRRFAANGAIYIDSGKVK 61

Query: 73  VFSNLKEAIADLHFIYATTAR----NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++ NL +A+  +     T++       +  +  +  +E A + ++       + ++FGRE
Sbjct: 62  IYENLDDALRGIGISGCTSSVIDVDGGDIVRKAIELEEFANIASKYSS----IAVVFGRE 117

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GLT EEI+  + ++    NP +P LN+S AV + ++   +   V  + ++ ++  PA 
Sbjct: 118 SVGLTREEISKCDFLVHIASNPEYPVLNLSHAVAITLYMLYK---VLRKHSLFDRIEPAQ 174

Query: 189 KGELLSFLDYLEISLEERGYF--RPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
           + EL      LE  ++E         ++++           R  L R EV LL   +  +
Sbjct: 175 ENEL----RILEKYIDEIVNIVASDEKQRESFSLVFKRFIRRTTLSRAEVGLLTTFIRRI 230


>gi|258619944|ref|ZP_05714984.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
 gi|258587677|gb|EEW12386.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
          Length = 135

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV      NIG  ARAM    L+Q+ LV+P+    ++    ++  ++  + + ++F  
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQIDAQAIALAAGASEIAL-NAQIFPT 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ A+AD   +  T+AR+R     +L P++    L         V ++FGRER GLTN+E
Sbjct: 66  LEAAVADCGLVVGTSARSRTLDWPMLEPRQCGEKLIAEASQ-HTVAMVFGRERTGLTNDE 124

Query: 137 IALSNAIIS 145
           + L +  + 
Sbjct: 125 LQLCHYHVC 133


>gi|322433937|ref|YP_004216149.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
 gi|321161664|gb|ADW67369.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
          Length = 262

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 15/241 (6%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NIG VARAM +     LR+VN  D      A  S+ +A  V+ +    +++ EA+AD 
Sbjct: 27  PSNIGAVARAMHDLGFAHLRIVN--DFPVPFAAAKSAVDASSVLAAATEPASVAEAVADC 84

Query: 85  HFIYATTA-RNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  TTA   R     +    +AA  + +  R      + ++FG E+ GL+NEE++  +
Sbjct: 85  TLVLGTTAVGERALQHPLQTLNQAAATVRQTLRTDPAAKIALLFGSEKTGLSNEELSHCH 144

Query: 142 AIISFPVN----PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           A+++ P+N        S+N+ QA  + +++       +         TPA   +L     
Sbjct: 145 ALLTIPMNTLTADHHLSMNLGQAAAVCLYQL-ALGDETLTPPAPPTETPAAAADLERLTS 203

Query: 198 YLEISLEERGYFR--PVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
            L+  L++ GY R  P   ++    ++  +  R  L  ++  +  GI+  L    +  S 
Sbjct: 204 LLQQVLDDSGYTRRHPANSRE---PNVRRLVRRMALSADDAPVWTGILRQLLHALKPGSE 260

Query: 256 R 256
           +
Sbjct: 261 K 261


>gi|291287143|ref|YP_003503959.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884303|gb|ADD68003.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 240

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 109/240 (45%), Gaps = 9/240 (3%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            KG  ++L   +   N+G +ARAM N   + L        +  E A   + +A  ++++ 
Sbjct: 1   MKGVNVLLSRLEGPVNLGFIARAMANTGFSSLSYTG-TVPYNHEDALKFAVHASDILENA 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                 +E I+    +   T R+  +  ++   +E    ++E + +G  VG++FG E  G
Sbjct: 60  YHPETFEELISTSDVVIGFTPRSPFSTNNLPY-EELKDFVSETVSTGLKVGLLFGNEASG 118

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L N+E++     +S P +  + S+N++QAVL+ +W+         E + + +   A +  
Sbjct: 119 LNNKELSACAHRVSLPTSADYISMNLAQAVLVSLWQI-----KDIEPDKEAEAEYADRNT 173

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV-STLDKFS 250
           + + L  ++  LE   YF   +    +  ++  +     L + E  L+  +   ++ ++S
Sbjct: 174 IGTLLQRIKDHLELIEYFN-DQNPDHIWKEIRQMIESKRLTKREAELMLSVFGKSISRYS 232


>gi|325474454|gb|EGC77641.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 251

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 10/176 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IIL  P+   NIG V R M N   + LR+   ++ +   +    + +A  V  + R + 
Sbjct: 6   TIILCRPETSANIGAVCRVMANTGFSDLRITGNKEDYDETEVLKLALHASHVWKNARFYP 65

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                LKEA +D   +  T+ R  +  K + ++P++  + L +  F G  +G++FG ER 
Sbjct: 66  PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPEDLCLDLKK--FYGGRLGLVFGNERT 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           GL +EE+ + +  ++ P    F S N+S AVL++ +      I      + E + P
Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCYSLY---IAEKNNPLSENDNP 176


>gi|67478105|ref|XP_654474.1| RNA methyltransferase, TrmH family [Entamoeba histolytica
           HM-1:IMSS]
 gi|56471520|gb|EAL49084.1| RNA methyltransferase, TrmH family, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 350

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 108/273 (39%), Gaps = 15/273 (5%)

Query: 1   MTPYAPQLQNSAK----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
           +TP   ++Q+          +ILV P   +NIG V R   N+ + +L +VNP      E+
Sbjct: 79  ITPEKEKVQDERTFGDIKMSVILVRPMHEDNIGAVGRLCANYGINKLYIVNPLCEI-GEE 137

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNE 113
           +   S + +  I++  +  +L+E   D   +   TAR    + N + ++  +EA  +L+ 
Sbjct: 138 SIKVSRHGNGYIENAVICKSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLST 197

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                  VG++FG E  GL  EE    + +    +   +P LN+S AV + +   M   +
Sbjct: 198 M---KGCVGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIAL-NYMHMRL 253

Query: 174 VSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
                 V E        E    L+  +  L         +++   ++ +  +  R  L  
Sbjct: 254 RDGGDLVPEGCKEIIAKEKGELLEEWKEILHSV---MNEQREVGAVESMKKLLGRVMLTE 310

Query: 234 EEVFLLRGIVSTLDKFSRQSSRRNNVLLQKTEK 266
            E   L G    L     +    +  +  K E 
Sbjct: 311 REAAALDGAFKALLHHFHEKEIHSQEINNKKED 343


>gi|42527587|ref|NP_972685.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41818415|gb|AAS12604.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 251

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IIL  P+   NIG V R M N   + LR+   ++ +   +    + +A  V    R + 
Sbjct: 6   TIILCRPETSANIGAVCRVMANTGFSDLRITGTKEDYDETEVLKLALHASHVWKKARFYP 65

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                LKEA +D   +  T+ R  +  K + ++P++  + L +  F G  +G++FG ER 
Sbjct: 66  PTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPEDLCLDLKK--FYGGRLGLVFGNERT 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           GL +EE+ + +  ++ P    F S N+S AVL++ +      I      + E++ P+
Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCYSLY---IAEKNNPLTEKDNPS 177


>gi|197123484|ref|YP_002135435.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196173333|gb|ACG74306.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 237

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 3/201 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L+ P+  EN+G VARAM NF      +            R  + +A+ ++D  R+
Sbjct: 4   PIRLVLLRPRNPENLGAVARAMKNFGADDWAI-AELGTHDFAAMRRVAVHAEELLDRPRL 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+AD  ++  T++R     + +  P            +     I+FG ER GLT
Sbjct: 63  VRTLDEAVADCAWVVGTSSRTVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLT 120

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N+E+   + + + P     PSLN++QA L+ ++E  + ++ ++    +     AT  EL 
Sbjct: 121 NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPPRAAEAGATDAELT 180

Query: 194 SFLDYLEISLEERGYFRPVEK 214
           +  D L  +L   G+    E+
Sbjct: 181 AVEDALRAALRGGGFLAGPER 201


>gi|317050583|ref|YP_004111699.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316945667|gb|ADU65143.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 267

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 105/263 (39%), Gaps = 5/263 (1%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P A +      G  ++L + +   N+G ++RAM N    QLR   P            +
Sbjct: 5   APAAEESTGWKNGVWVLLNNIEGPVNLGFISRAMANTGFAQLRFCGPVSA-DDPDVLRYA 63

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            ++  + ++     ++      +  +   + R   +    +   +   ++ +   + + V
Sbjct: 64  VHSGHLRENFTRVEDIGGLCRAMDVVIGMSPRQPWSDGCDITLDQLPALVGQHTAAHKRV 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNV 180
           G++FG E  GL N  ++     ++ P +  + S+N++QAVL+++WE   +          
Sbjct: 124 GLLFGNEAHGLDNAALSHCRYRLALPTDSGYTSMNLAQAVLIVLWELHRHGASGVGIDPS 183

Query: 181 KEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLR 240
                PA+      FL+ L   LE   Y  P +    +  +L  +  + +    E+ LL 
Sbjct: 184 MPAAAPASMR--EQFLEKLRQYLELIDYLDP-QNPDHLWQELAIMIRKRDWSERELTLLM 240

Query: 241 GIVSTLDKFSRQSSRRNNVLLQK 263
           G++ T  K    +  + N    +
Sbjct: 241 GLIHTSRKRLLSAGHKINTENSR 263


>gi|170289746|ref|YP_001736562.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173826|gb|ACB06879.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 246

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 15/236 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++ILV+P+  +N+GM+ARAM NF   +LR+V P          ++   A  VI+ + + +
Sbjct: 5   IVILVEPEKADNVGMIARAMKNFGFYELRVVRPMFESFDRAIAAAMR-ARDVIERMEILT 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIFGRERWGLTN 134
            L+EA   +  +  TTAR     +  +  +   I  L   I      G++ GRE  GLT 
Sbjct: 64  TLEEARRGVDLMIGTTAR---VSRYSVERRAIPIRDLLSSISWDAVYGLVLGRESIGLTT 120

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           EE++  + + + P +  +P+LN++ A  ++++E       SS   VK    P  +     
Sbjct: 121 EELSYCDIVATIPSSEDYPALNVANAAAIILYEFFLAFKDSSRFEVK----PVPREAREV 176

Query: 195 FLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP---ELMREEVFLLRGIVSTLD 247
            + Y+   ++  G  R    +++ L  +  +  R     +  EE     GI+  + 
Sbjct: 177 MIRYIGEVIDLLGGMRD---RERFLFTMRRMIERTFPCGISEEEASQALGIIKAVR 229


>gi|161617913|ref|YP_001586278.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161367277|gb|ABX71045.1| hypothetical protein SPAB_05780 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 203

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 1/131 (0%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
              T LR+V+ +        R  +  +  +ID++ VF  L +A+ D+ F  ATTAR+R  
Sbjct: 1   MGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVFQTLADALHDVDFTVATTARSRAK 59

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           F    +P E   +L E+    ++  ++FGRE  GLTN+E+AL++ +   P+   +PSLN+
Sbjct: 60  FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119

Query: 158 SQAVLLMVWEC 168
            QAV++  ++ 
Sbjct: 120 GQAVMVYCYQL 130


>gi|167621090|ref|ZP_02389721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis Bt4]
          Length = 174

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++  +FG ER GL+NE +   +AI   P NP + SLN++QAV ++ +E     +   E 
Sbjct: 6   GDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELRVALLEDGEP 65

Query: 179 NVKEQNTP---ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
                      A   E+     +LE +L    +  P    KK++  L  +F R  L REE
Sbjct: 66  ATPPDAALGARAQSDEIERMFVHLENALIALDFLDP-RNPKKLMPRLRRLFARTGLEREE 124

Query: 236 VFLLRGIVSTL 246
           V ++RGI   +
Sbjct: 125 VNIVRGIAKHI 135


>gi|86159409|ref|YP_466194.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775920|gb|ABC82757.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 236

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 3/201 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L+ P+  EN+G VARAM NF      +            R  + +A  ++D  R+
Sbjct: 4   PVRLVLLRPRNPENLGAVARAMKNFGADDWAI-AELGTHDFAAMRRVAVHAGELLDRPRL 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+AD  ++  T++R     + +  P            +     I+FG ER GLT
Sbjct: 63  VRTLDEAVADCAWVVGTSSRAVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLT 120

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N+E+   + + + P     PSLN++QA L+ ++E  + ++ ++    +     AT  EL 
Sbjct: 121 NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPARAPEAGATDAELS 180

Query: 194 SFLDYLEISLEERGYFRPVEK 214
           +  + L  +L   G+    E+
Sbjct: 181 AVEEALRAALRGGGFLAGPER 201


>gi|194736168|ref|YP_002117509.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194711670|gb|ACF90891.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
          Length = 203

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 1/131 (0%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
              T LR+V+ +        R  +  +  +ID++ VF  L +A+ D+ F  ATTAR+R  
Sbjct: 1   MGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVFHTLADALHDVDFTVATTARSRAK 59

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           F    +P E   +L E+    ++  ++FGRE  GLTN+E+AL++ +   P+   +PSLN+
Sbjct: 60  FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119

Query: 158 SQAVLLMVWEC 168
            QAV++  ++ 
Sbjct: 120 GQAVMVYCYQL 130


>gi|41615173|ref|NP_963671.1| hypothetical protein NEQ384 [Nanoarchaeum equitans Kin4-M]
 gi|40068897|gb|AAR39232.1| NEQ384 [Nanoarchaeum equitans Kin4-M]
          Length = 232

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/234 (23%), Positives = 107/234 (45%), Gaps = 11/234 (4%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
            ++  V+P+  +NIG +AR   NFN   L L+NP+     EKA   + +A  ++      
Sbjct: 3   VIVFFVEPEKVDNIGAMARVCKNFN-ADLYLINPKVD-NYEKAFVVAKHAQDLLQKAIEN 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +++ EA   +     TT +  N +  + +P +   +      S   +GI  GRE  GL
Sbjct: 61  KLNSIDEAKELVDISVGTTGKIANEYNVLRSPLKPWELAERFANSDIKLGIFIGRESIGL 120

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           TNEE++  + I++ P N  +P LN + A  ++++E  ++S     K          K ++
Sbjct: 121 TNEELSKMDFIVTIPANKEYPILNATHATAIILYELFKHS-----KEGHVNLALPKKEQI 175

Query: 193 LSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTL 246
              LDY++  +++    +P  +K+     +  +  +  +   E   L G   ++
Sbjct: 176 DVLLDYVKKIIDKLP--QPDYRKEYYFIIMRKLITQGIINSREANTLIGFFRSI 227


>gi|119774888|ref|YP_927628.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
 gi|119767388|gb|ABL99958.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 225

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/179 (29%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G  ARAM     TQL L+  +     ++AR  +  A  ++D+ RV  +
Sbjct: 4   VVLVEPARAANVGAAARAMKTMGFTQLILIGSQP-HLEDEARWVAHGATDILDNARVLDS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +  A+   + ATTAR R + ++ L P+E AI L +     Q++ ++FGRE  GL+N+E
Sbjct: 63  FDDLRAEFDLLIATTARERGSPRTFLNPEELAITLGQSGA--QSMALVFGRESSGLSNQE 120

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           ++  +     P+   +PSLN+ QAV++  +     ++   E+ +  Q   A + ++ S 
Sbjct: 121 LSQCDLFSYVPLAGDYPSLNLGQAVMVYTY-----ALSGVERTIGLQTRDADERQIQSL 174


>gi|159468668|ref|XP_001692496.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278209|gb|EDP03974.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 154

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 13/156 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVIDSVRVF 74
           V+ILV+P+ GENIG  AR M NF L +LRLV P  G WP+EKAR+ +A A  +ID+ +V+
Sbjct: 1   VVILVEPKRGENIGAAARGMKNFGLRELRLVRPAGGEWPNEKARAVAARAVDLIDAAKVY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+ADL ++YA + R R            A V +    +G  +G++FGRE  GL N
Sbjct: 61  DDLDAALADLQYVYAASGRPR------------AQVCDALPPAGTRIGVMFGREDNGLYN 108

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +E+  +NAI++   +P F SLN+ QAVL+  +E   
Sbjct: 109 DELVRANAILTIDTDPNFYSLNLGQAVLITCYELFR 144


>gi|294140922|ref|YP_003556900.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293327391|dbj|BAJ02122.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
           DSS12]
          Length = 230

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 24/201 (11%)

Query: 16  VIILVDPQLGENIGMVARA---------MWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           V +LV+P          RA         +      QL LVN       ++A   +  A  
Sbjct: 4   VFVLVEPT---------RAANVGAAARAIKTMGFEQLILVNS-SLHLEKEAHWVAHGATD 53

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +++   V  ++ +  A    + ATTAR R   +  L P E    L E+  S + + ++FG
Sbjct: 54  ILERTLVVDSVADIRAQYDQLIATTARERGTPRQYLTPDELKGTLIEQSDSVKKIALLFG 113

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           RE  GL+N E+ L +     P+   +PSLN++QAV++  +   E +    +K ++ Q   
Sbjct: 114 RESSGLSNSELELCDVFSYVPLINDYPSLNLAQAVMVYSYALSEVNNRLKQKQIQPQE-- 171

Query: 187 ATKGELLSFLDYLEISLEERG 207
              G+L +  +  ++ L+E G
Sbjct: 172 ---GQLQALKNRTQLLLQELG 189


>gi|218663166|ref|ZP_03519096.1| glutamate racemase [Rhizobium etli IE4771]
          Length = 450

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 2/136 (1%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           A  L  +  +G+  GI+FGRERWGLTNEE+AL++ I++FPVNP F SLNI+QAVLLM +E
Sbjct: 21  AETLRTKFRAGEATGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYE 80

Query: 168 CMENSIVSSEKNVKE--QNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSI 225
            M++ +   E    +  +  P+TK +L    D LE +L+ R YF P  KK KM+D+L ++
Sbjct: 81  WMKSGMEDLEAVPFQALEQRPSTKEQLFGLFDQLEEALDSRNYFHPPSKKPKMVDNLRAV 140

Query: 226 FIRPELMREEVFLLRG 241
             R     +E+ +LRG
Sbjct: 141 LSRRAFTEQEISVLRG 156


>gi|220918283|ref|YP_002493587.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956137|gb|ACL66521.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 237

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 3/201 (1%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L+ P+  EN+G VARAM NF      +            R  + +A+ ++D  R+
Sbjct: 4   PVRLVLLRPRNPENLGAVARAMKNFGADDWAI-AELGTHDFAAMRRVAVHAEELLDRPRL 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L EA+AD  ++  T++R     + +  P            +     I+FG ER GLT
Sbjct: 63  VRTLDEAVADCAWVVGTSSRTVKGKRRL--PPAEVAREALERAAAGRTAIVFGDERSGLT 120

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           N+E+   + + + P     PSLN++QA L+ ++E  + ++ ++    +     AT  EL 
Sbjct: 121 NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPSRAAEAGATDAELT 180

Query: 194 SFLDYLEISLEERGYFRPVEK 214
           +  D L  +L   G+    E+
Sbjct: 181 AVEDALRAALRGGGFLAGPER 201


>gi|168035469|ref|XP_001770232.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678449|gb|EDQ64907.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 287

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 38/256 (14%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVI 68
           + +   ++LV PQ   N+G                VNP+  +   +A++ +AN  +   +
Sbjct: 23  ALERVRVVLVSPQHAGNVGS---------------VNPQCDFRGVEAQTMAANVTSRSKL 67

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           + +RV   L EA+ D       T R+      +  P      L        N+ I+FGRE
Sbjct: 68  EHIRVTDTLPEALKDCSMAVGFTRRSG----ILRIPDTRLANLCIPPLDSLNLAIVFGRE 123

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM---VWECMENSIVSSEKN------ 179
             GLTNEE+     + S P      SLN+S AV ++   ++E + +       N      
Sbjct: 124 DRGLTNEELMYCTHVCSIPSIQSAGSLNLSHAVAVVLSRLYEQIPHEQAHDPSNYVPIHS 183

Query: 180 --VKEQNTPATKGELLSFLDYLEISLEERGY------FRPVEKKKKMLDDLYSIFIRPEL 231
              K     A+   + + +   E+ L+                +++ML  +  + +R   
Sbjct: 184 TSFKNLPGTASIEAVENLMRRWELVLQACNQATVALGIPNYRMQERMLVHVRRMLLRTGP 243

Query: 232 MREEVFLLRGIVSTLD 247
             +E+  L G ++ ++
Sbjct: 244 SLKELGFLHGFLTMVE 259


>gi|326626277|gb|EGE32622.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 203

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 1/131 (0%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNN 97
              T LR+V+ +        R  +  +  +ID++ VF  L +A+ D+ F  ATTA +R  
Sbjct: 1   MGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEVFRTLADALHDVDFTVATTACSRAK 59

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           F    +P E   +L E+    ++  ++FGRE  GLTN+E+AL++ +   P+   +PSLN+
Sbjct: 60  FHYYASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNL 119

Query: 158 SQAVLLMVWEC 168
            QAV++  ++ 
Sbjct: 120 GQAVMVYCYQL 130


>gi|547828|sp|P37006|LAST_SERMA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
          Length = 196

 Score =  155 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 10/199 (5%)

Query: 50  DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
           +      AR  +  A  ++D V+ F+ L++A+AD+ F  ATTAR+R  F     P E   
Sbjct: 4   EAHLQPAARWVAHGAGEILDGVQTFATLEQALADVDFTVATTARSRARFHYYCTPPELLE 63

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            L+ER        ++FGRE  GLTNEE+AL++ +   P+   +PSLN+ QAV++  ++  
Sbjct: 64  QLSERKQWVGQAALVFGREDSGLTNEELALADLLTGVPMQADYPSLNLGQAVMVYCYQLA 123

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRP 229
               V++             G+L +     +  L+        + +  +   L       
Sbjct: 124 SLMGVNAAPQEAAAPE----GQLRALRHRADALLDALEVGDDQKLRDWLHQRL------G 173

Query: 230 ELMREEVFLLRGIVSTLDK 248
            L + +  +L  ++  ++K
Sbjct: 174 ALPQRDTAMLHTLLHDIEK 192


>gi|213580756|ref|ZP_03362582.1| tRNA/rRNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 115

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 3/112 (2%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2   LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           ++   L EA+A    +  T+AR+R     +L P+E    L +R  SG+  G 
Sbjct: 61  QIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECG--LKKRSGSGKYAGC 110


>gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1]
 gi|116062431|dbj|BAA79523.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 243

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 7/163 (4%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   I+LV+ +   N+G VAR   NF   ++ LV+PR     E+A+  +A A   +D+ 
Sbjct: 1   MEKLRIVLVETEGAVNLGFVARLAENFEADEIYLVSPRASL--EEAKRYAARAAWRLDAA 58

Query: 72  RVFSNLKEAIADLHFIYATTA--RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           RV SNL+EA+  +     T++   +R+  ++ LAP EAA VL     +   V I+FGRE 
Sbjct: 59  RVVSNLEEALRGVSASLCTSSHMSDRDALRAPLAPWEAAEVL---AATPGTVAIVFGRES 115

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GLT  EIAL +   S P +P +PSLN+S A  + ++E  +  
Sbjct: 116 VGLTRGEIALCSLYSSIPASPRYPSLNLSNAAAIYLYEVYKAR 158


>gi|119470463|ref|ZP_01613191.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonadales bacterium TW-7]
 gi|119446388|gb|EAW27664.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonadales bacterium TW-7]
          Length = 118

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV+     NIG  ARAM    L++L LV+P     S  A + SA A  V+ +  + 
Sbjct: 6   IRVVLVNTSHSGNIGSAARAMKTMGLSKLYLVDPACEIDS-HASALSAGASDVLGNAVIV 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             L++AIAD      T+AR+R     ++ P+E    L     +G  V ++FGRE 
Sbjct: 65  DKLEDAIADCALTIGTSARSRTLSWPMVEPRECGEKLVAEAENG-PVALVFGREN 118


>gi|218671238|ref|ZP_03520909.1| tRNA/rRNA methyltransferase protein [Rhizobium etli GR56]
          Length = 111

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/111 (58%), Positives = 87/111 (78%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     + Q  A+GP IILV+PQ+GENIGMVARAM NF L +LRLVNPRDGWP+EKA+++
Sbjct: 1   MAGTNSERQLLAEGPAIILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQAT 60

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
           ++ AD VI + +V+  L++AIADL+F+YATTAR+R+N+K V +P  AA  L
Sbjct: 61  ASKADHVIAATKVYDTLEQAIADLNFVYATTARSRDNYKPVRSPVLAAETL 111


>gi|145341114|ref|XP_001415660.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575883|gb|ABO93952.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 445

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 92/240 (38%), Gaps = 60/240 (25%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN---------------------- 47
            +      ++  PQ   N+G  AR M NF +  L LV+                      
Sbjct: 60  PALSNVRFVMCAPQGPANVGAAARVMQNFGIYDLALVDVGPFVLTTTTRSGDATREISDE 119

Query: 48  --------P-----------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
                   P           R     E+A   +  AD ++       + +EA+    F+ 
Sbjct: 120 ASEGEGRAPERASEVLGSEARTTPLCEEAMRYACAADWLLADAERCDDAEEALRGCSFVL 179

Query: 89  ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148
           ATTAR R+    ++  +EAA  + E    G  V ++FG ER GLTN+E++ ++A ++ P 
Sbjct: 180 ATTARPRSGT-PLMTAREAAERVREEAKRG-KVAVLFGNERTGLTNDELSWAHAAVAIPT 237

Query: 149 NPL---------F------PSLNISQAVLLMVWECMEN--SIVSSEKNVKEQNTPATKGE 191
                       +       SLN+S AV ++ +E         ++ + + E+    T  E
Sbjct: 238 AGAGKICRKSLKYTGGTGPTSLNLSHAVGILAYEIFMACGGEATNGEILPEKAKLLTVDE 297


>gi|255075243|ref|XP_002501296.1| predicted protein [Micromonas sp. RCC299]
 gi|226516560|gb|ACO62554.1| predicted protein [Micromonas sp. RCC299]
          Length = 467

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 42/202 (20%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG------------------- 51
                  +L  PQ  +NIG +AR M NF +T LR+V P  G                   
Sbjct: 74  PLDNVCFVLCRPQGPQNIGGIARVMQNFGVTDLRIVAPEPGALAPPFDAADEYDRAIHPP 133

Query: 52  ------WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
                   S++A   + +AD ++   R  +   EA+AD+ F+ ATTAR R N  S+   +
Sbjct: 134 EVRARAPLSDEAHKFAVHADWLLRDARRCATADEALADVAFVAATTARPRENL-SIADVR 192

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL-------------- 151
            A+ VL     +G  V ++FG E  GLTN+E+A +N  +    +                
Sbjct: 193 AASEVLRRHAANGTKVAVVFGNEATGLTNDELARANLGVMIATSAATSSPASSRKRYTGA 252

Query: 152 --FPSLNISQAVLLMVWECMEN 171
               SLN+S AV ++ +E  + 
Sbjct: 253 KGATSLNLSMAVGVVAYELFQA 274


>gi|303286179|ref|XP_003062379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455896|gb|EEH53198.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 464

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 47/208 (22%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD----------------- 50
           +++      ++L  PQ  +NIG +AR + NF +  LR+V P                   
Sbjct: 85  VRSLLSNVCVVLCRPQGPQNIGGIARVLNNFGIADLRIVTPEPSALAPPYDAADATTDKA 144

Query: 51  ---------GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
                       +E+A   + +AD ++   R   +  EA++D  F+ ATTAR R N   +
Sbjct: 145 THPAETRATAPLAEEAHKFAVHADWLLRDARRCVDAAEALSDCVFVAATTARARENL-PI 203

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP----------- 150
           L  + +A+   +   S   V I+FG E  GLTNEE++L+N  +  P              
Sbjct: 204 LDAR-SAVERVKVAASEGKVAIVFGNEATGLTNEELSLANVGVMIPTAGRAGAGAGGRRG 262

Query: 151 --LF------PSLNISQAVLLMVWECME 170
              +       SLN+S AV ++ +E   
Sbjct: 263 EKRYTGGAGPTSLNLSHAVGVVAYELFR 290


>gi|302786858|ref|XP_002975200.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
 gi|300157359|gb|EFJ23985.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
          Length = 338

 Score =  144 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 25/223 (11%)

Query: 44  RLVNPRDGWPSEKARSSSAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF--K 99
            LV+P   + S++AR  + N  A  +++ V V   + EA+ +       T R+  +    
Sbjct: 53  WLVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECLMAIGFTRRDGRDRVVN 112

Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            V  PK            GQ + ++FGRE  GLTNEE+         P      SLN+S 
Sbjct: 113 EVPYPKLCIP------AKGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSH 166

Query: 160 AVLLMV------WECMENSIVSSEKNVKEQNTP---ATKGELLSFLDYLEISLEERG--- 207
           AV L +      +E +            E   P   A   E+   L      ++      
Sbjct: 167 AVALALSKMFSSYERLRRVHKEPGPEYNEFLPPPGTAPLREVDLLLRRWRSVVKNCNVAA 226

Query: 208 --YFRPV-EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
               +P    + ++   L  IF R  L + EV ++ G ++ +D
Sbjct: 227 SLVSKPEFTTRHRLQQHLKRIFHRARLAQREVNIIHGFLTLVD 269


>gi|302791677|ref|XP_002977605.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
 gi|300154975|gb|EFJ21609.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
          Length = 338

 Score =  144 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 87/223 (39%), Gaps = 25/223 (11%)

Query: 44  RLVNPRDGWPSEKARSSSAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF--K 99
            LV+P   + S++AR  + N  A  +++ V V   + EA+ +       T R+  +    
Sbjct: 53  WLVSPECDYFSDEARQMAVNPVAKSLLEDVNVVKTIPEAVGECLMAIGFTRRDGRDRVVN 112

Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            V  PK            GQ + ++FGRE  GLTNEE+         P      SLN+S 
Sbjct: 113 EVPYPKLCIP------AKGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSH 166

Query: 160 AVLLMV------WECMENSIVSSEKNVKEQNTP---ATKGELLSFLDYLEISLEERG--- 207
           AV L +      +E +            E   P   A   E+   L      ++      
Sbjct: 167 AVALALSKMFSSYERLRRVHKEPGPEYNEFLPPPGTAPLREVDLLLRRWRSVVKNCNVAA 226

Query: 208 --YFRPV-EKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLD 247
               +P    + ++   L  IF R  L + EV ++ G ++ +D
Sbjct: 227 SLVSKPEFTTRHRLQQHLKRIFHRARLAQREVNIIHGFLTLVD 269


>gi|115372736|ref|ZP_01460042.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370217|gb|EAU69146.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 218

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 5/220 (2%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARN 94
           M NF   +L L +P   +    A   +   + V++ + V   L EA+++  +   TT+R 
Sbjct: 1   MANFGFFRLILSDP-ATYAFRGAERLAVKGERVLERMAVARELPEALSECVYAVGTTSRT 59

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           +   +  L P++A   L E    G  V ++ G E+ GL++ E+A+   ++  P + + PS
Sbjct: 60  QLKGRIPLTPEQAVRRLAEESARG-RVALVLGGEQRGLSDAELAVCADVLVIPTSEVQPS 118

Query: 155 LNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEK 214
           +N++QA  ++++ C       +     E    A  G L +    +   L    +  P + 
Sbjct: 119 MNLAQAAGVLLYLCGREDAQPAPPPEPEPG--ARMGTLSALGARMNEVLLASEFLNP-QA 175

Query: 215 KKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
            + +L ++    +R +L + E  L       L +  ++ +
Sbjct: 176 PEHVLREMERTLLRAKLSQREAELWLSAFKHLGRGVKRGA 215


>gi|159473264|ref|XP_001694759.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276571|gb|EDP02343.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 324

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/294 (21%), Positives = 105/294 (35%), Gaps = 31/294 (10%)

Query: 2   TPYA--PQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---- 53
           +P A  P L +        ++LV P+   NIG VARA  NF    L +V PR        
Sbjct: 9   SPAASGPALPHDLLLSDVRVVLVAPKHEANIGAVARAAANFECLNLYIVAPRCDGAAAGW 68

Query: 54  SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS------------- 100
           + +AR  +   D V+D   V   L++A+AD       T R     ++             
Sbjct: 69  TGEARKVACG-DSVLDRAVVVDTLEQALADTSSSIGFTRRTGAARRTHASLGHLLAEFPF 127

Query: 101 --VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
              L P   A+  +          ++FGRE  GLT  E+ L +   + P   + PS+N+S
Sbjct: 128 ALPLQPPPVAVPTSAAAAGPCATALVFGREESGLTEAELRLCSYASAIPTGRVQPSMNLS 187

Query: 159 QAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKM 218
            AV  ++ E          +        A   E +             G           
Sbjct: 188 HAVAAVLAELFSRRCGLLAEVELLLRKVAAIAEAVGMSGAESKGGGNNGNHGRRRLP--- 244

Query: 219 LDDLYSIFIRPELMREEVFLLR----GIVSTLDKFSRQSSRRNNVLLQKTEKSE 268
           L  L ++  R  +   E   L     G++  L+      +R+     ++ ++ +
Sbjct: 245 LGHLRAVVSRARVNAAESRSLHGLASGVLQRLEPGHPLEARKAQRKQEQQKEPQ 298


>gi|145350500|ref|XP_001419642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579874|gb|ABO97935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 344

 Score =  141 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 38/200 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL-TQLRLVNP-----RDGWP-------SEKARSSSAN 63
            +L  P+   N+G  AR + NF+L + LR+V P     RD           E A   + +
Sbjct: 3   FVLCAPEGPLNVGAAARVIQNFSLPSSLRVVRPSASVLRDDDDGASAPRLHEDAYKFAVH 62

Query: 64  ADCVIDSVR-VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A  ++D       ++ EA+A+   + ATTAR R N   +L    A   + + I  G    
Sbjct: 63  AKWMLDDCCARGESVLEAVAEASLVVATTARPRENL-PLLTLGAACEKMRDEIARGGKCA 121

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNP-----------LFP------------SLNISQ 159
           I+FG ER GLTNEE+ L+   +S P +             +             SLN+  
Sbjct: 122 ILFGNERTGLTNEELELAEFGVSIPTSATVGTSAMARRNKYSGGAGVDGSQTATSLNLGM 181

Query: 160 AVLLMVWECMENSIVSSEKN 179
           AV ++ +E         E +
Sbjct: 182 AVGVVAYELFSQVHAVREDD 201


>gi|302348245|ref|YP_003815883.1| rRNA methylase [Acidilobus saccharovorans 345-15]
 gi|302328657|gb|ADL18852.1| rRNA methylase [Acidilobus saccharovorans 345-15]
          Length = 245

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 7/176 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V  +   N+G + R   NF + +L LV+P       ++   +A A  +     V  +L
Sbjct: 8   VAVGIEGPVNLGYIFRLSENFEVDELYLVSPTASV--AESLRWAAKASDMAWKATVVGSL 65

Query: 78  KEAIADLHFIYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           KEA+ D+     T+  +  R+  +S ++P++AA ++   I     V ++ GRE  GLT +
Sbjct: 66  KEALRDVELSVCTSDESSARDLLRSPVSPEQAAELM---IARKGTVALVVGRESVGLTRD 122

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           E+A  + + + P +P + +LN+S A  ++++E  +    S E     + T A    
Sbjct: 123 ELAQCDLLCTIPASPKYTALNVSNATAVLLYEIYKARRKSPEYEPPSRKTIALAEA 178


>gi|289803175|ref|ZP_06533804.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 115

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE---KNVKEQNTPATKGELLSFLDY 198
             ++   NP + SLN++ AV ++ +E     + + E       E+       +L  F  +
Sbjct: 2   YHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGH 61

Query: 199 LEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           LE +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++ ++
Sbjct: 62  LEQTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNK 113


>gi|42524890|ref|NP_970270.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39577100|emb|CAE78329.1| RNA methyltransferase, TrmH family, group 1 [Bdellovibrio
           bacteriovorus HD100]
          Length = 261

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 18/251 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             I+LV      NIG  +RAM N  + +L L++P+     E A+ ++A     + +   +
Sbjct: 7   IRIVLVRTIYERNIGATSRAMSNMGIEKLILIDPKCEITYE-AQQAAATGQTGLQNRTTY 65

Query: 75  SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-------NVGIIF 125
           ++  E +         A TAR+    + V    E    + ++    Q        V ++F
Sbjct: 66  ASWDEFMKQEPESIKVAFTARDGKG-RQVRDVDEVLKDIADKAPQFQVESDVPYVVHLVF 124

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           G E WGL  E++  +N     P      SLN++QA LL ++           K    +  
Sbjct: 125 GPEDWGLAGEDLEHANFCACIPTFGDNWSLNLAQATLLGMYSLRRTWGGQRTKLDGGKVR 184

Query: 186 PATKG----ELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRG 241
            A +G    +  + L      LEE G+    ++K  +   L  + ++    ++E+ +L  
Sbjct: 185 RAPQGIDGIDPEATLKTW---LEEMGFDLTRQRKINVFTVLRRMLLQNTPTKKELVILET 241

Query: 242 IVSTLDKFSRQ 252
           ++    +  R+
Sbjct: 242 VLQQSIRKLRE 252


>gi|116878435|ref|YP_842169.1| rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM 2380]
 gi|114843071|gb|ABI81848.1| predicted rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM
           2380]
          Length = 166

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 2/126 (1%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   +ILV+PQ   NIGMVARAM NF +++LRLVNP   +   +AR  +  A  ++   R
Sbjct: 7   KRIRVILVEPQSPGNIGMVARAMGNFGVSELRLVNP-CTYLHPEARKFAVRAAPLLGKAR 65

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           VF +L  A+ADL    A T R       +L     A  L   + + + VG++FGRE  GL
Sbjct: 66  VFPDLASALADLPMSVAATRRAGKLRGELLD-VADAARLAAGLPAVEGVGLVFGREDAGL 124

Query: 133 TNEEIA 138
           T++E++
Sbjct: 125 TSDEVS 130


>gi|308808149|ref|XP_003081385.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
 gi|116059847|emb|CAL55554.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
          Length = 666

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 33/226 (14%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD----GWPSEKARSS 60
           A       +  V +L  P+   N+G  +RAM NF    LRLV+PR     G    +AR  
Sbjct: 39  AHSPPPPLRDVVFVLCRPEGAINVGTASRAMHNFGANDLRLVDPRCVDAGGRIDAEARMF 98

Query: 61  SANA-DCVID---SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +A   D V++        +++  A  D   + AT  R R N   V++ +E A  + E + 
Sbjct: 99  AARGLDAVLERDGRTTTTTSVSAATMDATLVVATCPRPRENV-PVVSLREGARRVAEEVA 157

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF---------------------PSL 155
            G  V ++FG E+ GL+N+E+  +   +  P                           SL
Sbjct: 158 RGGRVAVLFGTEKSGLSNDEMEHAQFAVCVPTAANVNARGFTKYTGGASGGETDTSSMSL 217

Query: 156 NISQAVLLMVWECMENSIVSSEKNVKEQNTPA---TKGELLSFLDY 198
           N+  AV ++ +E            V  +   +   T  E    +D 
Sbjct: 218 NLGMAVGIVAYELFMAITDVRGDEVSVRGFASHRMTTAERERLIDD 263


>gi|302835032|ref|XP_002949078.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f.
           nagariensis]
 gi|300265823|gb|EFJ50013.1| hypothetical protein VOLCADRAFT_104150 [Volvox carteri f.
           nagariensis]
          Length = 393

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 67/101 (66%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
             P IILV+P++GENIG  ARAM NF L+ LRLV P DGWP+  A + +++A  ++ S R
Sbjct: 5   PQPSIILVEPKMGENIGAAARAMKNFGLSDLRLVKPHDGWPNTLADAVASHAVDLLRSAR 64

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
           ++ ++++AIADL  +YA TAR R   K+ +  ++    L +
Sbjct: 65  LYDSVEDAIADLDRVYAATARTRYMTKAFVTSRQLPGDLRQ 105



 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 27/169 (15%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                G++FGRE  GLTNEE+A +N ++    +P +P LN++QAVL  V+E     + + 
Sbjct: 224 RAPRAGVLFGREASGLTNEEVAAANKVLCIEAHPDYPVLNLAQAVLCTVYELYNARLDAV 283

Query: 177 EKNVKEQN--------------------------TPATKGELLSFLDYLEISLEERGYFR 210
                 +                             A+ GE+ +FL  L   L++  +F 
Sbjct: 284 AGASSVEAAAAAGGGGAVAVGSNAEELRARAAAVQLASHGEVENFLRRLVSELDDVNFFE 343

Query: 211 PVEKKKKMLDDLYSIFIRPE-LMREEVFLLRGIVSTLDKFSRQSSRRNN 258
              K+   +  + ++  + E L   EV LL GI+S L   +R  +R   
Sbjct: 344 SASKRPATMLSIRNLVAKAEGLTASEVALLHGILSKLTTAARARARVQG 392


>gi|308799711|ref|XP_003074636.1| unnamed protein product [Ostreococcus tauri]
 gi|116000807|emb|CAL50487.1| unnamed protein product [Ostreococcus tauri]
          Length = 384

 Score =  132 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 60/219 (27%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNP--------------- 48
            + +   +    +L  PQ   N+G  ARAM NF + +L+L  V P               
Sbjct: 49  REQRPELENVRFVLCAPQGAANVGACARAMQNFGVYELKLCEVGPNVLERDDAGETAATR 108

Query: 49  --------------------------RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
                                     +    S +A   +  AD +++     ++++ A+A
Sbjct: 109 GTESDAERILDEASEGEGKTPERAANQTLPLSAEALRYACAADWMLEDAERCADVEAALA 168

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F+ ATTAR R     ++  +EAA  + E    G  V ++FG ER GLTNEE+A ++A
Sbjct: 169 GCTFVLATTARPRTGT-PLMTAREAAKKVAEEAKRG-KVAVLFGNERTGLTNEELAWASA 226

Query: 143 IISFPVNPL---------F------PSLNISQAVLLMVW 166
            +  P             +       SLN+S AV ++  
Sbjct: 227 AVVVPTAGAGKLCRKSLKYTGATGPTSLNLSHAVGIIAH 265


>gi|258619945|ref|ZP_05714985.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
 gi|258587678|gb|EEW12387.1| tRNA methyltransferase trmJ [Vibrio mimicus VM573]
          Length = 112

 Score =  132 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKGELLSFLDYLEI 201
           +  P NP + SLN++ AV L+ +E     +    S+   +++       EL  F ++LE 
Sbjct: 1   MCVPANPEYSSLNLAMAVQLLSYEVRMAYLSVEQSQSRAQQEEEYPRHQELELFYEHLEK 60

Query: 202 SLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
            + +  +    ++  ++++ L  +F R     +E+ +LRGI++++ K
Sbjct: 61  VITQTEFI-SAQQPGQVMNKLRRMFTRARPEAQEINILRGILTSVQK 106


>gi|323159255|gb|EFZ45242.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain
          protein [Escherichia coli E128010]
          Length = 84

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           +   I+LV+     N+G VARAM    LT L LVNP    P  +A + +A A  VI + 
Sbjct: 2  LQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK-PDSQAIALAAGASDVIGNA 60

Query: 72 RVFSNLKEAIADLHFIYATTARNR 95
           +   L EA+A    +  T+AR+R
Sbjct: 61 HIVDTLDEALAGCSLVVGTSARSR 84


>gi|330814239|ref|YP_004358478.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487334|gb|AEA81739.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 126

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 72/126 (57%)

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           +FG E  GL+NE++  +N ++  P +  + SLN+S AV ++ +    +       N  ++
Sbjct: 1   MFGPENAGLSNEDLISANYLLKIPSDAKYESLNLSHAVSVVAYNLYTSKQKKIIYNNTDK 60

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIV 243
           +    K +L  F D+L  +LE+  +FRP+EKK+ M+  + +IF +  L + E+  L GI 
Sbjct: 61  SEIVGKSDLFKFYDFLIGNLEKTRFFRPIEKKEFMVKSIKNIFSQQPLTKRELKTLMGIF 120

Query: 244 STLDKF 249
           S+L K+
Sbjct: 121 SSLKKY 126


>gi|255084313|ref|XP_002508731.1| predicted protein [Micromonas sp. RCC299]
 gi|226524008|gb|ACO69989.1| predicted protein [Micromonas sp. RCC299]
          Length = 506

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 47  NPRDGWPSE------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS 100
           NP D   S       +A   +  AD ++   +      EAI+D  F+ ATTAR R N   
Sbjct: 169 NPADDPASPAPPLCDEAYRFACAADWLLADAKRCDTALEAISDCTFVMATTARPRGNV-P 227

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL--------- 151
           ++  + AA +L +    G  V ++FG ER GLTNEE+A ++A ++ P             
Sbjct: 228 LVTARVAAEMLAKEAKRG-KVAVLFGNERTGLTNEELAQAHACVAIPTAGQGTLCRRSLK 286

Query: 152 F------PSLNISQAVLLMVWECMENSIVSSEKNVK 181
           +       SLN+SQAV ++ +E    +  ++    +
Sbjct: 287 YTGGTGPTSLNLSQAVGVLAYEMFMAADAANGVGTR 322


>gi|330814240|ref|YP_004358479.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487335|gb|AEA81740.1| tRNA:Cm32/Um32 methyltransferase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 108

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/96 (42%), Positives = 60/96 (62%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S K   I+L+ PQ+GENIG  ARAM NF L++L +VNP++ WP+ KA  +S  A  +I  
Sbjct: 2   SLKNISIVLIKPQIGENIGATARAMKNFGLSKLAIVNPKEKWPNTKAVYTSVKAVDIIHK 61

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
            +VF +  +A+     ++ATTAR RN  K + +  E
Sbjct: 62  AKVFKSTSDALRKSDIVFATTARIRNLNKKIYSLDE 97


>gi|326566609|gb|EGE16752.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
          Length = 235

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 46/232 (19%)

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---- 118
            A  ++D   +  ++K AI D   I+A +AR+R   + VL P  AA V  +++       
Sbjct: 1   GAGILLDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQTVSKN 60

Query: 119 --------------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
                                 + I+FGRE  GLTNEE++L++  I  P N  +P LN++
Sbjct: 61  TLATSLDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPVLNVA 120

Query: 159 QAVLLMVWECMENSIVSSEKNV----------------------KEQNTPATKGELLSFL 196
            A+ ++     +    +   +                        + + PA      + L
Sbjct: 121 SAIQVITATFFDQFASTLTPSSLVSTKQIQGMPKEEYSLPIHIRSDWDEPAITQAQSANL 180

Query: 197 DYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +   I+L +R      +  K + + L  +  R +L ++E  L+R +++ +++
Sbjct: 181 ESAIITLMQRLNLAHDDDLKHLPNRLSRLNRRLQLDQKEYALVRALIAKINQ 232


>gi|213580755|ref|ZP_03362581.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 101

 Score =  119 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 155 LNISQAVLLMVWECMENSIVSSE---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRP 211
           +N++ AV ++ +E     + + E       E+       +L  F  +LE +L   G+ R 
Sbjct: 1   MNLAMAVQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIR- 59

Query: 212 VEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
                ++++ L  +F R     +E+ +LRGI++++++ ++
Sbjct: 60  ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNK 99


>gi|167621113|ref|ZP_02389744.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis Bt4]
          Length = 128

 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARAARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF 98
            AD V+ S  V   L +A+  + +  A TAR+R   
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSREYG 115


>gi|224003205|ref|XP_002291274.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973050|gb|EED91381.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 167

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 38  FNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA--- 92
                L LV P D      +K    ++ A  V+ + + +S L +A+   + +  T     
Sbjct: 1   MGFNDLTLVKPHDLKVLHRQKVIQRASGAMDVLTNAQTYSTLDDAVDGFNVVCGTGMPFD 60

Query: 93  -RNRNNFKSVLAPKEAAIVLNERIFSGQ----------------NVGIIFGRERWGLTNE 135
                  +  + P+     L   + +                   + ++FG E+ G+T  
Sbjct: 61  MYQTRLEREYVEPRIYFDGLISNVIANNHSTDDTNDRHQHSNSIRLALVFGSEKTGMTES 120

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++   + ++  P NP F SLN++ AV L+ ++    
Sbjct: 121 DMDTCHVMLGIPTNPQFGSLNLAAAVQLIAYDWRVA 156


>gi|308802576|ref|XP_003078601.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
 gi|116057054|emb|CAL51481.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
          Length = 232

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 10/183 (5%)

Query: 2   TPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +  A  L N A G V ++   P++  N+G  AR+   F    LRLV P     S  A S+
Sbjct: 46  SDPARALVNPALGDVAVVFCSPKIASNVGAFARSCAAFECVDLRLVTPACDAGSRAALSA 105

Query: 61  SANADCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF- 116
           +  A  ++        F  L EA+       A       +    +   +   + +     
Sbjct: 106 AKGAQGLVRVASSSGTFDTLVEALVGCSSAVAFHPWPSGDVDGAVTFDDLEALADAFPGG 165

Query: 117 --SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV---WECMEN 171
              G  + ++FG E  GLT EEIA  +A+ + P+  L  SL+++ A ++ +   +E    
Sbjct: 166 DVEGGKLALVFGNEADGLTKEEIAACDAVCTIPMGRLVESLSVTHAGVIALSRYYERRVR 225

Query: 172 SIV 174
           + V
Sbjct: 226 AGV 228


>gi|167720293|ref|ZP_02403529.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei DM98]
          Length = 112

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           A   +        +LV+P    N+G  ARA+     ++L LV PR        +A + ++
Sbjct: 20  ARTARGGFTSTRFVLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMAS 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95
            AD V+ S  V   L +A+  + +  A TAR+R
Sbjct: 80  GADDVLASAHVVPTLADALNGVQWSLALTARSR 112


>gi|307106546|gb|EFN54791.1| hypothetical protein CHLNCDRAFT_52745 [Chlorella variabilis]
          Length = 302

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 39/219 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P             ++LV P+   ++G VAR++  F    LR+V P     +  +R+ S 
Sbjct: 68  PVQLDPPPLLHDVCVVLVSPKRPISVGTVARSLSCFECLDLRIVEPCCDQLARSSRNGSK 127

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATT----ARN---RNNFKSVLAPK---------- 105
            A  ++   +    L+ A+A + F  A T     R    R+  + + AP+          
Sbjct: 128 GAQFLLWQAQRHGTLESALAGVSFSVACTRWVAGRPSAYRSMAELLAAPQIVALLSPSHL 187

Query: 106 EAAIVLNERIFSGQNV----------------------GIIFGRERWGLTNEEIALSNAI 143
           E A        +G ++                       ++FGRE  GLT  E+ + +A 
Sbjct: 188 EPAAATKHDGNAGGSIGALAQQQQQQLPQQRQPGQRKLALVFGREVSGLTAAEVDMCDAT 247

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +S P+  L  S+++S AV +++    E   ++    V +
Sbjct: 248 LSIPIGRLQESMSLSHAVSVVLSRLFEQRALAGSYAVPQ 286


>gi|237806517|ref|ZP_04593221.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027630|gb|EGI07685.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 76

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 22 PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
               NIG  ARAM N  L++L LV PR  +PS  A + ++ A  ++++ +V + L+EA+
Sbjct: 1  TTHPGNIGGAARAMKNMGLSRLVLVEPR-IFPSPDADARASGATDILEAAQVVATLEEAL 59

Query: 82 ADLHFIYATTARNRNNF 98
               +  T+AR+R+  
Sbjct: 60 VGCRLVLGTSARDRSLP 76


>gi|307108600|gb|EFN56840.1| hypothetical protein CHLNCDRAFT_144422 [Chlorella variabilis]
          Length = 365

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 114/354 (32%), Gaps = 102/354 (28%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P   +L     G  ++LV P+   NIG V RA  NF    + +V+ R      +   +S
Sbjct: 11  PPLCSELPLLLTGVRVVLVSPKTPANIGAVLRAAENFEAHDVVVVDARCDARCGEVEVTS 70

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV--------LAPKEAAIVLNE 113
            N+  V+ S+R+   L +A+AD       T R+                 P     +L +
Sbjct: 71  CNS-HVMHSMRLVPTLADALADCSGSIGFTRRSGAGRVVHASLPQLLARFPAAVPALLGD 129

Query: 114 -----------------------------------RIFSGQNVGIIFGRERWGLTNEEIA 138
                                                     V ++FGRE  GL   E+ 
Sbjct: 130 PQQQAAAQQGERQAATPPGAGQPAASGTAGTAAAGAAAPAGPVALVFGREESGLLESELL 189

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM----------------------------- 169
           L +   S P     PSLN+S AV +++ +                               
Sbjct: 190 LCSHACSIPTGRSQPSLNLSHAVAVVLAQLFDIQQQRLLLAEQAQEQRQQQEQQQLPGAF 249

Query: 170 ----------ENSIVSSEKNVKEQNTP---------ATKGELLSFLDYLEISLEERGY-- 208
                       ++ +     +++ T          A++ EL S L  +   LE  G   
Sbjct: 250 GAPALGPSAVAQALAAGGSLFEDERTRWRRQQALQVASQAELESLLLRVAALLEAAGISA 309

Query: 209 --------FRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
                        +KK+++  + S+ +R +    EV  L G+   L++  R  +
Sbjct: 310 EESIGGGDKSNHGRKKRLMGHVRSLLLRSQASTVEVRSLHGLCKELERRQRGQA 363


>gi|213622389|ref|ZP_03375172.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 95

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 161 VLLMVWECMENSIVSSE---KNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKK 217
           V ++ +E     + + E       E+       +L  F  +LE +L   G+ R      +
Sbjct: 1   VQVIAYEVRMAWLATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIR-ENHPGQ 59

Query: 218 MLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +++ L  +F R     +E+ +LRGI++++++ ++
Sbjct: 60  VMNKLRRLFTRARPESQELNILRGILASIEQQNK 93


>gi|260892338|ref|YP_003238435.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
           KC4]
 gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
           KC4]
          Length = 152

 Score =  105 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+LV+P++  N G +AR       T L LV P   +  ++    +         V+++  
Sbjct: 3   IVLVEPEIPANTGNIARTCAATGAT-LHLVRPLGFYTDDRHLRRA--GLDYWHLVKIYYH 59

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +   A  D  F   TT R    +  V  P                  ++FG+E  G
Sbjct: 60  DSFADLCRAYPDACFFL-TTTRAERWYTQVRYP--------------PGSFLVFGKESTG 104

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L  E +    +  I  P+ P   SLN++ AV ++++E +       
Sbjct: 105 LPEEILQAFPDRWIRIPMVPGARSLNLANAVAIVLYEALRQQGFPG 150


>gi|71065779|ref|YP_264506.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71038764|gb|AAZ19072.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
          Length = 186

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 23/177 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G + R   N    QL LV P      +K    +       +    +V 
Sbjct: 5   IVLVAPKMPSNTGNIIRLCANSG-AQLHLVKPLGFELDDKKLRRA--GLDYHEYAHLQVH 61

Query: 75  SN-------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIF 125
            +       L++A  D H I A T       K             E    FSG NV ++F
Sbjct: 62  DDWSVAKQALQDA--DCHTITALTT---KLSKPFYDYDFGGQETAESGSEFSGNNVAMVF 116

Query: 126 GRERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           G E  GL +   E+I  ++  +  P+     SLN+S +V + ++E       S ++ 
Sbjct: 117 GSETAGLADDIREDIG-ADNWLRLPMLADSRSLNLSNSVAICLYEVWRQQGFSGDEG 172


>gi|93005998|ref|YP_580435.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393676|gb|ABE74951.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 186

 Score = 99.4 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 23/177 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G + R   N    QL LV P      +K    +       +    +V 
Sbjct: 5   IVLVAPKMPSNTGNIIRLCANSG-AQLHLVKPLGFELDDKKLRRA--GLDYHEYAHLQVH 61

Query: 75  SN-------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIF 125
            N       L++A  D H I A T       K             E    FSG NV ++F
Sbjct: 62  DNWSIAKQALQDA--DCHTITALTT---KLSKPFYDYDFGGQETAESGSDFSGNNVAMVF 116

Query: 126 GRERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           G E  GL +   E+I  ++  +  P+     SLN+S +V + ++E         ++ 
Sbjct: 117 GSETAGLADDIREDIG-ADNWLRLPMLADSRSLNLSNSVAICLYEVWRQQGFGGDEG 172


>gi|121535177|ref|ZP_01666993.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
           carboxydivorans Nor1]
 gi|121306286|gb|EAX47212.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
           carboxydivorans Nor1]
          Length = 153

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR        +L LV P      ++    +      +  V    N
Sbjct: 4   IVLVEPEIPGNTGNIARLCAAT-CCELHLVKPLGFSTDDRHLKRAGLDYWHLVKVHYHEN 62

Query: 77  LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +E     A  +F + TT       K     +  A  +           ++FG+E  GL 
Sbjct: 63  FQEVADRYAGHNFYFNTT----KAQKRYTDIRYTAGDV-----------LVFGKETAGLP 107

Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            EE+  +N    I  P+     SLN+S AV ++ +E +  
Sbjct: 108 -EELLRANWPNCIRIPMLEDARSLNLSNAVAVVAYEALRQ 146


>gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 154

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++ A    A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVKPL-GFRTDDATLKRAGLDYWYAVHIEYHE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+ ++E   +  F YATT  N+                ++  F   +  ++FG+E  GL
Sbjct: 63  SFAEVQEKYQEGRFFYATTKANQRY--------------SDIAFQDGD-FLVFGKETKGL 107

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +A  ++  I  P++    SLN+S +  ++V+E +  
Sbjct: 108 PPELLAANADTCIKMPMSDKVRSLNLSNSAAIIVYEALRQ 147


>gi|213863204|ref|ZP_03386459.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score = 96.7 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +   V ++FGRER GLTNEE+   +  ++   NP + SLN++ AV ++ +E     + +
Sbjct: 8   AANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAWLAT 67

Query: 176 SEKNVKEQNT 185
            E   + ++ 
Sbjct: 68  QENGEQVEHE 77


>gi|313895570|ref|ZP_07829126.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320528960|ref|ZP_08030052.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis
           F0399]
 gi|312975696|gb|EFR41155.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320138590|gb|EFW30480.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis
           F0399]
          Length = 162

 Score = 95.5 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR      + +L LV P       K    +      + +V     
Sbjct: 3   IVLVEPEIPGNTGNIARLCAGTGI-ELHLVRPLGFSTDNKYLKRAGLDYWHLVTVHYHDR 61

Query: 77  LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             E +       F + +T  +R +      P               +  ++FG+E  GL 
Sbjct: 62  FDEVLEMYPNRTFYFCSTKASRTHCDVAYPP---------------DAFLVFGKESAGLP 106

Query: 134 NEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++ +A   +  I  P+     SLN+S AV ++ +E +  
Sbjct: 107 HDLLAAHRDRTIRIPMASGARSLNLSNAVAVVAYEALRQ 145


>gi|57242225|ref|ZP_00370164.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter
           upsaliensis RM3195]
 gi|57016905|gb|EAL53687.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter
           upsaliensis RM3195]
          Length = 154

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L ++ P     SEKA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNVGF-KLHIIKPCVFDLSEKAVKRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIA---DL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +L+E +         F +ATT     + K   + K  A              + FG E 
Sbjct: 61  ESLEEFLRSNLQCKERFFFATT----KSKKPYFSVKFRAGDF-----------LFFGSES 105

Query: 130 WGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL NE + L+ A  I+ P+ P   SLN++ +V ++ +E +  
Sbjct: 106 FGLPNELMNLNEAHQITIPMKPYGRSLNLATSVGIVSYEALRQ 148


>gi|220931942|ref|YP_002508850.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
           H 168]
 gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
           H 168]
          Length = 162

 Score = 95.1 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 72/170 (42%), Gaps = 26/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+LV+P++ +N G +AR       + L L+ P      ++    +       D + ++  
Sbjct: 3   IVLVEPEIPQNTGNIARTCAVTG-SSLHLIEPLGFSIDDRYLKRA--GLDYWDKLDIYYY 59

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L+E      D +F +ATT                A    + +   +N  I+FG+E  G
Sbjct: 60  DSLEELMKKYKDSNFYFATT---------------KAPKSYDIVSYQENDFIVFGKETAG 104

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           L  E +  +N    I  P+     SLN+S +V ++++E +        K+
Sbjct: 105 LP-ESLLKNNIENCIRIPMKDNTRSLNLSNSVAIILYEALRQLNFPGLKH 153


>gi|315638690|ref|ZP_07893864.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481314|gb|EFU71944.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
          Length = 154

 Score = 95.1 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L ++ P     SEKA   +       D ++  ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPCVFDLSEKAVKRA--GLDYWDKLKPMIW 60

Query: 75  SNLKEAIA---DL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +L+E +         F +ATT     + K   + +  A              + FG E 
Sbjct: 61  ESLEEFLGSNLQCKERFFFATT----KSKKPYFSVEFRAGDF-----------LFFGSES 105

Query: 130 WGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL NE + L+ A  I+ P+ P   SLN++ +V ++ +E +  
Sbjct: 106 FGLPNELMNLNEAHQITIPMKPYGRSLNLATSVGIVSYEALRQ 148


>gi|284048565|ref|YP_003398904.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
 gi|283952786|gb|ADB47589.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
          Length = 156

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 16/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR       + L LV P      +K    +      +  +  + +
Sbjct: 4   IVLVEPEIPGNTGNIARLCAATGAS-LHLVRPLGFSVDDKYLKRAGLDYWHLVDIHYYDS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++E +A             ++ + +L     A     R+  G +  +IFG+E  GL  E 
Sbjct: 63  VEEVLAAY----------PDSPRFLLT--THAHKSYSRVHYGPDSLLIFGKESAGLP-EA 109

Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++    +  P+     SLN++ +V ++++E +  
Sbjct: 110 FRQAHEEECVRIPMVSEARSLNLANSVSIVLYEALRQ 146


>gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
          Length = 153

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 29/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           ++LV+P++  N G +AR       T   L LV+P      +K    +         VR+ 
Sbjct: 8   VVLVEPEIPPNTGSIARLC---GATDTVLHLVHPLGFDTDDKHLKRA--GLDYWQHVRIV 62

Query: 75  --SNLKEAIA--DLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             SNL+E +A  D + +Y  +    R        P +                +IFGRE 
Sbjct: 63  HWSNLEEFLAAQDENRLYFLSKKTQRPYTAISFTPGDF---------------LIFGRET 107

Query: 130 WGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            GL  E + L ++  +  P+ NP   SLN++QA  ++++E +  
Sbjct: 108 KGLPAEILELYADRCLLIPMSNPHIRSLNLAQAAAIVLYEALRQ 151


>gi|319778873|ref|YP_004129786.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108897|gb|ADU91643.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 156

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 31/166 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVIDSV 71
           I+LV P++  N+G + R   N     L LV P      +K    +      +A     ++
Sbjct: 4   IVLVSPEMPANVGNIIRLSANTGC-NLHLVRPFLFHLDDKHLKRAGLDYHEHA-----NI 57

Query: 72  RVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++ + L+EA+     D +  +A + + +               L++  F   +V  IFGR
Sbjct: 58  KIHNTLEEALNTIGTDRNRCFAISTKGKK-------------HLSDINFQKGDV-FIFGR 103

Query: 128 ERWGLTNEE--IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  GL + E  I   +  +  P+     SLNIS AV + V+E    
Sbjct: 104 ESAGLKDYEWSIIGIDQAVRIPMKANSRSLNISNAVAITVYEAWRQ 149


>gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 153

 Score = 94.4 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 26/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G +AR       + L LV P      +K    +       D VRV   
Sbjct: 4   IVLVEPEIPYNTGNIARTCAATG-STLHLVKPLGFSTEDKYLKRA--GLDYWDKVRVIYH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F  L+E   +  F Y +T   R   +    P +                ++FG+E  G
Sbjct: 61  ENFQELREKYPEGRFFYLSTKGKRYYHEVSYKPGDF---------------LVFGKETQG 105

Query: 132 LTNEEIALSNAIIS--FPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +E+  +N   +   P+ P   SLN+S  V ++V+E +  
Sbjct: 106 LP-QELLEANKEFTFRIPMLPQIRSLNLSNTVAIVVYEALRQ 146


>gi|319956345|ref|YP_004167608.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319418749|gb|ADV45859.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 157

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G +AR   N    +L L+ P     SEKA   +         +   V+
Sbjct: 4   IVLVHPKIPPNTGNIARLCVNLG-AKLHLIEPLGFDISEKAVRRA--GLDYWKDLDLTVW 60

Query: 75  SNLKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +++  +A+       H   ATT   R  +++   P +                +IFG E
Sbjct: 61  ESIEAFLAEHPIDGHCHL--ATTKTERLYWEAEYHPGDW---------------LIFGSE 103

Query: 129 RWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GL  E +    +  I+ P++P   S+N+S AV ++ +E +  S
Sbjct: 104 TEGLPAELLQSRPDRCITIPMSPAGRSINLSVAVGIVAYEALRQS 148


>gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 164

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 23/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           ++LV+P++  N G +AR       T   L LV+P      +K    +       D +++ 
Sbjct: 19  VVLVEPEIPPNTGSIARLC---GATDTILHLVHPLGFKIDDKHLKRA--GLDYWDQIKIV 73

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             S+L   +         TA++    + +    + A  L   +       ++FG+E  GL
Sbjct: 74  NWSDLDAFL---------TAQDE---QRLHFLSKKADRLYTEVRFQPGDFLVFGKETKGL 121

Query: 133 TNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
             E +AL ++   + P+ NP   S+N++QA  ++++E +   
Sbjct: 122 PEETLALYADRCCAIPMSNPAIRSINLAQAAAVVLYEAIRQQ 163


>gi|152990479|ref|YP_001356201.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2]
 gi|151422340|dbj|BAF69844.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2]
          Length = 156

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 26/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV PQ+  N G + R   N   + L LV P     S+KA   +       + +  +V+
Sbjct: 4   IVLVHPQIPPNTGNIGRLCVNTG-STLHLVKPLGFDISQKAVKRA--GLDYWEKLDLKVW 60

Query: 75  SNLKEAIADLHFI---YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L E + + +     +ATT  ++  F+    P +                + FG E  G
Sbjct: 61  DSLDELLHNCNLSRAFFATTKSSKPYFQVQYQPGDF---------------LFFGSETKG 105

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +   +    ++ P+     SLN++ +V ++V+E +  
Sbjct: 106 LPMELMEK-HWEHAVTIPMTKEGRSLNLAVSVGVIVYEGIRQ 146


>gi|23345065|gb|AAN17743.1| unknown [Xenorhabdus nematophila]
          Length = 60

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 192 LLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +  F  + E  L E G+ R V    ++++ L  ++ R     +E+ +LRGI+++++K+++
Sbjct: 1   MERFYQHFEQVLSESGFIRKVH-PGQIMNRLRRLYTRARPETQELNILRGILTSMEKWAK 59

Query: 252 Q 252
           +
Sbjct: 60  K 60


>gi|147678560|ref|YP_001212775.1| rRNA methylase [Pelotomaculum thermopropionicum SI]
 gi|146274657|dbj|BAF60406.1| predicted rRNA methylase [Pelotomaculum thermopropionicum SI]
          Length = 152

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 22/167 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G +AR       T L L+ P  G+ +E      A  D   +  V    
Sbjct: 3   VVLVEPEIPANTGNIARTCAATGAT-LHLIKPL-GFSTEDRYLKRAGLDYWNLVRVLYHD 60

Query: 76  NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  E   +     F  ATT   R   +    P                  ++FG+E  GL
Sbjct: 61  SFGEFAASYRGCRFYLATTKARRLYTEVSYEP---------------GSCLVFGKETKGL 105

Query: 133 TNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +    +  I  P+     SLN++ AV ++++E +        K
Sbjct: 106 PPEILDGYPDGQIRVPMIDGARSLNLANAVAVVLYEALRQQGFPGLK 152


>gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 152

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 28/163 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+LV+P++ +N G +AR      LT+  L LV P     +++    +       D V V 
Sbjct: 3   IVLVEPEIPQNTGNIARTCA---LTKTALHLVKPLGFSLADRFLKRA--GLDYWDKVEVQ 57

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F +L EA     F  ATT R    +  V  P+++               ++FGRE 
Sbjct: 58  LWESFGDLLEANPGAAFYLATT-RAGQAYHQVSYPQDSW--------------LVFGRES 102

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL    +    +  I  P+  +  SLN+S +V ++++E +  
Sbjct: 103 SGLPISILKSFPDTQIRIPMQDIGRSLNLSNSVAIILYEALRQ 145


>gi|26417538|gb|AAM75409.1| probable methyltransferase PA3817 [Pseudomonas putida]
          Length = 61

 Score = 94.0 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 12 AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           +   ++LV+     NIG  ARAM N  L++L LV P+  +P  +A + ++ AD V+ + 
Sbjct: 2  LQNIRVVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPK-AFPDAEASARASGADDVLGNA 60

Query: 72 R 72
          +
Sbjct: 61 Q 61


>gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 156

 Score = 93.6 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 18/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV+P++  N G +AR         L LV P      +K+   +         ++  ++
Sbjct: 7   IVLVEPEIPPNTGNIARLCAVVG-ADLHLVKPLGFKTDDKSLKRA--GLDYWHRLKMTIY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +            ARN    + +   K   I        G    +IFGRE  GL+ 
Sbjct: 64  EDFDD----------FEARNPGGKRYLATTKGKIIYSETTFEEGCY--LIFGRETKGLSP 111

Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E +A     +I  P+     SLN+S AV ++ +E     
Sbjct: 112 EILARYPEHLIRLPMKNECRSLNLSNAVAIVTYEVFRQW 150


>gi|289677966|ref|ZP_06498856.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 85

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 175 SSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMRE 234
           +S          AT  E+  F  +LE +L   G+  P EK + ++  L  ++ R E+ R 
Sbjct: 1   ASRPASAHNAELATMDEMEGFYTHLEATLVAIGFLDP-EKPRHLMARLRRLYGRSEVERS 59

Query: 235 EVFLLRGIVSTLDKFSRQSSRR 256
           E+ +LRG+++   K +R    +
Sbjct: 60  ELSILRGVLTETQKAARGEPYK 81


>gi|227825173|ref|ZP_03990005.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226905672|gb|EEH91590.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 155

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 20/168 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR       + L LV P      ++    +      +  +  + +
Sbjct: 3   IVLVEPEIPGNTGNIARLCAATGAS-LHLVRPLGFSVDDRYLKRAGLDYWHLVDIHYYDS 61

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           ++E +A   D      TT  +R+  +                   ++  +IFG+E  GL 
Sbjct: 62  VEEVLAAYPDAPRFLLTTHAHRSYTRVEYT---------------KDSLLIFGKESAGLP 106

Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
               +A  +  I  P+ P   SLN++ +V ++++E +       E+  
Sbjct: 107 EAFRMAHEDECIRIPMVPEARSLNLANSVSIVLYEALRQVHFDLEEGT 154


>gi|292670912|ref|ZP_06604338.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
 gi|292647533|gb|EFF65505.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
          Length = 209

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR      +  L LV P      +K    +      +  V    +
Sbjct: 48  IVLVEPEIPGNTGNIARLCAGTGM-DLHLVRPLGFSTDDKYLKRAGLDYWHLVKVHYHDS 106

Query: 77  LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +         F + TT                A  +   I    +   +FG+E  GL 
Sbjct: 107 FSDVRKQYKGHPFYFCTT---------------KAAHIYSDIVYTSDAFFVFGKETEGLP 151

Query: 134 ------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 NEE       +  P+     SLN+S AV ++ +E +  
Sbjct: 152 ESLLEDNEE-----HTVRIPMQAGARSLNLSNAVAVVAYEALRQ 190


>gi|145345886|ref|XP_001417430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577657|gb|ABO95723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 233

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 24/191 (12%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
                  + +   +I   P+   N+G +ARA   F     R+  P          +++  
Sbjct: 47  ALEDPPGTLRDVCVIFCSPKTASNVGAMARACAAFECCDFRVATPLCDVECRACVNAAKG 106

Query: 64  ADCVIDSVR-VFSNLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERI------ 115
           A  ++       ++L++A+   +  +          F         A     R       
Sbjct: 107 AQWLVPRAADAHASLEDALRGTVGTVVG--------FHPWRLDDAEAEASRARFDDLAAL 158

Query: 116 --------FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                     G  + ++FG E  GL+  E+AL +A+ S P+  L  SL+++ A ++ +  
Sbjct: 159 TAAYPGGGEDGGKLALVFGNEADGLSERELALCDALCSIPMGRLIESLSVTHAAVIALSR 218

Query: 168 CMENSIVSSEK 178
             E    S+E 
Sbjct: 219 FFEAREASAEA 229


>gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 2360]
 gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum JW20]
 gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum ATCC 27405]
 gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 2360]
 gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum JW20]
 gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 1313]
          Length = 164

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++LV+P++ +N G +AR         L LV P      ++    +       D  +++ +
Sbjct: 5   VVLVEPEIPQNTGNIARTCAAVG-ANLHLVKPLGFSVEDRYLKRA--GLDYWDKVNIKYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  E             R++            A  L   +    +  I+FG+E  GL  
Sbjct: 62  DSFSEL------------RDKYKEHIFYYSTTKAQKLYTDVKYPDDCFIVFGKETAGLPE 109

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +       I  P+     SLN+S +V ++V+E +  
Sbjct: 110 ELLVENKEWCIRIPMRDDIRSLNLSNSVAIIVYEALRQ 147


>gi|323141072|ref|ZP_08075977.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414448|gb|EFY05262.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
           sp. YIT 12067]
          Length = 170

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 14/156 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR         L LV P      +K    +      +  +  + +
Sbjct: 14  IVLVEPEIPGNTGNIARLCAATGCH-LHLVRPLGFSVEDKYLKRAGLDYWHLVDIHYYDS 72

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + E +             ++N K  L  K  +      +   Q+  +IFG+E  GL    
Sbjct: 73  VYEVLEKY----------KDNPKYFLTTKAHSSY--ADVQYAQDSLLIFGKETAGLPETL 120

Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     + I  P+     SLN+S +V ++ +E +  
Sbjct: 121 LHEYPESCIRIPMIEDARSLNLSNSVAIVAYEALRQ 156


>gi|291544815|emb|CBL17924.1| rRNA methylase, putative, group 2 [Ruminococcus sp. 18P13]
          Length = 172

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV+PQ+ +N G +AR        +L L+ P     ++K    +       D + +  +
Sbjct: 6   IVLVEPQIPQNTGNIARTCAVTG-ARLHLIRPMGFTVTDKHLKRA--GLDYWDKLDITYY 62

Query: 75  SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  E  A     + + TT + R      + P               N  +IFGRE  GL
Sbjct: 63  DSFAEFSARNPGAYFFFTT-KGRKIHSDAVYP--------------NNAYLIFGREDQGL 107

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             E++  ++    +  P+     SLN+S +V + V+E +   
Sbjct: 108 P-EDLLFAHPEECVRIPMRNELRSLNLSNSVAIAVYEALRQW 148


>gi|297616863|ref|YP_003702022.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 152

 Score = 92.4 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 28/168 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           ++LV+P++ +N G VAR      LTQ  L LV P      ++    +       D V V 
Sbjct: 3   VVLVEPEIPQNTGNVARTCA---LTQTTLHLVKPLGFSLEDRYLKRA--GLDYWDKVEVK 57

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F NL        +  ATT   +                   +   +   I+FG+E 
Sbjct: 58  VWDSFDNLLAVYPGRSYFLATTKSKQRYT---------------DVRYKKGDFIVFGKET 102

Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GL  E +   S ++I  P+  +  SLN+S AV ++++E +       
Sbjct: 103 QGLPGELLERFSQSLIRIPMVDIGRSLNLSNAVAVVLFEALRQQGFPG 150


>gi|332978452|gb|EGK15166.1| RNA methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 183

 Score = 92.4 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 14/163 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P++  N G   R   N    QL LV P      +K    +        +++V  N
Sbjct: 5   IVLVHPRIPNNTGSAIRLCANTG-AQLHLVEPLGFDLEDKKLRRAGLDYHEYANMKVHKN 63

Query: 77  ---LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               KEA+  A    + A T +  + F       E     +      +N+ ++FG E  G
Sbjct: 64  WQAAKEALKAAGCERMVALTTKLSHPF------YEYDFSSSNEDSQQENIALVFGSETAG 117

Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L ++  E   ++  +  P+ P   SLN++ ++ + ++E     
Sbjct: 118 LADDIREDIGADNWLRLPMLPDSRSLNLANSISICLYEVWRQQ 160


>gi|148652780|ref|YP_001279873.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
 gi|148571864|gb|ABQ93923.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
          Length = 180

 Score = 92.0 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 21/165 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G   R   N    QL LV P      +K    +       +    +V 
Sbjct: 5   IVLVHPKIPNNTGSAIRLCANTG-AQLHLVEPLGFDLDDKKLRRA--GLDYHEYAAMQVH 61

Query: 75  SN---LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            N    KEA+  A  H + A T +  + F         A          +++ ++FG E 
Sbjct: 62  KNWQVAKEALQAAGCHKMVALTTKLSHPFYEYDFGDSNAAE-------HESIALVFGSET 114

Query: 130 WGLTNE---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL ++   +I  SN +   P+ P   SLN++ ++ + ++E    
Sbjct: 115 AGLADDIRADIGESNWL-RLPMLPDSRSLNLANSISICLYEVWRQ 158


>gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa
           SC2]
 gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa
           SC2]
          Length = 154

 Score = 92.0 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSVR 72
           I+LV+P++  N G +AR       T L LV P  G+ ++ A    A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVKPL-GFRTDDATLKRAGLDYWYAVHIEYHE 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+ ++E      F YATT                A      I       ++FG+E  GL
Sbjct: 63  SFAEVQEKYQAGRFFYATT---------------KAKQQYSDIKFQDGDFLVFGKETKGL 107

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +A   +  I  P++    SLN+S +  ++V+E +  
Sbjct: 108 PPELLAANPDTCIKMPMSDKVRSLNLSNSAAIIVYEALRQ 147


>gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 250

 Score = 92.0 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 24/182 (13%)

Query: 3   PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS 59
           P A  L    K   P+++L       N+G +AR    F L +L L  +P    PSE A  
Sbjct: 84  PAAADLTAWVKRCEPLLVLDRIGNAHNLGAIARTAAFFGLPRLILPRDPAAAQPSEAAYR 143

Query: 60  SSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
            +      ++  RV  +L   +     A    I A T   R                  +
Sbjct: 144 VAEGGMTHLELARV-DDLPAFLRSLVAAGYDVIGAAT---RGGLP------------QAQ 187

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             +G+ + ++ G E  GL+ E  A    +++ P +    SLN+S A  +++WE +  +  
Sbjct: 188 SHTGKPIALVLGNEEHGLSAEVAAACTRLVTIPGSGKVESLNVSVAGAVLIWELLVRAPR 247

Query: 175 SS 176
            +
Sbjct: 248 GT 249


>gi|291531994|emb|CBK97579.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum 70/3]
          Length = 168

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74
           I+LV+PQ+ +N G +AR        +L +V P  G+  +  +   A  D    +D +  +
Sbjct: 5   IVLVEPQIPQNTGNIARTCAVTG-ARLHIVKPM-GFQIDDKKLKHAGLDYWHYLD-ITYY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             L +      D  F Y TT        +    +                 I+FGRE  G
Sbjct: 62  DGLDDFFERNKDSEFFYFTT----KGRNTYCDAEYK-----------DKTYIVFGREDKG 106

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           L  E +       +  P+     SLN+S +V +  +E +        +N
Sbjct: 107 LPEELLFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQN 155


>gi|163859022|ref|YP_001633320.1| rRNA methylase [Bordetella petrii DSM 12804]
 gi|163262750|emb|CAP45053.1| rRNA methylase [Bordetella petrii]
          Length = 156

 Score = 91.7 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 13/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P++  N G   R   N    QL LV P      +     +         V+V   
Sbjct: 4   VVLVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDT 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A+A      AT A        + A    A      +  G +   +FGRE  GL++E 
Sbjct: 63  LEQALA------ATGA----PPAHIYALTTRAQRNVAEVAFGPDDVFVFGRETAGLSDEH 112

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +AL      +  P+     SLN+S AV + V+E    
Sbjct: 113 MALFAPQQCLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149


>gi|303241069|ref|ZP_07327578.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
           cellulolyticus CD2]
 gi|302591329|gb|EFL61068.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
           cellulolyticus CD2]
          Length = 164

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++ +N G + R        +L L+ P      +K    +       + V +   
Sbjct: 5   IVLVEPEIPQNTGNIVRTCAAVG-ARLHLIKPLGFSVEDKYLKRA--GLDYWNEVDISYY 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F  LKE      F YATT                A+     I    N  ++FG+E  G
Sbjct: 62  DSFQELKEKYTGCSFYYATT---------------KAVKNYAEIEYPDNCFLVFGKETKG 106

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +          I  P+     SLN+S +V ++V+E +  
Sbjct: 107 LPEDILVDNREWC---IRIPMIGEIRSLNLSNSVAIIVYETLRQ 147


>gi|302339393|ref|YP_003804599.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301636578|gb|ADK82005.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 163

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 16/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++ +N G +AR         L LV+P     S++    +      +  V    +
Sbjct: 8   IVLVEPEIPQNTGNIARTCGALG-ADLHLVHPLGFSTSDRYLKRAGLDYWHLLKVHHHDS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  + D               +++    + A +  + I     + ++FG+E  GL  EE
Sbjct: 67  LQAFLNDY------------GNENLYFVSKKAPLRYDHISYPDRLFLLFGKETAGLP-EE 113

Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   +    +  P+     SLN+S AV +M +E    
Sbjct: 114 LLRKHRDTTVRIPMVAEARSLNLSNAVAIMAYEVHRQ 150


>gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
 gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
          Length = 223

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 15/170 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P+++++D      NIG V R    F + ++ L       P  +   ++  A
Sbjct: 58  EEFKEARKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGA 117

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFS-GQNV 121
           +  +D  + F N ++A+ DLH           +   VLA ++     +L++ I    +  
Sbjct: 118 EFTVDW-KYFKNTQDAVNDLH----------KDGYVVLAIEQCEGSTMLDDLILEKDKKY 166

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            I+FG E  G+  E +   +  I  P      SLN+S    +++WEC   
Sbjct: 167 AIVFGNEVKGVQQEVVNSCDGCIEIPQYGTKHSLNVSVTAGIVLWECARR 216


>gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
           V453]
 gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
           V453]
          Length = 154

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR       T L LV P      +K    +         +    +
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDS 63

Query: 77  LKEAIA---DLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +E  A   D  + YATT A  R                           ++FG+E  GL
Sbjct: 64  FEELKALYPDGRYFYATTKATKRYMDIEYQD----------------GDFLVFGKETKGL 107

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +A  S   I  P+     SLN+S +  +MV+E +  
Sbjct: 108 PPELLAANSEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQ 147


>gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 154

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSVR 72
           I+LV+P++  N G +AR      +  L LV P  G+ ++ A    A  D      I+   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATGIH-LHLVRPL-GFRTDDATLKRAGLDYWYAVHIEYHD 62

Query: 73  VFSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            F  ++E  A   F +ATT A+ R                  +   G     +FG+E  G
Sbjct: 63  SFQEVEEKYAGSRFFFATTKAKKRYTDF--------------KFQDGD--FFVFGKETKG 106

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E + A  +  +  P+     SLN+S +  ++V+E +  
Sbjct: 107 LPPEILEAHPDTTMRMPMTDKVRSLNLSNSAAIIVYEALRQ 147


>gi|291558267|emb|CBL35384.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum V10Sc8a]
          Length = 168

 Score = 90.9 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74
           I+LV+PQ+ +N G +AR        +L +V P  G+  +  +   A  D    +D +  +
Sbjct: 5   IVLVEPQIPQNTGNIARTCAVTG-ARLHIVKPM-GFQIDDKKLKHAGLDYWHYLD-ITYY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             L +      D  F Y TT        +    +                 I+FGRE  G
Sbjct: 62  DGLDDFFERNKDGEFFYFTT----KGRNTYCDAEYK-----------DKTYIVFGREDKG 106

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           L  E +       +  P+     SLN+S +V +  +E +        +N
Sbjct: 107 LPEELLFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQN 155


>gi|325678609|ref|ZP_08158219.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
 gi|324109659|gb|EGC03865.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
          Length = 190

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 26/181 (14%)

Query: 1   MTPYAPQLQNSAKG---PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           ++P     +NS K      I+LV+P++ +N G ++R         L +V P      +K 
Sbjct: 10  LSPEHQPPENSPKRAHRLNIVLVEPRIPQNTGNISRTCAVTGAA-LHMVRPFGFEIDDKK 68

Query: 58  RSSSANADCVIDSVRVF--SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
              +       D + ++   NL++  A  +  F + TT + R        P++       
Sbjct: 69  LKRA--GLDYWDKLDIYYYDNLEDFFAKNEGEFYFFTT-KGRKVHSDAAYPED------- 118

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                + V I+FGRE  GL  EE+  ++    +  P+     SLN+S +V +  +E +  
Sbjct: 119 -----KPVYIVFGREDAGLP-EELLYAHPEECVRIPMRNTLRSLNLSNSVAIATYEVLRQ 172

Query: 172 S 172
            
Sbjct: 173 W 173


>gi|296133845|ref|YP_003641092.1| RNA methyltransferase, TrmH family, group 2 [Thermincola sp. JR]
 gi|296032423|gb|ADG83191.1| RNA methyltransferase, TrmH family, group 2 [Thermincola potens JR]
          Length = 152

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 20/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR       + L LV P      +K    +      +  +R + N
Sbjct: 3   IVLVEPEIPANTGNIARTCAVTG-SVLHLVKPLGFSVDDKHLKRAGLDYWHLLDIRYYEN 61

Query: 77  LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +E  A      F Y TT   +       +  +                ++FG+E  GL 
Sbjct: 62  FQELKAKYPASRFYYVTTKGKKFYTDVPYSADDF---------------LVFGKETAGLP 106

Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            E +   +   I  P+     SLN+S +V ++++E        S  
Sbjct: 107 KELLEENAEFCIRIPMINNVRSLNLSNSVAIVLYEAWRQQGFPSGT 152


>gi|260881101|ref|ZP_05403620.2| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
 gi|260849520|gb|EEX69527.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
          Length = 167

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            K   I+L++P++  N G +AR      + +L LV P      +K    +      +  V
Sbjct: 2   LKPLHIVLIEPEIPGNTGNIARLCAGTGI-ELHLVRPLGFSTDDKHLKRAGLDYWPLVKV 60

Query: 72  RVFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
               N  E     A  +F Y +T   R+  +      +                ++FG+E
Sbjct: 61  HYHDNFAEVQERYAGHNFYYLSTKAPRSYTEVHYTMDDM---------------LVFGKE 105

Query: 129 RWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             G+  E I  +N    +  P+ P   SLN+S +V ++ +E M      +      
Sbjct: 106 SAGIP-EPILKANWEHCVRIPMIPEARSLNLSNSVAVVAYEAMRQMDFQNLAEAGP 160


>gi|323702820|ref|ZP_08114479.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532208|gb|EGB22088.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           nigrificans DSM 574]
          Length = 152

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR       + L LV P      ++    +      +  +    +
Sbjct: 3   IVLVEPEIPANTGNIARTCSVTGAS-LHLVRPLGFSTDDRHLKRAGLDYWHLLDLHYHDS 61

Query: 77  LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+E         F Y TT   + + +    P +                ++FG+E  GL 
Sbjct: 62  LQELQEQYPNGRFWYFTTKGGKPHHRVQYRPDDF---------------LVFGKETAGLP 106

Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E ++ + +  +  P+     SLN+S +V + ++E +  
Sbjct: 107 REVLSQNPDYCLRIPMLETVRSLNLSNSVAIALYEALRQ 145


>gi|330836878|ref|YP_004411519.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748781|gb|AEC02137.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 172

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+LV+P++ +N G +AR         L LV P      EK    +         V +   
Sbjct: 5   IVLVEPEIPQNTGNIARTCAATG-AVLHLVKPYGFSLDEKHLKRA--GLDYWHLVEIHEY 61

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++      F+ AT  R+   F +  AP+         +  G+   ++FG+E  GL  
Sbjct: 62  ASLQD------FLIATEGRSLYYFST-KAPRSYCD-----VRFGEESWLVFGKETKGLP- 108

Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E++   +    +  P+     SLN+S +V +  +E +  
Sbjct: 109 EDLLAGHYASCLRIPMCGEARSLNLSNSVAIATYEVLRQ 147


>gi|189220282|ref|YP_001940922.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
           [Methylacidiphilum infernorum V4]
 gi|189187140|gb|ACD84325.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
           [Methylacidiphilum infernorum V4]
          Length = 161

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 15/166 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +G  ++LV PQ+ +N G +AR       ++L LV P      + A   +         VR
Sbjct: 8   QGLGVVLVAPQIPQNTGNIARICAAT-FSELHLVKPLGFSLEDAALRRA--GLDYWKEVR 64

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +F  L E         A   R R  F                   G    ++FGRE  GL
Sbjct: 65  LF--LWE---GWDHFTAANPRKRLLFFETGT---YPPYFTASFAPGDM--LVFGRETKGL 114

Query: 133 TNEEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   ++ S + I S P+ N    SLN++  V ++++E +   ++  
Sbjct: 115 SQRILSFSPHFIYSIPILNGKVRSLNLANCVSIVLYEALRQILLGK 160


>gi|317057821|ref|YP_004106288.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315450090|gb|ADU23654.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 207

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 23/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+LV+P++ +N G ++R         L +V P      +K    +       D + ++  
Sbjct: 47  IVLVEPRIPQNTGNISRTCAVTGAA-LHMVRPFGFEIDDKKLKRA--GLDYWDKLDIYYY 103

Query: 75  SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +N+++  A  D  + + TT + R      + P++  +             IIFGRE  GL
Sbjct: 104 NNIEDFFAKNDGAYFFFTT-KGRQVHSEAVYPEDRPVY------------IIFGREDAGL 150

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             EE+  ++    +  P+     SLN+S +V +  +E +   
Sbjct: 151 P-EELLYAHPDECVRIPMRNTLRSLNLSNSVAIATYEVLRQW 191


>gi|296113212|ref|YP_003627150.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295920906|gb|ADG61257.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326560205|gb|EGE10593.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           7169]
 gi|326562764|gb|EGE13060.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           103P14B1]
 gi|326564943|gb|EGE15145.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           46P47B1]
 gi|326566634|gb|EGE16776.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
 gi|326567874|gb|EGE17975.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           12P80B1]
 gi|326570284|gb|EGE20329.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
 gi|326571021|gb|EGE21045.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
 gi|326573319|gb|EGE23287.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           101P30B1]
 gi|326575785|gb|EGE25708.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           CO72]
 gi|326576865|gb|EGE26771.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           O35E]
          Length = 181

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 23/165 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L  P++  N G + R   N    QL LV P      +     +       +     V 
Sbjct: 11  IVLFSPKIPNNTGSIIRLCANTG-AQLHLVKPLGFELDDTRLKRA--GLDYHEYATLSVH 67

Query: 75  SNLKE---AIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            N +E   A+    +  I A T +    F              +       V ++FG E 
Sbjct: 68  DNWQETKSALKSLGVERIVAMTTKFSRPFYEYQF---------KLDNDQHKVALVFGSET 118

Query: 130 WGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  EE+     +N  +  P+ P   SLN++ +V + ++E    
Sbjct: 119 DGLP-EEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQ 162


>gi|167945591|ref|ZP_02532665.1| RNA methyltransferase, TrmH family, group 1 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 92

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 162 LLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDD 221
            L+ +E    S+  ++K ++     A+   L  F  +L  +LE+ G+  P +   K+L  
Sbjct: 1   QLLAYEVYLASLEEADKPLRAPREVASAEMLEGFHTHLAQALEDIGFADPRQS-DKLLRR 59

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSRR 256
           L ++F R    R+E+ +LRGI+S      R+S RR
Sbjct: 60  LRALFHRARPDRDEINILRGILSAAQ--GRKSMRR 92


>gi|255318834|ref|ZP_05360060.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|262378907|ref|ZP_06072064.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255304090|gb|EET83281.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|262300192|gb|EEY88104.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 158

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLFEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWEN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++E +A L     T     +    +                 + V ++ G E  GL  E+
Sbjct: 63  IEECLAHLQ----TKGIGIDAVYPLTT---KGFETPHTADLNRPVALLMGPETRGLP-EQ 114

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + L       I  P+ P   SLN+S A  ++V+E         
Sbjct: 115 VRLMFPEQHWIRLPMAPESRSLNLSNATAVIVYEAWRQQGFQP 157


>gi|225180845|ref|ZP_03734293.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168326|gb|EEG77129.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
           alkaliphilus AHT 1]
          Length = 152

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 16/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV+P++  N G V+R       T L LV P  G+  E+ +   A  D     +++V  
Sbjct: 3   IVLVEPEIPPNTGNVSRTCAVTG-TTLHLVEPM-GFSIEERQLKRAGLDYWQHLNLQVHE 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L+  +      YAT        ++              I   ++  ++FGRE  GL + 
Sbjct: 61  SLEHFLD-----YAT-------DRNCWFLSTKGKQSYTDIKYHKDDLLVFGRETAGLPDW 108

Query: 136 EIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +A      +  P+ P   SLN+S +V ++++E +       
Sbjct: 109 LLARYPQKCVRIPMGPDVRSLNLSNSVAIVLYEALRQQGFPG 150


>gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           HGF5]
 gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           HGF5]
          Length = 187

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR       T L LV P      +K    +         +    +
Sbjct: 38  IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDS 96

Query: 77  LKE--AI-ADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +E  A+  +  + YATT A  R                           ++FG+E  GL
Sbjct: 97  FEELQALYPEGRYFYATTKATKRYMDIEYQD----------------GDFLVFGKETKGL 140

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +A  +   I  P+     SLN+S +  +MV+E +  
Sbjct: 141 PPELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQ 180


>gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
           2032]
 gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
           2032]
          Length = 157

 Score = 89.7 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+LV+P++  N G +AR       T   L LV+P      +K    +         VR+ 
Sbjct: 11  IVLVEPEIPPNTGSIARLC---GATDTVLDLVHPLGFQIDDKHLKRA--GLDYWPHVRIN 65

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + +L   +                    L  K        R   G    +IFG+E  GL
Sbjct: 66  HWDSLDAFLQQAD----------ERHLHFLTTKTKRSYTEARFCPGDR--LIFGKETKGL 113

Query: 133 TNEEIAL-SNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171
             E + L S+  ++ P  NP   SLN++ A  ++++E +  
Sbjct: 114 PEEILTLYSDRCLTIPMTNPHIRSLNLAMAAGIVLYEALRQ 154


>gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           Y412MC10]
          Length = 154

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR       T L LV P      +K    +         +    +
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDS 63

Query: 77  LKE--AI-ADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +E  A+  +  + YATT A  R                           ++FG+E  GL
Sbjct: 64  FEELQALYPEGRYFYATTKATKRYMDIEYQD----------------GDFLVFGKETKGL 107

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +A  +   I  P+     SLN+S +  +MV+E +  
Sbjct: 108 PRELLAANAEHCIRMPMTDKVRSLNLSNSAAIMVYEALRQ 147


>gi|313893147|ref|ZP_07826724.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442500|gb|EFR60915.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 161

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 24/176 (13%)

Query: 17  IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P++  N G +AR           L L+ P      +K    +      +  V+V 
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N++E      D  + YATT     +        E    + +         ++FG E  G
Sbjct: 60  ENIEELYEKYPDRRYFYATTKAKHTHS-------EVNYEIGDM--------LVFGPESRG 104

Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           L    +    +  I  P+     SLN+S AV ++ +E M        K       P
Sbjct: 105 LPESLLEGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQLDYPDLKAEGNWIQP 160


>gi|77166275|ref|YP_344800.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
           19707]
 gi|254435470|ref|ZP_05048977.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
           AFC27]
 gi|76884589|gb|ABA59270.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
           19707]
 gi|207088581|gb|EDZ65853.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
           AFC27]
          Length = 161

 Score = 89.3 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 72/178 (40%), Gaps = 25/178 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L++P++  N G + R   N     L LV P      ++    +         V+V  +
Sbjct: 4   VVLLEPEIPPNTGNIIRLCANTG-AILHLVQPLGFELDDRRLRRAGLDYHEWAKVKVHPS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+  +       ++A + R +  +              ++        ++FG E  GL  
Sbjct: 63  LEHFLDKTQPRQLWACSTRGQQPY--------------DKANFHPGDALLFGPETRGLPR 108

Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           E  E  LS  ++  P+ P   SLN+S AV ++++E          +   +++ PAT+ 
Sbjct: 109 ELLETLLSRQVLRIPMEPTSRSLNLSNAVAVVLYEAWRQ------QGFAKKSKPATQK 160


>gi|294815551|ref|ZP_06774194.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443902|ref|ZP_08218636.1| putative tRNA/rRNA methyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328150|gb|EFG09793.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 179

 Score = 89.3 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      + +L L        + KA+      D  +D V+ F  L EA+ 
Sbjct: 32  QSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLD-VQTFETLPEAVE 90

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +        R        L   + A+ L+E   SG    I  G E  G++ + + + +A
Sbjct: 91  RV--------RADGYRLVGLELADEAVPLHEADLSGA-TCIAVGNEDHGISPQALGMCDA 141

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           +   P      SLN++ A+ +  +E           + 
Sbjct: 142 VAFIPQLGRVGSLNVATALAVACYEVRRQDWAGLPADA 179


>gi|254391080|ref|ZP_05006288.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197704775|gb|EDY50587.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 182

 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 10/158 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      + +L L        + KA+      D  +D V+ F  L EA+ 
Sbjct: 35  QSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLD-VQTFETLPEAVE 93

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +        R        L   + A+ L+E   SG    I  G E  G++ + + + +A
Sbjct: 94  RV--------RADGYRLVGLELADEAVPLHEADLSGA-TCIAVGNEDHGISPQALGMCDA 144

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           +   P      SLN++ A+ +  +E           + 
Sbjct: 145 VAFIPQLGRVGSLNVATALAVACYEVRRQDWAGLPADA 182


>gi|303290747|ref|XP_003064660.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453686|gb|EEH50994.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 447

 Score = 89.0 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 37/79 (46%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     ++LV  +   N+G +ARA   F    LRLV PR    +  + S++  A  ++  
Sbjct: 137 ALSDVAVVLVGTKKAGNVGAIARACGAFECEDLRLVAPRADPYTRASLSAAKGAQHIVHG 196

Query: 71  VRVFSNLKEAIADLHFIYA 89
             V+ ++++A+       A
Sbjct: 197 AGVYDDVEDALRGCDAAIA 215


>gi|300112981|ref|YP_003759556.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299538918|gb|ADJ27235.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus watsonii
           C-113]
          Length = 161

 Score = 89.0 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 19/173 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL++P++  N G + R   N     L LV P      ++    +         V+V  +
Sbjct: 4   VILLEPEIPPNTGNIIRLCANTG-AMLHLVQPLGFELDDRRLRRAGLDYHEWAKVKVHPS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+  +       ++A + R R+++              ++        ++FG E  GL  
Sbjct: 63  LEHFLVQTQPRQLWACSTRGRHSY--------------DKANFRPGDALLFGPETRGLPR 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           E + +     ++  P+ P   SLN+S AV ++++E       +S +    Q T
Sbjct: 109 ELLGILPPQQVLRIPMEPTSRSLNLSNAVAVVLYEAWRQQGFASSRKPATQKT 161


>gi|312897975|ref|ZP_07757384.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
           micronuciformis F0359]
 gi|310620900|gb|EFQ04451.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
           micronuciformis F0359]
          Length = 160

 Score = 88.6 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74
           +++V+P++  N G V+R     ++T L LV P  G+  E      A  D   ++D + V 
Sbjct: 3   VVMVEPEIPGNTGNVSRLCAANHIT-LHLVKPL-GFSLEDKYLKRAGLDYWDLLD-LHVH 59

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N +E      +  + Y TT  +++    V    +                ++FG+E  G
Sbjct: 60  ENFEEVQQQYPNSRYFYLTTKSDKSYTDIVFREDDM---------------LVFGKETKG 104

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +   ++     P+     SLN+S AV ++ +E +  
Sbjct: 105 LPEDLLKRNADYCFRIPMIDKARSLNLSNAVAIVSYEALRQ 145


>gi|302390100|ref|YP_003825921.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
           oceani DSM 16646]
 gi|302200728|gb|ADL08298.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
           oceani DSM 16646]
          Length = 160

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++ +N G +AR         L LV P      ++    +      +  VR +SN
Sbjct: 4   IVLVEPEIPQNTGNIARTCAATG-AVLHLVGPLGFSLEDRYLKRAGLDYWHLVDVRYYSN 62

Query: 77  ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               +E    +   + TT   +     +  P                  ++FG+E  GL 
Sbjct: 63  YSEFEEKNRGMPMFFLTTKAEKCYTDVIYEPGSY---------------LVFGKETAGLP 107

Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E+  +N    +  P+     SLN+S A  ++++E +  
Sbjct: 108 -LELLKANWERCVRIPMVDDARSLNLSNAAAIVLYEALRQ 146


>gi|325830711|ref|ZP_08164095.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1]
 gi|325487118|gb|EGC89561.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1]
          Length = 156

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+LV+P++ +N G +AR        +L LV P     ++K  + +       D V +   
Sbjct: 7   IVLVEPEIPQNTGNIARTCACTG-ARLHLVEPMGFRLTQKNLARAGC--DYWDEVDIVRW 63

Query: 75  ---SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                  EA A  +LH     T + R  F  V                G+   ++FGRE 
Sbjct: 64  PCTEAFFEAHAADELHL---FTGQARRGFGDV--------------AYGEGSFLVFGRES 106

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL    I A ++  +  P+     SLN+S AV +  +E +   
Sbjct: 107 RGLPLGLIEAHASRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150


>gi|78486290|ref|YP_392215.1| tRNA/rRNA methyltransferase (SpoU) [Thiomicrospira crunogena XCL-2]
 gi|78364576|gb|ABB42541.1| rRNA methylase family protein [Thiomicrospira crunogena XCL-2]
          Length = 154

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +P++ +N G + R   N     L L+ P     SEK    +      + +++  ++
Sbjct: 4   IILYEPEIPQNTGALIRLSANMG-AHLHLIQPYAFDLSEKKVRRAGLDYAELANLKEHAS 62

Query: 77  LKEAIADL--HFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+  +  +  + ++A TT   R   + V                      +FG E  GL 
Sbjct: 63  LEACLETIKPNRVFALTTKTERYYTEPVFE---------------NGDAFLFGPETRGLP 107

Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + I     +  ++ P+ P   SLN++ AV +M +E    
Sbjct: 108 KDVIESVPEDQRLTIPMIPGGRSLNLANAVSVMAYEAWRQ 147


>gi|186686113|ref|YP_001869309.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
 gi|186468565|gb|ACC84366.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
          Length = 153

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 16/160 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P ++LV+PQ+  N G +AR       T+L LV P     S++    +         V++ 
Sbjct: 2   PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLH 58

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +L EA   +H         R               ++ R  +     ++FG E  GL
Sbjct: 59  YHESL-EAFKTVHQ-------ERGGRWLGYTVGGNFSYVSFRYQADDW--LLFGSETTGL 108

Query: 133 TNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
               ++  +A +  P++ P   SLN+S +V + ++E    
Sbjct: 109 PPTILSDCDATLYIPMSQPGVRSLNLSVSVAIGLFETRRQ 148


>gi|157164727|ref|YP_001467080.1| RNA methyltransferase [Campylobacter concisus 13826]
 gi|112800448|gb|EAT97792.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Campylobacter
           concisus 13826]
          Length = 159

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 24/166 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV PQ+ +N G + R   N NL +L +V P     SEKA   +      I   +++ +
Sbjct: 4   IVLVHPQIPQNTGAIGRMCVNANL-KLHIVKPTVFDLSEKAVRRAGLDYWKILDPKIWES 62

Query: 77  LKEAI-ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L E + A+L     F +ATT  NR  + +   P +                I FG E  G
Sbjct: 63  LDEFLEANLSHKERFFFATTKTNRLYYDAKFEPGDF---------------IFFGGESTG 107

Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           L  E  +I   NAI + P+     SLN++ +  ++ +E +  +I  
Sbjct: 108 LPREFMDINFKNAI-TIPMGKEGRSLNLAMSAGIIAYEAIRQNISK 152


>gi|332654005|ref|ZP_08419749.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332517091|gb|EGJ46696.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 171

 Score = 88.6 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 20/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++ +N G +AR       ++L L+ P     SEKA   +      +  +RV+ N
Sbjct: 4   IVLVEPEIPQNCGNIARTCAAT-RSRLHLIEPLGFDISEKAVRRAGLDYWPMVDLRVYRN 62

Query: 77  LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+   A+        ATT   ++                +      N  + FG+E  GL 
Sbjct: 63  LEHFFAENPNPDLWLATTKAPQDYT---------GATFRD------NCYLFFGKETAGLP 107

Query: 134 NE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            E  +A  +  I  P+     SLN+S +V ++ +E +          V E
Sbjct: 108 EEFRLAHYDRCIRIPMRADARSLNLSNSVAILAYEALRQQGFPQLSGVGE 157


>gi|167750651|ref|ZP_02422778.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
 gi|167656330|gb|EDS00460.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
          Length = 168

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74
           I+L++PQ+ +N G +AR        +L +V P  G+  +  +   A  D    +D +  +
Sbjct: 5   IVLIEPQIPQNTGNIARTCAVTG-ARLHIVKPM-GFQIDDKKLKHAGLDYWHYLD-ITYY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             L +      D  F Y TT        +    +                 I+FGRE  G
Sbjct: 62  DGLDDFFERNKDGEFFYFTT----KGRNTYCDAEYK-----------DKTYIVFGREDKG 106

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           L  E +       +  P+     SLN+S +V +  +E +        +N
Sbjct: 107 LPEELLFHNKQHCVRIPMGSNMRSLNLSNSVAIGAYEVLRQWGFPELQN 155


>gi|302392645|ref|YP_003828465.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
           arabaticum DSM 5501]
 gi|302204722|gb|ADL13400.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
           arabaticum DSM 5501]
          Length = 152

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++  N G +AR       + L L+ P      EKA   +       D V V   
Sbjct: 3   IVLYQPEIPPNTGNIARTCACTGAS-LHLIRPLGFSTDEKAVRRA--GLDYWDKVDVNYY 59

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F  L+E  +D +F +AT               + A      I    +  ++FG+E  G
Sbjct: 60  DSFRELEEKYSDHNFYFAT---------------KFASKFYTEIEYKSDDFLVFGQETAG 104

Query: 132 LTNEEIAL----SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E            I  P+     +LN++ +V ++++E +  
Sbjct: 105 LPEEITERYKENC---IRIPMLKEVRALNLANSVSIILYEALRQ 145


>gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
 gi|48425869|pdb|1V2X|A Chain A, Trmh
 gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus]
 gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
          Length = 194

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 21/173 (12%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +L++      N+  + R      + +   VNP  G P+    S  ++    +   RV  +
Sbjct: 25  VLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETSGGSHKWVYL---RVHPD 81

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L EA   L      +YAT  R            E A    E +   +   ++FG E+WG+
Sbjct: 82  LHEAFRFLKERGFTVYATALR------------EDARDFRE-VDYTKPTAVLFGAEKWGV 128

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           + E +AL++  I  P+  +  SLN+S A  ++++E     + +   +    + 
Sbjct: 129 SEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLYDRPRLDP 181


>gi|292493437|ref|YP_003528876.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus
           halophilus Nc4]
 gi|291582032|gb|ADE16489.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus
           halophilus Nc4]
          Length = 171

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 16/178 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N     L L+ P      ++    +         V+V  +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTG-AHLHLIQPLGFDLDDRRLRRAGLDYHEWARVKVHPS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+      HF    + R +       + +            G    ++FG E  GL  + 
Sbjct: 63  LE------HF----SRRVQPRQVWACSSRGQQPYDKAHFHPGD--ALLFGPETRGLPRKL 110

Query: 137 IALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           +   +   ++  P+ P   SLN+S AV ++++E          ++  E   P   G+L
Sbjct: 111 LNTLSPKQVLRIPMLPASRSLNLSNAVAVVLYEAWRQHNFPGSRDAGE-VAPEPHGDL 167


>gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 261

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 36/179 (20%)

Query: 7   QLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L N +  PV  ++LV+     N+G + R       + + LV          A  +S  A
Sbjct: 106 PLPNLSPAPVGWVVLVEVADPGNLGTILRTADGAGFSGVILVGATTDPFDPAAVRASMGA 165

Query: 65  D-----------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
                        ++   R        IA    +  ++ R  +++++   P+        
Sbjct: 166 LFSQQIARTSWPDLLTWARQHR-----IA----LVGSSDRGASDYRATTYPR-------- 208

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + ++ G ER GLT+E++A  + ++  P+     SLN++ A  ++++E   + 
Sbjct: 209 ------PLLLVLGSERHGLTDEQLAACDLVVRIPMRGRSDSLNLAVAAGILMYEATRSQ 261


>gi|269798386|ref|YP_003312286.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           DSM 2008]
 gi|282850623|ref|ZP_06260002.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           ATCC 17745]
 gi|294794116|ref|ZP_06759253.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           3_1_44]
 gi|269095015|gb|ACZ25006.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           DSM 2008]
 gi|282580116|gb|EFB85520.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           ATCC 17745]
 gi|294455686|gb|EFG24058.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           3_1_44]
          Length = 161

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P++  N G +AR           L L+ P      +K    +      +  V+V 
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N++E      D  + YATT     +        E    + +         ++FG E  G
Sbjct: 60  ENIQELYEKYPDRRYFYATTKAKHTHS-------EVKYEIGDM--------LVFGPETRG 104

Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +    +  I  P+     SLN+S AV ++ +E M  
Sbjct: 105 LPESLLDGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQ 145


>gi|320093674|ref|ZP_08025549.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979373|gb|EFW10860.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 153

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I+  +P++  N G   R       + L LV P  G+  + A+   A  D   +  VRV  
Sbjct: 4   IVFWEPEIPGNTGAAIRLSACTG-SVLHLVRPL-GFDMDDAKLRRAGLDYHDLAHVRVHD 61

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +L  A+A +   ++A T R              A      +  G   G++ GRE  GL+ 
Sbjct: 62  SLDGALAGIPGRVWALTGR--------------AERAYTDVAYGDGDGLLLGRESVGLSE 107

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E ++       +   + P   SLN++ +  ++++E    
Sbjct: 108 EAMSHPGVAGRVRITMVPGVRSLNLANSAAIVLYEAWRQ 146


>gi|242241248|ref|YP_002989429.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
 gi|242133305|gb|ACS87607.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
          Length = 157

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R   N   T L L+ P      EK    +       D  +V   
Sbjct: 7   IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLAKVKRH 63

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +S+   A+A       TT  +R   +    P +                ++FG E  G
Sbjct: 64  PDYSSFLGAVAGCRIFACTTKGSRPYDEPAYQPGDV---------------LLFGSETAG 108

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +     +    I  P+ P   SLN+S +V ++ +E    
Sbjct: 109 LPEDIRNGFDPAFRIRIPMEPDCRSLNLSNSVAIISYEAWRQ 150


>gi|17230844|ref|NP_487392.1| hypothetical protein alr3352 [Nostoc sp. PCC 7120]
 gi|17132447|dbj|BAB75051.1| alr3352 [Nostoc sp. PCC 7120]
          Length = 153

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 26/165 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P ++LV+PQ+  N G +AR       T+L LV P     S++    +         V++ 
Sbjct: 2   PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLH 58

Query: 74  -FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
               L EA  + H      +   +     +   +  P +A   L            +FG 
Sbjct: 59  YHKTL-EAFENAHQERGGRLLGFSV--GGSSSYIQFPYQADDWL------------LFGS 103

Query: 128 ERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
           E  GL    ++  +A +  P+  P   SLN+S +V + ++E    
Sbjct: 104 ETTGLPPTVLSACDATLYIPMAEPGVRSLNLSVSVAVGLFEVRRQ 148


>gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
           15470]
 gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
           15470]
          Length = 170

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR     +LT L LV P      +K    +      +  V V  N
Sbjct: 3   IVLVEPEIPGNTGNIARLCAAEHLT-LHLVEPLGFQIDDKHLKRAGLDYWDLLDVHVHPN 61

Query: 77  LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                  +A  HF   TT   R+                  I    +  ++FG+E  GL 
Sbjct: 62  YDSVVRMLAGHHFYLNTTKAIRSYT---------------DISYDGDDVLVFGKETKGLP 106

Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            EE+  S+    I  P+     SLN+S AV ++  E M  
Sbjct: 107 -EELLRSHKEDCIRIPMIEEARSLNLSNAVAIVAMEAMRQ 145


>gi|75909401|ref|YP_323697.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75703126|gb|ABA22802.1| RNA methyltransferase TrmH, group 2 [Anabaena variabilis ATCC
           29413]
          Length = 153

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 24/164 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P ++LV+PQ+  N G +AR       T+L LV P     S++    +         V++ 
Sbjct: 2   PQVVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLH 58

Query: 74  FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +    EA  ++H      +   +    +++  +  P +A   L            +FG E
Sbjct: 59  YHKTIEAFENVHQERGGRLLGFSVSGSSSY--IQFPYQADDWL------------LFGSE 104

Query: 129 RWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
             GL    ++  +A +  P+  P   SLN+S +V + ++E    
Sbjct: 105 TTGLPPTVLSACDATLYIPMAEPGVRSLNLSVSVAVGLFEVRRQ 148


>gi|293602335|ref|ZP_06684781.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292819097|gb|EFF78132.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 156

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 13/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P++  N G   R   N    QL LV P      +     +         VRV   
Sbjct: 4   VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+ D       T  +  +  ++      A      I        +FGRE  GL++E 
Sbjct: 63  LQEALDD-------TGADAGSIYALTT---HAQRSVADIAFKPGDVFVFGRETAGLSDEH 112

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            A+      +  P+     SLN+S AV + V+E     
Sbjct: 113 QAMFPPQQRLRLPMRAGQRSLNLSNAVAVTVFEAWRQQ 150


>gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
 gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
          Length = 194

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 13/180 (7%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +L++      N+  + R      + Q   VNP  G P+    S  ++    ++   V   
Sbjct: 25  VLMENVHKPHNLSAILRTCDAVGILQAHAVNPTGGVPTFNETSGGSHKWVYLE---VHPT 81

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            + A   L        R R       A KE A    E +   +   I+ G E+WG++ E 
Sbjct: 82  TEAAFRHL--------RERGFSVYATALKEGARDYRE-VDYTRPTAIVLGAEKWGVSEEA 132

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++ +I  P+  +  SLN+S A  ++++E     + +   +    +    +  L  +L
Sbjct: 133 LALADGLIHIPMLGMVQSLNVSVAAAVILFEAQRQRLQAGLYDRPRLDPELYQKILEDWL 192


>gi|303231925|ref|ZP_07318633.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513354|gb|EFL55388.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 161

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 34/176 (19%)

Query: 17  IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P++  N G +AR           L L+ P      +K    +      +  V+V 
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N++E  A   D  + YATT       K V +  +    + +         ++FG E  G
Sbjct: 60  ENIEELYAKYPDRRYFYATT-----KAKHVHS--DVKFEIGDM--------LVFGPETRG 104

Query: 132 LT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           L       NEE       I  P+     SLN+S +V ++ +E M        K V 
Sbjct: 105 LPESLLEGNEE-----TCIRIPMVEEARSLNLSNSVAIIAYEAMRQLDYPDLKEVG 155


>gi|303230258|ref|ZP_07317025.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515041|gb|EFL57016.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 161

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 34/176 (19%)

Query: 17  IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P++  N G +AR           L L+ P      +K    +      +  V+V 
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N++E  A   D  + YATT       K V +  +    + +         ++FG E  G
Sbjct: 60  ENIEELYAKYPDRRYFYATT-----KAKHVHS--DVKFEIGDM--------LVFGPETRG 104

Query: 132 LT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           L       NEE       I  P+     SLN+S +V ++ +E M        K V 
Sbjct: 105 LPESLLEGNEE-----TCIRIPMVEEARSLNLSNSVAIIAYEAMRQLDYPDLKEVG 155


>gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
 gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
          Length = 191

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 21/198 (10%)

Query: 4   YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              ++    +  + +L++      N+  + R      + +   VNP  G P+    S  +
Sbjct: 8   RIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGILEAHAVNPTGGVPTFNETSGGS 67

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +    +   RV  +++EAI+ L      +YAT  R            E A    E +   
Sbjct: 68  HKWVYL---RVHPSIQEAISFLKEKGFRVYATALR------------EDARDFRE-VDYT 111

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           Q   I+ G E+WG++ E +ALS+  I  P+  +  SLN+S A  ++++E     + +   
Sbjct: 112 QPTAILLGAEKWGVSEETLALSHGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLKAGLY 171

Query: 179 NVKEQNTPATKGELLSFL 196
                +    +  L  +L
Sbjct: 172 EHPRLDPELYQRVLEDWL 189


>gi|238018785|ref|ZP_04599211.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
 gi|237864551|gb|EEP65841.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
          Length = 161

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 24/176 (13%)

Query: 17  IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P++  N G +AR           L L+ P      +K    +      +  V+V 
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N++E  A   D  + YATT     +        E    + +         ++FG E  G
Sbjct: 60  ENIQELYAKYPDRRYFYATTKAKHTHS-------EVKYEIGDM--------LVFGPESRG 104

Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           L    +       I  P+     SLN+S AV ++ +E M        K       P
Sbjct: 105 LPESLLEGVEETCIRIPMVDEARSLNLSNAVAIIAYEAMRQLDYPDLKAEGNWIQP 160


>gi|229009971|ref|ZP_04167188.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
           2048]
 gi|229022085|ref|ZP_04178639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1272]
 gi|229028341|ref|ZP_04184470.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1271]
 gi|229056322|ref|ZP_04195740.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|229095197|ref|ZP_04226189.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-29]
 gi|229101299|ref|ZP_04232047.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-28]
 gi|229114145|ref|ZP_04243566.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-3]
 gi|229159633|ref|ZP_04287645.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           R309803]
 gi|229165485|ref|ZP_04293267.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|229171329|ref|ZP_04298916.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228612148|gb|EEK69383.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228617990|gb|EEK75033.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228623837|gb|EEK80651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           R309803]
 gi|228669165|gb|EEL24586.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-3]
 gi|228682123|gb|EEL36252.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-28]
 gi|228688056|gb|EEL41942.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-29]
 gi|228720990|gb|EEL72532.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|228732971|gb|EEL83824.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1271]
 gi|228739237|gb|EEL89679.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1272]
 gi|228751309|gb|EEM01118.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
           2048]
          Length = 162

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR       T+L L+ P      +K    +         V+V
Sbjct: 2   GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKV 58

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
             + +++E             +N++     L    E A    +     ++   +FGRE  
Sbjct: 59  TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETN 108

Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    I    +  +  P+     SLN+S    ++++E     
Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151


>gi|154484057|ref|ZP_02026505.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
           27560]
 gi|149735099|gb|EDM50985.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
           27560]
          Length = 164

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           +IL++P++ +N G + R       T+L L+ P     +EK    +       D   V ++
Sbjct: 3   VILLEPEIPQNTGNIGRTCCATG-TKLHLIEPMGFRINEKNLKRA--GMDYWDDLDVTIY 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + K+ +     +    ATT            P +                I+FG+E  G
Sbjct: 60  DSFKDFMDQHPGIKIWMATTKAPHRYTDVEFGPDDY---------------IMFGKESAG 104

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +    +  I  P+NP   SLN++ +V ++++E +  
Sbjct: 105 IPEEILVDNEDTCIRIPMNPEIRSLNLANSVAIVLYEALRQ 145


>gi|30018734|ref|NP_830365.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
           14579]
 gi|30260705|ref|NP_843082.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|42779682|ref|NP_976929.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|47525820|ref|YP_017169.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47567107|ref|ZP_00237823.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
 gi|49183542|ref|YP_026794.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|49476831|ref|YP_034807.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52144766|ref|YP_082062.1| RNA methyltransferase [Bacillus cereus E33L]
 gi|65317966|ref|ZP_00390925.1| COG0219: Predicted rRNA methylase (SpoU class) [Bacillus anthracis
           str. A2012]
 gi|75761277|ref|ZP_00741258.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118476236|ref|YP_893387.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|165871765|ref|ZP_02216409.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0488]
 gi|167635710|ref|ZP_02394021.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0442]
 gi|167640663|ref|ZP_02398924.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0193]
 gi|170708207|ref|ZP_02898653.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0389]
 gi|177653797|ref|ZP_02935898.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0174]
 gi|190568180|ref|ZP_03021089.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034754|ref|ZP_03102162.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
 gi|196041372|ref|ZP_03108666.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           NVH0597-99]
 gi|196046793|ref|ZP_03114015.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB108]
 gi|206967640|ref|ZP_03228596.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           AH1134]
 gi|206974260|ref|ZP_03235177.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           H3081.97]
 gi|217958083|ref|YP_002336627.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
 gi|218234183|ref|YP_002365344.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
 gi|218895602|ref|YP_002444013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
 gi|218901687|ref|YP_002449521.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
 gi|222094299|ref|YP_002528358.1| RNA methyltransferase, trmh family, group 2 [Bacillus cereus Q1]
 gi|225862525|ref|YP_002747903.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB102]
 gi|227816581|ref|YP_002816590.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CDC 684]
 gi|228899231|ref|ZP_04063496.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|228906291|ref|ZP_04070176.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228913232|ref|ZP_04076870.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228919409|ref|ZP_04082776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228925735|ref|ZP_04088820.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931974|ref|ZP_04094867.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228937783|ref|ZP_04100414.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228944300|ref|ZP_04106674.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228951037|ref|ZP_04113157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228956964|ref|ZP_04118743.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228963633|ref|ZP_04124781.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228970664|ref|ZP_04131308.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977242|ref|ZP_04137639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228983751|ref|ZP_04143948.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229042401|ref|ZP_04190149.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|229068232|ref|ZP_04201537.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           F65185]
 gi|229077845|ref|ZP_04210466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock4-2]
 gi|229089609|ref|ZP_04220872.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-42]
 gi|229108153|ref|ZP_04237776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-15]
 gi|229120143|ref|ZP_04249394.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           95/8201]
 gi|229125980|ref|ZP_04255004.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|229137350|ref|ZP_04265963.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|229143271|ref|ZP_04271702.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|229148885|ref|ZP_04277131.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|229154256|ref|ZP_04282376.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           4342]
 gi|229177075|ref|ZP_04304466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           172560W]
 gi|229182880|ref|ZP_04310114.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
           6E1]
 gi|229188751|ref|ZP_04315788.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           10876]
 gi|229194862|ref|ZP_04321646.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|229601272|ref|YP_002865150.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0248]
 gi|254722176|ref|ZP_05183965.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A1055]
 gi|254738839|ref|ZP_05196542.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Western North America USA6153]
 gi|254743776|ref|ZP_05201460.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Kruger B]
 gi|254755063|ref|ZP_05207097.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Vollum]
 gi|254762203|ref|ZP_05214047.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Australia 94]
 gi|296501306|ref|YP_003663006.1| TrmH family RNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|301052197|ref|YP_003790408.1| TrmA family RNA methyltransferase [Bacillus anthracis CI]
 gi|29894275|gb|AAP07566.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|30254073|gb|AAP24568.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Ames]
 gi|42735599|gb|AAS39537.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
           10987]
 gi|47500968|gb|AAT29644.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47556163|gb|EAL14498.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
 gi|49177469|gb|AAT52845.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Sterne]
 gi|49328387|gb|AAT59033.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51978235|gb|AAU19785.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus E33L]
 gi|74491236|gb|EAO54471.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118415461|gb|ABK83880.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           str. Al Hakam]
 gi|164712490|gb|EDR18023.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0488]
 gi|167511378|gb|EDR86763.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0193]
 gi|167528969|gb|EDR91725.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0442]
 gi|170126863|gb|EDS95744.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0389]
 gi|172081189|gb|EDT66265.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0174]
 gi|190560672|gb|EDV14648.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992797|gb|EDX56757.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
 gi|196022328|gb|EDX61013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB108]
 gi|196027857|gb|EDX66470.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           NVH0597-99]
 gi|206736560|gb|EDZ53707.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           AH1134]
 gi|206747500|gb|EDZ58890.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           H3081.97]
 gi|217067511|gb|ACJ81761.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
 gi|218162140|gb|ACK62132.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
 gi|218535766|gb|ACK88164.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
 gi|218542951|gb|ACK95345.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
 gi|221238356|gb|ACM11066.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus Q1]
 gi|225786624|gb|ACO26841.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB102]
 gi|227006301|gb|ACP16044.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CDC 684]
 gi|228588618|gb|EEK46652.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228594728|gb|EEK52510.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           10876]
 gi|228600594|gb|EEK58180.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
           6E1]
 gi|228606397|gb|EEK63827.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           172560W]
 gi|228629080|gb|EEK85787.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           4342]
 gi|228634584|gb|EEK91167.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|228640078|gb|EEK96477.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|228646110|gb|EEL02331.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|228657463|gb|EEL13277.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|228663184|gb|EEL18773.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           95/8201]
 gi|228675283|gb|EEL30504.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-15]
 gi|228693727|gb|EEL47427.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-42]
 gi|228705466|gb|EEL57831.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock4-2]
 gi|228714891|gb|EEL66761.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           F65185]
 gi|228726948|gb|EEL78157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|228775946|gb|EEM24315.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228782461|gb|EEM30642.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228789057|gb|EEM36992.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228796053|gb|EEM43513.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228802719|gb|EEM49557.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228808644|gb|EEM55143.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228815380|gb|EEM61627.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228821889|gb|EEM67886.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228827692|gb|EEM73433.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228833928|gb|EEM79480.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228840240|gb|EEM85514.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228846415|gb|EEM91429.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228853314|gb|EEM98086.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228860410|gb|EEN04805.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|229265680|gb|ACQ47317.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0248]
 gi|296322358|gb|ADH05286.1| RNA methyltransferase, TrmH family,group 2 [Bacillus thuringiensis
           BMB171]
 gi|300374366|gb|ADK03270.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus biovar
           anthracis str. CI]
 gi|324324583|gb|ADY19843.1| TrmA family RNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326938265|gb|AEA14161.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 162

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR       T+L L+ P      +K    +         V++
Sbjct: 2   GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKI 58

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
             + +++E             +N++     L    E A    +     ++   +FGRE  
Sbjct: 59  TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETN 108

Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    I    +  +  P+     SLN+S    ++++E     
Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151


>gi|311109231|ref|YP_003982084.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
 gi|310763920|gb|ADP19369.1| SpoU rRNA methylase family protein 2 [Achromobacter xylosoxidans
           A8]
          Length = 156

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 58/158 (36%), Gaps = 13/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P++  N G   R   N    QL LV P      +     +         VRV   
Sbjct: 4   VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+EA+AD                S+ A    A      I        +FGRE  GL+ E 
Sbjct: 63  LQEALAD----------TGAAPSSIYALTTHAQRSVADIGFKPGDVFVFGRETAGLSEEH 112

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            A+      +  P+     SLN+S AV + V+E     
Sbjct: 113 QAMFPPQQRLRLPMRAGQRSLNLSNAVAVTVFEAWRQQ 150


>gi|170688538|ref|ZP_02879745.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0465]
 gi|254684375|ref|ZP_05148235.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CNEVA-9066]
 gi|170667563|gb|EDT18319.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0465]
          Length = 162

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR      + +L L+ P      +K    +         V++
Sbjct: 2   GVHVVLYQPEIPANTGNIARTCAATGI-ELHLIRPLGFSTDDKMLKRA--GLDYWQHVKI 58

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
             + +++E             +N++     L    E A    +     ++   +FGRE  
Sbjct: 59  TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFDYSKREKDYYFVFGRETN 108

Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    I    +  +  P+     SLN+S    ++++E     
Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151


>gi|225420403|ref|ZP_03762706.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme
           DSM 15981]
 gi|225040954|gb|EEG51200.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme
           DSM 15981]
          Length = 169

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L++P++  N G + R       T+L L+ P     SEKA   +       D   V+V+
Sbjct: 4   VVLLEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAIKRA--GLDYWDKLDVQVY 60

Query: 75  SNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ ++ +     A  +  +ATT  ++   +    P                  ++FG+E 
Sbjct: 61  ADYQDFLDRNPQAKGNLYFATTKAHQLYTEPAYRPDCY---------------LMFGKES 105

Query: 130 WGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  EEI ++N    +  P+     SLN+S +V ++++E +  
Sbjct: 106 AGIP-EEILVANEPYCVRIPMWGEIRSLNLSNSVSIVLYEALRQ 148


>gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 214

 Score = 87.0 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 15/161 (9%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVID--SV 71
           P+++L       N+G +AR M  F L +L + + P    PSE +   S      ++    
Sbjct: 65  PLLVLDGVGNPHNLGAIARTMAFFGLERLLISDHPGQASPSEASLRVSEGGLEWVEVIRA 124

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + F    + + D H I  T   +      VL               G+ + +I G E  G
Sbjct: 125 QKFVAALKRLRDSHRIVGTALGSGKPVAEVLN------------RPGKPIALILGNEEDG 172

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L    +A  + I++ P +    SLN++    +++ E  +  
Sbjct: 173 LPTATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAKQR 213


>gi|119510692|ref|ZP_01629820.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
 gi|119464646|gb|EAW45555.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
          Length = 153

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 20/162 (12%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P ++LV PQ+  N G +AR       T+L LV P     S++    +         V++ 
Sbjct: 2   PQVVLVYPQIPPNTGNIARTCAATG-TELHLVAPLGFEISDRYLKRA--GLDYWPYVKLH 58

Query: 74  -FSNLKEAIADLHFIYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              +L EA        AT      R    +V      A    +         ++FG E  
Sbjct: 59  YHESL-EAFQ------ATHQERGGRCLGFTVRGNFNYASFQFQADDW-----LLFGSETT 106

Query: 131 GLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
           GL +  ++  +A +  P+  P   SLN+S +V + ++E    
Sbjct: 107 GLPSTILSDCDATLYIPMAEPHVRSLNLSVSVAVSLFEARRQ 148


>gi|167463581|ref|ZP_02328670.1| predicted rRNA methylase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383783|ref|ZP_08057534.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151995|gb|EFX44938.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 154

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV+P++  N G ++R       T L LV P      +K    +        SV++   
Sbjct: 5   IVLVEPEIPANTGNISRTCAATG-TYLHLVRPLGFKTDDKTLKRA--GLDYWPSVKLEYH 61

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E     A   F  ATT  +R     V    +                 +FG+E  G
Sbjct: 62  DSFEEVEQKYAGHRFFLATTKASRTYTDFVFRDGDF---------------FVFGKETKG 106

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+   +    +  +  P++    SLN+S +  ++++E +  
Sbjct: 107 LSPNILGQYPDTKMRLPMSNAVRSLNLSNSAAIVLYEGLRQ 147


>gi|257791075|ref|YP_003181681.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|257474972|gb|ACV55292.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
          Length = 156

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 14/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++ +N G +AR        +L LV P     ++K  + +       D V +   
Sbjct: 7   IVLVEPEIPQNTGNIARTCACTG-ARLHLVEPMGFRLTQKNLARAGC--DYWDEVDIV-- 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                    +  A      +    +      A      +  G+   ++FGRE  GL    
Sbjct: 62  --------RWPCAEAFFEAHAADELHLFTGQACRGFGDVAYGEGSFLVFGRESRGLPLGL 113

Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I A +N  +  P+     SLN+S AV +  +E +   
Sbjct: 114 IEAHANRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150


>gi|224826042|ref|ZP_03699145.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum
           2002]
 gi|224601679|gb|EEG07859.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum
           2002]
          Length = 154

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 64/163 (39%), Gaps = 25/163 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            ++L  P++  N G V R   N    +L LV P  G+P + A+   A      +  R  V
Sbjct: 3   TVVLFQPEIPPNTGNVIRLCANTGC-ELHLVKPL-GFPLDDAKLRRAG-LDYHEYARLVV 59

Query: 74  FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             N +    A++      ATT   +   +          VL            +FG E  
Sbjct: 60  HENWEACRTALSGRRIFAATT---KGATRHDQTAFRPGDVL------------LFGPESR 104

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL  E +    ++  +  P+ P   S+N+S AV +MV+E    
Sbjct: 105 GLPQEVLDSFPADRRVRLPMQPESRSMNLSNAVAVMVFEAWRQ 147


>gi|257455437|ref|ZP_05620672.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
 gi|257447399|gb|EEV22407.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
          Length = 174

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 22/169 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++  N G + R   N   T L LV P      +K    +        +V+V +N
Sbjct: 4   VVLVEPKMPSNTGNIIRLCANTGAT-LHLVEPLGFALEDKKLRRAGLDYHEWANVKVHAN 62

Query: 77  LKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++A      + +  I A T       K +           E      N+ ++FG E  G
Sbjct: 63  WQDAQDSLSQSGVQRIVALTT---KLSKPLYD---------EDFAQLANIALVFGSETAG 110

Query: 132 LTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  E I  +   +  +  P+ P   SLN+S +V + ++E         +
Sbjct: 111 LP-EPIRAAIGQDNWLRLPMLPTSRSLNLSNSVAITLFEVWRQQGFGGD 158


>gi|323704896|ref|ZP_08116473.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535822|gb|EGB25596.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 156

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 30/168 (17%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              ++LV+P++ +N G +AR       ++L LV P     SEK    S           +
Sbjct: 2   PINVVLVEPEIPQNTGNIARTCVLTG-SKLHLVKPLGFSLSEKYLKRS--GLDYWPYLDL 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +V+ NL+E +       +  ATT + ++ +  V    E                I+FG+E
Sbjct: 59  KVYENLEEFLESTKGCKYYLATT-KGKHFYHEVKYEDE--------------SYILFGKE 103

Query: 129 RWGLT---NEEIALSNAIISFPVNP--LFPSLNISQAVLLMVWECMEN 171
             GL     E+    +  I  P+N      SLN+S +V ++V+E ++ 
Sbjct: 104 SAGLPQWLREKYE--DDCIRIPMNEVKAERSLNLSNSVAIVVYEALKQ 149


>gi|302842287|ref|XP_002952687.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f.
           nagariensis]
 gi|300262031|gb|EFJ46240.1| hypothetical protein VOLCADRAFT_118107 [Volvox carteri f.
           nagariensis]
          Length = 473

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-----GWPSEKARSSSANADCVID 69
             ++LV P+   NIG VARA  NF    L LV PR      G  + +AR  +   D V+D
Sbjct: 58  IRVVLVAPKHEANIGAVARACANFECLSLFLVAPRCAVGSGGVGAGEARKVACG-DAVLD 116

Query: 70  SVRVFSNLKEAIADLHFIYATTARNR 95
            + V   L EA+AD       T R  
Sbjct: 117 RLVVTDTLAEALADTAGSIGFTRRAG 142



 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSN---AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               ++FGRE  GL+  E+ L        + P   L PS+N+S AV +++ E     
Sbjct: 278 HATALVFGREESGLSEAELRLCRCPGHACAIPTGRLQPSMNLSHAVAVVLGEIFSRR 334


>gi|317488202|ref|ZP_07946773.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316912707|gb|EFV34245.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 156

 Score = 86.7 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 14/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++ +N G +AR        +L LV P     ++K  + +       D V +   
Sbjct: 7   IVLVEPEIPQNTGNIARTCACTG-ARLHLVEPMGFRLTQKNLARAGC--DYWDEVDIV-- 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                    +  A      +    +      A      +  G+   ++FGRE  GL    
Sbjct: 62  --------RWPCAEAFFEAHAADELHLFTGQACRGFGDVAYGEGSFLVFGRESRGLPLGL 113

Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I A +N  +  P+     SLN+S AV +  +E +   
Sbjct: 114 IEAYANRCVRIPMREGLRSLNLSNAVAVAAYEALRQQ 150


>gi|307546981|ref|YP_003899460.1| tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581]
 gi|307219005|emb|CBV44275.1| putative tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM
           2581]
          Length = 162

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 27/178 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           ++L  P++  N G + R   N    +L L+ P      +K    +       +  RV   
Sbjct: 4   VVLFQPEIPPNTGNLIRLCANTGF-RLHLIEPLGFELDDKRLRRA--GLDYHEWARVRVH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +    EA++    ++A + R R  +                   G    ++FG E  G
Sbjct: 61  RDWDAFIEAVSP-RRVFAVSTRGRTGYHEP--------------AYGPGDALVFGPETRG 105

Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           L     + +  +  +   P+ P   SLN+S A  ++V+E                + P
Sbjct: 106 LPQAMLDALPEAQRL-RIPMLPESRSLNLSNACAILVYEAWRQLDFEGALAPTTGSAP 162


>gi|218289430|ref|ZP_03493664.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240536|gb|EED07717.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 154

 Score = 86.7 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 18/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I+L +P++  N G VAR       T L LV  + G+ ++  +   A  D   +  +R   
Sbjct: 3   IVLFEPEIPANTGNVARTCAVTGCT-LHLVG-KLGFSTDDRQLKRAGLDYWHLLDIRYHD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L+E                  F  V             +  G N  ++FG+E  GL  +
Sbjct: 61  SLEELWELY---------PEGVFHYVET---EGGRWYTEVAYGPNDFLVFGKETKGLPKD 108

Query: 136 EI-ALSNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171
            I A ++ ++  P+  +    SLN+S AV ++V+E +  
Sbjct: 109 VIEAHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQ 147


>gi|298528451|ref|ZP_07015855.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512103|gb|EFI36005.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 153

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++  N G +AR       T L LV P      +K    +       + V +   
Sbjct: 3   IVLYQPRIPPNTGAIARLCAAT-RTPLHLVGPLGFSLDDKYLKRA--GLDYWEHVELTLW 59

Query: 74  --FSNLKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +   ++ +   H +  T+AR   +  +   + ++                +I G E W
Sbjct: 60  KNWEEYRQNLDKSHRLIMTSARQGADYTRHSYSFQDH---------------LILGPETW 104

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL  +  + ++ +I  P+     SLN+S A  ++++E      +    
Sbjct: 105 GLPEKITSQADHLIRIPIWGEVRSLNLSNAAGIILYEGYRQLGMPPAH 152


>gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium
           praevalens DSM 2228]
          Length = 161

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+LV+P++ +N G +AR     N + L LV P     S+K    +       D   V+ +
Sbjct: 3   IVLVEPEIPQNTGNIARTCAVTN-STLHLVRPLGFSTSDKYLKRA--GLDYWDKLDVKYY 59

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            NL +      D  F YATT                A      +    +   +FG+E  G
Sbjct: 60  DNLTDFFIKNKDGRFFYATT---------------KAPNSYSDLEYEADDYFLFGKETAG 104

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +    +  I  P+     SLN+S +V ++++E +  
Sbjct: 105 LPESLLESNLDKAIRIPMKDDLRSLNLSNSVSIIIYEALRQ 145


>gi|163938472|ref|YP_001643356.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|229131481|ref|ZP_04260374.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|163860669|gb|ABY41728.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           weihenstephanensis KBAB4]
 gi|228651981|gb|EEL07925.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST196]
          Length = 162

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR       T+L L+ P      +K    +         V+V
Sbjct: 2   GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKV 58

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
             + +++E             +N++     L    E A          ++   +FGRE  
Sbjct: 59  TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFNYSKREKDYYFVFGRETN 108

Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    I    +  +  P+     SLN+S    ++++E     
Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151


>gi|302038465|ref|YP_003798787.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira
           defluvii]
 gi|300606529|emb|CBK42862.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira
           defluvii]
          Length = 154

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G + R   N   + L LV P      +K    +        S+ V+ +
Sbjct: 4   VILYQPEIPPNTGNIIRLCANTGAS-LHLVKPLGFTLEDKQLLRAGLDYHEFASITVYES 62

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             E +A       F  +T  R R                 + +   +    +FG E  GL
Sbjct: 63  WDECVARFTGARLFAVSTKGRQRY----------------DLVRYTEGDAFVFGPESRGL 106

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +        +  P+ P   SLN+S +V ++++E    
Sbjct: 107 PAEILGSVSEQQCLRVPMVPGSRSLNLSNSVAVVLYEAWRQ 147


>gi|258510467|ref|YP_003183901.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477193|gb|ACV57512.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 154

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I+L +P++  N G VAR       + L LV  + G+ ++  +   A  D   +  +R   
Sbjct: 3   IVLFEPEIPANTGNVARTCAVTG-STLHLVG-KLGFSTDDRQLKRAGLDYWHLLDIRYHD 60

Query: 76  NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +L+E  A+                F  V             +  G N  ++FG+E  GL 
Sbjct: 61  SLEELWAL-----------YPEGVFHYVET---EGGRWYTEVAYGPNDFLVFGKETKGLP 106

Query: 134 NEEI-ALSNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171
            + I A ++ ++  P+  +    SLN+S AV ++V+E +  
Sbjct: 107 KDVIEAHADHVVRIPMIDHAAARSLNLSNAVAVVVFEALRQ 147


>gi|154495837|ref|ZP_02034533.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC
           29799]
 gi|150275035|gb|EDN02083.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC
           29799]
          Length = 163

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 16/167 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+P++ +N G +AR       ++L L+ P     S++A   +      +  + V+ NL
Sbjct: 5   VLVEPEIPQNTGNIARTCAAT-RSRLHLIKPLGFDISDRAVKRAGLDYWHMVDLTVYENL 63

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE-- 135
           ++  A            R   K +      A              + FG+E  GL  E  
Sbjct: 64  EDFFA------------RTGAKDLWLMTTKAPRSYAEAEFRDECWLFFGKETAGLPREFR 111

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           E    +  I  P+ P   SLN++ +V ++ +E +            E
Sbjct: 112 EAHR-DRCIRIPMRPDARSLNLANSVAIVTYEALRQLEFPGLSGEGE 157


>gi|228989669|ref|ZP_04149651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
           pseudomycoides DSM 12442]
 gi|228995858|ref|ZP_04155516.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock3-17]
 gi|229003475|ref|ZP_04161293.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228757713|gb|EEM06940.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228763830|gb|EEM12719.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock3-17]
 gi|228770003|gb|EEM18585.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
           pseudomycoides DSM 12442]
          Length = 162

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR       T+L L+ P      +K    +         V++
Sbjct: 2   GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKI 58

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
             + +++E             +N++     L    E A    +     ++   +FGRE  
Sbjct: 59  TYYDSIEEFYE----------KNKDGEFFYLTKYGEKAHTAFDYSKVEKDYYFVFGRETN 108

Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    I    +  +  P+     SLN+S    ++++E     
Sbjct: 109 GLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151


>gi|289449578|ref|YP_003475415.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184125|gb|ADC90550.1| RNA methyltransferase, TrmH family, group 2 [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 163

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 20/169 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G + R         L LV P      EK    +         +     
Sbjct: 4   IVLVEPEIPYNTGAIGRTCVALGAA-LHLVGPMGFSIDEKQVRRA--GLDYWQHLNY--T 58

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             E I D       TA++ +        K  A+     +       I FG+E  GL  E 
Sbjct: 59  FYENIVDF------TAKHPDIKPFYATTK--ALNTYAEVSYPSETWIFFGKESAGLPEEM 110

Query: 137 I----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           +          I  P+ P   SLN+S +V ++ +E        S +   
Sbjct: 111 LLPFPERC---IRIPMYPQIRSLNLSNSVAIIAYEVARQHGFPSLQATG 156


>gi|251798741|ref|YP_003013472.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           JDR-2]
 gi|247546367|gb|ACT03386.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           JDR-2]
          Length = 154

 Score = 86.3 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSVR 72
           I+LV+P++  N G +AR         L LV P      ++    +     +A  V +   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-AHLHLVRPLGFQTDDRTLKRAGLDYWHAVHV-EYHD 62

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F  L++A  +  F YA+T   +                 E  F   +   +FG+E  GL
Sbjct: 63  SFKELQDANPNGRFFYASTRATKVYT--------------EFDFRDGD-FFVFGKETKGL 107

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E I A  +  +  P+     SLN+S +  ++V+E +  
Sbjct: 108 PQELIDANLDTCMRMPMTGDVRSLNLSNSAAIIVYEALRQ 147


>gi|152974303|ref|YP_001373820.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023055|gb|ABS20825.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cytotoxicus
           NVH 391-98]
          Length = 162

 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 21/165 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR         L L+ P      +K    +       + V++
Sbjct: 2   GVNVVLYQPEIPANTGNIARTCAATGAG-LHLIRPLGFSTDDKMLKRA--GLDYWEHVKI 58

Query: 74  --FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             + +++E      D  F Y T               E A    +     +N   +FGRE
Sbjct: 59  TYYDSIEEFYEKNQDGEFFYLT------------KYGEKAHTAFDYSNPEKNYYFVFGRE 106

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GL    I    +  +  P+     SLN+S    ++V+E     
Sbjct: 107 TNGLPANIIQENFDHCLRIPMTDKVRSLNLSNTAAILVYEAFRQQ 151


>gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 248

 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 17/159 (10%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDS 70
           AK P++IL       N+G +AR M  F L +L + + P    PS+ A   +      +D 
Sbjct: 96  AKEPLVILDGIGNPHNLGAIARTMAFFGLGRLIVSDHPEQALPSDAAFRIAEGGLEWVD- 154

Query: 71  VRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           V   +NL +A+  L     +  T      + K   +             + + + ++ G 
Sbjct: 155 VYQVANLGKALPRLKPHYQVIGTALGAHRSMKDTFS------------SNDKPLALVLGN 202

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E  GL    +A  + I++ P +    SLN+S    +++ 
Sbjct: 203 EEEGLPATTLAACDDIVTIPGSGRVQSLNVSATAAILIH 241


>gi|169831211|ref|YP_001717193.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638055|gb|ACA59561.1| RNA methyltransferase, TrmH family, group 2 [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 153

 Score = 85.9 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++ +N G +AR       + L LV+P     S +    +      +  V    +
Sbjct: 4   VVLVEPEIPQNTGNIARTCAATG-SVLHLVHPLGFSVSNRYLKRAGLDYWHLVEVHHHPS 62

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             E      D  F +AT  R R        P                  ++FG+E  GL 
Sbjct: 63  FDEVCRRYPDRPFFFATARRGRRYT-DARYPD--------------GSFLVFGKETTGLP 107

Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            E +   +   +  P      SLN+S AV ++V+E +       
Sbjct: 108 AELLEANAEQCVRLPQREPARSLNLSNAVAVLVYEALRQQGFPG 151


>gi|294792254|ref|ZP_06757402.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           6_1_27]
 gi|294457484|gb|EFG25846.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           6_1_27]
          Length = 161

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P++  N G +AR           L L+ P      +K    +      +  V+V 
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHM---TLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVH 59

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N++E         + YATT     +        E    + +         ++FG E  G
Sbjct: 60  ENIQELYEKYPNRRYFYATTKAKHTHS-------EVKYEIGDM--------LVFGPETRG 104

Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +    +  I  P+     SLN+S AV ++ +E M  
Sbjct: 105 LPESLLDGKEDTCIRIPMVDEARSLNLSNAVAIIAYEGMRQ 145


>gi|239907493|ref|YP_002954234.1| RNA methyltransferase [Desulfovibrio magneticus RS-1]
 gi|239797359|dbj|BAH76348.1| RNA methyltransferase [Desulfovibrio magneticus RS-1]
          Length = 164

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---- 73
           +LV P++ +N G VAR       T L  + P     +++    +         V +    
Sbjct: 5   VLVAPEIPQNAGSVARLCAA-AKTPLHFIKPLGFSLADRYLKRA--GLDYWPHVNLTVWE 61

Query: 74  -FSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            F +   A A    + AT   R          P EA  +L            +FG E  G
Sbjct: 62  DFPSFAAARAGRRLVAATAGNRGHAAVPHHRFPFEADDIL------------LFGTESSG 109

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+ E +A ++ +++ P+     SLN++ A  ++++E +  
Sbjct: 110 LSEEVLAAAHRLVTIPIWGQVRSLNVANAASVVLYEALSR 149


>gi|157691625|ref|YP_001486087.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
 gi|194014805|ref|ZP_03053422.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
           7061]
 gi|157680383|gb|ABV61527.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
 gi|194013831|gb|EDW23396.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
           7061]
          Length = 157

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 15/162 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR     N T L L+ P      +K    +           V
Sbjct: 2   GLHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWKYANV 58

Query: 74  F--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L E            A  +  F  +    +      +     ++   +FGRE  G
Sbjct: 59  VYHDSLDELFE---------AHPKGQFFYITKFGQKPHTTFDYSQLDEDYFFVFGRETSG 109

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  + I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 110 LPKDLIERNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151


>gi|196231420|ref|ZP_03130279.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
 gi|196224756|gb|EDY19267.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
          Length = 151

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 13/156 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++  N G + R     + T L LV P     S+K    +         VRV  +
Sbjct: 4   VVLVEPEIPPNTGNIGRLCLATD-THLHLVKPLGFSLSDKELKRA--GLDYWKDVRV--S 58

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + E+ A+L       A++ +     L  K      +E+   G    ++FGRE  GL    
Sbjct: 59  VWESYAELQ-----AAQSADARYFYLTTKVQRPYWDEQFRDGD--FLVFGRETKGLPEPL 111

Query: 137 IALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +  ++ P+ P   SLN++ +V ++++E +  
Sbjct: 112 LESNRDRCLTIPMTPQTRSLNLATSVGIVLYEAVRQ 147


>gi|269120218|ref|YP_003308395.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
 gi|268614096|gb|ACZ08464.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
          Length = 153

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 26/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L++P++  N G +AR       T L L+ P      EK    +         V+  V+
Sbjct: 3   IVLLNPEIPYNTGNIARTCVLTG-TGLHLIKPLGFSLDEKQIRRA--GLDYWKDVKLTVW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L E +    +  F +ATT   +     V    +                I+FG E  G
Sbjct: 60  DSLTELMESNKNAKFYFATTKTRQKYTDPVYREDDY---------------IVFGPESRG 104

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  EEI L N    I+ P+ P   SLN+S +  ++++E +  
Sbjct: 105 VP-EEILLENKENCITIPMLPKGRSLNLSNSAAIILYEALRQ 145


>gi|317401243|gb|EFV81886.1| rRNA methylase [Achromobacter xylosoxidans C54]
          Length = 156

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P++  N G   R   N    QL LV P      +     +         VRV   
Sbjct: 4   VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVHDT 62

Query: 77  LKEAIADL----HFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+EA+ D       IYA TT   R+       P +                 +FGRE  G
Sbjct: 63  LQEALDDTGASASHIYALTTQAQRSVGDVRFEPGDV---------------FVFGRESAG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L+ E  AL      +  P+     SLN+S AV + V+E     
Sbjct: 108 LSAEHHALFAPQQRLRLPMRTGQRSLNLSNAVAVTVFEAWRQQ 150


>gi|326791033|ref|YP_004308854.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           lentocellum DSM 5427]
 gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           lentocellum DSM 5427]
          Length = 163

 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 20/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++ +N G +AR       T L L+ P      EK    +      + +V+ + +
Sbjct: 4   IVLHEPEIPQNTGNIARTCAATGAT-LHLIEPLGFSLDEKQIKRAGLDYWHLVNVQTYKD 62

Query: 77  LKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +E +   ++  +Y  T ++R  +  V   +E                I+FG+E  G+  
Sbjct: 63  YEEFLEKNNYPKVYMATTKSRQTYTDVSYEEEC--------------YIMFGKETAGIP- 107

Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           EEI L N    I  P+     SLN+S +V ++++E +            E
Sbjct: 108 EEILLDNKETCIRVPMISEARSLNLSNSVAIVIYEALRQHQFEHLTKQGE 157


>gi|255505416|ref|ZP_05345925.3| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255268327|gb|EET61532.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 167

 Score = 85.5 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 26/169 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +P++  N G + R        +L L+ P     SEKA   +           V  +
Sbjct: 7   IVLFEPEIPSNTGNIGRTCVATG-ARLHLIEPLGFSLSEKAIKRA--GMDYWKELDVTRY 63

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +          ATT   +   +    P                  ++FG+E  G
Sbjct: 64  LDFEEFLEKNPGAKIYMATTKAPQTYTEVHYEPDCY---------------LMFGKESAG 108

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +  EEI L++   ++  P+     SLN+S AV ++++E +  +  +  K
Sbjct: 109 IP-EEILLAHQETVVRIPMLGETRSLNLSNAVAIVLYEALRQNQFAQMK 156


>gi|33591801|ref|NP_879445.1| rRNA methylase [Bordetella pertussis Tohama I]
 gi|33571444|emb|CAE44927.1| rRNA methylase [Bordetella pertussis Tohama I]
 gi|332381218|gb|AEE66065.1| rRNA methylase [Bordetella pertussis CS]
          Length = 156

 Score = 85.5 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P++  N G   R   N    QL LV P      +     +         V+V   
Sbjct: 4   VVLVSPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDT 62

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +A+A        I+A T R R +             L +  F   +V  +FGRE  GL
Sbjct: 63  LPQALAATGAAAPRIFALTTRARTS-------------LADMAFQAGDV-FVFGRETAGL 108

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   +AL      +  P+ P   SLN+S AV + V+E    S
Sbjct: 109 SEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQS 150


>gi|146296318|ref|YP_001180089.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409894|gb|ABP66898.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 154

 Score = 85.5 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 24/164 (14%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              I+L +P++  N G +AR       ++L L+ P      +K    +           V
Sbjct: 2   PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +++ +L +      D +  Y +T   +   ++                   N  ++FG+E
Sbjct: 59  KIYKDLNDFFEKNRDANVFYFSTKGKQYYTQAPYT---------------DNCYLMFGKE 103

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    I    +     P+     SLN+S AV ++++E +  
Sbjct: 104 TAGLPQWLIEQNIHKTYRIPMISDVRSLNLSNAVAIVLYEALRQ 147


>gi|256823506|ref|YP_003147469.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256797045|gb|ACV27701.1| RNA methyltransferase, TrmH family, group 2 [Kangiella koreensis
           DSM 16069]
          Length = 153

 Score = 85.5 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++  N G + R   N    QL L+ P      +K    +       +  +V   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIKPLGFEIDDKKMRRA--GLDYHEWAQVKTH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N +E + +     ++  + + ++ F               +I       ++FG E  GL
Sbjct: 61  ENYQEFLNNEQPKRLFGLSTKAKHYFH--------------QIAYQDGDYLMFGPETRGL 106

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            N  +  +   ++  P+ P   SLN+S  V ++ +E +  
Sbjct: 107 PNHILNDIGEQLLRIPMRPDSRSLNLSNTVAIVTYEVLRQ 146


>gi|229083785|ref|ZP_04216100.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-44]
 gi|228699525|gb|EEL52195.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-44]
          Length = 162

 Score = 85.1 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 21/165 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR       T+L L+ P      +K    +         V++
Sbjct: 2   GVHVVLYQPEIPANTGNIARTCAATG-TELHLIRPLGFSTDDKMLKRA--GLDYWQHVKI 58

Query: 74  --FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             + +++E      D  F Y T               E A    +     +N   +FGRE
Sbjct: 59  TYYDSIEEFYEKNSDGEFFYLT------------KYGEKAHTQFDYSNVEKNYYFVFGRE 106

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GL    I    +  +  P+     SLN+S    ++++E     
Sbjct: 107 TNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 151


>gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
           curdlanolyticus YK9]
 gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
           curdlanolyticus YK9]
          Length = 155

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR       T L LV P      +     +        ++  + +
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFRTDDATLKRAGLDYWYAVNLTYYDS 63

Query: 77  LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             E         F YA+T  N+                ++  +   ++  +FG+E  GL 
Sbjct: 64  FSEVEERFKGHRFFYASTRANKRY--------------SDFEYKDGDL-FVFGKETKGLP 108

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E + A  N +I  P+     SLN++ +  ++V+E +  +
Sbjct: 109 QELLDANPNQLIRMPMTDKVRSLNLANSAAIVVYEALRQT 148


>gi|255066800|ref|ZP_05318655.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
 gi|255048875|gb|EET44339.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
          Length = 263

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 16/171 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           PQ      G  ++L   Q   N+G V R+     + Q+ L N      S K   +   A 
Sbjct: 107 PQGDLPLSGDCVVLDRLQDPGNVGTVLRSAAASGIRQIVLGNDCVDIWSPKVLRAGMGAH 166

Query: 66  CVID-SVRVF-SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            ++D   RVF  +  +A  D  +  A   RN ++                ++        
Sbjct: 167 FLLDIYSRVFLPHWLDAYQDKIWATALDGRNPSDLY--------------QLDLNAPCAW 212

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +FG E  G++ E +   +  +  P+     SLN++ A  + ++E M   I 
Sbjct: 213 VFGNEGSGVSREILEKVDGSVRIPMLGQTESLNVAMAATVCLFEQMRQRIA 263


>gi|268608521|ref|ZP_06142248.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1]
          Length = 165

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV+PQ+ +N G ++R        +L LV P     S+K    +       D + +  +
Sbjct: 6   IVLVEPQIPQNTGNISRTCAVTG-ARLHLVRPLGFEVSDKHLKRA--GLDYWDKLDITYY 62

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L +      D HF Y TT                 + ++  I    N  +IFGRE  G
Sbjct: 63  DDLSDFFDKNKDGHFYYFTT---------------KGLHVHSDIDYPDNSYLIFGREDKG 107

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E +   N       P+     SLN+S +V + V+E +   
Sbjct: 108 LP-ESLLHDNPGFCARIPMRNELRSLNLSNSVAIAVYEVLRQW 149


>gi|229543212|ref|ZP_04432272.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans
           36D1]
 gi|229327632|gb|EEN93307.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans
           36D1]
          Length = 158

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           ++L  P++  N G +AR       T L L+ P      +K    +         V +   
Sbjct: 6   VVLYQPEIPANTGNIARTCAGTG-TTLHLIRPLGFSTDDKMLKRA--GLDYWKHVNIVYY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E                     +    E      +     +N+  +FGRE  GL N
Sbjct: 63  DSLEEFFE---------KNADGEVYYIETFGEKPFTDFDFSDPDKNLYFMFGRETSGLPN 113

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 114 DLIEKNKDRCLRIPMTDKVRSLNLSNTAAILVYEALRQQ 152


>gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
           DSM 5476]
 gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
           DSM 5476]
          Length = 172

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 24/166 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV+PQ+ +N G +AR        +L LV P      +K    +           +  +
Sbjct: 6   IVLVEPQIPQNTGNIARTCAATG-ARLHLVKPLGFAIDDKKLKRA--GLDYWHYLDITYY 62

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             LK+  A     +F Y TT + + N+  V  P               N  I+FGRE  G
Sbjct: 63  DGLKDFFAQNSGGNFYYFTT-KGQANYSEVAYPD--------------NAYIVFGREDAG 107

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L  + +       +  P+     SLN+S  V +  +E +      +
Sbjct: 108 LPEDLLFHNPETCVRLPMRGGIRSLNLSNTVAVATYEVLRQWGFPA 153


>gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           anaerobius 653-L]
 gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           anaerobius 653-L]
          Length = 168

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 26/166 (15%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+LV+P++  N G + R   N    QL L+ P      +K            D   +
Sbjct: 14  PINIVLVEPEIPHNTGNIIRTCANTG-AQLHLIKPLGFSLDDKHLKR--CGLDYWDIADI 70

Query: 74  -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                F  L+E   + ++ YATT   ++                  +   +   ++FG+E
Sbjct: 71  KYYDSFEELQEKYPEANYFYATTKTQKSY---------------ADVEYNEGCFLVFGKE 115

Query: 129 RWGLTNEEIALSNAII-SFPVNPLFPS--LNISQAVLLMVWECMEN 171
             GL  + I  +       P+  +  +  LN+S +V ++V+E +  
Sbjct: 116 TKGLPKDLIEKNEGHCIRIPMRGIEGARCLNLSNSVAIVVYEALRQ 161


>gi|325068666|ref|ZP_08127339.1| SpoU family rRNA methyltransferase [Actinomyces oris K20]
          Length = 152

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +I  +P++  N G   R   N   + L LV+P   +  + A+   A  D   + + RV +
Sbjct: 4   VIFFEPRIPGNTGAAIRLSANTG-SMLHLVDP--LFDMDDAKLRRAGLDYHDLANTRVHA 60

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +E +  +   IYA T+                  L  ++    +  ++FG E  GL  
Sbjct: 61  TWQECLEQIPGRIYAFTS--------------HTERLYTQVDWRGDDALLFGPEPTGLPQ 106

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     +A +  P+     SLN++ +  + ++E   +
Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRS 145


>gi|262376672|ref|ZP_06069900.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308382|gb|EEY89517.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 158

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +        +++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEYANMQIWEN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +++ +ADL    A+     +    +                 + V ++ G E  GL  E 
Sbjct: 63  IEDCLADL----ASKGIGLDAIYPLTT---KGSETPHTSDLNRPVALLMGPETRGLP-EH 114

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + L       I  P+     SLN+S A  ++V+E     
Sbjct: 115 VRLMFPQKHWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 153


>gi|289577474|ref|YP_003476101.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|289527187|gb|ADD01539.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
          Length = 156

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 30/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++ +N G +AR       ++L LV P  G+  E+     A  D   +  + V+ 
Sbjct: 5   VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPL-GFSIEEKYVKRAGLDYWPLLDLTVYD 62

Query: 76  NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           NL++ +       F  ATT   R                   +    N  I+FG+E  GL
Sbjct: 63  NLEQFLEENKGKKFYLATTKAKRYYH---------------EVKYEDNSYILFGKETAGL 107

Query: 133 TNEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171
               I          I  P++ +    SLN+S +V ++++E +  
Sbjct: 108 PKWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149


>gi|295092497|emb|CBK78604.1| Predicted rRNA methylase (SpoU class) [Clostridium cf.
           saccharolyticum K10]
          Length = 180

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R       T+L L+ P     SEKA   +       D   V V+
Sbjct: 3   IVLYEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAVKRA--GLDYWDKLDVTVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+ ++ +            +RN    +      A  +        +  I+FG E  G+  
Sbjct: 60  SDYQDFL------------DRNPGAKIYMATTKAPNVYTEASYEPDCYIMFGPESRGIPE 107

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +       +  P+     SLN+S +V ++++E +  
Sbjct: 108 DILVQHQETCVRIPMWGDIRSLNLSNSVSIILYEALRQ 145


>gi|226951582|ref|ZP_03822046.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|294651241|ref|ZP_06728569.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837685|gb|EEH70068.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|292822894|gb|EFF81769.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 156

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++  +ADL       A+   +   +             +   + V ++ G E  GL  E+
Sbjct: 63  IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EQ 112

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + L    +  I  P+     SLN+S A  ++V+E     
Sbjct: 113 VRLMFPQDQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|283796619|ref|ZP_06345772.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291076043|gb|EFE13407.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 163

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R       T+L L+ P     SEKA   +       D   V V+
Sbjct: 3   IVLYEPEMPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKAVKRA--GLDYWDKLDVTVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+ ++ +            +RN    +      A  +        +  I+FG E  G+  
Sbjct: 60  SDYQDFL------------DRNPGAKIYMATTKAPNVYTEASYEPDCYIMFGPESRGIPE 107

Query: 135 EEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +  +    +  P+     SLN+S +V ++++E +  
Sbjct: 108 DILVKNQETCVRIPMWGDIRSLNLSNSVSIILYEALRQ 145


>gi|160932290|ref|ZP_02079681.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
 gi|156868892|gb|EDO62264.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
          Length = 168

 Score = 84.3 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I++V+P++ +N G VAR        +L LV P      +K    +      +  +  + N
Sbjct: 6   IVMVEPEIPQNTGNVARTCAATG-ARLHLVGPMGFTIDDKKLKRAGLDYWHLLDITYYEN 64

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+E        +F Y +T                A   +  +    N  ++FG+E  GL 
Sbjct: 65  LEEFFEKNKGGNFYYFST---------------KAPHRHTDLAYPDNCYLLFGKETAGLP 109

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +    +  +  P+     SLN+S +V + V+E +   
Sbjct: 110 EKLLFDNPDTTVRIPMIDEARSLNLSNSVAVGVYEVLRQW 149


>gi|326563511|gb|EGE13770.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
          Length = 79

 Score = 84.3 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 8  LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
          L++      I++V   L  NIG  ARA+    L  L +VNPR     + + +++A A  +
Sbjct: 6  LKSWLSRIRIVMVGTTLPANIGSAARALHTMGLDDLVVVNPR-LPIDDSSYANAAGAGIL 64

Query: 68 IDSVRVFSNLKEAI 81
          +D   +  ++K AI
Sbjct: 65 LDKACITKDIKHAI 78


>gi|317132499|ref|YP_004091813.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
 gi|315470478|gb|ADU27082.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
          Length = 169

 Score = 84.3 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L++P++ +N G VAR         L LV P      +     +      + ++  + N
Sbjct: 4   IALIEPEIPQNTGNVARTCAATG-AHLHLVKPLGFAIDDAKLKRAGLDYWHLLNITYYEN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L + +             R            A      +    +  ++FG+E  GL  EE
Sbjct: 63  LADFL-------------RRAPGPCFFFSSKAPRSYTDVHYPPDACLVFGKETAGLP-EE 108

Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           + L++    +  P+      LN+S AV +  +E +     S  +   E
Sbjct: 109 LLLAHEDSAVRLPIRAEARCLNLSNAVAVGAYEALRQWDFSGLRADGE 156


>gi|167038402|ref|YP_001665980.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038864|ref|YP_001661849.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
 gi|256751142|ref|ZP_05492024.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300913551|ref|ZP_07130868.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307723434|ref|YP_003903185.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
 gi|320116806|ref|YP_004186965.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853104|gb|ABY91513.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
 gi|166857236|gb|ABY95644.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750048|gb|EEU63070.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300890236|gb|EFK85381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307580495|gb|ADN53894.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
 gi|319929897|gb|ADV80582.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 156

 Score = 84.3 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++ +N G +AR       ++L LV P      EK    +      +  + V+ N
Sbjct: 5   VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDN 63

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L++ +       F  ATT + R  +  V                  N  I+FG+E  GL 
Sbjct: 64  LEQFLEQNKGKKFYLATT-KARKYYHDVKYED--------------NSYILFGKETAGLP 108

Query: 134 NEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171
              I          I  P++ +    SLN+S +V ++++E +  
Sbjct: 109 KWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149


>gi|283954465|ref|ZP_06371985.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794082|gb|EFC32831.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 155

 Score = 84.3 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L +V P     S+KA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPSVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT     + K     +             +N  + FG E 
Sbjct: 61  ENLEEFLNENIIHKNRFFFATT----KSQKPYFDVEFQ-----------KNDFLFFGSES 105

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL+ E + L+    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLSMELMQLNWQNAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|295101681|emb|CBK99226.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
           L2-6]
          Length = 168

 Score = 84.3 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74
           I+LV+P++ +N G VAR        +L LV P  G+  +  +   A  D    +D +  +
Sbjct: 9   IVLVEPRIPQNTGNVARTCACTAC-RLHLVGPM-GFAIDDKKLKHAGLDYWHYLD-ISYY 65

Query: 75  SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L +  +  D  F Y TT   R     V  P                  ++FGRE  GL
Sbjct: 66  DSLDDFFSKNDGPFYYFTTKAPRRYT-DVAYPD--------------GAYLVFGREDAGL 110

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             E +  ++    I  P+     SLN+S +V + V+E +   
Sbjct: 111 P-EALLAADQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151


>gi|94501460|ref|ZP_01307979.1| putative RNA-methyltransferase [Oceanobacter sp. RED65]
 gi|94426425|gb|EAT11414.1| putative RNA-methyltransferase [Oceanobacter sp. RED65]
          Length = 154

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +PQ+  N G + R   N    QL L+ P      EK    +        +V V+ +
Sbjct: 4   IALFEPQIAPNTGNIIRLCANNGC-QLHLIEPMGFNLEEKKLRRAGLDYHEFANVSVYPD 62

Query: 77  ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               KEA+ D      TT  + +  K    P +                ++FG E  GL+
Sbjct: 63  YWAFKEAMKDKRIFACTTKGSGHYHKVKYQPDDV---------------LLFGAETHGLS 107

Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +E +   +    I  P+ P   SLN+S +V ++  E    +  S  
Sbjct: 108 DEVMESIDPSMRIRIPMLPDSRSLNLSNSVAIISLEAWRQNDFSGG 153


>gi|30250229|ref|NP_842299.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
 gi|30181024|emb|CAD86214.1| rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
           [Nitrosomonas europaea ATCC 19718]
          Length = 154

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           IIL  P++  N G + R   N    QL L+ P     S++    +       +  R  V 
Sbjct: 4   IILHQPEIPPNTGNIIRLCANTG-AQLHLIRPLGFDLSDRQLRRA--GLDYHEWARLTVH 60

Query: 75  SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L   +   D   I+A T R              A   + ++    N   +FG E  GL
Sbjct: 61  EDLASCLKLMDGCRIFAVTTR--------------ATHHHGKVAYTGNDVFLFGSETRGL 106

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +     +  I  P+     SLN+S A  ++++E    
Sbjct: 107 PAEVLENFPQDQRIRIPMLSASRSLNLSNAAAVIIYEAWRQ 147


>gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister
           microaerophilus UPII 345-E]
 gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister
           microaerophilus UPII 345-E]
 gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 170

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 24/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G ++R     +LT L LV P      +K    +         + +   
Sbjct: 3   IVLVEPEIPGNTGNISRLCAAEHLT-LHLVEPLGFSIDDKHLKRA--GLDYWKFLDIHIH 59

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F ++K+ +    F Y TT                A  +   I   ++  ++FG+E  G
Sbjct: 60  KNFESVKQMLKGKRFFYNTT---------------KAKHVYTDISYKEDDVLVFGKETKG 104

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E +    ++ I  P+     SLN+S AV ++  E +  +
Sbjct: 105 LPEELLLENQDSCIRIPMVEEARSLNLSNAVAIVALEALRQT 146


>gi|52079368|ref|YP_078159.1| rRNA methylase-like protein [Bacillus licheniformis ATCC 14580]
 gi|52784729|ref|YP_090558.1| hypothetical protein BLi00957 [Bacillus licheniformis ATCC 14580]
 gi|319646849|ref|ZP_08001078.1| CspR protein [Bacillus sp. BT1B_CT2]
 gi|52002579|gb|AAU22521.1| rRNA methylase homolog [Bacillus licheniformis ATCC 14580]
 gi|52347231|gb|AAU39865.1| CspR [Bacillus licheniformis ATCC 14580]
 gi|317391437|gb|EFV72235.1| CspR protein [Bacillus sp. BT1B_CT2]
          Length = 157

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P++  N G +AR     + T L L+ P      +K    +       +  +V   
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E + D H            F  +    +      +     ++   +FGRE  GL  
Sbjct: 62  DSLDE-LFDAH--------PEGRFFFITKFGQKPHTSFDYSDQNEDYFFVFGRETNGLPK 112

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 113 ELIEQNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151


>gi|187476751|ref|YP_784775.1| RNA methyltransferase [Bordetella avium 197N]
 gi|115421337|emb|CAJ47842.1| putative RNA methyltransferase [Bordetella avium 197N]
          Length = 156

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 13/164 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +ILV P++  N G   R   N    QL LV P      +     +         ++V  +
Sbjct: 4   VILVCPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDTRLRRAGLDYHEWQPMKVHDD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+A      AT A     F   L            +   +    +FGRE  GL+ E 
Sbjct: 63  LPAALA------ATGAPPERIF--ALT--TQGARSAAGMQYQRGDVFVFGRETAGLSPEH 112

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +AL      +  P+ P   SLN+S AV + V+E          +
Sbjct: 113 VALFAPGQRLRLPMRPGQRSLNLSNAVAVTVFEAWRQQGYEGGE 156


>gi|154508741|ref|ZP_02044383.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798375|gb|EDN80795.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC
           17982]
          Length = 153

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           II  +P++  N G   R       + L LV P  G+  + A+   A  D   +  V V  
Sbjct: 4   IIFWEPEIPGNTGAAIRLSACTG-SMLHLVKPL-GFDMDDAKLRRAGLDYHDLAHVMVHD 61

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +L EA+A++   ++A T                A  +   +      G++FGRE  GL+ 
Sbjct: 62  SLDEALAEVPGRVWALTG--------------HATTMYSDVSYADGDGLLFGRESVGLSE 107

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +        +   +     SLN++ +  ++++E    
Sbjct: 108 DAMHHPRVEDRVRIQMVDGVRSLNLANSASIVLYEAWRQ 146


>gi|326773466|ref|ZP_08232749.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505]
 gi|326636696|gb|EGE37599.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505]
          Length = 168

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +I  +P++  N G   R   N   + L LV+P   +  + A+   A  D   + + RV +
Sbjct: 20  VIFFEPRIPGNTGAAIRLSANTG-SMLHLVDP--LFDMDDAKLRRAGLDYHDLANTRVHA 76

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +E +  +   I+A T+                  L  ++    +  ++FG E  GL  
Sbjct: 77  TWQECLEQIPGRIFAFTS--------------HTERLYTQVDWRGDDALLFGPEPTGLPQ 122

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     +A +  P+     SLN++ +  + ++E   +
Sbjct: 123 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRS 161


>gi|20806774|ref|NP_621945.1| rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4]
 gi|20515234|gb|AAM23549.1| predicted rRNA methylase (SpoU class) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 156

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++ +N G +AR       ++L LV P      EK    +      +  + V+ N
Sbjct: 5   VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKDVRRAGLDYWPLLDLTVYEN 63

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+E +       F  ATT R    +  V    E                +IFG+E  GL 
Sbjct: 64  LQEFLEKHKGKKFYLATT-RANKYYHEVKYEDE--------------AFLIFGKETTGLP 108

Query: 134 ----NEEIALSNAIISFPVNPL--FPSLNISQAVLLMVWECMEN 171
               +E        I  P++    + SLN+S +V ++V+E ++ 
Sbjct: 109 QWLIDEYYEDC---IRIPMHEKILWRSLNLSNSVAIIVYEALKQ 149


>gi|291520515|emb|CBK75736.1| Predicted rRNA methylase (SpoU class) [Butyrivibrio fibrisolvens
           16/4]
          Length = 165

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           IIL +P++  N G + R       T+L L+ P     ++K    +       D + VF  
Sbjct: 4   IILHEPEIPANTGNIGRTCCATG-TRLHLIEPLGFVLTDKTVKRA--GMDYWDKLEVFRY 60

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               + K    D     ATT   R + +    P                  I+FG+E  G
Sbjct: 61  DDWDDFKAKNPDAKIYMATTKAKRTHTEVNYEPDCY---------------IMFGKESAG 105

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +          +  P+     SLN+S +V ++++E +  
Sbjct: 106 IPEEILVDNEENC---VRIPMGHDIRSLNLSNSVAIILYEALRQ 146


>gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           reducens MI-1]
          Length = 152

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSVR 72
           I+LV+P++  N G +AR       + L LV P  G+ ++      A  D      +   +
Sbjct: 3   IVLVEPEIPANTGNIARTCSVTGAS-LHLVEPL-GFSTDDRYLKRAGLDYWHLLDLHYHK 60

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+ L++   +  F Y TT   R        P   A          +N  ++FG+E  GL
Sbjct: 61  SFAALQQQYPEGRFWYFTTKGGR--------PYHEASF-------EENDFLVFGKETAGL 105

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +A + +  +  P+     SLN+S +V + V+E +  
Sbjct: 106 PKELLAANPDNCLRIPMLGQVRSLNLSNSVAIAVYEALRQ 145


>gi|258514114|ref|YP_003190336.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777819|gb|ACV61713.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 168

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 67/177 (37%), Gaps = 28/177 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G + R     + + L LV P      +K    +      +  +    +
Sbjct: 3   IVLVEPEIPANTGNIVRTCAATS-SVLHLVRPLGFSTEDKYLKRAGLDYWYLVEIYYHDS 61

Query: 77  LKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             EA+ +       +++    AR           +            G    ++FG+E  
Sbjct: 62  F-EALKEKYPLGTFYYVSTKAAR------HYCDVEY-----------GPGDFLVFGKETR 103

Query: 131 GLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           GL  E +  +N+   +  P+     SLN++ +V ++++E +     +  +     N 
Sbjct: 104 GLP-ESLLQANSGNCVRIPMVSDARSLNLANSVAIVLYEALRQQAFAGLETAGRVNP 159


>gi|167747295|ref|ZP_02419422.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662]
 gi|167653273|gb|EDR97402.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662]
          Length = 166

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 19/171 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R         L L+ P     +EK    +       +   VR +
Sbjct: 4   IVLHEPEMPANTGNIGRTCVACG-AVLHLIEPLGFKLNEKMIKRA--GLDYWEHLDVRTY 60

Query: 75  SNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N ++ +   H   IY  T ++R  +  V               + ++V ++FG+E  G+
Sbjct: 61  VNFEDFLEKNHHPKIYMATTKSRQTYADVTY-----------GGADEDVYLMFGKESAGI 109

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             E +       +  P+ P   SLN+S +V ++ +E +        +   +
Sbjct: 110 PEEILLDYKETAVRIPMLPEIRSLNLSNSVAIVAYEVLRQQGFDHFQREGQ 160


>gi|260548986|ref|ZP_05823208.1| rRNA methylase [Acinetobacter sp. RUH2624]
 gi|260408154|gb|EEX01625.1| rRNA methylase [Acinetobacter sp. RUH2624]
          Length = 157

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 24/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62

Query: 77  LKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  +AD     +  ++  T +      +V   +               V ++ G E  G
Sbjct: 63  IEACLADLKSKGVEHVFPLTTKGSATPHTVDLNR--------------PVALLMGPETRG 108

Query: 132 LTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E + L       I  P+     SLN+S A  ++V+E     
Sbjct: 109 LP-EHVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|195978738|ref|YP_002123982.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975443|gb|ACG62969.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 199

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N T L ++ P      ++    +       D   +R +
Sbjct: 36  VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDIRFY 92

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +A                  V++     +  ++     Q+   +FGRE  GL  
Sbjct: 93  DHLDEFLAQCD-----------GSLHVISKFADQVYSDKDYNDRQSHYFLFGREDTGLP- 140

Query: 135 EEI---ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
            E+     ++  +  P+N     SLN+S AV ++V+E +   
Sbjct: 141 -ELFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQ 181


>gi|169351445|ref|ZP_02868383.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552]
 gi|169291667|gb|EDS73800.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552]
          Length = 246

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 16/174 (9%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           Y+ +L+N+     ++LV+P    N+G + R M  F    L ++ P       K   +S  
Sbjct: 86  YSMELKNTNH---VVLVNPGDMGNMGTIIRTMLGFGYNDLAIIRPGVDVFDPKVVRASMG 142

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A   I +   F    + +            NR+ +  +L   + A  ++      +N  +
Sbjct: 143 AIFNI-NFEYFDTFDDYLHKYP--------NRDIYPLML---KGAKNIHLIEPDDKNYSL 190

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +FG E  GL +E +    +I   P +    SLN+S A+ + ++   ++   S +
Sbjct: 191 VFGNESSGLPDEFLNYGQSI-FIPHSDKIDSLNLSMALGITLYHFSKDIFKSKQ 243


>gi|33595003|ref|NP_882646.1| rRNA methylase [Bordetella parapertussis 12822]
 gi|33565079|emb|CAE40030.1| rRNA methylase [Bordetella parapertussis]
          Length = 172

 Score = 84.0 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 24/181 (13%)

Query: 1   MTPYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           M  +    +     P    ++LV P++  N G   R   N    QL LV P      +  
Sbjct: 1   MAVFPSCTRRPRAHPAMFHVVLVSPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDAR 59

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNE 113
              +         V+V   L +A+A        ++A T R                 L +
Sbjct: 60  LRRAGLDYHEWQPVQVHDTLPQALAATGAAAARVFALTTRA-------------PASLAD 106

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             F   +V  +FGRE  GL+   +AL      +  P+ P   SLN+S AV + V+E    
Sbjct: 107 MAFQAGDV-FVFGRETAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 165

Query: 172 S 172
           S
Sbjct: 166 S 166


>gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 175

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +++ K P+++++D     N IG V R    F +  + L       P+ +   ++  A+
Sbjct: 16  EFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTALGAE 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGII 124
             +D V  + + ++A+  L        ++R      +   E +I+L+E +    +   ++
Sbjct: 76  NSVDWV-YYEDTRDALRGL--------KDRGFTICAIEQAERSIMLDELVVDKAKGYAVV 126

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  G+  E + L +  I  P      SLN+S A  +++WE  + 
Sbjct: 127 LGNEVKGVRQEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIWEFFKQ 173


>gi|33599281|ref|NP_886841.1| rRNA methylase [Bordetella bronchiseptica RB50]
 gi|33575327|emb|CAE30790.1| rRNA methylase [Bordetella bronchiseptica RB50]
          Length = 172

 Score = 83.6 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 24/181 (13%)

Query: 1   MTPYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           M  +    +     P    ++LV P++  N G   R   N    QL LV P      +  
Sbjct: 1   MAVFPSCTRRPRAHPAMFHVVLVSPEIPPNTGNAIRLCANTG-AQLHLVRPLGFELDDAR 59

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNE 113
              +         V+V   L +A+A        ++A T R                 L +
Sbjct: 60  LRRAGLDYHEWQPVQVHDTLPQALAATGAAAARVFALTTRA-------------PASLAD 106

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             F   +V  +FGRE  GL+   +AL      +  P+ P   SLN+S AV + V+E    
Sbjct: 107 MAFQAGDV-FVFGRETAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 165

Query: 172 S 172
           S
Sbjct: 166 S 166


>gi|33865749|ref|NP_897308.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632919|emb|CAE07730.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. WH 8102]
          Length = 166

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 30/174 (17%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +        ++L +PQ+  N G +AR    F L  L L+ P      ++A   +    
Sbjct: 1   MTIPEPNSSLRVVLYEPQIPPNTGNIARTCAAFRLP-LALIEPLGFCIDDRAVRRA--GL 57

Query: 66  CVIDSVR--VFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                V+  + SNL   +  L   H +   +             +     L E  F   +
Sbjct: 58  DYWPHVQLSIHSNLDHLLGQLPHPHRLIGCS-------------RHGGDSLGEFQFQHGD 104

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
           V ++FGRE  GL        + I++ P+             SLN+S A  L+ +
Sbjct: 105 V-LLFGREDNGLPGHVRDQCDRILTIPMPGGVDADGQGGVRSLNLSVACALVSY 157


>gi|313114962|ref|ZP_07800457.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622722|gb|EFQ06182.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 168

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 19/166 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CV 67
           N      I+LV+P++ +N G VAR        +L LV P  G+  +  +   A  D    
Sbjct: 2   NEKPTLNIVLVEPRIPQNTGNVARTCACTAC-RLHLVGPM-GFAIDDKKLKHAGLDYWHY 59

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D +  + +L E  A              N          A      +       ++FGR
Sbjct: 60  LD-ISYYDSLDEFFA-------------KNSGPYYYFTTKAPQRYTDVSYPDGAYLVFGR 105

Query: 128 ERWGLTNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL    +A +       P+     SLN+S +V + V+E +   
Sbjct: 106 EDAGLPEALLAANQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151


>gi|227113255|ref|ZP_03826911.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 154

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R   N   T L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +   A+        TT  +R   +    P +                ++FG E  G
Sbjct: 61  KNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPDDV---------------LLFGSETSG 105

Query: 132 LTNEEI---ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +EI     S+  I  P+     SLN+S AV ++ +E    
Sbjct: 106 LP-DEIRNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147


>gi|170079356|ref|YP_001735994.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169887025|gb|ACB00739.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 151

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P ++LV PQ+  N G +AR     + T+L LV P      ++    +         V++ 
Sbjct: 2   PQLVLVHPQIPPNTGNIARTCAATD-TELHLVGPLGFEIGDRHLKRA--GLDYWPHVKLS 58

Query: 74  -FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +L+      HF+ A  T   R    SV    +      +         ++FG E  G
Sbjct: 59  FYPDLE------HFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDW-----LLFGSETQG 107

Query: 132 LTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMEN 171
           L  E +   +A ++ P+N     SLN+S +  + ++E    
Sbjct: 108 LPAELLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQ 148


>gi|34499838|ref|NP_904053.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34105688|gb|AAQ62042.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 154

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 60/163 (36%), Gaps = 25/163 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
            ++L  P++  N G V R   N    +L LV P  G+P E A+   A      +  RV  
Sbjct: 3   TVVLFQPEIPPNTGNVIRLCANTGC-ELHLVKPM-GFPLEDAKLRRAG-LDYHEYARVVV 59

Query: 75  -SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +    +          ATT                    ++RI        +FG E  
Sbjct: 60  HEDWDACLRTLQGRRIFAATT---------------KGATRHDRISYQPGDVFLFGPESR 104

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL  + +A   +   I  P+ P   SLN+S AV + V+E    
Sbjct: 105 GLPQDVLAALPAQQRIRLPMRPESRSLNLSNAVAVTVFEAWRQ 147


>gi|227329687|ref|ZP_03833711.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 154

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R   N   T L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +   A+        TT  +R   +    P +                ++FG E  G
Sbjct: 61  KNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPDDV---------------LLFGSETSG 105

Query: 132 LTNEEI---ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +EI     S+  I  P+     SLN+S AV ++ +E    
Sbjct: 106 LP-DEIRNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147


>gi|116070592|ref|ZP_01467861.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. BL107]
 gi|116065997|gb|EAU71754.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. BL107]
          Length = 166

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 30/174 (17%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             + N      + L +P++  N G +AR    F L  L L+ P      +++   +    
Sbjct: 1   MSIVNPEAPLRVALFEPRIPPNTGNIARTCAAFQLP-LSLIEPLGFQIDDRSLRRA--GL 57

Query: 66  CVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                V+V     F  LK+ +   + I   + R                 L+E  F   +
Sbjct: 58  DYWPHVQVSTHGSFDALKDGLLPHNRIIGCSRRG-------------GSCLSEFEFQHGD 104

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166
           V ++FGRE  GL  +     ++I++ P+             SLN+S A  L+ +
Sbjct: 105 V-LLFGREDTGLPEDIRDQCHSIVTIPMPGAAAPSGQGGVRSLNLSVACALVTY 157


>gi|56419019|ref|YP_146337.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|261418815|ref|YP_003252497.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC61]
 gi|297531223|ref|YP_003672498.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           C56-T3]
 gi|319765631|ref|YP_004131132.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC52]
 gi|56378861|dbj|BAD74769.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|261375272|gb|ACX78015.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC61]
 gi|297254475|gb|ADI27921.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           C56-T3]
 gi|317110497|gb|ADU92989.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC52]
          Length = 157

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N G +AR     + T L L+ P      +K    +         V +  +
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-TSLHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61

Query: 75  SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +L E  A     + +FI     R  ++F              +   + +++  +FGRE 
Sbjct: 62  DSLDELFARFPEGEFYFITKFGRRYYDSF--------------DFSDTEKHIFFVFGRET 107

Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL  E +    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 108 TGLPKELLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151


>gi|119473213|ref|ZP_01614899.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119444544|gb|EAW25860.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 154

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 19/166 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N   + L L+ P      +K    +         V+  ++
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGFS-LHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +       +YA T +                  +          ++FG E  GL +
Sbjct: 63  FEAYLEKCKPKKVYACTTK--------------GSQFHHEARYEAGDCLVFGPETRGLPD 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E I        +  P+ P   S+N+S AV + V+E        + +
Sbjct: 109 EMIQALPNEQRVRIPMQPNSRSMNLSNAVAVFVYESWRQLGFPNAQ 154


>gi|225871140|ref|YP_002747087.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700544|emb|CAW95025.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 182

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N T L ++ P      ++    +       D   +R +
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDIRFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +A                  V++     +  +E     Q+   +FGRE  GL  
Sbjct: 76  DHLDEFLAQCD-----------GSLHVISKFADRVYSDEAYNDRQSHYFLFGREDTGLPE 124

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +   ++  +  P+N     SLN+S AV ++V+E +   
Sbjct: 125 PFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQ 164


>gi|313471795|sp|A0KEQ6|TRML_AERHH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 156

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++  N G + R   N    +L L+ P      +K    +       +   V   
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTG-YRLHLIEPLGFEWDDKRVKRA--GLDYHEFAEVKRW 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F    EA+A    ++A T + R    +V            +  +G    ++FG E  G
Sbjct: 61  PNFEAFLEAVAP-TRVFACTTKGRTAHSAV------------QFAAGD--ALLFGPESRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E I        +  P+ P   S+N++ AV + V+E    
Sbjct: 106 LPIEIIESLPFEQRLRIPMLPQSRSMNLANAVAVFVYESWRQ 147


>gi|293192913|ref|ZP_06609757.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292819969|gb|EFF78968.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 153

 Score = 83.2 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           II  +P++  N G   R       + L LV P  G+  + A+   A  D   +  V V  
Sbjct: 4   IIFWEPEIPGNTGAAIRLSACTG-SMLHLVEPL-GFDMDDAKLRRAGLDYHDLAHVMVHD 61

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +L EA+A++   ++A T                A  +   +      G++FGRE  GL+ 
Sbjct: 62  SLDEALAEVPGRVWALTG--------------HATTMYSDVSYADGDGLLFGRESVGLSE 107

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +        +   +     SLN++ +  ++++E    
Sbjct: 108 DAMHHPRVEDRVRIQMVDGVRSLNLANSASIVLYEAWRQ 146


>gi|170724634|ref|YP_001758660.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169809981|gb|ACA84565.1| RNA methyltransferase, TrmH family, group 2 [Shewanella woodyi ATCC
           51908]
          Length = 154

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N    QL L+ P      EK    +       D  RV   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRA--GLDYNDLTRVTRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +  +A+     +  TT  +R++               E  F  ++V ++FG E  G
Sbjct: 61  KDFESFLQAMEGKRIMACTTKGSRHHT--------------ELSFEKEDV-LLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E I     +  +  P+ P   SLN+S AV ++ +E    
Sbjct: 106 LPIEIIESLPTSQRLKIPMTPNSRSLNLSNAVAIISYEAWRQ 147


>gi|117618548|ref|YP_854721.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559955|gb|ABK36903.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 168

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 27/178 (15%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P++P     A    I+L  P++  N G + R   N    +L L+ P      +K    
Sbjct: 2   LAPFSP--HQDAVMLDIVLYQPEIPPNTGNIIRLCANTG-YRLHLIEPLGFEWDDKRVKR 58

Query: 61  SANADCVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +       +   V     F    EA+A    ++A T + R    +V              
Sbjct: 59  A--GLDYHEFAEVKRWPNFEAFLEAVAP-TRVFACTTKGRTAHSAVQF------------ 103

Query: 116 FSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                  ++FG E  GL  E I        +  P+ P   S+N++ AV + V+E    
Sbjct: 104 --AAGDALLFGPESRGLPIEIIESLPFEQRLRIPMLPQSRSMNLANAVAVFVYESWRQ 159


>gi|317471039|ref|ZP_07930414.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|316901480|gb|EFV23419.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 166

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R         L L+ P     +EK    +       +   VR +
Sbjct: 4   IVLHEPEMPANTGNIGRTCVACG-AVLHLIEPLGFKLNEKMIKRA--GLDYWEHLDVRTY 60

Query: 75  SNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N ++ +   H   IY  T ++R  +  V               + ++V ++FG+E  G+
Sbjct: 61  VNFEDFLEKNHHPKIYMATTKSRQTYADVTY-----------GGADEDVYLMFGKESAGI 109

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             E +       +  P+ P   SLN+S +V ++ +E +   
Sbjct: 110 PEEILLDYKETAVRIPMLPEIRSLNLSNSVAIVAYEVLRQQ 150


>gi|307267049|ref|ZP_07548563.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917929|gb|EFN48189.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 156

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++ +N G +AR       + L LV P      EK    +      + ++ V+ N
Sbjct: 5   VVLVEPEIPQNTGNIARTCVLTG-SSLHLVKPLGFSIDEKYVKRAGLDYWPLLNLTVYDN 63

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L++ +       F  ATT   +                   +    N  I+FG+E  GL 
Sbjct: 64  LEQFLEQNKGKKFYLATTKAKKYYH---------------EVKYEDNSYILFGKETAGLP 108

Query: 134 NEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171
              I          I  P++ +    SLN+S +V ++++E +  
Sbjct: 109 KWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149


>gi|283851956|ref|ZP_06369232.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
 gi|283572680|gb|EFC20664.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
          Length = 156

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           ++L +P++ +N G VAR       T L L+ P  G+         A  D     ++ V+ 
Sbjct: 4   VVLFEPEIPQNTGSVARLCAATK-TPLHLIKPL-GFSLADRYLKRAGLDYWPHVNLTVWD 61

Query: 76  NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           N     A      I ATTA NR +  +                   +  ++FG E  GL 
Sbjct: 62  NFDAFRAARPQSRIVATTAGNRGHTPAAYHVFAYRP----------DDALVFGTESRGLP 111

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +  + A +  P+     SLN++ A  ++++E +  
Sbjct: 112 ESLLDTAGARLRIPIWGQVRSLNLANAASVVLYEALRA 149


>gi|257063675|ref|YP_003143347.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens
           DSM 20476]
 gi|256791328|gb|ACV21998.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens
           DSM 20476]
          Length = 159

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +      ++L +P++ +N G VAR       T L LV P     +E+    S       D
Sbjct: 2   SDKPHIHVVLFEPEIPQNTGNVARTCAVVGAT-LHLVEPMGFRLTERNLKRSGC--DYWD 58

Query: 70  SVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFG 126
            V V   ++++  ++           + N+   +     E           G +V ++FG
Sbjct: 59  DVDVVKHASVEAFLSQ----------HGNDELHLFTSHTETCYTDVRYGEGGGDVYLVFG 108

Query: 127 RERWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           RE  G+  + +A   +  +  P+     SLN+S AV + V+E +   
Sbjct: 109 RESRGIDEDVLAAHVDRCVRIPMRHNMRSLNLSNAVAVGVYEVIRQW 155


>gi|119487746|ref|ZP_01621255.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
 gi|119455579|gb|EAW36716.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
          Length = 154

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 26/165 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           P ++L+ PQ+  N G VAR       T+L LV P     S++    +         V  +
Sbjct: 2   PRVVLIQPQIPPNTGNVARTCAAT-RTELHLVGPLGFEISDRDLRRA--GLDYWPYVPLK 58

Query: 73  VFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + S++ EA    H          + R + N+               +     +  ++FG 
Sbjct: 59  IHSSI-EAFKHYHQYWGGRWIGFSKRGKQNY--------------AQFQYQADDWLLFGP 103

Query: 128 ERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
           E  GL+ E ++  +   S P+  P   SLN+S +V + + E    
Sbjct: 104 ETTGLSPELLSACDVTTSIPMREPGVRSLNLSVSVAIGLLEAGRQ 148


>gi|326389368|ref|ZP_08210936.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994731|gb|EGD53155.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 156

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++ +N G +AR       ++L LV P      EK    +      +  + V+ N
Sbjct: 5   VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDN 63

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L++ +       F  ATT   +                   +    N  I+FG+E  GL 
Sbjct: 64  LEQFLEQNKGKKFYLATTKAKKYYH---------------EVKYEDNSYILFGKETAGLP 108

Query: 134 NEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171
              I          I  P++ +    SLN+S +V ++++E +  
Sbjct: 109 KWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149


>gi|212640174|ref|YP_002316694.1| putative rRNA methylase (SpoU class) [Anoxybacillus flavithermus
           WK1]
 gi|212561654|gb|ACJ34709.1| Predicted rRNA methylase (SpoU class) [Anoxybacillus flavithermus
           WK1]
          Length = 160

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N G +AR       T L L+ P      +K    +       D V V  +
Sbjct: 8   VVLYQPEIPANTGNIARTCAATG-TSLHLIRPLGFSTDDKMLKRA--GLDYWDYVDVHYY 64

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L+E      +  F + T        K+     +            ++   +FGRE  G
Sbjct: 65  DSLQELFDKYKEGEFFFIT-----KFGKTYYTSFDY-------SDQTKDYFFVFGRETSG 112

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  + I       +  P+N    SLN+S    ++V+E +   
Sbjct: 113 LPKDLIENNMERCLRIPMNEYVRSLNLSNTAAILVYEALRQQ 154


>gi|311067376|ref|YP_003972299.1| putative rRNA methylase [Bacillus atrophaeus 1942]
 gi|310867893|gb|ADP31368.1| putative rRNA methylase [Bacillus atrophaeus 1942]
          Length = 157

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P++  N G +AR     N T L L+ P      +K    +       +  +V   
Sbjct: 5   VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E            A  +  F  +    +      +     ++   +FGRE  GL  
Sbjct: 62  DSLEELFE---------AYQKGQFFLITKFGQKPHTSFDYTDIDEDYFFVFGRETSGLPK 112

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 113 DLIEKNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151


>gi|262369376|ref|ZP_06062704.1| rRNA methylase [Acinetobacter johnsonii SH046]
 gi|262315444|gb|EEY96483.1| rRNA methylase [Acinetobacter johnsonii SH046]
          Length = 159

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 12/163 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++  
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWET 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             E +A+L    A    + N    +                 + V ++ G E  GL  E+
Sbjct: 63  FDECLANL----ALKGVDINAIYPLTT---KGTETPHTSDLNRPVALLMGPETRGLP-EQ 114

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + +       I  P+     SLN+S A  ++V+E         
Sbjct: 115 VRMLFPKEHWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFKP 157


>gi|255654586|ref|ZP_05399995.1| putative RNA methylase [Clostridium difficile QCD-23m63]
 gi|296449360|ref|ZP_06891142.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296880706|ref|ZP_06904658.1| RNA methyltransferase [Clostridium difficile NAP07]
 gi|296261830|gb|EFH08643.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296428279|gb|EFH14174.1| RNA methyltransferase [Clostridium difficile NAP07]
          Length = 156

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++ +N G + R       + L LV P      +K            D   +   
Sbjct: 5   IVLVEPEIPQNTGNIIRTCAATG-STLHLVKPLGFSLDDKHLKR--CGLDYWDIADIQYY 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F  L+E   +  + ++TT                A   +  +   +N  I+FG+E  G
Sbjct: 62  DSFEELQEKYPNSKYFFSTT---------------KAKQSHSDVKYEENCFIVFGKETKG 106

Query: 132 LTNEEIALSNA--IISFPVN--PLFPSLNISQAVLLMVWECMEN 171
           L  E +  +N    I  P+       SLN+S +V ++V+E +  
Sbjct: 107 LP-ETLLKANMDTCIRVPMLDVEKARSLNLSNSVAIVVYEALRQ 149


>gi|51245784|ref|YP_065668.1| rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54]
 gi|50876821|emb|CAG36661.1| probable rRNA methylase homolog (CspR) [Desulfotalea psychrophila
           LSv54]
          Length = 165

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 23/177 (12%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKAR 58
           MT Y     +      I+LV+P++  N G +AR       T   L LV+P      +K  
Sbjct: 1   MTTYRCPTVDYTSHLNIVLVEPEIPPNTGSIARLC---GATNAILHLVHPLGFSTDDKHL 57

Query: 59  SSSANADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
             +         V +    + +  ++              +       K        +  
Sbjct: 58  RRA--GLDYWKFVNIVYWESFEAFLSQCD----------KDNMYFFTTKTEKSYTEAKFK 105

Query: 117 SGQNVGIIFGRERWGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            G    +IFG+E  GL    + L  +  ++ P+ NP   SLN++    ++++E M  
Sbjct: 106 QGD--FLIFGKETKGLPKPILDLHPDRCLTLPMPNPNIRSLNLAMTAGIVLYEAMRQ 160


>gi|332307769|ref|YP_004435620.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175098|gb|AEE24352.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 165

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N     L L+ P      +K    +        +V   ++
Sbjct: 15  IVLYQPEIPPNTGNIIRLCANTGFA-LHLIEPLGFEWDDKRVRRAGLDYHEFANVVRHAS 73

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+  I       ++A T +    F               +    +   ++FG E  GL N
Sbjct: 74  LEAYIESRQPKRVFACTTKGTTFF--------------AKAEYQKGDALLFGPETRGLPN 119

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E I        +  P+     S+N+S AV + V+E    
Sbjct: 120 EVIQSLPPEQRVRIPMLADSRSMNLSNAVSVFVYEAWRQ 158


>gi|309812297|ref|ZP_07706052.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp.
           Ellin185]
 gi|308433602|gb|EFP57479.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp.
           Ellin185]
          Length = 171

 Score = 82.8 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 22/180 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74
           I+LV PQ+  N G + R   N   + L LV P        AR           +  V V 
Sbjct: 3   IVLVAPQIAPNTGNIIRLAANVGAS-LHLVEPLGFSMD--ARLLRRGGLDYHELADVHVH 59

Query: 75  SNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +++  A A       A TAR R  + +V    +                ++FG E  GL 
Sbjct: 60  ADVDAARAACPGRWLALTARARRRYDAVDYRDDD--------------VLVFGCEATGLP 105

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           +  +A   ++  +  P+ P   SLN+  AV ++ +E       +   +       A   +
Sbjct: 106 DYLLATFSADERLRIPMRPDNRSLNLGNAVAVVAYEAWRQLGFTGAADDGTGTLEALSAD 165


>gi|218247018|ref|YP_002372389.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257060094|ref|YP_003137982.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8802]
 gi|218167496|gb|ACK66233.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8801]
 gi|256590260|gb|ACV01147.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8802]
          Length = 152

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 24/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV PQ+  N G +AR       T+L LV P     S++    +          ++   
Sbjct: 4   IVLVHPQIPPNTGNIARTCAATE-TELHLVGPLGFELSDRYLKRA--GLDYWPYVNLHYH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +L E  +        +   + R ++ +                    +N  ++FG E  
Sbjct: 61  KDLAEFYSVYQQHTGRLIGFSVRGQSPYHQWTF--------------QENDWLLFGSETE 106

Query: 131 GLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMEN 171
           GL    +   +A +  P++     SLN+S +V + ++E    
Sbjct: 107 GLPKSVLENCDATLYIPMSQSKVRSLNLSVSVTIGLFEARRQ 148


>gi|312143853|ref|YP_003995299.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp.
           'sapolanicus']
 gi|311904504|gb|ADQ14945.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp.
           'sapolanicus']
          Length = 168

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV+P++ +N G +AR     + + L L+ P     S+K    +         + +  +
Sbjct: 3   IVLVEPEIPQNTGNIARTCAVTD-SALHLIRPLGFSTSDKHLKRA--GLDYWHKLDINYY 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L E      D  F YATT                A      +    +   +FG+E  G
Sbjct: 60  DSLDEFFKKNKDGRFFYATT---------------KAANSYHELDYQADDYFLFGKETAG 104

Query: 132 LTN----EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L      + +      I  P+     SLN++ +V ++++E +  
Sbjct: 105 LPETLLKDNLEYC---IRIPMKDSLRSLNLANSVSIIIYEALRQ 145


>gi|304436490|ref|ZP_07396464.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370536|gb|EFM24187.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 165

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR      + +L LV P      +K    +      +  V    +
Sbjct: 3   IVLVEPEIPGNTGNIARLCAGTGM-ELHLVQPLGFSTDDKHLKRAGLDYWHLVRVHYHDS 61

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                   H    +  +T AR+                ++ +I       ++FG+E  GL
Sbjct: 62  FAALHQQYHEHTFYFCSTKARHSY------------CDISYKIDD----FLVFGKESAGL 105

Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +    +N I   P+     SLN+S AV ++ +E +  
Sbjct: 106 PESLLTDYEANTI-RIPMREEARSLNLSNAVAVVAFEALRQ 145


>gi|260887246|ref|ZP_05898509.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|330838996|ref|YP_004413576.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
 gi|260863308|gb|EEX77808.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|329746760|gb|AEC00117.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
          Length = 160

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 26/176 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++P++  N G +AR      + +L LV P      +K    +      +  V    N
Sbjct: 3   IVLIEPEIPGNTGNIARLCAVSGI-ELHLVKPLGFSVEDKYLKRAGLDYWHLVKVHYHEN 61

Query: 77  LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-- 131
             E +   A   F Y +    R+                + +   ++  ++FG+E  G  
Sbjct: 62  FSEVLRLFAGRQFYYCSKKAPRSY---------------DAVSYTEDDFLVFGKETAGIP 106

Query: 132 --LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             L  E        I  P+     SLN+S A  ++ +E M        ++    + 
Sbjct: 107 EALLEEHWEDC---IRIPMRLGARSLNLSSAAAIVAYEAMRQIGFPGLESSGHWHE 159


>gi|294789319|ref|ZP_06754557.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
           29453]
 gi|294482744|gb|EFG30433.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
           29453]
          Length = 264

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 14/165 (8%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
                 ++L + Q   NIG + R+     + Q+ L        S K   ++  A  ++  
Sbjct: 109 PISDDCVVLENIQNSGNIGTILRSAAAAGVAQIVLSKGCADVWSPKVLRAAMGAHFLLKI 168

Query: 71  VRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                 L   E+ +    + AT    +NNF             ++++   + V  +FG E
Sbjct: 169 HERVDLLDWRESFSG--DVLATALTEKNNFSLY----------DKQLDLTKPVAWVFGNE 216

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++ + +A +NA +  P+     SLN++ A  + ++E M   +
Sbjct: 217 GSGVSADMLAQANATVKIPMIGATESLNVAMAATICLFEQMRQRL 261


>gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus]
          Length = 144

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 26/159 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G +AR       T L LV P      +K    +        +V +   
Sbjct: 5   IVLVEPEIPANTGNIARTCAATG-THLHLVRPLGFNTDDKTLKRA--GLDYWYAVHIEYH 61

Query: 74  --FSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             F  L++   +  F Y +T A  R                 +  F   +  ++FG+E  
Sbjct: 62  DSFEELQQKYPEGRFFYTSTKATKRY---------------CDIAFQDGD-FLVFGKETK 105

Query: 131 GLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL  E +A + ++ I  P+     SLN+S +  ++V+E 
Sbjct: 106 GLPPELLAANPDSCIRMPMTDKVRSLNLSNSAAIIVYEA 144


>gi|222530099|ref|YP_002573981.1| TrmH family group 2 RNA methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456946|gb|ACM61208.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 154

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              I+L +P++  N G +AR       ++L L+ P      +K    +           V
Sbjct: 2   PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +++ +L E        +  Y +T   +   +   AP E             N  ++FG+E
Sbjct: 59  KIYKDLNEFFEKNRGANVFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    I    +     P+     SLN+S +V ++++E +  
Sbjct: 104 TAGLPQWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQ 147


>gi|253686540|ref|YP_003015730.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753118|gb|ACT11194.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 154

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R   N   T L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +   A+        TT  +R   +    P +                ++FG E  G
Sbjct: 61  KNYQDFLAAVPGKRIFACTTKGSRPYDQPAYQPGDV---------------LLFGSETSG 105

Query: 132 LTNEEI---ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +EI     S+  I  P+     SLN+S AV ++ +E    
Sbjct: 106 LP-DEIRNGFESDFRIRIPMQSNNRSLNLSNAVAIISYEAWRQ 147


>gi|296394203|ref|YP_003659087.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181350|gb|ADG98256.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 295

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 35/197 (17%)

Query: 3   PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQ-LRL---VNPRDGWP 53
           P A   Q+  + P     V++LV+P+   N+G   RA   F  +  L L   V+P     
Sbjct: 114 PQALGPQDDWEKPGHAPLVVVLVEPRDPGNVGTALRAAHAFGASAFLVLGDGVDPH---- 169

Query: 54  SEKARSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAI 109
           + KA  SSA +   +  VR   ++  A+  L      ++ATTA           P + A 
Sbjct: 170 NPKAARSSAGSLFAVPVVR-ERDVAAALGQLRDAGLLLFATTA-------DADLPLDEAE 221

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL-----FPSLNISQAVLLM 164
            L +R         +FG E  GL       ++  I+ P+ P        SLN++ A  + 
Sbjct: 222 SLLQR-----PCAWLFGNEASGLPEPAAQAADRRIAVPMRPTPGFAPIESLNLAVAAGIC 276

Query: 165 VWECMENSIVSSEKNVK 181
           ++E        + + V 
Sbjct: 277 LYETARQRSRQAPRPVG 293


>gi|254422130|ref|ZP_05035848.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196189619|gb|EDX84583.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 161

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 71/177 (40%), Gaps = 25/177 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           P I+LV+P++  N G +AR       T L LV P     S++    +         V   
Sbjct: 2   PSIVLVNPEIPPNTGNIARTCAATE-TPLHLVMPLGFELSDRYLKRA--GLDYWPYVDLH 58

Query: 73  VFSNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  ++++    A A    +   +A+    +  +   ++                ++FG E
Sbjct: 59  IHQSIEDFWQHAQAKGGKLIGYSAKATAVYTQLTYRRDDW--------------LLFGCE 104

Query: 129 RWGLTNEEIALSNAIISFPVNP--LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
             GL+ E +   + + + P++      SLN+S    + ++E +  +  S E++ K  
Sbjct: 105 SKGLSAEVLEQCDVVTTIPMSDRRHVRSLNLSVCAAVGLFEAIRQTDNSLEQSDKRA 161


>gi|332139948|ref|YP_004425686.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549970|gb|AEA96688.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 154

 Score = 82.4 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N     L L+ P      +K    +         V+  ++
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFDWDDKRVRRAGLDYHEFAHVKRHAS 62

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L   + D   + ++A T + +     V                 +   +IFG E  GL +
Sbjct: 63  LDAYLEDAKPNRVFACTTKGKAFHSDV--------------SYQKGDALIFGPETRGLPD 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + I        +  P+ P   S+N+S AV + V+E    
Sbjct: 109 DYIQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQ 147


>gi|67923250|ref|ZP_00516736.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
 gi|67854927|gb|EAM50200.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
          Length = 155

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P ++LV+PQ+  N G +AR     N T+L LV P     S++    +         V++ 
Sbjct: 4   PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRA--GLDYWPHVKLH 60

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + NL++ ++            +     +L                +N  ++FG E  GL
Sbjct: 61  YYENLEQFVSF----------QKQQEGRLLGFSVRGKSCYGECNFQENDWLVFGSETEGL 110

Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            ++     + ++  P+ +P   SLN+S +V + ++E +  
Sbjct: 111 PDKFREQCDQMLYIPMPHPQVRSLNLSVSVAIGLFEALRQ 150


>gi|238926814|ref|ZP_04658574.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
           43531]
 gi|238885346|gb|EEQ48984.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
           43531]
          Length = 165

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G +AR      + +L LV P      +K    +      +  V    +
Sbjct: 3   IVLVEPEIPGNTGNIARLCAGTGM-ELHLVRPLGFSTDDKHLKRAGLDYWHLVRVHYHDS 61

Query: 77  LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              A+     +  F + +T        S              I    +  ++FG+E  GL
Sbjct: 62  FA-ALHQQYYEHTFYFCST----KAHHSYCD-----------ISYKTDDFLVFGKESAGL 105

Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +    +N I   P+     SLN+S AV ++ +E +  
Sbjct: 106 PESLLTDYEANTI-RIPMREEARSLNLSNAVAVVAFEALRQ 145


>gi|224373275|ref|YP_002607647.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola
           AmH]
 gi|223589470|gb|ACM93206.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola
           AmH]
          Length = 152

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L +PQ+  N G + R   N    +L +V P     SEKA   +       D +   V+
Sbjct: 4   IVLFNPQIPPNTGNIGRLCVNAG-AKLHIVKPIGFDISEKAVKRA--GLDYWDKLDLTVW 60

Query: 75  SNLKEAIADLHFI---YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  E +  +      +ATT  ++  F+    P +                IIFG E  G
Sbjct: 61  ESTDEFLKHVDTSRCFFATTKTDKPYFEVEYKPGDY---------------IIFGSETKG 105

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +    +  I+ P+     SLN++ +  ++++E +  
Sbjct: 106 IDENILRQNFDNCITIPMTKEGRSLNLAVSTGIILYEAIRQ 146


>gi|205374872|ref|ZP_03227664.1| rRNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
          Length = 160

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 15/162 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR     + T L L+ P      +K    +       + V +
Sbjct: 5   GVHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTEDKMLRRA--GLDYWEHVTI 61

Query: 74  F--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L E                  F  +    E      +     ++   IFGRE  G
Sbjct: 62  VYYDSLDEFFE---------KNAGGEFFYLTKYGEIPHSDFDYSSVDKDYFFIFGRETTG 112

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  + I    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 113 LPKDVIENNKDRALRIPMNENVRSLNLSNTAAILVYEALRQQ 154


>gi|15618570|ref|NP_224856.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
 gi|15836192|ref|NP_300716.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|16752380|ref|NP_444639.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|33242017|ref|NP_876958.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|4376959|gb|AAD18799.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
 gi|8163363|gb|AAF73627.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|8979032|dbj|BAA98867.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|33236527|gb|AAP98615.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|269302444|gb|ACZ32544.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 156

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 28/173 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            ++L  P + +N G + R        +L LV P     ++K    +       D ++  V
Sbjct: 2   RVVLHCPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWDKLQLTV 58

Query: 74  FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +++EA+ D+    I+  + +   ++     P               +   +FG E  G
Sbjct: 59  VDSIEEALHDVPEDQIFCLSTKGSASYTEFSLP--------------SSGTYVFGSESKG 104

Query: 132 LTNEEIAL----SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           L  E +          +  P+     SLN++ +V ++++E +    V+ +KN 
Sbjct: 105 LPKEILKKYYKNC---LRIPMQQDIRSLNLATSVGIVLYEVVRQKTVALQKNP 154


>gi|15613586|ref|NP_241889.1| rRNA methylase [Bacillus halodurans C-125]
 gi|10173638|dbj|BAB04742.1| rRNA methylase [Bacillus halodurans C-125]
          Length = 157

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 14  GPVIILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           G  I+L  P++  N G +AR     N   T+L L+ P      ++    +        +V
Sbjct: 2   GLHIVLYQPEIPANTGNIARTCAGTN---TELHLIRPLGFSTDDRMLKRAGC--DYWPNV 56

Query: 72  RV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +  + ++ E       ++AT       F   +  K  A    +     ++   +FGRE 
Sbjct: 57  NIHYYDSVDE-------LFATFPDGEFYFIETVGSKNYADF--DYSDGSKDHLFVFGRET 107

Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GL N+ I    +     P      SLN+S    ++++E +     + 
Sbjct: 108 TGLPNDLIEQHLDRCFRIPQTDKVRSLNLSNTAAIVIYEAIRQQGFAG 155


>gi|288575697|ref|ZP_06393898.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
 gi|288567117|gb|EFC88677.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
          Length = 260

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 16/171 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           PQ      G  ++L   Q   N+G V R+     + Q+ L N      S K   +   A 
Sbjct: 104 PQGDLPLSGDCVVLDRLQDPGNVGTVLRSAAASGVRQIVLGNDCVDIWSPKVLRAGMGAH 163

Query: 66  CVIDSVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +++   ++S  +L + +         TA +  N   +            ++        
Sbjct: 164 LLLN---IYSRVSLPQWLDTYQDKIWATALDGRNPSDLY-----------QLDLNAPCAW 209

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +FG E  G++ E +   +  +  P+     SLN++ A  + ++E M   I 
Sbjct: 210 VFGNEGSGVSREILEKVDGGVRIPMLGQTESLNVAMAATVCLFEQMRQRIA 260


>gi|308172881|ref|YP_003919586.1| rRNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307605745|emb|CBI42116.1| putative rRNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328552521|gb|AEB23013.1| rRNA methylase [Bacillus amyloliquefaciens TA208]
 gi|328910919|gb|AEB62515.1| putative rRNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 157

 Score = 82.0 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P++  N G +AR     + T L L+ P      +K    +       +  +V   
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L E   A  +  F + T    +   K   +   +           ++V  +FGRE  G
Sbjct: 62  DSLDELFEAYENGKFFFIT----KFGQKPHTSFDYSNTE--------EDVFFVFGRETSG 109

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 110 LPKELIENNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151


>gi|225867944|ref|YP_002743892.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701220|emb|CAW98160.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 181

 Score = 82.0 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N T L ++ P      ++    +       D   +R +
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDIRFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +A                  V++     +  ++     Q+   +FGRE  GL  
Sbjct: 76  DHLDEFLAQCD-----------GSLHVISKFADQVYSDKDYNDRQSHYFLFGREDTGLPE 124

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +   ++  +  P+N     SLN+S AV ++V+E +   
Sbjct: 125 PFMRQYADRALRIPMNDEHVRSLNVSNAVCMIVYEALRQQ 164


>gi|239502303|ref|ZP_04661613.1| rRNA methylase (SpoU class) [Acinetobacter baumannii AB900]
          Length = 157

 Score = 82.0 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++  +ADL       A+   +   +             +   + V ++ G E  GL  E 
Sbjct: 63  IELCLADLK------AKGVEHIFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + L       I  P+     SLN+S A  ++V+E     
Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|327438727|dbj|BAK15092.1| predicted rRNA methylase [Solibacillus silvestris StLB046]
          Length = 157

 Score = 82.0 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +       + V V 
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRA--GLDYWEHVNVV 59

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +L++ I            +++    ++    +     ++   S +++  +FGRE  G
Sbjct: 60  YHDSLEDFIE----------YSKDGDVYLIETYSDEPFTTHDFSNSERDLYFMFGRETTG 109

Query: 132 LTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E     ++  +  P +    SLN+S    ++++E +   
Sbjct: 110 LPKEFAKERADMCLRIPQSDHIRSLNLSNTAAIVIYEVLRQQ 151


>gi|270159513|ref|ZP_06188169.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289165686|ref|YP_003455824.1| rRNA methylase [Legionella longbeachae NSW150]
 gi|269987852|gb|EEZ94107.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288858859|emb|CBJ12781.1| putative rRNA methylase [Legionella longbeachae NSW150]
          Length = 148

 Score = 82.0 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 22/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  P++  N G + R   N    QL L++P      EKA   +       +   +  +
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFSLQEKALRRA--GLDYHEWACISQY 60

Query: 75  SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N    I       IYA +A     +  V    E                 +FG E  GL
Sbjct: 61  ENWDTFILQHQQKQIYACSASAEKCYSKVQYASEDM--------------FLFGPESNGL 106

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +    ++   P+     SLN+S AV ++++E    
Sbjct: 107 PKEIVQKFTSL-FIPMREHNRSLNLSNAVAVILYEAWRQ 144


>gi|261819493|ref|YP_003257599.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
 gi|261603506|gb|ACX85992.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
          Length = 154

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R   N   T L L+ P      EK    +       D  +V   
Sbjct: 4   IALYEPQIAPNTGNIIRLAANNGCT-LHLIEPLGFDFEEKKLRRA--GLDYHDLAKVSRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +   AI        TT  +R   +    P +                ++FG E  G
Sbjct: 61  KNYQDFLAAIPGQRIFACTTKGSRPYDQPTYQPGDV---------------LLFGSETSG 105

Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L +       S+  I  P+     SLN+S AV ++ +E    
Sbjct: 106 LPDAIRNGFESDFRIRIPMQSDSRSLNLSNAVAIISYEAWRQ 147


>gi|304317839|ref|YP_003852984.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779341|gb|ADL69900.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 156

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 28/167 (16%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              ++LV+P++ +N G +AR       ++L LV P     SEK    S           +
Sbjct: 2   PINVVLVEPEIPQNTGNIARTCVLTG-SKLHLVKPLGFSLSEKYLKRS--GLDYWPYLDL 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +V+ N++E +       +  ATT                       +    +  I+FG+E
Sbjct: 59  KVYENIEEFLESTKGSKYYLATT---------------KGKHFYHEVKYEDDSYILFGKE 103

Query: 129 RWGLTNE--EIALSNAIISFPVNP--LFPSLNISQAVLLMVWECMEN 171
             GL     E+   +  I  P+N      SLN+S +V ++V+E ++ 
Sbjct: 104 SAGLPQWLREMYE-DDCIRIPMNEVKAERSLNLSNSVAILVYEALKQ 149


>gi|169632604|ref|YP_001706340.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|184159297|ref|YP_001847636.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|260557293|ref|ZP_05829509.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|332872557|ref|ZP_08440526.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6014059]
 gi|169151396|emb|CAP00121.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183210891|gb|ACC58289.1| predicted rRNA methylase (SpoU class) [Acinetobacter baumannii
           ACICU]
 gi|193078167|gb|ABO13111.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|260409399|gb|EEX02701.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|322509208|gb|ADX04662.1| rRNA methylase [Acinetobacter baumannii 1656-2]
 gi|323519237|gb|ADX93618.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739243|gb|EGJ70101.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6014059]
          Length = 157

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++  +ADL       A+   +   +             +   + V ++ G E  GL  E 
Sbjct: 63  IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + L       I  P+     SLN+S A  ++V+E     
Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
 gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
          Length = 261

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L +  KG  ++L   Q   N+G V R+     +  + L        S K   +  
Sbjct: 103 PLGRTLPD--KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGM 160

Query: 63  NADCVIDSVRVFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  ++D   ++S  +L+  +A     ++AT  R           +E   VL      G 
Sbjct: 161 GAHFLLD---IYSQADLEIWLAHYEDRVFATALR-----------EEKQAVLYGEDLCG- 205

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               +FG E  G+    +  ++  +  P+N    SLN++ A  + ++E M     
Sbjct: 206 PTAWVFGNEGAGVGKAVLERADKCVRIPMNDATESLNVAMAATICLFEQMRQRAA 260


>gi|325123237|gb|ADY82760.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 157

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++  +ADL       A+   +   +             +   + V ++ G E  GL  E 
Sbjct: 63  IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + L       I  P+     SLN+S A  ++V+E     
Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|83590714|ref|YP_430723.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
           39073]
 gi|83573628|gb|ABC20180.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
           39073]
          Length = 155

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++ +N G +AR       T L L++P      EK    +       + V +   
Sbjct: 5   VVLYQPEIPQNTGNIARTCALTG-TFLHLIHPLGFRLDEKHLKRA--GLDYWEEVNILEH 61

Query: 75  SN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           S     +EA  D +  Y +T   R   K    P +                ++FG E  G
Sbjct: 62  STWAAFREAYPDANCYYLSTKGQRRYTKVDYRPDDF---------------LVFGPETRG 106

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +  + + ++  P+ P   SLN++ +V ++++E +  
Sbjct: 107 LPASILEPAGDRVLRVPMRPGLRSLNLANSVAIVLYEALRQ 147


>gi|154685355|ref|YP_001420516.1| hypothetical protein RBAM_009210 [Bacillus amyloliquefaciens FZB42]
 gi|154351206|gb|ABS73285.1| CspR [Bacillus amyloliquefaciens FZB42]
          Length = 157

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           ++L  P++  N G +AR     + T L L+ P      +K    +       + V+V   
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVKVVYH 61

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L+E   A  +  F + T    +   K   +   +           ++   +FGRE  G
Sbjct: 62  DSLEELFEAYENGKFFFIT----KFGQKPHTSFDYSNTE--------EDFFFVFGRETSG 109

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 110 LPKELIENNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151


>gi|291535630|emb|CBL08742.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
           M50/1]
 gi|291540875|emb|CBL13986.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
           XB6B4]
          Length = 167

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 26/173 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P      EK+   +         + V   
Sbjct: 6   IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFHLDEKSIKRA--GMDYWSELDVTTY 62

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E         ATT       + V             +    +  I+FG+E  G
Sbjct: 63  VNWDDFCEKNPGAKIYMATT-----KGRHVYT----------EVSYEPDCYIMFGKESAG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +  EEI  +  +  +  P+     SLN+S +V ++++E +  +     K   E
Sbjct: 108 IP-EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQNQFDHMKLQGE 159


>gi|254805689|ref|YP_003083910.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha14]
 gi|254669231|emb|CBA08073.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha14]
          Length = 154

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+L  P++  N G + R   N     L LV P  G+P + A+   A  D     S+ V+
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVY 60

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N  +   A+A    I+A T       K  + P E A          +   ++FG E  G
Sbjct: 61  ENFDDCLKALAG-RRIFALT------TKGTVRPDETAFQ--------KGDVLLFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 106 LPADILDSLPAAQKIRLPMQPGCRSMNLSNTVAVILFEAWRQ 147


>gi|302384793|ref|YP_003820615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
 gi|302195421|gb|ADL02992.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
          Length = 164

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L++P++  N G + R       T+L L+ P     ++K    +       D   V V+
Sbjct: 3   IVLLEPEMPANTGNIGRTCVATG-TKLHLIEPLGFKLNDKLIKRA--GLDYWDKLDVNVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+ ++ +            +RN    +       + +   +    +  ++FG+E  G+  
Sbjct: 60  SDYQDFL------------DRNPGARIYMATTKGLHVYSDVEYDPDCFLMFGKESAGIPE 107

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +    +  +  P+     SLN+S +V ++++E +  
Sbjct: 108 EILLENQDCCVRIPMWGDIRSLNLSNSVSIVLYEALRQ 145


>gi|293610921|ref|ZP_06693220.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299768963|ref|YP_003730989.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1]
 gi|292826573|gb|EFF84939.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298699051|gb|ADI89616.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1]
          Length = 157

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++  +ADL       A+   +   +             +   + V ++ G E  GL  E 
Sbjct: 63  IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + L       I  P+     SLN+S A  ++V+E     
Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|291545357|emb|CBL18465.1| Predicted rRNA methylase (SpoU class) [Ruminococcus sp. SR1/5]
          Length = 166

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R       T+L L+ P     +EKA   +       + + V   
Sbjct: 6   IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRLNEKAIKRA--GMDYWEHLDVTRY 62

Query: 77  L--KEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L  ++ +         YATT                A      +    +  I+FG+E  G
Sbjct: 63  LDYEDFLKKNPGAKIYYATT---------------KAPQTYTDVQYEDDCFIMFGKESAG 107

Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +  +    +  P+     SLN+S +V ++++E +  
Sbjct: 108 IPEDILVNNQETCVRIPMIGDIRSLNLSNSVAIVLYEALRQ 148


>gi|57237733|ref|YP_178981.1| RNA methyltransferase [Campylobacter jejuni RM1221]
 gi|148926586|ref|ZP_01810268.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356389|ref|ZP_03223154.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|57166537|gb|AAW35316.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
 gi|145845280|gb|EDK22374.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345774|gb|EDZ32412.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058344|gb|ADT72673.1| Putative RNA methyltransferase [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 155

 Score = 81.6 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L +V P     S+KA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT   +  F                    +N  + FG E 
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAEFQKNDFLFFGSES 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL   E+   N    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|126698145|ref|YP_001087042.1| putative RNA methylase [Clostridium difficile 630]
 gi|254974166|ref|ZP_05270638.1| putative RNA methylase [Clostridium difficile QCD-66c26]
 gi|255091567|ref|ZP_05321045.1| putative RNA methylase [Clostridium difficile CIP 107932]
 gi|255099672|ref|ZP_05328649.1| putative RNA methylase [Clostridium difficile QCD-63q42]
 gi|255305555|ref|ZP_05349727.1| putative RNA methylase [Clostridium difficile ATCC 43255]
 gi|255313293|ref|ZP_05354876.1| putative RNA methylase [Clostridium difficile QCD-76w55]
 gi|255515984|ref|ZP_05383660.1| putative RNA methylase [Clostridium difficile QCD-97b34]
 gi|255649075|ref|ZP_05395977.1| putative RNA methylase [Clostridium difficile QCD-37x79]
 gi|260682266|ref|YP_003213551.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260685865|ref|YP_003216998.1| putative RNA methylase [Clostridium difficile R20291]
 gi|306519189|ref|ZP_07405536.1| putative RNA methylase [Clostridium difficile QCD-32g58]
 gi|115249582|emb|CAJ67399.1| putative tRNA/rRNA methyltransferase [Clostridium difficile]
 gi|260208429|emb|CBA60985.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260211881|emb|CBE02320.1| putative RNA methylase [Clostridium difficile R20291]
          Length = 156

 Score = 81.6 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++ +N G + R       + L LV P      +K            D   +   
Sbjct: 5   IVLVEPEIPQNTGNIIRTCAATG-STLHLVKPLGFSLDDKHLKR--CGLDYWDIADIQYY 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F  L+E   +  + ++TT                A   +  +   +N  I+FG+E  G
Sbjct: 62  DSFEELQEKYPNSKYFFSTT---------------KAKQSHSDVKYEENCFIVFGKETKG 106

Query: 132 LTNEEIALSNA--IISFPVN--PLFPSLNISQAVLLMVWECMEN 171
           L  E +  +N    I  P+       SLN+S +V ++V+E +  
Sbjct: 107 LP-EPLLKANMDTCIRVPMLDVEKARSLNLSNSVAIVVYEALRQ 149


>gi|255767208|ref|NP_388774.2| rRNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|269969434|sp|O31590|TRML_BACSU RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase CspR
 gi|225184835|emb|CAB12721.2| putative rRNA methylase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 160

 Score = 81.6 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P++  N G +AR     N T L L+ P      +K    +       +  +V   
Sbjct: 8   VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E            A  +  F  +    +      +     ++   +FGRE  GL  
Sbjct: 65  DSLEELFE---------AYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 115

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 116 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 154


>gi|221308732|ref|ZP_03590579.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313055|ref|ZP_03594860.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317980|ref|ZP_03599274.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221322254|ref|ZP_03603548.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|1381681|gb|AAB02738.1| CspR [Bacillus subtilis subsp. subtilis str. JH642]
          Length = 157

 Score = 81.6 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P++  N G +AR     N T L L+ P      +K    +       +  +V   
Sbjct: 5   VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E            A  +  F  +    +      +     ++   +FGRE  GL  
Sbjct: 62  DSLEELFE---------AYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 112

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151


>gi|257413426|ref|ZP_04743012.2| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
 gi|257203592|gb|EEV01877.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
          Length = 171

 Score = 81.6 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 26/173 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P      EK+   +         + V   
Sbjct: 10  IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFHLDEKSIKRA--GMDYWSELDVTTY 66

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E         ATT       + V             +    +  I+FG+E  G
Sbjct: 67  VNWDDFCEKNPGAKIYMATT-----KGRHVYT----------EVSYEPDCYIMFGKESAG 111

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +  EEI  +  +  +  P+     SLN+S +V ++++E +  +     K   E
Sbjct: 112 IP-EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQNQFDHMKLQGE 163


>gi|86152124|ref|ZP_01070336.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124400|ref|YP_004066404.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840909|gb|EAQ58159.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018122|gb|ADT66215.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 155

 Score = 81.6 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L +V P     S+KA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT   +  F                    +N  + FG E 
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAKFQKNDFLFFGSES 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL   E+   N    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLP-VELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|315604144|ref|ZP_07879210.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313850|gb|EFU61901.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 153

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +I  +P++  N G   R       + L L+ P  G+  + A+   A  D   +  V V  
Sbjct: 4   VIFWEPEIPGNTGAAIRLSACTG-SMLHLIKPL-GFDMDDAKLRRAGLDYHDLAHVTVHE 61

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           NL EA+  +   ++A T                A  ++  +      G++FGRE  GL++
Sbjct: 62  NLDEALDQVPGRVWAFTG--------------HAHTMHSEVAYADGDGLLFGRESVGLSS 107

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +A      ++   +     SLN++ +  + ++E    
Sbjct: 108 EAMAHRRVEDLVRIHMVKGVRSLNLANSASIALYEAWRQ 146


>gi|321314617|ref|YP_004206904.1| putative rRNA methylase [Bacillus subtilis BSn5]
 gi|291483342|dbj|BAI84417.1| rRNA methylase-like protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020891|gb|ADV95877.1| putative rRNA methylase [Bacillus subtilis BSn5]
          Length = 157

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P++  N G +AR     N T L L+ P      +K    +       +  +V   
Sbjct: 5   VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E            A  +  F  +    +      +     ++   +FGRE  GL  
Sbjct: 62  DSLEELFE---------AYEKGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 112

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151


>gi|312621608|ref|YP_004023221.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312876538|ref|ZP_07736521.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796749|gb|EFR13095.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312202075|gb|ADQ45402.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 154

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              I+L +P++  N G +AR       ++L L+ P      +K    +           V
Sbjct: 2   PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +++ +L +        +  Y +T   +   +   AP E             N  ++FG+E
Sbjct: 59  KIYKDLNDFFEKNRGANIFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    I    +     P+     SLN+S +V ++++E +  
Sbjct: 104 TAGLPQWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQ 147


>gi|297624953|ref|YP_003706387.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297166133|gb|ADI15844.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 253

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 20/156 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P    N+G + R M  F +  L L+ P     +     +S  A   ++    F++L+
Sbjct: 113 LVNPSDNGNVGTIVRTMLGFGVRDLALIAPAVDLFNPHVVRASMGATFAVNFA-YFASLE 171

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                   +Y      R      L P     A  L E  F      ++FG E  GL   E
Sbjct: 172 --------VY------RAAHAHRLYPFMLGGAKRLGEVRFEAPYT-LVFGPEGAGLP--E 214

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +   +  P +PL  SLN++ AV + ++E    +
Sbjct: 215 AYRAFESVQIPQSPLVESLNLAVAVGVALYEAARET 250


>gi|296332315|ref|ZP_06874776.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305673592|ref|YP_003865264.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150233|gb|EFG91121.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411836|gb|ADM36955.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 157

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P++  N G +AR     N T L L+ P      +K    +       +  +V   
Sbjct: 5   VVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNVVYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E   +           +  F  +    +      +     ++   +FGRE  GL  
Sbjct: 62  DSLEELFEEYQ---------KGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 112

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 113 DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 151


>gi|86153504|ref|ZP_01071708.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612429|ref|YP_001000579.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005510|ref|ZP_02271268.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85843230|gb|EAQ60441.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249452|gb|EAQ72412.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 155

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L +V P     S+KA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT   +  F                    +N  + FG E 
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAKFQKNDFLFFGSES 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL   E+   N    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|153952499|ref|YP_001398024.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939945|gb|ABS44686.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 155

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L +V P     S+KA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT   +  F +                  +N  + FG E 
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSRKAYFNTEF---------------QKNDFLFFGSES 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL   E+   N    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLP-MELMQLNWKNAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|312792688|ref|YP_004025611.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179828|gb|ADQ39998.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 154

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              I+L +P++  N G +AR       ++L L+ P      +K    +           V
Sbjct: 2   PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +++ +L +        +  Y +T   +   +   AP E             N  ++FG+E
Sbjct: 59  KIYKDLNDFFEKNRGANIFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    I    +     P+     SLN+S +V ++++E +  
Sbjct: 104 TAGLPQWLIEQNIHRTYRIPMINDVRSLNLSNSVAIVLYEALRQ 147


>gi|253579603|ref|ZP_04856872.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849104|gb|EES77065.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 166

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P     SEKA   +         + V   
Sbjct: 6   IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFSLSEKALKRA--GMDYWKDLDVTTY 62

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +  E        YATT                A      +   ++  I+FG+E  G
Sbjct: 63  LDFEDFLEKNPGAKIYYATT---------------KAPQTYTDVHYEEDCYIMFGKESAG 107

Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +  +    +  P+     SLN+S +V ++++E +  
Sbjct: 108 IPEDILVNNQETCVRIPMIGDIRSLNLSNSVAIVLYEALRQ 148


>gi|210623503|ref|ZP_03293848.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
 gi|210153561|gb|EEA84567.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
          Length = 156

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV+P++  N G + R        +L LV P     ++K            D   V+++
Sbjct: 5   IVLVEPEIPHNTGNIIRTCAVTG-AKLHLVKPLGFELTDKHLKR--CGLDYWDIADVKIY 61

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N +E      D  ++  T+   R +                 +       ++FG E  G
Sbjct: 62  ENFEELEAQYPDAQYVLGTSKVKRTHT---------------DVEYKDGCFLVFGSETKG 106

Query: 132 LTNEEIAL-SNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171
           L+ E I          P+        LN+S AV +M +E +  
Sbjct: 107 LSKEIIERHIEDCARIPMLDLERARCLNLSNAVAVMTYEALRQ 149


>gi|218134808|ref|ZP_03463612.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990193|gb|EEC56204.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC
           43243]
          Length = 165

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R        +L L+ P     +EK    +       D   V V+
Sbjct: 4   IVLHEPEMPANTGNIGRTCVAAG-ARLHLIEPLGFHINEKMVKRA--GLDYWDKLDVTVY 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N ++ +          ATT        +    +              +  I+FG+E  G
Sbjct: 61  DNYEDFLEKNPGAKIYMATT----KAPHTYCDVRYE-----------DDCYIMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +    +  I  P+     SLN+S +V ++++E +  
Sbjct: 106 IPEDILVQHPDTAIRIPMIGDIRSLNLSNSVAIVLYEALRQ 146


>gi|312126860|ref|YP_003991734.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776879|gb|ADQ06365.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 154

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              I+L +P++  N G +AR       ++L L+ P      +K    +           V
Sbjct: 2   SINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +++ +L +        +  Y +T   +   +   AP E             N  ++FG+E
Sbjct: 59  KIYKDLNDFFEKNRGANIFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    I    +     P+     SLN+S +V ++++E +  
Sbjct: 104 TAGLPQWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQ 147


>gi|225023964|ref|ZP_03713156.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC
           23834]
 gi|224942989|gb|EEG24198.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC
           23834]
          Length = 179

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  P++  N G + R   N     L LV P  G+P + A+   A      +  R+   
Sbjct: 29  IVLYQPEIPPNTGNIIRLCANSG-ADLHLVKPL-GFPLDSAKMKRAG-LDYHEFARISLH 85

Query: 75  SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++ +A  +   I+A T + R          + A    + +        +FG E  GL
Sbjct: 86  ETFEDCLAALEGRRIFALTTKGRTRP-------DQAEFRPDDV-------FLFGPETRGL 131

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +     N  +  P+ P   S+N+S  V +M++E    
Sbjct: 132 PAAILERLPENQKLRLPMLPGSRSMNLSNTVAVMLYEAWRQ 172


>gi|323126650|gb|ADX23947.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 181

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N   L ++ P      ++    +       D   VR +
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +A                  +++     I   E     Q    +FGRE  GL  
Sbjct: 76  DSLEDFVAQCQ-----------GKLHLISKFADKIYSEETYADDQPHYFLFGREDTGLPE 124

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +   +   +  P+N     SLN+S  V ++V+E +   
Sbjct: 125 AFMREHAEKALRIPMNDDHVRSLNVSNTVCMVVYEALRQQ 164


>gi|222152587|ref|YP_002561762.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113398|emb|CAR41054.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
          Length = 181

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L +PQ+ +N G +AR     N   L ++ P      ++    +       D   VR +
Sbjct: 19  VVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRA--GLDYWDKLDVRFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +                   +++     +  +ER   G+N   +FGRE  GL  
Sbjct: 76  DSLDDFVEKCD-----------GKLHLISKFAETVYSDERFDDGENHYYLFGREDKGLP- 123

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E     +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 124 ETFMRKHPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQ 164


>gi|187927322|ref|YP_001897809.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|309779977|ref|ZP_07674731.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
           5_7_47FAA]
 gi|187724212|gb|ACD25377.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
           12J]
 gi|308921336|gb|EFP66979.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
           5_7_47FAA]
          Length = 156

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +ILV+P++  N G V R   N    QL L+ P  G+P E AR   A      +    RV 
Sbjct: 4   VILVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAG-LDYHEYATMRVH 60

Query: 75  SN----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRER 129
           ++    L++A  D   ++A T R    F SV   P +                 +FG E 
Sbjct: 61  ADWDAFLRDAQPDPTRMFALTTRGSTPFASVAFQPGDW---------------FVFGSET 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL+ E  E   ++  I  P+ P   SLN+S  V ++V+E    
Sbjct: 106 RGLSEERREWFPASQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           papyrosolvens DSM 2782]
          Length = 164

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV+P++ +N G + R       T L LV P      +K    +       D    R +
Sbjct: 5   IVLVEPEIPQNTGNIVRTCAATG-TVLHLVGPLGFSIEDKYLKRA--GLDYWDEADVRYY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +N+ E         F Y+TT       K+V    +             +  I+FG+E  G
Sbjct: 62  NNINEFFEKFPGKTFYYSTT-------KAVNNYCDVQFE--------DDSFILFGKETAG 106

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  EE+   N    I  P+     SLN+S +V ++++E +   
Sbjct: 107 LP-EELLRDNKEYCIRIPMKKGIRSLNLSNSVAIVLYEALRQQ 148


>gi|227496022|ref|ZP_03926333.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM
           15434]
 gi|226834415|gb|EEH66798.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM
           15434]
          Length = 155

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 21/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +I  +P++  N G   R   N   + L LV+P   +  + A+   A  D   + + RV +
Sbjct: 7   VIFFEPRIPGNSGAAIRLSANTG-SMLHLVDP--LFDMDDAKLRRAGLDYHDLANTRVHA 63

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + +E +  +   I+A TA                  L   +    +  ++FG E  GL  
Sbjct: 64  SWQECLEQVPGRIFAFTA--------------HTSQLYTEVEWRGDDALLFGPEPTGLPE 109

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E +     +  +  P+     SLN++ +  + ++E   
Sbjct: 110 EIMEDPRVSGRVRIPMMEGNRSLNLANSAAVGLYEAWR 147


>gi|304310379|ref|YP_003809977.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1]
 gi|301796112|emb|CBL44317.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1]
          Length = 155

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N    QL L+ P      +K    +         V++  +
Sbjct: 5   IVLYQPEIPPNTGNIIRLCANSG-AQLHLIKPLGFVLDDKRLRRAGLDYHEWARVQIHES 63

Query: 77  LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             E +        F  +T      +                         +I G E  GL
Sbjct: 64  FTEFLENGKVGRCFAVSTKGAVGYHTPHYQD----------------GDALILGPETRGL 107

Query: 133 TNEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             EEI      +A I  P+     SLN+S A  +M++E    
Sbjct: 108 P-EEIRKHPRVSACIRIPMMENSRSLNLSNAAAIMLYEAWRQ 148


>gi|251781836|ref|YP_002996138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390465|dbj|BAH80924.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 198

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N   L ++ P      ++    +       D   VR +
Sbjct: 36  VVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 92

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +A                  +++     I   E     Q    +FGRE  GL  
Sbjct: 93  DSLEDFVAQCQ-----------GKLHLISKFADKIYSEETYADDQPHYFLFGREDTGLPE 141

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +   +   +  P+N     SLN+S  V ++V+E +   
Sbjct: 142 AFMREHAEKALRIPMNDDHVRSLNVSNTVCMVVYEALRQQ 181


>gi|87303673|ref|ZP_01086448.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
 gi|87281778|gb|EAQ73743.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
          Length = 161

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 21/165 (12%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           P ++L  PQ+  N G VAR        +L L+ P      E+    +         V   
Sbjct: 5   PRVVLFQPQIPPNTGNVARTCAATG-AELHLIEPLGFSLDERQLKRA--GLDYWPWVPLH 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V    +          A +A  R     +LA    A    +      +  ++FGRE  GL
Sbjct: 62  VHPGFE----------ALSAEQRRRGGRLLALSSQADQPYQHCRFCSDDWLLFGRESDGL 111

Query: 133 TNEEIALSNAIISFPV------NPLFPSLNISQAVLLMVWECMEN 171
             E +  ++  ++ P+           SLN+S +V ++++E +  
Sbjct: 112 PPELLEQADMRLTIPMPGSVRHGGGVRSLNLSVSVAVVLFEALRQ 156


>gi|332285809|ref|YP_004417720.1| RNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330429762|gb|AEC21096.1| RNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 166

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 25/169 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P++  N G V R   N   + L LV P      +K    +        +++V ++
Sbjct: 14  IVLVSPEIPPNTGNVIRLAANTGAS-LHLVRPLGFELDDKKLKRAGLDYHEWAAMQVHND 72

Query: 77  LKEAIA----DLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L  A+     D    YA TT  +R              ++ E  F   +V  +FGRE  G
Sbjct: 73  LDAALNIIGGDPSRRYALTTKGSR--------------LMAEFSFKPGDV-FVFGRETAG 117

Query: 132 LTNEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L+  ++A    +  +   P+ P   SLN+S AV + V+E    +  +  
Sbjct: 118 LSPGQLACFPQAQRL-RLPMMPQQRSLNLSNAVAVTVFEAWRQAGYAGG 165


>gi|297543786|ref|YP_003676088.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841561|gb|ADH60077.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 156

 Score = 81.3 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++ +N G +AR       ++L LV P      EK    +      +  + V+ N
Sbjct: 5   VVLVEPEIPQNTGNIARTCVLTG-SRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVYDN 63

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+  +       F  ATT   +                   +    N  I+FG+E  GL 
Sbjct: 64  LERFLEQNKGKKFYLATTKAKKYYH---------------EVKYEDNSYILFGKETAGLP 108

Query: 134 NEEIAL----SNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171
              I          I  P++ +    SLN+S +V ++++E +  
Sbjct: 109 KWLIEKYYEDC---IRIPMHEVISTRSLNLSNSVAIVLYEALRQ 149


>gi|194363941|ref|YP_002026551.1| tRNA/rRNA methyltransferase SpoU [Stenotrophomonas maltophilia
           R551-3]
 gi|194346745|gb|ACF49868.1| tRNA/rRNA methyltransferase (SpoU) [Stenotrophomonas maltophilia
           R551-3]
          Length = 159

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 15/171 (8%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N+A    +IL  P++  N G V R   N    QL LV P      +K    +        
Sbjct: 2   NAAPQFHVILFQPEIPPNTGNVIRLCANTG-AQLHLVEPLGFALEDKQLKRAGLDYHEYS 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            ++V  +L  A+A            R   K + A    A V  + +        +FG E 
Sbjct: 61  RLQVHPDLDTALA------------RIAPKRLFALSTRASVRYDSVAFDDGDAFLFGPES 108

Query: 130 WGLTNEEI-ALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            GL  + + AL +   +  P+ P   SLN+S  V ++++E       +  +
Sbjct: 109 RGLPQDVLDALPDGHRLRLPMRPDNRSLNLSNTVAVVMYEAWRQHGFAGGQ 159


>gi|218439056|ref|YP_002377385.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
 gi|218171784|gb|ACK70517.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
          Length = 153

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 12/158 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV PQ+  N G +AR       T+L LV P     S++    +      + ++   
Sbjct: 2   IRLVLVHPQIPPNTGNIARTCAATA-TELHLVGPLGFEISDRYLKRAGLDYWPLVNLSYH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL E    +H         R    SV   +       E         ++FG E  GL  
Sbjct: 61  PNL-EIFEQVHQKIG----GRKIGFSVSGQENFLKFQFEVGDW-----LLFGSETDGLPA 110

Query: 135 EEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
             +A  +A +  P+  P   SLN+S +V + ++E    
Sbjct: 111 NVLASCDATVYIPMAQPKVRSLNLSVSVAVGLFEAKRQ 148


>gi|238917775|ref|YP_002931292.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
           ATCC 27750]
 gi|238873135|gb|ACR72845.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
           ATCC 27750]
          Length = 165

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++  N G + R        +L L+ P     ++K    +       D + V  +
Sbjct: 4   IVLHEPEMPANTGNIGRTCVATG-ARLHLIGPLGFKINDKMLKRA--GLDYWDKLDVTEY 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  + +A         ATT                A      +   ++  I+FG+E  G
Sbjct: 61  DDYNDFLAKNPGAKVYMATT---------------KAHKTYTEVNYEEDCYIMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +    +  I  P+     SLN+S +V ++++E +  
Sbjct: 106 IPEEILVDNEDTCIRIPMIGDIRSLNLSNSVAIVLYEALRQ 146


>gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
 gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
          Length = 178

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   N+G V R+   F +  + L       P+ +   ++ 
Sbjct: 13  SVEEFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             +  +D  + F+  +EA+    AD +F+Y           S+   + +  +       G
Sbjct: 73  GGEDSVDW-KYFATTEEAVNQLKADGYFVY-----------SIEQVEGSTKLQRLETGQG 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           Q   ++FG E  G++   + L +  +  P      SLN+S    +++WE ++
Sbjct: 121 QRYAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172


>gi|332531748|ref|ZP_08407633.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038724|gb|EGI75166.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 154

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 19/166 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N     L L+ P      +K    +         V+  ++
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYA-LHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ +       +YA T +                  +          ++FG E  GL +
Sbjct: 63  FEDYLEKCKPKKVYACTTK--------------GSQFHHEASYEAGDCLVFGPETRGLPD 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E I     +  +  P+     S+N+S AV + V+E        + +
Sbjct: 109 EMIQALPNDQRVRIPMQANSRSMNLSNAVAVFVYESWRQLGFPNAQ 154


>gi|160937817|ref|ZP_02085176.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439256|gb|EDP17009.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC
           BAA-613]
          Length = 168

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 16/158 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L++P++  N G + R       T+L L+ P     +EKA   +       D   V V+
Sbjct: 4   IVLLEPEMPSNTGNIGRTCVAT-QTRLHLIEPLGFKLNEKALKRA--GLDYWDKLDVTVY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+ K+ +           RN     ++      A  +   +  G +  ++FGRE  G+  
Sbjct: 61  SDYKDFLE----------RNPQASGNMYFATTKARKVYSDVTYGPDCYLMFGRESAGIPE 110

Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +  + +  I  P+     SLN+S +  ++++E +  
Sbjct: 111 EILVHNEDHCIRIPMWGDIRSLNLSNSAAIVLYEALRQ 148


>gi|302872532|ref|YP_003841168.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575391|gb|ADL43182.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 154

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              I+L +P++  N G +AR       ++L L+ P      +K    +           V
Sbjct: 2   PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +++ +L +        +  Y +T   +   +   AP E             N  ++FG+E
Sbjct: 59  KIYRDLNDFFEKNRGANIFYFSTKGKQYYTQ---APYED------------NCYLMFGKE 103

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    I    +     P+     SLN+S +V ++++E +  
Sbjct: 104 TAGLPKWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEVLRQ 147


>gi|86150167|ref|ZP_01068394.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597538|ref|ZP_01100772.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562524|ref|YP_002344303.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839283|gb|EAQ56545.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190130|gb|EAQ94105.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360230|emb|CAL35025.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926138|gb|ADC28490.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927546|gb|EFV06879.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 155

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L +V P     S+KA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIVKPIVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT   +  F                    +N  + FG E 
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAEFQKNDFLFFGSES 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL   E+   N    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|220929686|ref|YP_002506595.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
 gi|220000014|gb|ACL76615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
          Length = 164

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV+P++ +N G + R       + L LV P      +K    +       +    R +
Sbjct: 5   IVLVEPEIPQNTGNIVRTCAATG-SVLHLVGPLGFSIEDKYLKRA--GLDYWNEADVRYY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +NL E         F Y+TT   +          E             +  I+FG+E  G
Sbjct: 62  NNLDEFKKKNVGKTFYYSTT---KAVNNYCNVNFED------------DCFIVFGKETAG 106

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  EE+   N    I  P+     SLN+S +  ++++E +   
Sbjct: 107 LP-EELLKGNKEYCIRIPMKNGIRSLNLSNSAAIVLYEALRQQ 148


>gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17]
 gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17]
          Length = 178

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   N+G V R+   F +  + L       P+ +   ++ 
Sbjct: 13  SVEEFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             +  +D  + F+  +EA+    AD +F+Y           S+   + +  +       G
Sbjct: 73  GGEDSVDW-KYFATTEEAVNQLKADGYFVY-----------SIEQVEGSTKLQRLETEQG 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           Q   ++FG E  G++   + L +  +  P      SLN+S    +++WE ++
Sbjct: 121 QRYAVVFGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWEFLK 172


>gi|167771109|ref|ZP_02443162.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
           17241]
 gi|167666779|gb|EDS10909.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
           17241]
          Length = 171

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++PQ+ +N G +AR        +L LV P     ++     +      +  +  + +
Sbjct: 6   IVLIEPQIPQNTGNIARTCAATG-ARLHLVGPMGFEITDAKLKRAGLDYWHLLDITTYPD 64

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                A     F + TT   R   +              +   G    I+FGRE  GL  
Sbjct: 65  SASFFAQNRGPFYFFTTKARRTYTEP-------------QYPDGAY--IVFGREDAGLPE 109

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E +    +  +  P+     SLN+S  V + V+E +   
Sbjct: 110 ELLFQNPDCCVRLPMIAGARSLNLSNTVAVAVYEVLRQW 148


>gi|153815564|ref|ZP_01968232.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756]
 gi|317502183|ref|ZP_07960357.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088748|ref|ZP_08337658.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847206|gb|EDK24124.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756]
 gi|316896392|gb|EFV18489.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407271|gb|EGG86774.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 167

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P     SEKA   +       + + V   
Sbjct: 4   IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFKLSEKALKRA--GMDYWNDLDVTTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +++  E         ATT                A  +        +  I+FG+E  G
Sbjct: 61  IDYADFLEKNPGAKIYMATT---------------KAKKVYTEAAYEPDCYIMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +    +  +  P+     SLN+  +V ++++E +  
Sbjct: 106 IPEEILVDHEDTCVRIPMMGQIRSLNLGNSVAVVLYEALRQ 146


>gi|90020777|ref|YP_526604.1| putative tRNA/rRNA methyltransferase [Saccharophagus degradans
           2-40]
 gi|89950377|gb|ABD80392.1| RNA methyltransferase TrmH, group 2 [Saccharophagus degradans 2-40]
          Length = 177

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 64/177 (36%), Gaps = 15/177 (8%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A   QN      I+L +P++  N G + R   N    +L L+ P      +K    +  
Sbjct: 14  AAKPQQNRLNMFNIVLFEPEIPPNTGNIIRVCANTGC-RLHLIEPLGFELDDKRLRRAGL 72

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                 SV   +N    I             +   + + A        +  +  G+   +
Sbjct: 73  DYGEWQSVVTHANWDAFIK------------QQAPERLWALSTKGTKFHHEVSIGEGDYL 120

Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +FG E  GL  E +     + ++  P+ P   S+N+S A  +MV+E       +  K
Sbjct: 121 VFGPETRGLPMEILEYITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQLGFAGSK 177


>gi|289664985|ref|ZP_06486566.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669885|ref|ZP_06490960.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 158

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +    +V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLKVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L  A+A +    ++A + R+          +      ++          +FG E  GL
Sbjct: 65  ADLPSALAAIAPKRVFALSTRS--------TVRYDTPQFSD------GDAFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +        +  P+ P   SLN+S  V +MV+E       +  +
Sbjct: 111 PTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158


>gi|196019818|ref|XP_002119047.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
 gi|190577173|gb|EDV18467.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
          Length = 289

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           +P   + +++A    I+L +PQ+ +N G + R        +L LV P     S++    +
Sbjct: 124 SPEKTE-KSTAAPMKIVLYNPQIPQNTGNIIRTCSVTG-AELILVKPLGFELSDRKLKRA 181

Query: 62  ANADCVIDSVR--VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                  D V+  V  +L+E + +       +++              A   +      +
Sbjct: 182 --GLDYWDEVKISVVDSLEEILEENDDFCFFSSK--------------ATQWHTDRTYSK 225

Query: 120 NVGIIFGRERWGLTNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           N  +IFG E  GL  E +      +I  P+      LN+S AV + ++E    
Sbjct: 226 NSILIFGSETSGLPIEVMRKYQEKLIKIPMLAKQRCLNLSNAVSIGIYEAWRQ 278


>gi|284053209|ref|ZP_06383419.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
           Paraca]
 gi|291570564|dbj|BAI92836.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 153

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 26/165 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           P ++LV+PQ+ +N G +AR       T L LV P     S++    +         V  +
Sbjct: 2   PQLVLVNPQIPQNTGNIARTCAAT-QTPLHLVGPLGFEISDRYLKRA--GLDYWPYVPLK 58

Query: 73  VFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             +++++  A        ++   +AR + N+  V  P +    L            +FG 
Sbjct: 59  YHTHIEDFRAFHQPLGGRWV-GFSARGKQNY--VSFPFQENDWL------------LFGS 103

Query: 128 ERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
           E  GL  E +AL  A +  P++ P   SLN+S +  + ++E    
Sbjct: 104 ETEGLPPEVLALCQATVYIPMSQPNVRSLNLSVSAAVGLFEARRQ 148


>gi|295697073|ref|YP_003590311.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM
           2912]
 gi|295412675|gb|ADG07167.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM
           2912]
          Length = 157

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++  N G VAR       T L LV P      ++    +         V     
Sbjct: 8   VVLVEPEIPPNTGNVARTCAATG-TVLHLVRPLGFEVDDRHLRRAGLDYWHWVHVEYHDR 66

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++ +    +  F Y +T   R   +    P +                ++FG+E  GL 
Sbjct: 67  FEDLLEEHPEGRFFYFSTKGKRQYAEVRYRPGDF---------------LVFGKETRGLP 111

Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +       +  P+ P   SLN+S +V L ++E +  
Sbjct: 112 DALLERFPEQTLRIPMRPDIRSLNLSNSVALALFEALRQ 150


>gi|303247228|ref|ZP_07333502.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans
           JJ]
 gi|302491387|gb|EFL51275.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans
           JJ]
          Length = 156

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 19/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++L +P++ +N G VAR       T L L+ P      ++    +         V   V+
Sbjct: 4   VVLYEPEIPQNTGSVARLCAA-AKTPLHLIKPLGFSLEDRYLKRA--GLDYWPYVDLTVW 60

Query: 75  SNLKEAIA--DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               + +A    + + ATTA NR +                  +    N  +IFG E  G
Sbjct: 61  DRFDDYLAARPRNRLVATTAGNRGHTAVPYHT-----------LAYTPNDSLIFGTESRG 109

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +  ++  +  P+     SLN++ A  ++++E + +
Sbjct: 110 LPESLLDAASIRLRIPIWGHVRSLNLANAASIVLYEALRS 149


>gi|294084744|ref|YP_003551502.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664317|gb|ADE39418.1| RNA methyltransferase, TrmH family, group 2 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 163

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 17/170 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           IIL  PQ+  N G + R   N    +L LV P      EK+   +       +  RV   
Sbjct: 4   IILFTPQIPPNTGNIIRLCANTG-ARLHLVKPLGFSLDEKSCRRA--GLDYHEMARVQQH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL   +     +   +     N + + A  +    +            +FG E  GL  
Sbjct: 61  DNLDACLD----VLGMSI----NTQRLFAITKFGTQIVHDTTFVAGDVFLFGAETTGLP- 111

Query: 135 EEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           + I  +   +  +S P+ P   SLN+S AV + ++E    +   + +  +
Sbjct: 112 DSIHAALGDHQKLSLPMLPANRSLNLSNAVSVTLYEAWRQTGFQTPEAQE 161


>gi|50123235|ref|YP_052402.1| putative RNA-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613761|emb|CAG77212.1| putative RNA-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 154

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R + N     L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPQIAPNTGNIIRLVANNGCM-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +   A+        TT  +R   +    P +                ++FG E  G
Sbjct: 61  KNYQDFLAAVPGKRIFACTTKGSRPYDQPTYQPGDV---------------LLFGSETSG 105

Query: 132 LTNEEI---ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +EI     S+  I  P+     SLN+S AV ++ +E    
Sbjct: 106 LP-DEIRNGFESDFRIRIPMQSDSRSLNLSNAVAIISYEAWRQ 147


>gi|253995943|ref|YP_003048007.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253982622|gb|ACT47480.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera mobilis
           JLW8]
          Length = 154

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L +P++  N G + R   N    QL LV P      +K    +       +    +V 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTG-AQLHLVKPLGFSLEDKQLKRA--GLDYHEYANLKVH 60

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N ++   A+A  H ++A T +       +                      +FG E  G
Sbjct: 61  ENWEDCKAALAG-HRLFAITTKGSTTHSHIQF--------------KAGDAFVFGPETRG 105

Query: 132 LTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+ EE+     +   +  P+ P   SLN+S +  ++++E    
Sbjct: 106 LS-EEVRNEFTAEHRVRLPMLPNSRSLNLSNSAAILLYEAWRQ 147


>gi|312135814|ref|YP_004003152.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           owensensis OL]
 gi|311775865|gb|ADQ05352.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           owensensis OL]
          Length = 154

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              I+L +P++  N G +AR       ++L L+ P      +K    +           V
Sbjct: 2   PINIVLHEPEIPYNTGNIARTCACTG-SKLHLIEPLGFSLEDKYLKRA--GLDYWQYLDV 58

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +++ +L +        +  Y +T   +   +   AP E             N  ++FG+E
Sbjct: 59  KIYRDLNDFFEKNRGANIFYYSTKGKQYYTQ---APYED------------NCYLMFGKE 103

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    I    +     P+     SLN+S +V ++++E +  
Sbjct: 104 TAGLPRWLIEQNIHRTYRIPMISDVRSLNLSNSVAIVLYEALRQ 147


>gi|262281254|ref|ZP_06059036.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262257485|gb|EEY76221.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 157

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++  +ADL       A+   +   +             +   + V ++ G E  GL  E 
Sbjct: 63  IELCLADLK------AKGVEHVFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-ER 112

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + L       I  P+     SLN+S A  ++V+E     
Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|225574098|ref|ZP_03782709.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038698|gb|EEG48944.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM
           10507]
          Length = 166

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P     +EKA   +         + V   
Sbjct: 6   IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRLNEKAIKRA--GMDYWKDLDVTTY 62

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +++  E        YATT           AP+    V  E     ++  I+FG+E  G
Sbjct: 63  LDYNDFLEKNPGAKIYYATTK----------APQRYTDVRFE-----EDCYIMFGKESAG 107

Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +  E +  + A  I  P+     SLN+S +V ++++E +        ++   
Sbjct: 108 IPEEILLENQATAIRIPMIGDIRSLNLSNSVAIVLYEALRQHQFDHMQSEGH 159


>gi|160893756|ref|ZP_02074540.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
 gi|156864741|gb|EDO58172.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
          Length = 163

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 24/172 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R        +L L+ P     +EK    +       D   V ++
Sbjct: 4   IVLHEPEMPANTGNIGRTCVAAG-ARLHLIEPLGFQINEKQLKRA--GLDYWDKLDVTIY 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  + +          ATT   +                   +   ++  I+FG+E  G
Sbjct: 61  DDFNDFLKKNPGAKIYMATTKSKQKYT---------------DVNYEEDAYIMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +  E +       +  P+ P   SLN++ +V ++++E +        +   +
Sbjct: 106 IPEEILLDYKETAVRIPMFPEIRSLNLANSVAIVLYEALRQQGFPELETKGQ 157


>gi|255083500|ref|XP_002504736.1| predicted protein [Micromonas sp. RCC299]
 gi|226520004|gb|ACO65994.1| predicted protein [Micromonas sp. RCC299]
          Length = 369

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
                + +   +++V  +   NIG +ARA  +F    LRLV PR    S  + SS+  A 
Sbjct: 74  RDPPAALEDVCVVVVGSKKAGNIGAIARAAASFECEDLRLVAPRVDPTSRSSLSSAKGAQ 133

Query: 66  CVIDSVRVFSNLKEAIADLHFIYA 89
            V+     + ++ EAIAD     A
Sbjct: 134 HVVHGAGEYLSVAEAIADCDAAVA 157



 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + ++FGRE  GLT+EE+ L +A    P   L  SL++S A ++++ +  ++   ++  
Sbjct: 283 GKLALVFGREVDGLTDEEVNLCDAACRIPTGRLIESLSVSHAAVIILSQYYQHRASAAGH 342

Query: 179 NVKEQNTP 186
             +    P
Sbjct: 343 APRLSELP 350


>gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
 gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
          Length = 221

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             V++L + +   NIG V R    F +  + L       P  +   ++  A+  +D  + 
Sbjct: 67  PLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAEYTVDW-KY 125

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIFS-GQNVGIIFGRERW 130
           F + ++A+ +LH          N+  +VLA ++ A   +L+E +   G+   I+ G E  
Sbjct: 126 FKHTQDAVNELH----------NDGYTVLAIEQCAGSTLLDELVLEKGRKYAIVLGNEVK 175

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G+  E + + +  I  P      SLN+S    +M+WE
Sbjct: 176 GVQQEVVDMCDGCIEIPQFGTKHSLNVSVTAGIMIWE 212


>gi|313471789|sp|Q21LN7|TRML_SACD2 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 154

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 15/164 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L L+ P      +K    +        SV   +N
Sbjct: 4   IVLFEPEIPPNTGNIIRVCANTGC-RLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHAN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               I             +   + + A        +  +  G+   ++FG E  GL  E 
Sbjct: 63  WDAFIK------------QQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +     + ++  P+ P   S+N+S A  +MV+E       +  K
Sbjct: 111 LEYITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQLGFAGSK 154


>gi|168333560|ref|ZP_02691825.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 162

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L++P++  N G +AR         L L+ P      EK    +       D  +++ +
Sbjct: 3   IVLLEPEIPHNTGAIARTCAATGAA-LHLIEPLGFKLDEKHVRRA--GLDYWDKLNIKRY 59

Query: 75  SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N  E +   D   IY  T + +  +  VL                 +  I+FG+E  G+
Sbjct: 60  CNFAEFLVQNDFPKIYMATTKAKQKYSDVLY--------------EADAWIMFGKESGGI 105

Query: 133 TNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
             EEI   +    I  P+     SLN++ +V ++++E +  
Sbjct: 106 P-EEILRDHKETAIRVPMLKDIRSLNLANSVAVILYEALRQ 145


>gi|315127782|ref|YP_004069785.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315016296|gb|ADT69634.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 154

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N   + L L+ P      +K    +         V+  ++
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHAS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +       +YA T +                  + +        ++FG E  GL +
Sbjct: 63  FDAYLEKCQPKKVYACTTK--------------GSQFHHQAQYEAGDCLVFGPETRGLPD 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + I        +  P+     S+N+S AV + V+E    
Sbjct: 109 DMIQALPNEQRVRIPMQADSRSMNLSNAVAVFVYESWRQ 147


>gi|288905984|ref|YP_003431206.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           UCN34]
 gi|288732710|emb|CBI14284.1| putative RNA methyltransferase, TrmH family [Streptococcus
           gallolyticus UCN34]
          Length = 181

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       D   V  +
Sbjct: 19  IVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRA--GLDYWDKLDVTFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +                   +++     +  +E    G++   +FGRE  GL  
Sbjct: 76  DSLDEFMEKCD-----------GEVHLISKFANKVYSDENYNDGKHHYFLFGREDKGLP- 123

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175
           EE   +N    +  P+N     SLN+S  V ++V+E +      
Sbjct: 124 EEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 167


>gi|161870795|ref|YP_001599968.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
 gi|161596348|gb|ABX74008.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
          Length = 157

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+L  P++  N G + R   N     L LV P  G+P + A+   A  D     S+ V+
Sbjct: 6   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVY 63

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N  +   A+A    I+A T   +   +      +   VL            +FG E  G
Sbjct: 64  ENFDDCLKALAG-RRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRG 108

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 109 LPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 150


>gi|308047804|ref|YP_003911370.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799]
 gi|307629994|gb|ADN74296.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799]
          Length = 154

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 33/166 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N    +L L+ P      EK    +      +D   +   
Sbjct: 4   IALYEPEIAPNTGAIIRLCANNGC-RLHLIEPLGFDMDEKKLRRAG-----LDYAELTTV 57

Query: 74  -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                +++  EA+A    ++A T       +    P+  A  +           ++FG E
Sbjct: 58  TRYPDYASFLEAMAG-RRVFALTT---KGSRPHTEPQYQAGDV-----------LLFGPE 102

Query: 129 RWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL     E I  S  I   P+     SLN++ AV ++ +E    
Sbjct: 103 SRGLPEAVREAIPTSQRI-RIPMKADARSLNLANAVSIVSYEAWRQ 147


>gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
           20476]
 gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
           20476]
          Length = 256

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 11/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N+    VI+L       N+G +AR+      + L + N R    +     SSA A   +
Sbjct: 95  ENNNAALVIVLDHITDAGNLGAIARSAEVVGASGLIIPNKRSAQVTAATYKSSAGAINHL 154

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +V +NL  A+           R +     V    E A            + ++ G E
Sbjct: 155 PVAQV-ANLTGALD----------RLKKAGFWVAGASEHAQHTVWEAPLYGKIALVMGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + G++   +   + ++  P   +  SLN++QA   +++E +  
Sbjct: 204 QEGISRLTLESCDFLVKLPQAGMVGSLNVAQASTAVMYEWLRQ 246


>gi|241661853|ref|YP_002980213.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|240863880|gb|ACS61541.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
           12D]
          Length = 156

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F S+   P +                 +FG E  
Sbjct: 62  DWDAFLRDAQPDPARMFALTTRGSTPFASMAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+ E  E   +   I  P+ P   SLN+S  V ++V+E    
Sbjct: 107 GLSEERREWFPATQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|328950187|ref|YP_004367522.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450511|gb|AEB11412.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 159

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 25/171 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++L  P++ +N+G +AR        +L LV P      +     +         VR  
Sbjct: 8   VRVVLYQPEIPQNVGNIARTCAAVG-AELHLVRPFGFRWGDPRMKRA--GLDYWPHVRYV 64

Query: 75  --SN---LKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                    E +     ++A TT   R   +    P +                ++FG E
Sbjct: 65  LHDTWAAFLETLGPQDRLFAFTTKGERRYTEVAYRPGDY---------------LLFGPE 109

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             GL  E + +   ++  P+     SLN+S AV + V+E +  +  ++   
Sbjct: 110 TRGLPPEILEVWPRLV-IPMPGPVRSLNLSVAVGVAVYEALRQAGFAAPGE 159


>gi|262371910|ref|ZP_06065189.1| rRNA methylase [Acinetobacter junii SH205]
 gi|262311935|gb|EEY93020.1| rRNA methylase [Acinetobacter junii SH205]
          Length = 157

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 28/166 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L +P++  N G + R   N    QL LV P      +K    +       +  R  ++
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRA--GLDYHEWARMLIW 60

Query: 75  SNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            N++  +AD     +  ++  T +      +V   +               V ++ G E 
Sbjct: 61  DNIELCLADLKSKGVEHVFPLTTKGSATPHTVDLNR--------------PVALLMGPET 106

Query: 130 WGLTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL  E + +       I  P+     SLN+S A  ++V+E     
Sbjct: 107 RGLP-EHVRMMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|238925347|ref|YP_002938864.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale
           ATCC 33656]
 gi|238877023|gb|ACR76730.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale
           ATCC 33656]
 gi|291524331|emb|CBK89918.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale DSM
           17629]
 gi|291527619|emb|CBK93205.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale M104/1]
          Length = 167

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 37/189 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P     SEKA   +         + V   
Sbjct: 6   IVLHEPEIPANTGNIGRTCVATG-TRLHLIEPLGFSLSEKALKRA--GMDYWKDLDVTTY 62

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E        YATT        +   P                  I+FG+E  G
Sbjct: 63  VDWEDFLERNPGAKIYYATTKGRHVYSDAHFEPDCY---------------IMFGKESAG 107

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
           +  E +    +  I  P+     SLN+S +V ++++E +  +                  
Sbjct: 108 IPEEILKEHPDECIRIPMIGETRSLNLSNSVAIVLYEALRQNNF-------------DHM 154

Query: 191 ELLSFLDYL 199
            L   L +L
Sbjct: 155 RLEGELHHL 163


>gi|327462030|gb|EGF08359.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1057]
          Length = 184

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 79  DSLEDFMEQMD------GRLYLISK-----FAEKVYSEENFAAESSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 127 EEFMRCHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|291521666|emb|CBK79959.1| Predicted rRNA methylase (SpoU class) [Coprococcus catus GD/7]
          Length = 169

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 66/167 (39%), Gaps = 24/167 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L++P++  N G + R       T+L L+ P     ++K    +   D     +  V+ 
Sbjct: 5   IVLLEPEMPANTGNIGRTCVATG-TKLHLIKPLGFEITDKMVKRA-GLDYWPHLNYEVYE 62

Query: 76  NLKEAIA---DL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           N ++ +    D       ATT                A  +   +    +  ++FG+E  
Sbjct: 63  NFEDFLEKNPDCIGKLYMATT---------------KARHIYTEVAYEPDSYLMFGKESA 107

Query: 131 GLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G+  E +    +  +  P+     SLN+S +V ++++E +     + 
Sbjct: 108 GIPEEILVKYEDYCMRIPMEYNIRSLNLSNSVAIVLYEALRQHQFAQ 154


>gi|121634138|ref|YP_974383.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18]
 gi|218768949|ref|YP_002343461.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491]
 gi|304389096|ref|ZP_07371140.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|120865844|emb|CAM09576.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18]
 gi|121052957|emb|CAM09311.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491]
 gi|254674132|emb|CBA09916.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha275]
 gi|261391799|emb|CAX49254.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
 gi|304336969|gb|EFM03159.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|319411247|emb|CBY91654.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
           2594]
 gi|325131588|gb|EGC54295.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M6190]
 gi|325139157|gb|EGC61703.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           ES14902]
 gi|325143107|gb|EGC65454.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           961-5945]
 gi|325197552|gb|ADY93008.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           G2136]
 gi|325203383|gb|ADY98836.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240355]
          Length = 154

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+L  P++  N G + R   N     L LV P  G+P + A+   A  D     S+ V+
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVY 60

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N  +   A+A    I+A T   +   +      +   VL            +FG E  G
Sbjct: 61  ENFDDCLKALAG-RRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 106 LPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147


>gi|83644213|ref|YP_432648.1| rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396]
 gi|83632256|gb|ABC28223.1| predicted rRNA methylase (SpoU class) [Hahella chejuensis KCTC
           2396]
          Length = 154

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L  P++  N G + R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   IVLFQPEIPPNTGNIIRLCANCGFT-LHLIEPLGFTWDDKRLQRA--GLDYHEYAPVKRH 60

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + ++ + ++  + +YA + R ++ +  V               +G    ++FG E  GL
Sbjct: 61  GDFQQFLDEVRPNKVYALSTRGKSYYHEV------------SFAAGD--ALVFGPETRGL 106

Query: 133 TN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                +E+  S + +  P+     SLN+S  V L+ +E    
Sbjct: 107 PQQMLDELG-SESCLRVPMRQDSRSLNLSNTVALVSYEAWRQ 147


>gi|306832003|ref|ZP_07465158.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978951|ref|YP_004288667.1| TrmH family RNA methyltransferase, group 2 [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304425929|gb|EFM29046.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178879|emb|CBZ48923.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 181

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       D   V  +
Sbjct: 19  IVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRA--GLDYWDKLDVTFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +                   +++     +  +E    G++   +FGRE  GL  
Sbjct: 76  DSLDEFMEKCD-----------GEVHLISKFANKVYSDENYNDGKHHYFLFGREDKGLP- 123

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175
           EE   +N    +  P+N     SLN+S  V ++V+E +      
Sbjct: 124 EEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 167


>gi|196250736|ref|ZP_03149424.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           G11MC16]
 gi|196209815|gb|EDY04586.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           G11MC16]
          Length = 157

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N G +AR     + T L L+ P      +K    +         V +  +
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ E  A               F  +    +      +     +++  +FGRE  GL  
Sbjct: 62  DSIDELFARF---------PGGEFYFITKFGQQYYDSFDFSDQKKDIFFVFGRETTGLPK 112

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E +    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 113 ELLEANKDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151


>gi|159899036|ref|YP_001545283.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892075|gb|ABX05155.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 266

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 20/162 (12%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P + L       N+G + R         L L+          A  +S  +   +  VR  
Sbjct: 118 PWVALNGVGNPGNLGAIMRTCDAVGCEGLILIGDTTDPYHPAAIRASMGSLFALRMVR-- 175

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +   E  A    + + +  TT      ++++  P                  ++ G ER 
Sbjct: 176 TTFDEFAAWKQTNGYHVIGTTPDVEQEYQTISYP--------------SPAILLMGSERL 221

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL+  E ++ + ++  P+     SLN+  A  ++++E     
Sbjct: 222 GLSVGEQSVCDTLVRIPMAGTCDSLNLGVATSIVLYEMFRQQ 263


>gi|325695061|gb|EGD36964.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK150]
          Length = 167

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 62  DSLEDFMEQMD------GRLYLISK-----FAEKVYSEEYFAAEGSHYFMFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 110 EEFMRCHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 163


>gi|295103485|emb|CBL01029.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
           SL3/3]
          Length = 168

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++ +N G VAR        +L LV P      +K    +         + +   
Sbjct: 9   IVLVEPRIPQNTGNVARTCACTAC-RLHLVGPMGFAIDDKKLKHA--GLDYWHYLDI--T 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             + +AD        ARN             A      +       ++FGRE  GL    
Sbjct: 64  YYDGLADFF------ARNNG---PYYYFTTKAPQRYTDVQYPDGAYLVFGREDAGLPEAL 114

Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
           +A +       P+     SLN+S +V + V+E +   
Sbjct: 115 LAENQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151


>gi|302877470|ref|YP_003846034.1| RNA methyltransferase, TrmH family, group 2 [Gallionella
           capsiferriformans ES-2]
 gi|302580259|gb|ADL54270.1| RNA methyltransferase, TrmH family, group 2 [Gallionella
           capsiferriformans ES-2]
          Length = 158

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G + R   N    QL L+ P      +K    +        ++RV+ +
Sbjct: 4   VILYQPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTLEDKQLIRAGLDYHEFANLRVYDH 62

Query: 77  LKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+  ++  D   I+A T +    F  +                      +FG E  GL  
Sbjct: 63  LEACLSAFDAGRIFALTTKGSQPFHEIRY--------------QPGDAFLFGPESRGLPA 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +        +  P+ P   SLN+S  V + V+E    
Sbjct: 109 EVLNQLTTTQRVRLPMLPDNRSLNLSNTVAVAVFEAWRQ 147


>gi|138894170|ref|YP_001124623.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2]
 gi|134265683|gb|ABO65878.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2]
          Length = 157

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N G +AR     + T L L+ P      +K    +         V +  +
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ E  A               F  +    +      +     +++  +FGRE  GL  
Sbjct: 62  DSIDELFARF---------PGGEFYFITKFGQQYYDSFDFSDQEKDIFFVFGRETTGLPK 112

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E +    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 113 ELLEANKDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151


>gi|119504920|ref|ZP_01626997.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459206|gb|EAW40304.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 158

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 65/166 (39%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++  N G + R   N     L ++ P      +K    +       +   V  +
Sbjct: 8   IVLYEPEIPGNTGSIIRLCANTGAA-LHVIKPLGFEMDDKRLRRA--GLDYHEFASVMQW 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L       H+      R +N+ + ++A +   +  +       +  ++FG E  GL  
Sbjct: 65  ESLA------HY------REQNSDRRLVAVETCGVARHSNFSFSNSDALLFGSETKGLPE 112

Query: 135 E---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                ++  + I+  P+ P   SLN++ AV ++V+E          
Sbjct: 113 AILVTLSR-DHIVKLPMLPNSRSLNLANAVSVVVYEAWRQGDYPGA 157


>gi|149192621|ref|ZP_01870771.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1]
 gi|148833544|gb|EDL50631.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1]
          Length = 158

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V+   +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVKRHKD 62

Query: 77  LKEAIA-------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               IA       +      TT    ++                     Q   ++FG E 
Sbjct: 63  YAAFIAYLEENNPNYRLFACTTKTTGHHT---------------DAKYQQGDVLLFGPET 107

Query: 130 WGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  E I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 108 RGLPAEVIESLPMEQRIRIPMMPDARSLNLSNAVAIIAYEAWRQ 151


>gi|260437718|ref|ZP_05791534.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
           DSM 2876]
 gi|292809741|gb|EFF68946.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
           DSM 2876]
          Length = 164

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R     + T L L+ P     ++K    +       D   VR++
Sbjct: 4   IVLHEPEMPANTGNIGRTCVATD-TVLHLIEPLGFKINDKMLKRA--GLDYWDKLDVRIY 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  + +A         ATT   R+                  +    +  I+FG+E  G
Sbjct: 61  DDFDDFLAKNPGAKIYMATTKAARSYT---------------DVQYEDDCYIMFGKESAG 105

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +    +  +  P+     SLN+S +V ++++E +  
Sbjct: 106 IPESILQKYQDTAVRIPMWGDIRSLNLSNSVAIVLYEALRQ 146


>gi|325981842|ref|YP_004294244.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp.
           AL212]
 gi|325531361|gb|ADZ26082.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp.
           AL212]
          Length = 154

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 23/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           IIL  P++  N G + R   N  + QL LV P      +K    +       +  +  V 
Sbjct: 4   IILYQPEIPPNTGNIIRLCANTGM-QLHLVKPLGFPLQDKQLLRA--GLDYHEFAQIIVH 60

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  +   +L  H ++A T R +  +              +++        +FG E  GL
Sbjct: 61  DSWADCCHNLRDHRMFAITTRGKQGY--------------DKVSYAAGDAFLFGAESRGL 106

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  +        I  P+     SLN+S  V ++ +E    S
Sbjct: 107 PSHIMDTFPEQRRIRVPMVANSRSLNLSNTVAIIAYEAWRQS 148


>gi|21229687|ref|NP_635604.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766564|ref|YP_241326.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989626|ref|YP_001901636.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21111170|gb|AAM39528.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571896|gb|AAY47306.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731386|emb|CAP49561.1| RNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 158

 Score = 79.7 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +  R  V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYARLQVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L  A+A L    ++A + R+          +       +          +FG E  GL
Sbjct: 65  PDLPTALATLAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +        +  P+ P   SLN+S  V +MV+E       +  +
Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFTGGQ 158


>gi|253699560|ref|YP_003020749.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21]
 gi|251774410|gb|ACT16991.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21]
          Length = 158

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 24/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+LV+P++  N G +AR       T L LV  + G+ ++      A        V +   
Sbjct: 9   IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAG-LDYWSEVEIHYW 65

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                LK+A     F+Y +   +++       P +                I+FG+E  G
Sbjct: 66  PDLPALKQAYPGGRFVYTSKKADKSYLAFTFLPGDF---------------IVFGKETKG 110

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           L  E I   +   +  P+     SLN+S +  ++++E +  S  
Sbjct: 111 LPEELIEANAQTAVRIPIPGKVRSLNLSTSAGIVLYEALRQSGA 154


>gi|306834125|ref|ZP_07467245.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304423698|gb|EFM26844.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 181

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       +   V  +
Sbjct: 19  IVLFQPQIPQNTGNIARTCAATNAP-LHIIRPMGFPIDDRKMKRA--GLDYWEKLDVTFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +                   +++     +  +E    G++   +FGRE  GL  
Sbjct: 76  DSLDEFMEKCD-----------GEVHLISKFANKVYSDENYNDGKHHYFLFGREDKGLP- 123

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175
           EE   +N    +  P+N     SLN+S  V ++V+E +      
Sbjct: 124 EEFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 167


>gi|149181311|ref|ZP_01859809.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
 gi|148851036|gb|EDL65188.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
          Length = 160

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L  P++  N G +AR     + T L L+ P      +K    +         V +
Sbjct: 2   GIHVVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLRRA--GLDYWQFVEI 58

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
             + +++E             +N       L    E      +     ++   IFGRE  
Sbjct: 59  NYYDSIEEFFE----------KNEGGEFYYLTKYGENVHSGYDYSNKEKDYYFIFGRETT 108

Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL +E I    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 109 GLPDEVIENNKDRCLRIPMNNNARSLNLSNTAAILVYEALRQQ 151


>gi|257439147|ref|ZP_05614902.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
 gi|257198398|gb|EEU96682.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
          Length = 174

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74
           I+LV+P++ +N G VAR        +L LV P  G+  +  +   A  D    +D +  +
Sbjct: 15  IVLVEPRIPQNTGNVARTCACTAC-RLHLVGPM-GFAIDDKKLKHAGLDYWHYLD-INYY 71

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L++            ARN+  F         A      I       ++FGRE  GL  
Sbjct: 72  DGLEDFF----------ARNKGPFYYFTT---KAPQRYTDIQYPDGAYLVFGREDAGLPE 118

Query: 135 EEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
             +A +       P+     SLN+S +V + V+E +   
Sbjct: 119 ALLAANQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 157


>gi|219668434|ref|YP_002458869.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219538694|gb|ACL20433.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 155

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV+P++  N G VAR         L LV P     S+K    +       D   + ++
Sbjct: 6   IVLVEPEIPPNTGNVARLCAATGAA-LHLVKPLGFEISDKHLKRA--GLDYWDMLDIHIY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N  E            A+N    + +   K  A  L+  I   Q   I+FG+E  GL+ 
Sbjct: 63  ENYAE----------FEAKNPQGPRYLATTK--AQRLHTDIHYQQGGYILFGKETKGLSP 110

Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E +A      +  P+     SLN+S +V ++V+E +       
Sbjct: 111 EILARYPETTLRLPMRADARSLNLSNSVAVVVYEALRQWGNPG 153


>gi|330818396|ref|YP_004362101.1| RNA methyltransferase [Burkholderia gladioli BSR3]
 gi|327370789|gb|AEA62145.1| RNA methyltransferase [Burkholderia gladioli BSR3]
          Length = 169

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      ++V  
Sbjct: 17  VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKLRRAGLDYHEYAQMQVHR 74

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    IA    D   ++A T R    F      P +                 +FG E  
Sbjct: 75  DWDAFIAREQPDPARLFAFTTRGSGRFHDHAFTPGDW---------------FVFGAETR 119

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL+   +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 120 GLSESMLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 163


>gi|89898732|ref|YP_515842.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89332104|dbj|BAE81697.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 156

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 22/165 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L +P + +N G + R        +L LV P      +K    +       D V   V 
Sbjct: 3   VVLYNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLLDKFVKRA--GMDYWDKVNPSVV 59

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L EA++ +    ++  + +    +  V  P +                 +FG E  GL
Sbjct: 60  DSLDEALSGIDENKVFCLSTKGSQCYGDVSLPMDG--------------VYVFGSESKGL 105

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             E +    N     P+ P   SLN++  V ++++E +  +  S+
Sbjct: 106 PEEVLKKYYNHCYYLPMKPGVRSLNLATTVGVVLFEAVRQNNQSA 150


>gi|89894053|ref|YP_517540.1| hypothetical protein DSY1307 [Desulfitobacterium hafniense Y51]
 gi|89333501|dbj|BAE83096.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 155

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV+P++  N G VAR         L LV P     S+K    +       D   + ++
Sbjct: 6   IVLVEPEIPPNTGNVARLCAATGAA-LHLVKPLGFEISDKHLKRA--GLDYWDMLDIHIY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N  E            A+N    + +   K  A  L+  I   Q   I+FG+E  GL+ 
Sbjct: 63  ENYAE----------FEAKNPQGPRYLATTK--AQRLHTDIHYQQGGYILFGKETKGLSP 110

Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E +A      +  P+     SLN+S +V ++V+E +       
Sbjct: 111 EILARYPETTLRLPMRADARSLNLSNSVAVVVYEALRQWGNPG 153


>gi|188585180|ref|YP_001916725.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349867|gb|ACB84137.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 152

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           ++LV+P++  N G ++R     N   T L LV P     S++    +       D +   
Sbjct: 3   VVLVEPEIPPNTGNISRTCAVSN---TTLHLVEPLGFSISDRELKRA--GLDYWDKLSYQ 57

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F++++  +       ATT R +N +  +  P++                ++FG+E 
Sbjct: 58  VHENFTSVENLLQTHPIYIATT-RGKNYYYDIEYPRD--------------SVLVFGKET 102

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL +  I       I  P+ P F SLN+S +V ++++E +   
Sbjct: 103 EGLPDWIINKYYENSIRIPMAPDFRSLNLSNSVAVVLFEALRQQ 146


>gi|297182173|gb|ADI18344.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
          Length = 172

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 10/151 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    + +  L L          K   ++      +    +   + EAI 
Sbjct: 32  QTPYNVGAILRTAAAYRVAHLWLAGSTAPPTHAKTAKTALGTGRYLTW-TICEEVSEAIE 90

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +        R        +   + A+ +NE     +   + FG E  GL+   +A  + 
Sbjct: 91  GI--------RAAGYGLVGVELADQAVPINEAALP-EKACLAFGHEDRGLSATTLAACDV 141

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +   P      SLN+S A  + ++E      
Sbjct: 142 VAFIPQLGKVGSLNVSTAAGIALYELNRRGW 172


>gi|239623216|ref|ZP_04666247.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522182|gb|EEQ62048.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 167

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 16/169 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L++P++  N G + R       T+L L+ P     +EKA   +       D   V V+
Sbjct: 3   VVLLEPEMPSNTGNIGRTCVAT-QTRLHLIEPLGFKLNEKALKRA--GLDYWDKLDVTVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+ ++ +           RN +    +      A  +   +    +  ++FG+E  G+  
Sbjct: 60  SDYQDFLE----------RNPDALGRMYFATTKAHKVYSDMKYETDCYLMFGKESAGIPE 109

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           E +    +  +  P+     SLN+S +V ++++E +        + + +
Sbjct: 110 EILVENEDHCVRIPMWGDIRSLNLSNSVSIVLYEALRQHGFEEMELMGQ 158


>gi|254785253|ref|YP_003072681.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
           turnerae T7901]
 gi|237684509|gb|ACR11773.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
           turnerae T7901]
          Length = 155

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 21/167 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           ++L  P++  N G + R   N    QL LV P      +K    +        ++++   
Sbjct: 4   VVLYQPEIPPNTGNIIRLCANTGC-QLHLVKPLGFVLDDKRLRRAGLDYSEWQNLKIHEN 62

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L++A A    I+A + +              A     R  +G    ++FG E  GL 
Sbjct: 63  WQSLRDA-AGTATIWALSTKG------------TATHSEARFSAGDY--LVFGPETRGLP 107

Query: 134 NE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +  E      ++  P+     S+N+S A  +MV+E        S K
Sbjct: 108 ADIRESLPPEQVLRIPMQAQSRSMNLSNAAAVMVYEAWRQLGYPSAK 154


>gi|300864366|ref|ZP_07109239.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
 gi|300337641|emb|CBN54385.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
          Length = 152

 Score = 79.3 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 17/160 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           P ++L+ PQ+  N G +AR       T+L LV P     S++    +          ++ 
Sbjct: 2   PSVVLISPQIPPNTGNIARTCAAT-RTELHLVGPLGFEISDRYLKRA--GLDYWPYVNLH 58

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL EA    H         R       + K        R     N  ++FG E  GL
Sbjct: 59  SHDNL-EAFKACHQ-------QRGGRWIGFSTK--GQCSYTRFEFQNNDWLLFGAETTGL 108

Query: 133 TNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
             E +      +  P++ P   SLN+S +V + ++E    
Sbjct: 109 PPEILEACTN-VRIPMSEPGVRSLNLSVSVAVGLFEAQRQ 147


>gi|167767431|ref|ZP_02439484.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1]
 gi|317497260|ref|ZP_07955584.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710723|gb|EDS21302.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1]
 gi|291558735|emb|CBL37535.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium
           SSC/2]
 gi|316895505|gb|EFV17663.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 165

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 22/172 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R         L L+ P     +EK    +       D + V   
Sbjct: 4   IVLHEPEMPANTGNIGRTCVACG-AVLHLIEPLGFRLNEKMIKRA--GLDYWDKLDVRTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +  E   D     ATT       K V +               ++V I+FG+E  G
Sbjct: 61  INFEDFLEKNNDPKIYMATT-----KAKHVYSAPAY--------EDDEDVYIMFGKESAG 107

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +  E +       I  P+ P   SLN+S +V ++ +E + +    + +   +
Sbjct: 108 IPEEILLNYEETSIRIPMLPHIRSLNLSNSVAIVAYEVLRHQGFKAFQMEGQ 159


>gi|90408298|ref|ZP_01216463.1| putative rRNA methylase, SpoU family protein [Psychromonas sp.
           CNPT3]
 gi|90310599|gb|EAS38719.1| putative rRNA methylase, SpoU family protein [Psychromonas sp.
           CNPT3]
          Length = 154

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73
           I L +P++ +N G + R   N     L L+ P     +EK    +    +    I   + 
Sbjct: 4   IALFEPEIPQNTGAIIRVCANTGCI-LHLIEPLGFDFNEKRVRRAGLDYHEIANIKHHKN 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +  E++     +  TT             K           SG    ++FG E  GL 
Sbjct: 63  YQDFLESVKGKRILACTT-------------KTTTYHSQANFQSGD--VLLFGPETRGLP 107

Query: 134 NEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +E +   +A+     +  P+ P   S+N++ AV + V+E    
Sbjct: 108 SELL---DALPLEQKLRIPMQPNSRSMNLANAVSVFVYEAWRQ 147


>gi|332523185|ref|ZP_08399437.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314449|gb|EGJ27434.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 181

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 18/164 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +PQ+ +N G +AR     N   L ++ P      ++    +       +   VR +
Sbjct: 19  IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRA--GLDYWEKLDVRFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL++ +                   +++   + +  +E    GQ    +FGRE  GL  
Sbjct: 76  DNLEDFLDKCD-----------GQLHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLPE 124

Query: 135 EEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
             +       +  P+N     SLN+S  V ++V+E +       
Sbjct: 125 AFMRKYPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFEG 168


>gi|157415161|ref|YP_001482417.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386125|gb|ABV52440.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747804|gb|ADN91074.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932614|gb|EFV11545.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 155

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L ++ P     S+KA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT   +  F                    +N  + FG E 
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAEFQKNDFLFFGSES 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL   E+   N    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|60416311|sp|P69001|TRML_LISIN RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase lin0934
 gi|313624393|gb|EFR94411.1| RNA methyltransferase, TrmH family, group 2 [Listeria innocua FSL
           J1-023]
          Length = 169

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E     A   F Y T        + V +  +            +N   +FG+E  
Sbjct: 61  YDSLDEFFEKNAGGEFYYIT-----KFGRHVYSDVDY-------SDPNKNYFFVFGKETT 108

Query: 131 GLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  +E+  +N    +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLP-DELLQANEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151


>gi|291615064|ref|YP_003525221.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
 gi|291585176|gb|ADE12834.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
          Length = 186

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 27/176 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N     L L+ P      +K    +       +    RV+
Sbjct: 4   VILYQPEIPPNTGNVIRLCANTG-AHLHLIRPLGFDLDDKNLRRA--GLDYHEYASVRVY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKS-----VLAPKEAAIVLNERIFSGQNV-------- 121
             L E +  L      TA    N         ++ +E A       F+ +          
Sbjct: 61  DTLVECLDTLPLA---TALPHPNPPPGGEGTSVSLRELADTRRAFAFTTKGSHPFNEVRY 117

Query: 122 ----GIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 +FG E  GL  E +A       +  P+ P   SLN+S  V + V+E    
Sbjct: 118 QPGDAFLFGPESRGLPAEVLAAFVPERRLRLPMLPDNRSLNLSNTVAVTVYEAWRQ 173


>gi|169794928|ref|YP_001712721.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213157667|ref|YP_002320465.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057]
 gi|215482474|ref|YP_002324660.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301344898|ref|ZP_07225639.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB056]
 gi|301511069|ref|ZP_07236306.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB058]
 gi|301596286|ref|ZP_07241294.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB059]
 gi|332854216|ref|ZP_08435236.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013150]
 gi|332866342|ref|ZP_08436947.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013113]
 gi|169147855|emb|CAM85718.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213056827|gb|ACJ41729.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057]
 gi|213987372|gb|ACJ57671.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332728141|gb|EGJ59529.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013150]
 gi|332734690|gb|EGJ65794.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013113]
          Length = 157

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    QL LV P      +K    +         ++++ N
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++   ADL       A+   +   +             +   + V ++ G E  GL  E 
Sbjct: 63  IELCRADLK------AKGVEHIFPLTT---KGSATPHTVDLNRPVALLMGPETRGLP-EH 112

Query: 137 IALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + L       I  P+     SLN+S A  ++V+E     
Sbjct: 113 VRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQQ 151


>gi|294783881|ref|ZP_06749203.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           1_1_41FAA]
 gi|294479693|gb|EFG27472.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           1_1_41FAA]
          Length = 150

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+    N   + L L+ P      EK    +      +  ++++
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTN---STLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +     +   YATT   +                   +   +N  I+FG E  G
Sbjct: 60  ESFEEFLEANKGIRLFYATTKTKQKYS---------------DVKYEENDFIMFGPESRG 104

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEEILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145


>gi|239993570|ref|ZP_04714094.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 154

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N     L L+ P      +K    +         V+  +N
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRHAN 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L   + D     ++A T + +     V                 +   +IFG E  GL +
Sbjct: 63  LDAYLNDAKPKRVFACTTKGKAFHSDV--------------SYEKGDALIFGPETRGLPD 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + I        +  P+ P   S+N+S AV + V+E    
Sbjct: 109 DYIQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQ 147


>gi|325299402|ref|YP_004259319.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324318955|gb|ADY36846.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 178

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P V++L D +   NIG V R    F +  + L       P  +   ++  A
Sbjct: 18  EEFKEAKKIPLVVVLDDVRSLHNIGAVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGA 77

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERI--FSGQNV 121
           +  +D  + F + ++A+ +L          R    ++ A ++    +L +++     +  
Sbjct: 78  EYTVDW-KYFQHTEDAVNEL----------RTMGYTLFAIEQCEGSILLDKLVLEPDKKY 126

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            ++ G E  G+  E + L +  I  P      SLN+S    +++WE
Sbjct: 127 AVVLGNEVKGVKQEVVNLCDGCIEIPQFGTKHSLNVSVTAGIVIWE 172


>gi|239826057|ref|YP_002948681.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
 gi|239806350|gb|ACS23415.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
          Length = 157

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N G +AR     + T L L+ P      +K    +         V +  +
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L+E         F + T        K      + + +  +          +FGRE  G
Sbjct: 62  DSLEELFERYPNGEFYFIT-----KFGKKYYDSFDFSDMEKDH-------FFVFGRETTG 109

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  + +    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 110 LPKDLLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151


>gi|283956249|ref|ZP_06373729.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791969|gb|EFC30758.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 155

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L+ P++ +N G + R  +N    +L +V P     S+KA   +       D +   ++
Sbjct: 4   IVLIHPRIPQNTGSIGRMCFNAGF-KLHIVKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT   +  F                    +N  + FG E 
Sbjct: 61  ENLEEFLNENIIYKNRFFFATTKSQKAYF---------------DAEFQKNDFLFFGSES 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL   E+   N    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|298492795|ref|YP_003722972.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234713|gb|ADI65849.1| RNA methyltransferase, TrmH family, group 2 ['Nostoc azollae' 0708]
          Length = 153

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 14/159 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P I+LV+PQ+  N G +AR       T+L LV P     S++    +         V++ 
Sbjct: 2   PQIVLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLH 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +    EA   +H         R         + +   +N +  +     +++G E  GL 
Sbjct: 59  YHESMEAFQTIHQ-------QRGGRLLGFTVRGSFNYINYQFQADDW--LLYGSETTGLP 109

Query: 134 NEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
              ++  ++ +  P++ P   SLN+S +V + ++E    
Sbjct: 110 ATVLSTCDSTLYIPIDEPGVRSLNLSISVAIGLFESRRQ 148


>gi|29839847|ref|NP_828953.1| RNA methyltransferase [Chlamydophila caviae GPIC]
 gi|666878|gb|AAB41347.1| spoU [Chlamydophila caviae]
 gi|29834194|gb|AAP04831.1| RNA methyltransferase, TrmH family [Chlamydophila caviae GPIC]
          Length = 156

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 22/165 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L +P + +N G + R        +L LV P      +K    +       D V   V 
Sbjct: 3   VVLYNPDIPQNTGNIGRTCIALG-AELILVRPLGFSLLDKFVKRA--GMDYWDKVNLSVV 59

Query: 75  SNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L EA++ +    ++  + +    +  V  P +                 +FG E  GL
Sbjct: 60  DSLDEALSGVDQNKVFCLSTKGSQYYGDVSLPMDG--------------VYVFGSESKGL 105

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             + +    N     P+ P   SLN++  V ++++E +  +  S+
Sbjct: 106 PEDVLKKYYNHCYYLPMRPGIRSLNLATTVGVVLFEAVRQNNQSA 150


>gi|307728345|ref|YP_003905569.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1003]
 gi|307582880|gb|ADN56278.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1003]
          Length = 156

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P  G+P E A+   A      +  +  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLEDAKLRRAG-LDYHEYAQMNVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           +N    IA    D   ++A T R    F      P +                 +FG E 
Sbjct: 61  ANWAAFIAKESPDASRMFAFTTRGSGRFHEHAFKPGDW---------------FVFGAET 105

Query: 130 WGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL +  +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 106 RGLPDAVLDQFTGEQRVRLPMRPGNRSLNLSNTVAIVVFEAWRQT 150


>gi|294671329|ref|ZP_06736180.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306961|gb|EFE48204.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 262

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 27/181 (14%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A +L     G  ++L   Q   NIG + R+     +  + L        S K   ++ 
Sbjct: 103 PSAEKLPED--GDCVVLERVQDPGNIGTILRSAAASGVRDIVLGADCADVWSPKVLRAAM 160

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---- 118
            A  ++    ++ +   A+             R  ++  L     A  L+ER        
Sbjct: 161 GAHFLL---TLYPDTDLAV------------WRQGYRPPLL----ATALDERACGLYGLD 201

Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                G +FG E  G++ E   +++  +  P+     SLN++ A  + ++E M   + ++
Sbjct: 202 LRDPCGWLFGNEGAGISAEMRRVADRTVKIPMAGDTESLNVAMAATVCLFEQMRQRLPAA 261

Query: 177 E 177
           E
Sbjct: 262 E 262


>gi|315929850|gb|EFV09013.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 155

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++ +N G + R  +N    +L ++ P     S+KA   +       D +   ++
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGF-KLHIIKPTVFDISQKAVRRA--GLDYWDKLEPIIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL+E + +       F +ATT   +  F                    +N  + FG E 
Sbjct: 61  ENLEEFLNENMIYKNRFFFATTKSQKAYF---------------DAKFQKNDFLFFGSES 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL   E+   N    I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLP-MELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQ 148


>gi|307823279|ref|ZP_07653509.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
           tundripaludum SV96]
 gi|307736054|gb|EFO06901.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
           tundripaludum SV96]
          Length = 158

 Score = 78.9 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N  + QL L+ P      +K    +        +V+   +
Sbjct: 4   IVLYEPEIPANTGNIIRLCANTGM-QLHLIKPLGFELDDKKLRRAGLDYHEWVAVKEHDS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L + +  +    I+A T +    +  V    E A               +FG E  GL  
Sbjct: 63  LADFVDSIKPGRIFALTTKGTQIYSEVSFQPEDA--------------FLFGPETRGLPA 108

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +A   S   +  P+     SLN+S  V ++++E    
Sbjct: 109 TVLADLGSERCLYLPMQAESRSLNLSNTVSIVLYEAWRQ 147


>gi|58583829|ref|YP_202845.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84625632|ref|YP_453004.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574839|ref|YP_001911768.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|58428423|gb|AAW77460.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369572|dbj|BAE70730.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519291|gb|ACD57236.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 158

 Score = 78.9 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +    +V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLKVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L  A+A +    ++A + R+          +       +          +FG E  GL
Sbjct: 65  VDLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +        +  P+ P   SLN+S  V +MV+E       +  +
Sbjct: 111 PTEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158


>gi|15676192|ref|NP_273324.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|261400498|ref|ZP_05986623.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica
           ATCC 23970]
 gi|296313717|ref|ZP_06863658.1| RNA methyltransferase, TrmH family, group 2 [Neisseria
           polysaccharea ATCC 43768]
 gi|313669261|ref|YP_004049545.1| tRNA/rRNA methyltransferase [Neisseria lactamica ST-640]
 gi|7225492|gb|AAF40722.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|254671569|emb|CBA09217.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha153]
 gi|269209758|gb|EEZ76213.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica
           ATCC 23970]
 gi|296839640|gb|EFH23578.1| RNA methyltransferase, TrmH family, group 2 [Neisseria
           polysaccharea ATCC 43768]
 gi|308388487|gb|ADO30807.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha710]
 gi|309379777|emb|CBX21553.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006723|emb|CBN88193.1| putative tRNA/rRNA methyltransferase [Neisseria lactamica 020-06]
 gi|316985198|gb|EFV64150.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
 gi|325128977|gb|EGC51828.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           N1568]
 gi|325130994|gb|EGC53721.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           OX99.30304]
 gi|325135071|gb|EGC57699.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M13399]
 gi|325137093|gb|EGC59689.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M0579]
 gi|325141104|gb|EGC63607.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           CU385]
 gi|325145261|gb|EGC67540.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240013]
 gi|325199471|gb|ADY94926.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           H44/76]
 gi|325202905|gb|ADY98359.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240149]
 gi|325205352|gb|ADZ00805.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M04-240196]
 gi|325207296|gb|ADZ02748.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           NZ-05/33]
          Length = 154

 Score = 78.9 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+L  P++  N G + R   N     L LV P  G+P + A+   A  D     S+ V 
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVH 60

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N  +   A+A    I+A T   +   +      +   VL            +FG E  G
Sbjct: 61  ENFDDCLKALAG-RRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 106 LPADILDSLPAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQ 147


>gi|119776572|ref|YP_929312.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B]
 gi|119769072|gb|ABM01643.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B]
          Length = 158

 Score = 78.9 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 25/169 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N    +L L+ P      EK    +       D  RV   
Sbjct: 8   IALYEPEIAPNTGNIIRLCANNGC-ELHLIEPLGFDLEEKKLRRA--GLDYSDMTRVTRH 64

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +  EA+A    +  TT  +R +               E  +   +V ++FG E  G
Sbjct: 65  KDFPSFLEAMAGRRILACTTKGSRPHT--------------ELEYQAGDV-LLFGPESRG 109

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           L  + I        +  P+     SLN+S AV ++ +E          +
Sbjct: 110 LPMDIINSVPTEQRLRIPMVESSRSLNLSNAVAIISYEAWRQQGFGGAR 158


>gi|189425147|ref|YP_001952324.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
 gi|189421406|gb|ACD95804.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
          Length = 154

 Score = 78.9 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 19/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L++P++  N G +AR       T L LV        ++    +       D V  + +
Sbjct: 6   IVLIEPEIPPNTGNIARLCAATAAT-LHLVGKLGFSIDDRYLKRA--GLDYWDKVDLKRW 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL++ +   H            F  +    + A    E+        ++FG+E  GL  
Sbjct: 63  ENLEQ-LQQQH--------PEGRFWYLST--KVARNCYEQGIYQPGDFLVFGKETAGLP- 110

Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E+ L+N    ++ P+     SLN+S A  ++++E +  +
Sbjct: 111 AELLLANQERCLTIPMPGQVRSLNLSNAAAVVLYEALRQT 150


>gi|296436073|gb|ADH18247.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/9768]
 gi|296437001|gb|ADH19171.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/11222]
 gi|296437934|gb|ADH20095.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/11074]
 gi|297140434|gb|ADH97192.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/9301]
          Length = 151

 Score = 78.9 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73
            I+L +P + +N G + R        +L LV P     ++K    +       +  S+ V
Sbjct: 2   RIVLHNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWERLSLSV 58

Query: 74  FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +L+EA+  +    I+  T +  + +     P +                 IFG E  G
Sbjct: 59  VDSLEEALLGVPKERIFCLTTKGSSYYGERELPLDG--------------TYIFGAESKG 104

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    + A ++  +  P+     SLN++ +V ++++E    
Sbjct: 105 LPQTVLDAYASQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|166154755|ref|YP_001654873.1| SpoU family rRNA methylase [Chlamydia trachomatis 434/Bu]
 gi|166155630|ref|YP_001653885.1| SpoU family rRNA methylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336029|ref|ZP_07224273.1| SpoU family rRNA methylase [Chlamydia trachomatis L2tet1]
 gi|165930743|emb|CAP04240.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis 434/Bu]
 gi|165931618|emb|CAP07194.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 151

 Score = 78.9 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 22/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73
            I+L +P + +N G + R        +L LV P     ++K    +       +  S+ V
Sbjct: 2   RIVLHNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWERLSLSV 58

Query: 74  FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +L+EA+  +    I+  T +  + +     P +                 IFG E  G
Sbjct: 59  VDSLEEALLGVPKERIFCLTTKGSSYYGERELPLDG--------------TYIFGAESKG 104

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+   + A S+  +  P+     SLN++ +V ++++E    
Sbjct: 105 LSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|332295004|ref|YP_004436927.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
 gi|332178107|gb|AEE13796.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
          Length = 149

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++ +N G + R      ++ L +V P     ++K    +         +    +
Sbjct: 3   VVLVEPEIPQNTGNIGRLCVATGVS-LIIVGPTGFILNDKKLKRA--GMDYWKHLDFTFY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +EA A              N   + +P  +   +  +    +   +IFG+E  GL  
Sbjct: 60  PTFEEARAVFD----------QNDIFLFSP--SGKNIYTKGRYSKESILIFGKESMGLDK 107

Query: 135 EEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +          P+     SLN++ +V ++++E +  
Sbjct: 108 NILQEFEEKTYFIPMKKEARSLNLANSVAIVLYEALRQ 145


>gi|257092700|ref|YP_003166341.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045224|gb|ACV34412.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 154

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G V R   N    +L LV P     +++    +       +   V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGC-RLHLVKPLGFDLADRNLRRA--GLDYHEYAEVRVH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +  L+ A+        TT   R               + +R F+  +V  +FG E  G
Sbjct: 61  DDWPALRVALVGRRLFACTTRAART--------------IADRRFAAGDV-FVFGSETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L    +A    +  +  P+ P   SLN+S AV + V+E       +  
Sbjct: 106 LPAAVLAEFADDWRLRLPMLPGQRSLNLSNAVAVTVFEAWRQQAYAGG 153


>gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 156

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 23/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G + R   N    QL L+ P  G+P + A+   A  D     +++V+ 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANSG-AQLHLIEPL-GFPLDDAKMRRAGLDYHEFATMKVYK 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           N    L++   D   ++A T R  + F ++                      IFG E  G
Sbjct: 62  NWNDFLEKMTPDPSRMFAFTTRGSSIFSTLEFRPGDM--------------FIFGSETKG 107

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+ E  A       +  P+ P   SLN+S +V + V+E    
Sbjct: 108 LSPEIHAFFQDGHRVRLPMRPDNRSLNLSNSVAIAVYEAWRQ 149


>gi|158319987|ref|YP_001512494.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158140186|gb|ABW18498.1| RNA methyltransferase, TrmH family, group 2 [Alkaliphilus
           oremlandii OhILAs]
          Length = 156

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L++P++ +N G +AR       + L L+ P      EK    +      +  +R + +
Sbjct: 4   VVLLEPEIPQNTGNIARTCAATG-SVLHLIGPMGFSIDEKHVKRAGLDYWELLDLRYYDS 62

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +E ++   +    YATT +       ++ P+E             N  I+FG+E  G+ 
Sbjct: 63  YEEFLSKNPEATIYYATT-KAEKAHSEMVYPEE-------------NCYIMFGKETAGIP 108

Query: 134 ----NEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171
               NE        I  P+       SLN+S +V ++V+E +  
Sbjct: 109 KNILNENKETC---IRIPMVDLEKARSLNLSNSVAIVVYEVLRQ 149


>gi|329942398|ref|ZP_08291208.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10]
 gi|332287039|ref|YP_004421940.1| rRNA methylase [Chlamydophila psittaci 6BC]
 gi|313847636|emb|CBY16624.1| putative rRNA methylase [Chlamydophila psittaci RD1]
 gi|325506473|gb|ADZ18111.1| rRNA methylase [Chlamydophila psittaci 6BC]
 gi|328815308|gb|EGF85296.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10]
 gi|328914271|gb|AEB55104.1| spoU [Chlamydophila psittaci 6BC]
          Length = 156

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L  P + +N G + R        +L LV P      +K    +       D V   V 
Sbjct: 3   VVLYQPDIPQNTGNIGRTCIALG-AELILVRPLGFSLLDKFVKRA--GMDYWDKVNLSVV 59

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L E ++ +    ++  + +    +  V  P +                 +FG E  GL
Sbjct: 60  DSLDEVLSGVDEDKVFCLSTKGTQYYGDVFLPMDG--------------VYVFGSESKGL 105

Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             E +   +      P+ P   SLN++  V ++++E +  +  S+
Sbjct: 106 PEEVLKKYHNHTYYLPMKPGIRSLNLATTVGVVLFEAVRQNNQSA 150


>gi|54307450|ref|YP_128470.1| rRNA methylase [Photobacterium profundum SS9]
 gi|46911870|emb|CAG18668.1| putative rRNA methylase, SpoU family [Photobacterium profundum SS9]
          Length = 159

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73
           I L +P++  N G + R   N     L L+ P      EK    +    +    +   + 
Sbjct: 9   IALYEPEIAPNTGNIIRLCANCG-ADLHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKD 67

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F+  KEA+A       TT     +              N +   G    +IFG E  GL 
Sbjct: 68  FAAFKEAMAGRRLFACTTKTTNYHT-------------NAQFAEGD--VLIFGPETRGLP 112

Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               E + L   +   P++P   SLN+S A  ++ +E    
Sbjct: 113 ADFIESLPLEQRL-RIPMHPDSRSLNLSNAAAIIGYEAWRQ 152


>gi|254491074|ref|ZP_05104255.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga
           thiooxidans DMS010]
 gi|224463587|gb|EEF79855.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga
           thiooxydans DMS010]
          Length = 157

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N    QL L+ P      +K    +        ++++ S+
Sbjct: 4   IALFEPEIPPNTGNIIRLCANTG-AQLHLIEPLGFALDDKRLRRAGLDYHEFANLKIHSD 62

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +         ++A T + R +   V    E                ++FG E  GL  
Sbjct: 63  FAQFQQWQQQRRVFACTTKARQHHHDVQYQDED--------------ILLFGPESRGLPA 108

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +    +   I  P+ P   SLN+S A  +++++  + 
Sbjct: 109 EVLDSLTAEFKIRIPMLPDSRSLNLSNATGIILYQAWQQ 147


>gi|262273462|ref|ZP_06051276.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222440|gb|EEY73751.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 188

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I L +PQ+  N G + R   N    +L L+ P      EK    +      + ++  +  
Sbjct: 38  IALHEPQIAPNTGNIIRLAANTGC-KLHLIEPLGFNFEEKKLRRAGLDYHDLTNITRYPD 96

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                +A+ D      TT  +R            A  +            +FG E  GL 
Sbjct: 97  YATFLDAMGDRRIFACTTKGSR----PHSDINYQAGDV-----------FLFGSETSGLP 141

Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++I  +   +  I  P+ P   SLN++ +V ++ +E    
Sbjct: 142 -DDIRNAFSPDHRIRVPMLPNNRSLNLANSVSVVCYEAWRQ 181


>gi|304398991|ref|ZP_07380860.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
 gi|304353451|gb|EFM17829.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
          Length = 157

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFAWDDKRLRRAG-----LDYHEFT-- 55

Query: 77  LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              AI   AD     AT      + + + A        +  +       ++FG E  GL 
Sbjct: 56  ---AIKFHADYQAFIAT-----ESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E +A   +   I  P+     S+N+S AV ++V+E    
Sbjct: 108 AEILAALPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQ 147


>gi|225376769|ref|ZP_03753990.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
           16841]
 gi|225211395|gb|EEG93749.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
           16841]
          Length = 167

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P      EKA   +         + V   
Sbjct: 6   IVLYEPEIPANTGNIGRTCVATG-TKLHLIEPLGFRLDEKALKRA--GMDYWKDLDVTTY 62

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E   +     ATT       + V +                +  I+FG+E  G
Sbjct: 63  VNWDDFCEKNPNEKIYMATT-----KGRHVYSDVSYEP----------DCFIMFGKESAG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  EEI  +  +  +  P+     SLN+S +V ++++E +  
Sbjct: 108 IP-EEILKANPDTCVRIPMIGETRSLNLSNSVAIVLYEALRQ 148


>gi|320532683|ref|ZP_08033477.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135101|gb|EFW27255.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 152

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +I   P++  N G   R   N     L LV+P   +  + A+   A  D   + S RV +
Sbjct: 4   VIFFSPRIPGNTGAAIRLSANTG-AMLHLVDP--LFDMDDAKLRRAGLDYHDLASTRVHA 60

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             ++ +  +   I+A T+                  L  ++    +  ++FG E  GL  
Sbjct: 61  TWQKCLEQIPGRIFAFTS--------------HTERLYTQVDWHGDDALLFGPEPTGLPQ 106

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     +A +  P+     SLN++ +  + ++E   +
Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRS 145


>gi|295401770|ref|ZP_06811735.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112249|ref|YP_003990565.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y4.1MC1]
 gi|294976137|gb|EFG51750.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217350|gb|ADP75954.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y4.1MC1]
          Length = 157

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N G +AR     + T L L+ P      +K    +         V +  +
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-TALHLIRPLGFSTDDKMLKRA--GLDYWPYVNISYY 61

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L E         F + T        K      +          + +++  +FGRE  G
Sbjct: 62  DSLDELFGRYPHGEFYFIT-----KFGKKYYDSFDF-------SDTEKDLFFVFGRETTG 109

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  + +    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 110 LPKDLLEANMDRCLRIPMNDKVRSLNLSNTAAILVYEALRQQ 151


>gi|330831579|ref|YP_004394531.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328806715|gb|AEB51914.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas veronii
           B565]
          Length = 154

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++  N G + R   N    +L L+ P      +K    +       +   V   
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTG-YRLHLIEPLGFEWDDKRVKRA--GLDYHEFAEVKRW 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +     A+A    ++A T + R                  +   G    ++FG E  G
Sbjct: 61  PSYEAFLAAVAP-KRVFACTTKGRT------------AHSAAQYALGD--ALLFGPESRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E I        +  P+ P   S+N+S AV + V+E    
Sbjct: 106 LPIEIIESLPFEQRLRIPMVPQSRSMNLSNAVSVFVYESWRQ 147


>gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 261

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 34/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65
           + LVD     N+G + R       + + L+          A  +S  A           D
Sbjct: 118 VALVDVADPGNLGTILRTADGAGFSGVILIGSTVDPFDPAAVRASMGALFSQQIARAGWD 177

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++   R   +L         +  ++ R   ++++   P+               + ++ 
Sbjct: 178 ELLAW-RQARSLP--------VIGSSDRGTVDYRTATYPR--------------PLILVL 214

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G ER GL++E++A  + ++  P+     SLN++ A  ++++E   ++
Sbjct: 215 GSERQGLSDEQLAACDTVVRIPMRGRSDSLNLAVAAGILMYEITRDT 261


>gi|222823606|ref|YP_002575180.1| rRNA methylase, SpoU family [Campylobacter lari RM2100]
 gi|222538828|gb|ACM63929.1| rRNA methylase, SpoU family [Campylobacter lari RM2100]
          Length = 155

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 29/172 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV+P++ +N G + R  +N   T L ++NP      EKA   +          +  ++
Sbjct: 4   IVLVEPRIPQNTGSIGRMCFNAGFT-LHIINPLFSI-DEKAVKRA--GLDYWKKLNPMLW 59

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           +NL++ +         F +ATT   +  F               +   G    + FG E 
Sbjct: 60  NNLEDFLKKYEKFQDRFFFATTKTTQAYFDV-------------KFQEGD--FLFFGSES 104

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           +GL  E++   N    I+ P+     SLN++ +V ++ +E +  +  S +K+
Sbjct: 105 FGLP-EQLMQKNWKNAITIPMKDCGRSLNLATSVGIVSYEALRQNFASFKKS 155


>gi|313890845|ref|ZP_07824469.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120743|gb|EFR43858.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 182

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 31/186 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +PQ+ +N G +AR     N   L ++ P      ++    +       +   VR +
Sbjct: 20  IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMRRA--GLDYWEKLDVRFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL++ +   +               +++   + +  +E    GQ    +FGRE  GL  
Sbjct: 77  DNLEDFLDKCN-----------GQLHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLPE 125

Query: 135 EEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
             +       +  P+N     SLN+S  V ++V+E +                     EL
Sbjct: 126 AFMRKYPEKALRIPMNDQHVRSLNLSNTVCMVVYEALRQQAFEGL-------------EL 172

Query: 193 LSFLDY 198
               ++
Sbjct: 173 DHIYEH 178


>gi|148977226|ref|ZP_01813853.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3]
 gi|145963508|gb|EDK28771.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3]
          Length = 159

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V+   N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  I  L        R  +        K     ++ +   G    ++FG E  GL  E 
Sbjct: 63  LEAFIEYLE-----NEREGDYRIFACTTKTTGHHVDAKFQQGD--VLMFGPETRGLPAEF 115

Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 116 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|92115317|ref|YP_575245.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
           DSM 3043]
 gi|91798407|gb|ABE60546.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
           DSM 3043]
          Length = 164

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 21/177 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L L+ P      +K    +         V+V ++
Sbjct: 4   IVLFEPEIPPNTGNLIRLCANTGF-RLHLIEPLGFALDDKRLRRAGLDYHEWARVKVHAD 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +  +    + A + R R  +  V                 +   ++FG E  GL  
Sbjct: 63  WRAFLESVQPARVLAVSTRGRTGYHEV--------------AYREGDALVFGPETRGLPQ 108

Query: 135 ---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
              + +  +  +   P+ P   SLN+S A  ++V+E       +       +  P +
Sbjct: 109 AMLDALPPAQRL-RIPMLPDSRSLNLSNACAILVFEAWRQLEFAGAGIADAEAVPTS 164


>gi|329946838|ref|ZP_08294250.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526649|gb|EGF53662.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 152

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +I   P++  N G   R   N   + L LV+P   +  + A+   A  D   + +  V +
Sbjct: 4   VIFFSPRIPGNTGAAIRLSANTG-SMLHLVDP--LFDMDDAKLRRAGLDYHDLANTLVHA 60

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +E +  +   I+A T+                  L  ++    +  ++FG E  GL  
Sbjct: 61  TWQECLEHVPGRIFAFTS--------------HTERLYTQVDWRDDDTLLFGPEPTGLPQ 106

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     +A +  P+     SLN++ +  + ++E   +
Sbjct: 107 EILDHPRVSAHLRIPMVEGNRSLNLANSAAIGLYEAWRS 145


>gi|260494708|ref|ZP_05814838.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33]
 gi|260197870|gb|EEW95387.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33]
          Length = 150

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+    N   T+L L+ P      EK    +      + +++V+
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTN---TKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +     +   YATT   +                   +   +N  I+FG E  G
Sbjct: 60  ESFEEFLEANKGIRLFYATTKTKQKYC---------------DVKYKKNDYIMFGPESRG 104

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145


>gi|290967916|ref|ZP_06559466.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782055|gb|EFD94633.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 161

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWN--FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I++V+P++  N G VAR           L LV P      +K    +      +  V+V 
Sbjct: 3   IVMVEPEIPGNTGNVARLCAANHM---TLHLVKPLGFSLEDKYLKRAGLDYWPLVDVQVH 59

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N+ + +A    H +Y  T ++R  +  +   ++                + FG+E  GL
Sbjct: 60  ENVADVMAKYAGHAMYYLTTKSRQCYADISFTEDDL--------------LFFGKETKGL 105

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +          P+     SLN+S +V ++ +E +  
Sbjct: 106 PESMLKEHPERCFRIPMIEAARSLNLSNSVAIVAYEALRQ 145


>gi|172035635|ref|YP_001802136.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171697089|gb|ACB50070.1| probable tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 153

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 12/158 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P ++LV+PQ+  N G +AR     N T+L LV P     S++    +         V++ 
Sbjct: 2   PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRA--GLDYWPHVKLQ 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L   +          A ++     +L                ++  ++FG E  GL  
Sbjct: 59  YHLD--LEQFQ------AYHQQQKGRLLGFSVRGKSCYGDCQFKEDDWLVFGSETEGLPP 110

Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
                 + ++  P+ +P   SLN+S +V + ++E +  
Sbjct: 111 TFQDQCDQMLYIPMPHPEVRSLNLSVSVAIGLFEALRQ 148


>gi|15835441|ref|NP_297200.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270289632|ref|ZP_06195934.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
 gi|301337018|ref|ZP_07225220.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
 gi|8163329|gb|AAF73607.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 151

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73
            I+L +P + +N G + R        +L LV P     ++K    +       D  S+ V
Sbjct: 2   RIVLHNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWDRLSLSV 58

Query: 74  FSNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +L+EA+  +    I+  T +  + +     P +                 IFG E  G
Sbjct: 59  VDSLEEALRGIPREKIFCLTTKGSSYYGERELPLDG--------------TYIFGAESRG 104

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    + A S+  +  P+     SLN++ +V ++++E    
Sbjct: 105 LPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|310778265|ref|YP_003966598.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
 gi|309747588|gb|ADO82250.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
          Length = 150

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 30/165 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L++P++  N G + R+    N   T L L+ P      EK    +       +SV + 
Sbjct: 3   IVLLNPEIPYNTGNIGRSCVLTN---TSLHLIKPMGFSLDEKQVKRA--GLDYWNSVDLH 57

Query: 75  --SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +L+E I    D +F +ATT   +                   +   +N  I+FG E 
Sbjct: 58  TWDSLEELIKANPDSNFYFATTKTKKKYS---------------DVKYEKNDFIVFGPES 102

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+  EEI  +N    I+ P+  +  SLN+S +  ++++E +  +
Sbjct: 103 RGVP-EEILEANKENCITIPMIKMGRSLNLSNSAAIILYEALRQT 146


>gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
          Length = 190

 Score = 78.6 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  V R+     L  + LV   + WP E +R SSA+A   +D VR   +++     L
Sbjct: 22  PHNISAVLRSCDAVGLLTVHLVYTIEEWP-ELSRVSSASAVKWLDIVR-HESIEACYQAL 79

Query: 85  H----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                 IYAT  +A +R+ +   L                  V ++FG E  G+++E +A
Sbjct: 80  RAQGFTIYATHLSAASRDLYDLDLT---------------GPVALVFGNEHRGVSDEAVA 124

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
            ++  +  P+  +  SLNIS A  + ++E +         +  + +    +  L+ +L  
Sbjct: 125 NADGSVVIPMMGMVQSLNISVACAVSLYEALRQRRAVGAYDRPKLSAEERQARLVRWLQR 184

Query: 199 LEISLE 204
               LE
Sbjct: 185 ERRVLE 190


>gi|298505309|gb|ADI84032.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter
           sulfurreducens KN400]
          Length = 164

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 24/171 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV+P++  N G +AR       T L LV  + G+ ++      A  D   +  +R + 
Sbjct: 9   IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAGLDYWSEVDIRYWE 66

Query: 76  NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +L +   A  D  F Y T+ +              A          +   I+FG+E  GL
Sbjct: 67  SLDQLRQAWPDARFFY-TSKK--------------AARCYVDAGFHEGDFIVFGKETVGL 111

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             E++  +N    +  P+     SLN+S A  ++++E +  +   +++  +
Sbjct: 112 P-EDLLQANEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQTGRLADRASE 161


>gi|89094922|ref|ZP_01167853.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum
           sp. MED92]
 gi|89080788|gb|EAR60029.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum
           sp. MED92]
          Length = 156

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 21/169 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N     L LV P      +K    +        +V++  +
Sbjct: 4   VVLFEPEIPPNTGNIIRLCANTGFH-LHLVEPLGFELDDKRLRRAGLDYHEFAAVKIHPD 62

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+  ++ +    ++A T + R +               E  F   +V ++ G E  GL  
Sbjct: 63  LETCLSQIEPRKVWALTTKGRTSH-------------VEADFQAGDV-LLLGPETRGLP- 107

Query: 135 EEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           EE+ ++      +  P+     SLN+S A  ++V+E       +    V
Sbjct: 108 EEVRMTIPQGEWLRMPMKADSRSLNLSNACAIVVYEAWRQLDFAGAAEV 156


>gi|329895795|ref|ZP_08271171.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC3088]
 gi|328922157|gb|EGG29514.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC3088]
          Length = 158

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P++  N G + R   N    +L LV P      EK    +      I  V    N
Sbjct: 4   VVLFEPEIPPNTGNIMRLCANTGC-ELHLVEPLGFSLDEKRLRRAGMDYRDISVVTSHRN 62

Query: 77  LKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +E +      +    ++A T +                  + +        I+ G E  
Sbjct: 63  WEECLHAIRVKSPSTRVFACTTK--------------GSQAHTKAVFQSGDIILMGPETR 108

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    I    +   I  P+ P   SLN+S A  ++++E +  +
Sbjct: 109 GLPINIIESTPAEYRIRIPMAPESRSLNLSNATAVILYEALRQT 152


>gi|187922547|ref|YP_001894189.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           phytofirmans PsJN]
 gi|187713741|gb|ACD14965.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           phytofirmans PsJN]
          Length = 156

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A      +  +  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKLRRAG-LDYHEYAQMNVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++    +A    D   ++A T R    F       E A    +          +FG E  
Sbjct: 61  ADWAAFVAKESPDPARMFAFTTRGSGRFH------EHAFQSGDW--------FVFGAETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL +  +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPDSVLDQFANQQRVRLPMRPGNRSLNLSNTVAIVVFEAWRQT 150


>gi|322373881|ref|ZP_08048416.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
 gi|321277253|gb|EFX54323.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
          Length = 184

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 17/160 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G +AR     N + L ++ P      +K    +       D + +  +
Sbjct: 21  IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 77

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL + ++          +N+     ++         +E    G++   +FGRE  GL  
Sbjct: 78  DNLADFMS----------KNQQGRLHLVTKFADKTYSDEVYDDGKDHYFMFGREDTGLPE 127

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E +   +   I  P+N     SLN+S  V ++V+E +   
Sbjct: 128 EFMREHAEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 167


>gi|213023090|ref|ZP_03337537.1| putative RNA methyltransferase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 60

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 15 PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            I+LV P   ENIG  ARAM     T LR+V+ +        R  +  +  +ID++ V
Sbjct: 3  VTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQ-AHLEPATRWVAHGSGDIIDNIEV 60


>gi|77919053|ref|YP_356868.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380]
 gi|77545136|gb|ABA88698.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380]
          Length = 156

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVF 74
           I+LV+P++  N G +AR       T L LV  + G+  +      A  D   VID VR +
Sbjct: 8   IVLVEPEIPPNTGNIARLCGATG-TILHLVG-KLGFSLDDRYLKRAGLDYWEVID-VRRW 64

Query: 75  SN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L+EA  D  + Y +    R++  +   P +                I+FG+E  G
Sbjct: 65  ESLQQLEEAFPDGRWWYTSKKAERSHVGADFQPGDF---------------IVFGKETAG 109

Query: 132 LTNEEIAL--SNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
           L  + +A   ++  I  P+ +P   SLN+S A  ++++E +  +
Sbjct: 110 LPADLLARNPAH-CIRIPIFSPRVRSLNLSTAAGIVLYEALRQT 152


>gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
 gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
          Length = 300

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+L       N+G +AR+  +     + + N R  + +     SSA A   I   +V +
Sbjct: 110 IIVLDHITDAGNLGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQV-A 168

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL++A+          AR +N    V    E A           NV ++ G E  GL   
Sbjct: 169 NLQQAL----------ARLKNEGYWVAGASEKAEGGIWDANLTGNVCLVMGNENTGLARL 218

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                +  +S P   +  SLN++Q+  + ++E +  + +S ++
Sbjct: 219 TQEACDFFVSLPQRGVVSSLNVAQSATVCMYEWLRQNRLSLQE 261


>gi|21241004|ref|NP_640586.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|294665610|ref|ZP_06730889.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21106293|gb|AAM35122.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|292604613|gb|EFF47985.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 158

 Score = 78.6 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +    +V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLQVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L  A+A +    ++A + R+          +       +          +FG E  GL
Sbjct: 65  ADLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +        +  P+ P   SLN+S  V +MV+E       +  +
Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158


>gi|291549085|emb|CBL25347.1| Predicted rRNA methylase (SpoU class) [Ruminococcus torques L2-14]
          Length = 164

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 24/176 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P     +EK+   +         + V   
Sbjct: 4   IVLYEPEIPANTGNIGRTCVATG-TRLHLIEPLGFKLNEKSLKRA--GMDYWKDLDVTTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E         ATT  ++        P                  I+FG+E  G
Sbjct: 61  IDYQDFLEKNPGAKIYMATTKAHKVYTDVEYEPDCY---------------IMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           +  E +       +  P+N    SLN+  +V ++++E +  +  +      E +  
Sbjct: 106 IPEEILVEHEEDCMRIPMNGDIRSLNLGNSVAIVLYEALRQNGFAGMNLSGELHEL 161


>gi|237744927|ref|ZP_04575408.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229432156|gb|EEO42368.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 150

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+    N   T+L L+ P      EK    +      + +++V+
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTN---TKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +     +   YATT   +                   +   +N  I+FG E  G
Sbjct: 60  ESFEEFLEANKGIRLFYATTKTKQKYC---------------DVKYEKNDYIMFGPESRG 104

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVVILYEAYRQ 145


>gi|282877999|ref|ZP_06286807.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
 gi|281299834|gb|EFA92195.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
          Length = 168

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 10/162 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             V++L D +   N+G V R+   F +  + L       P  +   ++   +  +D  R 
Sbjct: 16  PLVVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGEDSVDW-RY 74

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGL 132
           F++  +A+ DL        R R      +     +  L    +   Q   ++FG E  G+
Sbjct: 75  FASATQAVEDL--------RERGYCVYAIEQVVGSTKLQHLSVDRSQRYAVVFGNEVKGV 126

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             + +   +  +  P      SLN+S    ++VWE  +  ++
Sbjct: 127 HQDTVDACDGCLEIPQFGTKHSLNVSVTAGIVVWEFAQKLLL 168


>gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424]
 gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG
           19424]
          Length = 156

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++  N G V R   N    QL LV P  G+P + AR   A      +    RV 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLDDARMRRAG-LDYHEYATMRVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +    +A    D   ++A T R    F  V   P +                 +FG E 
Sbjct: 61  DSWDALMASEQPDPTRMFALTTRGSTPFGQVAFRPGDW---------------FVFGSET 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL+ E  E       I  P+ P   SLN+S  V ++V+E    
Sbjct: 106 RGLSPERREWFPPAQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|160942978|ref|ZP_02090216.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445672|gb|EDP22675.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
           M21/2]
          Length = 168

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++ +N G VAR        +L LV P      +K    +         + +   
Sbjct: 9   IVLVEPRIPQNTGNVARTCACTAC-RLHLVGPMGFAIDDKKLKHA--GLDYWHYLDI--T 63

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             + +AD        ARN             A      +       ++FGRE  GL    
Sbjct: 64  YYDGLADFF------ARNNG---PYYYFTTKAPQRYTDVQYPDGAYLVFGREDAGLPEAL 114

Query: 137 IALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  +       P+     SLN+S +V + V+E +   
Sbjct: 115 LVENQEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQW 151


>gi|86147915|ref|ZP_01066220.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222]
 gi|218710836|ref|YP_002418457.1| tRNA/rRNA methyltransferase [Vibrio splendidus LGP32]
 gi|85834342|gb|EAQ52495.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222]
 gi|218323855|emb|CAV20216.1| Hypothetical tRNA/rRNA methyltransferase [Vibrio splendidus LGP32]
          Length = 159

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V+   N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  +  L        R  +        K     ++ +   G    ++FG E  GL  E 
Sbjct: 63  LEAFLEYLE-----NEREGDFRIFACTTKTTGHHVDAKFQQGD--VLMFGPETRGLPAEF 115

Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 116 IESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|257462965|ref|ZP_05627369.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060582|ref|ZP_07925067.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313686258|gb|EFS23093.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 152

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 34/166 (20%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-- 72
           I+L  P++  N G + R+    N   T L L+ P      EK    S        SV+  
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTN---THLHLIKPLGFSLDEKQIRRS--GLDYWHSVKLT 57

Query: 73  VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ + +E +A   ++   YATT   +                   +   +N  I+FG E 
Sbjct: 58  IWESFEEFLASDPEMRLFYATTKTKQKYS---------------DVRYQENDYIMFGPES 102

Query: 130 WGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  + +          I+ P+ P+  SLN+S +  ++++E +  
Sbjct: 103 RGIPEDILKQDPERC---ITIPMIPMGRSLNLSNSAAIILYEALRQ 145


>gi|224104027|ref|XP_002313287.1| predicted protein [Populus trichocarpa]
 gi|222849695|gb|EEE87242.1| predicted protein [Populus trichocarpa]
          Length = 264

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 20/186 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++  + K   ++LV PQ+  N G +AR     ++  L LV P      +     +     
Sbjct: 74  EVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSVG-LHLVGPLGFQVDDAKLKRA--GLD 130

Query: 67  VIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                 V+V  +  E   D         R +   K +LA  +     +      +   ++
Sbjct: 131 YWPYVVVKVHDSWAE-FQDYF-------RQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLV 182

Query: 125 FGRERWGLTNEEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSE 177
           FG E  GL  E +           +I  P+   +   LN+S +V + ++E          
Sbjct: 183 FGSETSGLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQL 242

Query: 178 KNVKEQ 183
           +   E 
Sbjct: 243 QFPSED 248


>gi|297584847|ref|YP_003700627.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297143304|gb|ADI00062.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           selenitireducens MLS10]
          Length = 163

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           ++L +P++  N G +AR        + L L++P      ++    +        SV+V  
Sbjct: 5   VVLYEPEIPANTGNIARTCA--GTHSHLHLIHPLGFSTDDRMLKRAGC--DYWPSVKVEH 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +              +      F  +    E  +   +     Q+   +FG+E  GL 
Sbjct: 61  HDSFDALY---------SRYPEGAFYFIETIGEKNVYDFDYSDPDQDYFFVFGKETTGLP 111

Query: 134 NEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            E  A         P   L  SLN+S    ++V+E +     + 
Sbjct: 112 GELTARFEEHCFRIPQTDLVRSLNLSNTAAIVVYEALRQQAFAP 155


>gi|78045792|ref|YP_361967.1| TrmH family tRNA methyltransferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925841|ref|ZP_08187210.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118]
 gi|78034222|emb|CAJ21867.1| tRNA/rRNA methyltransferase, SpoU class; TrmH family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325543672|gb|EGD15086.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118]
          Length = 158

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +    +V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLQVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L  A+A +    ++A + R+          +       +          +FG E  GL
Sbjct: 65  TDLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +        +  P+ P   SLN+S  V +MV+E       +  +
Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158


>gi|154148507|ref|YP_001406799.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
 gi|153804516|gb|ABS51523.1| RNA methyltransferase, TrmH family [Campylobacter hominis ATCC
           BAA-381]
          Length = 161

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 26/169 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV PQ+ +N G + R   N NL +L +V P      EK+   +          +  ++
Sbjct: 4   IVLVHPQIPQNTGAIGRLCINANL-KLHIVKPTIFSLDEKSVRRA--GLDYWKKLNPTIW 60

Query: 75  SNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +L + +A        F ++TT   R  F                    ++  I FG E 
Sbjct: 61  DSLDDFMAANGDKISRFWFSTTKSKRLYF---------------TADFKKDDFIFFGGES 105

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            GL    +  +    I+ P+     SLN++ +V ++ +E +  +I + E
Sbjct: 106 TGLPMNFMQKNWQNAITIPMGNEGRSLNLAMSVGIVAYEAIRQNIGAFE 154


>gi|330444101|ref|YP_004377087.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
 gi|328807211|gb|AEB41384.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
          Length = 152

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P + +N G + R        +L LV P      +K    +       + +  RV 
Sbjct: 3   VILFSPDIPQNTGNIGRTCVALG-AELILVRPLGFSLLDKFVKRA--GMDYWEKLKLRVV 59

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L+EA+ D     ++  + + +  +     P                   +FG E  GL
Sbjct: 60  DSLEEALQDTEKKQLFFLSTKGKKYYAHASLP--------------LKGTFVFGSESKGL 105

Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             E +   +      P+     SLN++  V ++++E +  +  +
Sbjct: 106 PQEVLNAYHEQCYFVPMLQGTRSLNLATTVGIVLYEVIRQNYAN 149


>gi|217969958|ref|YP_002355192.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
 gi|217507285|gb|ACK54296.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
          Length = 170

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G V R   N    +L LV P     S+K  + +      +  + V  +
Sbjct: 16  IVLYQPEIPPNTGNVIRLAANTGC-RLHLVAPLGFDLSDKQLARAGLDYHDLTCLTVHPD 74

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                E +A       +T  +R + +    P +                ++FG E  GL 
Sbjct: 75  WAHCREVLAGRRMFAMSTRASRRHDRVDFQPGD---------------ALLFGPESRGLP 119

Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E +        +  P+ P   S+N+S AV ++V+E    
Sbjct: 120 EEILREFAPERRVRIPMRPTNRSVNLSNAVAVVVYEGWRQ 159


>gi|315637042|ref|ZP_07892265.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
 gi|315478578|gb|EFU69288.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
          Length = 154

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 32/170 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLT-QLRLVNPR-DGWPSEKARSSSANADCVIDSVRVF 74
           I+L++P++  N+G + R    F L  +L L+ P   G  +EK    +         + VF
Sbjct: 4   IVLLEPRIPGNVGTIGRLC--FALNCKLHLIKPYGFGEITEKEVRRA--GLDYWYDLEVF 59

Query: 75  SNLKEAIADL--------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
               E I D             ATT             K   +  + +   G      FG
Sbjct: 60  EY--ENIEDFWSKNPFNDRHFLATT-------------KTKNVYFDAKFNVGDY--FYFG 102

Query: 127 RERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           RE  GL  + ++ S +  I+ P+     SLNI+ +V ++ +E +  +  S
Sbjct: 103 REDAGLPEDLLSKSSHTCITIPMTNEARSLNIANSVSIVAYEALRQNFTS 152


>gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 176

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L++P++  N G +AR+    N T+L L+ P     SEK    +  A    + +   V+
Sbjct: 3   IVLLEPEIPANTGNIARSCVATN-TRLHLIEPLGFRISEKHIKRA--AMDYWEKLDYTVY 59

Query: 75  SNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           S++ +       A  H  +ATT  +    +    P +                I+FG+E 
Sbjct: 60  SDINDFYEKNPAAREHMYFATTKAHHTYKEVSFNPDDY---------------IMFGKES 104

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  E +    +  I  P+     SLN+S +V ++++E +  
Sbjct: 105 AGIPEEILSENEDGCIRIPMWGDIRSLNLSNSVAIILYEALAQ 147


>gi|149925625|ref|ZP_01913889.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
 gi|149825742|gb|EDM84950.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
          Length = 156

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 23/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N  + QL LV P  G+P E AR   A  D     ++ V  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGV-QLHLVEPL-GFPLEDARMRRAGLDYHEYANMLVHP 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +  +     +    +A T + +++   V            +  +G    ++FG E  G
Sbjct: 62  GWEAFLDRQQPNPQRCFAMTTKGKHSPFDV------------KFQAGDY--LMFGSETRG 107

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+ E          +  P+ P   SLN+S +V +MV+E    
Sbjct: 108 LSEEVRNWFARENWLRLPMRPESRSLNLSNSVAVMVYEAWRQ 149


>gi|303256290|ref|ZP_07342306.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales
           bacterium 1_1_47]
 gi|330998987|ref|ZP_08322712.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella
           excrementihominis YIT 11859]
 gi|302861019|gb|EFL84094.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales
           bacterium 1_1_47]
 gi|329575729|gb|EGG57255.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella
           excrementihominis YIT 11859]
          Length = 156

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G + R   N    +L L+ P      +K    +       +    + F
Sbjct: 4   IVLVHPEIPPNTGNIIRLSANTGC-KLYLIEPLGFNFEDKHMKRA--GLDYWEYADIKRF 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            + +  +     D   ++A T +              A  L + +        +FG E  
Sbjct: 61  PSYEAFLEAEKPDRDRMFAMTTK--------------AQQLVQEVSFKPGDWFVFGSEGS 106

Query: 131 GLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL  E  AL +   ++  P+ P   SLN+S +V + V+E    
Sbjct: 107 GLPQEVRALFDPAHMVRLPMRPNNRSLNLSNSVAITVYEAWRQ 149


>gi|157737324|ref|YP_001490007.1| RNA methylase [Arcobacter butzleri RM4018]
 gi|157699178|gb|ABV67338.1| RNA methylase, SpoU family [Arcobacter butzleri RM4018]
          Length = 154

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 32/170 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLT-QLRLVNPR-DGWPSEKARSSSANADCVIDSVRVF 74
           I+L++P++  N+G + R    F L  +L L+ P   G  +EK    +         + VF
Sbjct: 4   IVLLEPRIPGNVGTIGRLC--FALNCKLHLIKPYGFGEITEKEVRRA--GLDYWYDLEVF 59

Query: 75  SNLKEAIADL--------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
               E I D             ATT             K   +  + +   G      FG
Sbjct: 60  EY--ENIEDFWSKNPFNDRHFLATT-------------KTKNVYFDAKFNVGDY--FYFG 102

Query: 127 RERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           RE  GL  + ++ S +  I+ P+     SLNI+ +V ++ +E +  +  S
Sbjct: 103 REDAGLPEDLLSKSSHTCITIPMTNDARSLNIANSVSIVAYEALRQNFTS 152


>gi|226939034|ref|YP_002794105.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226713958|gb|ACO73096.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 154

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVF 74
            ++L +P++  N G + R   N    +L LV P  G+P E AR   A  D    +   V 
Sbjct: 3   AVVLFEPEIPPNTGNIIRLCANTGC-ELHLVEPL-GFPLEDARLRRAGLDYHEYAALTVH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N     +A+     +  TT  +R  F    AP +                ++FG E  G
Sbjct: 61  KNWAACRQALVGRRMLAMTTRSSRPAFALAFAPGDV---------------LVFGPESRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  E +A    +  +  P+ P   S+N+S AV + V+E       +  
Sbjct: 106 LPAEVLADFADSERLRLPMLPGQRSMNLSNAVAVTVFEAWRQQGFAGA 153


>gi|188532254|ref|YP_001906051.1| putative tRNA/rRNA methyltransferase YibK [Erwinia tasmaniensis
           Et1/99]
 gi|188027296|emb|CAO95139.1| rRNA methyltransferase CspR (SpoU class) [Erwinia tasmaniensis
           Et1/99]
          Length = 157

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        ++R  ++
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +         +A +   R  F   L  K           +G    ++FG E  GL    
Sbjct: 63  YE--------AFAASETPRRLF--ALTTKGTPAHSAVSYQAGDY--LLFGPETRGLPARV 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|317063710|ref|ZP_07928195.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689386|gb|EFS26221.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 158

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 24/166 (14%)

Query: 13  KGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           K   I+L+ P++  N G + R   + N   T L L+ P      EK    +      +  
Sbjct: 5   KKLNIVLLYPEIPYNTGNIGRSAVLTN---TTLHLIKPLCFSLDEKQLKRAGLDYWHLVD 61

Query: 71  VRVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++V+ + ++ I    D    YATT   +                   I  G+N  ++FG 
Sbjct: 62  LKVWESYEDFINGNPDAVIYYATTKTKQKYT---------------DIKFGKNDFVMFGP 106

Query: 128 ERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+  + +   ++  I+ P+  +  SLN+S +  ++++E +  +
Sbjct: 107 ESRGIPEDILNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQT 152


>gi|15605269|ref|NP_220055.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789277|ref|YP_328363.1| rRNA methylase [Chlamydia trachomatis A/HAR-13]
 gi|237802969|ref|YP_002888163.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804891|ref|YP_002889045.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311358|ref|ZP_05353928.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           6276]
 gi|255317659|ref|ZP_05358905.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           6276s]
 gi|255348917|ref|ZP_05380924.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           70]
 gi|255503457|ref|ZP_05381847.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           70s]
 gi|255507136|ref|ZP_05382775.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           D(s)2923]
 gi|3328978|gb|AAC68142.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
 gi|76167807|gb|AAX50815.1| rRNA methylase, SpoU family [Chlamydia trachomatis A/HAR-13]
 gi|231273191|emb|CAX10104.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274203|emb|CAX10997.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525585|emb|CBJ15063.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           Sweden2]
 gi|296435145|gb|ADH17323.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis E/150]
 gi|296438865|gb|ADH21018.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis E/11023]
 gi|297748670|gb|ADI51216.1| rRNA methylase, SpoU family [Chlamydia trachomatis D-EC]
 gi|297749550|gb|ADI52228.1| RRNA methylase, SpoU family [Chlamydia trachomatis D-LC]
          Length = 151

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73
            I+L +P + +N G + R        +L LV P     ++K    +       +  S+ V
Sbjct: 2   RIVLHNPDIPQNTGNIGRTCVALG-AELILVRPLGFSLADKFVKRA--GMDYWERLSLSV 58

Query: 74  FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +L+EA+  +    I+  T +  + +     P +                 IFG E  G
Sbjct: 59  VDSLEEALLGVPKERIFCLTTKGSSYYGERELPLDG--------------TYIFGAESKG 104

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    + A S+  +  P+     SLN++ +V ++++E    
Sbjct: 105 LPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|319945283|ref|ZP_08019545.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319741853|gb|EFV94278.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 183

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 23/182 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVFS 75
           ++LV P++  N G V R   N     L L+ P  G+P + A+   A  D    +   V  
Sbjct: 4   VVLVQPEIPPNTGNVIRLCANTGCA-LHLIEPL-GFPIDHAKMRRAGLDYHEFTAITVHK 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------LNERIFSGQNV-------- 121
           N    +  +    A  + +         P   A        L     SG           
Sbjct: 62  NWAAFLDSMRASMAAASGSYPQAAPSQTPHSNARQIPFSGRLYGLSTSGHKSPYDHRFLP 121

Query: 122 --GIIFGRERWGLTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              ++FGRE  GL  +++  S   + ++  P+ P   SLN+S AV + V+E         
Sbjct: 122 GDCLVFGRETSGLP-DDVQDSLGTDHLLRLPMRPHNRSLNLSNAVAVTVFEAWRQQGFEG 180

Query: 177 EK 178
             
Sbjct: 181 AA 182


>gi|238028709|ref|YP_002912940.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877903|gb|ACR30236.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia glumae
           BGR1]
          Length = 156

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 27/171 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L LV P  G+P E A+   A      +  R  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLVEPL-GFPLEDAKLRRAG-LDYHEYARMHVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            + +  +A    D   ++A T R    F   V  P +                 +FG E 
Sbjct: 61  RDWEALLAAEQPDPARMFAFTTRGSGRFHDRVFRPGDW---------------FVFGAET 105

Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            GL    +A       +  P+ P   SLN+S  V ++V+E    +     +
Sbjct: 106 RGLGEAMLARFPDEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQAGFEGGE 156


>gi|261378516|ref|ZP_05983089.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC
           14685]
 gi|269145065|gb|EEZ71483.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC
           14685]
          Length = 154

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 23/168 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+L  P++  N G + R   N     L L+ P  G+P + A+   A  D     S+ V 
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLIKPL-GFPLDSAKMKRAGLDYHEFASLTVH 60

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N  +   A+A    I+A T   +   +      +   VL            +FG E  G
Sbjct: 61  ENFDDCLKALAG-RRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRG 105

Query: 132 LTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  + +    A+     P+ P   S+N+S  V ++++E       S  
Sbjct: 106 LPADILDSLPAVQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYSGG 153


>gi|257469466|ref|ZP_05633558.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 152

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 24/162 (14%)

Query: 17  IILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L+ P++  N G + R   + N   T L L+ P      EK    +      +  ++V+
Sbjct: 3   IVLLYPEIPYNTGNIGRSAVLTN---TTLHLIKPLCFSLDEKQLKRAGLDYWHLVDLKVW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + ++ I    D    YATT   +                   I  G+N  ++FG E  G
Sbjct: 60  ESYEDFINGNPDAVIYYATTKTKQKYT---------------DIKFGKNDFVMFGPESRG 104

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  + +   ++  I+ P+  +  SLN+S +  ++++E +  +
Sbjct: 105 IPEDILNRNADHCITIPMIDMGRSLNLSNSAAIILYEALRQT 146


>gi|223040777|ref|ZP_03611044.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
 gi|255322371|ref|ZP_05363517.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
 gi|222877967|gb|EEF13081.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
 gi|255300744|gb|EET80015.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
          Length = 159

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 28/170 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV PQ+ +N G + R   N NL +L ++ P     SEKA   +          +  ++
Sbjct: 4   IVLVHPQIPQNTGSIGRMCVNANL-KLHIIKPTVFDISEKAVRRA--GLDYWARLNPVIW 60

Query: 75  SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +L E +      +  F YATT             K            G    + FG E 
Sbjct: 61  ESLDEFLHANAQFEDRFFYATT-------------KAHKFYFEAEFKKGD--FLFFGGES 105

Query: 130 WGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            GL  E +    +NAI   P+     SLN++ +  ++ +E +  +   S 
Sbjct: 106 TGLPMELMERNFANAI-KIPMGEHGRSLNLATSAGIIAYEAIRQNFAQSG 154


>gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           5521]
 gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           5521]
 gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 277

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           ++IL + +   N+G +AR    F +  + +   R    +     SS  A   +   +V  
Sbjct: 130 IVILDEVEDPHNLGSIARTAELFGVHGIIIPKRRSASVTATVYKSSVGAIEHVKVAKVNN 189

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             S ++E      +IY    R       V                     ++ G E  G+
Sbjct: 190 INSTIEELKEKGVWIYGADIRAEEYSHEVDY--------------SGPCALVIGNEGRGM 235

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   +   + +I  P+     SLN S A  +M++E ++  
Sbjct: 236 SKLTVQKCDKLIKIPMVGKINSLNASVAGGIMMYEVLKGR 275


>gi|332703269|ref|ZP_08423357.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553418|gb|EGJ50462.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 151

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L  PQ+  N G +AR       T L L+ P      ++    +       + VRV   
Sbjct: 3   IVLYQPQIPPNTGSIARLCAATG-TPLHLIEPLGFSIDDRHLKRA--GLDYWEHVRVKVW 59

Query: 75  ----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
               + L  A      + AT AR          P       ++         ++ G E  
Sbjct: 60  PDWQAYLDSAQP--TRLVATCARFG-------TPHHEFSFASDD-------ALVLGPEAT 103

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL    I     ++  P+     SLN++ A  ++++E    +     +
Sbjct: 104 GLPMRIIESIPQLVRIPIWGQVRSLNLANAASVLLYEAYRQTGALQGR 151


>gi|291042902|ref|ZP_06568643.1| spoU protein [Neisseria gonorrhoeae DGI2]
 gi|293398088|ref|ZP_06642293.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae
           F62]
 gi|291013336|gb|EFE05302.1| spoU protein [Neisseria gonorrhoeae DGI2]
 gi|291611351|gb|EFF40421.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae
           F62]
          Length = 157

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+L  P++  N G + R   N     L LV P  G+P + A+   A  D     S+ V 
Sbjct: 6   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVH 63

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N  + +  L    I+A T   +   +      +   VL            +FG E  GL
Sbjct: 64  ENFDDCLKSLAGRRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRGL 109

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 110 PADILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 150


>gi|283769368|ref|ZP_06342267.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia
           extructa W1219]
 gi|283104025|gb|EFC05409.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia
           extructa W1219]
          Length = 172

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L +P++  N G + R    F++ +L L+ P      EK    +       ++V     
Sbjct: 4   IVLFEPEIPGNTGNIMRTCAAFHM-KLHLIEPLGFHLDEKHLKRA--GMDYRENVDYVKH 60

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +  +   +    Y  T   ++   S + PK+            Q + ++FG+E  G
Sbjct: 61  INWDSFFQEHGNQGLFYYVTRYGKHTPDSFMYPKD------------QEIYLVFGKESTG 108

Query: 132 -----LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
                L N E    +  +  P+     SLN+S  V L  +E       S   + +
Sbjct: 109 IPKPILANHE----DFCMRIPMVEKARSLNLSNCVALCAYEVNRQWGYSGLSHTE 159


>gi|254303831|ref|ZP_04971189.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324023|gb|EDK89273.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 150

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+     LT   L L+ P      EK    +      +  ++V+
Sbjct: 3   IVLYQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +     +   YATT   +                   +   ++  I+FG E  G
Sbjct: 60  ESFEEFLEANKGIRIFYATTKTKQKYS---------------DVKYKEDDYIMFGPESRG 104

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +   S   I+ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEDILNKNSERCITIPMIPMGRSLNLSNSAVIILYEAYRQ 145


>gi|190572279|ref|YP_001970124.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190010201|emb|CAQ43809.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 159

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N+A    +IL  P++  N G V R   N    QL LV P      +K    +        
Sbjct: 2   NAAPQFHVILFQPEIPPNTGNVIRLCANTG-AQLHLVEPLGFALEDKQLKRAGLDYHEYS 60

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            ++V  +L  A+A            R   K + A    A V  + +        +FG E 
Sbjct: 61  RLQVHPDLDTALA------------RIAPKRLFALSTRASVRYDSVAFEDGDAFLFGPES 108

Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            GL  + +        +  P+ P   SLN+S  V ++++E       +   
Sbjct: 109 RGLPQDVLDALPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQHGFAGGA 159


>gi|294139011|ref|YP_003554989.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293325480|dbj|BAJ00211.1| RNA methyltransferase, TrmH family, group 2 [Shewanella violacea
           DSS12]
          Length = 154

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N    QL L+ P      EK    +       D   V   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRA--GLDYADLTCVTRY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +  EA+     +  TT  +R +                 +   ++  ++FG E  G
Sbjct: 61  KDFPSFLEAMDGKRIMACTTKGSRPHS---------------ELSFKKDDVLLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E I     +  +  P+  +  SLN+S AV ++ +E    
Sbjct: 106 LPMEIIESLPTSQRLKIPMAGMSRSLNLSNAVAIISYEAWRQ 147


>gi|307244027|ref|ZP_07526146.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492551|gb|EFM64585.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 156

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 28/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV+P++  N G + R   N     L LV P      +K            D   +  +
Sbjct: 5   IVLVEPEIPHNTGNIIRTCANTG-AILHLVRPLGFSLDDKHLKR--CGLDYWDIADIQYY 61

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            + +E + D H    F ++T                     +  +       ++FG+E  
Sbjct: 62  DSFEE-LEDKHKGAKFFFST---------------INGQKNHTDVKYEDGCFLVFGKETK 105

Query: 131 GLTNEEIAL-SNAIISFPVNPLFPS--LNISQAVLLMVWECMEN 171
           GL  + I    +  I  P+  +  +  LN+S AV ++V+E M  
Sbjct: 106 GLPKDLIEANMDTCIRIPMRGIEGARCLNLSNAVAIVVYEAMRQ 149


>gi|189502158|ref|YP_001957875.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497599|gb|ACE06146.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 177

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +N+ K P+I +L + +   NIG   R    F L ++ L       P  +   ++  A+
Sbjct: 16  EFKNALKIPLILVLDNLRSMHNIGAAFRIADAFLLEKIYLCGITAQPPHREIHKTALGAE 75

Query: 66  C--VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              + + V     L +++                  ++    E+  + + +I S     +
Sbjct: 76  ETVIWEYVPDTYTLLQSLK----------TKGYLIVALEQTDESIPLQSYQINSNNKCAL 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +FG E +G+  E +A  +  +  P +    SLN+S ++ + +WE  +
Sbjct: 126 VFGNEVFGIQEEALAACDLALEIPQHGTKHSLNVSVSMGIAIWELTK 172


>gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 268

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 13/172 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P++  SA+   ++L D     N+G + R+     +    L  PR   P   +A   S
Sbjct: 108 PTVPEVVASARRI-VVLEDIVDHTNVGAIFRSAAGLGVDAAVL-APRCADPLYRRAVKVS 165

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A   +   R+       + DL        R        L P   A+ L E +      
Sbjct: 166 MGAVFTLPYARLTD-WASGLEDL--------RRSGFTLVALTPAADAVPLPEAVHRDGKY 216

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
            ++FG E  GL++  +  ++     P+      SLN++ A  +  +E M ++
Sbjct: 217 ALLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLNVTAAAAIACYELMRSA 268


>gi|332967964|gb|EGK07051.1| RNA methyltransferase [Desmospora sp. 8437]
          Length = 180

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I LV+P++  N G +AR       + L L+ P  G+ +E      +  D      VR + 
Sbjct: 31  ICLVEPEIPNNTGNIARTCAVTG-SVLHLIRPL-GFSTEDKYLKRSGMDYWYKVDVRYYD 88

Query: 76  NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  E  A      F  ATT   R+      + +E  I              +FG+E  GL
Sbjct: 89  SFAEFTASFPGGRFFCATTKAQRSYTS--FSYREGDI-------------FVFGKESKGL 133

Query: 133 TNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             E +    +  I  P+ P+  S N+  +  ++++E +  +
Sbjct: 134 PPEILETYRDTNIRIPMRPVVRSHNLGNSAAIILYEALRQT 174


>gi|241760704|ref|ZP_04758796.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
           SK114]
 gi|241318885|gb|EER55411.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
           SK114]
          Length = 154

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            I+L  P++  N G + R   N     L LV P            +       +  +  V
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLTV 59

Query: 74  FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             N ++ +   +   I+A T   + + +          VL            +FG E  G
Sbjct: 60  HENFEDCLKALEGRRIFALT--TKGSTRPDEVSFRKGDVL------------LFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 106 LPAEVLDSLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQ 147


>gi|322411182|gb|EFY02090.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 181

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N   L ++ P      ++    +       D   VR +
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ I                   +++     +   E     Q    +FGRE  GL  
Sbjct: 76  DSLEDFITQCQ-----------GKLHLISKFADKVYSEETYADDQPHYFLFGREDTGLPE 124

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +   +   +  P+N     SLN+S  V ++V+E +   
Sbjct: 125 AFMREHTEKALRIPMNDDHVRSLNVSNTVCMIVYEALRQQ 164


>gi|37520268|ref|NP_923645.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35211261|dbj|BAC88640.1| gll0699 [Gloeobacter violaceus PCC 7421]
          Length = 162

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 27/182 (14%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M P A       +   ++LVDP++  N G VAR       T L LV       S+K    
Sbjct: 1   MPPAAM----GREAFHVVLVDPEIPPNTGNVARTCAATG-TSLHLVGTLGFQLSDKYLKR 55

Query: 61  SANADCVIDSV--RVFSNLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +       + V      +L   +          T+AR            +    L     
Sbjct: 56  A--GLDYWEHVDLHYHPDLGALLEQQSAQRFVLTSARRGVCLWD--FAFQPGDWL----- 106

Query: 117 SGQNVGIIFGRERWGLTNEEI-ALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIV 174
                  +FG E  GL    +    + +++ P   P   SLN+S AV ++++E +     
Sbjct: 107 -------VFGSESRGLPEGLLSDERHPVVTIPLAEPAVRSLNLSNAVAVVLFESLRQLDP 159

Query: 175 SS 176
            S
Sbjct: 160 PS 161


>gi|50085960|ref|YP_047470.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531936|emb|CAG69648.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 159

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 16/165 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L +P++  N G + R   N    QL LV P      +K    +       +  R  ++
Sbjct: 4   VVLFEPEIPANTGNIIRLCANTG-AQLHLVKPLGFELDDKKLKRA--GLDYHEYARMKIW 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRERWGLT 133
            N+++ +         + +++   +S + P           +   + V ++ G E  GL 
Sbjct: 61  DNIEQCLE--------SLKSQGISESDIFPLTTKGSATPHTVDLNRPVALLMGPETRGLP 112

Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                +      I  P+     SLN+S A  ++V+E         
Sbjct: 113 ESVRFMFPQKNWIRLPMAENSRSLNLSNATAVIVYEAWRQQGFQP 157


>gi|312900033|ref|ZP_07759350.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0470]
 gi|311292790|gb|EFQ71346.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0470]
          Length = 168

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +PQ+  N G +AR     N T L L+ P      +K    +       +  ++   
Sbjct: 5   IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
            +L + +A +                ++               G++   +FG+E  GL  
Sbjct: 62  KDLADFLAHVA----------GKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       I  P+N     SLN+S    L+V+E +   
Sbjct: 112 TFMRENEE-----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQ 151


>gi|59802048|ref|YP_208760.1| hypothetical protein NGO1727 [Neisseria gonorrhoeae FA 1090]
 gi|194099620|ref|YP_002002751.1| SpoU [Neisseria gonorrhoeae NCCP11945]
 gi|239999819|ref|ZP_04719743.1| SpoU [Neisseria gonorrhoeae 35/02]
 gi|240014975|ref|ZP_04721888.1| SpoU [Neisseria gonorrhoeae DGI18]
 gi|240017423|ref|ZP_04723963.1| SpoU [Neisseria gonorrhoeae FA6140]
 gi|240081565|ref|ZP_04726108.1| SpoU [Neisseria gonorrhoeae FA19]
 gi|240113844|ref|ZP_04728334.1| SpoU [Neisseria gonorrhoeae MS11]
 gi|240116578|ref|ZP_04730640.1| SpoU [Neisseria gonorrhoeae PID18]
 gi|240122044|ref|ZP_04735006.1| SpoU [Neisseria gonorrhoeae PID24-1]
 gi|240124341|ref|ZP_04737297.1| SpoU [Neisseria gonorrhoeae PID332]
 gi|240126553|ref|ZP_04739439.1| SpoU [Neisseria gonorrhoeae SK-92-679]
 gi|240129015|ref|ZP_04741676.1| SpoU [Neisseria gonorrhoeae SK-93-1035]
 gi|254494601|ref|ZP_05107772.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260439661|ref|ZP_05793477.1| SpoU [Neisseria gonorrhoeae DGI2]
 gi|268595629|ref|ZP_06129796.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597661|ref|ZP_06131828.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268599912|ref|ZP_06134079.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268602247|ref|ZP_06136414.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268682968|ref|ZP_06149830.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268685133|ref|ZP_06151995.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268687395|ref|ZP_06154257.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|59718943|gb|AAW90348.1| putative tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA
           1090]
 gi|193934910|gb|ACF30734.1| SpoU [Neisseria gonorrhoeae NCCP11945]
 gi|226513641|gb|EEH62986.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268549018|gb|EEZ44436.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551449|gb|EEZ46468.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268584043|gb|EEZ48719.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268586378|gb|EEZ51054.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268623252|gb|EEZ55652.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268625417|gb|EEZ57817.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268627679|gb|EEZ60079.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|317165109|gb|ADV08650.1| hypothetical protein NGTW08_1693 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 154

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+L  P++  N G + R   N     L LV P  G+P + A+   A  D     S+ V 
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVH 60

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N  + +  L    I+A T   +   +      +   VL            +FG E  GL
Sbjct: 61  ENFDDCLKSLAGRRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 107 PADILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147


>gi|126658117|ref|ZP_01729269.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
 gi|126620755|gb|EAZ91472.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
          Length = 153

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 24/164 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P ++LV+PQ+  N G +AR     N T+L LV P     S++    +         V++ 
Sbjct: 2   PRVVLVNPQIPPNTGNIARTCAATN-TELHLVGPLGFELSDRYLKRA--GLDYWPHVKLH 58

Query: 75  SNLK----EAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +L     +A        +   + R ++ +      ++                ++FG E
Sbjct: 59  YHLDLVQFQAYHQQQKGRLLGFSVRGKSCYGDCKFQEDDW--------------LVFGSE 104

Query: 129 RWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
             GL        + ++  P+ +P   SLN+S +V + ++E +  
Sbjct: 105 SEGLPLTFQEQCDQMLYIPMPHPKIRSLNLSVSVAVGLFEALRQ 148


>gi|78184720|ref|YP_377155.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
 gi|78169014|gb|ABB26111.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. CC9902]
          Length = 166

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 30/174 (17%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             + N      + L +P++  N G +AR    F L  L L+ P      +++   +    
Sbjct: 1   MSIVNPEAPLRVALFEPRIPPNTGNIARTCAAFQLP-LSLIEPLGFQIDDRSVRRA--GL 57

Query: 66  CVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                V++     F  +K+ +     I   + R                 L++  F   +
Sbjct: 58  DYWPHVQLSTHGSFEAMKQVLLPQSRIIGCSRRG-------------GSCLSDFEFQHGD 104

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166
           V ++FGRE  GL ++     + I++ P+             SLN+S A  L+ +
Sbjct: 105 V-LLFGREDTGLPDDVRDQCHTIVTIPMPGAADSSGQGGVRSLNLSVACALVTY 157


>gi|240118802|ref|ZP_04732864.1| SpoU [Neisseria gonorrhoeae PID1]
 gi|268604513|ref|ZP_06138680.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268588644|gb|EEZ53320.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
          Length = 154

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+L  P++  N G + R   N     L LV P  G+P + A+   A  D     S+ V 
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAGLDYHEFASLTVH 60

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N  + +  L    I+A T   +   +      +   VL            +FG E  GL
Sbjct: 61  ENFDDCLKSLADRRIFALT--TKGTARPDETAFQKGDVL------------LFGPETRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 107 PADILDSLPAAQKIRLPMRPGSRSMNLSNTVSVILFEAWRQ 147


>gi|160878312|ref|YP_001557280.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160426978|gb|ABX40541.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 166

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           IIL +P++  N G + R       T+L L+ P      EK    +           V V+
Sbjct: 3   IILFEPEIPANTGNIGRTCVATG-TKLHLIEPLGFRLDEKEIKRA--GLDYWKDLDVTVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N  + +             RN    +      A  +   +    +  I+FG+E  G+  
Sbjct: 60  ENYDDFL------------RRNPNAKIYMATTKARHVYTEVSYEPDCFIMFGKESAGIP- 106

Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           EEI L N    I  P+     SLN+S +V ++++E +   
Sbjct: 107 EEILLENKETSIRIPMIGDIRSLNLSNSVAIVLYEALRQQ 146


>gi|260770823|ref|ZP_05879752.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|260614060|gb|EEX39250.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|315178864|gb|ADT85778.1| Predicted rRNA methylase [Vibrio furnissii NCTC 11218]
          Length = 157

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 30/173 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N     L L+ P      EK    +       D  RV   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60

Query: 74  -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                F    EA  D      TT    +              ++ +   G    ++FG E
Sbjct: 61  KDYQAFIAFLEARGDYRIFACTTKTTGH-------------HVDAQFQRGD--VLLFGPE 105

Query: 129 RWGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             GL     E + ++  I   P+ P   SLN+S AV ++ +E          +
Sbjct: 106 TRGLPADLIESLPMAQRI-RIPMMPEARSLNLSNAVAIIAFEAWRQMGFEGAR 157


>gi|85711495|ref|ZP_01042553.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
           baltica OS145]
 gi|85694647|gb|EAQ32587.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
           baltica OS145]
          Length = 154

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L +P++  N G V R   N  + QL L+ P      EK    +      +  V++  N 
Sbjct: 5   VLFEPEIPPNTGNVIRLAANTGM-QLHLIEPLGFDLDEKKVRRAGLDYHALTQVKIHKNW 63

Query: 78  KEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + +   D + I+A T +    +  V                 +N  ++FG E  GL  +
Sbjct: 64  SDFLENVDYNRIFACTTKGSTRYTEV--------------AYEENDVLLFGPETRGLPMD 109

Query: 136 EIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +        +  P+ P   SLN+S +V +  +E    
Sbjct: 110 VLQTFPQENWLRLPMVPDSRSLNLSNSVAIFTYEAWRQ 147


>gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
           20469]
 gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
           20469]
          Length = 338

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           SA   V++L       N G + R+        + + N R       A  +SA A   +  
Sbjct: 185 SANALVVVLDHVTDEGNFGAIVRSAEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPI 244

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +V SNL  A+ +L     +   +T              E A         G  + ++ G
Sbjct: 245 AQV-SNLPRALEELKAAGFWTCGST--------------EHATQSVWEAPMGGRLALVMG 289

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            E  G++   +   +     P      SLN++QA  +M +E +  +  +
Sbjct: 290 SEGSGISRLMLEKCDFTCKLPQFGQVESLNVAQATTVMCYEWLRRTQEA 338


>gi|166710194|ref|ZP_02241401.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 158

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +    +V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYAPLKVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L  A+A +    ++A + R+          +       +          +FG E  GL
Sbjct: 65  VDLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +        +  P+ P   SLN+S  V +MV+E       +  +
Sbjct: 111 PTEVLESIPPQHRLRLPMRPGNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158


>gi|153212559|ref|ZP_01948306.1| rRNA methylase, SpoU family [Vibrio cholerae 1587]
 gi|153825535|ref|ZP_01978202.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2]
 gi|229513615|ref|ZP_04403079.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21]
 gi|229521760|ref|ZP_04411178.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229524673|ref|ZP_04414078.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229527380|ref|ZP_04416772.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           12129(1)]
 gi|254285885|ref|ZP_04960847.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226]
 gi|262190923|ref|ZP_06049138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT
           5369-93]
 gi|124116430|gb|EAY35250.1| rRNA methylase, SpoU family [Vibrio cholerae 1587]
 gi|149740820|gb|EDM54911.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2]
 gi|150424067|gb|EDN16006.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226]
 gi|229335012|gb|EEO00497.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           12129(1)]
 gi|229338254|gb|EEO03271.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229341354|gb|EEO06358.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229349492|gb|EEO14448.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21]
 gi|262033190|gb|EEY51713.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT
           5369-93]
 gi|327485167|gb|AEA79574.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           LMA3894-4]
          Length = 158

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               I  L        R R +F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFIEYLQ-------RERGSFRVFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            IA   +   I  P+ P   SLN+S AV ++ +E          +
Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158


>gi|222151824|ref|YP_002560984.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120953|dbj|BAH18288.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 157

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 62/164 (37%), Gaps = 16/164 (9%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-- 69
                I+L  P++  N G +AR+    + T L L+ P      +K    +          
Sbjct: 1   MSSINIVLYQPEIPANTGNIARSCAATD-TDLHLIRPLGFSTDDKMLRRA--GLDYWKFV 57

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++  + +++E             +N+ ++  +    +      +   + +    IFG+E 
Sbjct: 58  NITYYDSIEEFFE----------KNKGHYYLLTKFGKKPHTTFDYSNTDEKHYFIFGKET 107

Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL +       +  +  P+N    SLN+S    ++++E +   
Sbjct: 108 TGLPDWVKEKYMDTALRIPMNDNVRSLNLSNTAAILIYEALRQQ 151


>gi|330721835|gb|EGG99807.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC2047]
          Length = 154

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +P++  N G + R   N    QL ++ P      +K    +        +V+ + +
Sbjct: 4   IILFEPEIPPNTGNIIRLAANTGC-QLHIIKPMAFEFDDKRLRRAGLDYHEWANVQFYDS 62

Query: 77  LKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
             E   +  +  ++A T +              A              ++FG E  GL  
Sbjct: 63  FAECCDNPAIERVFALTTK--------------ATCSYSETSYQAGDALMFGPESRGLPA 108

Query: 134 --NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + +      +  P+ P   SLN+S +V ++V+E    
Sbjct: 109 NIRDSLPE-QQRLRIPMLPDSRSLNLSNSVAVVVFEAWRQ 147


>gi|329115715|ref|ZP_08244432.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parauberis NCFD 2020]
 gi|326906120|gb|EGE53034.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parauberis NCFD 2020]
          Length = 181

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N   L ++ P      ++    +       D   VR +
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +                +++     +  +     GQ    IFGRE  GL  
Sbjct: 76  DSLDDFLGKVD-----------GQIHLISKFAEKVYSDHNYDDGQAHYFIFGREDKGLPE 124

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E +   S   +  P+N     SLN+S  V ++V+E ++  
Sbjct: 125 EFMREHSEKALRIPMNDEHVRSLNLSNTVCMIVYEALKQQ 164


>gi|307128915|ref|YP_003880931.1| putative rRNA methylase [Dickeya dadantii 3937]
 gi|306526444|gb|ADM96374.1| predicted rRNA methylase [Dickeya dadantii 3937]
          Length = 154

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R   N   + L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRA--GLDYHDLASVSRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  +A+A       TT  +R        P      +           ++FG E  G
Sbjct: 61  RNYQDFLQAVAGRRIFACTTKGSR----PYDEPDYQPGDV-----------LLFGSETAG 105

Query: 132 LTNEEIA-----LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  ++I           I  P+ P   SLN+S +V ++ +E    
Sbjct: 106 LP-DDIRNGFAPECR--IRIPMEPNCRSLNLSNSVAIISYEAWRQ 147


>gi|282896219|ref|ZP_06304242.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
 gi|281198908|gb|EFA73786.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
          Length = 263

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 64/183 (34%), Gaps = 19/183 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     +      G  + L   Q   N+G + R     + + L L N        K   +
Sbjct: 96  MVKRCEENPIPITGLALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRA 155

Query: 61  SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           SA     +   +V  NLK+ + D       + AT       +               ++ 
Sbjct: 156 SAGQWFRLKK-QVSHNLKDTVQDCQRGGMQVVATLPTAELTYW--------------QVD 200

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 I+ G E  GL+++   ++N  +  P++P   SLN++ +  L+++E         
Sbjct: 201 WSLPSLILLGNEGAGLSDDLATMANIQVKIPLSPQVESLNVAISAALILYEAQRQKACGK 260

Query: 177 EKN 179
             N
Sbjct: 261 NTN 263


>gi|221199931|ref|ZP_03572974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2M]
 gi|221207400|ref|ZP_03580409.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2]
 gi|221172603|gb|EEE05041.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2]
 gi|221180170|gb|EEE12574.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2M]
          Length = 156

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    DL  I+A T R  + F      P +                 +FG E  
Sbjct: 62  DWDAFVAAESPDLARIFAFTTRGSSRFHDRAFLPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +    +   +  P+ P   S+N+S  V ++V+E    +
Sbjct: 107 GLPAELLERFPAEQRVRLPMRPGNRSMNLSNTVAVVVFEAWRQA 150


>gi|225077352|ref|ZP_03720551.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
           NRL30031/H210]
 gi|224951344|gb|EEG32553.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
           NRL30031/H210]
          Length = 154

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            I+L  P++  N G + R   N     L LV P            +       +  +  V
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLTV 59

Query: 74  FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             N  + +   +   I+A T +          P E +          +   ++FG E  G
Sbjct: 60  HENFDDCLKALEGRRIFALTTKGSTR------PDEVSFR--------EGDVLLFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 106 LPAEVLDNLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQ 147


>gi|197119687|ref|YP_002140114.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem]
 gi|197089047|gb|ACH40318.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem]
          Length = 158

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 24/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+LV+P++  N G +AR       T L LV  + G+ ++      A        V +   
Sbjct: 9   IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAG-LDYWSEVEIHYW 65

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                LK+A     F+Y T+ +   ++            L      G    I+FG+E  G
Sbjct: 66  PDLPALKQAYPGSRFVY-TSKKAEKSY------------LAFTFLYGD--FIVFGKETKG 110

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           L  E I   +   +  P+     SLN+S +  ++++E +  +  
Sbjct: 111 LPEELIEANAQTSVRIPIPGKVRSLNLSTSAGIVLYEALRQTGA 154


>gi|157373406|ref|YP_001472006.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157315780|gb|ABV34878.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sediminis
           HAW-EB3]
          Length = 154

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N    QL L+ P      EK    +       D  RV   
Sbjct: 4   IALFEPEIAPNTGNIIRLCANNGC-QLHLIEPMGFDLEEKKLRRA--GLDYSDLTRVTRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +   A+     +  TT  +R +               E  +  ++V ++FG E  G
Sbjct: 61  KDFESFLAAMDGKRIMACTTKGSRPHT--------------ELAYEKEDV-LLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E I        +  P+     SLN+S AV ++ +E    
Sbjct: 106 LPIEIIESLPTTQRLKIPMTANSRSLNLSNAVAIISYEAWRQ 147


>gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
 gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
          Length = 157

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        ++R  ++
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPMGFPWDDKRLRRAGLDYHEFANIRRHAD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               IA              N + + A        +  +       ++FG E  GL  E 
Sbjct: 63  YAAFIA------------SENPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPAEI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 111 LEALPAQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQ 147


>gi|322390062|ref|ZP_08063597.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
 gi|321143189|gb|EFX38632.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
          Length = 180

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 19/177 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M       Q SA    I+L  PQ+ +N G +AR     N + L ++ P      ++    
Sbjct: 1   MNIEELDYQESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKR 59

Query: 61  SANADCVIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +       D   VR + +L+E +             R+    +++        +     G
Sbjct: 60  A--GLDYWDKLDVRFYDSLEEFME----------AARDGQVHLVSKFANQTYSDVSYQDG 107

Query: 119 QNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           ++   +FGRE  GL  E+    +    I  P+N     SLN+S  V ++V+E +   
Sbjct: 108 KSHYFLFGREDKGLP-EDFMRQHEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|209966487|ref|YP_002299402.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
 gi|209959953|gb|ACJ00590.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
          Length = 265

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 16/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVID--SVRVFSNLKEAI 81
             N+G + R    F L +L + + P    PSE A   +      +       F+     +
Sbjct: 129 PHNLGAIVRTAAFFGLDRLVISDHPEQAQPSESAYRVAEGGFEYVQIYRADRFATAVRRL 188

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A+ + +  T                    L       +   ++ G E  GL  E +    
Sbjct: 189 AESYRVVGTALGGH-------------PALGRLTGGPKPPAVLLGNEEDGLPAETLRACA 235

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            + + P      SLN++    ++ WE   
Sbjct: 236 ELATIPGAGQVQSLNVAATAAILAWEMTR 264


>gi|145301039|ref|YP_001143880.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853811|gb|ABO92132.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 154

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++  N G + R   N    +L L+ P      +K    +       +   V   
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTG-YRLHLIEPLGFEWDDKRVKRA--GLDYHEFAEVKRW 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +     A+A    ++A T +                    +   G    ++FG E  G
Sbjct: 61  PSYEAFLAAVAP-ERVFACTTKGST------------AHSAAQFAPGD--ALLFGPESRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E I        +  P+ P   S+N+S AV + V+E    
Sbjct: 106 LPLEIIESLPFEQRLRIPMLPQSRSMNLSNAVAVFVYESWRQ 147


>gi|256028386|ref|ZP_05442220.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289766311|ref|ZP_06525689.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289717866|gb|EFD81878.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 150

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+    N   T+L L+ P      EK    +      +  ++V+
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTN---TKLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +     +   YATT   +                   +   +N  I+FG E  G
Sbjct: 60  DSFEEFLEANKGIRLFYATTKTKQKYC---------------DVKYEKNDYIMFGPESRG 104

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVVILYEAYRQ 145


>gi|325267126|ref|ZP_08133794.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
           33394]
 gi|324981364|gb|EGC17008.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
           33394]
          Length = 174

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 25/164 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            ++L  P++  N G + R   N   + L LV P            +       +  R  V
Sbjct: 23  TVVLYQPEIPPNTGNIIRLCANTGCS-LHLVKPLGFPLDSSKMKRA--GLDYHEFARLTV 79

Query: 74  FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             N +E   A+A    I+A T   +   +             ++         +FG E  
Sbjct: 80  HENWEECMQALAG-RRIFALT--TKGTARP------------DKAAFQAGDVFVFGPETR 124

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +     N  I FP+ P   S+N+S  V + V+E     
Sbjct: 125 GLPAEILDTLPENQKIRFPMLPDNRSMNLSNTVAVTVFEAWRQQ 168


>gi|167754822|ref|ZP_02426949.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402]
 gi|237735446|ref|ZP_04565927.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
 gi|167704872|gb|EDS19451.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402]
 gi|229381191|gb|EEO31282.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 246

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 13/149 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P    N+G + R M  FN T L ++ P       +   +S  A   I +   F++
Sbjct: 96  VVLVNPGDMGNMGTIIRTMLGFNYTNLAIIRPGVDVFDPRVIRASMGALFNI-NFEYFNS 154

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             E +         T         ++   + A  +++   +     ++FG E  GL ++ 
Sbjct: 155 FDEYL---------TKYPEREVYPLML--KGAKNIHQITAANNKHSLVFGNESSGLPDDY 203

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV 165
           +    + +  P +    SLN+S A+ + +
Sbjct: 204 LKYGQS-VFIPHSDKIDSLNLSMALGITL 231


>gi|266619523|ref|ZP_06112458.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
 gi|288868934|gb|EFD01233.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
          Length = 164

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L++P++  N G + R       T+L L+ P     ++K    +       D   V V+
Sbjct: 3   VVLLEPEMPANTGNIGRTCVATG-TKLHLIEPLGFRLNDKLIKRA--GLDYWDKLDVTVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + ++ +             RN    +       + +   +    +  ++FG+E  G+  
Sbjct: 60  CDYQDFLE------------RNPGAKIYMATTKGLKVYSDVEYEPDCFLMFGKESAGIPE 107

Query: 135 EEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +          +  P+     SLN+S +V ++++E +  
Sbjct: 108 EILLENQEQC---VRIPMWGDIRSLNLSNSVSIVLYEALRQ 145


>gi|19704144|ref|NP_603706.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714356|gb|AAL95005.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 150

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+     LT   L L+ P      EK    +      +  ++++
Sbjct: 3   IVLYQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +     +   YATT   +                   +   +N  I+FG E  G
Sbjct: 60  ESFEEFLEANKGIRLFYATTKTKQRYS---------------DVKYEENDYIMFGPESRG 104

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145


>gi|228476565|ref|ZP_04061247.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           salivarius SK126]
 gi|228251760|gb|EEK10825.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           salivarius SK126]
          Length = 169

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G +AR     N + L ++ P      +K    +       D + +  +
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL + ++          +N++    ++         +E    G +   +FGRE  GL  
Sbjct: 63  DNLADFMS----------KNQDGRLHLVTKFADKTYSDENYADGGDHYFMFGREDTGLP- 111

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    I  P+N     SLN+S  V ++V+E +   
Sbjct: 112 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 152


>gi|149908629|ref|ZP_01897291.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
 gi|149808463|gb|EDM68400.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
          Length = 154

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 31/172 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N    +L L+ P      +K    +       +   V   
Sbjct: 4   IALFEPEIPPNTGNIIRLCANSGF-KLHLIEPLGFEWDDKRVKRA--GLDYHEFADVKRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +    + + D      TT       K     +  A  +           ++FG E  G
Sbjct: 61  ANYQAFLDCVGDARIFACTT----KGTKYHHEAQYQAGDV-----------LLFGPETRG 105

Query: 132 LTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           L  E +   + +     +  P+ P   S+N+S AV + ++E       +  K
Sbjct: 106 LPPEVL---DTLPQEQKVRIPMLPESRSMNLSNAVSVFIYESWRQLGFAGSK 154


>gi|284799524|ref|ZP_05984222.2| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
           NJ9703]
 gi|284798134|gb|EFC53481.1| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
           NJ9703]
          Length = 157

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            I+L  P++  N G + R   N     L LV P            +       +  +  V
Sbjct: 6   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLAV 62

Query: 74  FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             N ++ +   +   I+A T +          P E +          +   ++FG E  G
Sbjct: 63  HENFEDCLKALEGRRIFALTTKGSTR------PDEVSFR--------EGDVLLFGPETRG 108

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 109 LPAEVLDSLPAGQKIRLPMMPDSRSMNLSNTVAVILFEAWRQ 150


>gi|119475548|ref|ZP_01615901.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119451751|gb|EAW32984.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 154

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L ++ P      +K    +      +  V  + +
Sbjct: 4   IALYEPRIAPNTGNIIRLCANNGCH-LHIIEPMGFDFEDKKLRRAGLDYSDLAHVTRYPD 62

Query: 77  ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                E +     +  TT  +R+                +++   +   ++FG E  GL 
Sbjct: 63  YAVFAEQMNGRRILACTTKGSRHY---------------DQMDYQKGDVLLFGSETAGLP 107

Query: 134 NE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  +   ++ ++  P++P   SLN+S +V ++ +E    
Sbjct: 108 AELRDSFPADNLLKIPMHPTSRSLNLSNSVAIITYEAWRQ 147


>gi|82702256|ref|YP_411822.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
 gi|82410321|gb|ABB74430.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
          Length = 153

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 35/169 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP-----------RDGWPSEKARSSSANAD 65
           +IL  P++  N G + R   N  + +L LV P           R G    +  S + +AD
Sbjct: 4   VILYQPEIPPNTGNIIRLCANTGI-RLHLVKPLGFTLEDKLLLRAGLDYHEFASITVHAD 62

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V         L +             R+R  F    A         + +        +F
Sbjct: 63  WV----ECMDELGD-------------RDRRFF----AISTKGKQRYDLVTYSPGDAFLF 101

Query: 126 GRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL  + +        +  P+     SLN+S AV ++V+E    +
Sbjct: 102 GPESRGLPTDLLENFPEQHRLRVPMAAGSRSLNLSNAVAVIVYEAWRQT 150


>gi|153810968|ref|ZP_01963636.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
 gi|149832856|gb|EDM87939.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
          Length = 166

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L++P++  N G + R     + T+L L+ P     SEKA   +         + V   
Sbjct: 6   IVLLEPEIPANTGNIGRTCVATD-TKLHLIEPLGFSLSEKALKRA--GMDYWKDLDVTTY 62

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E   +    YATT                A+     +   ++  I+FG+E  G
Sbjct: 63  LDYEDFLEKNPNAKIYYATT---------------KALKTYTDVQYEEDCYIMFGKESAG 107

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +    +  +  P+     SLN+S +V ++++E +  
Sbjct: 108 IPEEILMEHKDNCVRIPMINEIRSLNLSNSVAIVLYEALRQ 148


>gi|261366563|ref|ZP_05979446.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
 gi|282571380|gb|EFB76915.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
          Length = 169

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 25/172 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV+PQ+ +N G +AR        +L +V P      +K    +         + +  +
Sbjct: 6   IVLVEPQIPQNSGNIARTCAVTG-ARLHMVGPMGFAIDDKKLKRA--GLDYWHQLDITYY 62

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L +  +     F Y T+   R +   V  P                  ++FGRE  GL
Sbjct: 63  KDLADFFSKNKGPFFYFTSKGPRRHV-DVQYPD--------------GAYLVFGREDAGL 107

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             E +    ++  +  P+      LN+S AV + V+E +     +  +   +
Sbjct: 108 PEELLVRHEAD-CVRMPMRRGERCLNLSNAVAVGVYEVLRQWDFAGLETHGQ 158


>gi|163814594|ref|ZP_02205983.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
 gi|158450229|gb|EDP27224.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
          Length = 166

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 24/171 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R        +L L+ P     +EK    +       D   V  +
Sbjct: 4   IVLHEPEIPANTGNIGRTCVAAG-ARLHLIEPLGFQINEKQLKRA--GLDYWDKLDVTTY 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N ++ +A         ATT + R  +  V    +                I+FG+E  G
Sbjct: 61  VNFEDFLAKNPGAKIYMATT-KARKKYTDVRFEDD--------------AYIMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           +  E +    +  I  P+ P   SLN+  +V ++++E +  +     +   
Sbjct: 106 IPEEILVDYKDTAIRIPMFPDIRSLNLGNSVAIVLYEALRQNDFPGLEEAG 156


>gi|229826636|ref|ZP_04452705.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC
           49176]
 gi|229789506|gb|EEP25620.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC
           49176]
          Length = 164

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 18/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           IIL +P++  N G + R       T L L+ P     S+KA   +         +   V+
Sbjct: 3   IILHEPEIPANTGNIGRTCVATG-TALHLIRPLGFDISDKAVRRA--GMDYWKDLELYVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  + +            ++N    +      A      +   +N  I+FG+E  G+  
Sbjct: 60  EDFNDFV------------SKNPNARIYMATTKAKKAYTEVIYEENDFIMFGKESAGIPE 107

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E +    +  +  P+     SLN+S +V +M++E +   
Sbjct: 108 EILIKYEDTSVRIPMIGEIRSLNLSNSVAIMLYEALRQQ 146


>gi|238022623|ref|ZP_04603049.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
 gi|237866063|gb|EEP67197.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
          Length = 178

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 14/173 (8%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P     A+   I+L   Q   N+G V R+     +  + L        S K   +   
Sbjct: 19  ALPCPAPPAREDCIVLDAVQDAGNVGTVLRSAAAAGIRHVVLGAGCADAYSPKVLRAGMG 78

Query: 64  ADCVIDSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A   +       NL++ +A   H   AT     NNF        +   L+ R  S     
Sbjct: 79  AHFALTLHERV-NLRDWLAGYPHRTLATALTEHNNF--------SLYELDLRPPS----A 125

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            IFG E  G++ + +A ++A +  P+     SLNI+QA  + ++E M   + S
Sbjct: 126 WIFGNEGSGVSPDILAAADATVKIPMQGAVESLNIAQAATICLFEQMRQRLAS 178


>gi|254524481|ref|ZP_05136536.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14]
 gi|219722072|gb|EED40597.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14]
          Length = 159

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G V R   N    QL LV P      +K    +         ++V  +
Sbjct: 9   VILFQPEIPPNTGNVIRLCANTG-AQLHLVEPLGFALEDKQLKRAGLDYHEYSRLQVHPD 67

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+A            R   K + A    A V  + +        +FG E  GL  + 
Sbjct: 68  LDTALA------------RIAPKRLFALSTRASVRYDSVAFEDGDAFLFGPESRGLPQDV 115

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +        +  P+ P   SLN+S  V ++++E       +   
Sbjct: 116 LDALPDGRRLRLPMRPDNRSLNLSNTVAVVMYEAWRQHGFAGGA 159


>gi|39996299|ref|NP_952250.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983179|gb|AAR34573.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter
           sulfurreducens PCA]
          Length = 164

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 24/168 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV+P++  N G +AR       T L LV  + G+ ++      A  D   +  +R + 
Sbjct: 9   IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAGLDYWSEVDIRYWE 66

Query: 76  NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +L +   A  D  F Y +    R               ++     G    I+FG+E  GL
Sbjct: 67  SLDQLRQAWPDARFFYTSKKAAR-------------CYVDAGFREGD--FIVFGKETVGL 111

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E++  +N    +  P+     SLN+S A  ++++E +  +   +++
Sbjct: 112 P-EDLLRANEEHCVRIPIFGKVRSLNLSTAAGIVLYEALRQTGRLADR 158


>gi|255638690|gb|ACU19650.1| unknown [Glycine max]
          Length = 260

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +S+K   ++LV PQ+  N G +AR      +  L LV P      +     +        
Sbjct: 73  SSSKILQVVLVSPQIPGNTGCIARTCAASAVG-LHLVGPLGFQVDDTKLKRA--GLDYWP 129

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            V V   + ++  D H  +    R +   K +LA  +    ++      +   +IFG E 
Sbjct: 130 YVVV--KIHDSWEDFHNYF----RQQEGEKRLLAFTKRGTKIHSEFSYRKGDYLIFGSET 183

Query: 130 WGLTNEEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            GL  E +            I  P+   +   LN+S +V + ++E        S +   E
Sbjct: 184 SGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQVPSE 243

Query: 183 QNTPATKG 190
                T+ 
Sbjct: 244 SCIDTTEE 251


>gi|118474338|ref|YP_891998.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413564|gb|ABK81984.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus
           82-40]
          Length = 162

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 34/171 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G + R   N    +L L+ P      +K    +       D +   ++
Sbjct: 4   IVLVRPEIHTNTGSIGRMCVNSGC-RLHLIKPLGFMLDDKHLKRA--GLDYWDKLDLVIW 60

Query: 75  SNLKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +L + +       D  F +ATT  NR             +  N +   G    + FG E
Sbjct: 61  ESLDDFLTQNIKFKD-RFFFATTKTNR-------------LYFNTKFQKGD--FLFFGAE 104

Query: 129 RWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             GL    + L        I+ P++    SLN++ +V ++ +E +  +I  
Sbjct: 105 GSGLP---LDLMKIKKENCITIPMSGDGRSLNLATSVGIITYEAIRQNINE 152


>gi|189462421|ref|ZP_03011206.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
 gi|189430859|gb|EDU99843.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
          Length = 180

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 15/168 (8%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 16  SVEEFKEAEKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTAL 75

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA-AIVLNERIF--SGQ 119
            A+  +D  +     +EA+ +LH              +VLA ++     + + +     +
Sbjct: 76  GAEYTVDW-KYCKQTQEAVNELH----------AEGYTVLAIEQCEGSTMLDHLVLDPNK 124

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              I+ G E  G+  E + + +  I  P      SLN+S    +++WE
Sbjct: 125 KYAIVMGNEVKGVQQEVVDMCDGCIEIPQYGTKHSLNVSVTTGIVLWE 172


>gi|313682116|ref|YP_004059854.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM
           16994]
 gi|313154976|gb|ADR33654.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM
           16994]
          Length = 156

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV+PQ+  N G + R   N   + L L+ P      EKA   +         +   V+
Sbjct: 4   IVLVNPQIPNNTGAIGRLCVNTG-SSLHLIKPIGFDIDEKAVRRA--GLDYWHKIDLHVW 60

Query: 75  SNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +++E + D H     F +ATT  +   F+                  G    + FG E 
Sbjct: 61  ESIEEFM-DAHPIKERFFFATTKTDIPYFEH-------------EFQEGDY--LFFGSET 104

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+ +E + A     ++ P+     SLN++ +  ++++E ++ 
Sbjct: 105 AGIPSEILEAYPKQTMTIPMTKEGRSLNLAISSGIILYEAIKQ 147


>gi|238898865|ref|YP_002924547.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466625|gb|ACQ68399.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 170

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 16/160 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P     S+K    +        +V+   +
Sbjct: 8   IVLFEPEIPANTGNIIRLCANSGC-QLHLIKPLGFDLSDKRLRRAGLDYHEFTAVKHHDD 66

Query: 77  LKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +  + +    +   A+          + A        +  +   +N  ++FG E  GL 
Sbjct: 67  YQAFLNNEGFYNTCVAS----------LFALTTKGYSAHSDVNYQKNDYLLFGPETRGLP 116

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 117 SRLLDSLPAEKKIKIPMQPNSRSMNLSNAVSIVVYEAWRQ 156


>gi|119946907|ref|YP_944587.1| RNA methyltransferase [Psychromonas ingrahamii 37]
 gi|119865511|gb|ABM04988.1| RNA methyltransferase, TrmH family, group 2 [Psychromonas
           ingrahamii 37]
          Length = 154

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73
           I L +P++ +N G + R   N     L L+ P      EK    +    +    +   + 
Sbjct: 4   IALFEPEIPQNTGAIIRLCANTGCV-LHLIEPLGFDLDEKKVRRAGLDYHELTHVYRHKN 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +++  +A++       TT                    + +     +  ++FG E  GL 
Sbjct: 63  YNDFLQAVSGKRIFACTTKTT---------------TFHSQANFQADDVLLFGPETRGLP 107

Query: 134 NEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E +   +A+     +  P+     S+N+S AV + V+E    
Sbjct: 108 GEIL---DALPLEQKLRIPMRAESRSMNLSNAVSVFVYEAWRQ 147


>gi|306827948|ref|ZP_07461215.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304429867|gb|EFM32909.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 194

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 32  IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 88

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ I   H               +++              G +   +FGRE  GL  
Sbjct: 89  DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 137

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           + +   +   +  P+N     SLN+S  V ++V+E +   
Sbjct: 138 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVVYEALRQQ 177


>gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
           43768]
 gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
           43768]
          Length = 261

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  ++L   Q   N+G V R+     +  + L        S K   +   A  ++D   
Sbjct: 111 KGDCVVLDSVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLD--- 167

Query: 73  VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++   +L+  +A     ++AT  R                 L +          +FG E 
Sbjct: 168 IYPQADLEIWLARYEDRVFATALREEKQT------VLYGEDLCK------PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATVCLFEQMRQRAA 260


>gi|153828346|ref|ZP_01981013.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39]
 gi|148876176|gb|EDL74311.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39]
          Length = 158

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               I  L        R R +F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFIEYLQ-------RERGSFRVFACTTKTTQHHVDAQFQPGD--VLLFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            IA   +   I  P+ P   SLN+S AV ++ +E          +
Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158


>gi|257452148|ref|ZP_05617447.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|257466059|ref|ZP_05630370.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917214|ref|ZP_07913454.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058693|ref|ZP_07923178.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313684369|gb|EFS21204.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313691089|gb|EFS27924.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 152

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 34/166 (20%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-- 72
           I+L  P++  N G + R+    N   T L L+ P      EK    S        SV+  
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTN---THLHLIKPLGFSLDEKQIKRS--GLDYWHSVQLT 57

Query: 73  VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V+ + +E +A   ++   YATT   +                   +    N  I+FG E 
Sbjct: 58  VWESFEEFLASDPNMRLFYATTKTKQRYS---------------DVSYKANDYIMFGPES 102

Query: 130 WGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  E +          I+ P+ P+  SLN+S +  ++++E +  
Sbjct: 103 RGIPEEILKKNPERC---ITIPMIPMGRSLNLSNSAAIILYEALRQ 145


>gi|124023171|ref|YP_001017478.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963457|gb|ABM78213.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9303]
          Length = 166

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 28/175 (16%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
            +      + L +P++  N G +AR    F +  L L+ P  G+  +      A  D   
Sbjct: 4   PSELSPLRVALYEPRIPPNTGNIARTCAAFRIP-LALIEPL-GFSLDDRYLRRAGLDYWP 61

Query: 69  DSVRVF----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                        +E +   H +   +   R     + + +     +           ++
Sbjct: 62  HVALSVHSDLDTFRECLPLNHRLIGCS---RFGGIPLRSMRFQTGDV-----------LL 107

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFP--------SLNISQAVLLMVWECMEN 171
           FGRE  GL  +     + I + P+             SLN+S A  ++ +E  + 
Sbjct: 108 FGREDTGLPTKIRQQCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGQQ 162


>gi|109897315|ref|YP_660570.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109699596|gb|ABG39516.1| RNA methyltransferase, TrmH family, group 2 [Pseudoalteromonas
           atlantica T6c]
          Length = 154

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N     L L+ P      +K    +        +V   ++
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGFA-LHLIEPLGFEWDDKRVRRAGLDYHEFANVVRHAS 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+   E+         TT                      +        ++FG E  GL 
Sbjct: 63  LQAYMESRQPKRIFACTT---------------KGTTFFAKAEYQLGDALLFGPETRGLP 107

Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++ I        +  P+ P   S+N+S AV + V+E    
Sbjct: 108 DDVIQSLPPEQRVRIPMLPDSRSMNLSNAVSVFVYEAWRQ 147


>gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 244

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
           VI+L D Q   N+G + R+  +F    + L +      +EK   S+  A   +  +R  V
Sbjct: 102 VIVLDDVQDPGNVGTIIRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIRGEV 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L+E       I AT+ RN                    I + +   ++FG E  G++
Sbjct: 162 VDMLQELKRKGIRILATSLRNATPLH--------------EIAASERFALVFGNEGSGVS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + + L++  +   ++  F SLN++ A  + ++     
Sbjct: 208 EDVLYLADTHVYIEMD-TFESLNVAVAAGICMYTLKRR 244


>gi|261856917|ref|YP_003264200.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
           neapolitanus c2]
 gi|261837386|gb|ACX97153.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
           neapolitanus c2]
          Length = 159

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 25/172 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R   N  + +L LV P       KA   +       +   V   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGV-RLHLVEPLGFSMETKALRRA--GLDYHEFAEVTVH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             ++ L+  +        TT  + + +               R  +G    ++FG E  G
Sbjct: 61  SDWAALRSVLDGRRLFAMTTKGSTSFY-------------AARFEAGD--VLVFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           L    +A   +++ +  P+ P   SLN+S  V + V+E       +      
Sbjct: 106 LPPHILAEFDADSRLRLPMKPDSRSLNLSNTVAIAVYEVWRQLDFAGATETD 157


>gi|168022298|ref|XP_001763677.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685170|gb|EDQ71567.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 223

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV PQ+  N G +AR      +  L LV P  G+  E ++   A  D      VRV  
Sbjct: 44  VVLVSPQIPGNTGSIARTCAATCVG-LHLVEPM-GFKVEDSKLRRAGLDYWPFVVVRVHK 101

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +  +        + T  + +   K +LA  +    ++  +       ++FG E  GL   
Sbjct: 102 SWDD--------FFTYFQEQEGEKRLLAFTKKGRTIHTDVKYKAGDWLVFGSEVDGLPAA 153

Query: 136 EIALSN------AIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
            +            + FP+N  +  SLN+S A  + V+E +  
Sbjct: 154 ILEQCRSGEFAGGSVRFPMNDSYVRSLNLSVAAGIGVYEALRQ 196


>gi|77359337|ref|YP_338912.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874248|emb|CAI85469.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 154

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 19/166 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N   + L L+ P      +K    +         V+  ++
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFAWDDKRIKRAGLDYHEFSHVQRHAS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +       IYA T +                  + +        ++FG E  GL +
Sbjct: 63  FEAYLEACKPKKIYACTTK--------------GSQFHHQAQYEAGDCLVFGPETRGLPD 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E I        +  P+     S+N+S AV + V+E          K
Sbjct: 109 ELIQSLPNEQRVRIPMQANSRSMNLSNAVSVFVYESWRQLGFPGAK 154


>gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 182

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 10/162 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      VI+L D +   NIG V R    F + ++ L       P+++   ++  A   +
Sbjct: 19  EAEKTPIVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGATETV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127
                  N+ E I +L        +        +   E AI LN+ ++ + +   +IFG 
Sbjct: 79  VW-EHHENVLEVIENL--------KKDEISVFAIEQVENAIFLNDFKVEATKKYALIFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E +G+  E I L +  I  P      SLNIS +  ++VW+  
Sbjct: 130 EVFGVNQEAIRLCDGTIEIPQLGTKHSLNISVSTGIVVWDLF 171


>gi|88813043|ref|ZP_01128285.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis
           Nb-231]
 gi|88789676|gb|EAR20801.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis
           Nb-231]
          Length = 169

 Score = 77.0 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L++P++  N G V R   N  + +L L++P   +  ++    +       +  RV  +
Sbjct: 16  VVLLEPEIPANTGNVIRLCANTGM-RLHLIHPLGFYMDDRRLRRA--GLDYREYARVEEH 72

Query: 77  LKEAIADLHFI-----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              A A    +     +A +A  R  F +V                     ++FG E  G
Sbjct: 73  AGYA-AFCRTVQPMRIFAFSASARRIFHAVRF--------------QPGDALLFGSESRG 117

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           L    +   +  A++  P+ P   SLN+S AV + V+E       +  + +
Sbjct: 118 LPPNLLEAFDPKAVLRLPMVPGNRSLNLSNAVAVAVFEAWRQLGFAGTQEL 168


>gi|88858423|ref|ZP_01133065.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata
           D2]
 gi|88820040|gb|EAR29853.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata
           D2]
          Length = 154

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N   + L L+ P      +K    +         V+   +
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYS-LHLIEPLGFEWDDKRVRRAGLDYHEFSHVKRHPS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  +          A  +         K +      +  +G    ++FG E  GL  E 
Sbjct: 63  LESYL----------ATEKPKKVYACTTKGSGPYHQAQFAAGD--CLLFGPETRGLPMEI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        +  P+ P   S+N+S AV + ++E    
Sbjct: 111 IESLPNEQRLRIPMQPNSRSMNLSNAVAVFIYESWRQ 147


>gi|282898547|ref|ZP_06306535.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196415|gb|EFA71324.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 263

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 19/173 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
              G  + L   Q   N+G + R     + + L L N        K   +SA     +  
Sbjct: 106 PMTGLALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKK 165

Query: 71  VRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +V  NLK+ + D       + AT       +               ++       I+ G
Sbjct: 166 -QVSHNLKDTVQDCQRGGMQVVATLPTAELTYW--------------QVDWSLPSLILLG 210

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            E  GL++E   ++N  +  P++P   SLN++ +  L+++E           N
Sbjct: 211 NEGAGLSDELATMANIQVKIPLSPQVESLNVAISASLILYEAQRQKTCGKNTN 263


>gi|269103943|ref|ZP_06156640.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163841|gb|EEZ42337.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 154

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N     L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKLRRA--GLDYHDLAHVYRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F+  KEA+ D      TT     +              N +   G    +IFG E  G
Sbjct: 61  KDFAAFKEAMGDRRLFACTTKTTNYHT-------------NAKFEQGD--VLIFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E I        +  P+ P   SLN+S AV ++ +E    
Sbjct: 106 LPAEFIESLPLEQRLRIPMQPDSRSLNLSNAVAIIAFEAWRQ 147


>gi|167758642|ref|ZP_02430769.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704]
 gi|167663838|gb|EDS07968.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704]
          Length = 163

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 31/187 (16%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P++  N G + R     N   T+L L+ P     +EK    +       D + V 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVAAN---TRLHLIEPLGFRLNEKNLKRA--GMDYWDKLDVT 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + +     D           RN    +      A      +    +  I+FG+E  G+  
Sbjct: 59  TYID--YDDF--------IRRNPNAKIYMATTKATKAYTDVEYEPDCYIMFGKESAGIPE 108

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
           E +    +  I  P+ P   SLN+  +V ++++E +  +  +               +L 
Sbjct: 109 EILVKHKDDCIRIPMVPDIRSLNLGNSVAIVLYEALRQNAFAGM-------------DLE 155

Query: 194 SFLDYLE 200
             L  LE
Sbjct: 156 GHLHRLE 162


>gi|299822392|ref|ZP_07054278.1| RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299815921|gb|EFI83159.1| RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 172

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 29/175 (16%)

Query: 17  IILVDPQLGENIGMVARAMW---NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           I+L  P++  N G ++R       F    L L+ P      +K    +       D+V++
Sbjct: 8   IVLYQPEIPANTGNISRTCAGTDTF----LHLIRPLGFSTDDKMLKRA--GLDYWDNVKL 61

Query: 74  F--SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
               +L+   EA  D    + T        + V +             + ++   IFG+E
Sbjct: 62  VYHDSLEAFLEASKDGELYFIT-----KFGRHVYSDVSY-------QDTNKDYYFIFGKE 109

Query: 129 RWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             GL +E +   +    +  P+     SLN+S    L+++E +      + +   
Sbjct: 110 TTGLPDELLQQ-HEETCLRIPMTDKIRSLNLSNTAALVIYEVLRQQNFGALEQAP 163


>gi|296875981|ref|ZP_06900040.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
 gi|296433056|gb|EFH18844.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
          Length = 180

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 17/176 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M       Q SA    I+L  PQ+ +N G +AR     N + L ++ P      ++    
Sbjct: 1   MNIEELDYQESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKR 59

Query: 61  SANADCVIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +       D   VR + +L+E +             R+    +++        +     G
Sbjct: 60  A--GLDYWDKLDVRFYDSLEEFME----------AARDGQVHLVSKFANQTYSDVSYQDG 107

Query: 119 QNVGIIFGRERWGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           ++   +FGRE  GL  + +       I  P+N     SLN+S  V ++V+E +   
Sbjct: 108 KSHYFLFGREDKGLPEDFMRQYEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|323495118|ref|ZP_08100204.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546]
 gi|323310619|gb|EGA63797.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546]
          Length = 158

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N     L L+ P      EK    +       D  RV   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60

Query: 74  ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                    L++   D      TT   +     V A  +   VL            +FG 
Sbjct: 61  KDYQAFVEYLEKERGDYRIFACTT---KTTGHHVDANFQKGDVL------------LFGP 105

Query: 128 ERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  GL  E I        I  P+ P   SLN+S AV ++ +E          +
Sbjct: 106 ETRGLPAELIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158


>gi|310827287|ref|YP_003959644.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308739021|gb|ADO36681.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 154

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVR 72
           ++L  P++ +N G +AR     N   T+L L+ P      EK    +   D   ++D   
Sbjct: 3   VVLYQPEIPQNTGNIARTCALTN---TKLHLIKPLGFSLDEKHLKRA-GLDYWDLLDLA- 57

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V+ + ++ +            ++N    +      A      I    +  ++FGRE  GL
Sbjct: 58  VYDDFEDFL------------DKNPDPEIYVLTTHAKAFYSDIEYTGDAYLLFGRETAGL 105

Query: 133 TNEEIALS--NAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171
             +EI  +  +     P+  +    SLN+S +V ++++E +  
Sbjct: 106 P-DEIHSAYPDHRFRIPMRNHERARSLNLSNSVNIVLYEALRQ 147


>gi|312882793|ref|ZP_07742527.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369577|gb|EFP97095.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 158

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  -------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                  L E          TT             K +   ++ +   G    ++FG E 
Sbjct: 63  YPAFLQYLNENRQGFRLFACTT-------------KASGHHVDAQFQQGD--VLLFGPET 107

Query: 130 WGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  + I    +   +  P+ P   SLN+S AV ++ +E    
Sbjct: 108 RGLPEDIIDSLPAEQRLRIPMMPDARSLNLSNAVAIIAFEAWRQ 151


>gi|166368124|ref|YP_001660397.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166090497|dbj|BAG05205.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 157

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 28/165 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L++PQ+  N G +AR       T+L LV P     S++    +         V++  
Sbjct: 7   RVVLINPQIPPNTGNIARTCAAT-RTELHLVGPLGFEISDRYLKRA--GLDYWPYVKLMY 63

Query: 76  NLKEAIAD-LHF-------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +L   I D   +           T R  +++  V    ++   L            +FG 
Sbjct: 64  HLT--INDFCDYQQKSGGRAIGFTVRGSSSY--VEYSYQSGDWL------------LFGS 107

Query: 128 ERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
           E  G+  + +   +  +  P+  P   SLN+S +V + ++E    
Sbjct: 108 ETDGIPADLLNKCDDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQ 152


>gi|271502514|ref|YP_003335540.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
 gi|270346069|gb|ACZ78834.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
          Length = 154

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R   N   + L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  +A+A       TT  +R        P      +           ++FG E  G
Sbjct: 61  RNYQDFLQAVAGQRIFACTTKGSR----PYDEPDYQPGDV-----------LLFGSETAG 105

Query: 132 LTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +EI   N       I  P+ P   SLN+S +V ++ +E    
Sbjct: 106 LP-DEIR--NGFAPENRIRIPMEPNCRSLNLSNSVAIISYEAWRQ 147


>gi|325690961|gb|EGD32961.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK115]
          Length = 184

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D  ++  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLNITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +        R     K         +   E+  +  +   +FGRE  GL  
Sbjct: 79  ESLGDFMEQMD------GRLYLISK-----FAEKVYSEEKFAAEGSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S AV ++V+E +     +    V E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|157373044|ref|YP_001481033.1| putative tRNA/rRNA methyltransferase YibK [Serratia proteamaculans
           568]
 gi|157324808|gb|ABV43905.1| RNA methyltransferase, TrmH family, group 2 [Serratia
           proteamaculans 568]
          Length = 157

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +       +   +  +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPMGFPWDDKRLRRA--GLDYHEFASIRRH 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                AD     A+      N + + A        +  +       ++FG E  GL  E 
Sbjct: 61  -----ADYAAFIAS-----ENPQRLFALTTKGTPAHSAVSYQAGDYLLFGPETRGLPAEI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 111 LEALPAQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQ 147


>gi|148265317|ref|YP_001232023.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4]
 gi|146398817|gb|ABQ27450.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4]
          Length = 160

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 30/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+LV+P++  N G +AR       T   L LV        ++A   +         V + 
Sbjct: 9   IVLVEPEIPPNTGNIARLC---GATSTVLHLVGKLGFSTDDRALKRA--GLDYWSEVDIH 63

Query: 75  -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                  LK A     FIY     ++   +S +  +  A              I+FG+E 
Sbjct: 64  YWEDLDALKSAYPGGRFIY----TSKKVPRSYVEMEFTAGDF-----------IVFGKET 108

Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL  +E+  +  +  +  P+     SLN+S A  ++++E +  +
Sbjct: 109 KGLP-DELIEANPDTAVRIPIFGRVRSLNLSTAAGIVLYEALRQT 152


>gi|303287456|ref|XP_003063017.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455653|gb|EEH52956.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 17/99 (17%)

Query: 89  ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV 148
           ATTAR R N   ++  + AA +L      G  V ++FG ER GLTNEE+  ++A ++ P 
Sbjct: 197 ATTARPRENV-PLVTARNAAKLLAAEAKRG-KVAVLFGNERTGLTNEELGTAHAAVAIPT 254

Query: 149 NPLFP---------------SLNISQAVLLMVWECMENS 172
                               SLN+SQAV ++ +E    +
Sbjct: 255 AGQGSLCRKSLKYTGGTGPTSLNLSQAVGVIAYEMFLAA 293


>gi|34762434|ref|ZP_00143434.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887902|gb|EAA24970.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 150

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+     LT   L L+ P      EK    +      +  ++++
Sbjct: 3   IVLYQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +     +   YATT   +                   +   +N  I+FG E  G
Sbjct: 60  ESFEEFLETNKGIRLFYATTKTKQKYC---------------DVKYEENDYIMFGPESRG 104

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +          ++ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEDILNKNPERC---VTIPMIPMGRSLNLSNSAVIILYEAYRQ 145


>gi|291561907|emb|CBL40712.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium
           SS3/4]
          Length = 164

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 71/188 (37%), Gaps = 33/188 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R     N T+L L+ P     SEK    +       D   V V+
Sbjct: 3   IVLYEPEMPANTGNIGRTCVATN-TKLHLIEPLGFKLSEKHLVRA--GLDYWDKLDVTVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+ ++ +             RN    +         +   +    +V I+FG E  G+  
Sbjct: 60  SDYQDFLK------------RNPGAKIYMATTKGEHVYTDVPYDPDVYIMFGPESRGIP- 106

Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           EEI + N    I  P+     SLN+S +V ++++E +  +                   +
Sbjct: 107 EEILVENRENCIRIPMWGDIRSLNLSNSVAIVLYEALRQNGFEKMT-------------M 153

Query: 193 LSFLDYLE 200
              L +L 
Sbjct: 154 EGHLHHLH 161


>gi|78067649|ref|YP_370418.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
 gi|77968394|gb|ABB09774.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
          Length = 156

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N    +L L+ P  G+P + AR   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  DWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150


>gi|154505239|ref|ZP_02041977.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
 gi|153794437|gb|EDN76857.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
          Length = 166

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L +P++  N G + R     N T+L L+ P     +EKA   +   D   D  VR + 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKALKRA-GMDYWADLDVRTYI 61

Query: 76  NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           N ++ +          ATT                A  +   +    +  I+FG+E  G+
Sbjct: 62  NFEDFLEKNPGAKIYMATT---------------KAPKVYTEVQYEPDCYIMFGKESAGI 106

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             E +       +  P+     SLN+  +V ++++E +   
Sbjct: 107 PEEILVNHKEDCVRIPMVGDIRSLNLGNSVAIILYEALRQQ 147


>gi|94989816|ref|YP_597916.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94543324|gb|ABF33372.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
          Length = 194

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 32  IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 88

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ I   H               +++              G +   +FGRE  GL  
Sbjct: 89  DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 137

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           + +   +   +  P+N     SLN+S  V ++++E +   
Sbjct: 138 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 177


>gi|50913684|ref|YP_059656.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|71902967|ref|YP_279770.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94987942|ref|YP_596043.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94991826|ref|YP_599925.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94993702|ref|YP_601800.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|50902758|gb|AAT86473.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|71802062|gb|AAX71415.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94541450|gb|ABF31499.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545334|gb|ABF35381.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94547210|gb|ABF37256.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
          Length = 194

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 32  IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 88

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ I   H               +++              G +   +FGRE  GL  
Sbjct: 89  DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 137

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           + +   +   +  P+N     SLN+S  V ++++E +   
Sbjct: 138 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 177


>gi|19745529|ref|NP_606665.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|19747648|gb|AAL97164.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
          Length = 182

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 20  IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ I   H               +++              G +   +FGRE  GL  
Sbjct: 77  DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           + +   +   +  P+N     SLN+S  V ++++E +   
Sbjct: 126 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 165


>gi|15674520|ref|NP_268694.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71910126|ref|YP_281676.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|139474353|ref|YP_001129069.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|209558867|ref|YP_002285339.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
 gi|313471792|sp|Q48V41|TRML_STRPM RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase M28_Spy0301
 gi|13621623|gb|AAK33415.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
 gi|71852908|gb|AAZ50931.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|134272600|emb|CAM30867.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|209540068|gb|ACI60644.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
          Length = 182

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 20  IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ I   H               +++              G +   +FGRE  GL  
Sbjct: 77  DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           + +   +   +  P+N     SLN+S  V ++++E +   
Sbjct: 126 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 165


>gi|21909807|ref|NP_664075.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28896500|ref|NP_802850.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|21903993|gb|AAM78878.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28811754|dbj|BAC64683.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
          Length = 182

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 20  IVLFQPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLELHFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ I   H               +++              G +   +FGRE  GL  
Sbjct: 77  DHLEQFINQCH-----------GQLHLISKFAVNNYSQATYADGDSHYFLFGREDTGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           + +   +   +  P+N     SLN+S  V ++++E +   
Sbjct: 126 DFMREHAEKALRIPMNDEHVRSLNVSNTVCMVIYEALRQQ 165


>gi|83746863|ref|ZP_00943910.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|207727800|ref|YP_002256194.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|207742203|ref|YP_002258595.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|83726448|gb|EAP73579.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|206591041|emb|CAQ56653.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206593591|emb|CAQ60518.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 156

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F S+   P +                 +FG E  
Sbjct: 62  DWEAFLRDAQPDPARMFALTTRGSTPFASLAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+ E  E    +  I  P+ P   SLN+S  V ++V+E    
Sbjct: 107 GLSEERREWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|332706614|ref|ZP_08426675.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L]
 gi|332354498|gb|EGJ33977.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L]
          Length = 153

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++L++PQ+  N G +AR       TQL LV P     S++    +         V  +  
Sbjct: 4   VVLINPQIPPNTGNIARTCAAT-TTQLHLVGPLGFEISDRYLKRA--GLDYWPYVDLKYH 60

Query: 75  SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +    ++     +  +I  T     N  K    PK+                ++FG E 
Sbjct: 61  DSFDAFVSYHQKQEGRWIGFTKRGTYNYIKFQFQPKDW---------------LLFGCET 105

Query: 130 WGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171
            GL    +    A +  P   P   SLN+S +  L ++E    
Sbjct: 106 TGLPPHVLEACQAKVFIPMTQPGVRSLNLSVSAALGLFEARRQ 148


>gi|126649466|ref|ZP_01721707.1| CspR [Bacillus sp. B14905]
 gi|126593791|gb|EAZ87714.1| CspR [Bacillus sp. B14905]
          Length = 157

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +        SV V 
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRA--GLDYWHSVNVV 59

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +L + I          A +++    ++    +     ++     +++  +FG+E  G
Sbjct: 60  YHDSLDDFI----------AYSKDGDVYLIETYSDEPFTTHDFSDKERDIYFMFGKETTG 109

Query: 132 LTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E      N  +  P +    SLN+S    ++++E +   
Sbjct: 110 LPKEFAYERRNMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151


>gi|325922006|ref|ZP_08183810.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC
           19865]
 gi|325547509|gb|EGD18559.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC
           19865]
          Length = 158

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +    +V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLRRA--GLDYHEYATLQVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L  A+A +    ++A + R+         P         +   G     +FG E  GL
Sbjct: 65  ADLTTALAAIAPKRVFALSTRS---SVRYDTP---------QFADGD--AFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + +        +  P+ P   SLN+S  V +MV+E       S  +
Sbjct: 111 PADVLESIPPQHRLRVPMRPDNRSLNLSNTVAVMVFEAWRQWDFSGGR 158


>gi|227873071|ref|ZP_03991365.1| tRNA methylase SpoU [Oribacterium sinus F0268]
 gi|227841052|gb|EEJ51388.1| tRNA methylase SpoU [Oribacterium sinus F0268]
          Length = 170

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 32/169 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R       + L L+ P     ++K    +      +  +R + +
Sbjct: 3   IVLHEPEIPFNTGAIGRTCVATK-STLHLIKPYGFILNDKNIKKAGMDYWPLLKLREYIS 61

Query: 77  LKEAIADLH---------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            +E +A +            YATT  ++ + +   +P +                I+FG+
Sbjct: 62  YEEFMAGVEEERKIALPKVWYATTKAHKTHTEVSFSPNDY---------------IVFGK 106

Query: 128 ERWGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+  E +          I  P+     SLN+S +V ++++E +   
Sbjct: 107 ESAGIPEEILVDNEEQC---IRIPMLEEARSLNLSNSVAIILYEALRQQ 152


>gi|220907253|ref|YP_002482564.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
 gi|219863864|gb|ACL44203.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
          Length = 152

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           ++LV PQ+  N G +AR       T+L LV P     S++    +         V +   
Sbjct: 3   VVLVHPQIPPNTGNIARTCAAT-QTELHLVEPLGFELSDRYLKRA--GLDYWPFVHLTCH 59

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  + +A          R           +  A              ++FG E  G
Sbjct: 60  PDWPSFTQVVA---------KRGGRLIGFDTTGESNAFQFKFAADDW----LLFGSETDG 106

Query: 132 LTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
           L  E +   +  +  P+  P   SLN+S +V + ++E    
Sbjct: 107 LPAEVLVACDDTVYIPMGQPGVRSLNLSVSVAIGLFEARRQ 147


>gi|114561495|ref|YP_749008.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114332788|gb|ABI70170.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           frigidimarina NCIMB 400]
          Length = 154

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N   +QL L+ P      EK    +      + SV    N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDLEEKKLRRAGLDYSDLTSVTRHKN 62

Query: 77  ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+A    I  TT  +R +                +I   +N  ++FG E  GL 
Sbjct: 63  YTAFLEAMAGKRIIACTTKGSRPHT---------------QIAFQENDVLLFGPETRGLP 107

Query: 134 NEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            + I    L+  +   P+     SLN+S +V ++ +E       +  +
Sbjct: 108 MDIIDATPLAQRL-RIPMTANSRSLNLSNSVAIISYEAWRQLGFAGAE 154


>gi|15642690|ref|NP_232323.1| rRNA methylase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121586619|ref|ZP_01676404.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80]
 gi|121726684|ref|ZP_01679909.1| rRNA methylase, SpoU family [Vibrio cholerae V52]
 gi|147674422|ref|YP_001218183.1| rRNA methylase [Vibrio cholerae O395]
 gi|153820202|ref|ZP_01972869.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457]
 gi|153821286|ref|ZP_01973953.1| rRNA methylase, SpoU family [Vibrio cholerae B33]
 gi|227082811|ref|YP_002811362.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2]
 gi|229507257|ref|ZP_04396762.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX
           330286]
 gi|229509821|ref|ZP_04399302.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33]
 gi|229516943|ref|ZP_04406389.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9]
 gi|229606764|ref|YP_002877412.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|254851231|ref|ZP_05240581.1| rRNA methylase [Vibrio cholerae MO10]
 gi|255744345|ref|ZP_05418297.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101]
 gi|262158545|ref|ZP_06029660.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|262170061|ref|ZP_06037750.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27]
 gi|298500489|ref|ZP_07010293.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK
           757]
 gi|9657291|gb|AAF95836.1| rRNA methylase, SpoU family [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549178|gb|EAX59211.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80]
 gi|121630845|gb|EAX63227.1| rRNA methylase, SpoU family [Vibrio cholerae V52]
 gi|126509257|gb|EAZ71851.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457]
 gi|126521218|gb|EAZ78441.1| rRNA methylase, SpoU family [Vibrio cholerae B33]
 gi|146316305|gb|ABQ20844.1| rRNA methylase, SpoU family [Vibrio cholerae O395]
 gi|227010699|gb|ACP06911.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2]
 gi|227014583|gb|ACP10793.1| rRNA methylase, SpoU family [Vibrio cholerae O395]
 gi|229346006|gb|EEO10978.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9]
 gi|229353295|gb|EEO18234.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33]
 gi|229354762|gb|EEO19683.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX
           330286]
 gi|229369419|gb|ACQ59842.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|254846936|gb|EET25350.1| rRNA methylase [Vibrio cholerae MO10]
 gi|255737870|gb|EET93263.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101]
 gi|262021469|gb|EEY40181.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27]
 gi|262029706|gb|EEY48355.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|297540658|gb|EFH76715.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK
           757]
          Length = 158

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               I  L        R R +F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFIEYLQ-------RERGSFRLFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            IA   +   I  P+ P   SLN+S AV ++ +E          +
Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158


>gi|295107992|emb|CBL21945.1| Predicted rRNA methylase (SpoU class) [Ruminococcus obeum A2-162]
          Length = 166

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 26/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L++P++  N G + R       T+L L+ P     SEKA   +         + V   
Sbjct: 6   IVLLEPEIPANTGNIGRTCVATG-TKLHLIEPLGFSLSEKALKRA--GMDYWKDLDVSTY 62

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E   +    YATT                A+     +    +  I+FG+E  G
Sbjct: 63  LDYEDFVEKNPNAKIYYATT---------------KALKTYTDVQYEDDCYIMFGKESAG 107

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  EEI + +    +  P+     SLN+S +V ++++E +  
Sbjct: 108 IP-EEILMEHKENCVRIPMINDIRSLNLSNSVAIVLYEALRQ 148


>gi|294626395|ref|ZP_06704996.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599280|gb|EFF43416.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 158

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +    +V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYTPLQVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L  A+A +    ++A + R+          +       +          +FG E  GL
Sbjct: 65  ADLPSALAAIAPKRVFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +        +  P+ P   SLN+S  V +MV+E       +  +
Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158


>gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 178

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 10/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++     +++L D +   NIG V R    F + ++ L       P+++   ++  A   +
Sbjct: 19  KSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPPNKEIHKTALGATETV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127
                  N+ E I +L        +  N     +   E+A+ L + ++   Q   ++FG 
Sbjct: 79  AW-EHHENVLEVIENL--------KKENVLTLAIEQVESAVFLQDFQVEKNQKYALVFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E +G++ E +A+ +  I  P      SLNI+ +  ++VW+  +
Sbjct: 130 EVYGVSQEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVWDLFQ 172


>gi|325275734|ref|ZP_08141616.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324099138|gb|EGB97102.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 153

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCH-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L E +  L    ++A T +  + F  V                      +FG E  GL
Sbjct: 61  QSLAECLESLGNPRLFAFTTKGSHPFHEV--------------AYQPGDAFLFGPESRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +    +   +  P+ P   SLN+S  V + V+E    
Sbjct: 107 PAEVLDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 261

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  ++D 
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLD- 167

Query: 71  VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             ++S  +L+  +A     ++AT  R                 L E          +FG 
Sbjct: 168 --IYSQADLEIWLASYKGRVFATALREEKQV------VLYGEDLCE------PTAWVFGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275]
 gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
           Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
           WUE 2594]
 gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568]
          Length = 261

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  ++D 
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLD- 167

Query: 71  VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             ++S  +L+  +A     ++AT  R                 L E          +FG 
Sbjct: 168 --IYSQADLEIWLASYKGRVFATALREEKQ------AVLYGEDLCE------PTAWVFGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|227495210|ref|ZP_03925526.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM
           15436]
 gi|226831662|gb|EEH64045.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM
           15436]
          Length = 153

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           II  +P++  N G   R       + L LV P  G+  E ++   A  D   +  V+   
Sbjct: 4   IIYFEPEIAGNSGAAIRLSACTG-SMLHLVEP-FGFDMEDSKLRRAGLDYHDLAHVQTHP 61

Query: 76  NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +L++A A +   IYA T                A      I       ++FG+E  GL  
Sbjct: 62  DLEDAFAGIEGNIYAFTG--------------HATTFYGDISYQDGDALLFGKESTGLPQ 107

Query: 135 EEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +           P+ P   SLN++ +  ++++E    
Sbjct: 108 WVLDHPQVKLAARIPMLPERRSLNLTNSASIVLYEAWRQ 146


>gi|332798848|ref|YP_004460347.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332696583|gb|AEE91040.1| RNA methyltransferase, TrmH family, group 2 [Tepidanaerobacter sp.
           Re1]
          Length = 167

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 32/179 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L++P++ +N G +AR     + + L L+ P      +K    +      +  VR + +
Sbjct: 11  VVLLEPEIPQNTGNIARTCAATD-SVLHLIGPLGFSLDDKYLKRAGLDYWSLLDVRYYGS 69

Query: 77  LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             E          +   T                 A      +    +  ++FG+E  GL
Sbjct: 70  YLEFEEKNPGGCKYFLTT----------------KAKQCYADVSYEPDCYLVFGKETAGL 113

Query: 133 T------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
                  N E       I  P+     SLN+S +V ++V+E +     +  K       
Sbjct: 114 PVPLLKANRE-----RCIRIPMTDEARSLNLSNSVAIVVYEALRQMGFNGLKTAGPSKA 167


>gi|313901727|ref|ZP_07835156.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468015|gb|EFR63500.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
          Length = 153

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 24/166 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73
           ++LV P++  N G VAR        +L LV P     S++    +     A         
Sbjct: 4   VVLVAPEIAPNTGNVARTCAVTG-ARLHLVRPLGFRLSDRLLKRAGLDYWAHVAWQVHDT 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +L  A+    F Y             L P+ +          G    ++FG E  GL 
Sbjct: 63  WDDLLAALPGARFCY-------------LDPRGSLWYSQMDFAPGD--VLVFGSESRGLP 107

Query: 134 N---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               EE      ++  P+ P   SLN++  V L+++E         
Sbjct: 108 PGLMEE--RPGPVLRVPMRPGLRSLNLASTVALVLYEAYRQQGFPG 151


>gi|220905403|ref|YP_002480715.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869702|gb|ACL50037.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 160

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 23/159 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G VAR      +T L L+ P      ++    +        +VR+   
Sbjct: 3   IVLYEPEIPPNTGNVARLCAATGVT-LNLIEPLGFKLEDRYLKRA--GLDYWPNVRLQVW 59

Query: 74  ---FSNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  +EA+AD     +  T+A++      V                  +  ++FG E
Sbjct: 60  PCWSDFTREALADGRAGRLVFTSAKSAGGSVPVH-----------HFAFDPDDFLVFGPE 108

Query: 129 RWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVW 166
             GL  E + LS   +  P+      S+N+S A  ++++
Sbjct: 109 TRGLPQEILELSPHRVRIPMLEGRVRSINLSTAAGIVLY 147


>gi|159027148|emb|CAO86779.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 157

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 24/163 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
            ++L++PQ+  N G +AR       T+L LV P     S++    +         V++  
Sbjct: 7   RVVLINPQIPPNTGNIARTCAAT-RTELHLVGPLGFEISDRYLKRA--GLDYWPHVKLMY 63

Query: 74  FSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              + +  A            + R  +++  V    ++   L            +FG E 
Sbjct: 64  HLTIDDFCAYQQKSGGRAIGFSVRGSSSY--VEYSYQSGDWL------------LFGSET 109

Query: 130 WGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
            G+  + +   +  +  P+  P   SLN+S +V + ++E    
Sbjct: 110 DGIPADLLNKCDDTVYIPMAEPGVRSLNLSVSVAIGLFEARRQ 152


>gi|262401978|ref|ZP_06078543.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586]
 gi|262351950|gb|EEZ01081.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586]
          Length = 158

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 13/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               I  L        R R  F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFIEYLQ-------RERETFRLFACTTKTTQHHVDAKFQQGD--VLMFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            IA   +   I  P+ P   SLN+S AV ++ +E    
Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
           13091]
          Length = 261

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  ++D 
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLD- 167

Query: 71  VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             ++S  +L+  +A     ++AT  R                 L E          +FG 
Sbjct: 168 --IYSQADLEIWLASYKGRVFATALREEKQ------AVLYGEDLCE------PTAWVFGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|315281638|ref|ZP_07870220.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL
           S4-120]
 gi|313614716|gb|EFR88278.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL
           S4-120]
          Length = 169

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E     A   F Y T        + V +         +     +N   +FG+E  
Sbjct: 61  YDSLDEFFEKNAGGEFFYIT-----KFGRHVYS-------DIDYSDPNKNYFFVFGKETT 108

Query: 131 GLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  +E+  +N    +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLP-DELLQNNEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151


>gi|295675360|ref|YP_003603884.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1002]
 gi|295435203|gb|ADG14373.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1002]
          Length = 156

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P      +     +       +     V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPLGFPLDDTKMRRA--GLDYHEYAEMNVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++    IA    D   ++A T R    F      P +                 +FG E 
Sbjct: 61  TDWDAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDW---------------FVFGAET 105

Query: 130 WGLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL +  +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 106 RGLPDTVLERFTNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
           Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
           8013]
          Length = 261

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  ++D 
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLD- 167

Query: 71  VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             ++S  +L+  +A     ++AT  R                 L E          +FG 
Sbjct: 168 --IYSQADLEIWLASYKGRVFATALREEKQV------VLYGEDLCE------PTAWVFGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|292486593|ref|YP_003529461.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292897830|ref|YP_003537199.1| RNA-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291197678|emb|CBJ44773.1| putative RNA-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291552008|emb|CBA19045.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312170652|emb|CBX78915.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 156

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        ++R  ++
Sbjct: 3   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +          A TA         L  K           +G    ++FG E  GL    
Sbjct: 62  YE----------AFTASEAPQRLFALTTKGTPAHSAVSYQAGDY--LLFGPETRGLPARV 109

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 110 LNALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 146


>gi|237747425|ref|ZP_04577905.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
 gi|229378776|gb|EEO28867.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
          Length = 156

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++LV+P++  N G + R   N    QL L+ P  G+P + A+   A  D      ++V+S
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTG-AQLHLIEPL-GFPLDDAKMRRAGLDYHEFAKIKVYS 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +  + +     D   ++A T                      +         +FG E  G
Sbjct: 62  SWSDFLQKMSPDPSRMFALTT--------------HGSPCFSKTSFHAGDLFVFGSETKG 107

Query: 132 LTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+  EI         I  P+ P   SLN+S +V ++V+E    
Sbjct: 108 LS-LEIHRFFPEGHQIRLPMRPHNRSLNLSNSVAIVVYEAWRQ 149


>gi|322375851|ref|ZP_08050362.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300]
 gi|321279119|gb|EFX56161.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300]
          Length = 180

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 28/174 (16%)

Query: 10  NSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           N  + PV    I+L +PQ+ +N G +AR     N + L ++ P      ++    +    
Sbjct: 7   NDKRKPVMTNHIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GL 63

Query: 66  CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNV 121
              D + +  + +L++ ++                  V    + A  +     + SG++ 
Sbjct: 64  DYWDKLEIYFYDSLEDFMS-------------QMKGQVYLISKFAEKVYSEANLASGEDQ 110

Query: 122 GIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +FGRE  GL  E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 YFLFGREDKGLP-EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|255065468|ref|ZP_05317323.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC
           29256]
 gi|255050293|gb|EET45757.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC
           29256]
          Length = 154

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 29/165 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            I+L  P++  N G + R   N     L LV P  G+P + A+   A      +  +  V
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAG-LDYHEFAKLTV 59

Query: 74  FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             N ++ +   +   I+A T + +     V                 +    +FG E  G
Sbjct: 60  HENFEDCLKALEGRRIFALTTKGKTRPNEVSF--------------VEGDVFLFGPETRG 105

Query: 132 LTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +   + +     +  P+ P   S+N+S  V ++++E    
Sbjct: 106 LPAEIL---DTLPEGQKLRLPMKPGSRSMNLSNTVAVILFEAWRQ 147


>gi|312862562|ref|ZP_07722804.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           vestibularis F0396]
 gi|311101967|gb|EFQ60168.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           vestibularis F0396]
          Length = 169

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G +AR     N + L ++ P      +K    +       D + +  +
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL + ++          +N      ++          E    G++   +FGRE  GL  
Sbjct: 63  DNLADFMS----------KNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLP- 111

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    I  P+N     SLN+S  V ++V+E +   
Sbjct: 112 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 152


>gi|325264611|ref|ZP_08131341.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
 gi|324030273|gb|EGB91558.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
          Length = 165

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 28/163 (17%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+L +P++  N G + R     N   T+L L+ P     +EKA   +         + V 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVASN---TRLHLIGPLGFKLNEKALKRA--GMDYWSDLDVT 58

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F++  E         ATT   +   +    P               +  I+FG+E 
Sbjct: 59  TYIDFNDFMEKNPGAKIYMATTKAPKVYTEVHYEP---------------DCFIMFGKES 103

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  E +       +  P+     SLN+  +V ++++E +  
Sbjct: 104 AGIPEEILVEHKENCVRIPMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|238798831|ref|ZP_04642300.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
 gi|238717339|gb|EEQ09186.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
          Length = 167

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 15/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        S++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHD 62

Query: 77  LK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +     E +       AT AR       + A        +  +    N  ++FG E  G
Sbjct: 63  YQAFLDSEKLDGAQSAGATPAR-------LFALTTKGTPAHSAVSYQANDYLLFGPETRG 115

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 116 LPATVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 157


>gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16]
 gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16]
          Length = 156

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 29/165 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++  N G V R   N    QL LV P  G+P E AR   A      +    RV 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAG-LDYHEYATMRVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +    +A    D   ++A T R    F  V   P +                 +FG E 
Sbjct: 61  ESWDALMASEQPDPARMFALTTRGSTPFGEVAFRPGDW---------------FVFGSET 105

Query: 130 WGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL+ E       +  I   P+ P   SLN+S  V ++V+E    
Sbjct: 106 RGLSPERRDWFPPAQRI-RLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|237741776|ref|ZP_04572257.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|256845104|ref|ZP_05550562.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294785608|ref|ZP_06750896.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           3_1_27]
 gi|229429424|gb|EEO39636.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|256718663|gb|EEU32218.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294487322|gb|EFG34684.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           3_1_27]
          Length = 150

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+     LT   L L+ P      EK    +      +  ++++
Sbjct: 3   IVLYQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +     +   YATT   +                   +   +N  I+FG E  G
Sbjct: 60  ESFEEFLETNKGIRLFYATTKTKQKYC---------------DVKYEENDYIMFGPESRG 104

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145


>gi|240128164|ref|ZP_04740825.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 261

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG   +L   Q   N+G V R+     +  + L        S K   +   A  ++D   
Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167

Query: 73  VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++S  +L+  +A     ++AT  R                 L E          +FG E 
Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260


>gi|59801230|ref|YP_207942.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|240115611|ref|ZP_04729673.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260440578|ref|ZP_05794394.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
          Length = 261

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG   +L   Q   N+G V R+     +  + L        S K   +   A  ++D   
Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167

Query: 73  VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++S  +L+  +A     ++AT  R                 L E          +FG E 
Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260


>gi|170734196|ref|YP_001766143.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|254247124|ref|ZP_04940445.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
 gi|124871900|gb|EAY63616.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
 gi|169817438|gb|ACA92021.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           cenocepacia MC0-3]
          Length = 156

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N     L L+ P  G+P + AR   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  DWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150


>gi|118580121|ref|YP_901371.1| tRNA/rRNA methyltransferase SpoU [Pelobacter propionicus DSM 2379]
 gi|118502831|gb|ABK99313.1| tRNA/rRNA methyltransferase (SpoU) [Pelobacter propionicus DSM
           2379]
          Length = 157

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV+P++  N G +AR       T L LV P      ++    +        SV  +V+
Sbjct: 9   IVLVEPEIPPNTGNIARLCAATG-TVLHLVEPLGFSIDDRQLKRA--GLDYWGSVTLKVW 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L++   +         R R      L+ K     L      G    I+FG+E  GL  
Sbjct: 66  QRLEQVWQEF-------PRGRFF---YLSTKAGRSYLAADFRPGD--FIVFGKETKGLPA 113

Query: 135 EEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMENS 172
           E +   S   I+ P+      SLN+S +  ++++E +  +
Sbjct: 114 EILEWNSETAITIPMPANAVRSLNLSTSAGIVLYEALRQA 153


>gi|322517473|ref|ZP_08070346.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123955|gb|EFX95514.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 179

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G +AR     N + L ++ P      +K    +       D + +  +
Sbjct: 16  IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 72

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL + ++          +N      ++          E    G++   +FGRE  GL  
Sbjct: 73  DNLADFMS----------KNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLP- 121

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    I  P+N     SLN+S  V ++V+E +   
Sbjct: 122 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 162


>gi|262037571|ref|ZP_06011027.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
 gi|261748393|gb|EEY35776.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
          Length = 156

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 33/174 (18%)

Query: 17  IILVDPQLGENIGMVARAM---WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR- 72
           I+L++P++  N G + R           +L L+ P      EKA   S         V+ 
Sbjct: 3   IVLLNPEIPYNTGNIGRTCVLTKT----KLHLIKPLGFSLDEKAVKRS--GLDYWKDVQL 56

Query: 73  -VFSNLK----EAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V+ + +    E I +  ++  +ATT   R                   +  G+N  ++F
Sbjct: 57  YVWEDFEHFFKENIENRNVNLYFATTKTKRRYS---------------DVNYGKNDYVMF 101

Query: 126 GRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           G E  G+  E +       I+ P+ PL  SLN+S +  ++++E +  +    EK
Sbjct: 102 GPESRGIPEEILNRYKENNITIPMLPLGRSLNLSNSAAIILYEALRQNDFEYEK 155


>gi|304385180|ref|ZP_07367526.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
 gi|304329374|gb|EFL96594.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
          Length = 172

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 19/173 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P     S+K    +       DSV+V  
Sbjct: 5   IVLFEPLMPANTGNIARTCA--GTNAVLHLIKPLGFEISDKTLKRA--GLDYWDSVKVVY 60

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERWG 131
             NL + +A        T ++R     V      A    +   +  +V    +FG+E  G
Sbjct: 61  HDNLPDFLA--------TVKDRKRLFVVSKFASKAYTQADYTGAEDDVDNYFLFGKETTG 112

Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           L    +   ++  I  P N     +LN+S +V ++++E +      + +   E
Sbjct: 113 LPEAFMRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQQEFPNLEISHE 165


>gi|299537613|ref|ZP_07050906.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus fusiformis ZC1]
 gi|298726982|gb|EFI67564.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus fusiformis ZC1]
          Length = 157

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 29/166 (17%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +        SV + 
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRA--GLDYWHSVNIV 59

Query: 75  --SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +L++ I      D++               +    +     N+     +++  +FG+
Sbjct: 60  YHDSLEDFIEYSKNGDVYL--------------IETYSDEPFTKNDFSDQDRDIYFMFGK 105

Query: 128 ERWGLTNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL  +      +  +  P +    SLN+S    ++++E +   
Sbjct: 106 ETTGLPKDFAYERRDMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151


>gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15]
          Length = 280

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 20/188 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P   +     V +L   +   N+G + R +  F ++ + +   R    S  A  +S  A 
Sbjct: 103 PPPNSGKPNLVFVLDGVEDPHNLGAIVRTLGFFGVSAVAIPKDRAAALSPVAAKASVGAL 162

Query: 66  CVIDSVRVFSNLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
               SV   +NL   +       +++      +RN  +              ++   + +
Sbjct: 163 EWF-SVVRVTNLHRFLERQKKRGYWVVGLDGASRNPLR--------------QLEWDRPL 207

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            ++ G E  GL        + ++S P  P   SLN+S A  +  +    N++   E    
Sbjct: 208 MVVLGAEGSGLRPLTKRTCDWLVSIPGTPEVESLNVSNAAAVTCYHLR-NTVSVPEFATP 266

Query: 182 EQNTPATK 189
            +  PA  
Sbjct: 267 LKTAPADH 274


>gi|239998937|ref|ZP_04718861.1| putative RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|240080778|ref|ZP_04725321.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|240112855|ref|ZP_04727345.1| putative RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240117904|ref|ZP_04731966.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|240123463|ref|ZP_04736419.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240125708|ref|ZP_04738594.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 261

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG   +L   Q   N+G V R+     +  + L        S K   +   A  ++D   
Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167

Query: 73  VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++S  +L+  +A     ++AT  R                 L E          +FG E 
Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260


>gi|116053273|ref|YP_793597.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588494|gb|ABJ14509.1| putative RNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 153

 Score = 76.3 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G + R   N   + L L+ P      +K    +        SVR + +
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+   EA+        TT  +R                   +   +    +FG E  GL 
Sbjct: 63  LQSCLEALGQSRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107

Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E++  +   +  +  P+     SLN+S  V + V+E    
Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147


>gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 248

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 11/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q+  +  VIIL       N+G V+R+        + + N R          SSA A   +
Sbjct: 95  QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +V +           +  T +R +     +    E A  L  +      + ++ G E
Sbjct: 155 PVAQVSN-----------LVQTMSRLKEEGFWIAGATEHASDLIWKANLKGKIALVMGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + G++   +   + ++  P+     SLN++QA    ++E +  
Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQ 246


>gi|238789575|ref|ZP_04633359.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
 gi|238722328|gb|EEQ13984.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
          Length = 167

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 5/157 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        +++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +  +   +   A +   ++     L  K           +     ++FG E  GL    
Sbjct: 63  YQAFLDSENLDGAQSTGPQSARLFALTTKGTPAHSAVSYQANDY--LLFGPETRGLPPFV 120

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 121 LDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 157


>gi|191637805|ref|YP_001986971.1| Putative rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227535616|ref|ZP_03965665.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631168|ref|ZP_04674199.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065930|ref|YP_003787953.1| putative rRNA methylase (SpoU class) [Lactobacillus casei str.
           Zhang]
 gi|190712107|emb|CAQ66113.1| Putative rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227186746|gb|EEI66813.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239525633|gb|EEQ64634.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438337|gb|ADK18103.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei str.
           Zhang]
 gi|327381871|gb|AEA53347.1| TrmH family RNA methyltransferase [Lactobacillus casei LC2W]
 gi|327385033|gb|AEA56507.1| TrmH family RNA methyltransferase [Lactobacillus casei BD-II]
          Length = 169

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N + L L+ P      +K    +         VR+   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWQRVRIIYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L +         AT    ++ +       +      +     Q+   +FG+E  GL  
Sbjct: 62  DSLDD-------FMATVKEPQHLYLITKFADQT-YSDRDYADIDQDHYFLFGKETTGLPE 113

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   ++  +  P+     +LN+S    L+++E +   
Sbjct: 114 GFMRDHADQCLRIPMTDNVRALNLSNCAALVIYEALRQQ 152


>gi|90414908|ref|ZP_01222872.1| putative rRNA methylase, SpoU family protein [Photobacterium
           profundum 3TCK]
 gi|90323964|gb|EAS40560.1| putative rRNA methylase, SpoU family protein [Photobacterium
           profundum 3TCK]
          Length = 154

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73
           I L +P++  N G + R   N     L L+ P      EK    +    +    +   + 
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKD 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F+  KEA+        TT     +              N +   G    +IFG E  GL 
Sbjct: 63  FAAFKEAMVGRRLFACTTKTTNYHT-------------NAQFAEGD--VLIFGPETRGLP 107

Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E I        +  P++P   SLN+S A  ++ +E    
Sbjct: 108 AEFIESLPLEQRLRIPMHPDSRSLNLSNAAAIIGYEAWRQ 147


>gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 177

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 9/165 (5%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + ++K P V++L + +   N+G V R+   F +  + L       PS +   ++  A+
Sbjct: 16  EFKAASKLPLVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAE 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +   + F+   +A+ +LH      A     F          +   E    G+   ++ 
Sbjct: 76  DSVTW-KYFAETSDAVDELH------ANGTKVFAVEQVANATMLQSLE-TKGGERYAVVL 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+    +   +  +  P      SLN+S A  ++VWE  +
Sbjct: 128 GNEVKGVQQTVVDRCDGCLEIPQFGTKHSLNVSVAAGIVVWEFAK 172


>gi|312864593|ref|ZP_07724824.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
           F0415]
 gi|311099720|gb|EFQ57933.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
           F0415]
          Length = 182

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L +PQ+  N G +AR     N + L ++ P     +++    +       D   +R +
Sbjct: 20  VVLFEPQIPANTGNIARTCAATN-SPLHIIRPMGFPINDRKMKRA--GLDYWDKLDIRFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +                   +++               Q+   IFGRE  GL  
Sbjct: 77  DSLLEFLDKCQ-----------GQVHLVSKFAQKTYSEVNYADDQDHYFIFGREDKGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           + +       I  P+N     SLN+S  V ++V+E +   
Sbjct: 126 DFMREHVTKAIRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165


>gi|262166702|ref|ZP_06034439.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223]
 gi|262170375|ref|ZP_06038053.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451]
 gi|261891451|gb|EEY37437.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451]
 gi|262026418|gb|EEY45086.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223]
          Length = 158

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 13/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               +  L        R R  F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFVEYLQ-------RERGTFRLFACTTKTTQHHVDAKFQQGD--VLMFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            IA   +   I  P+ P   SLN+S AV ++ +E    
Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|269218394|ref|ZP_06162248.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212253|gb|EEZ78593.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 162

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+  +P++  N G   R       T L LV P      +     +      +  +R+ ++
Sbjct: 9   IVFYEPRIPGNTGAAIRLAACTGAT-LHLVEPLGFSFEDSHLKRAGLDYHDLADLRIHAD 67

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  + +L    I+A T    N+F                +   +    +FG E  GL  
Sbjct: 68  FEALLRELPDSRIFAFTGHTSNSF--------------ADVAYRETDAFLFGPEPTGLPA 113

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + IA     A +  P+ P   SLN++ +  ++V+E    
Sbjct: 114 DVIAHPAVTAAVRIPMMPHLRSLNLANSASIVVYEAWRQ 152


>gi|319638738|ref|ZP_07993497.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
 gi|317399979|gb|EFV80641.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
          Length = 154

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            I+L  P++  N G + R   N     L LV P            +       +  +  V
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLTV 59

Query: 74  FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             N ++ +   +   I+A T +          P E +          +   ++FG E  G
Sbjct: 60  HENFEDCLKALEGRRIFALTTKGSTR------PDEVSFR--------EGDVLLFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +    +   I  P+ P   S+N+S  V ++++E    
Sbjct: 106 LPAEILDSLPAGQKIRLPMMPGSRSMNLSNTVAVILFEAWRQ 147


>gi|317121641|ref|YP_004101644.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
 gi|315591621|gb|ADU50917.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
          Length = 153

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV P++  N G VAR        +L LV P     S++    +       + V   V 
Sbjct: 4   VVLVAPEIAPNTGNVARTCAVTG-ARLHLVRPLGFRLSDRLLKRA--GMDYWNHVEWHVH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               E +          A         L P  +    +     G    ++FG E  GL  
Sbjct: 61  DTWDELL----------AALPEARFCYLEPDGSQRYTDVTFRPGD--ALVFGSESRGLPP 108

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +       +  P+ P   SLN++  V L+++E    
Sbjct: 109 EFLRQRPGPTLRVPMRPGLRSLNLASTVALVLYEAYRQ 146


>gi|169825957|ref|YP_001696115.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus sphaericus C3-41]
 gi|168990445|gb|ACA37985.1| Hypothetical tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus sphaericus C3-41]
          Length = 157

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +        SV + 
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRA--GLDYWHSVNIV 59

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++L + I          +R+ + +  +    +     ++     +++  +FG+E  GL
Sbjct: 60  YHNSLDDFIE--------YSRDGDVYL-IETYSDEPFTTHDFSNKERDIYFMFGKETTGL 110

Query: 133 TNE-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +      N  +  P +    SLN+S    ++++E +   
Sbjct: 111 PKDFAYERRNMCLRIPQSDHVRSLNLSNTAAIVIYEALRQQ 151


>gi|55820364|ref|YP_138806.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55822253|ref|YP_140694.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|55736349|gb|AAV59991.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMG
           18311]
 gi|55738238|gb|AAV61879.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
           CNRZ1066]
          Length = 184

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 23/181 (12%)

Query: 1   MTPYAPQL----QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
           MTP         ++      I+L +P++ +N G +AR     N + L ++ P      +K
Sbjct: 1   MTPGDMAFFMSRRSQMSRNHIVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDK 59

Query: 57  ARSSSANADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
               +       D + +  + NL + ++          +N      ++          E 
Sbjct: 60  KMKRA--GLDYWDKLDITYYDNLADFMS----------KNHAGRLHLVTKFADKTYSEEV 107

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
              G++   +FGRE  GL  E+    +    I  P+N     SLN+S  V ++V+E +  
Sbjct: 108 YADGEDHYFMFGREDTGLP-EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQ 166

Query: 172 S 172
            
Sbjct: 167 Q 167


>gi|238783969|ref|ZP_04627985.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
 gi|238715077|gb|EEQ07073.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
          Length = 167

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 15/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        S++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHD 62

Query: 77  LK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +     E +       AT AR       + A        +  +    N  ++FG E  G
Sbjct: 63  YQAFLDSEKLDGAQSAGATPAR-------LFALTTKGTPAHSAVSYQANDYLLFGPETRG 115

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    + +  +   I  P+     S+N+S AV ++V+E    
Sbjct: 116 LPARVLDVLPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 157


>gi|227519599|ref|ZP_03949648.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227554157|ref|ZP_03984204.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229544948|ref|ZP_04433673.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229549215|ref|ZP_04437940.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255971931|ref|ZP_05422517.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|256616829|ref|ZP_05473675.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256763295|ref|ZP_05503875.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256853968|ref|ZP_05559333.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256957897|ref|ZP_05562068.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256961082|ref|ZP_05565253.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256963776|ref|ZP_05567947.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|257079834|ref|ZP_05574195.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|257081820|ref|ZP_05576181.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|257084362|ref|ZP_05578723.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|257087639|ref|ZP_05582000.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257416846|ref|ZP_05593840.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
 gi|257420063|ref|ZP_05597057.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|257421760|ref|ZP_05598750.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|293384028|ref|ZP_06629922.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           R712]
 gi|293386841|ref|ZP_06631411.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           S613]
 gi|294779486|ref|ZP_06744882.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           PC1.1]
 gi|300860577|ref|ZP_07106664.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TUSoD Ef11]
 gi|307270625|ref|ZP_07551916.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4248]
 gi|307271723|ref|ZP_07552994.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0855]
 gi|307276907|ref|ZP_07558017.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2134]
 gi|307287517|ref|ZP_07567560.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0109]
 gi|307290328|ref|ZP_07570243.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0411]
 gi|312908022|ref|ZP_07767005.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 512]
 gi|312953690|ref|ZP_07772527.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0102]
 gi|312978450|ref|ZP_07790188.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 516]
 gi|227072949|gb|EEI10912.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227176699|gb|EEI57671.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229305452|gb|EEN71448.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|229309840|gb|EEN75827.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|255962949|gb|EET95425.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|256596356|gb|EEU15532.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256684546|gb|EEU24241.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256710911|gb|EEU25954.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256948393|gb|EEU65025.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256951578|gb|EEU68210.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256954272|gb|EEU70904.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|256987864|gb|EEU75166.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|256989850|gb|EEU77152.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|256992392|gb|EEU79694.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|256995669|gb|EEU82971.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257158674|gb|EEU88634.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
 gi|257161891|gb|EEU91851.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|257163584|gb|EEU93544.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|291078508|gb|EFE15872.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           R712]
 gi|291083675|gb|EFE20638.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           S613]
 gi|294453443|gb|EFG21849.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           PC1.1]
 gi|300849616|gb|EFK77366.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498521|gb|EFM68023.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0411]
 gi|306501255|gb|EFM70558.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0109]
 gi|306506330|gb|EFM75490.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2134]
 gi|306511601|gb|EFM80600.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0855]
 gi|306512935|gb|EFM81576.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4248]
 gi|310626113|gb|EFQ09396.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 512]
 gi|310628528|gb|EFQ11811.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0102]
 gi|311288599|gb|EFQ67155.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 516]
 gi|315025562|gb|EFT37494.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2137]
 gi|315030285|gb|EFT42217.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4000]
 gi|315032790|gb|EFT44722.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0017]
 gi|315035173|gb|EFT47105.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0027]
 gi|315143811|gb|EFT87827.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2141]
 gi|315148633|gb|EFT92649.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4244]
 gi|315149956|gb|EFT93972.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0012]
 gi|315151957|gb|EFT95973.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0031]
 gi|315155539|gb|EFT99555.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0043]
 gi|315159161|gb|EFU03178.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0312]
 gi|315162160|gb|EFU06177.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0645]
 gi|315164915|gb|EFU08932.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1302]
 gi|315168781|gb|EFU12798.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1341]
 gi|315173728|gb|EFU17745.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1346]
 gi|315573839|gb|EFU86030.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0309B]
 gi|315580410|gb|EFU92601.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0309A]
 gi|323481593|gb|ADX81032.1| SpoU rRNA Methylase family protein [Enterococcus faecalis 62]
 gi|327535888|gb|AEA94722.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329577392|gb|EGG58847.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1467]
          Length = 168

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 5   IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
            +L   +A +                ++               G++   +FG+E  GL  
Sbjct: 62  KDLAAFLAHVA----------GKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       I  P+N     SLN+S    L+V+E +   
Sbjct: 112 TFMRENEE-----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQ 151


>gi|317485782|ref|ZP_07944647.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316922956|gb|EFV44177.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 151

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           ++L  P++  N G VAR      ++ L L+ P  G+  E      A  D      + V+ 
Sbjct: 3   VVLFQPEIPPNTGNVARLCAAMQVS-LHLIEPL-GFKLEDRYLKRAGLDYWPHVDMAVWP 60

Query: 76  NLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +L   I +      +  T+AR                    R    +N  ++FGRE  GL
Sbjct: 61  DLDAYIRNSGAGRRLVLTSARRGAALH--------------RFEFTENDSLVFGRETSGL 106

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             E I LS   +  P+     S+N+S A  +++++ + ++ +  E
Sbjct: 107 PPEVIGLSPHHVRIPIKGEVRSINLSTAAGIVLFQALVSAGLVGE 151


>gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 248

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 11/162 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N  +  V+IL       N+G +AR+        L + N R          SSA A   + 
Sbjct: 96  NGGRALVVILDHLTDAGNLGAIARSAEAVGACGLVIPNKRSAKVDASTYKSSAGAIAHLP 155

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  NL + +          AR +     V    E    +  R      + ++ G E 
Sbjct: 156 VAQV-PNLVQVM----------ARLKERGFWVAGASEQTDDVIWRSNLKGKIALVMGNEA 204

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL+       + ++  P      SLN++QA    ++E +  
Sbjct: 205 EGLSRVVKESCDFLVKLPQMGEVASLNVAQASTACMYEWLRQ 246


>gi|187736063|ref|YP_001878175.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426115|gb|ACD05394.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 154

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I++  P++  N G   R       ++L L+ P      EK    +         V   V+
Sbjct: 7   IVMFHPEIPHNTGAAGRLALATG-SRLHLIKPLGFSLDEKHVRRT--GLDYWAKVDLHVW 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E            A     F   L+ K      +    +G    ++FG E  GL  
Sbjct: 64  DSLEELKQ--------AAAPGAQFW-YLSTKAPRSHWDAVFHAGDY--LVFGPESRGLPE 112

Query: 135 EEI-ALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172
             +   ++  ++ P+      SLN+S AV ++++E +  +
Sbjct: 113 SMLREHADTALTIPMPGEGARSLNLSTAVAVVLYEGLRQT 152


>gi|261254104|ref|ZP_05946677.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260937495|gb|EEX93484.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 158

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 56/173 (32%), Gaps = 29/173 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N     L L+ P      EK    +       D  RV   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60

Query: 74  ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                    L++          TT   +     V A  +   VL            +FG 
Sbjct: 61  KDYQAFVEYLEKEREGYRIFACTT---KTTGHHVDANFQKGDVL------------LFGP 105

Query: 128 ERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  GL  E I        I  P+ P   SLN+S AV ++ +E          +
Sbjct: 106 ETRGLPAELIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158


>gi|24380081|ref|NP_722036.1| putative rRNA methylase [Streptococcus mutans UA159]
 gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159]
          Length = 182

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  PQ+  N G +AR     N T L ++ P      +K    +       D + V  +
Sbjct: 20  VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRA--GLDYWDKLDVHFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +                   ++         +E     ++   +FGRE  GL  
Sbjct: 77  DSLNDFMNICS-----------GKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E +   S   +  P+N     SLN+S  V ++V+E +   
Sbjct: 126 EFMRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165


>gi|134297042|ref|YP_001120777.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134140199|gb|ABO55942.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           vietnamiensis G4]
          Length = 156

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAEMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  DWDAFVAAESPDPTRMFAFTTRGSGRFHDHAFVPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPAELLERFPGEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|312277678|gb|ADQ62335.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus
           ND03]
          Length = 169

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G +AR     N + L ++ P      +K    +       D + +  +
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL + ++          +N      ++          E    G++   +FGRE  GL  
Sbjct: 63  DNLADFMS----------KNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLP- 111

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    I  P+N     SLN+S  V ++V+E +   
Sbjct: 112 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 152


>gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
 gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
          Length = 291

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 12/171 (7%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           Q + ++  PVI++        N+G + R         L +   R    +      +A A 
Sbjct: 129 QAKANSDAPVIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVAAGAL 188

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                 RV  NL  A+  L          +  F       E    L++  F G  +G++ 
Sbjct: 189 ESFPVARVV-NLSRALETL---------KKEGFWIYGTVAEGGKRLHDFNFEGA-IGLVI 237

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  GL+       + ++S P+    PSLN S A  + ++E         
Sbjct: 238 GSEGSGLSLLTQRCCDQLVSIPLEGKTPSLNASVAAAINLYEIYRQRWSEK 288


>gi|320093952|ref|ZP_08025781.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979110|gb|EFW10624.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 287

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 16/186 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+   +   N+G + R        +  L V       S K   +SA +   +  V    
Sbjct: 113 VIIAQGRDPGNVGTIIRTADAMG-ARAVLTVAGTADVTSPKVVRASAGSVFHLP-VIPHP 170

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               A+  LH     +  T+   R               + E            G E  G
Sbjct: 171 AFGAAVDALHARGARVLGTSGGPRAVPLP---------AVEEEGALAGPHAWALGNEARG 221

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           L  +E+A  + +++ P+  L  SLN++ A  + ++               +    A  G 
Sbjct: 222 LDADEVAACDLLVAIPMTGLAESLNVASAAAVCLYASQRARGTGRPDGAVDGRGGARAGT 281

Query: 192 LLSFLD 197
           ++ + D
Sbjct: 282 VVRWHD 287


>gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307]
 gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307]
          Length = 152

 Score = 75.9 bits (186), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 24/164 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+LV+P++  N G +AR       T L LV P     +++    +         V + 
Sbjct: 2   PQIVLVEPEIPPNTGNIARTCAATE-TPLHLVEPLGFEINDRQLKRA--GLDYWPHVPLV 58

Query: 75  --SNLKEAIADLHFIYATTAR----NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             S+  E +         + R    +R+  +S L     A              +IFG E
Sbjct: 59  QHSSWGEFLKHHQHH---SGRLLGFSRHASRSYLEIDYRADDW-----------LIFGCE 104

Query: 129 RWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
             GL  E  A  + ++  P+      SLN+S A  ++++E    
Sbjct: 105 TKGLAPEVQANCDDLLLIPMTCSAVRSLNLSVAAAVVLFESRRQ 148


>gi|300714677|ref|YP_003739480.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
 gi|299060513|emb|CAX57620.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
          Length = 157

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +      +D    +  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAG-----LD----YHE 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                    +    +A      + + A        +  +       ++FG E  GL  + 
Sbjct: 54  FTAIKHHADYAAFLSA---EAPQRLFALTTKGTPAHSAVSYQPGDYLLFGPETRGLPADI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LNALPAQQKIRIPMQPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|113954223|ref|YP_730533.1| rRNA methylase [Synechococcus sp. CC9311]
 gi|113881574|gb|ABI46532.1| Predicted rRNA methylase [Synechococcus sp. CC9311]
          Length = 176

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 28/168 (16%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SV 71
           K   + L +P++  N G +AR    F L  L L+ P  G+  E      A  D      +
Sbjct: 18  KPLRVALFEPRIPPNTGNIARTCAAFGLP-LDLIEPL-GFSLEDRYLKRAGLDYWPHVDL 75

Query: 72  RVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  ++    E++A    +   + R               I+L    F   +V ++FGRE
Sbjct: 76  TIHKDVDAFFESLAQPSRVIGCSRRG-------------GILLRNMEFQKGDV-LLFGRE 121

Query: 129 RWGLTNEEIALSNAIISF--PVN------PLFPSLNISQAVLLMVWEC 168
             GL     +  + I +   P +          SLN+S A  ++  + 
Sbjct: 122 DTGLPETIRSRCHQITTISMPCSAGEDGQGGVRSLNLSVACAIVSHQA 169


>gi|251791594|ref|YP_003006315.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
 gi|247540215|gb|ACT08836.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
          Length = 154

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +PQ+  N G + R   N   + L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPQIAPNTGNIIRLAANNGCS-LHLIEPLGFDFEEKKLRRA--GLDYHDLANVSRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  +A+A       TT  +R   +    P +  +  +E     + +   F  E   
Sbjct: 61  RNYQDFLQAVAGQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPEAIRNGFAPENR- 119

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                       I  P+ P   SLN+S +V ++ +E    
Sbjct: 120 ------------IRIPMEPDCRSLNLSNSVAIISYEAWRQ 147


>gi|57504963|ref|ZP_00370915.1| rRNA methylase [Campylobacter coli RM2228]
 gi|305432038|ref|ZP_07401205.1| TrmH family RNA methyltransferase [Campylobacter coli JV20]
 gi|57019235|gb|EAL55941.1| rRNA methylase [Campylobacter coli RM2228]
 gi|304445122|gb|EFM37768.1| TrmH family RNA methyltransferase [Campylobacter coli JV20]
          Length = 155

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L+ P++ +N G + R  +N    +L +V P     S+KA   +       + +   ++
Sbjct: 4   IVLIHPRIPQNTGSIGRMCFNAGF-KLHIVKPIVFDISQKAVRRA--GLDYWEKLEPVIW 60

Query: 75  SNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +L   +         F +ATT  N+  F               +    +N  + FG E 
Sbjct: 61  ESLDIFLEHNLIYKDRFFFATTKSNKFYF---------------QAKFQENDFLFFGSES 105

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +GL  E + L+ +  I+ P+     SLN++ +V ++ +E +  
Sbjct: 106 YGLPMELMQLNWDNAITIPMKACGRSLNLATSVGIVSYEALRQ 148


>gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140]
          Length = 261

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG   +L   Q   N+G V R+     +  + L        S K   +   A  ++D   
Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167

Query: 73  VF--SNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++  ++L+  +A     ++AT  R                 L E          +FG E 
Sbjct: 168 IYLQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260


>gi|319946468|ref|ZP_08020705.1| RNA methyltransferase [Streptococcus australis ATCC 700641]
 gi|319747436|gb|EFV99692.1| RNA methyltransferase [Streptococcus australis ATCC 700641]
          Length = 180

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 17/172 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N   L ++ P      ++    +       D   VR +
Sbjct: 17  VVLYQPQIPQNTGNIARTCAATNAP-LHIIRPMAFPIDDRKMKRA--GLDYWDKLDVRFY 73

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +       ATT         +++        N           IFGRE  GL  
Sbjct: 74  DSLDEFME------ATTG----GKVHLVSKFADQTYSNVNYNDNLEHYFIFGREDKGLPE 123

Query: 135 EEIAL-SNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           + + L +   I  P+N     SLN+S  V ++V+E +     +  + V + +
Sbjct: 124 DFMRLHAEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQEFAGLELVHQYD 175


>gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 247

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 23/155 (14%)

Query: 26  ENIGMVARAMWNFNLTQLR--LVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
            N G +AR+     +  +   LVN      +  A   SA A   + SV   SN+  A+  
Sbjct: 108 HNFGAIARSCECAGVNAIVIPLVNSVSV--NADAIKISAGALMSL-SVCRESNIMNAVKF 164

Query: 84  LHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           L      +YA T              E A  L  +        I+ G E  G++   + L
Sbjct: 165 LKLCGYKVYAAT--------------EKATTLYTKTDYTYPTAIVIGSEDKGISPAVLYL 210

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            + ++  P      SLN+S A  ++++E +     
Sbjct: 211 CDKLVKIPTLGNITSLNVSAATAVLLYEVLRQRTT 245


>gi|325518166|gb|EGC97941.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 156

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N    +L L+ P  G+P + A+   A  D      ++V  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMQVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  DWDAFVAAESPDPARMFAFTTRGSGRFHDHAFLPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL+ + +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLSADVLERFANEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|290579940|ref|YP_003484332.1| putative rRNA methylase [Streptococcus mutans NN2025]
 gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025]
          Length = 182

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  PQ+  N G +AR     N T L ++ P      +K    +       D + V  +
Sbjct: 20  VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRA--GLDYWDKLDVHFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +                   ++         +E     ++   +FGRE  GL  
Sbjct: 77  DSLNDFMNICS-----------GKLHLITKFADKTYSDENYDDSEHHYFLFGREDKGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E +   S   +  P+N     SLN+S  V ++V+E +   
Sbjct: 126 EFMRQHSEKALRIPMNDQHVRSLNLSNTVCMIVYEALRQQ 165


>gi|307109015|gb|EFN57254.1| hypothetical protein CHLNCDRAFT_21737 [Chlorella variabilis]
          Length = 201

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 18/154 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  V R+        L ++        +++  S+A AD  +D V+VF++ +E + +  
Sbjct: 60  GNLAAVCRSADALGFGALHVIRNTRDERYKQSTRSAAGADKWLD-VQVFNSTEECVLNAK 118

Query: 86  F----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                + AT           L+P     V   +I   +    I G E+ G++ E +AL++
Sbjct: 119 RLGYQVVAT----------HLSPD---AVDISQIDWTRPTAFIMGNEKRGVSCEAVALAD 165

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           A    P+     S N+S A  L+++E       +
Sbjct: 166 ACAVVPMVGFVDSYNLSVAAALIMYEARRMREQA 199


>gi|297571488|ref|YP_003697262.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931835|gb|ADH92643.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 158

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
            +  +P++  N G   R        +L L+ P      +     +      +  V +  N
Sbjct: 4   FVFHEPKIPGNTGNAIRLAACTG-ARLHLIEPLAFNFDDAHLRRAGLDYHDLADVVIHPN 62

Query: 77  LKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + A     D   ++A T+   NN+             +E+   G    ++FG E  GL 
Sbjct: 63  WEAAKEYFGDDRRVFAFTSHTENNY------------ADEQYQDGDI--LLFGTEPTGLP 108

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           +E +        +  P+ P   SLN++ +  ++V+E        S   +
Sbjct: 109 DEVLNDPYLTKHLRIPMLPGRRSLNLANSASIVVYEAWRQLGFPSAAPI 157


>gi|261211259|ref|ZP_05925548.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341]
 gi|260839760|gb|EEX66371.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341]
          Length = 158

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 13/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               I  L        R R  F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFIDYLQ-------RERETFRLFACTTKTTQHHVDAQFQQGD--VLMFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            IA   +   I  P+ P   SLN+S AV ++ +E    
Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|302804009|ref|XP_002983757.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii]
 gi|300148594|gb|EFJ15253.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii]
          Length = 264

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 10/152 (6%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NI  V R    F L  + ++   D    ++AR+ S  A+  +D V V+ N  E      
Sbjct: 83  GNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNISMGAEKWLD-VEVWENTNE----CV 137

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
            +     R+R    +V       + ++E +       +IFG E  G + E +AL++    
Sbjct: 138 QVL----RSRGYRIAVTDMGADTVPIHE-LDWTIPTAVIFGNEHNGTSEEALALADVKCH 192

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            P+  +  S N+S A  ++++  + + +  + 
Sbjct: 193 IPMVGMVESFNVSVAAGILMYHIVGDRLERTG 224


>gi|309792699|ref|ZP_07687150.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
 gi|308225248|gb|EFO79025.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
          Length = 267

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 12/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L++P    N+G + R       + + L++         A  +S  A   +  VR  + 
Sbjct: 117 VALLEPADPGNLGTILRTADAVGASGVMLLDHATDPYDPAALRASMGAIFALQVVR--AT 174

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             E            A  R     ++   + A    + +   Q + ++ G ER GL+ ++
Sbjct: 175 FAE----------FAAWKRAQGIFLVGAADKAPTHYQDLVYPQPLVLLMGSERQGLSPDQ 224

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            AL + ++  P+     SLN++ A  ++++E +  S
Sbjct: 225 QALCDQMVHLPMCGRSDSLNLAVATGVLLYELLSQS 260


>gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1]
 gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1]
          Length = 246

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 10/165 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++ + +  ++IL   +   N+G + R+   F    + L   R    +  A  +SA A   
Sbjct: 90  VEKAKQPLLVILDGVEDPHNLGAIMRSAEAFGALAVILPKDRTAPLNAGAIKASAGAAER 149

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +D +RV +NL  AI  L          + N   +    EA   L   +     + ++ G 
Sbjct: 150 LDLIRV-TNLARAIEQLQ---------QRNVWVIGLAGEAGAPLIGTLDCKGPLALVMGN 199

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL        + + + P+     SLN+S A  + ++E +   
Sbjct: 200 EGSGLRRLTRERCDQLAAIPMGGGVGSLNVSVATGVALYEVLRQR 244


>gi|209519808|ref|ZP_03268593.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
 gi|209499751|gb|EDZ99821.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
          Length = 156

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P      +     +       +     V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPLGFPLDDTKMRRA--GLDYHEYAEMNVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++    IA    D   ++A T R    F      P +                 +FG E 
Sbjct: 61  ADWDAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDW---------------FVFGAET 105

Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL    +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 106 RGLPGAVLERFPDEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 218

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 13/160 (8%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +L++      N+  + R      +  L +VN    +P+    S  +        +  + +
Sbjct: 22  VLIEDVHKPHNLSAIIRTCDAVGILDLHVVNQNGKYPT---FSKVSQGSEKWVFITTYIS 78

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + +AI          A  R  FK   A      +    +   + V I+ G E+WG++ E 
Sbjct: 79  IDDAIN---------ALKRRKFKIYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEA 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             L +  I+ P+  +  SLN+S A  ++++E     + + 
Sbjct: 130 AQLVDGHITIPMLGMVQSLNVSVAAAVILFEAQRQRLEAK 169


>gi|209523630|ref|ZP_03272184.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
 gi|209496035|gb|EDZ96336.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
          Length = 157

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 26/165 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           P ++LV+PQ+ +N G +AR       T L LV P     S++    +         V  +
Sbjct: 6   PQLVLVNPQIPQNTGNIARTCAAT-QTPLHLVGPLGFEISDRYLKRA--GLDYWPYVPLK 62

Query: 73  VFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             +++++  A        ++   +AR + N+ S                  +N  ++FG 
Sbjct: 63  YHTHIEDFQAFHQPLGGRWV-GFSARGKQNYVSFQF--------------QENDWLLFGS 107

Query: 128 ERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           E  GL  E +AL  A +  P+  P   SLN+S +  + ++E    
Sbjct: 108 ETEGLPPEVLALCQATVYIPMCQPNVRSLNLSVSAAVGLFEARRQ 152


>gi|118602767|ref|YP_903982.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567706|gb|ABL02511.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 153

 Score = 75.9 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 18/165 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           +L +P++  N G + R   N     LRL+ P      +K    +       + + V  + 
Sbjct: 5   VLFEPEIPNNTGAIIRLCANMG-ANLRLIKPYGFEMEDKKLRRA--GLDYKELMCVSEYD 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N  + +             +   K++         +   +       ++ G E  GL  +
Sbjct: 62  NFDDYLE------------KEKPKNLFVVSSKVKTIYTDVKYQAGDSLLLGPETRGLPQD 109

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            +      I+ P+     SLN+S    ++ +E          K+ 
Sbjct: 110 ILNQ-YKGITLPMQDKSRSLNLSNCASIVAYEAWRQIGFKGAKSA 153


>gi|269468203|gb|EEZ79896.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 152

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 22/158 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L +P++  N G + R   N   + L L+ P     ++K    +       +  RV+   
Sbjct: 5   VLFEPEIPNNTGSLIRLSANMGAS-LHLIKPFGFEITDKRLRRA--GLDYKELARVYEYE 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           N ++ +A      ++A +++ +        P+  +               +FG E  GL 
Sbjct: 62  NFEDYLAKAKPERLFAVSSKVKQI---YTDPEYQSGD-----------SFLFGPETRGLP 107

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E +     I + P+     SLN+S  V ++ +E    
Sbjct: 108 REILDQYQGI-TLPMQAESRSLNLSNCVSIVAYEAWRQ 144


>gi|116494421|ref|YP_806155.1| rRNA methylase (SpoU class) [Lactobacillus casei ATCC 334]
 gi|116104571|gb|ABJ69713.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei ATCC
           334]
          Length = 169

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 14/159 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N + L L+ P      +K    +         VR+   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWQRVRIIYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L +         AT    +  +       +      +     Q+   +FG+E  GL  
Sbjct: 62  DSLDD-------FMATVKEPQYLYLITKFADQT-YSDRDYADIDQDHYFLFGKETTGLPE 113

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   ++  +  P+     +LN+S    L+++E +   
Sbjct: 114 GFMRDHADQCLRIPMTDNVRALNLSNCAALVIYEALRQQ 152


>gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           lwoffii SH145]
 gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           lwoffii SH145]
          Length = 249

 Score = 75.5 bits (185), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79
             N+G   R      +    ++ PRD     +  AR  +A     +  ++V +    L +
Sbjct: 108 PHNLGACIRTAAAMGVE--AVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQ 165

Query: 80  AIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
              D +  +  T          +L   E A+ +    F+G  V I+ G E  GL     +
Sbjct: 166 IKEDFNVRVVGT----------MLD--EKALPIQNFDFTGTGVCIVMGAEDTGLRPITQS 213

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +  +  P+     SLN+S A  + ++E     
Sbjct: 214 QCDQTVYIPMAGNLQSLNVSVATGMALYEACRQR 247


>gi|22299336|ref|NP_682583.1| SpoU rRNA methylase family [Thermosynechococcus elongatus BP-1]
 gi|22295519|dbj|BAC09345.1| SpoU rRNA Methylase family [Thermosynechococcus elongatus BP-1]
          Length = 153

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 13/158 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P ++LV PQ+  N G +AR       T L L+ P     S++    +         V ++
Sbjct: 2   PAVVLVHPQIPPNTGNIARTCAAT-QTPLHLIEPLGFELSDRYLKRA--GLDYWPYVTLY 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                     H  + T  +  +    ++A + AA  +       ++  ++FG E  G+  
Sbjct: 59  ---------CHPDWPTFLKTAHRHGRLIAFEPAAQQIYWDFTFAESDWLVFGSEPAGIPA 109

Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           + +A  +  +  P+  P   SLN+S +V + + E    
Sbjct: 110 DVLATCDVFLKIPMWQPAVRSLNLSVSVAIALMEVYRQ 147


>gi|254508192|ref|ZP_05120317.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus 16]
 gi|219548914|gb|EED25914.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus 16]
          Length = 158

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 56/173 (32%), Gaps = 29/173 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N     L L+ P      EK    +       D  RV   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60

Query: 74  ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                    L++   D      TT   +     V A      VL            +FG 
Sbjct: 61  KDYQAFVEYLEKERGDYRIFACTT---KTTGHHVDANFHKGDVL------------LFGP 105

Query: 128 ERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  GL  E I        I  P+ P   SLN+S AV ++ +E          +
Sbjct: 106 ETRGLPAELIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158


>gi|260587422|ref|ZP_05853335.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
 gi|331083702|ref|ZP_08332813.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542289|gb|EEX22858.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
 gi|330403913|gb|EGG83465.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 166

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 28/163 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R       T+L L+ P     +EKA   +           V  +
Sbjct: 6   IVLFEPEIPANTGNIGRTCVATG-TRLHLIEPLGFQLNEKALKRA--GMDYWKDLDVTTY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG--- 131
            N ++ +            +RN    V      A      +   ++  I+FG+E  G   
Sbjct: 63  INYQDFL------------DRNPGAKVYMATTKAPKTYVDVEYEEDCYIMFGKESAGIPE 110

Query: 132 ---LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              L N+E A     I  P+     SLN+S +V ++++E +  
Sbjct: 111 EILLENQETA-----IRIPMIGDIRSLNLSNSVAIVLYEALRQ 148


>gi|325917204|ref|ZP_08179431.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536594|gb|EGD08363.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC
           35937]
          Length = 158

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N    +L L+ P     S+K    +       +    +V 
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLSDKQLKRA--GLDYHEYATLQVH 64

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L  A+A +    ++A + R+          +       +          +FG E  GL
Sbjct: 65  ADLPTALAAIAPKRLFALSTRS--------TVRYDTPQFAD------GDAFLFGPETRGL 110

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +        +  P+ P   SLN+S  V +MV+E       +  +
Sbjct: 111 PAEVLESIPPQHRLRLPMRPDNRSLNLSNTVAVMVFEAWRQWNFAGGQ 158


>gi|315639717|ref|ZP_07894856.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315484494|gb|EFU74951.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 190

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 23/173 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P +  N G ++R     N   L L+ P      +K    +       D+V +   
Sbjct: 25  IVLYEPLIPANTGNISRTCAATNAP-LHLIEPLGFSTDDKHLKRA--GLDYWDAVDI--T 79

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTN 134
             +++AD               + +    + A      +     Q    +FG+E  GL  
Sbjct: 80  YHKSLADFLTYLG--------ERPLHLVTKFANQTYSEVNYADNQEHFFLFGKETTGLPE 131

Query: 135 ----EEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
               E +      I  P+N     SLN+S  V L+++E +        +    
Sbjct: 132 DFMRENVEKC---IRIPMNDEHVRSLNLSNTVALVLYEALRQQDFPKLEKAHH 181


>gi|282896206|ref|ZP_06304229.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
 gi|281198895|gb|EFA73773.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
          Length = 153

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 65/166 (39%), Gaps = 28/166 (16%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P ++L++PQ+  N G +AR       T+L LV P     +++    +         V++ 
Sbjct: 2   PQVVLINPQIPPNTGNIARTCAATA-TELHLVGPLGFEITDRYLKRA--GLDYWPHVKLN 58

Query: 74  -FSNLKEAIADLH-----FIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              +    +  +H      +   + R   N  +    P +                ++FG
Sbjct: 59  YHESYHTFLK-VHQQRGGRLLGFSVRGNINYIQHEFHPDDW---------------LLFG 102

Query: 127 RERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
            E  G+    + + ++ +  P++ P   SLN+S +V + ++E    
Sbjct: 103 SETTGIPKNILDICDSTLYIPMDQPGVRSLNLSVSVAVALFESRRQ 148


>gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
 gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  + R+     +  +  V P  G   ++  SS++          +   +++AIA   
Sbjct: 31  HNLSAIVRSADAVGIHHIHSVWPEGG---KRLTSSTSGGSKNWTENHIHHTVEDAIA--- 84

Query: 86  FIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                T R+R     +LA    E A+     I   +   II G+E++G++++ +AL++  
Sbjct: 85  -----TIRSRTPNVQILATHFSEQAVDFRA-IDYTRPTAIILGQEKFGISDQALALADQH 138

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I  P+  +  SLN+S A  ++++E  +    + 
Sbjct: 139 IIIPMVGMVQSLNVSVAAAIILYEAQKQRQDAG 171


>gi|225026878|ref|ZP_03716070.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
 gi|224955802|gb|EEG37011.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
          Length = 163

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R       + L L+ P     ++K    +       D   VR +
Sbjct: 4   IVLHEPEMPANTGNIGRTCVATG-SILHLIEPLGFKINDKMLKRA--GLDYWDKLDVRTY 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N ++ +A         ATT   +                   +       I+FG+E  G
Sbjct: 61  VNFEDFLAKNPGAKIYMATTKSKQTYT---------------DVEYEDGCYIMFGKESAG 105

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  EEI L +    +  P+     SLN+  +V ++++E +   
Sbjct: 106 IP-EEILLEHKETAVRIPMLEHIRSLNLGNSVAIVLYEALRQQ 147


>gi|332968421|gb|EGK07488.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 154

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 23/168 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            ++L  P++  N G + R   N     L LV P  G+P + ++   A  D      + V 
Sbjct: 3   TVVLYQPEIPPNTGNIIRLCANTGC-DLHLVKPL-GFPLDSSKMKRAGLDYHEFSQLTVH 60

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + ++   A+     I+A T +          P + A    +          +FG E  G
Sbjct: 61  ESWQDCWAALQG-KRIFALTTKGSTR------PDQVAFQAGD--------VFLFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  + +A   S   I FP+ P   S+N+S  V + V+E       +  
Sbjct: 106 LPTDILASLPSEQKIRFPMMPDNRSMNLSNTVAITVFEAWRQQGYAGG 153


>gi|307721129|ref|YP_003892269.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306979222|gb|ADN09257.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 156

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 25/168 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVFS 75
           +LV+PQ+  N G + R   N   T L L+ P      EKA   +       D   ++V+ 
Sbjct: 6   VLVNPQIPNNTGAIGRLCVNAGAT-LHLIKPIGFDIDEKAVRRA--GLDYWDKLDLKVWE 62

Query: 76  NLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           N++E         +  +ATT  +R                +     G    I FG E  G
Sbjct: 63  NIEEFFEHNDITCNAYFATTKTDR-------------PYFDADFKEGDY--IFFGSETKG 107

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +  + +    +  I+ P+     SLN++ +  +++++ +  +  + E+
Sbjct: 108 IPEDILNKYKSQNITIPMTKEGRSLNLAISTGIVLYDAIRQNYSTFEE 155


>gi|270291465|ref|ZP_06197687.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus
           acidilactici 7_4]
 gi|270280311|gb|EFA26147.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus
           acidilactici 7_4]
          Length = 172

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 19/173 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P     S+K    +       DSV+V  
Sbjct: 5   IVLFEPLMPANTGNIARTCA--GTNAVLHLIKPLGFEISDKTLKRA--GLDYWDSVKVVY 60

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERWG 131
             NL + +A        T ++R     V      A    +   +  +V    +FG+E  G
Sbjct: 61  HDNLPDFLA--------TVKDRKRLFVVSKFASKAYTQADYTGAEDDVDNYFLFGKETTG 112

Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           L    +   ++  I  P N     +LN+S +V ++++E +      + +   E
Sbjct: 113 LPETFMRQYADCAIRIPQNDQHIRALNLSNSVAIVIYEVLRQQEFPNLEISHE 165


>gi|171780246|ref|ZP_02921150.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281594|gb|EDT47029.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 181

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  PQ+ +N G +AR     N T L ++ P      ++    +       D + V  +
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDVIFY 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++++ +                   +++     +  +E    G +   +FGRE  GL  
Sbjct: 76  DSIEKFMEKCDGKV-----------HLISKFAEKVYSDENYNDGNHHYFLFGREDKGLP- 123

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175
           E+   +N    +  P+N     SLN+S  V ++V+E +      
Sbjct: 124 EDFMRANPEKALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 167


>gi|111023195|ref|YP_706167.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110822725|gb|ABG98009.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 151

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 23/166 (13%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
             +P++  N G   R +      +L LV P     SE     +      + SV V  NL+
Sbjct: 2   FHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHENLE 60

Query: 79  EAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            A A L    +YA TA               A V    I       ++FG E  GL+ E 
Sbjct: 61  AAWAALEPARVYAFTA--------------HATVSYADIAYQPGDVLLFGPEPTGLSEEV 106

Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +  ++  ++     P+ P   SLN+S A  L+ +E       S   
Sbjct: 107 L--ADPHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQHGFSGAA 150


>gi|258625649|ref|ZP_05720528.1| rRNA methyltransferase [Vibrio mimicus VM603]
 gi|258581887|gb|EEW06757.1| rRNA methyltransferase [Vibrio mimicus VM603]
          Length = 158

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 13/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               +  L        R R  F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFVEYLQ-------RERGTFRLFACTTKTTQHHVDAKFKQGD--VLMFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            IA   +   I  P+ P   SLN+S AV ++ +E    
Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|308188629|ref|YP_003932760.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
 gi|308059139|gb|ADO11311.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
          Length = 157

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFAWDDKRLRRAG-----LDYHEFT-- 55

Query: 77  LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              AI   AD     A       + + + A        +  +       ++FG E  GL 
Sbjct: 56  ---AIKFHADYQAFIAA-----ESPERLFALTTKGTPAHSAVAYQAGDYLLFGPESRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E +A   +   I  P+     S+N+S AV ++V+E    
Sbjct: 108 AEILAALPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQ 147


>gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
           AL212]
 gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
           AL212]
          Length = 246

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 23/173 (13%)

Query: 7   QLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
            + +    P   ++L   Q   N+G   R    F +    ++ P+D     +      S+
Sbjct: 87  DILDGLTEPARLLVLDGIQDPHNLGACLRVADAFGVH--AVIAPKDRAVGLTPTVYKVSS 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    LK+      +I+ T               E A           
Sbjct: 145 GAADTVPYISVTNLARTLKQLKEQGIWIFGTA--------------EDAAHDLTHFPISG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +V  +FG E  GL        + ++  P+     SLN++ +  + ++E     
Sbjct: 191 SVAWVFGSEEKGLRRLTRENCDQLVRIPMQGDIESLNVAVSAGICLFETHRQQ 243


>gi|282901434|ref|ZP_06309359.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193713|gb|EFA68685.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 153

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 28/166 (16%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P ++L++PQ+  N G +AR       T+L LV P     +++    +         V++ 
Sbjct: 2   PQVVLINPQIPPNTGNIARTCAATA-TELHLVGPLGFEITDRYLKRA--GLDYWPHVKLN 58

Query: 74  -FSNLKEAIADLH-----FIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              +    +  +H      +   + R   +  +    P +                ++FG
Sbjct: 59  YHESYHTFLK-VHQQRGGRLLGFSVRGNIDYIQYEFRPDDW---------------LLFG 102

Query: 127 RERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
            E  G+    + + ++ +  P++ P   SLN+S +V + ++E    
Sbjct: 103 SETTGIPENILDICDSTLYIPMDQPGVRSLNLSVSVAVALFESRRQ 148


>gi|257899601|ref|ZP_05679254.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
 gi|257837513|gb|EEV62587.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
          Length = 168

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           S+L+  +A L           +    +++     +   E    G+    +FG+E  GL  
Sbjct: 62  SDLEALLAFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 112 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 151


>gi|254225421|ref|ZP_04919032.1| rRNA methylase, SpoU family [Vibrio cholerae V51]
 gi|125622055|gb|EAZ50378.1| rRNA methylase, SpoU family [Vibrio cholerae V51]
          Length = 158

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 13/165 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +       D  RV  +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            K+ +A + ++     R R +F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 61  -KDYVAFIEYL----QRERGSFRLFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            IA   +   I  P+ P   SLN+S AV ++ +E          +
Sbjct: 114 LIASLPAEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158


>gi|166031366|ref|ZP_02234195.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC
           27755]
 gi|166028771|gb|EDR47528.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC
           27755]
          Length = 170

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 14/156 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R     N T+L L+ P      EK    +        S+ V + 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLDEKNLKRA--GMDYWGSLDVTTY 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +    AD           RN    +      A  +   +    +  I+FG+E  G+  E 
Sbjct: 61  ID--YADFL--------ERNPGAKIYMATTKAPKVYTEVSYEPDCYIMFGKESAGIPEEI 110

Query: 137 IALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +       +  P+     SLN+S +V ++++E +  
Sbjct: 111 LVQHQEDCVRIPMVGDIRSLNLSNSVSIVLYEALRQ 146


>gi|123440483|ref|YP_001004477.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332159708|ref|YP_004296285.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122087444|emb|CAL10225.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318603808|emb|CBY25306.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325663938|gb|ADZ40582.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330858932|emb|CBX69294.1| uncharacterized tRNA/rRNA methyltransferase yibK [Yersinia
           enterocolitica W22703]
          Length = 167

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 5/157 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        +++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +  +   +   A +A    N   + A        +  +    N  ++FG E  GL +  
Sbjct: 63  YQAFLDSENLDGAQSA--GTNPARLFALTTKGTPAHSAVNYQVNDYLLFGPETRGLPSNV 120

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 121 LDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQ 157


>gi|332994658|gb|AEF04713.1| putative tRNA/rRNA methyltransferase [Alteromonas sp. SN2]
          Length = 154

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N     L L+ P      +K    +         V+  ++
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANSGFM-LHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRHAS 62

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L   I       I+A T + +            A   + +   G    ++FG E  GL +
Sbjct: 63  LDAYIESEKPSRIFACTTKGK------------AFHSDAQYKKGD--ALLFGPETRGLPD 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + I        +  P+ P   S+N+S AV + V+E          +
Sbjct: 109 DVIDALPPEQRVRIPMLPDSRSMNLSNAVSVFVYESWRQLGYDGAR 154


>gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 288

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +     + +  ++ PVI++ +      N+G + R         + +   R    +     
Sbjct: 121 LADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTVMK 180

Query: 60  SSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            +A A   +   RV  NL  A+ +L     ++Y T A+   +  ++              
Sbjct: 181 VAAGALEYLPVARVV-NLNRALEELKAAGFWLYGTAAKTGKSLHTINL------------ 227

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                +G++ G E  GL+       + ++S P+    PSLN S A  + ++E       +
Sbjct: 228 --TGAIGLVVGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQRWQN 285

Query: 176 SE 177
           S 
Sbjct: 286 SP 287


>gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
           B-14911]
 gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
           B-14911]
          Length = 159

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N G +AR     + T L L+ P      +K    +         V +  +
Sbjct: 7   VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWQHVTILYY 63

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L E     A   F Y T    +   K   +         E     ++   IFG+E  G
Sbjct: 64  DSLDEFYEKNAGGEFFYLT----KFGQKPYTS--------FEYSDKEKDYYFIFGKETTG 111

Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E  E    +  +  P+     SLN+S    ++++E +   
Sbjct: 112 LPAEVKENNK-DRALRIPMTGNVRSLNLSNTAAILIYEALRQQ 153


>gi|327399542|ref|YP_004340411.1| tRNA/rRNA methyltransferase SpoU [Hippea maritima DSM 10411]
 gi|327182171|gb|AEA34352.1| tRNA/rRNA methyltransferase (SpoU) [Hippea maritima DSM 10411]
          Length = 162

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  P +  N G +AR     N + L L+ P     ++K    +       +++++   
Sbjct: 17  IVLFQPDIPPNTGNIARLCVATN-STLHLIKPLGFSLNDKRLKRA--GLDYWENLKLEMH 73

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L + +       F  A+T   +  F+                   +   +IFG E  G
Sbjct: 74  DSLSDFLNKYGNRKFFLASTKAVKPYFEVYFE---------------EGDFLIFGSETQG 118

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L N+ I    +  I+ P+     SLN++ +V ++++E +  
Sbjct: 119 LPNDFIEANLDKAINIPMTDKVRSLNLADSVAVVLYEAIRQ 159


>gi|255536170|ref|YP_003096541.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342366|gb|ACU08479.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
          Length = 257

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 22/166 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VII+   +   N+G V R+   F +  L + +P+  + +     SS      +  + +F 
Sbjct: 108 VIIIESVEKPGNLGAVLRSCEAFGIDALIITDPKVDFYNPNVIRSSVGC---LFGMDIFQ 164

Query: 76  NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +   A+ D     HF   TT  + +           A  +  + F G    ++FG E  G
Sbjct: 165 SENNALLDFLESNHFKIFTTRMSDD-----------ATDIFNQDF-GGRSALVFGTEHSG 212

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L++  I   +N ++  P+     SLN+S AV +  +E +   +  S
Sbjct: 213 LSDFWIGKGTNTLV--PMTGSIDSLNLSNAVAVSGYEILRQKLQKS 256


>gi|152993289|ref|YP_001359010.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425150|dbj|BAF72653.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 164

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+LV+PQ+ +N G + R   N   T L L+ P      +KA   +           + V+
Sbjct: 4   IVLVEPQIPQNTGTIGRLCVNLGAT-LHLIKPLGFDIDDKAVKRA--GLDYWKHLDLVVW 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + +  + +            +    +   K   +  N     G    I+FG E  G+ +
Sbjct: 61  ESFEAFLKEH---------PIDEHSYMSTTKTDNLYFNAPFKKGDY--ILFGSETKGI-D 108

Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E++ L++    I+ P+     SLN+  +V +++++ +  +    EK
Sbjct: 109 EKVLLAHPEQCITIPMGGKGRSLNLGVSVGVVIYDALRQNYEGFEK 154


>gi|254496266|ref|ZP_05109159.1| RNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254354523|gb|EET13165.1| RNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 148

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 24/160 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I L  P++  N G + R   N    QL L++P      +K    +       +   V  +
Sbjct: 4   IALYQPEIPPNTGNIIRLCANSG-AQLHLIHPLGFALDDKRMRRA--GLDYHEWAMVQHY 60

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  + I           TT   ++    V  P++                ++FG E  G
Sbjct: 61  DDWDDFIIKNPKRRIFCCTTKTQQSYCDVVYQPEDI---------------LLFGPETRG 105

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L   EI   +  I  P+     SLN+S AV ++++E    
Sbjct: 106 LP-AEIRNQHESIRIPMVENSRSLNLSNAVAIILFEAWRQ 144


>gi|167568630|ref|ZP_02361504.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           oklahomensis C6786]
          Length = 156

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61

Query: 76  NLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +       EA    H    TT  +         P +                 +FG E  
Sbjct: 62  DWDAFIAAEAPDPAHMFAFTTRGSGRFHDRAFEPGDW---------------FVFGAETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLAPELVERFPPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|254516074|ref|ZP_05128134.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           NOR5-3]
 gi|219675796|gb|EED32162.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           NOR5-3]
          Length = 154

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L +P++  N G + R   N     L L+ P      +K    +        +V V  +
Sbjct: 4   VALYEPEIPPNTGNIMRLCANTGCA-LHLIKPLGFALDDKQLRRAGLDYREFANVSVHDS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--- 133
           L   +A L                +            +     N  ++FG E  GL    
Sbjct: 63  LDAMVAALD------------KPRIWTLSTRGTRSYTQEQFQTNDVLLFGPETRGLPVSL 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +E+ + +  +  P+ P   SLN+S A  L+++E +  
Sbjct: 111 IDELGV-HRCLRVPMRPDSRSLNLSNATALVLYEGLRQ 147


>gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
 gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
          Length = 252

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             NIG   R         L +   +    +  A   ++ A   +    V +    L+E  
Sbjct: 114 PHNIGACLRTCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLARTLEELK 173

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               ++Y T               EA+  + +    G  + ++ G E  GL      + +
Sbjct: 174 QRGIWVYGTAG-------------EASSEIYQNRLQG-PIALVMGAEGKGLRRLTREVCD 219

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +I  P+     SLN+S A  + ++E +   
Sbjct: 220 ELIHIPMAGDVSSLNVSVAAGVCLFEVVRQR 250


>gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
 gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
          Length = 248

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 11/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q+  +  VIIL       N+G V+R+        + + N R          SSA A   +
Sbjct: 95  QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +V +           +  T +R +     +    E A  L  +      + ++ G E
Sbjct: 155 PVAQVSN-----------LVQTMSRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + G++   +   + ++  P+     SLN++QA    ++E +  
Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQ 246


>gi|238023026|ref|ZP_04603452.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
 gi|237865409|gb|EEP66549.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
          Length = 154

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 21/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
            ++L +P++  N G + R   N    +LRL+ P  G+P + A+   A  D    S  +  
Sbjct: 3   TVVLFEPEIPPNTGNIIRLCANTGC-ELRLIKPL-GFPLDSAKMKRAGLDYHEFSTLIVH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            NL E +  L    I+A T + +N   SV              F   +V  +FG E  GL
Sbjct: 61  ENLAECLDTLQGKRIFALTTKGKNRPDSV-------------AFQAGDV-FLFGPETRGL 106

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +     N  I FP+ P   S+N+S  V + V+E    
Sbjct: 107 PATVLDTLPENQKIRFPMMPNNRSMNLSNTVAITVFEAWRQ 147


>gi|167835307|ref|ZP_02462190.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis MSMB43]
          Length = 156

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +A    D   ++A T R    F              +R F   +   +FG E  G
Sbjct: 62  DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGPETRG 107

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +  +    +   +  P+ P   SLN+S  V ++V+E    +
Sbjct: 108 LASALVERFPAGQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150


>gi|225450191|ref|XP_002263230.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 218

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 20/185 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++LV PQ+  N G +AR      +  L L+ P      +     +           V+V 
Sbjct: 39  VVLVSPQIPGNTGTIARTCAASAVG-LHLIEPLGFQVDDAKLKRA--GLDYWPYVVVKVH 95

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  E             R +   K +LA  +    ++      +   +IFG E  GL  
Sbjct: 96  DSWAEFREYF--------RQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPP 147

Query: 135 EEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E +            I  P+   +   LN+S +V + ++E          +   +  T +
Sbjct: 148 EALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDS 207

Query: 188 TKGEL 192
           +K  L
Sbjct: 208 SKSFL 212


>gi|297736221|emb|CBI24859.3| unnamed protein product [Vitis vinifera]
          Length = 250

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 20/185 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++LV PQ+  N G +AR      +  L L+ P      +     +           V+V 
Sbjct: 71  VVLVSPQIPGNTGTIARTCAASAVG-LHLIEPLGFQVDDAKLKRA--GLDYWPYVVVKVH 127

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  E             R +   K +LA  +    ++      +   +IFG E  GL  
Sbjct: 128 DSWAEFREYF--------RQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPP 179

Query: 135 EEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           E +            I  P+   +   LN+S +V + ++E          +   +  T +
Sbjct: 180 EALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDS 239

Query: 188 TKGEL 192
           +K  L
Sbjct: 240 SKSFL 244


>gi|74318425|ref|YP_316165.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259]
 gi|74057920|gb|AAZ98360.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259]
          Length = 154

 Score = 75.1 bits (184), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N    +L LV P     S+K    +      + SV V ++
Sbjct: 4   IVLYQPEIPPNTGNLIRLAANTG-ARLHLVEPLGFDLSDKQLVRAGLDYHDMASVHVHAD 62

Query: 77  ---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++EA+A   +   TT  +R+                  +       ++FG E  GL 
Sbjct: 63  WTAVQEALAGRRWFALTTRGSRSY---------------ASVAFEAGDVLLFGPESRGLP 107

Query: 134 NEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +A  +    +  P+ P   SLN+S AV ++V+E    
Sbjct: 108 ADLLAHFDVDQRLRLPMLPGSRSLNLSNAVSVVVFEAWRQ 147


>gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           succinifaciens DSM 2489]
 gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           succinifaciens DSM 2489]
          Length = 258

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 26/171 (15%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANADCVID 69
              VI+L       N+G + R+   F  + L +V      D   +E    +SA A   +D
Sbjct: 106 NAVVIVLDSVTDPHNVGAILRSCDQFGAS-LMVVPDHRSADINNNEIIARASAGASSWVD 164

Query: 70  SVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +V  NL  A+     A   +IY   A      K +  PK                 II
Sbjct: 165 VAKV-PNLVRAVQILKSAGF-WIYGADAGGTTLSK-IKFPK--------------KTCII 207

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G E  G+        + I+S P      SLN+S A  ++++E     + +
Sbjct: 208 MGSEGSGIARLLQEQCDEIVSIPTCGKIDSLNVSVAAGVLLYEAYRQKLEN 258


>gi|293571560|ref|ZP_06682582.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E980]
 gi|291608366|gb|EFF37666.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E980]
          Length = 170

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       +  ++   
Sbjct: 7   IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           S+L+  +A L           +    +++     +   E    G+    +FG+E  GL  
Sbjct: 64  SDLEAFLAFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 113

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 114 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 153


>gi|116627199|ref|YP_819818.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
           LMD-9]
 gi|116100476|gb|ABJ65622.1| Predicted rRNA methylase (SpoU class) [Streptococcus thermophilus
           LMD-9]
          Length = 169

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G +AR     N + L ++ P      +K    +       D + +  +
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATN-SPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDITYY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL + ++          +N      ++          E    G++   +FGRE  GL  
Sbjct: 63  DNLADFMS----------KNHAGRLHLVTKFADKTYSEEVYADGEDHYFMFGREDTGLP- 111

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    I  P+N     SLN+S  V ++V+E +   
Sbjct: 112 EDFMREHPEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 152


>gi|296160421|ref|ZP_06843238.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           Ch1-1]
 gi|295889402|gb|EFG69203.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           Ch1-1]
          Length = 156

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P  G+P + AR   A      +  +  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDARMRRAG-LDYHEYAQMNVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++    IA    D   ++A T R    F              ER F   +   +FG E  
Sbjct: 61  ADWPAFIAKESPDPARMFAFTTRGSGRFH-------------ERAFQSGDW-FVFGAETR 106

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL +  +    S   +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPDLVLDQFASEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150


>gi|323144225|ref|ZP_08078857.1| putative RNA methyltransferase, TrmH family, group 2
           [Succinatimonas hippei YIT 12066]
 gi|322416000|gb|EFY06702.1| putative RNA methyltransferase, TrmH family, group 2
           [Succinatimonas hippei YIT 12066]
          Length = 156

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  PQ+ +N G + R   N    +L  V P D +  +K    +      I ++ V ++
Sbjct: 4   IVLYRPQMPQNAGNIIRLSANCG-AKLHFVGPLDFFMDDKKMLRAGLDYHEIANLTVHTS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ + +++   + A+T            P + +    +         ++FGRE  GL +
Sbjct: 63  FEKFMENMNPKRLIAST------IHGTATPSDFSFEDED--------FLLFGRETSGLPD 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E + +      +  P+      LN+S AV +M +E    
Sbjct: 109 EVMQIIPEKFRLRIPMVEKSRCLNLSNAVAVMAYEAWRQ 147


>gi|291619429|ref|YP_003522171.1| YibK [Pantoea ananatis LMG 20103]
 gi|291154459|gb|ADD79043.1| YibK [Pantoea ananatis LMG 20103]
 gi|327395751|dbj|BAK13173.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis AJ13355]
          Length = 157

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRLRRAG-----LDYHEFT-- 55

Query: 77  LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              AI   AD     AT        + + A        +  +       ++FG E  GL 
Sbjct: 56  ---AIKFHADYQAFIAT-----EQPERLFALTTKGTPAHSAVNYQSGDYLLFGPESRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 108 AEILQALPAAQKIRIPMMAESRSMNLSNAVSVVVYEAWRQ 147


>gi|237739114|ref|ZP_04569595.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423714|gb|EEO38761.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 150

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G + R+     LT   L L+ P      EK    S      +  ++++
Sbjct: 3   IVLFQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRSGLDYWHLVDLKIW 59

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +   EA  ++   YATT   +                   +   +N  I+FG E  G
Sbjct: 60  ESFEDFLEANRNIRLFYATTKTKQKYS---------------DVKYEENDFIMFGPESRG 104

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 105 IPEEILNKNPERC---ITIPMIPMGRSLNLSNSAVVILYEAYRQ 145


>gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
           2243]
 gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
           2243]
          Length = 248

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 11/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q+  +  VIIL       N+G V+R+        + + N R          SSA A   +
Sbjct: 95  QHDGRALVIILDHITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHV 154

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +V +           +  T +R +     +    E A  L  +      + ++ G E
Sbjct: 155 PVAQVSN-----------LVQTMSRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + G++   +   + ++  P+     SLN++QA    ++E +  
Sbjct: 204 QEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACMYEWLRQ 246


>gi|25011677|ref|NP_736072.1| hypothetical protein gbs1637 [Streptococcus agalactiae NEM316]
 gi|77407097|ref|ZP_00784097.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae H36B]
 gi|77414904|ref|ZP_00791009.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 515]
 gi|24413217|emb|CAD47296.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159049|gb|EAO70255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 515]
 gi|77174292|gb|EAO77161.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae H36B]
 gi|319745537|gb|EFV97839.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 182

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+  N G +AR     N   L ++ P      +K    +       D + V  +
Sbjct: 20  IVLFEPQIPANTGNIARTCAATNAP-LHIIRPMGFPIDDKKMKRA--GLDYWDKLDVSFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E +                   +++     +  +E     Q+   +FGRE  GL  
Sbjct: 77  DSLEEFMLSCRGKV-----------HLISKFADKVYSDENYNDDQDHYFMFGREDKGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +   +   +  P+N     SLN+S  V ++V+E +   
Sbjct: 126 TFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 165


>gi|300705287|ref|YP_003746890.1| tRNA/rRNA methyltransferase (spou) [Ralstonia solanacearum
           CFBP2957]
 gi|299072951|emb|CBJ44307.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           CFBP2957]
          Length = 175

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 23  VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 80

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
           N    L++A  D   ++A T R    F  +   P +                 +FG E  
Sbjct: 81  NWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 125

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+ E  E    +  I  P+ P   SLN+S  V ++V+E    
Sbjct: 126 GLSEERREWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168


>gi|311032447|ref|ZP_07710537.1| putative rRNA methylase [Bacillus sp. m3-13]
          Length = 163

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 15/162 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
           G  ++L  P++  N G +AR     N T L L+ P      +K    +       +  +V
Sbjct: 2   GLHVVLYQPEIPANTGNIARTCAATN-TTLHLIRPLGFSTDDKMLKRA--GLDYWEFVNV 58

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +L E                  F  +           +     ++   +FGRE  G
Sbjct: 59  VYYDSLDELFE---------KNKEAEFFYITKFGMKPHTSFDYSKLDKDYFFVFGRETTG 109

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  + I    +  +  P+     SLN+S    ++++E +   
Sbjct: 110 LPKDLIQSNLDQCLRLPMTKNVRSLNLSNTAAILIYEALRQQ 151


>gi|17545077|ref|NP_518479.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17427367|emb|CAD13886.1| putative trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 156

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F  +   P +                 +FG E  
Sbjct: 62  SWDAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+ E  A    +  I  P+ P   SLN+S  V ++V+E    
Sbjct: 107 GLSEERRAGFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|298370452|ref|ZP_06981768.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281912|gb|EFI23401.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 154

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            I+L  P++  N G + R   N     L LV P            +       +  +  V
Sbjct: 3   TIVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPLGFPLDSSKMKRA--GLDYHEFAKLTV 59

Query: 74  FSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             N ++ +   +   I+A T + +                 +     +    +FG E  G
Sbjct: 60  HENFEDCLKALEGRRIFALTTKGKTRP--------------DEASFKKGDVFLFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +    +   +  P+ P   S+N+S    +M++E    
Sbjct: 106 LPAEILDSLPAERKLRLPMRPGSRSMNLSNTAAVMLFEAWRQ 147


>gi|316983221|pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna
           Methyltransferase From Streptococcus Mutans Ua159
 gi|316983222|pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna
           Methyltransferase From Streptococcus Mutans Ua159
          Length = 182

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  PQ+  N G +AR     N T L ++ P      +K    +       D + V  +
Sbjct: 20  VVLFQPQIPANTGNIARTCAATN-TSLHIIRPMGFPIDDKKMKRA--GLDYWDKLDVHFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +                   ++         +E     ++   +FGRE  GL  
Sbjct: 77  DSLNDFMNICS-----------GKLHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E +   S   +  PVN     SLN+S  V ++V+E +   
Sbjct: 126 EFMRQHSEKALRIPVNDQHVRSLNLSNTVCMIVYEALRQQ 165


>gi|222054953|ref|YP_002537315.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32]
 gi|221564242|gb|ACM20214.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32]
          Length = 158

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+LV+P++  N G +AR       T L LV        +K    +         V +   
Sbjct: 9   IVLVEPEIPPNTGNIARLCGATG-TILHLVGKLGFSTDDKTLKRA--GLDYWSEVEIHYW 65

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                LK A  +  FIY        + K      E      +         I+FG+E  G
Sbjct: 66  PDLDTLKAAYPNGRFIY-------TSKKVAKTYVELEFRCGD--------FIVFGKETKG 110

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E++  +N    +  P+     SLN+S +  ++++E +  +
Sbjct: 111 LP-EDLIEANPATSVRIPIFGKVRSLNLSTSAGIVLYEALRQT 152


>gi|126172465|ref|YP_001048614.1| RNA methyltransferase [Shewanella baltica OS155]
 gi|125995670|gb|ABN59745.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS155]
          Length = 154

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N   +QL L+ P      EK    +      + +V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+A    +  TT  +R +                 +   ++  ++FG E  GL 
Sbjct: 63  FDAFLEAMAGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
 gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
          Length = 186

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 69/177 (38%), Gaps = 12/177 (6%)

Query: 6   PQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            + + S K P+I++   V      N+G V R+   F +  + L       P+ +   ++ 
Sbjct: 15  EEFKQSRKMPLIVVLDDVRSLH--NVGSVFRSSDAFRVEAIYLCGITATPPNAEIHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A+  +D  + F   +EAI  L     ++Y  +         +    +    +     S 
Sbjct: 73  GAEDSVDW-QYFPTTEEAIEQLKANGYYVY--SVEQVEGSTKLQTLSQQVAPITSEQTSE 129

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +   ++ G E  G+    + LS+  +  P      SLN+S    +++WE     ++ 
Sbjct: 130 KRYAVVLGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIWEFAHALLLE 186


>gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
           29799]
 gi|150269998|gb|EDM97517.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
           29799]
          Length = 252

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 16/171 (9%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P          G  ++L   Q   N+G + R    F    L LVN      S K   ++
Sbjct: 96  NPGLTPPDKLTGGRYLVLDGVQDPGNLGTIWRTADAFGADGLLLVNGCADPWSPKTIRAT 155

Query: 62  ANADCVIDSVRV-FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   + +       ++  +      +YAT  R                    R    +
Sbjct: 156 MGACFRLPAWETDLETVRALLDGADIPLYATALREDTVDV--------------RDVDLK 201

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              ++ G E  G+++E +AL    I  P+     SLN + A  +++WE   
Sbjct: 202 RAAVVIGSEGRGISDEALALCRRTIKIPMRARCESLNAAMAAGVVLWEMCR 252


>gi|300692668|ref|YP_003753663.1| tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07]
 gi|299079728|emb|CBJ52404.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           PSI07]
          Length = 175

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 23  VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 80

Query: 76  N----LKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    L++A  D   ++A T R    F  +   P +                 +FG E  
Sbjct: 81  SWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 125

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+ E  A    +  I  P+ P   SLN+S  V ++V+E    
Sbjct: 126 GLSEERRAWFPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168


>gi|115372778|ref|ZP_01460084.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823440|ref|YP_003955798.1| s-adenosyl-l-methionine dependent tRNA/rRNA family protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370259|gb|EAU69188.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396512|gb|ADO73971.1| S-adenosyl-L-methionine dependent tRNA/rRNA family protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 167

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 18/167 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+  A+   ++LV PQ+  N G VAR       ++L L+ P     +++    +      
Sbjct: 2   LEPLARPLHLVLVSPQIPPNTGNVARLCAVTG-SRLILIEPLGFSIADRDLKRA--GLDY 58

Query: 68  IDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            D V  +++      + D        AR     + + + +    +   R  +G +  ++F
Sbjct: 59  WDKVFLKLYPTYPAYLEDFP-----AAR-----RWLFSARAPTSLYAARFEAGDH--LVF 106

Query: 126 GRERWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  GL  E +A  S   ++ P+     SLN+S +V +  +E +  
Sbjct: 107 GSEVTGLPAEVMAGGSGQSVTIPMLEERRSLNLSTSVGIATYEALRQ 153


>gi|297581530|ref|ZP_06943453.1| rRNA methylase [Vibrio cholerae RC385]
 gi|297534368|gb|EFH73206.1| rRNA methylase [Vibrio cholerae RC385]
          Length = 158

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 13/165 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               I  L        R R +F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFIEYLQ-------RERGSFRLFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113

Query: 136 EIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            IA       I  P+ P   SLN+S AV ++ +E          +
Sbjct: 114 LIASLPVEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGAR 158


>gi|313471794|sp|A0KAS4|TRML_BURCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 156

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N     L L+ P  G+P + AR   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +A    D   ++A T R    F       + A +  +          +FG E  G
Sbjct: 62  DWDAFVAAETPDPARMFAFTTRGSGRFH------DHAFLSGDW--------FVFGSETRG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 108 LPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150


>gi|312868266|ref|ZP_07728466.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parasanguinis F0405]
 gi|311096011|gb|EFQ54255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parasanguinis F0405]
          Length = 180

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 19/177 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M       Q SA    I+L  PQ+ +N G +AR     N + L ++ P      ++    
Sbjct: 1   MNIEELDYQESAAQNHIVLFQPQIPQNTGNIARTCAATN-SPLHIIRPMAFPIDDRKMKR 59

Query: 61  SANADCVIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +       D   VR + +L+E +       A +    +    +++        +     G
Sbjct: 60  A--GLDYWDKLDVRFYDSLEEFME------AAS----DGQVHLVSKFANQTYSDVSYQDG 107

Query: 119 QNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           ++   +FGRE  GL  E+    +    I  P+N     SLN+S  V ++V+E +   
Sbjct: 108 KSHYFLFGREDKGLP-EDFMRQHEEKAIRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|171915687|ref|ZP_02931157.1| putative RNA methylase [Verrucomicrobium spinosum DSM 4136]
          Length = 158

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L  P++  N G V R        +L L+ P      +K    +         V  RV+
Sbjct: 4   IVLYQPEIPHNTGAVGRLCLATG-ARLHLIKPLGFSIDDKQLKRA--GLDYWKDVDVRVW 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              ++  A+        A         L  K      N    +     ++FG E  GL  
Sbjct: 61  DRFEDLQAE--------AAPSGAPFYYLTTKTTQTYWNATFPA--ECYLVFGPETRGLPE 110

Query: 135 EEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             +A    + +  P+     SLN++ AV ++++E +  +        
Sbjct: 111 SLLAEQPASCLRIPMLDT-RSLNLATAVGIVLYEAVRQTGSVPNPQA 156


>gi|221133703|ref|ZP_03560008.1| RNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 154

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N     L L+ P      +K    +        +V+  +N
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANSGFA-LHLIEPLGFEWDDKKVRRAGLDYHEFANVQRHAN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L   +A        +A+ +  F      K +          G    +IFG E  GL ++ 
Sbjct: 63  LDAYLA--------SAKPQRIF--ACTTKGSMFHSKASYAPGD--CLIFGPETRGLPHDF 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        +  P+     S+N+S +V + ++E    
Sbjct: 111 ILSLPPEQRVRIPMLSDSRSMNLSNSVAVFIYEAWRQ 147


>gi|295094554|emb|CBK83645.1| Predicted rRNA methylase (SpoU class) [Coprococcus sp. ART55/1]
          Length = 165

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 24/171 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R        +L L+ P     +EK    +       D   V  +
Sbjct: 4   IVLHEPEIPANTGNIGRTCVAAG-ARLHLIEPLGFQINEKQLKRA--GLDYWDKLDVTTY 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N ++ +A         ATT + R  +  V    +                I+FG+E  G
Sbjct: 61  VNFEDFLAKNPGAKIYMATT-KARKKYTDVKFEDD--------------AYIMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           +  E +    +  I  P+ P   SLN+  +V ++++E +  +     +   
Sbjct: 106 IPEEILVDYKDTSIRIPMFPDIRSLNLGNSVAIVLYEALRQNDFPGLEEAG 156


>gi|160877349|ref|YP_001556665.1| RNA methyltransferase [Shewanella baltica OS195]
 gi|160862871|gb|ABX51405.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS195]
 gi|315269553|gb|ADT96406.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS678]
          Length = 154

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N   +QL L+ P      EK    +      + +V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+A    +  TT  +R        P        + +       ++FG E  GL 
Sbjct: 63  FDAFLEAMAGKRIMACTTKGSR--------PHTELTFAKDDV-------LLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|168701120|ref|ZP_02733397.1| putative rRNA methylase [Gemmata obscuriglobus UQM 2246]
          Length = 172

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 20/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSVR 72
           + L +P++  N G +AR     N T+L L+        ++A   +     +A  V+  V 
Sbjct: 4   VALWEPEIPPNTGNIARLCAATN-TRLHLIGKLGFRLDDRALKRAGLDYWHAVDVVRHVT 62

Query: 73  VFSNLKEAIAD---LHFIYATTARNRNNFKS------VLAPKEAAIVLNERIFSGQNVGI 123
            F++ + A+           TT               V  P E      E         +
Sbjct: 63  -FADFERALTGEVKRDSPSGTTTDADRIEHPLPRVWCVETPAERPYTRAEFADGD---CL 118

Query: 124 IFGRERWGLTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           +FG E  GL        ++ ++  P+      SLN++ AV +++++ +  
Sbjct: 119 LFGSESSGLPPSVRERYADRLVGIPMPGGAVRSLNLATAVGIVLYDALRR 168


>gi|295397737|ref|ZP_06807808.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974023|gb|EFG49779.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 171

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++  N G +AR     + T L L+ P      +K    +       ++V +   
Sbjct: 5   IVLFEPEIPANTGNIARTCAATD-THLHLIEPLGFKTDDKHLKRA--GLDYWNAVDITYH 61

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +NL    E + D      T          V +  +            Q++ ++FG+E  G
Sbjct: 62  ANLDAFMEYLGDNQLYLVT-----KFANHVYSDIDYGNN-----DQDQDIFLMFGKETTG 111

Query: 132 LTNEEIALSN--AIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
           L  E    ++    I  P++     SLN+S    L+++E     
Sbjct: 112 LP-EAFMRAHEDQCIRIPMDDTHVRSLNLSNCAALVIYEVQRQQ 154


>gi|307154692|ref|YP_003890076.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           7822]
 gi|306984920|gb|ADN16801.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           7822]
          Length = 155

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ++LV PQ+  N G +AR       T+L LV P     S++    +      + S+   
Sbjct: 2   VRVVLVHPQIPPNTGNIARTCAATA-TELHLVGPLGFQISDRYLKRAGLDYWPLVSLYYH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL++ +  +H  +      R    SV   +       +         ++FG E  GL  
Sbjct: 61  PNLEDFLT-IHQKFG----GRLIGFSVSGHQSYLEYSFKSDDW-----LLFGSETQGLPA 110

Query: 135 EEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171
             +   +A +  P + P   SLN+S +V + ++E    
Sbjct: 111 NLLTSCDATVYIPMMEPKVRSLNLSVSVAVGLFEAKRQ 148


>gi|161523632|ref|YP_001578644.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189351599|ref|YP_001947227.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221211142|ref|ZP_03584121.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD1]
 gi|160341061|gb|ABX14147.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans ATCC 17616]
 gi|189335621|dbj|BAG44691.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221168503|gb|EEE00971.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD1]
          Length = 156

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   I+A T R  + F      P +                 +FG E  
Sbjct: 62  DWDAFVAAESPDPARIFAFTTRGSSRFHDRAFLPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +    +   +  P+ P   S+N+S  V ++V+E    +
Sbjct: 107 GLPAELLERFPAEQRVRLPMRPGNRSMNLSNTVAVVVFEAWRQA 150


>gi|255974985|ref|ZP_05425571.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|257090801|ref|ZP_05585162.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|307285493|ref|ZP_07565632.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0860]
 gi|312902433|ref|ZP_07761639.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0635]
 gi|255967857|gb|EET98479.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256999613|gb|EEU86133.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|306502717|gb|EFM71982.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0860]
 gi|310634103|gb|EFQ17386.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0635]
 gi|315170405|gb|EFU14422.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1342]
 gi|315579156|gb|EFU91347.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0630]
          Length = 168

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +PQ+  N G +AR     N   L L+ P      +K    +       +  ++   
Sbjct: 5   IVLFEPQIPANTGNIARTCAATNAP-LHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
            +L   +A +                ++               G++   +FG+E  GL  
Sbjct: 62  KDLAAFLAHVA----------GKHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       I  P+N     SLN+S    L+V+E +   
Sbjct: 112 TFMRENEE-----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQ 151


>gi|226305480|ref|YP_002765440.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226184597|dbj|BAH32701.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 154

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++  +P++  N G   R +      +L LV P     SE     +      + +V V  
Sbjct: 3   RVMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVHE 61

Query: 76  NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL  A   +    ++A TA               A      I       ++FG E  GL+
Sbjct: 62  NLAAAWEAVTPARVFAFTA--------------HATTSYADIAYQPGDVLLFGPEPTGLS 107

Query: 134 NEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171
            E +  ++  I+     P+ P   SLN+S A  L+ +E    
Sbjct: 108 EEVL--ADEHITERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 147


>gi|291166114|gb|EFE28160.1| RNA methyltransferase, TrmH family, group 2 [Filifactor alocis ATCC
           35896]
          Length = 156

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L++P++  N G + R       ++L L+ P      EK    +      +D V +   
Sbjct: 5   IVLIEPEIPSNTGNIIRTCACTG-SRLHLIRPLGFSMEEKKLRRA--GLDYLDLVEICYY 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F  L+E   +  F   +T  NRN+   V    E                ++FG+E  G
Sbjct: 62  DSFEELEEKYPNAEFFMYSTKSNRNHT-DVRYEDEC--------------FLVFGKETKG 106

Query: 132 LTNEEIAL-SNAIISFPV-NPL-FPSLNISQAVLLMVWECMEN 171
           +++  +   ++ ++  P+ N      LN+S +V + ++E +  
Sbjct: 107 ISDSILDRYADCMVRIPMLNEERMRCLNLSNSVAIGIYEVIRQ 149


>gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 378

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 19/177 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q      +++L   Q   N+G +AR++  F +  + +   R    +      +A A   +
Sbjct: 194 QAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTSTVMKVAAGALSTL 253

Query: 69  DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              RV  NL  A+  L     ++Y TT+R  +   S    +               + ++
Sbjct: 254 PVARVV-NLNRALEYLKEQGFWVYGTTSRGADPIYSADFQR--------------PIALV 298

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            G E  G++       + ++S P+     SLN S A  + ++E          K  +
Sbjct: 299 VGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHHLKRPE 355


>gi|30690444|ref|NP_198040.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|38603878|gb|AAR24684.1| At5g26880 [Arabidopsis thaliana]
 gi|110740973|dbj|BAE98581.1| hypothetical protein [Arabidopsis thaliana]
 gi|110743259|dbj|BAE99520.1| hypothetical protein [Arabidopsis thaliana]
 gi|332006236|gb|AED93619.1| protein agamous-like 26 [Arabidopsis thaliana]
          Length = 263

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           ++LV PQ+  N G +AR      +  L LV P  G+  + AR   A  D     V+ +  
Sbjct: 84  VVLVSPQIPGNTGCIARTCAASAVG-LHLVGPL-GFQVDDARVKRAGLDYWPFVVVKAHS 141

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            ++  +E             R +   K ++A  +    ++          ++FG E  GL
Sbjct: 142 SWAEFQEYF-----------RLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGL 190

Query: 133 TNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMEN 171
             E ++  N        +  P+   +   LN+S +V + ++E    
Sbjct: 191 PPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQ 236


>gi|323489458|ref|ZP_08094687.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis
           MPA1U2]
 gi|323396952|gb|EGA89769.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis
           MPA1U2]
          Length = 157

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  P +  N G +AR+     + +L L+ P      +K    +       + V +  +
Sbjct: 5   IVLYQPLIPANTGNIARSCAGTGV-KLHLIRPLGFSTDDKMLKRA--GLDYWEHVDIHYY 61

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             L+E      +  F Y T    + +     + +E            ++   +FG+E  G
Sbjct: 62  DGLQELFDRYKNGAFYYITKFGAKTHTSYDYSDRE------------KDHFFVFGQETKG 109

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E I  + +  +  P+N    SLN+S    ++++E +   
Sbjct: 110 LPKELIEQNPDFCLRIPMNDNIRSLNLSNTASILMYEALRQQ 151


>gi|306830150|ref|ZP_07463334.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304427676|gb|EFM30772.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 167

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 67/161 (41%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIHFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL + ++ +                +++     +     + SG++   +FGRE  GL  
Sbjct: 62  DNLADFLSQM-----------KGQVYLISKFAEKVYSEANLASGEDQYFLFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|220936435|ref|YP_002515334.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997745|gb|ACL74347.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 157

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P++  N G + R   N    +L L++P      E     +       D  +V   
Sbjct: 4   VVLYQPEIAPNTGNIMRLCANTGC-RLHLIHPLGFSLDESKLKRA--GLDYRDMAQV--- 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                A+   + A T+         L  + +          G     +FG E  GL  E 
Sbjct: 58  -----AEYDSLAAFTSAVAPERMFALTTRASLPHSAPAFRPGDT--FLFGPETRGLPMEI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     +  +  P+ P   SLN+S A  +MV+E    
Sbjct: 111 LDGLPEDRRLRIPMVPGSRSLNLSNAAAVMVYEAWRQ 147


>gi|116872332|ref|YP_849113.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741210|emb|CAK20332.1| RNA methyltransferase, TrmH family, group 2 [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 169

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E     A   F Y T        + V +         +     ++   +FG+E  
Sbjct: 61  YDSLDEFFEKNAGGEFYYIT-----KFGRHVYS-------DIDYSDPNKDYFFVFGKETT 108

Query: 131 GLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL +E +  +    +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLPDELLQENEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151


>gi|110803755|ref|YP_698630.1| rRNA methylase-like protein cspR [Clostridium perfringens SM101]
 gi|110684256|gb|ABG87626.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens SM101]
          Length = 153

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 23/160 (14%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++ +N G +AR     N   ++L ++ P      +K    +         +   
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTN---SKLHIIKPMGFVIDDKHLKRA--GLDYWSQLDLE 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  + ++ +             +   K +      A    + +   +   I+FGRE  G+
Sbjct: 60  IHESYEDFMK------------KYGDKKIYLSTTHAEDHYDEVKYEEEAFIMFGRESAGV 107

Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
             E++  ++  I  P+ N    SLN+S  V ++ +E +  
Sbjct: 108 P-EDVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQ 146


>gi|313904349|ref|ZP_07837727.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313470899|gb|EFR66223.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 163

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 24/175 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +P++  N G + R       + L L+ P     +EK    +       D   V  +
Sbjct: 6   IVLHEPEIPANTGNIGRTCVAAGAS-LHLIEPLGFRLNEKMIRRA--GMDYWDQLDVTRY 62

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + ++ ++        YA+T  +RN                          I+FG+E  G
Sbjct: 63  VDYEDFMSQHPGAKIYYASTKASRNYTDVSFEDDCY---------------IMFGKESAG 107

Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           +  E +  ++A  I  P++P   SLN+  +V ++++E +     +  +     + 
Sbjct: 108 IPEEILRENDATAIRIPMSPDIRSLNLGNSVAIVLYEALRQHGFAGLQTEGSLSP 162


>gi|116074887|ref|ZP_01472148.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. RS9916]
 gi|116068109|gb|EAU73862.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. RS9916]
          Length = 158

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 24/163 (14%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV- 71
               I L +P++  N G +AR+   F L  L L+ P      ++A   +         V 
Sbjct: 6   SPLRIALFEPRIPPNTGNIARSCAAFQLP-LSLIEPLGFSIDDRAVKRA--GLDYWPHVD 62

Query: 72  -RVFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                + +  +A+L   H +   +             +     L+   F   +V ++FGR
Sbjct: 63  LATHPDFEHFLAELPVPHRLIGCS-------------RHQGQSLSTFQFQPGDV-LLFGR 108

Query: 128 ERWGLTNEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWEC 168
           E  GL N      +AI + P+  +    SLN+S +  L+ ++ 
Sbjct: 109 EDTGLPNPVRERCDAICTIPMRGHENVRSLNLSVSCALVSFQA 151


>gi|153002625|ref|YP_001368306.1| RNA methyltransferase [Shewanella baltica OS185]
 gi|151367243|gb|ABS10243.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS185]
          Length = 154

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N   +QL L+ P      EK    +      + +V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+A    +  TT  +R        P        + +       ++FG E  GL 
Sbjct: 63  FDAFLEAMAGKRIMACTTKGSR--------PHTELTFAKDDV-------LLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 108 MSIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|146309796|ref|YP_001174870.1| putative tRNA/rRNA methyltransferase YibK [Enterobacter sp. 638]
 gi|145316672|gb|ABP58819.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter sp. 638]
          Length = 157

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D    +  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TN 134
               +    +     A    N + + A        +  +   +   ++FG E  GL  T 
Sbjct: 54  FTAVVRHHDYAAFVAA---ENPQRMFALTTKGTPAHSAVSYQEGDYLMFGPETRGLPATI 110

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++  +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDVLPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|313888215|ref|ZP_07821889.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845905|gb|EFR33292.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 154

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+  +P++  N G +AR      L  T+L L+ P      +     +      +  +  +
Sbjct: 4   IVFYEPEIPFNTGAIARTC---GLTKTRLHLIRPLGFSVDDSHLKRAGLDYWHLVDINYY 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  E +    D +F  A+T   +                   +       I+FG E  G
Sbjct: 61  DSYDELVEKYPDSNFYLASTKAKKKYT---------------DVEYKDGDFIVFGPETRG 105

Query: 132 LTNEEIALSNA--IISFPVNPLFP-SLNISQAVLLMVWECMEN 171
           L  E++  +N    I  P+   F  SLN+S +  ++++E +  
Sbjct: 106 LP-EDLIFANYDNAIRIPMLKDFGRSLNLSNSANIILFEALRQ 147


>gi|91781671|ref|YP_556877.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
 gi|91685625|gb|ABE28825.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
          Length = 156

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P  G+P + AR   A      +  +  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDARMRRAG-LDYHEYAQMNVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++    IA    D   ++A T R    F              ER F   +   +FG E  
Sbjct: 61  ADWAAFIAKESPDPARMFAFTTRGSGRFH-------------ERAFQSGDW-FVFGAETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL +  +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPDPVLGQFADEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQT 150


>gi|226365700|ref|YP_002783483.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226244190|dbj|BAH54538.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 155

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++  +P++  N G   R +      +L LV P     SE     +      + SV V  
Sbjct: 3   RVMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHE 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL+ A A +    ++A TA               A V    I       ++FG E  GL+
Sbjct: 62  NLEAAWAAVGPARVFAFTA--------------HATVSYADIAYRPGDVLLFGPEPTGLS 107

Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            E +A  +    +  P+ P   SLN+S A  L+ +E       S   
Sbjct: 108 AEVLADPHVTERVRIPMLPGRRSLNLSNAAALVTYEAWRQHGFSGAA 154


>gi|164687676|ref|ZP_02211704.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM
           16795]
 gi|164603450|gb|EDQ96915.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM
           16795]
          Length = 156

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 28/167 (16%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++LV+P++ +N G + R   N     L L+ P      +K            D   +
Sbjct: 2   SINVVLVEPEIPQNTGNIIRTCANTG-AILHLIRPLGFSLEDKYLKR--CGLDYWDISEI 58

Query: 74  -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                F  L+E   D  + Y+TT  N+ +              ++  F      ++FG+E
Sbjct: 59  RYYDSFEELQEKYPDAKYFYSTTKANKAH--------------SDMEFEDG-CFLVFGKE 103

Query: 129 RWGLTNEEIALSNA--IISFPV--NPLFPSLNISQAVLLMVWECMEN 171
             GL  + +  +N    +  P+       SLN+S +V ++V+E M  
Sbjct: 104 TKGLP-KPLIEANMETCMRIPMLKLEKARSLNLSNSVAIVVYEAMRQ 149


>gi|313200342|ref|YP_004039000.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312439658|gb|ADQ83764.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp.
           MP688]
          Length = 164

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N   T+L LV P      +K    +        +++V  N
Sbjct: 14  IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 72

Query: 77  LKE---AIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +    A+A       TT    R++                 I   +    +FG E  GL
Sbjct: 73  WEACCTALAGRRMFALTTKGSTRHST----------------IAFQEGDVFVFGPETRGL 116

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E       +  +  P+ P   SLN+S +  ++++E    
Sbjct: 117 PEEIRDQFAPDHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQ 157


>gi|110799392|ref|YP_695961.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|168207654|ref|ZP_02633659.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens E str. JGS1987]
 gi|168211765|ref|ZP_02637390.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215129|ref|ZP_02640754.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens CPE str. F4969]
 gi|168218192|ref|ZP_02643817.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens NCTC 8239]
 gi|169343200|ref|ZP_02864215.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens C str. JGS1495]
 gi|110674039|gb|ABG83026.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens ATCC 13124]
 gi|169298658|gb|EDS80737.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens C str. JGS1495]
 gi|170661014|gb|EDT13697.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens E str. JGS1987]
 gi|170710281|gb|EDT22463.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713470|gb|EDT25652.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens CPE str. F4969]
 gi|182379790|gb|EDT77269.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens NCTC 8239]
          Length = 153

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 23/160 (14%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++ +N G +AR     N   ++L ++ P      +K    +         +   
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTN---SKLHIIKPMGFVIDDKHLKRA--GLDYWSQLDLE 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  + ++ +             +   K +      A    + +   +   I+FGRE  G+
Sbjct: 60  IHESYEDFMK------------KYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGV 107

Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
             E++  ++  I  P+ N    SLN+S  V ++ +E +  
Sbjct: 108 P-EDVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQ 146


>gi|323435932|ref|ZP_01049071.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|321496247|gb|EAQ40305.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 164

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           T + P   N  K  +I+        N+G + R    F + ++          S + R ++
Sbjct: 6   THHTPASHN--KEIIIVCDHVSGPANVGSIFRLADAFGVQEIIFCGNAPDVTSSRLRKTA 63

Query: 62  ANADCVI---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFS 117
            N +  +   +S  + + L      ++       R +      L     ++ + E  I +
Sbjct: 64  RNTERTVRFRESENISTTL------INL------REQGFSTIALEIDSTSLPIAEVHIAN 111

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              + ++ G E  G+T E +     I   P++ +  S+N++QA  + ++E   
Sbjct: 112 MSKISLVIGAESTGVTPEALEQCAVIAHIPMHGINSSMNVAQAAGIALYELTR 164


>gi|302817646|ref|XP_002990498.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii]
 gi|300141666|gb|EFJ08375.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii]
          Length = 264

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 10/152 (6%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NI  V R    F L  + ++   D    ++AR+ S  A+  +D V V+ N  E      
Sbjct: 83  GNICAVFRTAEAFGLQSVHVIANSDQKRYKEARNISMGAEKWLD-VEVWENTNE----CV 137

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
            +     R R    +V       + ++E +       +IFG E  G + E +AL++    
Sbjct: 138 QVL----RKRGYRIAVTDMGADTVPIHE-LDWTIPTAVIFGNEHNGTSEEALALADVKCH 192

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            P+  +  S N+S A  ++++  + + +  + 
Sbjct: 193 IPMVGMVDSFNVSVAAGILMYHVVGDRLERTG 224


>gi|150003712|ref|YP_001298456.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254881058|ref|ZP_05253768.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|319640065|ref|ZP_07994792.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|149932136|gb|ABR38834.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254833851|gb|EET14160.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|317388343|gb|EFV69195.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 178

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L + +   NIG V R    F +  + L       P  +   ++  A+  ++  R 
Sbjct: 24  PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAEYSVEW-RY 82

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130
             N  +A+ +LH          +   +VLA ++     L +++   + +   I+ G E  
Sbjct: 83  KKNTLDAVQELH----------DQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G+  E +   +  +  P      SLN+S    +++WE
Sbjct: 133 GVQQEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWE 169


>gi|294777466|ref|ZP_06742917.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294448534|gb|EFG17083.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 178

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L + +   NIG V R    F +  + L       P  +   ++  A+  ++  R 
Sbjct: 24  PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEW-RY 82

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130
             N  +A+ +LH          +   +VLA ++     L +++   + +   I+ G E  
Sbjct: 83  KKNTLDAVQELH----------DQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G+  E +   +  +  P      SLN+S    +++WE
Sbjct: 133 GVQQEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWE 169


>gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
           43184]
 gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
           43184]
          Length = 249

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 34/185 (18%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKA 57
           P +    K P I+L      V      N G +AR      +    +V P  G    +  A
Sbjct: 87  PFVYEQGKNPFIVLLDGVTDVR-----NFGAIARTCECAGVD--AIVIPSRGSVTVNADA 139

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNE 113
             +SA A  V+   +   ++ EAI  L      +YA +              E A     
Sbjct: 140 IKTSAGALHVLSVCK-EKSITEAIRFLQASGVKVYAAS--------------EKAFENYT 184

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            I     V I+ G E  G++ + + + ++++  P      SLN+S A  ++++E +   +
Sbjct: 185 AIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILIYEVVRQRM 244

Query: 174 VSSEK 178
               +
Sbjct: 245 NEQAQ 249


>gi|183220250|ref|YP_001838246.1| SpoU family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910368|ref|YP_001961923.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775044|gb|ABZ93345.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778672|gb|ABZ96970.1| Putative tRNA/rRNA methyltransferase, TrmH (SpoU) family
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 155

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 15/158 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P++  N G +AR   N  +  L +V       SEKA   +         + +   
Sbjct: 3   IALFRPEIPPNTGNIARLCVNAGVP-LSIVGEPAFDLSEKAVRRA--GLDYWKDLELHR- 58

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                 D  +            K +    +    +   +        +FGRE  GL  EE
Sbjct: 59  ----YPDWDW---FQKEKETQGKRIFLVSKFGKKVYWDVSFSSKDVFLFGRETSGLP-EE 110

Query: 137 IAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I     S+ IIS P+     S+N+S AV ++++E +  
Sbjct: 111 IHKGHPSDQIISIPMAESSRSINLSNAVAIILYEALRQ 148


>gi|329118733|ref|ZP_08247433.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465168|gb|EGF11453.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 154

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            ++L  P++  N G + R   N     L LV P  G+P + A+   A      +  R  V
Sbjct: 3   TVVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSAKMKRAG-LDYHEFARVSV 59

Query: 74  FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +  E +A L    I+A T + R        P + +    +          +FG E  G
Sbjct: 60  HESYAECLAALAGRRIFALTTKGRTR------PDQVSFQAGD--------VFLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +        I  P+     S+N+S  V ++V+E    
Sbjct: 106 LPAEILDGLPQERKIRLPMKSGSRSMNLSNTVAVIVFEAWRQ 147


>gi|296136564|ref|YP_003643806.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
 gi|294340692|emb|CAZ89084.1| putative tRNA/rRNA methyltransferase (SpoU) [Thiomonas sp. 3As]
 gi|295796686|gb|ADG31476.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
          Length = 262

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M    P+      G  +IL   Q   N+G + R         + L+    G  S K   S
Sbjct: 98  MLIARPKSSKPRPGSALILDRVQDAGNVGTMLRTAAASGCGAVYLLRGCAGVWSPKVLRS 157

Query: 61  SANADCVIDSVRVFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +  A  VI    VF +   ++ +                 + + A    A  +   +   
Sbjct: 158 AMGAHFVIP---VFEDPPWEQVLN-------------IVPRPIYATHMQADTVLYELDLK 201

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + V  IFG E  G+++  +A  +A++  P      SLN++ +  + ++E +  S  S 
Sbjct: 202 EPVTWIFGNEGQGISDALVAKCSALVRIPQADGVESLNVAASAAICLYEGVRQSQFSK 259


>gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 262

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 11/154 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L +      + K   +SA A      V +F       +
Sbjct: 120 QDPGNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVLRASAGAWF---QVPIFVT-----S 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL  +     +++N+  +++A    A     ++   Q   I+ G E  GL+N  IAL++ 
Sbjct: 172 DLTTVI---KKHKNHGVNIVATLPNATETYWQLQFTQPTLILLGNEGSGLSNSLIALADE 228

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++S P++    SLN++ A  L+++E     I +S
Sbjct: 229 LVSIPLSQGVESLNVAIATALLLYEAKRQKIFNS 262


>gi|217971422|ref|YP_002356173.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
 gi|304412327|ref|ZP_07393935.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS183]
 gi|307306111|ref|ZP_07585856.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           BA175]
 gi|217496557|gb|ACK44750.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS223]
 gi|304349362|gb|EFM13772.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS183]
 gi|306910984|gb|EFN41411.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           BA175]
          Length = 154

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N    QL L+ P      EK    +      + +V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+A    +  TT  +R +                 +   ++  ++FG E  GL 
Sbjct: 63  FDAFLEAMAGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|310658411|ref|YP_003936132.1| rRNA methylase [Clostridium sticklandii DSM 519]
 gi|308825189|emb|CBH21227.1| putative rRNA methylase [Clostridium sticklandii]
          Length = 151

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 30/163 (18%)

Query: 19  LVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           LV+P++ +N G + R     N    +L L+ P      EK    +      +D V +  +
Sbjct: 2   LVEPEIPQNTGNIIRTCACIN---ARLHLIKPMGFSMDEKQLKRA--GLDYMDLVSINYY 56

Query: 75  SNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E I D     F + TT   +N+               E  +  ++  I+FG+E  G
Sbjct: 57  DSFEELIEDKDINKFYFFTTKAKKNHT--------------EATYEDESY-IVFGKETKG 101

Query: 132 LTNEEIALS-NAIISFPVN--PLFPSLNISQAVLLMVWECMEN 171
           L+ E ++L+ N  +  P+       SLN+S +V +  +E +  
Sbjct: 102 LSQEILSLNPNNNVRIPMLNMDRVRSLNLSNSVAIAAYEAIRQ 144


>gi|167628241|ref|YP_001678740.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
           modesticaldum Ice1]
 gi|167590981|gb|ABZ82729.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
           modesticaldum Ice1]
          Length = 153

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 14/156 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G VAR        +L L+ P      +K    +      +  V V  N
Sbjct: 4   IVLVEPEIPPNTGNVARLCAGTGC-ELHLIKPLGFSIDDKQLKRAGLDYWHLVKVHVHDN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +             ++   ++L                     +FG+E  GL+ E 
Sbjct: 63  WAAFLE------------KHGQANLLLLSTKGKKAYHEFAYRPGDFFVFGKETKGLSEEI 110

Query: 137 I-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +      +   P+     SLN+S AV ++V+E +  
Sbjct: 111 LSEWPERVARIPLVADARSLNLSNAVAVVVFEGLRQ 146


>gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
           DSM 18315]
          Length = 249

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 34/185 (18%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKA 57
           P +    K P I+L      V      N G +AR      +    +V P  G    +  A
Sbjct: 87  PFVYEQGKNPFIVLLDGVTDVR-----NFGAIARTCECAGVD--AIVIPSRGSVTVNADA 139

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNE 113
             +SA A  V+   +   ++ EAI  L      +YA +              E A     
Sbjct: 140 IKTSAGALHVLPVCK-EKSITEAIRFLQASGVKVYAAS--------------EKAFENYT 184

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            I     V I+ G E  G++ + + + ++++  P      SLN+S A  ++V+E +   +
Sbjct: 185 AIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILVYEVVRQRM 244

Query: 174 VSSEK 178
               +
Sbjct: 245 NEQAQ 249


>gi|194398514|ref|YP_002037156.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
 gi|194358181|gb|ACF56629.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
          Length = 167

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132
            +L++ I+                  +    + A  +     + + ++   +FGRE  GL
Sbjct: 62  ESLEDFIS-------------QMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGL 108

Query: 133 TNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             + +    +  +  P+N     SLN+S  V ++V+E +   
Sbjct: 109 PEDFMREHPDKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|323343642|ref|ZP_08083869.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
 gi|323095461|gb|EFZ38035.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
          Length = 176

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P V++L D +   N+G V R+   F +  + L       PS +   ++   
Sbjct: 15  EEFKEAPKLPLVVVLDDVRSLHNVGSVFRSCDAFRVEAVYLCGITATPPSAEIHKTALGG 74

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123
           +  ++  + FS  ++AI  L        R    F   +   E ++ L   R+   +   +
Sbjct: 75  ENSVEW-KYFSQTEKAIRQL--------RLEGYFCYAVEQAEGSVKLQTLRLNRAKKYAV 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +FG E  G+    I   ++ +  P      SLN+S    ++VWE  +  ++
Sbjct: 126 VFGNEVKGVKQTVIDCCDSCLEIPQLGTKHSLNVSVTAGVVVWEFAKQLLL 176


>gi|150015482|ref|YP_001307736.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
 gi|149901947|gb|ABR32780.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
          Length = 162

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +P++ +N G +AR       ++L L+ P     +EK    +           + + 
Sbjct: 14  IVLYEPEIPQNTGNIARTCVLTG-SKLHLIKPLGFEINEKQVRRA--GLDYWKDLDLEIH 70

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + +E +             +   K++           + I   +   I+FGRE  G+  
Sbjct: 71  DSYEEFLK------------KYGEKTIYLSTTHGETHFDEISFKEGDFIMFGRESSGVP- 117

Query: 135 EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           EE+   +     P+      SLN+S  V ++ +E +  
Sbjct: 118 EEVHNRHIGFRVPMIKSSTRSLNLSNTVAIVAYEALRQ 155


>gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355]
          Length = 167

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 18/170 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 62  DSLEDFMEQMD------GRLYLISK-----FAEKVYSEENFAAESSHYFMFGREDKGLPE 110

Query: 135 EEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           E +       +  P+N     SLN+S AV ++V+E +     +    V E
Sbjct: 111 EFMRRYPEKALRIPMNDQHVRSLNVSNAVCMIVYEALRQQNFAGLDLVHE 160


>gi|294672913|ref|YP_003573529.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294472688|gb|ADE82077.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 247

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 12/167 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +LQ      +++L   +   N+G + R+     +  L + +P     +     +S    
Sbjct: 90  EKLQLKESPLIVVLESVEKPGNLGAILRSAEAAGIDALIVCDPLTDMYNPNVIRASIGGV 149

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             + +  V S+ +E IA L          + +   +L  +             Q   I+ 
Sbjct: 150 FCVPTA-VCSS-QECIAFL----------KEHGIKILTAQLQDSYEYYDYDMTQGTAIVM 197

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GLTN+    ++A I  P+     SLN+S +  ++++E +   
Sbjct: 198 GTESTGLTNQWREAADAHIRIPMLGRLDSLNVSVSAAILMYEAVRQR 244


>gi|167561403|ref|ZP_02354319.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           oklahomensis EO147]
          Length = 156

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    IA    D   ++A T R    F              +R F   +   +FG E  G
Sbjct: 62  DWDAFIAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 108 LAPELVERFPPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|89056101|ref|YP_511552.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
 gi|88865650|gb|ABD56527.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
          Length = 166

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 30/169 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P++  N G + R     +L +L L++P     SEK+   +         VR    
Sbjct: 17  VVLVHPEIPGNTGTIGRTCVALDL-ELILIHPLGFDISEKSVRRA--GLDYWKHVR---- 69

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---------GIIFGR 127
               +++          +   F    AP+E  + L E    G +V          +IFG+
Sbjct: 70  ----LSEYD--------SWTAFLEARAPREDQVFLFENGGEGGSVYEPDYPSDAYLIFGK 117

Query: 128 ERWGLTNEEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIV 174
           E  GL +E +   ++     P+ +P   SLN+S A   ++++ M + +V
Sbjct: 118 ETKGLPSEVLNGRAHRTFHLPMRSPHIRSLNLSNAATAVIYQAMRSFLV 166


>gi|116690871|ref|YP_836494.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|116648960|gb|ABK09601.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           cenocepacia HI2424]
          Length = 172

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 24/179 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P  P  Q +     ++LV P++  N G V R   N     L L+ P  G+P + AR  
Sbjct: 5   VAPLRPP-QPNRNMFNVVLVAPEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMR 61

Query: 61  SANADCVI-DSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            A  D      +RV  +    +A    D   ++A T R    F       + A +  +  
Sbjct: 62  RAGLDYHEYAQMRVHRDWDAFVAAETPDPARMFAFTTRGSGRFH------DHAFLSGDW- 114

Query: 116 FSGQNVGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   +FG E  GL  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 115 -------FVFGSETRGLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 166


>gi|326503224|dbj|BAJ99237.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 252

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 20/180 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++LV P +  N G +AR      +  L LV P      +     +           V++ 
Sbjct: 73  VVLVSPMIPGNTGSIARTCAASAVG-LHLVGPLGFHVDDTKLKRA--GLDYWPYVVVKIH 129

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  E   D           ++  K +LA  +    ++          ++FG E  GL  
Sbjct: 130 DSWGE-FRDYFM-------KQDGQKRLLAFTKRGTHVHSDFSYKPGDWLVFGSETKGLPE 181

Query: 135 EEIALSN------AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
             +   +        I  P+   +   LN+S +V + ++E          +   +    A
Sbjct: 182 SALEDCSGEAVGGGTIRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQLQYQPDLPEEA 241


>gi|289434200|ref|YP_003464072.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170444|emb|CBH26984.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 169

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLTY 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + ++ E     H            F  +           +   + ++   IFG+E  GL 
Sbjct: 61  YDSMDEFFEKNH---------GGEFYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLP 111

Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +E+  +N    +  P+     SLN+S    ++ +E +   
Sbjct: 112 -DELLQANEEHCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151


>gi|53805210|ref|YP_113068.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53758971|gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str.
           Bath]
          Length = 282

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 17/154 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G +AR +  F L  L L + P     S+ A   +      +D VR  +   +A+  
Sbjct: 141 PHNLGAIARTLAFFGLGHLVLSDHPAQAGLSDAAYRVAEGGLEFLD-VRRLTGAAQALRS 199

Query: 84  LH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           L     +  T    R      + P++   +L           ++ G E  GL    +A  
Sbjct: 200 LRPHFHVVGTALHARGIPPEAV-PRDRRPIL-----------LVLGNEENGLPPPTLAAC 247

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             +++ P      SLN+S    ++ +  +     
Sbjct: 248 ETVVTIPGGGQIQSLNVSATAAILTYSLLLRQAE 281


>gi|296328651|ref|ZP_06871168.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154250|gb|EFG95051.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 150

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 34/166 (20%)

Query: 17  IILVDPQLGENIGMVARAM----WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           I+L  P++  N G + R+       F      L+ P      EK    +      +  ++
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTTF-----HLIKPLGFSLDEKQVKRAGMDYWHLVDLK 57

Query: 73  VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ + +E +     +   YATT   +                   +   +N  I+FG E 
Sbjct: 58  IWESFEEFLEANKGIRLFYATTKTKQRYS---------------DVKYEENDYIMFGPES 102

Query: 130 WGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  + +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 103 RGIPEDILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145


>gi|77412361|ref|ZP_00788672.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae CJB111]
 gi|77161581|gb|EAO72581.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae CJB111]
          Length = 182

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+  N G +AR         L ++ P      +K    +       D + V  +
Sbjct: 20  IVLFEPQIPANTGNIARTCAAT-XAPLHIIRPMGFPIDDKKMKRA--GLDYWDKLDVSFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E +                   +++     +  +E     Q+   +FGRE  GL  
Sbjct: 77  DSLEEFMLSCRGKV-----------HLISKFADKVYSDENYNDDQDHYFMFGREDKGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +   +   +  P+N     SLN+S  V ++V+E +   
Sbjct: 126 TFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 165


>gi|107104223|ref|ZP_01368141.1| hypothetical protein PaerPA_01005296 [Pseudomonas aeruginosa PACS2]
 gi|218894226|ref|YP_002443095.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|254243993|ref|ZP_04937315.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192]
 gi|126197371|gb|EAZ61434.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192]
 gi|218774454|emb|CAW30271.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
          Length = 153

 Score = 74.3 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G + R   N   + L L+ P      +K    +        SVR + +
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+   EA+        TT  +R                   +   ++   +FG E  GL 
Sbjct: 63  LQSCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRDDAFLFGPESRGLP 107

Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E++  +   +  +  P+     SLN+S  V + V+E    
Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147


>gi|317050081|ref|YP_004117729.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316951698|gb|ADU71173.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. At-9b]
          Length = 157

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L++P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIHPLGFGWDDKRLRRAG-----LDYHEFT-- 55

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              AI       A  A         L  K        R  +G    ++FG E  GL  + 
Sbjct: 56  ---AIKHHDNYAAFVAAEAPQRLFALTTKGTPAHSAVRYQAGDY--LVFGPESRGLPADI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LNALPPEQKIRIPMMPESRSMNLSNAVSVVVYEAWRQ 147


>gi|311234374|gb|ADP87228.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
          Length = 158

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 22/170 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L  P++  N G VAR       T+L L+ P      ++    +         V   V+
Sbjct: 3   IVLYHPEIPPNTGNVARLCAAT-RTRLHLIEPLGFSLDDRYLKRA--GLDYWPHVPLTVW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ ++ ++   +   +  T+AR            +                ++FG E  G
Sbjct: 60  ASWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPDDM--------------LVFGPETTG 105

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           L  E + L+   +  P+     S+N+S A  +++++ +  +    +   +
Sbjct: 106 LPQEVLDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELDQHTPE 155


>gi|227552600|ref|ZP_03982649.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|227178226|gb|EEI59198.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
          Length = 187

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 24  IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 80

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           S+L+  +  L           +    +++     +   E    G+    +FG+E  GL  
Sbjct: 81  SDLEAFLTFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 130

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 131 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 170


>gi|206559142|ref|YP_002229902.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
 gi|198035179|emb|CAR51053.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
          Length = 156

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N     L L+ P  G+P + AR   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           N    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  NWDAFVASEAPDPARMFAFTTRGSGRFHDRAFLPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 150


>gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 328

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 20/167 (11%)

Query: 15  PVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           PVI++        N+G + R         L +   R    +      +A A   +   RV
Sbjct: 162 PVIVVCDGITDPHNLGAIIRTAEALGAQGLVIPQRRAVGVTSTVMKVAAGALETLPIARV 221

Query: 74  FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             NL  A+ +L     +IY T A               A  L   +    ++ ++ G E 
Sbjct: 222 V-NLSRALEELKTAGFWIYGTCA--------------DAGKLLHTVDLNGSIVLVIGSEG 266

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GL+       + ++S P+    PSLN S A  + ++E      V+ 
Sbjct: 267 SGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYETYRQRWVNP 313


>gi|33863022|ref|NP_894582.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634939|emb|CAE20925.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9313]
          Length = 166

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 30/176 (17%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
            N      + L +P++  N G +AR    F +  L L+ P      ++    +       
Sbjct: 4   PNKRSPLRVALYEPRIPPNTGNIARTCAAFRIP-LALIEPLGFSLDDRYLRRA--GLDYW 60

Query: 69  DSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             V +         ++ +   H +   +   R     + + +     +           +
Sbjct: 61  PHVDLSVHSDLDTFRKCLPLNHRLIGCS---RFGGIPLRSMRFQTGDV-----------L 106

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFP--------SLNISQAVLLMVWECMEN 171
           +FGRE  GL ++     + I + P+             SLN+S A  ++ +E    
Sbjct: 107 LFGREDTGLPSKVRQQCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGRQ 162


>gi|315652201|ref|ZP_07905196.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485507|gb|EFU75894.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 165

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L++P++ +N G + R+    N T+L L+ P     SEK    +       + +   V+
Sbjct: 3   IVLLEPEIPDNTGNIGRSCVATN-TRLHLIEPLGFKLSEKRIKRA--GMDYWEKLDLTVY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S+LK+             +N    + +      A    + +    +  I+FG+E  G+  
Sbjct: 60  SDLKDFYE----------KNPKAKEHMYFATTKAHHTYKDVLYDCDEYIMFGKESAGIPE 109

Query: 135 EEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           E +A +    I  P+     SLN+S +V ++++E +        +   E
Sbjct: 110 EILAENEENCIRIPMWGDIRSLNLSNSVAVILYEALSQHGFEKMQLTGE 158


>gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum
           H04402 065]
          Length = 155

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--- 71
           I+L  P++ +N G +AR     N   ++L L+ P      EK    +         +   
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWQYLDLS 59

Query: 72  --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               +  L+E   D +F ++TT  + NNF + +  ++                I+FGRE 
Sbjct: 60  IYESYEELREKYKDSNFYFSTT--HGNNFYTDVKYRD-------------GDFIVFGRES 104

Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            GL  +EI  S+    I  P+ N    SLN+S  V ++ +E +  
Sbjct: 105 SGLP-DEIRDSDPSKCIRIPMINTTTRSLNLSNTVAVVTYEALRQ 148


>gi|255536513|ref|YP_003096884.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
 gi|255342709|gb|ACU08822.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
          Length = 197

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q    G  ++L + +   N+G + R    F + ++ L       P  +   ++  A   +
Sbjct: 41  QTQKTGLTVVLDNVRSMHNVGAIFRTADAFLIEKVVLCGITPQPPHREIHKAALGATESV 100

Query: 69  DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           + +     +  A+  L      +     T+ ++                   I   Q   
Sbjct: 101 EWI-YVDTVSAALETLKKENYTVIGIEQTSNSQKIGDY-------------HISKDQKYA 146

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++ G E  GL+ + +AL +A +  P      SLN+S    +++WE  +
Sbjct: 147 VVLGNEVDGLSEDALALYDAFLEIPQLGTKHSLNVSVCGGIVMWEFFK 194


>gi|322420889|ref|YP_004200112.1| tRNA/rRNA methyltransferase SpoU [Geobacter sp. M18]
 gi|320127276|gb|ADW14836.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M18]
          Length = 161

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 24/171 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV+P++  N G +AR       T L LV  + G+ ++      A  D   +  +R + 
Sbjct: 9   IVLVEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRAGLDYWSEVDIRYWE 66

Query: 76  NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +L+    A  +   IY     ++   KS L            +       I+FG+E  GL
Sbjct: 67  DLEALKRAFPEGRLIY----TSKKAPKSYL-----------ELSFHPGDFIVFGKETKGL 111

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             EE+  ++    +  P+     SLN+S +  ++++E +  +   +    +
Sbjct: 112 P-EELIEAHPETSVRIPIIGRVRSLNLSTSAGIVLYEALRQTGALAGAQAE 161


>gi|330469164|ref|YP_004406907.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328812135|gb|AEB46307.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 274

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 6/160 (3%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +        ++   P    NIG + R+   F  + + +          KA  +S  +   
Sbjct: 110 IPTGPTMLTVVFDRPTSPGNIGTLVRSADAFGASGVIITGHAADVYDPKAVRASTGSLFA 169

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +  VRV +  ++A+      +    R      +V+   E   +        Q   I+ G 
Sbjct: 170 LPVVRVPA--RQAV----LSWGVDVRAGGIGMNVVGTDELGALDVADYDFRQPTLIVIGN 223

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E  GL++      + ++  P++    SLN + A  ++++E
Sbjct: 224 ETTGLSSGWREACDQVVRIPMSGAASSLNAATAATVVLYE 263


>gi|120602052|ref|YP_966452.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|120562281|gb|ABM28025.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
          Length = 188

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 24/185 (12%)

Query: 4   YAPQLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P  Q +A G +  I+L  P++  N G VAR       T+L L+ P      ++    +
Sbjct: 18  SVPSPQPAAAGAMMHIVLYHPEIPPNTGNVARLCAAT-RTRLHLIEPLGFSLDDRYLKRA 76

Query: 62  ANADCVIDSV--RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                    V   V+S+ ++ ++   +   +  T+AR            +          
Sbjct: 77  --GLDYWPHVPLTVWSSWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPDDM-------- 126

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 ++FG E  GL  E + L+   +  P+     S+N+S A  +++++ +  +    
Sbjct: 127 ------LVFGPETTGLPQEVLDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELD 180

Query: 177 EKNVK 181
           +   +
Sbjct: 181 QHTPE 185


>gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           beijerinckii NCIMB 8052]
          Length = 300

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           ++IL + +   N+G + R    F +  + L   R    S     SS  A   +   +V  
Sbjct: 153 IVILDEVEDPHNLGSIVRTAELFGVHGIILPKRRSASVSTTVYKSSVGAIEHVKIAKVTN 212

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             S ++E      +IY    R       V                G    +I G E  G+
Sbjct: 213 LNSTIEELKEKGIWIYGADIRAEEYSYQVDF--------------GGPCAVIIGNEGRGI 258

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +   +   + +I  P+     SLN S A  ++++E ++  +
Sbjct: 259 SKLTVEKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRL 299


>gi|283787764|ref|YP_003367629.1| RNA-methyltransferase [Citrobacter rodentium ICC168]
 gi|282951218|emb|CBG90911.1| putative RNA-methyltransferase [Citrobacter rodentium ICC168]
          Length = 159

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 15/163 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEFT-- 55

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A  +      L  K            G    ++FG E  GL    
Sbjct: 56  ---AVTRHHDYAAFLAAEKPQRIFALTTKGTPAHSVVSYQQGDY--LLFGPETRGLPASI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +    +   I  P+ P   S+N+S AV ++V+E    S     
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQSGYPGA 153


>gi|71906256|ref|YP_283843.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB]
 gi|71845877|gb|AAZ45373.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB]
          Length = 154

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L  P++  N G + R   N    +L LV P     S+K    +       +  R+  
Sbjct: 3   AVVLYRPEIPPNTGNIIRMCANTG-AELHLVEPLGFDLSDKHLRRA--GLDYHEYARIVR 59

Query: 76  NLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +        A+A       TT       K   +P   A+  N+          +FG E  
Sbjct: 60  HADWAACKAALAGRRLFAMTT-------KGTASPFSTALEAND--------VFVFGCETS 104

Query: 131 GLTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           GL  E  A  +    +  P+ P   SLN+S A  + V+E    +    
Sbjct: 105 GLPPEIRAEFSPERCLRLPMLPGQRSLNLSNAAAVTVFEAWRQTGFPG 152


>gi|315223322|ref|ZP_07865183.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           anginosus F0211]
 gi|315187754|gb|EFU21508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           anginosus F0211]
          Length = 170

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 8   IVLFEPQIPQNTGNIARTCAATN-SPLHIILPMGFPIDDRKMKRA--GLDYWDKLDITYY 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL+E ++ +                +++     +   E   +  N   +FGRE  GL  
Sbjct: 65  DNLEEFMSKMD-----------GQLYLISKFAEKVYAEENFATAGNHYFMFGREDKGLP- 112

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+   ++    +  P+N     SLN+S  V +MV+E +   
Sbjct: 113 EDFMRAHSEKALRIPMNDEHVRSLNLSNTVCMMVYEALRQQ 153


>gi|296391977|ref|ZP_06881452.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
 gi|313110168|ref|ZP_07796068.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
 gi|310882570|gb|EFQ41164.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
          Length = 153

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G + R   N   + L L+ P      +K    +        SVR + +
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+   EA+        TT  +R                   +   +    +FG E  GL 
Sbjct: 63  LQSCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107

Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E++  +   +  +  P+     SLN+S  V + V+E    
Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147


>gi|46580643|ref|YP_011451.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450062|gb|AAS96711.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 159

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 65/170 (38%), Gaps = 22/170 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L  P++  N G VAR       T+L L+ P      ++    +         V   V+
Sbjct: 4   IVLYHPEIPPNTGNVARLCAAT-RTRLHLIEPLGFSLDDRYLKRA--GLDYWPHVPLTVW 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++ ++ ++   +   +  T+AR            +                ++FG E  G
Sbjct: 61  ASWEDFLSRGVEGRRLVTTSARGGTAVHRFTYAPDDM--------------LVFGPETTG 106

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           L  E + L+   +  P+     S+N+S A  +++++ +  +    +   +
Sbjct: 107 LPQEVLDLTPHRVCIPIWGEVRSINLSTATGVVLYQALAATGELDQHTPE 156


>gi|331092004|ref|ZP_08340835.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402205|gb|EGG81776.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 165

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 26/173 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R     N T+L L+ P     +EKA   +       + + V   
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKALKRA--GMDYWEDLDVTTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E   +     ATT                A  +   +    +  I+FG+E  G
Sbjct: 61  INYEDFLEKNPNAKIYMATT---------------KAPNVYTDVSYEPDCYIMFGKESAG 105

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +  EEI + +    I  P++    SLN+  +V ++++E +  +  ++ +    
Sbjct: 106 IP-EEILVLHKEDSIRIPMSQDIRSLNLGNSVAIVLYEALRQNGFANMETAGH 157


>gi|163748763|ref|ZP_02156015.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica
           KT99]
 gi|161331537|gb|EDQ02342.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica
           KT99]
          Length = 154

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N    QL L+ P      +K    +       D   V   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEDKKLRRA--GLDYADLTCVTRY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +++   A+A    +  TT  +R +              +E  F   +V ++FG E  G
Sbjct: 61  KDYASFLVAMAGRRIMACTTKGSRPH--------------SELSFEKGDV-LLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E I     +  +  P+     SLN+S AV ++ +E    
Sbjct: 106 LPMEIIESLPTSQRLKIPMAGTSRSLNLSNAVAIISYEAWRQ 147


>gi|227499734|ref|ZP_03929834.1| tRNA methylase [Anaerococcus tetradius ATCC 35098]
 gi|227218201|gb|EEI83464.1| tRNA methylase [Anaerococcus tetradius ATCC 35098]
          Length = 152

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 68/161 (42%), Gaps = 21/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L+ P+   N+G + R       ++L L+ P     S++    +       + V   + 
Sbjct: 4   IVLISPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRA--GIDYWEKVDLVIH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E +  +             +  +  P +           G    +IFGRE+ G+ +
Sbjct: 61  DSLEEFMEFV---------KDKRYFLIETPSDKKYTDV-SFKDGDY--LIFGREKEGI-D 107

Query: 135 EEIALS--NAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E +  +  + I++ P+      SLN++ +V ++++E +  +
Sbjct: 108 ESLLKANKDKILTIPMTKKIDRSLNLANSVSIVLYEALRQA 148


>gi|29377148|ref|NP_816302.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|29344614|gb|AAO82372.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
          Length = 168

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+  N G +AR     N T L L+ P      +K    +       + V +  +
Sbjct: 5   IVLFEPQIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLT- 133
              A A L  +           K +    + A      +    G++   +FG+E  GL  
Sbjct: 62  KDSA-AFLAHVAG---------KHLHLVTKFAHQTYSEVNYNDGEDHYFLFGKETTGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       I  P+N     SLN+S    L+V+E +   
Sbjct: 112 TFMRENEE-----KCIRIPMNDEHVRSLNLSNTAALIVYEALRQQ 151


>gi|170766721|ref|ZP_02901174.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
           TW07627]
 gi|170124159|gb|EDS93090.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
           TW07627]
          Length = 157

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R   N    +L ++ P      +K    +       +   V   
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRA--GLDYHEFTTVTRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +S   EA         TT                    +  +    +  ++FG E  G
Sbjct: 61  HDYSAFLEAENPQRLFALTT---------------KGTPAHSAVSYQDSDYLMFGPETRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +    ++  I  P+ P   S+N+S AV ++V+E    
Sbjct: 106 LPATILDALPADQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|294789639|ref|ZP_06754873.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri
           ATCC 29453]
 gi|294482440|gb|EFG30133.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri
           ATCC 29453]
          Length = 154

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            IIL  P++  N G + R   N     L LV P  G+P + ++   A  D     ++ V 
Sbjct: 3   TIILYQPEIPPNTGNIIRLCANTGC-DLHLVKPL-GFPLDSSKMKRAGLDYHEFANIVVH 60

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N      A+A       TT       K    P +                 +FG E  G
Sbjct: 61  ENWDNCMVALAGRRIFALTTKGKTRPDKVAFLPHDV---------------FLFGAETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E +A    N  I FP+ P   S+N+S  V + V+E     
Sbjct: 106 LPAEILASLPDNQKIRFPMMPDNRSMNLSNTVAITVFEAWRQQ 148


>gi|153853541|ref|ZP_01994921.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
 gi|149753696|gb|EDM63627.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
          Length = 163

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R     N T+L L+ P     +EK    +       + + V   
Sbjct: 4   IVLHEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKNLKRA--GMDYWEHLDVRTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +++  E         ATT                A  +   +    +  I+FG+E  G
Sbjct: 61  IDYNDFLEKNPGAKIYMATT---------------KAPKVYTEVNYEPDCYIMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +       +  P+     SLN+  +V ++++E +  
Sbjct: 106 IPEEILVEHKEDCVRIPMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91]
          Length = 260

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 19/182 (10%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
               L +    P  +LV    +   N+G   R    F +  + +   R    S      +
Sbjct: 84  ALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHAVIVPKDRAVGLSATVHKVA 143

Query: 62  ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           + A   +    V +    L+E   +  +I  TTA               A    + I   
Sbjct: 144 SGAVDTVPFFAVTNLARTLRELKEEGIWIVGTTA--------------DASDTLDSITLT 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + +  + G E  G+        + ++S P++    SLN+S +  + ++E     +  ++ 
Sbjct: 190 RPIAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFETCRQHVQKAKT 249

Query: 179 NV 180
            +
Sbjct: 250 GL 251


>gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_19]
 gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_19]
          Length = 248

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 30/182 (16%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P +    K P I+L      V      N G +AR      +  + +        +  A  
Sbjct: 87  PFVYEQGKDPFIVLLDGVTDVR-----NFGAIARTCECAGVDTIVIPAKGSVSVNADAIK 141

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +SA A  V+   +   ++ +AI  L      ++A +              E A      +
Sbjct: 142 TSAGALHVLPVCK-EKSINQAIRFLQQSGVKVFAAS--------------EKAAENYTAV 186

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V I+ G E  G++ E + + + ++  P      SLN+S A  ++V+E +   +  
Sbjct: 187 KYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNE 246

Query: 176 SE 177
            +
Sbjct: 247 QQ 248


>gi|290956646|ref|YP_003487828.1| rRNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260646172|emb|CBG69265.1| putative rRNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 276

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 16/166 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVF 74
           +   P    NIG + R+   F  + L +          K+  +S     A  V+ S +  
Sbjct: 121 VFDRPTQPGNIGSIVRSADAFGASGLIVTGHAADPYDPKSVRASTGSFFAVPVVRS-QSH 179

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             + E +           + R   + V  +   E            Q V ++ G E  GL
Sbjct: 180 HEVMEWLE----------KERAQGRPVAVVGTDEDGDAEVSEFDLTQPVLLLIGNETAGL 229

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           ++    L + +IS P+     SLN S A  ++++E     +    K
Sbjct: 230 SSAWRELCDQVISIPMTGSASSLNASNAASVVLYEARRQRLAKQRK 275


>gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
           49814]
 gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
           49814]
          Length = 272

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 12/167 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA 64
             +  + +GP++IL      +N+G V R+   F   +  ++  R+      A + ++  A
Sbjct: 111 EDVLANGEGPIVILDQVTDPQNVGAVFRSCAAFG-AKAVIMQTRNSPNLGGALAKAAVGA 169

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +I  V V           +   A TA +   +  V       I + +   +   + I+
Sbjct: 170 IDIIPEVAVV----------NISRAVTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIV 219

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  G+        + +    ++P   SLN+S A  + ++E    
Sbjct: 220 MGAEGSGIRPLIAKGCSQLAKISISPQMESLNVSSAASIALYEANRQ 266


>gi|237784952|ref|YP_002905657.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237757864|gb|ACR17114.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 195

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 24/174 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            ++N      ++   P +  N G   R         L L  P      EK    +     
Sbjct: 31  TIRNPNPPLHVVFDQPVIPPNTGNAIRMCAGVG-AHLHLCEPLGFNLEEKNLRRAGLDYH 89

Query: 67  VIDSVRVFSNLKEAIA-------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +  V +  +L E +        D   +YA T  +  + +    P +   VL        
Sbjct: 90  DLVDVTIHPSLDECLTTLGAGAPDGPKVYAFT--SHTSVRVDTVPYQWGDVL-------- 139

Query: 120 NVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +FG E  GL+ E +A     + +  P+ P   S+N+S A  +  +E    
Sbjct: 140 ----LFGCEPTGLSAEALADPRITSHVRIPMLPGRRSMNLSNAAAVGAYEAWRQ 189


>gi|186475041|ref|YP_001856511.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184191500|gb|ACC69465.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phymatum
           STM815]
          Length = 156

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P      +     +       +  +  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPLGFPLDDSKMRRA--GLDYHEYAQMHVH 60

Query: 75  SNLKEAIA----DLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            N    I     +L  ++A TT  +R        P +                 +FG E 
Sbjct: 61  RNWDALIEMEAPNLARMFAFTTRGSRPFHSHAFLPGDW---------------FVFGAET 105

Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL +  +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 106 RGLPDAVVERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|167036092|ref|YP_001671323.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166862580|gb|ABZ00988.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           GB-1]
          Length = 153

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCH-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L   +  L    ++A T +  + F  V                      +FG E  GL
Sbjct: 61  ESLAGCLESLGNPRLFAFTTKGSHPFHEV--------------AYQPGDAFLFGPESRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +    +   +  P+ P   SLN+S  V + V+E    
Sbjct: 107 PAEVLDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|254412961|ref|ZP_05026733.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
 gi|196180125|gb|EDX75117.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
          Length = 153

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 28/165 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--V 73
            ++LV PQ+  N G VAR     + T+L LV P     S++    +         V+   
Sbjct: 3   RVVLVCPQIPPNTGNVARTCAATD-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKFHY 59

Query: 74  FSNLKEAIADLH------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              L EA   +       +I  +T+   +  +    P +                + FG 
Sbjct: 60  HETL-EAFNQVSQKLGGRWIGFSTSGQYSYVQFQFQPNDW---------------LFFGS 103

Query: 128 ERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171
           E  GL+   +    A +  P   P   SLN+S +  L ++E    
Sbjct: 104 ETQGLSPSVLTRCGATVVIPMTQPGVRSLNLSVSAALGLFEARRQ 148


>gi|314937991|ref|ZP_07845302.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a04]
 gi|314941583|ref|ZP_07848467.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133C]
 gi|314948431|ref|ZP_07851819.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0082]
 gi|314951380|ref|ZP_07854432.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133A]
 gi|314991309|ref|ZP_07856788.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133B]
 gi|314995352|ref|ZP_07860458.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a01]
 gi|313590445|gb|EFR69290.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a01]
 gi|313594082|gb|EFR72927.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133B]
 gi|313596438|gb|EFR75283.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133A]
 gi|313599603|gb|EFR78446.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133C]
 gi|313642666|gb|EFS07246.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a04]
 gi|313645156|gb|EFS09736.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0082]
          Length = 187

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       +  ++   
Sbjct: 24  IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 80

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           SNL+  +        T   NR     +++     +  +E    G+    +FG+E  GL  
Sbjct: 81  SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 130

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 131 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 170


>gi|84393040|ref|ZP_00991806.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01]
 gi|84376292|gb|EAP93174.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01]
          Length = 159

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 57/157 (36%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V+   N
Sbjct: 4   IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  +  L        R  +        K     ++ +   G    ++FG E  GL  E 
Sbjct: 63  LEAFLEYLE-----NEREGDYRIFACTTKTTGHHVDAKFQQGD--VLMFGPESRGLPAEF 115

Query: 137 IALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 116 IESMPMEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 152


>gi|289207239|ref|YP_003459305.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           K90mix]
 gi|288942870|gb|ADC70569.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           K90mix]
          Length = 154

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I+L +P++  N G + R   N     L L++P  G+  + AR+  A  D   +  V+ + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLAANTGAA-LHLIHPL-GFELDSARARRAGLDYHELARVQEYD 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKS----VLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +L+              R R + +      L  +  A        SG    ++FG E  G
Sbjct: 62  SLE--------------RWRESIRPQREFALTTRGQARYDQAGFQSGD--ALLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +        +  P+ P   SLN+S AV ++V+E    
Sbjct: 106 LPQAVLDALPPEQRLRLPMQPDSRSLNLSNAVAVVVYEAWRQ 147


>gi|323524635|ref|YP_004226788.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323381637|gb|ADX53728.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1001]
          Length = 156

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A      +  +  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKLRRAG-LDYHEYAQMNVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +N    IA    +   ++A T R    F       + A    +          +FG E  
Sbjct: 61  ANWAAFIAKESPEPSRMFAFTTRGSGRFH------DHAFAAGDW--------FVFGAETR 106

Query: 131 GLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL +  +    S   +  P+ P   SLN+S  V ++V+E    
Sbjct: 107 GLPDSVLEQFGSEERVRLPMRPGNRSLNLSNTVAIVVFEAWRQ 149


>gi|282880630|ref|ZP_06289336.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
 gi|281305525|gb|EFA97579.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
          Length = 176

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 9/168 (5%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P +++L D +   N+G V R+   F +  + L       P  +   ++ 
Sbjct: 13  SVEEFKEADKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  +   R F++  EA+ +L        RN     S+   + +  + +  +   Q   
Sbjct: 73  GGEDSVAW-RYFASATEAVEELK-------RNEYFVYSIEQVEGSTKLQHLTLNRHQRYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++FG E  G+    +   N  +  P      SLN+S    ++VWE   
Sbjct: 125 VVFGNEVKGVNQTTVDACNGCLEIPQFGTKHSLNVSVTAGIVVWEFAR 172


>gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
 gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
          Length = 158

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 23/172 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75
           +L  P++ +N G VAR         L L+ P     S      +         V  RV  
Sbjct: 5   VLFQPEIPQNAGNVARTAAALGFP-LHLIRPLGFRLSHPGLKRA--GLDYWPYVDLRVHD 61

Query: 76  N---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                  A+     + A +AR   N                R   G    ++FG E  GL
Sbjct: 62  TWEAFLAALPPGARVLAFSARGERNLY------------QARFQEGDY--LLFGPETRGL 107

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
             E +    ++   P+     SLN++ AV +  +E       +       + 
Sbjct: 108 PPEVLGRFPSL-YIPMPGPVRSLNLAVAVGVAAYEAYRQLREAGPGRTPGRG 158


>gi|262065869|ref|ZP_06025481.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380456|gb|EFE87974.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 150

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 34/166 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++  N G + R+     LT   L L+ P      EK    S        SV  +
Sbjct: 3   IVLFQPEIPYNTGNIGRSCV---LTNTTLHLIKPLGFSLDEKQVKRS--GLDYWSSVDLK 57

Query: 73  VFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ + +   EA  ++   YATT   +                   +   +N  I+FG E 
Sbjct: 58  IWESFEDFLEANRNIRLFYATTKTKQKYS---------------DVKYEENDFIMFGPES 102

Query: 130 WGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  E +          I+ P+ P+  SLN+S + +++++E    
Sbjct: 103 RGIPEEILNKNPERC---ITIPMIPMGRSLNLSNSAVIILYEAYRQ 145


>gi|78223582|ref|YP_385329.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens
           GS-15]
 gi|78194837|gb|ABB32604.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens
           GS-15]
          Length = 158

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 27/174 (15%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P          I+L++P++  N G +AR       T L LV  + G+ ++      A
Sbjct: 2   PEKPPFH-------IVLIEPEIPPNTGNIARLCGATG-TVLHLVG-KLGFSTDDRYLKRA 52

Query: 63  NADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                   V +    +L  A+          A     F  +   K+AA    E  F  + 
Sbjct: 53  G-LDYWSEVEIHYWDDLA-ALQ--------HAYPEGRF--IYTSKKAAKTHIEAAFK-EG 99

Query: 121 VGIIFGRERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
             I+FG+E  GL  EE+  +N    +  P+     SLN+S +  ++++E +  +
Sbjct: 100 DFIVFGKETVGLP-EELIEANRENTVRIPIFGKVRSLNLSTSAGIVLYEALRQT 152


>gi|113972063|ref|YP_735856.1| RNA methyltransferase [Shewanella sp. MR-4]
 gi|117922366|ref|YP_871558.1| RNA methyltransferase [Shewanella sp. ANA-3]
 gi|113886747|gb|ABI40799.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-4]
 gi|117614698|gb|ABK50152.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. ANA-3]
          Length = 154

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N   +QL L+ P      EK    +      + +V    N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKN 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+A    +  TT  +R +                 +   ++  ++FG E  GL 
Sbjct: 63  FDAFLEAMAGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107

Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               E I     +   P+     SLN+S AV ++ +E    
Sbjct: 108 MPIIESIPTEQRL-RIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 239

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L + +   N G +AR+   F    + +   R    ++    SSA A   I    V +N
Sbjct: 95  IMLDEIEDPYNFGAIARSAEAFGFHGIIIPKRRSALVNDAVYKSSAGAIESIKVA-VVNN 153

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L + I++L     ++Y  T                   + ++   G N+ I+ G E  GL
Sbjct: 154 LSQTISELKENSIWVYGAT--------------MEGDPICDQDLVG-NICIVIGNEGKGL 198

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      + +IS P+     SLN S A  ++++E    +
Sbjct: 199 GHAVEKNCDELISIPMLGSINSLNASVACGIILYEVTRQT 238


>gi|238764459|ref|ZP_04625407.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
 gi|238697271|gb|EEP90040.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
          Length = 167

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        +++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62

Query: 77  LK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +     E +       A  AR       + A        +  +    N  ++FG E  G
Sbjct: 63  YQAFLDSEKLDGAQSTGANAAR-------LFALTTKGTPAHSAVEYQLNDYLLFGPETRG 115

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 116 LPPNVLEALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQ 157


>gi|313206869|ref|YP_004046046.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312446185|gb|ADQ82540.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315023943|gb|EFT36945.1| putative rRNA methylase [Riemerella anatipestifer RA-YM]
 gi|325335693|gb|ADZ11967.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 257

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 23/169 (13%)

Query: 11  SAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            ++   +I+V+  +   N+G + R+   F +  L + +P+  + +     SS      + 
Sbjct: 106 PSENASVIIVESIEKPGNLGAILRSCEAFGIDALIVTDPKVDFYNPNVIRSSVGC---LF 162

Query: 70  SVRVF-----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            + +F     S L   +   HF   TT              E A +++++ F      +I
Sbjct: 163 GMNIFQADNQSTLA-FLKKHHFKVYTT-----------FMSEDAQLIHQKDFK-TKTALI 209

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           FG E  G+++     +  I+  P+     SLN+S AV +  +E +   +
Sbjct: 210 FGTEHSGISDFWKGKAENIL-VPMAGTIDSLNLSNAVAVSCYEILRQRL 257


>gi|293379119|ref|ZP_06625270.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           PC4.1]
 gi|292642260|gb|EFF60419.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           PC4.1]
          Length = 167

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 4   IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           S+L+  +  L           +    +++     +   E    G+    +FG+E  GL  
Sbjct: 61  SDLEAFLTFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 110

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 111 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 150


>gi|254482693|ref|ZP_05095931.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
           proteobacterium HTCC2148]
 gi|214037052|gb|EEB77721.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
           proteobacterium HTCC2148]
          Length = 157

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++  N G + R   N   + L L+ P      EK    +       +   V   
Sbjct: 7   IVLYQPEIPPNTGNIMRLCANTGCS-LHLIEPLGFDLDEKKLRRA--GLDYREFAEVSVY 63

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +           +  TT  +         P   A   +          ++FG E  G
Sbjct: 64  PELNTFTAKHPQCRLMGVTTKGS--------TPHHQAAYTS-------GDALLFGPETRG 108

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    ++       I  P+     SLN+S A  ++ +E +  
Sbjct: 109 LPASVLSKLPPQQRIRIPMLKNSRSLNLSNAAAVITYEALRQ 150


>gi|296273391|ref|YP_003656022.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM
           7299]
 gi|296097565|gb|ADG93515.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM
           7299]
          Length = 154

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L++P++  N+G + R  +  N  +L L+ P       +     A  D   D  V  + 
Sbjct: 4   IVLLEPRIPGNVGTIGRLAFAMNC-RLHLIKPYGFGEITEKEVRRAGLDYWFDLDVTEYE 62

Query: 76  NLKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           N+++      + D HF +ATT   +             +  + +   G      FGRE  
Sbjct: 63  NIEDFWSKNPLNDRHF-FATTKTKQ-------------VYFDAKYEVGDY--FYFGREDA 106

Query: 131 GLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL  + +  +    I+ P+     SLN++ +V ++ +E +  
Sbjct: 107 GLPEDLLVKNEKGCITIPMTNDARSLNMANSVSIVAYEALRQ 148


>gi|215405386|ref|ZP_03417567.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|215413262|ref|ZP_03421953.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|215447687|ref|ZP_03434439.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
 gi|289747187|ref|ZP_06506565.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|294995866|ref|ZP_06801557.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 210]
 gi|298526847|ref|ZP_07014256.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|289687715|gb|EFD55203.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|298496641|gb|EFI31935.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|326905207|gb|EGE52140.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis W-148]
          Length = 154

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
            V P++  N G   R        +L LV P     SE     +      + SV V ++L 
Sbjct: 6   FVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64

Query: 79  ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              EA++    ++A TA               A  L   +       ++FG E  GL  +
Sbjct: 65  HAWEALSP-ARVFAFTA--------------QATTLFTNVGYHAGDVLMFGPEPTGL--D 107

Query: 136 EIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  L++  I+     P+     SLN+S A  + V+E       +  
Sbjct: 108 EATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153


>gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
 gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
          Length = 247

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 10/147 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G +AR    F    + L+       ++KA  ++  A   ++ V  F +  E   
Sbjct: 109 QDPGNLGTLARTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRLNFVT-FDSFDELER 167

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    AR          P+    V  ER+       ++ G E  GL+++ +     
Sbjct: 168 --------AARELGMDLYAAEPRADEDVDPERVGDVAKACLVLGTEGQGLSDDALRAC-K 218

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
            ++ P++    SLN++ A  ++ +   
Sbjct: 219 PVAVPMSGEMESLNVAIAGGILCYLMR 245


>gi|282882563|ref|ZP_06291184.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|300814611|ref|ZP_07094862.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297705|gb|EFA90180.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|300511230|gb|EFK38479.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 154

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 27/159 (16%)

Query: 21  DPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           +P++  N G +AR      L  T+L L+ P      +K    +      +  + ++ +  
Sbjct: 8   EPEIPFNTGAIARTC---GLTNTRLHLIKPLGFEIDDKHVKRAGLDYWHLVDISIYDSYD 64

Query: 79  EAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + +       F  ATT                A  L   +       I+FG E  GL  E
Sbjct: 65  DLLKRFPNSRFYLATT---------------KASKLYTDVKYNDEDVIVFGPETRGLP-E 108

Query: 136 EIALSNA--IISFPVNPLFP-SLNISQAVLLMVWECMEN 171
           ++  SN    I  P+   +  SLN+S +  ++++E +  
Sbjct: 109 DLIFSNYDDAIKIPMLKNYGRSLNLSNSANIILFEALRQ 147


>gi|83719588|ref|YP_440980.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|167617773|ref|ZP_02386404.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis Bt4]
 gi|257140366|ref|ZP_05588628.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83653413|gb|ABC37476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis E264]
          Length = 156

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A      +  +  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAG-LDYHEYAQMHVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +    +A    D    +A T R    F              +R F   +   +FG E  
Sbjct: 61  RDWDAFVAAEAPDPARTFAFTTRGSGRFH-------------DRAFEPGDW-FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GLT   +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLTPALVERFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|296138668|ref|YP_003645911.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026802|gb|ADG77572.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 154

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 19/166 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+  +P++  N G   R        +L LV P     SE     +      +  VRV +
Sbjct: 3   RILFFEPRIAPNTGNAIRLAAVTGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLAHVRVHA 61

Query: 76  NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +L+ A + L    ++A TA  R                   I       ++FG E  GL 
Sbjct: 62  DLEAAWSALRPERVFAFTAHARRYHH--------------EIAYSAGDVLMFGPEPTGLP 107

Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E +   +    +  P+     SLN+S A  ++ +E          
Sbjct: 108 PEALGDPHVTESVRIPMLASRRSLNLSNAAAVVAYEAWRQQGFDGG 153


>gi|229489465|ref|ZP_04383328.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus
           erythropolis SK121]
 gi|229323562|gb|EEN89320.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus
           erythropolis SK121]
          Length = 166

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 23/159 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
             +P++  N G   R +      +L LV P     SE     +      + +V V  NL 
Sbjct: 18  FHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVHENLT 76

Query: 79  EAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            A   +    ++A TA               A      I       ++FG E  GL+ E 
Sbjct: 77  AAWEAVTPARVFAFTA--------------HATTSYADIAYQPGDVLLFGPEPTGLSEEV 122

Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171
           +  ++  ++     P+ P   SLN+S A  L+ +E    
Sbjct: 123 L--ADEHVTERLRIPMLPGRRSLNLSNAAALVTYEAWRQ 159


>gi|319650275|ref|ZP_08004420.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317398026|gb|EFV78719.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 155

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           ++L  P++  N G +AR     + T L L+ P      +K    +         V++   
Sbjct: 3   VVLYQPEIPANTGNIARTCAATD-TTLHLIRPLGFSTDDKMLKRA--GLDYWQFVKIVYH 59

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L +         + Y T    +   K       + +        G++   IFG+E  G
Sbjct: 60  ESLDDFFNSSEGGEYFYLT----KYGTKPHSTFDYSNV--------GKDYYFIFGKETTG 107

Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L     EI      +  P+N    SLN+S    ++V+E +   
Sbjct: 108 LPKNIIEINK-ERALRVPMNDKVRSLNLSNTAAILVYEALRQQ 149


>gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68]
 gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
 gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1]
 gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14]
 gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
          Length = 181

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 18/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D   VR +
Sbjct: 17  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDVRFY 73

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL E +      YA    ++     +++        +E    G     +FGRE  GL  
Sbjct: 74  DNLAEFMD-----YA----SKQGRVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLP- 123

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    I  P+N     SLN+S    ++V+E +   
Sbjct: 124 EDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQQ 164


>gi|254251337|ref|ZP_04944655.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
 gi|124893946|gb|EAY67826.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
          Length = 156

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHG 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  DWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFLPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  E +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPAELLERFPGEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 275

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 12/171 (7%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           T     L+ S K   I L + +   N+G + R      +  + LV       S +   ++
Sbjct: 110 TTTLEALETSGKKRFIALYEARDPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRAT 169

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A  +  +  V ++  E               R     + A      + +++       
Sbjct: 170 MGA--LFSNNIVLASFTEFDN----------WRRKANIKMAAASVNGTMRHDQAEYSSKS 217

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I+ G E+ G+        + +I  P+     SLN++QA  +M +E  + S
Sbjct: 218 VILMGNEQSGIPEAAENACDILIKIPMAGAADSLNLAQATAIMTYEVWKGS 268


>gi|288942723|ref|YP_003444963.1| tRNA/rRNA methyltransferase SpoU [Allochromatium vinosum DSM 180]
 gi|288898095|gb|ADC63931.1| tRNA/rRNA methyltransferase (SpoU) [Allochromatium vinosum DSM 180]
          Length = 158

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +P++  N G V R   N    +L L+ P      ++    +         VR  ++
Sbjct: 4   IILYEPEIPPNTGNVMRLTANLG-ARLHLIEPLGFSLDDRQLRRAGLDYREWADVRTHAS 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L   +A L    + A + R R               ++     G     +FG E  GL  
Sbjct: 63  LAACLATLEQPRLLAVSTRGR------------VPYVDLEFQPGD--AFLFGPETRGLPE 108

Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             +   +    +  P+ P   SLN+S AV ++++E       +    ++
Sbjct: 109 SVLESVSEEHRLQIPMRPGNRSLNLSNAVAVVLYEAWRRQGFAGAAEIR 157


>gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 225

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 14/173 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
            +N+  V R    F +  L  V  P    P ++ +  S NAD  +D VR +S+  E +A 
Sbjct: 38  PQNVNAVLRTCEAFGIQTLHAVEGPMK--PYDRNKKISQNADKWLD-VRRWSSTAECLAH 94

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L        R+           E +  +    F+G  V ++FG E+ G++ E +A+++A 
Sbjct: 95  L--------RSEGFAIYATHLGERSTPMAGLSFAG-KVALVFGNEQRGVSEEALAVADAC 145

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
            + P+     SLN+S A  + +   +E   V   ++    +  A       F 
Sbjct: 146 YAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRHGDLPDDEAQVLR-ERFY 197


>gi|257888171|ref|ZP_05667824.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257896938|ref|ZP_05676591.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|257824225|gb|EEV51157.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257833503|gb|EEV59924.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
          Length = 168

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           S+L+  +  L           +    +++     +   E    G+    +FG+E  GL  
Sbjct: 62  SDLEAFLTFL----------GDRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 112 AFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 151


>gi|260774703|ref|ZP_05883607.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609359|gb|EEX35510.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 158

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 56/173 (32%), Gaps = 29/173 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N     L L+ P      EK    +       D  RV   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60

Query: 74  ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                    L++          TT   +     V A  +   VL            +FG 
Sbjct: 61  KNYQAFVEYLEKERQTFRIFACTT---KTTGHHVDANFQQGDVL------------LFGP 105

Query: 128 ERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  GL  E I        I  P+ P   SLN+S AV ++ +E          +
Sbjct: 106 ETRGLPAELIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158


>gi|153834908|ref|ZP_01987575.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01]
 gi|148868634|gb|EDL67718.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01]
          Length = 159

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  +         +      TT    +              ++ +   G    ++FG E
Sbjct: 63  YQAFLEYLEKEKQGNYRLFACTTKTTGH-------------HVDAKYQEGD--VLMFGPE 107

Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL  E I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 108 TRGLPAEVIESLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|323498128|ref|ZP_08103132.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323316839|gb|EGA69846.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 158

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 13/165 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +  I  L        + R N++      K     ++     G    ++FG E  GL  E
Sbjct: 63  YQAFIEYLE-------KERENYRIFACTTKTTGHHVDANFQQGD--VLLFGPETRGLPAE 113

Query: 136 EIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            I        I  P+ P   SLN+S AV ++ +E          +
Sbjct: 114 LIESMPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQMGFEGAQ 158


>gi|69249442|ref|ZP_00604978.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO]
 gi|293559441|ref|ZP_06675979.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1162]
 gi|294616195|ref|ZP_06695992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1636]
 gi|294618817|ref|ZP_06698343.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1679]
 gi|68194153|gb|EAN08686.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO]
 gi|291590950|gb|EFF22662.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1636]
 gi|291594940|gb|EFF26291.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1679]
 gi|291606596|gb|EFF35992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1162]
          Length = 167

 Score = 73.6 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 4   IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           SNL+  +        T   NR     +++     +  +E    G+    +FG+E  GL  
Sbjct: 61  SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 110

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 111 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 150


>gi|291619492|ref|YP_003522234.1| TrmH [Pantoea ananatis LMG 20103]
 gi|291154522|gb|ADD79106.1| TrmH [Pantoea ananatis LMG 20103]
          Length = 233

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 25/179 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS++ R  +S++       +V    ++ +AI+
Sbjct: 30  PHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVNVVTHRSINDAIS 84

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      I AT     N     +  +E        I   +   I+ G+E+ G+T+E +A
Sbjct: 85  HLKTQNMQILAT-----NLSADAVDFRE--------IDYTKPTCILMGQEKTGITDEALA 131

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           L++  I  P+  +  SLN+S A  L+++E       ++    ++ +  A + +     +
Sbjct: 132 LADRHIIIPMVGMVQSLNVSVASALILYEAQRQR-QNAGMYQRQTSLLAPEEQQRLLFE 189


>gi|114321720|ref|YP_743403.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228114|gb|ABI57913.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 153

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV+P++  N G V R   N     L LV+P      +     +       +  RV   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTG-AHLHLVHPLGFRLDDTRLRRA--GLDYHEWARVAEH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +        R R    ++        V   ++       ++FG E  GL  
Sbjct: 61  PSLVDCLRQV--------RPRRA-WALST---HGSVGYHQVRYAPGDALVFGCETGGLRR 108

Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E+   +    +  P+ P   S+N+  +V ++++E +   
Sbjct: 109 -ELTRFSPGRRLRLPMRPESRSMNLGNSVSVVLYEALRQQ 147


>gi|238794389|ref|ZP_04638000.1| Methyltransferase [Yersinia intermedia ATCC 29909]
 gi|238726290|gb|EEQ17833.1| Methyltransferase [Yersinia intermedia ATCC 29909]
          Length = 165

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 32/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R   N    QL L+ P      +K    +       +   +   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRA--GLDYHEFASIKHH 60

Query: 74  --------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                     NL  A         TT                    +  +    +  ++F
Sbjct: 61  HDYQAFLDCENLDSA-QPARLFALTT---------------KGTPAHSAVSYQADDYLLF 104

Query: 126 GRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  GL    +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 105 GPETRGLPASVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 152


>gi|331698389|ref|YP_004334628.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953078|gb|AEA26775.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 167

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 26/180 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+L+ P++ +N G + R   N    QL LV P       +    +      +  V+V  
Sbjct: 3   RIVLLTPEIPQNTGAIIRLAANTG-AQLHLVEPLGFSLDARHVRRAGLDYHELADVQVHR 61

Query: 76  NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +L  A A L       + TT              E   VL            +FGRE  G
Sbjct: 62  DLDAAWAALLPARVHAFTTTGTE----HHTDVDYERGDVL------------LFGRESTG 105

Query: 132 LTNEEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPA 187
           L   E+  +  +   +  P+ P   SLN++ AV + V+E         +   V  +   A
Sbjct: 106 LP-AEVQAAPQVTDRVRLPMIPGSRSLNLANAVSVAVYEAWRRLGFAGAATPVGPRAGEA 164


>gi|322385965|ref|ZP_08059605.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321269948|gb|EFX52868.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 183

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 21  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDISFY 77

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +        R     K         +   E   +      +FGRE  GL  
Sbjct: 78  ESLDDFMKQMD------GRLYLISK-----FAEKVYSEENFSAEGPHYFMFGREDTGLP- 125

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 126 EEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 179


>gi|319424788|gb|ADV52862.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           putrefaciens 200]
          Length = 154

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N    QL L+ P      EK    +      + +V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+     +  TT  +R +               E  F+  +V ++FG E  GL 
Sbjct: 63  FDAFLEAMTGKRIMACTTKGSRPHT--------------ELSFAKNDV-LLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654]
          Length = 267

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 21/178 (11%)

Query: 8   LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +  + PV++L+       N+G + R+   F     R V       + +  + +  A  
Sbjct: 104 MGDGDRPPVVVLLDRVTDPHNVGAILRSAEVFGA---RAVIGTKHHSAPETGALAKTASG 160

Query: 67  VIDSVRV--FSNLKEA---IADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            ++       +NL +A   + D+ + +        ++    L+P            SG  
Sbjct: 161 ALERQPYLRVTNLADAMGTLKDMGYTVLGLAGEADDDIADALSP-----------LSGHA 209

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           V ++ G E  GL  +     +A++  P    F SLN+S A  + ++       V+   
Sbjct: 210 VALVMGAEGPGLRQKTRETCDALVKIPFAAEFGSLNVSNAAAVSLYAVTRAQGVAPRP 267


>gi|237736752|ref|ZP_04567233.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420614|gb|EEO35661.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 152

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L++P++  N G + R   + N   T+L L+ P      EK    +      +  + V+
Sbjct: 3   IVLLNPEIPYNTGNIGRTSVLTN---TKLHLIKPLGFSLDEKQLKRAGLDYWHLVDLVVW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +E +         YATT   +                   I   +N  ++FG E  G
Sbjct: 60  ESYEEFVEANKGARIFYATTKTKQRYS---------------DIEFKENDFVMFGPESRG 104

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  EEI  ++    I+ P+  +  SLN+S +  ++++E +  +
Sbjct: 105 IP-EEILNAHKENCITIPMIDMGRSLNLSNSAAIILYEALRQT 146


>gi|170699785|ref|ZP_02890818.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           IOP40-10]
 gi|171321115|ref|ZP_02910092.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MEX-5]
 gi|172061809|ref|YP_001809461.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|313471799|sp|Q0BBL1|TRML_BURCM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|170135312|gb|EDT03607.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           IOP40-10]
 gi|171093605|gb|EDT38765.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MEX-5]
 gi|171994326|gb|ACB65245.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MC40-6]
          Length = 156

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           +ILV P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VILVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAEMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  DWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  + +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPADVLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|113474137|ref|YP_720198.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110165185|gb|ABG49725.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 153

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 60/160 (37%), Gaps = 16/160 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P I+LV PQ+ +N G VAR       T+L LV P     S++    +         V++ 
Sbjct: 2   PNIVLVYPQIPQNTGNVARTCAATK-TELHLVGPLGFEISDRYLKRA--GLDYWPYVKLN 58

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++  E     H       R     K          +   +     N  ++FG E  GL
Sbjct: 59  YHNDWAE-FKVYHHKLG--GRLIGFSK-------MGKLNYTKFQYQTNDWLLFGSETNGL 108

Query: 133 TNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171
             + +   +A +  P   P   SLN+S +  L ++E    
Sbjct: 109 PKDVLNYCSATLYIPMTQPNVRSLNLSVSAALGLFEARRQ 148


>gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis
           excentricus CB 48]
 gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis
           excentricus CB 48]
          Length = 322

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 67/166 (40%), Gaps = 11/166 (6%)

Query: 13  KGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + PV++++D     +NIG + R    F    L + +            ++A A   +   
Sbjct: 163 ERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIMQDRHSPVMQGVLAKTAAGAMDRVPFA 222

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           RV +NL  A+  L               ++ ++VL  +        +  S + + I+ G 
Sbjct: 223 RV-TNLSRALESLTENGFVSLGMAGEAEHSLQAVLEQQGW-----RQAGSPRALVIVMGS 276

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E  GL        + ++  P+   F SLN+S A  + ++E +  ++
Sbjct: 277 EGEGLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALYEALGRAV 322


>gi|327395801|dbj|BAK13223.1| tRNA guanosine-2'-O-methyltransferase TrmH [Pantoea ananatis
           AJ13355]
          Length = 233

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 25/179 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS++ R  +S++       +V    ++ +AI+
Sbjct: 30  PHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVNVVTHRSINDAIS 84

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      I AT     N     +  +E        I   +   I+ G+E+ G+T+E +A
Sbjct: 85  HLKTQNMQILAT-----NLSADAVDFRE--------IDYTKPTCILMGQEKTGITDEALA 131

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           L++  I  P+  +  SLN+S A  L+++E       ++    ++ +  A + +     +
Sbjct: 132 LADRHIIIPMVGMVQSLNVSVASALILYEAQRQR-QNAGMYQRQASLLAPEEQQRLLFE 189


>gi|269966824|ref|ZP_06180897.1| rRNA methyltransferase [Vibrio alginolyticus 40B]
 gi|269828491|gb|EEZ82752.1| rRNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 159

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +  +  L        R  N        K     ++ +  +G    ++FG E  GL  E 
Sbjct: 63  YQAFLEYLEK-----ERQGNYRLFACTTKTTGHHVDAQYQTGD--VLMFGPETRGLPAEI 115

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 116 IDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|257869740|ref|ZP_05649393.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
 gi|257803904|gb|EEV32726.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
          Length = 167

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+  N G +AR     N T L L+ P      +K    +         V +   
Sbjct: 4   IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKHLKRA--GLDYWHDVHITYH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132
            +L   ++ L              + +    + A  +   +   + ++   +FG+E  GL
Sbjct: 61  KDLAAFMSFL------------GDRPLYLISKFANRVYSEVDYTTHEDQFFLFGKETTGL 108

Query: 133 TNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
               +   ++  +  P+N     SLN+S    L+++E +   
Sbjct: 109 PETFMREHADKCLRIPMNDAHVRSLNLSNTAALIIYEALRQQ 150


>gi|296122015|ref|YP_003629793.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296014355|gb|ADG67594.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 262

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 19/152 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G V RA   F +  +     R    S  A   SA     I   +   NL  A+ 
Sbjct: 126 QDPHNVGAVFRAAAFFGVRGIIATRDRSAPLSGTAYDVSAGGLESIPFAQ-PPNLARALE 184

Query: 83  ----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                  ++  T+              E A      I + +   I+ G E  GL    + 
Sbjct: 185 LAKKSGVWVLGTS--------------EHAQQPLSSIKADRPWLIVIGNEEGGLRRLTLE 230

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L + + + P      SLN+S A  ++++    
Sbjct: 231 LCDEVCTIPSQGAVGSLNVSVATGILLYALSR 262


>gi|289759523|ref|ZP_06518901.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
 gi|289715087|gb|EFD79099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
          Length = 172

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 70/189 (37%), Gaps = 30/189 (15%)

Query: 1   MTPYAPQ-----LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           M+P  P      L +  +   ++ V P++  N G   R        +L LV P     SE
Sbjct: 1   MSPDRPANGHRALCHDRRMFRLLFVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSE 59

Query: 56  KARSSSANADCVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
                +      + SV V ++L    EA++    ++A TA               A  L 
Sbjct: 60  PKLRRAGLDYHDLASVTVHASLAHAWEALSP-ARVFAFTA--------------QATTLF 104

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWEC 168
             +       ++FG E  GL  +E  L++  I+     P+     SLN+S A  + V+E 
Sbjct: 105 TNVGYHAGDVLMFGPEPTGL--DEATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEA 162

Query: 169 MENSIVSSE 177
                 +  
Sbjct: 163 WRQHGFAGA 171


>gi|46200254|ref|YP_005921.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
 gi|55980023|ref|YP_143320.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|46197882|gb|AAS82294.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
 gi|55771436|dbj|BAD69877.1| RNA methyltransferase [Thermus thermophilus HB8]
          Length = 149

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 23/159 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75
           +L  P++ +N G VAR         L L+ P     S      +         V  R+  
Sbjct: 5   VLYQPEIPQNAGNVARTAAALGWP-LHLIRPLGFLLSSPKLKRA--GLDYWPHVDLRLHD 61

Query: 76  NLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +     EA+     ++A +AR              A +   R   G    ++FG E  GL
Sbjct: 62  SFAAFLEALPRGARVFAFSARGE------------ASLYEARFREGDY--LLFGPESRGL 107

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +A    +   P+     SLN++ AV +  +E    
Sbjct: 108 PEEVLARFPTL-KIPMPGPVRSLNLAVAVGVAAYEAYRQ 145


>gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           johnsonii SH046]
 gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           johnsonii SH046]
          Length = 249

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79
             N+G   R      + +  +V PRD     +  AR  +A     +  ++V +    L +
Sbjct: 108 PHNLGACIRTAAAMGV-EAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQ 165

Query: 80  AIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
              + +  +  T          +L   E A+ L +  F+G  V ++ G E  GL     +
Sbjct: 166 IKDEFNVRVVGT----------MLD--EKALPLQQFDFTGTAVCVVMGAEDTGLRPITQS 213

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +  +  P+     SLN+S A  + ++E     
Sbjct: 214 QCDQTVYIPMAGNLQSLNVSVATGMALYEACRQR 247


>gi|255024638|ref|ZP_05296624.1| hypothetical protein LmonocyFSL_16396 [Listeria monocytogenes FSL
           J1-208]
          Length = 160

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 33/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E         F Y T        + V +         +   S ++   +FG+E  
Sbjct: 61  YDSLDEFFEKNEGGEFYYIT-----KFGRHVYS-------DIDYSDSNKDYFFVFGKETT 108

Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL       NEE       +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLPDSLLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151


>gi|224543716|ref|ZP_03684255.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523369|gb|EEF92474.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM
           15897]
          Length = 243

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 18/167 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  I+LV+P    N+G + R M  F    L ++ P     +     SS  A   +  + 
Sbjct: 90  KGNHIVLVNPMDMGNMGTIMRTMLGFGYQDLAIIRPAVDIFNPHVVRSSMGALFSL-RIH 148

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWG 131
            + ++ E + +                    P          ++       +IFG E  G
Sbjct: 149 YYESIDEYLKEF-------------GDHQCYPFMLKGAKNIHQVKPVTPHSLIFGNESSG 195

Query: 132 LTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  ++I ++    +  P      SLN++Q+V + ++   +++    E
Sbjct: 196 L--DDIYMTYGQSVFIPHTNAIDSLNLAQSVGIGLFHFSQDAFNKQE 240


>gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
           15579]
 gi|187774123|gb|EDU37925.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
           15579]
          Length = 160

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           I+L  P++ +N G +AR     N   ++L L+ P      EK    +           + 
Sbjct: 10  IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWKYLDLT 64

Query: 73  VFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ +   L+E   D +F ++TT                       +       I+FGRE 
Sbjct: 65  IYESYEELREKYKDSNFYFSTT---------------HGNNFYTDVKYSDGDFIVFGRES 109

Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            GL  +EI  S+    I  P+ N    SLN+S  V ++ +E +  
Sbjct: 110 SGLP-DEIRDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQ 153


>gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
 gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
          Length = 261

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L +      + K   +SA +      V +F       +
Sbjct: 120 QDPGNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSWF---QVPIFVT-----S 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL  +     +++N   +++A    A     ++   +   I+ G E  GL+N  I+L++ 
Sbjct: 172 DLTTVI---KKSKNKGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSLISLADN 228

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++S P+ P   SLN++ A  L+++E     I
Sbjct: 229 LVSIPLGPGVESLNVAIATALLLYEAKRQKI 259


>gi|104779663|ref|YP_606161.1| RNA methyltransferase [Pseudomonas entomophila L48]
 gi|95108650|emb|CAK13344.1| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas
           entomophila L48]
          Length = 153

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 23/166 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCA-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L   +  L    ++A T +  + F  V                      +FG E  GL
Sbjct: 61  ESLAGCLESLGNPRLFAFTTKGSHPFHEV--------------AYQPGDAFLFGPESRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             E +    +   +  P+ P   SLN+S  V + V+E       + 
Sbjct: 107 PAEVLDSLPAEQRLRLPMRPGCRSLNLSNTVAVTVYEAWRQQGFAG 152


>gi|120597274|ref|YP_961848.1| RNA methyltransferase [Shewanella sp. W3-18-1]
 gi|146294582|ref|YP_001185006.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
 gi|120557367|gb|ABM23294.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp.
           W3-18-1]
 gi|145566272|gb|ABP77207.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           putrefaciens CN-32]
          Length = 154

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N    QL L+ P      EK    +      + +V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+     +  TT  +R +                 +   ++  ++FG E  GL 
Sbjct: 63  FDAFLEAMTGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 108 MAIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
          Length = 233

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 18/152 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83
           NI  V R+     + Q+  V     WP +  R    +++ +   +D+V+ +   +EA   
Sbjct: 32  NIAAVLRSADCVGIHQIHAV-----WPDDDMRVSGNTASGSQQWVDTVKHY-TFEEA--- 82

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
            H  +      +   + +      + V    I   Q   I+ G ER G++ E IA ++  
Sbjct: 83  -HQAF-----KKQKMQVLTTTFSDSAVDFREIDYTQPTAIVMGNERDGVSAEAIAAADQH 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           I  P+  +  SLN+S A  L+++E      V+
Sbjct: 137 IIIPMRGMVQSLNVSVAAALVMYEAQRQREVA 168


>gi|294497237|ref|YP_003560937.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM
           B1551]
 gi|295702608|ref|YP_003595683.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium
           DSM 319]
 gi|294347174|gb|ADE67503.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM
           B1551]
 gi|294800267|gb|ADF37333.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium
           DSM 319]
          Length = 152

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSN 76
           L  P++  N G +AR     N T L LV P      +K    +       +  +V    +
Sbjct: 2   LFQPEIPANTGNIARTCAATN-TTLHLVRPLGFSTDDKMLKRA--GLDYWEFVNVVYHDS 58

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--- 133
           L+E                  F  +    +      +     Q+   +FGRE  GL    
Sbjct: 59  LEEVFEKY---------PEAGFYFITKFGQQPHTTFDYSDLEQDHFFVFGRETKGLPKHI 109

Query: 134 -NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             E +      +  P+     SLN+S    ++++E +   
Sbjct: 110 IEENMERC---LRLPMTENVRSLNLSNTAAILIYEALRQQ 146


>gi|258614728|ref|ZP_05712498.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|293553070|ref|ZP_06673712.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1039]
 gi|293568336|ref|ZP_06679659.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1071]
 gi|294621972|ref|ZP_06701117.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           U0317]
 gi|291588945|gb|EFF20770.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1071]
 gi|291598451|gb|EFF29523.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           U0317]
 gi|291602779|gb|EFF32989.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1039]
          Length = 170

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       +  ++   
Sbjct: 7   IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           SNL+  +        T   NR     +++     +  +E    G+    +FG+E  GL  
Sbjct: 64  SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 113

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 114 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 153


>gi|257880323|ref|ZP_05659976.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257882177|ref|ZP_05661830.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257885370|ref|ZP_05665023.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257890982|ref|ZP_05670635.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257894237|ref|ZP_05673890.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|260562373|ref|ZP_05832887.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|257814551|gb|EEV43309.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257817835|gb|EEV45163.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257821226|gb|EEV48356.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257827342|gb|EEV53968.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257830616|gb|EEV57223.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|260073297|gb|EEW61638.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
          Length = 168

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       +  ++   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           SNL+  +        T   NR     +++     +  +E    G+    +FG+E  GL  
Sbjct: 62  SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 112 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYEALRQQ 151


>gi|313634054|gb|EFS00734.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL
           N1-067]
 gi|313638638|gb|EFS03765.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL
           S4-171]
          Length = 169

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLTY 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + ++ +     H            F  +           +   + ++   IFG+E  GL 
Sbjct: 61  YDSMDDFFEKNH---------GGEFYYITKFGRHLYSDIDYSDTAKDYFFIFGKETTGLP 111

Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +E+  +N    +  P+     SLN+S    ++ +E +   
Sbjct: 112 -DELLQANEEHCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151


>gi|27364652|ref|NP_760180.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6]
 gi|37681300|ref|NP_935909.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|320155047|ref|YP_004187426.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|27360797|gb|AAO09707.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6]
 gi|37200051|dbj|BAC95880.1| predicted rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930359|gb|ADV85223.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 157

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 58/172 (33%), Gaps = 28/172 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N     L L+ P      EK    +       D  RV   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARVTRH 60

Query: 74  -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                F +  E   +      TT    +              ++ +   G    ++FG E
Sbjct: 61  KNYQAFLDYLEQRGEYRIFACTTKTTGH-------------HVDAQYRQGD--VLLFGPE 105

Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             GL  E I     +  I  P+ P   SLN+S AV ++ +E          K
Sbjct: 106 TRGLPMEVIESLPMSQRIRIPMMPDARSLNLSNAVAIIAFEAWRQLGFQGAK 157


>gi|94309202|ref|YP_582412.1| RNA methyltransferase TrmH, group 2 [Cupriavidus metallidurans
           CH34]
 gi|93353054|gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34]
          Length = 156

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 65/164 (39%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++  N G V R   N    QL LV P  G+P E AR   A      +    RV 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAG-LDYHEYATMRVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +    +A    D   ++A T      F  V  AP +                 +FG E 
Sbjct: 61  ESWDALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDW---------------FVFGSET 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  E  E   S   I  P+ P   SLN+S  V ++V+E    
Sbjct: 106 RGLAPERREWFPSAQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149


>gi|212704324|ref|ZP_03312452.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098]
 gi|212672286|gb|EEB32769.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098]
          Length = 161

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 12/158 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L +P++  N G +AR   +  +  L L+ P      ++    +         VR  V+
Sbjct: 3   IVLFEPEIPPNTGNIARLCASTGIH-LNLIEPLGFKLEDRYLKRA--GLDYWPHVRMDVW 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +         ++ A TA N       +          +      +  ++FG E  GL  
Sbjct: 60  PDWD------SWLAAATAENGGTPPRCVMTSARGGEPLQHFAFAPDDCLVFGPETRGLPP 113

Query: 135 EEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171
           E +  S   +  P+      S+N+S A  ++++  M +
Sbjct: 114 EILKRSPYKVRIPMLKDSVRSINLSTAAGIVLFTAMSS 151


>gi|319938705|ref|ZP_08013069.1| TrmH family RNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319811755|gb|EFW08021.1| TrmH family RNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 170

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 8   IVLFEPQIPQNTGNIARTCAATN-SPLHIILPMGFPIDDRKMKRA--GLDYWDKLDITYY 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL+E ++ +                +++     + + E   +  N   +FGRE  GL  
Sbjct: 65  DNLEEFMSKMD-----------GQLYLISKFAEKVYVEENFATAGNHYFMFGREDKGLP- 112

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+   ++    +  P+N     SLN+S  V ++V+E +   
Sbjct: 113 EDFMRAHSEKALRIPMNDEHVRSLNLSNTVCMLVYEALRQQ 153


>gi|212640614|ref|YP_002317134.1| rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212562094|gb|ACJ35149.1| rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 238

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 17/178 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N   V R+   F +  + +V      P E  +  + +AD  + +V   S++++AI  L
Sbjct: 59  PHNQAAVLRSAEAFGIQDVHVV--TGAAPFEPNKWVTRHADKWL-NVHKHSSIEQAIRHL 115

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +N ++   +      +  E+I   +   ++FG E  G++ E +AL++   
Sbjct: 116 Q---------QNGYQVYASYLGEGTIPLEQIDVSKPTVLLFGNEHRGVSEEALALADGKF 166

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
             P+N    S NIS A  + ++E  + +   + +  +   + A K E+    ++    
Sbjct: 167 VIPMNGFVQSFNISVAAAISLYEITKRAKQVAGE--RYHLSLAEKKEI---YEHWMKL 219


>gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           Bf]
 gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657]
 gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           Bf]
 gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 155

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--- 71
           I+L  P++ +N G +AR     N   ++L L+ P      EK    +         +   
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWQYLDLS 59

Query: 72  --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               +  L+E   D +F ++TT                       +       I+FGRE 
Sbjct: 60  IYESYEELREKYKDSNFYFSTT---------------HGNNFYTDVKYSDGDFIVFGRES 104

Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            GL  +EI  S+    I  P+ N    SLN+S  V ++ +E +  
Sbjct: 105 SGLP-DEIRDSDPSKCIRVPMINTTTRSLNLSNTVAIVTYEALRQ 148


>gi|330807038|ref|YP_004351500.1| RNA-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375146|gb|AEA66496.1| Putative RNA-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 151

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRA--GLDYHEYATLQRH 60

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L   +  L        TT  +R        P   A  +            +FG E  G
Sbjct: 61  ADLASCLESLGHPRLFAFTTKGSR--------PFHDASFVA-------GDAFLFGPESRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +    ++  +  P+     SLN+S  V + V+E    
Sbjct: 106 LPAEVLDALPADQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
 gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
          Length = 248

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 30/182 (16%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P +    K P I+L      V      N G +AR      +  + +        +  A  
Sbjct: 87  PFVYEQGKDPFIVLLDGVTDVR-----NFGAIARTCECAGVDAIVIPAKGSVSVNADAIK 141

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +SA A  V+   +   ++ +AI  L      ++A +              E A      +
Sbjct: 142 TSAGALHVLPVCK-EKSINQAIRFLQQSGVKVFAAS--------------EKAAENYTAV 186

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V I+ G E  G++ E + + + ++  P      SLN+S A  ++V+E +   +  
Sbjct: 187 KYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNE 246

Query: 176 SE 177
            +
Sbjct: 247 QQ 248


>gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 219

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 2   TPYAPQLQNSAK---GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
            P A  L    +   G +++L       N+G + R+   F + +  +   R   P   A 
Sbjct: 46  APPAESLNAVLEPTHGLLVVLDQITDPHNVGAILRSCAAFGV-RAVICQDRKSPPFFGAL 104

Query: 59  -SSSANADCVIDSVRVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
             ++      I  V+V      L         +                  EA   L + 
Sbjct: 105 CKTAVGTAETIPQVQVTNIADTLIALQEAGRHVIGLAG-------------EAEARLGDE 151

Query: 115 IFS--GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I +  G  + ++ G E  GL        +++   P+ P   SLN+S A  + ++E     
Sbjct: 152 IAAHAGPGLVLVLGAEGSGLRPRVAEHCSSLARIPMGPKAESLNVSNAAAIALYEASRFD 211

Query: 173 IVSSEKN 179
              + K 
Sbjct: 212 PRINPKP 218


>gi|320547370|ref|ZP_08041659.1| RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447966|gb|EFW88720.1| RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 190

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 28/168 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L  PQ+ +N G +AR     N T L ++ P      ++    +       D   V  +
Sbjct: 28  VVLFQPQIPQNTGNIARTCAATN-TPLHIIRPMGFPIDDRKMKRA--GLDYWDKLDVTFY 84

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
            +++E +                   +++     +  +E    G+    +FGRE  GL  
Sbjct: 85  DSIEEFMEKCD-----------GQVHLISKFAEKVYSDENYNDGKYHYFLFGREDKGLPE 133

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175
                N E       +  P+N     SLN+S  V ++V+E +      
Sbjct: 134 AFMRENPE-----KALRIPMNDEHVRSLNLSNTVCMIVYEALRQQAFP 176


>gi|56963235|ref|YP_174966.1| rRNA methylase [Bacillus clausii KSM-K16]
 gi|56909478|dbj|BAD64005.1| rRNA methylase [Bacillus clausii KSM-K16]
          Length = 157

 Score = 73.6 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 17/166 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L  P++  N G +AR     N T L L+ P      ++    +        +V +  +
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNAT-LHLIRPLGFSTEDRMLKRAGC--DYWPNVTIHYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +++E                  F  +           +   +  +   +FG+E  GL N
Sbjct: 62  DSIEELFETY---------PEGLFYYIETVGSKPYTDFDFRNTEVDHFFVFGKETTGLPN 112

Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             +  +N    +  P   L  SLN+S    ++++E +      + +
Sbjct: 113 H-LTEANTERCLRIPQTDLIRSLNLSNTAAIVLYEALRQQGFPNVQ 157


>gi|257876758|ref|ZP_05656411.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
 gi|257810924|gb|EEV39744.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
          Length = 167

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +PQ+  N G +AR     N T L L+ P      +K    +          ++   
Sbjct: 4   IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRA--GLDYWHDVNITYH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132
            +L    A + F+ A         + +    + A  +   +   +  +   IFG+E  GL
Sbjct: 61  KDLA---AFMDFLGA---------RPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGL 108

Query: 133 TNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
               +   +   +  P+N     SLN+S    L+++E +       
Sbjct: 109 PESFMREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQ 154


>gi|238754752|ref|ZP_04616104.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238707060|gb|EEP99425.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 157

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        S++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFTWDDKRLRRAGLDYHEFASIKRHHD 62

Query: 77  LKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +A  D      ++A T +          P  +A      +    N  ++FG E  GL 
Sbjct: 63  Y-QAFLDSEKPDRLFALTTKG--------TPAHSA------VNYQDNDFLLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 108 ASILEALPAQQKIRIPMQPNSRSMNLSNAVSVVVYEAWRQ 147


>gi|225012730|ref|ZP_03703165.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225003263|gb|EEG41238.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 264

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 17/158 (10%)

Query: 17  IILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+LV   P+   NIG + R      +  + + NP+  + +  +  SS     ++ +  + 
Sbjct: 115 IVLVIEAPEKPGNIGALYRTAAAAKIDAVIIANPKTDFYNPNSIRSSLGGIFILPTA-IA 173

Query: 75  SNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           S+++    + +     AT A N                  ++        ++ G E  GL
Sbjct: 174 SSIEVIAYLKENKITIATAAINSKAVPY------------DQFEYTPPCALVMGTESTGL 221

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
               +  +N  +  P+     SLN+S +  ++++EC  
Sbjct: 222 DQLWLNETNQNLMIPMADEVDSLNLSVSAGILMYECQR 259


>gi|167771637|ref|ZP_02443690.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
           17241]
 gi|167666277|gb|EDS10407.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
           17241]
          Length = 264

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F    + L        + K   +S           V  +L  +IA
Sbjct: 127 QDPGNVGTILRTAAAFGTDGVILSADCPDLYAPKVLRASMGGVFR-ARACVSDDLSASIA 185

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     R          P E ++ L +    G    ++ G E  G+  E  AL + 
Sbjct: 186 --------ALRAAGVPVWAAMPAEGSVSLRDISLHGGG-AVVVGNEGGGIAPELAALCDG 236

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            ++ P+ P   SLN + A  +++WE   
Sbjct: 237 ALTIPMEPGCESLNAAMAAGVILWEMYR 264


>gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 288

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 20/182 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +     + +  ++ PVI++ +      N+G + R         + +   R    +     
Sbjct: 121 LADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTVMK 180

Query: 60  SSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            +A A   +   RV  NL  A+ +L     ++Y   A++  +  ++              
Sbjct: 181 VAAGALEYLPVARVV-NLNRALEELKAAGFWLYGAAAKSGKSLHTINL------------ 227

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                +G++ G E  GL+       + ++S P+    PSLN S A  + ++E       +
Sbjct: 228 --TGAIGLVLGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQRWQN 285

Query: 176 SE 177
           S 
Sbjct: 286 SP 287


>gi|313680687|ref|YP_004058426.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
           14977]
 gi|313153402|gb|ADR37253.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
           14977]
          Length = 149

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 25/167 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+L +P++ +N+G VAR       T+L LV P      +     +         VR  
Sbjct: 2   PRIVLYEPEIPQNVGNVARTAAAT-RTELHLVRPFGFRWGDPRLKRA--GLDYWPHVRYV 58

Query: 75  -----SNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                +   EA+     ++A +T   R+ ++    P +                ++FG E
Sbjct: 59  LHDSWTAFLEALPAGARVWAFSTKAERSLYEVRFHPDDY---------------LLFGPE 103

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             GL    +A   A+   P+     SLN++ +V + V+E +  +   
Sbjct: 104 TRGLPQAVLARFPAL-RIPMPGPVRSLNLAVSVGVAVYEVLRQNPEP 149


>gi|283835989|ref|ZP_06355730.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
           ATCC 29220]
 gi|291068169|gb|EFE06278.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
           ATCC 29220]
          Length = 157

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D    +  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
               +    +  A  A         L  K            G    ++FG E  GL    
Sbjct: 54  FTAVLRHPDYA-AFVAAEHPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110

Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++  +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDVLPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|325675573|ref|ZP_08155257.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
 gi|325553544|gb|EGD23222.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
          Length = 181

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 19/166 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++  +P++  N G   R +      +L LV P     SE     +      + SV V  
Sbjct: 30  RVMFHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHE 88

Query: 76  NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL+ A   L    ++A TA               A      +       ++FG E  GL 
Sbjct: 89  NLEAAWDALRPERVFAFTA--------------HASTSYADLAYQPGDVLLFGPEPTGLA 134

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            + +      A +  P+ P   SLN+S A  ++ +E       +  
Sbjct: 135 QDVLEDPHVTAQVRIPMVPGRRSLNLSNAAAVVTYEAWRQHGFAGG 180


>gi|197301465|ref|ZP_03166545.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
           29176]
 gi|197299503|gb|EDY34023.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
           29176]
          Length = 169

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R       T+L L+ P     +EK+   +         + V   
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATG-TRLHLIEPLGFRINEKSLKRA--GMDYWKDLDVTTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  +         ATT                A  +   +   Q+  I+FG+E  G
Sbjct: 61  INYQDFLDKNPGAKIYMATT---------------KAHKVYTEVDYEQDCYIMFGKESAG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +       +  P+     SLN+  +V ++++E +  
Sbjct: 106 IPEEILVDHEEDCMRIPMIGDIRSLNLGNSVAIVLYEALRQ 146


>gi|332686349|ref|YP_004456123.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
           ATCC 35311]
 gi|332370358|dbj|BAK21314.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
           ATCC 35311]
          Length = 168

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 31/167 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+  N G +AR     N T L L+ P      +K    +         V +  +
Sbjct: 5   IVLFEPQIPANTGNIARTCAATN-TALHLIEPLGFSTDDKHLKRA--GLDYWSKVEITYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGL 132
            NL   + +L              K +    + A  +   I     Q    IFG+E  GL
Sbjct: 62  ENLPSFLNEL------------GDKPLHLITKFANQIYSEINYDDDQEHYFIFGKETTGL 109

Query: 133 T------NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                  N+E       +  P+N     SLN+S    L+++E +   
Sbjct: 110 PETFMRQNKE-----KCLRIPMNDQHVRSLNLSNTAALVIYEALRQQ 151


>gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str.
           Langeland]
 gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           F str. Langeland]
 gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           F str. 230613]
          Length = 155

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--- 71
           I+L  P++ +N G +AR     N   ++L L+ P      EK    +         +   
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWQYLDLS 59

Query: 72  --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               +  L+E   D +F ++TT                       +       I+FGRE 
Sbjct: 60  IYESYEELREKYKDSNFYFSTT---------------HGNNFYTDVKYSDGDFIVFGRES 104

Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            GL  +EI  S+    I  P+ N    SLN+S  V ++ +E +  
Sbjct: 105 SGLP-DEIKDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEALRQ 148


>gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC
           3502]
 gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall]
 gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra]
 gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto]
 gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
 gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 155

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--- 71
           I+L  P++ +N G +AR     N   ++L L+ P      EK    +         +   
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTN---SRLHLIKPLGFSLDEKHLRRA--GLDYWQYLDLS 59

Query: 72  --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               +  L+E   D +F ++TT                       +       I+FGRE 
Sbjct: 60  IYESYEELREKYKDSNFYFSTT---------------HGNNFYTDVKYSDGDFIVFGRES 104

Query: 130 WGLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            GL  +EI  S+    I  P+ N    SLN+S  V ++ +E +  
Sbjct: 105 SGLP-DEIRDSDPSKCIRVPMINTTTRSLNLSNTVAVVTYEALRQ 148


>gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 178

 Score = 73.2 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 16  STEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTAL 75

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNV 121
            A+  +D  +   N  EA+ +L        RN       +   E +I+LNE  +      
Sbjct: 76  GAEFTVDW-KYVDNAVEAVDNL--------RNGGYTVYSVEQAEGSIMLNELTLDRTGKY 126

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  
Sbjct: 127 AIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 174


>gi|324991314|gb|EGC23247.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK353]
          Length = 167

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D +++  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLKITYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 62  ESLDDFMEQMD------GRLYLISK-----FAEKVYSEENFEAEGSHYFMFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 110 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 163


>gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 225

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 18/175 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
            +N+  V R    F +  L  +  P    P ++ +  S NAD  +D VR +S+  E +A 
Sbjct: 38  PQNVNAVLRTCEAFGVQTLHAIEGPMK--PYDRNKKISQNADKWLD-VRRWSSTAECLAH 94

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L        R+           E +  +    F+G  V ++FG E+ G++ E +AL++A 
Sbjct: 95  L--------RSEGFAIYATHLGERSTPMAGLSFAG-KVALVFGNEQRGVSEEALALADAC 145

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL--LSFL 196
            + P+     SLN+S A  + +   +E   V   ++    + P  + ++    F 
Sbjct: 146 YAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH---GDLPEDEAQVLRERFY 197


>gi|73540016|ref|YP_294536.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
 gi|72117429|gb|AAZ59692.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
          Length = 156

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++  N G V R   N    QL LV P  G+P E AR   A      +    RV 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLVKPL-GFPLEDARMRRAG-LDYHEYATMRVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRER 129
            +    +A    D   ++A T      F  V   P +                 +FG E 
Sbjct: 61  DSWDALMASEQPDPSRMFALTTHGSTPFGQVSFQPGDW---------------FVFGSET 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  E  E    +  I  P+ P   SLN+S  V ++V+E    
Sbjct: 106 RGLAPERRESFPPSQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149


>gi|242374104|ref|ZP_04819678.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348229|gb|EES39831.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 156

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 14/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           I+L  P++  N G +AR       LT L L+ P      +K    +       + V +  
Sbjct: 5   IVLFQPEIPANTGNIARTCA--GTLTHLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI-- 58

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              E+I       A       N+  +    +          + +    IFGRE  GL N 
Sbjct: 59  TYHESIE------AFFESTEGNYYLLTKFGKQTYSDFNFSNTEEEHYFIFGRETTGLPNW 112

Query: 136 EIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                ++  +  P++    SLN+S    L+++E +   
Sbjct: 113 VKEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150


>gi|284923642|emb|CBG36739.1| putative RNA-methyltransferase [Escherichia coli 042]
          Length = 157

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++        E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLVFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 180

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 10/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      ++IL + +   NIG V R    F + ++ L       P+++   ++  A   +
Sbjct: 19  KAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATDSV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGR 127
               V + L  A+  L        + ++ +   +   E + +LN+   +G Q   IIFG 
Sbjct: 79  AWEYVENTL-SAVEKL--------KEQDVYIISIEQAENSTMLNDFQPNGKQKYAIIFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  G+  E ++ S+ +I  P      SLNIS +  + +WE   
Sbjct: 130 EVKGVEQEVVSTSDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172


>gi|259906785|ref|YP_002647141.1| putative tRNA/rRNA methyltransferase YibK [Erwinia pyrifoliae
           Ep1/96]
 gi|224962407|emb|CAX53862.1| rRNA methyltransferase CspR (SpoU class) [Erwinia pyrifoliae
           Ep1/96]
 gi|283476571|emb|CAY72399.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
 gi|310765995|gb|ADP10945.1| putative tRNA/rRNA methyltransferase YibK [Erwinia sp. Ejp617]
          Length = 156

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL ++ P      +K    +        ++R  ++
Sbjct: 3   IVLFEPEIPPNTGNIIRLCANTGF-QLHVIEPLGFAWDDKRLRRAGLDYHEFAAIRHHAS 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +         +A +   +  F   L  K           +G    ++FG E  GL    
Sbjct: 62  YE--------AFAASEAPQRLF--ALTTKGTPAHSAVSFQAGDY--LLFGPETRGLPARV 109

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 110 LDALPAQQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 146


>gi|163755971|ref|ZP_02163088.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1]
 gi|161324142|gb|EDP95474.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1]
          Length = 150

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 19/155 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74
           I+L++P++  N G + R       ++L LV P  G+    AR   A  D    ++ V ++
Sbjct: 5   IVLMEPEIPTNTGNIGRLSLASG-SKLHLVKP-FGFEITDARLKRAGLDYWQHLE-VHIY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N  E  A            +N  K ++          + I     + ++FG+E  GL+ 
Sbjct: 62  ENTAEFYA------------KNAGKKMVYLSSHGQKTYDEIPYEDELFLVFGKESVGLSE 109

Query: 135 EEIALSNAII-SFPV-NPLFPSLNISQAVLLMVWE 167
           E +  +   + + P+ +    SLN++ AV ++V+E
Sbjct: 110 EIVENNKEHLYTIPMFSEHIRSLNLANAVSIVVYE 144


>gi|326318591|ref|YP_004236263.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375427|gb|ADX47696.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 158

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 66/174 (37%), Gaps = 29/174 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G V R   N   T L LV P      +K    +       +   V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMEDKLMKRA--GLDYHEYAEVRQH 60

Query: 74  ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               + L++A  +   ++A TT      ++S+  P +                 +FG E 
Sbjct: 61  AGWTAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDW---------------FVFGAES 105

Query: 130 WGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GL  E       +  +   P+ P   SLN+S AV + V+E    +  +  +  
Sbjct: 106 RGLPPELRDAFPPAQRL-RLPMLPGQRSLNLSNAVAVTVYEAWRQNGFALPEPA 158


>gi|256830648|ref|YP_003159376.1| tRNA/rRNA methyltransferase SpoU [Desulfomicrobium baculatum DSM
           4028]
 gi|256579824|gb|ACU90960.1| tRNA/rRNA methyltransferase (SpoU) [Desulfomicrobium baculatum DSM
           4028]
          Length = 158

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 24/176 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I L +P++  N G +AR     + T+L L+ P      +K    +         V  R++
Sbjct: 3   IALYEPEIPPNTGTIARLCAA-STTRLNLIEPLGFSLDDKYLKRA--GLDYWPHVDKRIW 59

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +    +       +  T+AR    +       +                I+ G E  GL
Sbjct: 60  PSWPAFLEGRDPGRLVFTSARQGVAYHRFSFRADD--------------IIVLGPETRGL 105

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             E +  +  +I  P+     S+N++ A  ++++E    +    E +++E    A 
Sbjct: 106 PPEVLHDAQDLIRIPIWGEVRSVNLANAAAVLLYEAYRQT---GELDLREGRPAAP 158


>gi|300313451|ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300076236|gb|ADJ65635.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G + R   N    QL LV P  G+P + A+   A  D     +++V  
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTG-AQLHLVEPL-GFPLDDAKMRRAGLDYHEYANMQVHQ 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-----GIIFGRERW 130
           +  + +A           +R         +  A+  +                +FG E  
Sbjct: 62  DWDQFLA-----------HRRQEPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETR 110

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL  E  E   ++  I  P+ P   S+N+S  V ++V+E    
Sbjct: 111 GLAPERRESFPTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQ 153


>gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 248

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 12/173 (6%)

Query: 1   MTPYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           ++   P L  + K P+I+ L       N G ++R      +  + L +      +  A  
Sbjct: 86  ISDIIPTLYEAGKTPLIVALDGVTDIRNFGAISRTCECAGVDAILLPSYCSATINADAVK 145

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +SA A   +   R   NL +AI  L     T          ++A  E A +         
Sbjct: 146 TSAGALHYLPVCRT-DNLCQAIKFLKNSGFT----------IIALSEKANIAYTDQDYSS 194

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              ++ G E  G+++E ++L ++ +  PV     SLN+S A  ++++E +++ 
Sbjct: 195 PTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGIVIYEAVKSR 247


>gi|87120919|ref|ZP_01076811.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121]
 gi|86163757|gb|EAQ65030.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121]
          Length = 157

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 19/169 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G V R   N    +L L+ P      EK    +      +  V+   +
Sbjct: 4   IVLYQPEIPPNTGNVIRLCANTG-YKLHLIEPLGFDLDEKKVRRAGLDYHELARVKRHKD 62

Query: 77  LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +   ++  +YA T +          P EA    N+         ++FG E  GL  
Sbjct: 63  WQAFVDSQEIGKVYALTTKGSK------VPSEAKFEAND--------VLVFGPETRGLPI 108

Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           E  E   +   +  P+ P   SLN+S  V +MV+E       +     +
Sbjct: 109 EFIEALPAEQRLRLPMQPNSRSLNLSNTVAIMVYESWRQLDYAMPLEAE 157


>gi|332084789|gb|EGI89972.1| spoU rRNA Methylase family protein [Shigella boydii 5216-82]
          Length = 160

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++  S     E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|269962479|ref|ZP_06176828.1| rRNA methyltransferase [Vibrio harveyi 1DA3]
 gi|269832775|gb|EEZ86885.1| rRNA methyltransferase [Vibrio harveyi 1DA3]
          Length = 159

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  +         +      TT    +              ++ +   G    ++FG E
Sbjct: 63  YQAFLEYLEKEKQGNYRLFACTTKTTGH-------------HVDAKYQEGD--VLMFGPE 107

Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL  + I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 108 TRGLPADVIDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
 gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
          Length = 180

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 10/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      ++IL + +   NIG V R    F + ++ L       P+++   ++  A   +
Sbjct: 19  KAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATDSV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGR 127
               V + L  A+  L        + +  +   +   E + +LN+   +G Q   IIFG 
Sbjct: 79  AWEYVENTL-SAVEKL--------KEQGVYIISIEQAENSTMLNDFQPNGKQKYAIIFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  G+  E ++ S+ +I  P      SLNIS +  + +WE   
Sbjct: 130 EVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172


>gi|258620436|ref|ZP_05715474.1| rRNA methyltransferase [Vibrio mimicus VM573]
 gi|258587315|gb|EEW12026.1| rRNA methyltransferase [Vibrio mimicus VM573]
          Length = 158

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               +  L        R R  F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFVEYLQ-------RERGTFRLFACTTKTTQHHVDAKFQQGD--VLMFGPETRGLPAE 113

Query: 136 EIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 114 LITSLPTEQRIRIPMMPEARSLNLSNAVAIIAFEAWRQ 151


>gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 272

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 17/176 (9%)

Query: 4   YAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60
             P L +   G   +++L D     N+G + R+     +  + L  PR   P   +A   
Sbjct: 106 ALPPLDDVLAGARTIVVLEDLVDHTNVGAIFRSAAGLGVDAIVL-APRCADPLYRRAVKV 164

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFS 117
           S  A   +   R    L +    L      T R        L P E ++ L      +  
Sbjct: 165 SMGAVFTLPHTR----LDDWYGGLD-----TLRAAGFHLMALTPGEGSLPLRDAMAALAP 215

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
           G  VG++ G E  GL++  +  + A +  P+      SLN++ A  +  +E    +
Sbjct: 216 GDRVGLLLGTEGDGLSSRWLERATARVHIPMADRDVDSLNVTAAAAIACYELTRAT 271


>gi|210613769|ref|ZP_03289883.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
 gi|210150978|gb|EEA81986.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
          Length = 164

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 26/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R     N T+L L+ P     +EKA   +       D + V   
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKAIKRA--GMDYWDDLDVTTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +  E         ATT                A  +   +    +  I+FG+E  G
Sbjct: 61  IDFQDFMEKNPGAKIYMATT---------------KAPNVYTDVNYEPDCYIMFGKESAG 105

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  EEI + +    I  P+     SLN+  +V ++++E +  
Sbjct: 106 IP-EEILIHHKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|295098731|emb|CBK87821.1| rRNA methylase, putative, group 2 [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 157

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D    +  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +    +  A     +      L  K            G    ++FG E  GL    
Sbjct: 54  FTAVVRHHDYA-AFLGSEKPQRMFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPATI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|229830204|ref|ZP_04456273.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
           14600]
 gi|229791502|gb|EEP27616.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
           14600]
          Length = 169

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 41/192 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           IIL +P++  N G + R       T L L+ P     ++K  + +           VR +
Sbjct: 5   IILHEPEIPANTGNIGRTCVAIGAT-LHLIEPLGFVINDKNLARA--GMDYWKQLDVRTY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + ++  A   D     ATT                   +   +  G +  I+FG+E  G
Sbjct: 62  LDWEDFCAKNPDARIWMATT---------------KGRHVYSDVSYGPDDYIMFGKESAG 106

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           +  E +          I  P+     SLN+S +V ++ +E +  +               
Sbjct: 107 IPEEILIRQPERC---IRIPMQGEIRSLNLSNSVAIVAYEALRQNHFDKMT--------- 154

Query: 188 TKGELLSFLDYL 199
           TKG+L     + 
Sbjct: 155 TKGQLHRL--HW 164


>gi|217964965|ref|YP_002350643.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           HCC23]
 gi|290893505|ref|ZP_06556489.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|217334235|gb|ACK40029.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           HCC23]
 gi|290557006|gb|EFD90536.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|307570475|emb|CAR83654.1| RNA methyltransferase, TrmH family [Listeria monocytogenes L99]
          Length = 169

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 33/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E         F Y T        + V +         +     ++   +FG+E  
Sbjct: 61  YDSLDEFFKKNEGGEFYYIT-----KFGRHVYS-------DIDYSDPNKDYFFVFGKETT 108

Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL       NEE       +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151


>gi|46907168|ref|YP_013557.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092144|ref|ZP_00229937.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 4b H7858]
 gi|226223554|ref|YP_002757661.1| CspR protein, rRNA methylase homolog [Listeria monocytogenes
           Clip81459]
 gi|254823794|ref|ZP_05228795.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254852429|ref|ZP_05241777.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254931319|ref|ZP_05264678.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|255521487|ref|ZP_05388724.1| hypothetical protein LmonocFSL_09725 [Listeria monocytogenes FSL
           J1-175]
 gi|300764145|ref|ZP_07074140.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           FSL N1-017]
 gi|88979161|sp|Q721N0|TRML_LISMF RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase LMOf2365_0956
 gi|46880435|gb|AAT03734.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019584|gb|EAL10324.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 4b H7858]
 gi|225876016|emb|CAS04722.1| Putative CspR protein, rRNA methylase homolog [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605737|gb|EEW18345.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|293582869|gb|EFF94901.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293593016|gb|EFG00777.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|300515135|gb|EFK42187.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           FSL N1-017]
 gi|328466957|gb|EGF38060.1| hypothetical protein LM1816_13012 [Listeria monocytogenes 1816]
 gi|328475409|gb|EGF46178.1| hypothetical protein LM220_04151 [Listeria monocytogenes 220]
 gi|332311343|gb|EGJ24438.1| hypothetical protein LMOSA_18260 [Listeria monocytogenes str. Scott
           A]
          Length = 169

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 33/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E         F Y T        + V +         +     ++   +FG+E  
Sbjct: 61  YDSLDEFFEKNEGGEFYYIT-----KFGRHVYS-------DIDYSDPNKDYFFVFGKETT 108

Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL       NEE       +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLPDALLQKNEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151


>gi|257066256|ref|YP_003152512.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
 gi|256798136|gb|ACV28791.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
          Length = 152

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L+ P+   N+G + R       ++L L+ P     S++    +       + V   + 
Sbjct: 4   IVLISPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRA--GIDYWEHVDLVIH 60

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L+E    + D  +    T   +   K      E    L            IFGRE+ G
Sbjct: 61  DSLEEFMDYVKDKRYFLIETGTQK---KYSDVNFEDGDFL------------IFGREKEG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
           + ++ +      II+ P+      SLN++ +V ++++E +  
Sbjct: 106 IPDDLLNENKEKIITIPMTKKIDRSLNLANSVSIVLYEALRQ 147


>gi|184200521|ref|YP_001854728.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183580751|dbj|BAG29222.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 154

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73
            +   P++  N G   R        +L LV P            +    +   V+D    
Sbjct: 4   FVFHTPEIPGNTGNAIRLAACTG-ARLHLVEPLGFNFDHANLRRAGLDYHDLAVMDVHPT 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L +A+ D   ++A T  + ++ +          VL            +FGRE  GL 
Sbjct: 63  VDALWDALGD-ARVFAFT--SHSSTRHTDVAYRDGDVL------------LFGRESTGLP 107

Query: 134 NEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +     +  +  P+ P   SLN++ +  + ++E    
Sbjct: 108 EKVLTDEHVHDRVRIPMLPGRRSLNLANSASIALYEAWRQ 147


>gi|115352957|ref|YP_774796.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282945|gb|ABI88462.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           AMMD]
          Length = 170

 Score = 73.2 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           +ILV P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 18  VILVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAEMRVHR 75

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 76  DWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDW---------------FVFGSETR 120

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  + +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 121 GLPADVLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 164


>gi|217966578|ref|YP_002352084.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
 gi|217335677|gb|ACK41470.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
          Length = 153

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74
           ++L++PQ+  N G + R     N ++L LV  + G+         A  D    +D   V+
Sbjct: 7   VVLIEPQIPYNTGNIGRLCVATN-SKLHLVG-KIGFSLNDKYLKRAGLDYWSFLDY-EVY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N +E +             RN     +  +  A  L   +   +   +IFG E +G+ +
Sbjct: 64  KNFEEFVE------------RNKNGRFIFVESPAFKLYTEVSYQEGDYLIFGSEDYGIPS 111

Query: 135 EEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E I         ++ P+     SLN+S +V ++V+E +  
Sbjct: 112 EIIEK--YWENSVTIPMFGPVRSLNLSSSVAVVVYEALRQ 149


>gi|156972520|ref|YP_001443427.1| RNA methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|156524114|gb|ABU69200.1| hypothetical protein VIBHAR_00152 [Vibrio harveyi ATCC BAA-1116]
          Length = 159

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  +         +      TT    +              ++ +   G    ++FG E
Sbjct: 63  YQAFLEYLEKEKQGNYRLFACTTKTTGH-------------HVDAKYQEGD--VLMFGPE 107

Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL  + I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 108 TRGLPADVIDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
           carboxidivorans P7]
 gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
           carboxidivorans P7]
          Length = 155

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 29/171 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCV----IDS 70
           I+L  P++ +N G +AR      LT   L L+ P      EK    +   D      ++ 
Sbjct: 5   IVLFQPEIPQNTGNIARTCV---LTNCKLHLIKPLGFSLDEKHLKRA-GLDYWKYLDLEV 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              +  L+E   D  F ++TT  + +NF   +  KE                I+FGRE  
Sbjct: 61  YESYEELREKYKDSTFYFSTT--HGDNFYHEVEFKE-------------GDFIVFGRESC 105

Query: 131 GLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL  + +  S+    I  P+ N    SLN+S  V ++ +E +      + K
Sbjct: 106 GLP-DSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEALRQMDFPTMK 155


>gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
 gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
          Length = 159

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 29/171 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCV----IDS 70
           I+L  P++ +N G +AR      LT   L L+ P      EK    +   D      ++ 
Sbjct: 9   IVLFQPEIPQNTGNIARTCV---LTNCKLHLIKPLGFSLDEKHLKRA-GLDYWKYLDLEV 64

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              +  L+E   D  F ++TT  + +NF   +  KE                I+FGRE  
Sbjct: 65  YESYEELREKYKDSTFYFSTT--HGDNFYHEVEFKE-------------GDFIVFGRESC 109

Query: 131 GLTNEEIALSN--AIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL  + +  S+    I  P+ N    SLN+S  V ++ +E +      + K
Sbjct: 110 GLP-DSVRESDPKRCIRVPMINTTTRSLNLSNTVAIVAYEALRQMDFPTMK 159


>gi|253582260|ref|ZP_04859483.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835799|gb|EES64337.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 152

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 24/168 (14%)

Query: 17  IILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L+ P++  N G + R   + N   T L L+ P      EK    +      +  ++++
Sbjct: 3   IVLLYPEIPYNTGNIGRSSVLTN---TTLHLIKPLGFSLDEKQLKRAGLDYWHLVDLKIW 59

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + ++ I    D    YATT   +                   I   +N  ++FG E  G
Sbjct: 60  ESYEDFINGNPDAVIYYATTKTKQRYT---------------DIKFKKNDFVMFGPESRG 104

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +  E +   ++  I+ P+  +  SLN+S +  ++++E +  +  + +K
Sbjct: 105 IPEEILNKNADHCITIPMIDMGRSLNLSNSAAIILYEALRQTDFNFDK 152


>gi|327474543|gb|EGF19948.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK408]
          Length = 184

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPVDDRKMKRA--GLDYWDKLDITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 79  ESLEDFMEQMD------GRLYLISK-----FAEKVYSEENFAAEGSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|418440|sp|P32813|TRML_BACST RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase in gldA
           3'region; AltName: Full=ORF3
 gi|142979|gb|AAA22478.1| ORF3 is homologous to an ORF downstream of the spoT gene of E.coli;
           ORF3 [Geobacillus stearothermophilus]
          Length = 157

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P++  N G +AR     N T L L+ P      +K    +       +  ++  +
Sbjct: 5   VVLFQPEIPANTGNIARTCAATN-TALHLIRPLGFSTDDKMLRRA--GLDYWEFVNIHYY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L        +  F Y T        K      + +    E       +  IFGRE  G
Sbjct: 62  DSLDHFFQQNQNGDFYYIT-----KFGKRYYTSYDFSDPSKE-------IFFIFGRETTG 109

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E +A + +  +  P+     +LN+S    ++V+E +   
Sbjct: 110 LPKELLAENEDRCLRIPMTENVRALNLSNTAAILVYEALRQQ 151


>gi|297624314|ref|YP_003705748.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
           17093]
 gi|297165494|gb|ADI15205.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
           17093]
          Length = 221

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 23/173 (13%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +L +      N+  + R      +  +  +NP  G P+    S+SA+    +   RV  +
Sbjct: 23  VLAENVHKPHNLSAMLRTCDAVGIGVVHALNPTGGVPTFNETSASAHKWVEL---RVHGS 79

Query: 77  LKEA---IADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L EA   +  +  + A  + R  +  +                   +   ++FG E+ G+
Sbjct: 80  LAEARAALGGVQLLAAHFSGRALDYREVDYT---------------RPTCVLFGNEKHGV 124

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           + E    ++A I  P+  +  SLN+S A  ++++E     + +   +  + + 
Sbjct: 125 SREAADAADAHIVIPMLGMVQSLNVSVAAAVILFEAQRQRLQAGLYDAPQLSE 177


>gi|257867865|ref|ZP_05647518.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257874194|ref|ZP_05653847.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
 gi|257801948|gb|EEV30851.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257808358|gb|EEV37180.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
          Length = 167

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +PQ+  N G +AR     N T L L+ P      +K    +          ++   
Sbjct: 4   IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRA--GLDYWHDVNITYH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGL 132
            +L    A + F+ A         + +    + A  +   +   +  +   IFG+E  GL
Sbjct: 61  KDLA---AFMDFLGA---------RPLYLISKFANRVYSDVDYTADDDQFFIFGKETTGL 108

Query: 133 TNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
               +   +   +  P+N     SLN+S    L+++E +   
Sbjct: 109 PESFMREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQ 150


>gi|90416184|ref|ZP_01224116.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
 gi|90331909|gb|EAS47123.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
          Length = 154

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N    +L L+ P      +K    +        S++V ++
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGF-RLHLIEPLGFDLDDKKLRRAGLDYREFQSLKVHAS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
           L EA            R     K + A      V        +   ++FG E  GL  + 
Sbjct: 63  L-EAY-----------RQSQQPKKIYALSTKGTVCYSSARFEEGDALLFGPETRGLPADV 110

Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   +  ++  P+     SLN+S  V ++V+E    
Sbjct: 111 RDGLGTEQVLRLPMQKESRSLNLSNTVSIIVYEAWRQ 147


>gi|62184725|ref|YP_219510.1| putative rRNA methylase [Chlamydophila abortus S26/3]
 gi|62147792|emb|CAH63538.1| putative rRNA methylase [Chlamydophila abortus S26/3]
          Length = 156

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 22/165 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L  P + +N G + R        +L LV P      +K    +       D V   V 
Sbjct: 3   VVLYHPDIPQNTGNIGRTCIALG-AELILVRPLGFSLLDKFVKRA--GMDYWDKVNLSVV 59

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L E +  +    I+  + +    +  V  P +                 +FG E  GL
Sbjct: 60  DSLDEVLFGVDEDKIFCLSTKGAQYYGDVALPMDG--------------VYVFGSESKGL 105

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             E +    N     P+ P   SLN++  V ++++E +  +  S+
Sbjct: 106 PEEVLKKYYNHTYYLPMQPGIRSLNLATTVGVVLFEAVRQNNQST 150


>gi|255544240|ref|XP_002513182.1| 23S rRNA methyltransferase, putative [Ricinus communis]
 gi|223547680|gb|EEF49173.1| 23S rRNA methyltransferase, putative [Ricinus communis]
          Length = 234

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 58/176 (32%), Gaps = 20/176 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++LV PQ+  N G +AR      +  L LV P            +           V+V 
Sbjct: 55  VVLVSPQIPGNTGCIARTCAASAVG-LHLVGPLGFQVDSTKLKRA--GLDYWPYVVVKVH 111

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  E   D         R +   K +LA  +     +      +   +IFG E  GL  
Sbjct: 112 ESWTE-FQDYF-------RQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSETSGLPP 163

Query: 135 EEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           E +            I  P+   +   LN+S +V + ++E          K   E 
Sbjct: 164 EALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSES 219


>gi|330505488|ref|YP_004382357.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328919774|gb|AEB60605.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 153

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N    QL L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGC-QLHLIEPLGFELDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           S+L+   EA+        TT  ++   +    P +                 +FG E  G
Sbjct: 61  SDLQSCLEALGHPRLFAFTTKGSQPFHEIAYQPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  EE+  +      +  P+     SLN+S  V + V+E    
Sbjct: 106 LP-EEVRNALPPQQRVRLPMRAGCRSLNLSNTVAVTVYEAWRQ 147


>gi|325662860|ref|ZP_08151429.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086576|ref|ZP_08335654.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470912|gb|EGC74141.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410409|gb|EGG89841.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 165

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R     N T+L L+ P     +EKA   +       D + V   
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKAIKRA--GMDYWDQLDVTTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +++  E         ATT                A  +   +    +  I+FG+E  G
Sbjct: 61  IDYNDFLEKNPGAKIYMATT---------------KAPNVYTDVKYEPDCYIMFGKESAG 105

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +   +    I  P+     SLN+  +V ++++E +  
Sbjct: 106 IPEEILVH-HKEDSIRIPMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|293364757|ref|ZP_06611474.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307703003|ref|ZP_07639950.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|331265674|ref|YP_004325304.1| RNA methyltransferase, putative rRNA methylase [Streptococcus
           oralis Uo5]
 gi|291316207|gb|EFE56643.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307623396|gb|EFO02386.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|326682346|emb|CBY99963.1| RNA methyltransferase, putative rRNA methylase [Streptococcus
           oralis Uo5]
          Length = 167

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 67/161 (41%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ ++ +                +++     +     + S ++   +FGRE  GL  
Sbjct: 62  DSLEDFMSQM-----------KGKLYLISKFAEKVYSEANLASSEDHYFLFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 248

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 22/174 (12%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L      P++ +L       N+G   R      +    +V PRD     +  AR  ++
Sbjct: 90  PNLVGRVASPLLLVLDGVTDPHNLGACLRTADAAGV-DAVIV-PRDRAAGLTPVARKVAS 147

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  V+  V+V +    L +      +I  T+                A     +     
Sbjct: 148 GAAEVVPFVQVTNLARTLDQLKQAGVWIIGTSG--------------DAPQTLYQADLKG 193

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            + I+ G E  G+        + +++ P+     SLN+S A  + ++E +   +
Sbjct: 194 PIAIVMGAEGQGMRRLTRERCDLLVNIPMQGSVSSLNVSVATGVCLFEVVRQRL 247


>gi|53803355|ref|YP_114950.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757116|gb|AAU91407.1| RNA methyltransferase, TrmH family, group 2 [Methylococcus
           capsulatus str. Bath]
          Length = 159

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 25/174 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           ++L +P++  N G V R   N     L L+ P      +     +       +   V   
Sbjct: 4   VVLYEPEIPPNTGNVIRLCANTG-ACLHLIEPLGFEMDDARLRRA--GLDYREWAEVARH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +     A+A    I+A T R                V +  +        +FG E  G
Sbjct: 61  RDWEGFVGAVAP-ERIFALTTR--------------GEVSHADVTYRPGDAFLFGPESRG 105

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           L    +A       I  P+ P   SLN+S AV ++ +E       +   +  E+
Sbjct: 106 LPAALLARFETGRRIRLPMRPGSRSLNLSNAVAVVCFEAWRQCGFAGAASASER 159


>gi|320179947|gb|EFW54889.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii ATCC
           9905]
          Length = 160

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++  S     E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYSAFLEAENPQRLFALTTKGTPTHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|16802975|ref|NP_464460.1| hypothetical protein lmo0935 [Listeria monocytogenes EGD-e]
 gi|47096222|ref|ZP_00233820.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224499473|ref|ZP_03667822.1| hypothetical protein LmonF1_07132 [Listeria monocytogenes Finland
           1988]
 gi|224503097|ref|ZP_03671404.1| hypothetical protein LmonFR_11343 [Listeria monocytogenes FSL
           R2-561]
 gi|254827880|ref|ZP_05232567.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254832098|ref|ZP_05236753.1| hypothetical protein Lmon1_12159 [Listeria monocytogenes 10403S]
 gi|254898892|ref|ZP_05258816.1| hypothetical protein LmonJ_03725 [Listeria monocytogenes J0161]
 gi|254911620|ref|ZP_05261632.1| RNA methyltransferase [Listeria monocytogenes J2818]
 gi|254935946|ref|ZP_05267643.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|255027352|ref|ZP_05299338.1| hypothetical protein LmonocytFSL_15203 [Listeria monocytogenes FSL
           J2-003]
 gi|16410337|emb|CAC99013.1| lmo0935 [Listeria monocytogenes EGD-e]
 gi|47015367|gb|EAL06302.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258600261|gb|EEW13586.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258608534|gb|EEW21142.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|293589567|gb|EFF97901.1| RNA methyltransferase [Listeria monocytogenes J2818]
          Length = 169

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 33/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E         F Y T        + V +         +   + ++   +FG+E  
Sbjct: 61  YDSLDEFFEKNEGGEFYYIT-----KFGRHVYS-------DIDYSDTNKDYFFVFGKETT 108

Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL       NEE       +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151


>gi|149005602|ref|ZP_01829341.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147762542|gb|EDK69502.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP18-BS74]
          Length = 167

 Score = 72.8 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLT 133
            +L++ I            ++   K  L  K A  V +E  + + ++   +FGRE  GL 
Sbjct: 62  ESLEDVI------------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP 109

Query: 134 NEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
            E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 110 -EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|303325560|ref|ZP_07356003.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
 gi|302863476|gb|EFL86407.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
          Length = 159

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 24/166 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+L +P++  N G VAR       T+L L+ P       +    +        +VR+F 
Sbjct: 2   RIVLFEPEIPPNTGNVARLCAATG-TELHLIEPLGFKLENRYLKRA--GLDYWPNVRLF- 57

Query: 76  NLKE--AIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +  A A             T+A++R+    V           +         +IFG 
Sbjct: 58  TWPDWRAFAQRPGRPATERWVMTSAKSRHGSAPV-----------QHFAFQPEDSLIFGP 106

Query: 128 ERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
           E  GL  E +  S   +  P+      SLN+S +  ++++  +  S
Sbjct: 107 ETRGLPPEMLDASPHHVRIPMREGGVRSLNLSTSAGIVLYMALAAS 152


>gi|24376005|ref|NP_720048.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24351008|gb|AAN57492.1|AE015885_5 RNA methyltransferase, TrmH family, group 2 [Shewanella oneidensis
           MR-1]
          Length = 154

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I L +P++  N G + R   N   +QL L+ P  G+  E+ +   A  D   + +V    
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPL-GFDFEEKKLRRAGLDYADLTNVTRHK 61

Query: 76  NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           N      A+A    +  TT  +R +                 +   ++  ++FG E  GL
Sbjct: 62  NFDAFLKAMAGKRIMACTTKGSRPHS---------------ELSFAKDDVLLFGPETRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 107 PMSIIESIPTEQRLRIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae]
          Length = 225

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 70/173 (40%), Gaps = 13/173 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  V R      ++Q+  +       S K+ S++A        V+  + +++AI+  
Sbjct: 16  PHNISAVIRTADAVGISQIHAI---WCQNSTKSLSAAAAGSNHWVKVKTHATIEKAISTC 72

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                      +  K  +  ++        I   Q   II G+ER G++ + +AL++  I
Sbjct: 73  K-AAGMQILAAHLTKQAIDFRQ--------IDYTQPTCIILGQERTGISKQALALADHNI 123

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
             P+  +  SLN+S A  L+++E       ++  N    +  + + +     +
Sbjct: 124 HIPMMGMVQSLNVSVASALILYEAQRQRQNANMYNSLF-SQLSEEEQQEWLFE 175


>gi|265752733|ref|ZP_06088302.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|263235919|gb|EEZ21414.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
          Length = 178

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L + +   NIG V R    F +  + L       P  +   ++  A+  ++  R 
Sbjct: 24  PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEW-RY 82

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130
             N  +A+ +LH          +   +VLA ++     L +++   + +   I+ G E  
Sbjct: 83  KKNTLDAVQELH----------DQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G+  E +   +  I  P      SLN+S    ++VWE
Sbjct: 133 GVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWE 169


>gi|237711324|ref|ZP_04541805.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229454019|gb|EEO59740.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 178

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 14/157 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L + +   NIG V R    F +  + L       P  +   ++  A+  ++  R 
Sbjct: 24  PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEW-RY 82

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130
             N  +A+ +LH          +   +VLA ++     L +++   + +   I+ G E  
Sbjct: 83  KKNTLDAVQELH----------DQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G+  E +   +  I  P      SLN+S    ++VWE
Sbjct: 133 GVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWE 169


>gi|49080686|gb|AAT50047.1| PA5127 [synthetic construct]
          Length = 154

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G + R   N   + L L+ P      +K    +        SVR +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPY 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+   EA+        TT  +R                   +   +    +FG E  GL 
Sbjct: 63  LQSCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107

Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E++  +   +  +  P+     SLN+S  V + V+E    
Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147


>gi|261209252|ref|ZP_05923644.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289566001|ref|ZP_06446439.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           D344SRF]
 gi|260076798|gb|EEW64533.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289162199|gb|EFD10061.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           D344SRF]
          Length = 168

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-TPLHLIEPLGFSTDDKHLKRA--GLDYWNDVNITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           SNL+  +        T   NR     +++     +  +E    G+    +FG+E  GL  
Sbjct: 62  SNLEAFL--------TFLGNRKL--HLISKFAHKVYSDENFADGEEHFFLFGKETTGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
                NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 112 TFMRENEE-----KCLRIPMNDEHVRSLNLSNTAAMIVYESLRQQ 151


>gi|218550884|ref|YP_002384675.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ATCC
           35469]
 gi|218358425|emb|CAQ91072.1| putative rRNA methylase [Escherichia fergusonii ATCC 35469]
          Length = 157

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++  +     E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHNYAAFLKAENPQRLFALTTKGTPAHSAVSYQDSDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL++  +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLSSSILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|82779099|ref|YP_405448.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae
           Sd197]
 gi|293417071|ref|ZP_06659698.1| RNA methyltransferase [Escherichia coli B185]
 gi|309784414|ref|ZP_07679053.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
 gi|81243247|gb|ABB63957.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|291431102|gb|EFF04095.1| RNA methyltransferase [Escherichia coli B185]
 gi|308927921|gb|EFP73389.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
          Length = 157

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++  S     E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|15893988|ref|NP_347337.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum ATCC 824]
 gi|15023579|gb|AAK78677.1|AE007585_4 Predicted tRNA-methylase (SpoU class) [Clostridium acetobutylicum
           ATCC 824]
 gi|325508114|gb|ADZ19750.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum EA 2018]
          Length = 160

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 31/169 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +   I+L  P++ +N G +AR     N   ++L L+ P      EK    +         
Sbjct: 6   ENLNIVLFQPEIPQNTGNIARTCVLTN---SKLHLIKPLGFSLDEKHLRRA--GLDYWKD 60

Query: 71  VRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           + +     +  L+E   D  F ++TT                     + +   Q   IIF
Sbjct: 61  LDLSLYDSYDELREKYKDSTFYFSTT---------------HGNGFYDDVKFNQGDFIIF 105

Query: 126 GRERWGLTNEEIALS--NAIISFPVNPLFP-SLNISQAVLLMVWECMEN 171
           GRE  GL  +EI  S  +  I  P+      SLN+S  V ++ +E +  
Sbjct: 106 GRESCGLP-DEIRESDPDRCIRVPMVKTSTRSLNLSNTVAIVAYEAIRQ 153


>gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
 gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
 gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
 gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
 gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
 gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
          Length = 246

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR      +  + +        +  A  +SA A
Sbjct: 88  PFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPARNSVSVNADAMKTSAGA 147

Query: 65  DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +   R   +LKE +     +  H + AT               E       +     
Sbjct: 148 LHTLPVCREH-SLKETLQFLKNSGFHIVAAT---------------EKGDYDYTKADYTG 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|194431210|ref|ZP_03063503.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
           1012]
 gi|194420665|gb|EDX36741.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
           1012]
 gi|332084453|gb|EGI89648.1| spoU rRNA Methylase family protein [Shigella dysenteriae 155-74]
          Length = 160

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++  S     E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYSAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|319940793|ref|ZP_08015132.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
 gi|319805675|gb|EFW02456.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
          Length = 156

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 27/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV P++  N G V R   N   + L L+ P      +K    +       +    ++ 
Sbjct: 4   VVLVHPEIPPNTGNVIRLCANTGAS-LHLIRPLGFSLEDKHMKRA--GLDYWEYATLKIH 60

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRER 129
            N +  +A  H     ++A T +    F  +   P +                 IFG E 
Sbjct: 61  DNWEAFLAAEHPNPERMFAMTTKGSTVFSQLKFIPGDW---------------FIFGAEG 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL ++      +   I  P+ P   SLN+S AV + V+E     
Sbjct: 106 SGLPDDIRSAFSAQNRIRLPMRPDNRSLNLSNAVAVTVFEAWRQQ 150


>gi|88808705|ref|ZP_01124215.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. WH 7805]
 gi|88787693|gb|EAR18850.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. WH 7805]
          Length = 165

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 34/180 (18%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MT   P          + L +P++  N G +AR    F+L  L L+ P  G+  +  +  
Sbjct: 1   MTHLKPS------PLSVALFEPRIPPNTGNIARTCAAFDLP-LSLIEPL-GFSIDDRQLK 52

Query: 61  SANADCVID-SVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            A  D     ++ V ++ K    ++A    +   + R+              + L +  F
Sbjct: 53  RAGLDYWPHVNLSVHTDFKAFKTSLAKPSRVIGCSRRD-------------GVALQDFSF 99

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWEC 168
              +V ++FGRE  GL        + I++ P+             SLN+S A  +  ++ 
Sbjct: 100 EQGDV-LLFGREDTGLPEPVRDQCDDILTIPMPCSAGVDGQGGVRSLNLSVACAIACFQA 158


>gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
           18228]
 gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
           18228]
          Length = 250

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 23/158 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSN---LKEA 80
           N G +AR      +  + + +      +  A  +SA A   +   R   + +    LKE 
Sbjct: 110 NFGAIARTCECAGVDAIIIPSKNSVSVNADAIKTSAGALHTLPVCRENNLTNTIKFLKE- 168

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            +    + AT               E       +        II G E  G+  E +AL 
Sbjct: 169 -SGFKIVAAT---------------EKGDYDYTKADYQGPTCIIMGAEDTGVPYEHLALC 212

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +  I  P+     SLN+S A  ++++E ++    + E+
Sbjct: 213 DEWIKIPLFGSIESLNVSVAAGILIYEAVKQRGFAPEE 250


>gi|161505720|ref|YP_001572832.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867067|gb|ABX23690.1| hypothetical protein SARI_03896 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 218

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 19  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 74  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 177


>gi|22537728|ref|NP_688579.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76786761|ref|YP_330206.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|77409466|ref|ZP_00786159.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae COH1]
 gi|22534618|gb|AAN00452.1|AE014264_7 RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 2603V/R]
 gi|76561818|gb|ABA44402.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|77171933|gb|EAO75109.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae COH1]
          Length = 182

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+  N G +AR     N   L ++ P      +K    +       D + V  +
Sbjct: 20  IVLFEPQIPANTGNIARTCAATNAP-LHIIRPMGFPIDDKKMKRA--GLDYWDKLDVSFY 76

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E +                   +++     +  +E     Q+   +FGRE  GL  
Sbjct: 77  DGLEEFMLSCRGKV-----------HLISKFADKVYSDENYNDDQDHYFMFGREDKGLPE 125

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             +   +   +  P+N     SLN+S  V ++V+E +   
Sbjct: 126 TFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 165


>gi|324993671|gb|EGC25590.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK405]
 gi|324995017|gb|EGC26930.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK678]
 gi|325696341|gb|EGD38232.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK160]
 gi|327462940|gb|EGF09261.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1]
          Length = 184

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 79  ESLDDFMEQMD------GRLYLISK-----FAEKVYSEENFAAEGSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|299068084|emb|CBJ39298.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           CMR15]
          Length = 156

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    QL L+ P  G+P E AR   A  D     ++RV +
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-AQLHLIEPL-GFPLEDARMRRAGLDYHEYATMRVHA 61

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +  + D       ++A T R    F  +   P +                 +FG E  
Sbjct: 62  SWEAFLRDAQPNPARMFALTTRGSTPFAGLAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+ E  A    +  I  P+ P   SLN+S  V ++V+E    
Sbjct: 107 GLSEERRAGFPPSQRIRLPMRPNNRSLNLSNTVAVVVFEAWRQ 149


>gi|170719600|ref|YP_001747288.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169757603|gb|ACA70919.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           W619]
          Length = 153

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 23/166 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCA-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L   + +L    ++A T +  + F  V                      +FG E  GL
Sbjct: 61  ESLARCLENLGNPRLFAFTTKGSHPFHEV--------------AYQPGDAFLFGPESRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             E +    +   +  P+ P   SLN+S  V + V+E       + 
Sbjct: 107 PAEVLDSLPAEQRLRLPMMPGCRSLNLSNTVAVTVYEAWRQQGFAG 152


>gi|118595209|ref|ZP_01552556.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440987|gb|EAV47614.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 154

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N   + L ++ P      EK    +      + +V+V+ N
Sbjct: 4   IVLFEPEIPPNTGNIIRLCVNTK-SSLHIIKPMGFTLDEKPVRRAGLDYHDMANVKVYDN 62

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +E  A L  H  +A T ++ +++               +  +G     IFG E  GL  
Sbjct: 63  YEECYAQLKNHRHFAVTTKSDSHYHHF------------KYEAGD--VFIFGPETRGLPL 108

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +    + A I  P+     S+N+S  V ++++E    
Sbjct: 109 ERLNDKRNQANIRVPMVASNRSMNLSNTVAIVIFEAWRQ 147


>gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240355]
          Length = 261

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  ++L   Q   N+G V R+     +  + L        S K   +   A  +     
Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLRAGMGAHFL---SG 167

Query: 73  VFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++   +L+  +A     ++AT  R                 L E          +FG E 
Sbjct: 168 IYPQADLEIWLARYKGRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260


>gi|206578587|ref|YP_002236029.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
           342]
 gi|288933036|ref|YP_003437095.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
           At-22]
 gi|290511829|ref|ZP_06551197.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
 gi|206567645|gb|ACI09421.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
           342]
 gi|288887765|gb|ADC56083.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
           At-22]
 gi|289775619|gb|EFD83619.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
          Length = 157

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N   + L ++ P      +K    +        +V+  ++
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFS-LHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHAD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +A        +A+ +  F   L  K            G    ++FG E  GL    
Sbjct: 63  YAAFLA--------SAQPQRLF--ALTTKGTPAHSAVSYQDGD--FLMFGPETRGLPASI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|121634880|ref|YP_975125.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
 gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
 gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           961-5945]
 gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136]
          Length = 261

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  ++L   Q   N+G V R+     +  + L        S K   +   A  +     
Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFL---SG 167

Query: 73  VFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++   +L+  +A     ++AT  R                 L E          +FG E 
Sbjct: 168 IYPQADLEIWLASYKGRVFATALREEKQV------VLYGEDLCE------PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
           19718]
 gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
           19718]
          Length = 260

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 22/192 (11%)

Query: 6   PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             L      P ++LV    +   N+G   R    F +  + +   R    S      ++ 
Sbjct: 86  EDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHAVVVPKDRAVGLSATVHKVASG 145

Query: 64  ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A   +    V +    L+E      +I  T A               A    + +   + 
Sbjct: 146 AVDTVPFFAVTNLARTLRELKEMGLWIVGTAA--------------DAPDTLDSVTLTRP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           +  + G E  G+        + ++S P++    SLN+S +  + ++E        +   +
Sbjct: 192 LAWVLGAEDGGMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFETFRQHSQRTGSGL 251

Query: 181 KEQNTPATKGEL 192
              N PA K  +
Sbjct: 252 ---NVPAPKNAV 260


>gi|91228462|ref|ZP_01262386.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01]
 gi|262392990|ref|YP_003284844.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25]
 gi|91187997|gb|EAS74305.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01]
 gi|262336584|gb|ACY50379.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25]
          Length = 159

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62

Query: 77  LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  +         +      TT    +              ++ +  +G    ++FG E
Sbjct: 63  YQAFLEYLEKEKQGNYRLFACTTKTTGH-------------HVDAQYQAGD--VLMFGPE 107

Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL  E I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 108 TRGLPAEIIDSLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|228472059|ref|ZP_04056827.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276671|gb|EEK15384.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 178

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 11/160 (6%)

Query: 9   QNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + + K PVI+++D     N IG V R    F + ++ L       P ++   ++  A   
Sbjct: 18  KETPKIPVIVVLDNIRSLNNIGSVFRTADAFCIQKIYLCGITATPPHKEIHKTALGATES 77

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFG 126
           ++         E + D+  +   + R R      +   E A+ L       G    +IFG
Sbjct: 78  VEW--------EYVQDITTLVE-SLRQRQVEVIAIEQVEDAVSLEHFSPKKGVTYALIFG 128

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E  G+    ++L    I  P      SLNI+ +  +++W
Sbjct: 129 NEVEGVQQSVVSLCQRAIEIPQYGTKHSLNIAVSAGILLW 168


>gi|323351026|ref|ZP_08086683.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66]
 gi|322122750|gb|EFX94459.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66]
          Length = 184

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 79  ESLEDFMEQMD------GRLYLISK-----FAEKVYSEENFAAEGSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|15600320|ref|NP_253814.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|9951426|gb|AAG08512.1|AE004926_2 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
          Length = 153

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G + R   N   + L L+ P      +K    +        SVR +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPY 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+   EA+        TT  +R                   +   +    +FG E  GL 
Sbjct: 63  LQSCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107

Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E++  +   +  +  P+     SLN+S  V + V+E    
Sbjct: 108 -EDVRNALPTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147


>gi|223043587|ref|ZP_03613632.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
           SK14]
 gi|222443075|gb|EEE49175.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
           SK14]
          Length = 156

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G +AR        T L L+ P      +K    +       + V +  
Sbjct: 5   IVLFQPEIPANTGNIARTCA--GTFTHLHLIKPLGFSTDDKMLKRA--GLDYWEHVNITY 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWG 131
             +++E              +       L  K      ++  FS   +N   IFGRE  G
Sbjct: 61  HESIEEFF------------DSTKGNYYLLTKFGKQTYSDFDFSNTLENHYFIFGRETTG 108

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +      ++  +  P++    SLN+S    L+++E +   
Sbjct: 109 LPDWIKEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150


>gi|260771994|ref|ZP_05880911.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
           CIP 69.14]
 gi|260612861|gb|EEX38063.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
           CIP 69.14]
          Length = 228

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81
             N+  V R      L Q+  V     WP+E+ R+ S   A A   ++ V+  ++  EA+
Sbjct: 30  PNNVSAVIRTADAVGLHQIHAV-----WPNEQMRTLSHTSAGARNWVE-VQTHNSTLEAV 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + L        +       V    E AI     I   Q   IIFG E+ G++ + + L++
Sbjct: 84  SHL--------KETGMQILVTNLSEHAIDFRA-IDYTQPTAIIFGSEKSGISPQALQLAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
             I  P+  +  SLN+S A  L+++E       +   + ++ 
Sbjct: 135 HDIVIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYDREQS 176


>gi|257056238|ref|YP_003134070.1| putative rRNA methylase SpoU family [Saccharomonospora viridis DSM
           43017]
 gi|256586110|gb|ACU97243.1| predicted rRNA methylase SpoU family [Saccharomonospora viridis DSM
           43017]
          Length = 158

 Score = 72.4 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 21/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+   P++  N G   R   N    +L L+ P      ++    +      +  ++V  
Sbjct: 3   RIVFFHPEIPGNTGNAIRLAANTGC-ELHLIEPLGFSLEDRYLRRAGLDYHDLAHIQVHR 61

Query: 76  NLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +L    +A+  +H    TT  +R +                 +   +   ++FG E  GL
Sbjct: 62  DLDAAWQALDPVHVYAFTTQAHRRHT---------------DVDYAEGDVLLFGPESVGL 106

Query: 133 TNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +E +A       +  P+ P   SLN++    + V+E    
Sbjct: 107 PDEVLADERITDQVRLPMLPTSRSLNLTNTAAIAVYEAWRQ 147


>gi|295099743|emb|CBK88832.1| Predicted rRNA methylase (SpoU class) [Eubacterium cylindroides
           T2-87]
          Length = 173

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 75/189 (39%), Gaps = 24/189 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-VRVFS 75
           ++L +P++ +N G + R       ++L L+ P  G+  ++     +  D + D+ + +  
Sbjct: 4   VVLYEPEIPQNTGNIIRTCMATG-SRLHLIEPL-GFSLDEKHLRRSGMDYIKDADIHIHK 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N +E + +            + +  +      A    +   + ++V ++ G+E  G+  +
Sbjct: 62  NWEEFVKE---------NPSDKYYFMTRYGHKAPSEFDFSDTSKDVYLVLGKESTGVDKK 112

Query: 136 EI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            +    ++ +  P+     SLN+S    ++V+E +                 AT  +L  
Sbjct: 113 ILKDHLDSCMRLPMVASARSLNLSNCAAIIVYEVLRQQNYPG---------LATSEQLKG 163

Query: 195 FLDYLEISL 203
             D+    L
Sbjct: 164 --DHWLEDL 170


>gi|154509022|ref|ZP_02044664.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798656|gb|EDN81076.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
           17982]
          Length = 246

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + S    +++L   +   N+G + R    F    +  V       S K   SSA +   I
Sbjct: 80  EPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHI 139

Query: 69  DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V V  +  +A A +H     +  T+    +   S L  +    V++ R    Q+   +
Sbjct: 140 P-VCVVPSFADARALIHGRSAALLGTSGGAASISLSDLLVQ----VVSARSRLSQSHAWV 194

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           FG E  GL+ +E+ L + ++S P+     SLN++ A    ++
Sbjct: 195 FGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLF 236


>gi|330874202|gb|EGH08351.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967517|gb|EGH67777.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 151

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L    E I +      TT  +R    +  AP +                 +FG E  G
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKGSRPFHDASFAPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +    S+  +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSDQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|296100480|ref|YP_003610626.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054939|gb|ADF59677.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 206

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ +  A       SV+    + EA++
Sbjct: 7   PHNVSAIVRTADAVGVHEVHAV-----WPGARMRTMASTAAGSNSWVSVKTHQTIGEAVS 61

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R            A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 62  HL--------KGRGMQILATNLSAKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADQ 112

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +          P  + + L F
Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERSNSMLPEDEQQRLLF 165


>gi|114049292|ref|YP_739842.1| RNA methyltransferase [Shewanella sp. MR-7]
 gi|113890734|gb|ABI44785.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-7]
          Length = 154

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N   +QL L+ P      EK    +      + +V    N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNG-SQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKN 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+     +  TT  +R +                 +   ++  ++FG E  GL 
Sbjct: 63  FDAFLEAMTGKRIMACTTKGSRPHT---------------ELSFAKDDVLLFGPETRGLP 107

Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               E I     +   P+     SLN+S AV ++ +E    
Sbjct: 108 MPIIESIPTEQRL-RIPMAATSRSLNLSNAVAIISYEAWRQ 147


>gi|48428734|gb|AAT42383.1| putative rRNA methylase [Collimonas fungivorans Ter331]
          Length = 160

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 23/171 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++  N G + R   N    QL L+ P      +     +       D    +V 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTG-AQLHLIEPLGFPLDDSKMRRA--GLDYHDYATMQVH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKS----VLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++  + +A        + R+  ++       +    +    + +   G     +FG E  
Sbjct: 61  ADWNDFVA--------SMRDAGSYDPSRMFAMTTHGSTPFASLQFRPGDI--FVFGSETR 110

Query: 131 GLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL     E  A S  I   P+ P   SLN+S  V ++V+E    +  S   
Sbjct: 111 GLDPALRESFAPSQRI-RLPMRPDNRSLNLSNTVAVVVYEAWRQNGYSGGA 160


>gi|315186581|gb|EFU20340.1| RNA methyltransferase, TrmH family, group 2 [Spirochaeta
           thermophila DSM 6578]
          Length = 154

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 20/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++L +P++ +N G +AR         L L+ P  G+  E      A  D   +  +R+ S
Sbjct: 5   VVLHEPEIPQNTGNIARTCAATG-AVLHLIEPL-GFSLEDRYLRRAGLDYWPMVDLRLHS 62

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +    + +     ++  + R   ++ +   P E                ++FG+E  GL 
Sbjct: 63  SWDAFLEEERPSSLFLLSTRGTRSYHTCSFPDE--------------TYLVFGKETAGLP 108

Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECME 170
              +    + ++  P+     SLN+S AV ++V+E + 
Sbjct: 109 PRILEAFPDRVVRIPMRAGARSLNLSNAVAILVYEALR 146


>gi|152972456|ref|YP_001337602.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238897050|ref|YP_002921796.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040658|ref|ZP_06013896.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996841|ref|ZP_08302600.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
           92-3]
 gi|150957305|gb|ABR79335.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549378|dbj|BAH65729.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259042022|gb|EEW43055.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539252|gb|EGF65280.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
           92-3]
          Length = 157

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N   + L ++ P      +K    +        +V+  ++
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFS-LHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHAD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +A        +A+ +  F   L  K            G    ++FG E  GL    
Sbjct: 63  YAAFVA--------SAQPQRLF--ALTTKGTPAHSAVSYQDGD--FLMFGPETRGLPASI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|314934019|ref|ZP_07841384.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
           C87]
 gi|313654169|gb|EFS17926.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
           C87]
          Length = 156

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G +AR        T L L+ P      +K    +       + V +  
Sbjct: 5   IVLFQPEIPANTGNIARTCA--GTFTHLHLIKPLGFSTDDKMLKRA--GLDYWEHVNITY 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +++E                 N+  +    +      +   + +N   IFGRE  GL 
Sbjct: 61  HESIEEFFD----------STEGNYYLLTKFGKQTYSDFDFTNTIENHYFIFGRETTGLP 110

Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +      ++  +  P++    SLN+S    L+++E +   
Sbjct: 111 DWVKEKYADTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150


>gi|16131477|ref|NP_418063.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26250250|ref|NP_756290.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli CFT073]
 gi|89110405|ref|AP_004185.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. W3110]
 gi|91213120|ref|YP_543106.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UTI89]
 gi|110643850|ref|YP_671580.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 536]
 gi|117625884|ref|YP_859207.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli APEC
           O1]
 gi|170083114|ref|YP_001732434.1| rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680159|ref|YP_001745908.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           SMS-3-5]
 gi|191170469|ref|ZP_03032022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
 gi|215488886|ref|YP_002331317.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O127:H6
           str. E2348/69]
 gi|218560681|ref|YP_002393594.1| tRNA/rRNA methyltransferase YibK [Escherichia coli S88]
 gi|218691893|ref|YP_002400105.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ED1a]
 gi|218702375|ref|YP_002410004.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI39]
 gi|218707241|ref|YP_002414760.1| putative tRNA /rRNA methyltransferase YibK [Escherichia coli
           UMN026]
 gi|227883776|ref|ZP_04001581.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
 gi|237703377|ref|ZP_04533858.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|238902697|ref|YP_002928493.1| putative rRNA methylase [Escherichia coli BW2952]
 gi|254038806|ref|ZP_04872858.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|293407230|ref|ZP_06651154.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
 gi|293413043|ref|ZP_06655711.1| RNA methyltransferase [Escherichia coli B354]
 gi|298382977|ref|ZP_06992572.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
 gi|300898753|ref|ZP_07117061.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           198-1]
 gi|300939207|ref|ZP_07153888.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           21-1]
 gi|300948061|ref|ZP_07162200.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           116-1]
 gi|300954500|ref|ZP_07166949.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           175-1]
 gi|300983585|ref|ZP_07176677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           200-1]
 gi|300984991|ref|ZP_07177243.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           45-1]
 gi|301018938|ref|ZP_07183161.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           69-1]
 gi|301028365|ref|ZP_07191612.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           196-1]
 gi|301047398|ref|ZP_07194478.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           185-1]
 gi|301644272|ref|ZP_07244275.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           146-1]
 gi|306816043|ref|ZP_07450181.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
 gi|307140305|ref|ZP_07499661.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli H736]
 gi|307314306|ref|ZP_07593914.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
 gi|312968052|ref|ZP_07782263.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
 gi|331644325|ref|ZP_08345454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
 gi|331649424|ref|ZP_08350510.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
 gi|331655239|ref|ZP_08356238.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
 gi|331659929|ref|ZP_08360867.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA206]
 gi|331665234|ref|ZP_08366135.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA143]
 gi|331685271|ref|ZP_08385857.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
 gi|84028007|sp|P0AGJ8|TRML_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|84028008|sp|P0AGJ7|TRML_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|26110679|gb|AAN82864.1|AE016768_282 Hypothetical tRNA/rRNA methyltransferase yibK [Escherichia coli
           CFT073]
 gi|466744|gb|AAB18583.1| alternate gene name yibK [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1790034|gb|AAC76630.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85676436|dbj|BAE77686.1| predicted rRNA methylase [Escherichia coli str. K12 substr. W3110]
 gi|91074694|gb|ABE09575.1| hypothetical protein UTI89_C4147 [Escherichia coli UTI89]
 gi|110345442|gb|ABG71679.1| hypothetical tRNA/rRNA methyltransferase YibK [Escherichia coli
           536]
 gi|115515008|gb|ABJ03083.1| predicted rRNA methylase [Escherichia coli APEC O1]
 gi|169890949|gb|ACB04656.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170517877|gb|ACB16055.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           SMS-3-5]
 gi|190909277|gb|EDV68863.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
 gi|215266958|emb|CAS11403.1| predicted rRNA methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|218367450|emb|CAR05232.1| putative rRNA methylase [Escherichia coli S88]
 gi|218372361|emb|CAR20235.1| putative rRNA methylase [Escherichia coli IAI39]
 gi|218429457|emb|CAR10423.2| putative rRNA methylase [Escherichia coli ED1a]
 gi|218434338|emb|CAR15262.1| putative rRNA methylase [Escherichia coli UMN026]
 gi|222035317|emb|CAP78062.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Escherichia coli
           LF82]
 gi|226838771|gb|EEH70798.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|226902641|gb|EEH88900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227839054|gb|EEJ49520.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
 gi|238863084|gb|ACR65082.1| predicted rRNA methylase [Escherichia coli BW2952]
 gi|260447375|gb|ACX37797.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli DH1]
 gi|281180652|dbj|BAI56982.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|291426041|gb|EFE99075.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
 gi|291468690|gb|EFF11183.1| RNA methyltransferase [Escherichia coli B354]
 gi|294494012|gb|ADE92768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           IHE3034]
 gi|298276813|gb|EFI18331.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
 gi|299878567|gb|EFI86778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           196-1]
 gi|300300672|gb|EFJ57057.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           185-1]
 gi|300306909|gb|EFJ61429.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           200-1]
 gi|300318533|gb|EFJ68317.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           175-1]
 gi|300357606|gb|EFJ73476.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           198-1]
 gi|300399432|gb|EFJ82970.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           69-1]
 gi|300408271|gb|EFJ91809.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           45-1]
 gi|300452402|gb|EFK16022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           116-1]
 gi|300455888|gb|EFK19381.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           21-1]
 gi|301077372|gb|EFK92178.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           146-1]
 gi|305850439|gb|EFM50896.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
 gi|306906129|gb|EFN36648.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
 gi|307555708|gb|ADN48483.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|307628683|gb|ADN72987.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UM146]
 gi|309704010|emb|CBJ03356.1| putative RNA-methyltransferase [Escherichia coli ETEC H10407]
 gi|312287311|gb|EFR15220.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
 gi|312948170|gb|ADR28997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062897|gb|ADT77224.1| predicted rRNA methylase [Escherichia coli W]
 gi|315138188|dbj|BAJ45347.1| tRNA/rRNA methyltransferase YibK [Escherichia coli DH1]
 gi|315285360|gb|EFU44805.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           110-3]
 gi|315292984|gb|EFU52336.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           153-1]
 gi|315297043|gb|EFU56323.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           16-3]
 gi|315618690|gb|EFU99276.1| spoU rRNA Methylase family protein [Escherichia coli 3431]
 gi|320193884|gb|EFW68517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           WV_060327]
 gi|323189351|gb|EFZ74633.1| spoU rRNA Methylase family protein [Escherichia coli RN587/1]
 gi|323376510|gb|ADX48778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli KO11]
 gi|323949848|gb|EGB45732.1| RNA methyltransferase [Escherichia coli H252]
 gi|323954851|gb|EGB50631.1| RNA methyltransferase [Escherichia coli H263]
 gi|324008114|gb|EGB77333.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           57-2]
 gi|324012631|gb|EGB81850.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           60-1]
 gi|330909673|gb|EGH38187.1| tRNA (cytosine34-2'-O-)-methyltransferase [Escherichia coli AA86]
 gi|331036619|gb|EGI08845.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
 gi|331041922|gb|EGI14066.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
 gi|331047254|gb|EGI19332.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
 gi|331053144|gb|EGI25177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA206]
 gi|331057744|gb|EGI29730.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA143]
 gi|331077642|gb|EGI48854.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
 gi|332345577|gb|AEE58911.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 157

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++        E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|322835014|ref|YP_004215041.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
 gi|321170215|gb|ADW75914.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
          Length = 157

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++  N G + R   N    QL L+ P   GW  ++ R +        +   +  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFGWDDKRLRRA---GLDYHEFAHIKH 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +N    +            +  N + + A        +  +    N  ++FG E  GL 
Sbjct: 60  HANYDAFL------------SSENPQRLFALTTKGTPAHSAVSYQDNDFLLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 108 ASILDNLPAQQKIRIPMRAESRSMNLSNAVSVVVYEAWRQ 147


>gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 175

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 13/167 (7%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + ++K P +++L + +   N+G V R+   F +  + L       PS +   ++  A+
Sbjct: 8   EFKAASKLPLIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAE 67

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123
             +   + F+   +AI +LH             K     + A   + + + +  G    +
Sbjct: 68  DSVTW-KYFAQTTDAIDELH---------AKGTKVFAVEQVAGSTMLQNLDTEVGTRYAV 117

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + G E  G+    + L +  +  P      SLN+S A  ++VWE  +
Sbjct: 118 VLGNEVKGVQQTVVDLCDGCLEIPQFGTKHSLNVSVAAGIVVWEFAK 164


>gi|237802221|ref|ZP_04590682.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331025078|gb|EGI05134.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 151

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L    E I +      TT  +R    +   P +                 +FG E  G
Sbjct: 61  ADLATCLEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +    S+  +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSDQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|187932064|ref|YP_001892049.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712973|gb|ACD31270.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 155

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 24/158 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
             I L +P++  NIG + R   N    +L L+ P      +K    +       +    +
Sbjct: 2   ISIALYEPEIPPNIGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLK 58

Query: 73  VFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ N  E      D   I+A T + +  +  V    +                ++FG E 
Sbjct: 59  IYKNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------ILLFGPET 103

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
            GL  + + L     +  P++    SLN+S +V ++++
Sbjct: 104 RGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141


>gi|56415585|ref|YP_152660.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364512|ref|YP_002144149.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129842|gb|AAV79348.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095989|emb|CAR61576.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 157

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A         L  K  A         G    ++FG E  GL    
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTAAHSAVSYQDGDY--LMFGPETRGLPASI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|182626609|ref|ZP_02954355.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens D str. JGS1721]
 gi|177908089|gb|EDT70662.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens D str. JGS1721]
          Length = 153

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 23/160 (14%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++ +N G +AR     N   ++L ++ P      +K    +         +   
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTN---SKLHIIKPMGFVIDDKHLKRA--GLDYWSQLDLE 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  + ++ +             +   K +      A    + +   +   I+FGRE  G+
Sbjct: 60  IHESYEDFMK------------KYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGV 107

Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
             E +  ++  I  P+ N    SLN+S  V ++ +E +  
Sbjct: 108 P-ENVHNAHHGIKVPMINTTTRSLNLSNTVAIIAYEALRQ 146


>gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 257

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
               ++   ++IL   +   N+G + R         + ++  +    S     +SA A  
Sbjct: 101 AAPRNSSPLLVILQGLEDPHNVGAIIRTAEAVAADAVIMIEGKGAPISATVHKASAGA-- 158

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  +RV   +K  +  L  +       R    S++A    A   +  I   +   ++ G
Sbjct: 159 -LSHMRVCK-VKSVVKALDLL-------RERGFSIVAADMEAEHNHTDIDWKRPTVLVMG 209

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            E  GL +E     + I+  P+     SLN+S A  +M++E M   +
Sbjct: 210 AEGSGLGSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLYEAMRQRL 256


>gi|15610502|ref|NP_217883.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Rv]
 gi|15842962|ref|NP_337999.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31794549|ref|NP_857042.1| tRNA/rRNA methylase SpoU [Mycobacterium bovis AF2122/97]
 gi|121639293|ref|YP_979517.1| putative tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663229|ref|YP_001284752.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra]
 gi|148824575|ref|YP_001289329.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11]
 gi|167967350|ref|ZP_02549627.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis H37Ra]
 gi|215428869|ref|ZP_03426788.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|215432336|ref|ZP_03430255.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|218755145|ref|ZP_03533941.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|219559441|ref|ZP_03538517.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|224991790|ref|YP_002646479.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800413|ref|YP_003033414.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435]
 gi|254233970|ref|ZP_04927295.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C]
 gi|254365983|ref|ZP_04982028.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem]
 gi|254552468|ref|ZP_05142915.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260202561|ref|ZP_05770052.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|260206730|ref|ZP_05774221.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289444978|ref|ZP_06434722.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|289571603|ref|ZP_06451830.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|289576099|ref|ZP_06456326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289752083|ref|ZP_06511461.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|289755496|ref|ZP_06514874.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|289763549|ref|ZP_06522927.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|297636026|ref|ZP_06953806.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207]
 gi|297733024|ref|ZP_06962142.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN R506]
 gi|306777707|ref|ZP_07416044.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001]
 gi|306782432|ref|ZP_07420769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002]
 gi|306786251|ref|ZP_07424573.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003]
 gi|306790621|ref|ZP_07428943.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004]
 gi|306795148|ref|ZP_07433450.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005]
 gi|306799339|ref|ZP_07437641.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006]
 gi|306805185|ref|ZP_07441853.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008]
 gi|306809372|ref|ZP_07446040.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007]
 gi|306969477|ref|ZP_07482138.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009]
 gi|306973823|ref|ZP_07486484.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010]
 gi|307081535|ref|ZP_07490705.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011]
 gi|307086140|ref|ZP_07495253.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012]
 gi|313660356|ref|ZP_07817236.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN V2475]
 gi|2661644|emb|CAA15751.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13883300|gb|AAK47813.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31620145|emb|CAD95558.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494941|emb|CAL73427.1| Probable tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124599499|gb|EAY58603.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C]
 gi|134151496|gb|EBA43541.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem]
 gi|148507381|gb|ABQ75190.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra]
 gi|148723102|gb|ABR07727.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11]
 gi|224774905|dbj|BAH27711.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321916|gb|ACT26519.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435]
 gi|289417897|gb|EFD15137.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|289540530|gb|EFD45108.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289545357|gb|EFD49005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|289692670|gb|EFD60099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|289696083|gb|EFD63512.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|289711055|gb|EFD75071.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|308213977|gb|EFO73376.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001]
 gi|308324923|gb|EFP13774.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002]
 gi|308329154|gb|EFP18005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003]
 gi|308332986|gb|EFP21837.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004]
 gi|308336602|gb|EFP25453.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005]
 gi|308340475|gb|EFP29326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006]
 gi|308344345|gb|EFP33196.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007]
 gi|308348278|gb|EFP37129.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008]
 gi|308353003|gb|EFP41854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009]
 gi|308356844|gb|EFP45695.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010]
 gi|308360792|gb|EFP49643.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011]
 gi|308364407|gb|EFP53258.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012]
 gi|323717987|gb|EGB27174.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CDC1551A]
 gi|328460146|gb|AEB05569.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207]
          Length = 154

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
            V P++  N G   R        +L LV P     SE     +      + SV V ++L 
Sbjct: 6   FVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64

Query: 79  ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              EA++    ++A TA               A  L   +       ++FG E  GL  +
Sbjct: 65  HAWEALSP-ARVFAFTA--------------QATTLFTNVGYRAGDVLMFGPEPTGL--D 107

Query: 136 EIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  L++  I+     P+     SLN+S A  + V+E       +  
Sbjct: 108 EATLADTHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 153


>gi|212692475|ref|ZP_03300603.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
 gi|237724320|ref|ZP_04554801.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
 gi|212664950|gb|EEB25522.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
 gi|229437189|gb|EEO47266.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 178

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 14/157 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L + +   NIG V R    F +  + L       P  +   ++  A+  ++  R 
Sbjct: 24  PLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEW-RY 82

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIF--SGQNVGIIFGRERW 130
             N  +A+ +LH          +    VLA ++     L +++   + +   I+ G E  
Sbjct: 83  KKNTLDAVQELH----------DQGFIVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVK 132

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G+  E +   +  I  P      SLN+S    ++VWE
Sbjct: 133 GVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWE 169


>gi|153840063|ref|ZP_01992730.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ3810]
 gi|260903305|ref|ZP_05911700.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ4037]
 gi|149746359|gb|EDM57408.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ3810]
 gi|308109535|gb|EFO47075.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ4037]
 gi|328472240|gb|EGF43110.1| rRNA methylase [Vibrio parahaemolyticus 10329]
          Length = 159

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +  +  L        +  N        K     ++ +  +G    ++FG E  GL  E 
Sbjct: 63  YQAFLEYLDK-----EKQGNYRLFACTTKTTGHHVDAQYQAGD--VLMFGPETRGLPAEI 115

Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 116 IEGLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|330961879|gb|EGH62139.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 151

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L    E I +      TT  +R    +   P +                 +FG E  G
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +    S+  +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLNSDHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
           12056]
 gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
           12056]
          Length = 246

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR      +  + +        +  A  +SA A
Sbjct: 88  PFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAGA 147

Query: 65  DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +   R   NLK+ +     +  H + AT               E       +     
Sbjct: 148 LHTLPVCR-EQNLKDTLQYLKNSGFHIVAAT---------------EKGDYDYTKADYTG 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
 gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
 gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 246

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR      +  + +        +  A  +SA A
Sbjct: 88  PFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAGA 147

Query: 65  DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +   R   NLK+ +     +  H + AT               E       +     
Sbjct: 148 LHTLPVCR-EQNLKDTLQYLKNSGFHIVAAT---------------EKGDYDYTKADYTG 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
           43183]
 gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
           43183]
          Length = 246

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR      +  + +        +  A  +SA A
Sbjct: 88  PFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVTVNADAVKTSAGA 147

Query: 65  DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +   R   NLK+ +     +  H + AT               E       +     
Sbjct: 148 LHTLPVCR-EQNLKDTLQFLKSSGFHIVAAT---------------EKGDYDYTKADYTG 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|192362257|ref|YP_001982863.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190688422|gb|ACE86100.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio japonicus
           Ueda107]
          Length = 154

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      EK+ + +         VR+ ++
Sbjct: 4   IVLFEPEIPPNTGNIIRLAANTGC-QLHLIEPLGFNLDEKSVTRAGMDYAETQDVRIHAS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE- 135
            +      HF+       +     + A        +          ++FG E  GL  + 
Sbjct: 63  WE------HFLV------QEQPTRLFALSTKGSQCHSDAQFAAGDYLLFGPESRGLPADI 110

Query: 136 -EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E   +N ++  P+     S+N+S AV +MV+E    
Sbjct: 111 RESLPANQVLRIPMAANSRSMNLSNAVAVMVYEAWRQ 147


>gi|24114875|ref|NP_709385.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a
           str. 301]
 gi|30065118|ref|NP_839289.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a
           str. 2457T]
 gi|74314157|ref|YP_312576.1| putative tRNA/rRNA methyltransferase YibK [Shigella sonnei Ss046]
 gi|82545974|ref|YP_409921.1| tRNA/rRNA methyltransferase YibK [Shigella boydii Sb227]
 gi|110807718|ref|YP_691238.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 5 str.
           8401]
 gi|187730115|ref|YP_001882306.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii CDC
           3083-94]
 gi|300907650|ref|ZP_07125278.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           84-1]
 gi|301303842|ref|ZP_07209961.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           124-1]
 gi|24054114|gb|AAN45092.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043379|gb|AAP19100.1| hypothetical protein S4123 [Shigella flexneri 2a str. 2457T]
 gi|73857634|gb|AAZ90341.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81247385|gb|ABB68093.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|110617266|gb|ABF05933.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|187427107|gb|ACD06381.1| RNA methyltransferase, TrmH family, group 2 [Shigella boydii CDC
           3083-94]
 gi|281602968|gb|ADA75952.1| putative tRNA/rRNA methyltransferase yibK [Shigella flexneri
           2002017]
 gi|300400586|gb|EFJ84124.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           84-1]
 gi|300840805|gb|EFK68565.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           124-1]
 gi|313647521|gb|EFS11971.1| spoU rRNA Methylase family protein [Shigella flexneri 2a str.
           2457T]
 gi|315253995|gb|EFU33963.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           85-1]
 gi|320176330|gb|EFW51390.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae CDC
           74-1112]
 gi|320186849|gb|EFW61569.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri CDC
           796-83]
 gi|323166910|gb|EFZ52649.1| spoU rRNA Methylase family protein [Shigella sonnei 53G]
 gi|332749942|gb|EGJ80354.1| spoU rRNA Methylase family protein [Shigella flexneri K-671]
 gi|332750102|gb|EGJ80513.1| spoU rRNA Methylase family protein [Shigella flexneri 4343-70]
 gi|332751237|gb|EGJ81640.1| spoU rRNA Methylase family protein [Shigella flexneri 2747-71]
 gi|332764194|gb|EGJ94431.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
 gi|332996168|gb|EGK15795.1| spoU rRNA Methylase family protein [Shigella flexneri VA-6]
 gi|332997309|gb|EGK16925.1| spoU rRNA Methylase family protein [Shigella flexneri K-218]
 gi|332997816|gb|EGK17427.1| spoU rRNA Methylase family protein [Shigella flexneri K-272]
 gi|333012857|gb|EGK32234.1| spoU rRNA Methylase family protein [Shigella flexneri K-304]
 gi|333013348|gb|EGK32720.1| spoU rRNA Methylase family protein [Shigella flexneri K-227]
          Length = 157

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++        E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 223

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 25/185 (13%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP        + +  +  + +L++      N+  + R      + +   VNP  G P+ 
Sbjct: 1   MTPERYRKLRAVLDKRQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPT- 59

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVL 111
              + ++        +RV  ++  A+  L      +YA    +       +         
Sbjct: 60  --YNETSGGSEKWVYLRVHPDIATAVQHLKERGFLVYAAHLSDEAVDYRAVD-------- 109

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                  + V ++ G E+WG++ E  AL++  I  P+  +  SLN+S A  ++++E    
Sbjct: 110 -----YTRPVAVLLGAEKWGVSPEAAALADRHIVIPMMGMVQSLNVSVAAAVILFEAQRQ 164

Query: 172 SIVSS 176
              + 
Sbjct: 165 RQAAG 169


>gi|325971621|ref|YP_004247812.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324026859|gb|ADY13618.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 166

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++ +N G +AR       T L LV+P     SEK    +      + ++  ++N
Sbjct: 5   IVLFEPEIPQNTGNIARTCAAVGAT-LHLVHPLGFSLSEKHLRRAGLDYWPLLTLCEYAN 63

Query: 77  LKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + E     +  +  + TT + ++++  +  P+E                ++FG+E  G+ 
Sbjct: 64  VDEFFQKKSGENLYFFTT-KAKHSYTELTYPEE--------------TYLVFGKESAGIP 108

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              +       +  P+     SLN+S +V +  +E +  +  S 
Sbjct: 109 ESILVEHQKTCVRIPMRSQARSLNLSNSVAIATYEYLRQAQFSD 152


>gi|238750818|ref|ZP_04612316.1| Methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238710962|gb|EEQ03182.1| Methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 172

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 6/160 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        +++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHD 62

Query: 77  LKEAIADLHFIYATTARNRNNF---KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +  +   +   A +  N +       + A        +  +    N  ++FG E  GL 
Sbjct: 63  YQAFLDSENLDGAQSVSNESTGTESARLFALTTKGTPAHSAVSYQINDYLLFGPETRGLP 122

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 123 PNVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 162


>gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp.
           HTCC2999]
          Length = 247

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 21/178 (11%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59
           T     +  SAK  +++L       N+G V R+     +    +V P+D     +   R 
Sbjct: 86  TDLDTIISQSAKPFLLVLDGVTDPHNLGAVLRSADAAGV-DAVIV-PKDKSASLNATVRK 143

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +  A  VI  ++V +    L E      ++  T    R +                   
Sbjct: 144 VACGAADVIPLIQVTNLARTLSELQEQQIWVVGTAGEARQSVFDCDM------------- 190

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               V ++ G E  G+        + +I  P+     SLN+S A  + ++E +     
Sbjct: 191 -AGPVALVMGAEGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLYEIVRQRGA 247


>gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 247

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L NS   P V++L       N+G   R+     +  + L   R    +   + +++ A
Sbjct: 86  PALLNSLDTPFVLVLDGITDPHNLGACLRSAEASGVQIVILPRDRSAPLNATVKKAASGA 145

Query: 65  DCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              I  +RV +    L+  + + H  I  T        K+V   +              +
Sbjct: 146 AENIPVIRVTNLARTLR-VLKEYHLLIIGTAG---EAKKTVYEARMTG-----------S 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  GL        + +I  P+     SLN+S A  + ++E +   
Sbjct: 191 MALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVCLFEAVRQR 242


>gi|148550127|ref|YP_001270229.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148514185|gb|ABQ81045.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida F1]
 gi|313501027|gb|ADR62393.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
          Length = 153

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCA-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L   +  L    ++A T +  + F  V                      +FG E  GL
Sbjct: 61  ESLAGCLESLGNPRLFAFTTKGSHPFHEVAF--------------QPGDAFLFGPESRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +    +   +  P+ P   SLN+S  V + V+E    
Sbjct: 107 PAEVLDSLPAEHRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|332884280|gb|EGK04548.1| hypothetical protein HMPREF9456_00875 [Dysgonomonas mossii DSM
           22836]
          Length = 175

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
                  +I+L + +   NIG V R    F +  + L       P+ +   ++  A+  +
Sbjct: 19  SEPKTPLIIVLDNVRSLNNIGSVFRTSDAFLVEAVYLCGITATPPNVEIHKTALGAENSV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127
                +S+  +A+ +L        +        +   + +I+L+E ++ S +   +I G 
Sbjct: 79  AWA-YYSDTDQAVEEL--------KKNGYTLCAVEQAQNSIMLDELQLDSTKKYAVILGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  G+  + ++  +  +  P      SLN+S A  +++WE  + 
Sbjct: 130 EVKGVQQDVVSRCDCCVEIPQYGTKHSLNVSVAAGMVIWEFSKQ 173


>gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 235

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 24/176 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +     +L++     + IL   +   N G +AR+   F +  +   N R    ++    S
Sbjct: 78  LEDLIRKLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDAIIFPNRRAATVNDTVVKS 137

Query: 61  SANADCVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           SA A   ID  +V         LKEA     +IYAT                    + E 
Sbjct: 138 SAGAIYDIDVCKVSNISQSIDKLKEA---GFWIYAT--------------DLEGEDIREC 180

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            FSG    ++ G E  G++   +  S+  I+ P    F SLN S A  ++++E   
Sbjct: 181 DFSG-KAAVVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYEIRR 235


>gi|157963757|ref|YP_001503791.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157848757|gb|ABV89256.1| RNA methyltransferase, TrmH family, group 2 [Shewanella pealeana
           ATCC 700345]
          Length = 153

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R + N    +L L+ P      +K    +      + +V    N
Sbjct: 4   IALYEPEIAPNTGNIIRLIANNGC-KLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKN 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +   EA+A    +  TT  +R    S L  K             Q+  ++FG E  GL 
Sbjct: 63  FEAFLEAMAGKRIMACTTKGSR--PHSELTFK-------------QDDVLLFGPESRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 108 ADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQ 147


>gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
           P 36-108]
 gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
           P 36-108]
          Length = 246

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR      +  + +        +  A  +SA A
Sbjct: 88  PFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVSVNADAVKTSAGA 147

Query: 65  DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +   R   NLKE +     +  H + AT               E       +     
Sbjct: 148 LHTLPVCR-EQNLKETLQFLKNSGFHIVAAT---------------EKGDYDYTKADYTG 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIYEAVKQR 244


>gi|26991728|ref|NP_747153.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24986832|gb|AAN70617.1|AE016704_8 RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           KT2440]
          Length = 157

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N     L L+ P      +K    +       +    +  
Sbjct: 8   VILFQPEIPPNTGNIIRLCANSGCA-LHLIEPISFELDDKRLRRA--GLDYHEYATLKRH 64

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L   +  L    ++A T +  + F  V                      +FG E  GL
Sbjct: 65  ESLAGCLESLGNPRLFAFTTKGSHPFHEVAF--------------QPGDAFLFGPESRGL 110

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +    +   +  P+ P   SLN+S  V + V+E    
Sbjct: 111 PAEVLDSLPAEHRLRLPMRPGCRSLNLSNTVAVTVYEAWRQ 151


>gi|328946856|gb|EGG40993.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 184

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 79  ESLDDFMEQMD------GRLYLISK-----FAEKVYSEENYAAEDSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S +V ++V+E +     +    V E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNSVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|212633117|ref|YP_002309642.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3]
 gi|212554601|gb|ACJ27055.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3]
          Length = 193

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R + N    QL L+ P      +K    +       D   V   
Sbjct: 44  IALYEPEIAPNTGNIIRLIANNGC-QLHLIEPLGFDLEDKKLRRA--GLDYADLANVSHH 100

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +  +A+     +  TT  +R +              +E  F   +V ++FG E  G
Sbjct: 101 KNFESFLKAMQGKRIMACTTKGSRPH--------------SELTFQQDDV-LLFGPESRG 145

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 146 LPADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQ 187


>gi|160946170|ref|ZP_02093381.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270]
 gi|158447693|gb|EDP24688.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270]
          Length = 159

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 30/165 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLK 78
           +P++  N G + R     + T+L L+ P      +K    S       D ++  V+ N++
Sbjct: 2   EPEIPFNTGAIGRTCVATD-TKLHLIKPLGFSLDDKMVKRS--GLDYWDKLKLFVYENIE 58

Query: 79  EAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +      + +  ++TT   R   K   +P +                I+FG+E  G+  E
Sbjct: 59  DFYEKNPNANIYFSTTKAKRTYDKVEYSPNDY---------------IMFGKESKGIPEE 103

Query: 136 EI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +          +  P+     SLN+S +V ++++E +     S 
Sbjct: 104 ILVKNEEHC---VRIPMWGEIRSLNLSNSVSIVLYEALRQQDFSE 145


>gi|157149223|ref|YP_001456542.1| putative tRNA/rRNA methyltransferase YibK [Citrobacter koseri ATCC
           BAA-895]
 gi|157086428|gb|ABV16106.1| hypothetical protein CKO_05063 [Citrobacter koseri ATCC BAA-895]
          Length = 157

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A         L  K            G    ++FG E  GL    
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPATI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|319653676|ref|ZP_08007774.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317394649|gb|EFV75389.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 156

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 16/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P +  N G +A      + T L L+ P      E+    +       +SV +  +
Sbjct: 5   VVLYQPDIPANTGNIALTCAATD-TSLHLIRPLGFSTDEEMIKRA--GFDFWNSVNITYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++ +  +          +N+  F  +    E A    +   + +    +FG+E  GL  
Sbjct: 62  DSMDDFFS----------KNQGEFYYIETFGEQAHSSFDFSDASKEHYFMFGKETTGLPK 111

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + +    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 112 DLLEENKDHFLRIPMNDNVRSLNLSSTAAILVYEALRQQ 150


>gi|298502286|ref|YP_003724226.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237881|gb|ADI69012.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 180

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 66/163 (40%), Gaps = 24/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 74

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132
            +L++ I+                  +    + A  +     + + ++   +FGRE  GL
Sbjct: 75  ESLEDFIS-------------QMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGL 121

Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 122 P-EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
 gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
          Length = 292

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 56/167 (33%), Gaps = 11/167 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           NS +  ++I        N+G + R         L +   R    +      SA A     
Sbjct: 134 NSDEPVIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVSAGALESFP 193

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             RV  NL  A+  L             F       E    L +  F G  +G++ G E 
Sbjct: 194 VARVV-NLSRALETL---------KAEGFWIYGTVAEGGKRLQDFDFRGA-IGLVIGSEG 242

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GL+       + +IS P+    PSLN S A  + ++E         
Sbjct: 243 SGLSLLTQRCCDELISIPLEGKTPSLNASVAAAINLYEIYRQRWSEK 289


>gi|148988231|ref|ZP_01819694.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|149025477|ref|ZP_01836413.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168490616|ref|ZP_02714759.1| CspR [Streptococcus pneumoniae CDC0288-04]
 gi|221231328|ref|YP_002510480.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225854043|ref|YP_002735555.1| CspR [Streptococcus pneumoniae JJA]
 gi|298230513|ref|ZP_06964194.1| CspR [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254233|ref|ZP_06977819.1| CspR [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|147926695|gb|EDK77768.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147929427|gb|EDK80423.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|183574827|gb|EDT95355.1| CspR [Streptococcus pneumoniae CDC0288-04]
 gi|220673788|emb|CAR68290.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722323|gb|ACO18176.1| CspR [Streptococcus pneumoniae JJA]
          Length = 167

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 66/163 (40%), Gaps = 24/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132
            +L++ I+                  +    + A  +     + + ++   +FGRE  GL
Sbjct: 62  ESLEDFIS-------------QMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGL 108

Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 109 P-EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|332367413|gb|EGJ45146.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 184

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +                +++     +   E   +  +   +FGRE  GL  
Sbjct: 79  ESLDDFMEQMD-----------GKLYLISKFAEKVYSEEYFAAEGSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +  + V E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLELVHEYEA 180


>gi|260770799|ref|ZP_05879728.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|260614036|gb|EEX39226.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
          Length = 228

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 18/167 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  V R      L ++  V     WP+E+ R+    SA A   ++ V   ++  +AI
Sbjct: 30  PNNVSAVIRTADAVGLHKIHAV-----WPNEQMRTLTHTSAGARNWVE-VETHNSTLDAI 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T + +     V    + A+   + I   Q   II G E+ G++ + +AL++
Sbjct: 84  K--------TLKAQGMQVLVTNLSDDAVDFRD-IDYTQPTAIIVGSEKVGISKQALALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             I  P+  +  SLN+S A  L+++E       +      E   PA 
Sbjct: 135 QDIVIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYERDESPLPAD 181


>gi|332359116|gb|EGJ36937.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK49]
          Length = 184

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 24/176 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNVGIIFGRERWGL 132
            +L + +  +                +    + A  +   E   +  +   +FGRE  GL
Sbjct: 79  ESLDDFMEQMD-------------GHLYLISKFAEKVYSEENFAAKGSHYFMFGREDKGL 125

Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 126 P-EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 176

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 22/168 (13%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-- 66
           + S    +I+L + +   NIG V R    F + ++ L       P +    ++  A    
Sbjct: 19  EASKSPLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGATDSV 78

Query: 67  VIDSVR----VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
           V + V     V  +LKE          T A  +          E A+ LN+ ++   +  
Sbjct: 79  VWEYVENTMDVIQSLKEN------KVTTIAIEQA---------ENAVFLNDFKVSKDEKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +IFG E  G+  E ++  + ++  P      SLNIS +  ++VW+  
Sbjct: 124 ALIFGNEVKGVAQEVVSSCDTVVEIPQYGTKHSLNISVSAGVVVWDLW 171


>gi|152985329|ref|YP_001351180.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
 gi|150960487|gb|ABR82512.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
          Length = 153

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL  P++  N G + R   N   + L L+ P      +K    +        SVR + +
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCS-LHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L+   EA+        TT  +R                   +   +    +FG E  GL 
Sbjct: 63  LQDCLEALGQPRLFAFTTKGSRAFH---------------EVAYQRGDAFLFGPESRGLP 107

Query: 134 NEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            EE+  +      +  P+     SLN+S  V + V+E    
Sbjct: 108 -EEVRNALPAERRLRLPMREGCRSLNLSNTVAVTVYEAWRQ 147


>gi|311277468|ref|YP_003939699.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
           SCF1]
 gi|308746663|gb|ADO46415.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
           SCF1]
          Length = 157

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D    +  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +    +  A     +      L  K            G    ++FG E  GL    
Sbjct: 54  FTAVVRHHDYA-AFADAEKPQRLFALTTKGTPAHSAVSYRDGDY--LMFGPETRGLPASI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|256021387|ref|ZP_05435252.1| putative tRNA/rRNA methyltransferase YibK [Shigella sp. D9]
 gi|332282622|ref|ZP_08395035.1| YibK [Shigella sp. D9]
 gi|332104974|gb|EGJ08320.1| YibK [Shigella sp. D9]
          Length = 157

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++        E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDFRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|150391330|ref|YP_001321379.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
           QYMF]
 gi|149951192|gb|ABR49720.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
           QYMF]
          Length = 165

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 19/164 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L++P++ +N G +AR       T L L+ P      EK    +      +  +  +  
Sbjct: 13  VVLLEPEIPQNTGNIARTCVATGAT-LHLIGPMGFSIDEKQVKRAGLDYWELLDLNYYDR 71

Query: 77  LKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +       +Y  T + + N   V  P++             +  I+FG+E  G+  
Sbjct: 72  YADFLEKNKHPKVYCATTKAQKNHSEVAYPQD-------------DTYIMFGKETAGIPK 118

Query: 135 EEI-ALSNAIISFPVN--PLFPSLNISQAVLLMVWECMENSIVS 175
           E +       I  P+       SLN+S AV ++V+E +     S
Sbjct: 119 EILKDHEETCIRIPMVDIERARSLNLSNAVSIVVYEVLRQWGYS 162


>gi|297821280|ref|XP_002878523.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324361|gb|EFH54782.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 260

 Score = 72.0 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 24/177 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           ++LV PQ+  N G +AR      +  L LV P  G+  + AR   A  D     V+ +  
Sbjct: 81  VVLVSPQIPGNTGCIARTCAASAVG-LHLVGPL-GFQVDDARVKRAGLDYWPFVVVRAHS 138

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            ++  +E             R +   K ++A  +    ++          ++FG E  GL
Sbjct: 139 SWAEFQEYF-----------RQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSETCGL 187

Query: 133 TNEEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             E ++           +  P+   +   LN+S +V + ++E          +   E
Sbjct: 188 PPEALSDCKHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIECAPE 244


>gi|312797395|ref|YP_004030317.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312169170|emb|CBW76173.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 200

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 25/185 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   A  L +S     ++LV+P++  N G + R   N   T L LV P  G+P + A+  
Sbjct: 34  MPTPATSLTHSMFN--VVLVEPEIPPNTGNIIRLCANTGAT-LHLVEPL-GFPLDDAKMR 89

Query: 61  SANADCVI-DSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            A  D      +RV  +    +A    D   ++A T R  + F              +R 
Sbjct: 90  RAGLDYHEYAQMRVHQDWSTLLATQQPDPARMFAFTTRGSSMF-------------GDRA 136

Query: 116 FSGQNVGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           F   +   +FG E  GL +  +     +  +  P+     SLN+S  V ++V+E      
Sbjct: 137 FQPGDW-FVFGAETRGLCDTVLQHFAVDQRVRLPMRAGNRSLNLSNTVAVVVFEAWRQHG 195

Query: 174 VSSEK 178
                
Sbjct: 196 FEGGT 200


>gi|197305217|pdb|3E5Y|A Chain A, Crystal Structure Of Trmh Family Rna Methyltransferase
           From Burkholderia Pseudomallei
 gi|197305218|pdb|3E5Y|B Chain B, Crystal Structure Of Trmh Family Rna Methyltransferase
           From Burkholderia Pseudomallei
          Length = 160

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 8   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 65

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +A    D   ++A T R    F              +R F   +   +FG E  G
Sbjct: 66  DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 111

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L    +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 112 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 154


>gi|329766981|ref|ZP_08258509.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341]
 gi|328837706|gb|EGF87331.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341]
          Length = 157

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++  N G +AR     N   T+L L+ P      +K    +       + +   
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTN---TRLHLIRPLGFSIDDKHVKRA--GLDYWEHLDLV 58

Query: 73  VFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V+ +  E   A  D H+   T   ++N      + +E            +++  IFGRE 
Sbjct: 59  VWDSFDEFLEATNDKHYYLITKFGSKNYCDFDFSNEEN-----------EDIYFIFGRET 107

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL  E  E   S   +  P++    SLN+S    L+++E +   
Sbjct: 108 KGLPKEFRE-KYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQ 151


>gi|327470430|gb|EGF15886.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 167

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 24/176 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNVGIIFGRERWGL 132
            +L + +  +                +    + A  +   E   +  +   +FGRE  GL
Sbjct: 62  ESLDDFMEQID-------------GHLYLISKFAEKVYSEENFAAKGSHYFMFGREDKGL 108

Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 109 P-EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 163


>gi|157149268|ref|YP_001456587.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|157086473|gb|ABV16151.1| hypothetical protein CKO_05108 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A++
Sbjct: 30  PHNVSAIIRTADAVGVHEIHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVS 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|157163090|ref|YP_001460408.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli HS]
 gi|170018161|ref|YP_001723115.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ATCC
           8739]
 gi|188491907|ref|ZP_02999177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           53638]
 gi|194435762|ref|ZP_03067865.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           101-1]
 gi|253771551|ref|YP_003034382.1| tRNA/rRNA methyltransferase YibK [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163536|ref|YP_003046644.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli B str.
           REL606]
 gi|293463933|ref|ZP_06664347.1| RNA methyltransferase [Escherichia coli B088]
 gi|300822379|ref|ZP_07102519.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           119-7]
 gi|300927961|ref|ZP_07143520.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           187-1]
 gi|312972108|ref|ZP_07786282.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
 gi|331670450|ref|ZP_08371289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA271]
 gi|331679700|ref|ZP_08380370.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
 gi|157068770|gb|ABV08025.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli HS]
 gi|169753089|gb|ACA75788.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli ATCC
           8739]
 gi|188487106|gb|EDU62209.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           53638]
 gi|194425305|gb|EDX41289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           101-1]
 gi|242379130|emb|CAQ33932.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
 gi|253322595|gb|ACT27197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975437|gb|ACT41108.1| predicted rRNA methylase [Escherichia coli B str. REL606]
 gi|253979593|gb|ACT45263.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
 gi|291321565|gb|EFE61001.1| RNA methyltransferase [Escherichia coli B088]
 gi|300464053|gb|EFK27546.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           187-1]
 gi|300525026|gb|EFK46095.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           119-7]
 gi|310334485|gb|EFQ00690.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
 gi|320201364|gb|EFW75945.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           EC4100B]
 gi|323934848|gb|EGB31230.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323939632|gb|EGB35838.1| RNA methyltransferase [Escherichia coli E482]
 gi|323959857|gb|EGB55505.1| RNA methyltransferase [Escherichia coli H489]
 gi|323971251|gb|EGB66496.1| RNA methyltransferase [Escherichia coli TA007]
 gi|331062512|gb|EGI34432.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA271]
 gi|331072872|gb|EGI44197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
          Length = 157

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++        E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDFRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|312140792|ref|YP_004008128.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311890131|emb|CBH49449.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 150

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 19/163 (11%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
             +P++  N G   R +      +L LV P     SE     +      + SV V  NL+
Sbjct: 2   FHEPRIPPNTGNAIRMVAGTGC-ELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHENLE 60

Query: 79  EAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            A   L    ++A TA               A      +       ++FG E  GL  + 
Sbjct: 61  AAWDALRPERVFAFTA--------------HASTSYADLAYQPGDVLLFGPEPTGLAQDV 106

Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +      A +  P+ P   SLN+S A  ++ +E       +  
Sbjct: 107 LEDPHVTAQVRIPMVPGRRSLNLSNAAAVVTYEAWRQHGFAGG 149


>gi|253998269|ref|YP_003050332.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253984948|gb|ACT49805.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp.
           SIP3-4]
          Length = 164

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N   T+L LV P      +K    +        +++V  N
Sbjct: 14  IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 72

Query: 77  LKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +    A+A       TT  +  +                 I   +    +FG E  GL 
Sbjct: 73  WEACCAALAGRRMFALTTKGSARHS---------------TIAFQEGDVFVFGPETRGLP 117

Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E          +  P+ P   SLN+S +  ++++E       +  
Sbjct: 118 EEIRDQFTPEHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQHDFAGA 163


>gi|293393588|ref|ZP_06637898.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
 gi|291423923|gb|EFE97142.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
          Length = 157

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL ++ P      +K    +       +  RV  +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHVIEPMGFPWDDKRLRRA--GLDYHEFTRVKRH 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                AD     A+        + + A        +  +   Q   ++FG E  GL  E 
Sbjct: 61  -----ADYAAFMAS-----EQPQRLFALTTKGTPAHSAVNYQQGDYLLFGPETRGLPAEI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+     S+N+S AV ++V+E    
Sbjct: 111 LNALPPQQKIRIPMQAQSRSMNLSNAVAVVVYEAWRQ 147


>gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 255

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 29/165 (17%)

Query: 16  VIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
            +I+V+  +   N+G + R+   F +  L + + +  + +     SS      ++     
Sbjct: 108 TVIIVEGVEKPGNLGAILRSCEAFGIDALIVADGKTDFYNPNVIRSSVGCLFGMEVYQAE 167

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L E +    F   TT              E+A  L +R F  Q   ++FG E  GL
Sbjct: 168 NKETL-EFLQKNSFNIYTT-----------LMDESAEDLYKRDFR-QRSAVLFGTEHSGL 214

Query: 133 TNEEIALSNAIIS------FPVNPLFPSLNISQAVLLMVWECMEN 171
           +       +  I        P+     SLN+S AV +  +E +  
Sbjct: 215 S-------DFWIGKGKNTLIPMAGSIDSLNLSNAVAITCYESLRQ 252


>gi|213416855|ref|ZP_03349999.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 52

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 201 ISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
            +L   G+ R      ++++ L  +F R     +E+ +LRGI++++++ ++
Sbjct: 1   QTLLSTGFIR-ENHPGQVMNKLRRLFTRARPESQELNILRGILASIEQQNK 50


>gi|303248118|ref|ZP_07334383.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
           JJ]
 gi|302490517|gb|EFL50425.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
           JJ]
          Length = 196

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 21/180 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82
             N+  + R+   F + ++ L+     +P    + SS +A   +++ R     +L  ++ 
Sbjct: 34  PHNVSAILRSCDAFGIHRVHLLYTDTAFP-ALGKKSSGSAKKWVETTRHPDAASLASSLK 92

Query: 83  DLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              F   AT+              E A  L E   +G  V II G E  G+  E     +
Sbjct: 93  GQGFALVATS------------FSETARPLQEWDLTG-KVAIILGNEHRGVDEELAPYVD 139

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201
             +  P+  +  SLN+S A  ++++E     + +   +           E        E 
Sbjct: 140 GALYIPMQGMVQSLNVSVAAAVILYEGFRQRLAAGCYDAPCLPP----EEFDRLAAAWEQ 195


>gi|325846711|ref|ZP_08169626.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481469|gb|EGC84510.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 152

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L+ P+   N+G ++R       ++L L+ P     S K+   +       D +   V 
Sbjct: 4   IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSNKSLKKA--GIDYWDKLDLVVH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E      ++           K++   +  +      I        IFGRE+ G+  
Sbjct: 61  DSLDEF---YTYV---------KDKNIYLIETGSDKNYADISYKDGDYFIFGREKEGIEK 108

Query: 135 EEIALS-NAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171
           E +      I + P  N L  SLN++ +V ++++E +  
Sbjct: 109 EILDKYKEKIYTIPMTNKLNRSLNLANSVAIVLYEGLRQ 147


>gi|313471801|sp|C6X9I5|TRML_METSD RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 154

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R   N   T+L LV P      +K    +        +++V  N
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTG-TRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHEN 62

Query: 77  LKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +    A+A       TT  +  +                 I   +    +FG E  GL 
Sbjct: 63  WEACCAALAGRRMFALTTKGSARHS---------------TIAFQEGDVFVFGPETRGLP 107

Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E          +  P+ P   SLN+S +  ++++E       +  
Sbjct: 108 EEIRDQFTPEHRVRLPMMPNNRSLNLSNSAAVLLYEAWRQHDFAGA 153


>gi|182683437|ref|YP_001835184.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
 gi|182628771|gb|ACB89719.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae
           CGSP14]
          Length = 180

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 74

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLT 133
            +L++ I            ++   K  L  K A  V +E  + + ++   +FGRE  GL 
Sbjct: 75  ESLEDFI------------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP 122

Query: 134 NEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
            E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 123 -EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|15900400|ref|NP_345004.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
 gi|111657132|ref|ZP_01407916.1| hypothetical protein SpneT_02001643 [Streptococcus pneumoniae
           TIGR4]
 gi|148983867|ref|ZP_01817186.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|148993522|ref|ZP_01823013.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|148996883|ref|ZP_01824601.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|149003702|ref|ZP_01828547.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|149012635|ref|ZP_01833632.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|168482732|ref|ZP_02707684.1| CspR [Streptococcus pneumoniae CDC1873-00]
 gi|168485607|ref|ZP_02710115.1| CspR [Streptococcus pneumoniae CDC1087-00]
 gi|168488175|ref|ZP_02712374.1| CspR [Streptococcus pneumoniae SP195]
 gi|168576802|ref|ZP_02722652.1| CspR [Streptococcus pneumoniae MLV-016]
 gi|225856208|ref|YP_002737719.1| CspR [Streptococcus pneumoniae P1031]
 gi|225858329|ref|YP_002739839.1| CspR [Streptococcus pneumoniae 70585]
 gi|237649475|ref|ZP_04523727.1| CspR [Streptococcus pneumoniae CCRI 1974]
 gi|237822188|ref|ZP_04598033.1| CspR [Streptococcus pneumoniae CCRI 1974M2]
 gi|303255626|ref|ZP_07341676.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|303259549|ref|ZP_07345526.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|303262412|ref|ZP_07348355.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264829|ref|ZP_07350746.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS397]
 gi|303266816|ref|ZP_07352696.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS457]
 gi|303269075|ref|ZP_07354856.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS458]
 gi|307067120|ref|YP_003876086.1| putative rRNA methylase [Streptococcus pneumoniae AP200]
 gi|307126705|ref|YP_003878736.1| CspR [Streptococcus pneumoniae 670-6B]
 gi|14971957|gb|AAK74644.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae TIGR4]
 gi|147757458|gb|EDK64497.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|147758264|gb|EDK65265.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147763440|gb|EDK70377.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|147924014|gb|EDK75126.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147927891|gb|EDK78912.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|172043851|gb|EDT51897.1| CspR [Streptococcus pneumoniae CDC1873-00]
 gi|183571281|gb|EDT91809.1| CspR [Streptococcus pneumoniae CDC1087-00]
 gi|183572995|gb|EDT93523.1| CspR [Streptococcus pneumoniae SP195]
 gi|183577487|gb|EDT98015.1| CspR [Streptococcus pneumoniae MLV-016]
 gi|225720184|gb|ACO16038.1| CspR [Streptococcus pneumoniae 70585]
 gi|225726295|gb|ACO22147.1| CspR [Streptococcus pneumoniae P1031]
 gi|301793708|emb|CBW36095.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|301799560|emb|CBW32112.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|301801379|emb|CBW34065.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV200]
 gi|302597411|gb|EFL64507.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|302636511|gb|EFL67003.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639483|gb|EFL69941.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|302641388|gb|EFL71754.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS458]
 gi|302643654|gb|EFL73921.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS457]
 gi|302645696|gb|EFL75926.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS397]
 gi|306408657|gb|ADM84084.1| Predicted rRNA methylase (SpoU class) [Streptococcus pneumoniae
           AP200]
 gi|306483767|gb|ADM90636.1| CspR [Streptococcus pneumoniae 670-6B]
 gi|327390900|gb|EGE89240.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA04375]
 gi|332075333|gb|EGI85803.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332076933|gb|EGI87395.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA17545]
 gi|332202382|gb|EGJ16451.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332203662|gb|EGJ17729.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332204506|gb|EGJ18571.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 167

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLT 133
            +L++ I            ++   K  L  K A  V +E  + + ++   +FGRE  GL 
Sbjct: 62  ESLEDFI------------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP 109

Query: 134 NEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
            E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 110 -EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|304438915|ref|ZP_07398838.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372581|gb|EFM26164.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 155

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 29/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           I+L +P++  N G +AR+     L  T+L L+ P      +K    +       D   + 
Sbjct: 5   IVLYEPEIHWNTGAIARSC---GLTHTRLHLIEPFGFEIDDKHLKRA--GLDYWDLVDIN 59

Query: 73  VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ N++E  A   +  F  ATT                A  L   +       I+FG E 
Sbjct: 60  IYKNVEELYAKYPEGRFFMATT---------------KAKKLYTEVEFQDEDFIMFGPET 104

Query: 130 WGLTNEEIA-LSNAIISFPVNPLFP-SLNISQAVLLMVWECMEN 171
            GL  + I    +  I  P+   F  SLN++ +  ++++E +  
Sbjct: 105 RGLPEDMIFGNYDMAIKIPMLKDFGRSLNLANSANIILFEALRQ 148


>gi|149180216|ref|ZP_01858721.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
 gi|148852408|gb|EDL66553.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
          Length = 156

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 16/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N   +A      + T L L+ P      EK    +       +SV +  +
Sbjct: 5   VVLYQPEIPANTANIALTCAVTD-TALHLIRPIGFSTDEKMIKRA--GLDYWESVNITYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+E  +          +N   F  +    E A    +     +    +FG+E  GL  
Sbjct: 62  DSLEEFFS----------KNHGEFYYIETYGEKAHSSFDFSDVTKEHYFMFGKETTGLPE 111

Query: 135 EEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +     +   +  P+N    SLN+S    ++V+E +   
Sbjct: 112 DLPERYHGHFLRIPMNDNVRSLNLSNTAAILVYEALRQQ 150


>gi|15804150|ref|NP_290189.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           EDL933]
 gi|15833738|ref|NP_312511.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str.
           Sakai]
 gi|157158942|ref|YP_001465089.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           E24377A]
 gi|168746844|ref|ZP_02771866.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753429|ref|ZP_02778436.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168759703|ref|ZP_02784710.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766025|ref|ZP_02791032.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772428|ref|ZP_02797435.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779761|ref|ZP_02804768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785483|ref|ZP_02810490.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC869]
 gi|168797449|ref|ZP_02822456.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC508]
 gi|191168138|ref|ZP_03029935.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
 gi|193066094|ref|ZP_03047150.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
 gi|193068534|ref|ZP_03049496.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E110019]
 gi|194427425|ref|ZP_03059974.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
 gi|195935135|ref|ZP_03080517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. EC4024]
 gi|208809488|ref|ZP_03251825.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813348|ref|ZP_03254677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819822|ref|ZP_03260142.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400099|ref|YP_002273088.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209921079|ref|YP_002295163.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SE11]
 gi|217325527|ref|ZP_03441611.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218556171|ref|YP_002389084.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI1]
 gi|218697330|ref|YP_002404997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 55989]
 gi|254795564|ref|YP_003080401.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. TW14359]
 gi|260846626|ref|YP_003224404.1| putative rRNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|260857996|ref|YP_003231887.1| putative rRNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|260870339|ref|YP_003236741.1| putative rRNA methylase [Escherichia coli O111:H- str. 11128]
 gi|261224209|ref|ZP_05938490.1| predicted rRNA methylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254820|ref|ZP_05947353.1| putative rRNA methylase [Escherichia coli O157:H7 str. FRIK966]
 gi|291284980|ref|YP_003501798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O55:H7 str. CB9615]
 gi|300815154|ref|ZP_07095379.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           107-1]
 gi|300919824|ref|ZP_07136299.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           115-1]
 gi|300923393|ref|ZP_07139434.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           182-1]
 gi|301325291|ref|ZP_07218798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           78-1]
 gi|309797477|ref|ZP_07691868.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           145-7]
 gi|12518356|gb|AAG58753.1|AE005588_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363959|dbj|BAB37907.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|157080972|gb|ABV20680.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E24377A]
 gi|187771711|gb|EDU35555.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188018363|gb|EDU56485.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002486|gb|EDU71472.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358940|gb|EDU77359.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364523|gb|EDU82942.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369515|gb|EDU87931.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374384|gb|EDU92800.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC869]
 gi|189380038|gb|EDU98454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC508]
 gi|190901807|gb|EDV61559.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
 gi|192926256|gb|EDV80894.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
 gi|192958185|gb|EDV88626.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E110019]
 gi|194414465|gb|EDX30738.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
 gi|208729289|gb|EDZ78890.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734625|gb|EDZ83312.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739945|gb|EDZ87627.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161499|gb|ACI38932.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209754868|gb|ACI75746.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754870|gb|ACI75747.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754872|gb|ACI75748.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754874|gb|ACI75749.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754876|gb|ACI75750.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209914338|dbj|BAG79412.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217321748|gb|EEC30172.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354062|emb|CAV00592.1| putative rRNA methylase [Escherichia coli 55989]
 gi|218362939|emb|CAR00576.1| putative rRNA methylase [Escherichia coli IAI1]
 gi|254594964|gb|ACT74325.1| predicted rRNA methylase [Escherichia coli O157:H7 str. TW14359]
 gi|257756645|dbj|BAI28147.1| predicted rRNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|257761773|dbj|BAI33270.1| predicted rRNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|257766695|dbj|BAI38190.1| predicted rRNA methylase [Escherichia coli O111:H- str. 11128]
 gi|290764853|gb|ADD58814.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O55:H7 str. CB9615]
 gi|300413177|gb|EFJ96487.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           115-1]
 gi|300420303|gb|EFK03614.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           182-1]
 gi|300532046|gb|EFK53108.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           107-1]
 gi|300847818|gb|EFK75578.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           78-1]
 gi|308118913|gb|EFO56175.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           145-7]
 gi|320191338|gb|EFW65988.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. EC1212]
 gi|320639515|gb|EFX09123.1| putative rRNA methylase [Escherichia coli O157:H7 str. G5101]
 gi|320644954|gb|EFX13984.1| putative rRNA methylase [Escherichia coli O157:H- str. 493-89]
 gi|320650221|gb|EFX18710.1| putative rRNA methylase [Escherichia coli O157:H- str. H 2687]
 gi|320655573|gb|EFX23501.1| putative rRNA methylase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661307|gb|EFX28731.1| putative rRNA methylase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666321|gb|EFX33320.1| putative rRNA methylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323155260|gb|EFZ41443.1| spoU rRNA Methylase family protein [Escherichia coli EPECa14]
 gi|323160715|gb|EFZ46652.1| spoU rRNA Methylase family protein [Escherichia coli E128010]
 gi|323173199|gb|EFZ58828.1| spoU rRNA Methylase family protein [Escherichia coli LT-68]
 gi|323179422|gb|EFZ64989.1| spoU rRNA Methylase family protein [Escherichia coli 1180]
 gi|323182637|gb|EFZ68040.1| spoU rRNA Methylase family protein [Escherichia coli 1357]
 gi|323944062|gb|EGB40142.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019718|gb|EGB88937.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           117-3]
 gi|324116052|gb|EGC09978.1| RNA methyltransferase [Escherichia coli E1167]
 gi|326337390|gb|EGD61225.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. 1044]
 gi|326339915|gb|EGD63722.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. 1125]
          Length = 157

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++        E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDFRAFLEAENPQRLFALTTKGTPAHSAVNYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|304399040|ref|ZP_07380909.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
 gi|304353500|gb|EFM17878.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
          Length = 221

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 24/158 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS++ R  +S++        V     + +A+ 
Sbjct: 19  PHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVKVVTHPTIGDAVK 73

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      + AT     +     +  +E    L           I+ G+E+ G+T E +A
Sbjct: 74  QLKQQKMQVLAT-----HLSADAVDFREIDYTL--------PTCILMGQEKTGITEEALA 120

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L++  I  P+  +  SLN+S A  L+++E       + 
Sbjct: 121 LADRQIVIPMVGMVQSLNVSVACALILYEAQRQRQNAG 158


>gi|167585363|ref|ZP_02377751.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ubonensis
           Bu]
          Length = 156

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAEMRVHP 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  DWDAFVAAETPDPARMFAFTTRGSGRFHDHAFQPGDW---------------FVFGSETR 106

Query: 131 GLTNEEIAL-SNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    +   +NA  +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLPAPLLERFANAQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|171464223|ref|YP_001798336.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193761|gb|ACB44722.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 156

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 27/171 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++L +P++  N G + R   N    +L L+ P  G+P E A+   A  D      V+V+ 
Sbjct: 4   VVLFEPEIPPNTGNIIRLCANTG-AKLHLIEPL-GFPMEDAKLRRAGLDYHEFARVKVYK 61

Query: 76  NLKEAIADLH----FIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           N  + + D H     ++A TT  + N  +   +P +                 +FG E  
Sbjct: 62  NWAQFLQDEHPNPEHLFALTTKGSGNFHEGQYSPNDY---------------FVFGSETK 106

Query: 131 GLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           G+T +E+     ++  +   +     SLN+S  V ++V+E    + ++  +
Sbjct: 107 GIT-DEVRNSIPAHNRMRLAMQDSSRSLNLSNTVAIVVYEAWRQNGLAGGQ 156


>gi|28899635|ref|NP_799240.1| rRNA methylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361516|ref|ZP_05774563.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus K5030]
 gi|260879125|ref|ZP_05891480.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AN-5034]
 gi|260895488|ref|ZP_05903984.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus Peru-466]
 gi|28807887|dbj|BAC61124.1| rRNA methylase, SpoU family [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088066|gb|EFO37761.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus Peru-466]
 gi|308091610|gb|EFO41305.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AN-5034]
 gi|308112865|gb|EFO50405.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus K5030]
          Length = 159

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    N
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKN 62

Query: 77  LKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  +         +      TT          +  +  A  +           ++FG E
Sbjct: 63  YQAFLEYLDKEKQGNYRLFACTTKTTG----HHVDAQYKAGDV-----------LMFGPE 107

Query: 129 RWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL  E I        I  P+ P   SLN+S AV ++ +E    
Sbjct: 108 TRGLPAEIIEGLPMEQRIRIPMMPDARSLNLSNAVAIIAFEAWRQ 152


>gi|315178841|gb|ADT85755.1| tRNA guanosine-2'-O-methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 228

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 18/167 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  V R      L ++  V     WP+E+ R+    SA A   ++ V   ++  +AI
Sbjct: 30  PNNVSAVIRTADAVGLHKIHAV-----WPNEQMRTLTHTSAGARNWVE-VETHNSTLDAI 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T + +     V    + A+   + I   Q   II G E+ G++ + +AL++
Sbjct: 84  K--------TLKAQGMQVLVTNLSDDAVDFRD-IDYTQPTAIIVGSEKVGISKQALALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             I  P+  +  SLN+S A  L+++E       +      E   PA 
Sbjct: 135 QDIVIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYKRDESPLPAD 181


>gi|332293439|ref|YP_004432048.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171525|gb|AEE20780.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 165

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 16/160 (10%)

Query: 17  IILVDPQL---GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           IILV  +      N G + R    F + ++     +    S + R ++ N +  I   RV
Sbjct: 17  IILV-CEHMTSPANAGSIFRLADAFGVKEIIFCGNQPDTRSSRLRKTARNTEKTIPF-RV 74

Query: 74  FSNLKEAIADLHFIYATTARNR--NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +K  + +LH +  T+      +N K +                   V +I G E  G
Sbjct: 75  SDTIKNTLQELHDLSFTSIALEITSNSKPMSTVD---------FSRLDKVALIIGAENIG 125

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +T+E +   N I    +  +  S+N++QA  + ++E   +
Sbjct: 126 ITDETLEQCNNIAHITMYGINSSMNVAQATGIALYELTRS 165


>gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
           7084]
 gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
           7084]
          Length = 299

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 11/169 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       N G + R+      + + + N R       A  +SA A   +   RV  
Sbjct: 142 VVLLDHVTDEGNFGAIVRSAEVVGASGIVIANARSASVGVGAYKTSAGAVMHLPIARV-P 200

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  A+           R +     V A  E A         G  + ++ G E  G++  
Sbjct: 201 NLATALD----------RLKEAGFWVAAATEHAEQDAWSAPLGGRLCLVMGSEGGGISRL 250

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
                +     P      SLN++QA  ++ +E +  S +    + +  +
Sbjct: 251 VRERCDFGCRLPQRGRIESLNVAQAATVLCYEWLRRSSMGPSPSAEGGD 299


>gi|167579696|ref|ZP_02372570.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis TXDOH]
          Length = 156

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A      +  +  V 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAG-LDYHEYAQMHVH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +    +A    D    +A T R    F              +R F   +   +FG E  
Sbjct: 61  RDWDAFVAAEAPDPARTFAFTTRGSGRFH-------------DRAFQPGDW-FVFGSETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLAPALVERFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
 gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
          Length = 181

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 17/178 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P V++L D +   N+G V R+   F ++ + L       P  +   ++  A
Sbjct: 16  EEFKEAEKLPLVVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTALGA 75

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +  I   R F+  +EA+ +L     F+Y+      +     L  +             Q 
Sbjct: 76  EESIAW-RYFATAEEAVRNLQTKGFFVYSIEQAEGSTKLHHLTLERR-----------QK 123

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             ++ G E  G+    + LS+  +  P      SLN+S A  ++VWE  +  +   + 
Sbjct: 124 YAVVLGNEVKGVHQSVVDLSDGCLEIPQWGTKHSLNVSVAAGMVVWEFAKQLLQPLQP 181


>gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 248

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 23/173 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           LQN+ +  ++ L       N+G   R      +    +V PRD     +  AR  +A   
Sbjct: 91  LQNNDQALLLALDQVTDPHNLGACIRTAAAMGIAA-VIV-PRDRSASLTPTARKVAAGGA 148

Query: 66  CVIDSVRVFSNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  ++V +NL   +A         +  T          +L   E A+ + +  FSG N
Sbjct: 149 EKVKFIQV-TNLARTLAHIKAHFFVKVVGT----------MLD--EKALPIQKYDFSG-N 194

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           V I+ G E  GL     +  +  +  P++    SLN+S A  + ++E     +
Sbjct: 195 VAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMALYEACRQRL 247


>gi|19551878|ref|NP_599880.1| SpoU class rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389537|ref|YP_224939.1| tRNA/rRNA methyltransferase protein [Corynebacterium glutamicum
           ATCC 13032]
 gi|145294815|ref|YP_001137636.1| hypothetical protein cgR_0762 [Corynebacterium glutamicum R]
 gi|21323412|dbj|BAB98040.1| Predicted rRNA methylase (SpoU class) [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324871|emb|CAF19353.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
 gi|140844735|dbj|BAF53734.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 157

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 56/160 (35%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +I  +P +  N G   R         L LV P     +EK    +      +  V V + 
Sbjct: 8   VIFDNPVIPPNTGNAIRMCAGTG-AHLHLVEPLGFELTEKHLRRAGLDYHDLADVTVHAT 66

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             EA+A      F + TTA  R                 +  F   +  ++FG E  GL 
Sbjct: 67  FDEAMAAVPGRVFAFTTTANTR---------------FTDIAFEPGD-ALLFGTEPTGLP 110

Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E +  S     +  P+ P   S+N+S +  +  +E    
Sbjct: 111 QEHVEHSRITSELRIPMLPGRRSMNLSNSAAVATYEAWRQ 150


>gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 246

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 21/172 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANAD 65
           ++ SA   +++L       N+G   R      +    +V P+D     +   R  +  A 
Sbjct: 91  IKKSATPFLLVLDGVTDPHNLGACLRTADAAGID--AIVVPKDNSVALTPVVRKVACGAA 148

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +I  ++V +    L+E      ++  T                 A     +      + 
Sbjct: 149 DLIPLIQVTNLARTLREIKDAGVWVVGTAG--------------EATQSIYQCKMQGPIA 194

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           ++ G E  G+        + +I  P+     SLN+S A  + ++E +    +
Sbjct: 195 LVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLYEIVRQRAL 246


>gi|73662249|ref|YP_301030.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494764|dbj|BAE18085.1| putative rRNA methylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 156

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  PQ+  N G +AR        T L L+ P      +K    +       +SV +  
Sbjct: 5   IVLFQPQIPGNTGSIARTCA--GTYTHLHLIKPLGFSTDDKMLKRA--GLDYWESVNITY 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + N++    +      T        K   +  +          +  +   IFGRE  GL 
Sbjct: 61  YENIESFFENTD---GTYYLLTKFGKKTYSDFDF-------TDTEHDHFFIFGRETTGLP 110

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    A +   +  P+N    SLN+S    L+++E +   
Sbjct: 111 DWVKDAYAETALRIPMNDNIRSLNLSNTASLLIYEALRQQ 150


>gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 225

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 26/179 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
            +N+  V R    F +  L  +  P    P ++ +  S NAD  +D VR +S+  E +A 
Sbjct: 38  PQNVNAVLRTCEAFGVQTLHAIEGPMK--PYDRNKKISQNADKWLD-VRRWSSTTECLAH 94

Query: 84  LHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           L      +YAT    R+  + +             +     V ++FG E+ G++ E +AL
Sbjct: 95  LRAEGFAVYATHLGERS--RPM-----------AGLSFAGKVALVFGNEQRGVSEEALAL 141

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL--LSFL 196
           ++A  + P+     SLN+S A  + +   +E   V   ++    + P  + ++    F 
Sbjct: 142 ADACYAIPMRGFVQSLNVSVAAAISLAHAVERREVERGRH---GDLPEDEAQVLRERFY 197


>gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           JA-3-3Ab]
          Length = 354

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 20/183 (10%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            Q + S   PV ++L   Q   N+G +AR++  F +  + +   R    +      +A A
Sbjct: 179 EQSRQSGPHPVLVVLDGIQDPHNLGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGA 238

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +   RV  NL  A+  L     ++Y TT+             + A  +    F  + 
Sbjct: 239 LSTLPVARVV-NLNRALEYLKGQGFWVYGTTS-------------QGAAPIYSADFR-RP 283

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + ++ G E  G++       + ++S P+     SLN S A  + ++E          +N+
Sbjct: 284 IALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALYEIHRQRSPHRGRNI 343

Query: 181 KEQ 183
            +Q
Sbjct: 344 SQQ 346


>gi|16762567|ref|NP_458184.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144056|ref|NP_807398.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052646|ref|ZP_03345524.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417916|ref|ZP_03351009.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425217|ref|ZP_03357967.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580806|ref|ZP_03362632.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647939|ref|ZP_03377992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289826480|ref|ZP_06545592.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25331661|pir||AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504872|emb|CAD03250.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139692|gb|AAO71258.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 229

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIDDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|331017065|gb|EGH97121.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 151

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 25/166 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L    E I +      TT  +R    +   P +                 +FG E  G
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKGSRPFHDASFTPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           L  + +  LS+   +  P+     SLN+S  V + V+E      V+
Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQHGVA 151


>gi|313471800|sp|B8CHC9|TRML_SHEPW RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 153

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R + N    QL L+ P      +K    +       D   V   
Sbjct: 4   IALYEPEIAPNTGNIIRLIANNGC-QLHLIEPLGFDLEDKKLRRA--GLDYADLANVSHH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +  +A+     +  TT  +R +              +E  F   +V ++FG E  G
Sbjct: 61  KNFESFLKAMQGKRIMACTTKGSRPH--------------SELTFQQDDV-LLFGPESRG 105

Query: 132 LTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 106 LPADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQ 147


>gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
 gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
          Length = 218

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 19  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 74  HL--------KGRGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177


>gi|323965873|gb|EGB61321.1| RNA methyltransferase [Escherichia coli M863]
 gi|323975171|gb|EGB70276.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|327250731|gb|EGE62433.1| spoU rRNA Methylase family protein [Escherichia coli STEC_7v]
          Length = 157

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++  +     E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHNYAAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708]
 gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708]
          Length = 270

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 18  IL-VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +L V+  Q   N+G + RA      + L L +      + K   +SA     +D   V  
Sbjct: 119 VLGVETLQDPGNLGTMIRAAAAAGASGLWLSDDSVDLDNPKVLRASAGQWFRLDKA-VSP 177

Query: 76  NLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +LK  +         + AT       +  V                 +   I+ G E  G
Sbjct: 178 DLKATVQQCQQAGMQVIATLPTASLTYWEV--------------DWRKPSLILLGNEGAG 223

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           L+++  A+++  +  P+NP   SLN++ A  LM++E     I
Sbjct: 224 LSDDLAAMADTQVKIPLNPGVDSLNVAIAAALMLYEAQRQKI 265


>gi|271966808|ref|YP_003341004.1| tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270509983|gb|ACZ88261.1| putative tRNA/rRNA methyltransferase [Streptosporangium roseum DSM
           43021]
          Length = 186

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---A 80
              NIG + R    F + ++ L        + KA+ ++   D ++        ++    A
Sbjct: 38  GPFNIGSIFRTAAAFGVERIWLAGNATPPTNPKAQKTALGTDRLVAWEEPVPAVEAVRAA 97

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            AD   + A           V    +AA +    +  G +V ++ G E  G +   +  +
Sbjct: 98  KADGFTVVA-----------VELTGDAAPLHAAEL--GGDVCLVVGSEDHGCSPALLEAA 144

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           + +   P      S N++ A  + + E         E    E
Sbjct: 145 DGVCYIPQVGRVGSFNVAVATAIALAEARRREWSGKEAPDGE 186


>gi|149376046|ref|ZP_01893812.1| predicted rRNA methylase [Marinobacter algicola DG893]
 gi|149359683|gb|EDM48141.1| predicted rRNA methylase [Marinobacter algicola DG893]
          Length = 154

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           ++L +P++  N G + R   N    QL L+ P      +K    +       +   V   
Sbjct: 4   VVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFTLEDKQMRRA--GLDYSEYATVTVH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +    E+         TT  +R                   +       ++FG E  G
Sbjct: 61  SDYQAFLESEQPSRLFGLTTKGSRGYH---------------DVEYQNGDYLMFGPETRG 105

Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +  E    +  +  P+ P   SLN+S  V L+V+E    
Sbjct: 106 LPQDIREAMPEHHRLRVPMRPESRSLNLSNTVALVVYEAWRQ 147


>gi|88705266|ref|ZP_01102977.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71]
 gi|88700356|gb|EAQ97464.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71]
          Length = 154

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L +P++  N G + R   N +   L L+ P      +K    +         V+   +
Sbjct: 4   VALYEPEIPPNTGNIMRLCANTSCP-LHLIKPLGFSLEDKQLRRAGLDYREFAHVQTHDS 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
           L   I  LH       R R    S    +       ++        ++FG E  GL    
Sbjct: 63  LDALIQTLH-------RPRIWTLSTRGTRNYTDADFQKGD-----VLLFGPETRGLPATV 110

Query: 135 -EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +E+ + +  +  P+ P   SLN+S A  L+++E +       
Sbjct: 111 LDELGV-HRCLRVPMYPDSRSLNLSNAAALVLYEGLRQQGFPG 152


>gi|325499155|gb|EGC97014.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ECD227]
          Length = 157

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +        +V    N
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHN 62

Query: 77  LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +   +   ++A T +          P  +A+        G    ++FG E  GL +
Sbjct: 63  YAAFLKAENPQRLFALTTKG--------TPAHSAV----SYQDGDY--LMFGPETRGLPS 108

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 109 SILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|124007000|ref|ZP_01691829.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
 gi|123987453|gb|EAY27173.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
          Length = 176

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 66/163 (40%), Gaps = 10/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +   K  VI+L + +   N+G   R    F + ++ L       P  + + ++  A   +
Sbjct: 19  ETPKKPVVIVLDNIRSMHNVGSSFRTSDAFLVEKIYLCGITAKPPHREIQKTALGATESV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127
              +  +  +EA+A        T +        +   + ++ L +    + +    +FG 
Sbjct: 79  AW-QHVATTEEALA--------TLKQEGWTIVAIEQVDKSVSLEKFNFEADKKYAFVFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E +G+  E +  ++  I  P      SLNIS ++ +++W+   
Sbjct: 130 EVFGVDEEVVKQADVCIEIPQFGTKHSLNISVSMGVVIWDYFS 172


>gi|284801266|ref|YP_003413131.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
 gi|284994408|ref|YP_003416176.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
 gi|284056828|gb|ADB67769.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
 gi|284059875|gb|ADB70814.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
          Length = 169

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 33/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E         F Y T        + V +             + ++   +FG+E  
Sbjct: 61  YDSLDEFFEKNEGGEFYYIT-----KFGRHVYSDINY-------SDTNKDYFFVFGKETT 108

Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL       NEE       +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 151


>gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989]
 gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989]
 gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
          Length = 229

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGRGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|125718574|ref|YP_001035707.1| rRNA methylase [Streptococcus sanguinis SK36]
 gi|125498491|gb|ABN45157.1| RRNA methylase, putative [Streptococcus sanguinis SK36]
          Length = 184

 Score = 71.6 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +                +++     +   E   +  +   +FGRE  GL  
Sbjct: 79  ESLDDFMEQMD-----------GQLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
 gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
          Length = 180

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 14/165 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      ++IL + +   NIG V R    F + ++ L       P+++   ++  A   +
Sbjct: 19  KAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTALGATDSV 78

Query: 69  DSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIF 125
               V + L   E + +           +  +   +   E + +LN+   +G Q   IIF
Sbjct: 79  AWEYVENTLSVVEKLKE-----------QGVYIISIEQAENSTMLNDFQSNGKQKYAIIF 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+  E ++ S+ +I  P      SLNIS +  + +WE   
Sbjct: 128 GNEVKGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAM 172


>gi|149194269|ref|ZP_01871366.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus
           TB-2]
 gi|149135444|gb|EDM23923.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus
           TB-2]
          Length = 153

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L +PQ+  N G + R   N    +L +V P     S+KA   +       D +  +V+
Sbjct: 4   IVLFNPQIPPNTGNIGRLCVNAG-AKLHIVKPIGFDISQKAVKRA--GLDYWDKLDLKVW 60

Query: 75  SNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +++E + ++      +ATT            P        ++   G     IFG E  G
Sbjct: 61  ESVEEFLKNVDTNRCFFATTKTK--------TP-----YFEKKYKKGDY--FIFGSETKG 105

Query: 132 LTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +       I+ P+     SLN++ +  ++++E +  
Sbjct: 106 IDEKILNQYKENNITIPMTNEGRSLNLAVSCGIILYEAIRQ 146


>gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 249

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR         + + +      +  A  +SA A
Sbjct: 82  PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 141

Query: 65  DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +   R   + + +K  + D  F I A T              E       +      
Sbjct: 142 LHTLPVCREQNLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 186

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V II G E  G+  E ++L +  I  P+     SLN+S A  ++++E ++    + +K  
Sbjct: 187 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 246


>gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
           PC510]
 gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
           PC510]
          Length = 255

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR         + + +      +  A  +SA A
Sbjct: 88  PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 147

Query: 65  DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +   R   + + +K  + D  F I A T              E       +      
Sbjct: 148 LHTLPVCREQNLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 192

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V II G E  G+  E ++L +  I  P+     SLN+S A  ++++E ++    + +K  
Sbjct: 193 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252


>gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_33FAA]
 gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_33FAA]
          Length = 249

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR         + + +      +  A  +SA A
Sbjct: 82  PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 141

Query: 65  DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +   R   + + +K  + D  F I A T              E       +      
Sbjct: 142 LHTLPVCREQSLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 186

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V II G E  G+  E ++L +  I  P+     SLN+S A  ++++E ++    + +K  
Sbjct: 187 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 246


>gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
 gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
 gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
 gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 255

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR         + + +      +  A  +SA A
Sbjct: 88  PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 147

Query: 65  DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +   R   + + +K  + D  F I A T              E       +      
Sbjct: 148 LHTLPVCREQSLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 192

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V II G E  G+  E ++L +  I  P+     SLN+S A  ++++E ++    + +K  
Sbjct: 193 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252


>gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
          Length = 255

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR         + + +      +  A  +SA A
Sbjct: 88  PFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGADAIIIPSKNSVSVNADAMKTSAGA 147

Query: 65  DCVIDSVR---VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +   R   + + +K  + D  F I A T              E       +      
Sbjct: 148 LHTLPVCREQNLTNTIK-YLKDCGFKIVAAT--------------EKGDYDYTKANYKDP 192

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V II G E  G+  E ++L +  I  P+     SLN+S A  ++++E ++    + +K  
Sbjct: 193 VCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQRGFTEDKTA 252


>gi|37528643|ref|NP_931988.1| hypothetical protein plu4834 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788082|emb|CAE17206.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 162

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        +++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               + +     A++AR        L  K           +G    ++FG E  GL    
Sbjct: 63  YFAFLENEGLTGASSARL-----FALTTKGTPAHSAVSYQAGDY--LMFGPETRGLPPYV 115

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+     S+N+S +V ++V+E    
Sbjct: 116 LDNMPPQQKIRIPMLANSRSMNLSNSVAVVVFEAWRQ 152


>gi|330987193|gb|EGH85296.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 151

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L    E I +      TT  +R    +   P +                 +FG E  G
Sbjct: 61  PDLASCMEKIGNPRLFAFTTKGSRPFHDASFEPDD---------------AFLFGPESRG 105

Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +  LS+   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
 gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
          Length = 182

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 12/171 (7%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P +++L D +   N+G V R+   F +  + L       P+ +   ++   
Sbjct: 15  EEFKEAEKLPLIVVLDDVRSLYNVGSVFRSADAFRIEAIYLCGITATPPNAEIHKTALGG 74

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +  +D  + F   ++A+ DLH    F+Y  +     +   +      A    E   +  +
Sbjct: 75  EDSVDW-KYFERTEDAVEDLHKKGVFVY--SVEQVEHSTKLHTLDLNA----ESTTNNSH 127

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             II G E  G+    + +S+A +  P      SLN+S    +++WE  + 
Sbjct: 128 YAIIMGNEVKGVKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIWEFAKQ 178


>gi|256025663|ref|ZP_05439528.1| putative tRNA/rRNA methyltransferase YibK [Escherichia sp. 4_1_40B]
          Length = 157

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 35/167 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPIGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++        E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 101 PETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|222640835|gb|EEE68967.1| hypothetical protein OsJ_27872 [Oryza sativa Japonica Group]
          Length = 254

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 20/180 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV P +  N G +AR      +  L LV P      +     +         V  ++ 
Sbjct: 75  VVLVSPLIPGNTGSIARTCAASAVG-LHLVGPLGFKVDDTKLKRA--GLDYWPYVVVKIH 131

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  E   D           ++  K +LA  +    ++          ++FG E  GL  
Sbjct: 132 DSWNE-FRDYFM-------KQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQ 183

Query: 135 EEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
             +   +        I  P+   +   LN+S +V + ++E              E    A
Sbjct: 184 SALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLHYQPELPEEA 243


>gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803]
 gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955
 gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803]
          Length = 384

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 19/174 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             S    +II+       N+G + R    F    + L   R    +      +A A    
Sbjct: 212 SQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVAGITSTVMKVAAGALEHF 271

Query: 69  DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              RV  NL  A+  L     +IY T A  +               L E       +G++
Sbjct: 272 PVARVV-NLSRALETLKESGFWIYGTVAGKQTALHQ--------ADLRE------PMGLV 316

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            G E  GL+       + +I+ P+    PSLN S A  + ++E           
Sbjct: 317 IGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAAISLYEIFRQRGFDRPT 370


>gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8802]
 gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8801]
 gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8802]
          Length = 292

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 24/178 (13%)

Query: 6   PQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            Q + S+  PVI++       +N+G + R         L +   R    +      +A A
Sbjct: 129 EQAKASSNEPVIVIADGIADPQNLGAIIRTAEALGTQGLVIPQRRAAGVTSTVIKVAAGA 188

Query: 65  DCVIDSVRVF------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                  RV         LKEA     +IY T A    +  ++         L       
Sbjct: 189 LESFPVARVVNLSRALETLKEA---GFWIYGTAATGGKSLHNM--------ELR------ 231

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +G++ G E  GL+       + +IS P+    PSLN S A  ++++E         
Sbjct: 232 GPIGLVIGSEESGLSLLTERCCDQLISIPLTGKTPSLNASVAAAIVLYEVYRQRWSEK 289


>gi|62182189|ref|YP_218606.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616772|ref|YP_001590737.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549059|ref|ZP_02342818.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168241872|ref|ZP_02666804.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194451947|ref|YP_002047725.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|198243676|ref|YP_002217657.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205354702|ref|YP_002228503.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858932|ref|YP_002245583.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585496|ref|YP_002639295.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62129822|gb|AAX67525.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161366136|gb|ABX69904.1| hypothetical protein SPAB_04591 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194410251|gb|ACF70470.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197938192|gb|ACH75525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205274483|emb|CAR39516.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325796|gb|EDZ13635.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205338875|gb|EDZ25639.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|206710735|emb|CAR35096.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224470024|gb|ACN47854.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322716677|gb|EFZ08248.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326625441|gb|EGE31786.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629841|gb|EGE36184.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 157

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A         L  K            G    ++FG E  GL    
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190]
 gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579]
 gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902]
 gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           NZ-05/33]
          Length = 261

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  ++L   Q   N+G V R+     +  + L        S K   +   A  +     
Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFL---SG 167

Query: 73  VFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++   +L+  +A     ++AT  R           +E   VL      G     +FG E 
Sbjct: 168 IYPQADLEIWLARYKGRVFATALR-----------EEKQAVLYGEDLCG-PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|242080019|ref|XP_002444778.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
 gi|241941128|gb|EES14273.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
          Length = 257

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 20/190 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++  + +   ++LV P +  N G +AR      +  L LV P      +     +     
Sbjct: 68  EVARARRMLHVVLVSPLIPGNTGSIARTCAASAVG-LHLVGPLGYKVDDTKLKRA--GLD 124

Query: 67  VIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
               V  ++  +         +        +   K +LA  +    ++          ++
Sbjct: 125 YWPYVVVKIHDSWD---HFFDYFM-----KQEGDKRLLAFTKRGTQIHSDFSYRPGDWLV 176

Query: 125 FGRERWGLTNEEIALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSE 177
           FG E  GL  + +            +  P+   +   LN+S +V + ++E          
Sbjct: 177 FGSETKGLPQQALEDCCREGLGGGTLRIPMVETYVRCLNLSVSVGIALYEAARQLNYEQL 236

Query: 178 KNVKEQNTPA 187
           +   E    A
Sbjct: 237 QYQPELPEEA 246


>gi|213971171|ref|ZP_03399289.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato T1]
 gi|301382299|ref|ZP_07230717.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058530|ref|ZP_07250071.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato K40]
 gi|302132197|ref|ZP_07258187.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213924040|gb|EEB57617.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato T1]
          Length = 151

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L    E I +      TT  +R    +   P +                 +FG E  G
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKGSRPFHDASFTPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +  LS+   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|206577394|ref|YP_002235981.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
 gi|206566452|gb|ACI08228.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
          Length = 229

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS + R+ ++ A        V+    + +A+ 
Sbjct: 30  PHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAAGSNSWVQVKTHRTIADAVG 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + AI   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDKAIDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +          P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPEEQQRLLF 188


>gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 180

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++      IIL D +   N+G V R    F L  L L       P      ++  A+  +
Sbjct: 19  ESPKLPIRIILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPDIHKTALGAEDSV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIF 125
                FS++ +AI +L          +    S+ A ++A   L+   FS   G    +IF
Sbjct: 79  KW-EYFSSVVDAIEEL----------KAKGYSICAIEQAEGSLSLENFSPSKGTRYALIF 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G E  G+  E I L +  +  P      SLN+S    +++W+
Sbjct: 128 GNEVKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIWQ 169


>gi|229551723|ref|ZP_04440448.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258507873|ref|YP_003170624.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|258539119|ref|YP_003173618.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus
           Lc 705]
 gi|229314928|gb|EEN80901.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257147800|emb|CAR86773.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           rhamnosus GG]
 gi|257150795|emb|CAR89767.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           rhamnosus Lc 705]
 gi|259649200|dbj|BAI41362.1| putative rRNA methyltransferase [Lactobacillus rhamnosus GG]
          Length = 169

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 20/171 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L +P +  N G +AR     N + L L+ P      +K    +         VR+   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWAKVRIVYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +A        T ++  +   +    +      +   +  +   +FG+E  GL  
Sbjct: 62  DSLDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPE 113

Query: 135 ----EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               E        +  P+     +LN+S    L+V+E +     +  + V 
Sbjct: 114 GFMREHEDQC---LRIPMTANVRALNLSNCAALVVYEALRQQHFAGLETVH 161


>gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus
           succinogenes 130Z]
          Length = 245

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 62/174 (35%), Gaps = 24/174 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L       +++L       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LNGKPNPLLLVLDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            V+  +RV +NL   + D+      ++  T                 A     +     +
Sbjct: 147 EVLPLIRV-TNLARTLRDIQQSHNIWVVGTAG--------------EASETLYQTELTGS 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + 
Sbjct: 192 LALVMGAEGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLA 245


>gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240149]
          Length = 261

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  +   
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFL--- 165

Query: 71  VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             ++   +L+  +A     ++AT  R           +E   VL      G     +FG 
Sbjct: 166 SGIYPQADLEIWLARYKGRVFATALR-----------EEKQAVLYGEDLCG-PTAWVFGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|311277429|ref|YP_003939660.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
 gi|308746624|gb|ADO46376.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
          Length = 229

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ +  A       SV+    + +A+A
Sbjct: 30  PHNVSAIVRTADAVGVHEVHAV-----WPGNRMRTMASTAAGSNSWVSVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          ++A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  QL--------KGRGMQILATHLSDSAVDFRE-IDYTRPTCILMGQEKTGITEEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++   ++E +T   + +     +
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYLRENSTLPQEEQQRLLFE 189


>gi|306824493|ref|ZP_07457839.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433280|gb|EFM36250.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 167

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 66/161 (40%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIHFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ ++ +                +++     +     + + +    +FGRE  GL  
Sbjct: 62  DSLEDFMSQM-----------KGKLYLISKFAEKVYSEADLSTDEAHYFLFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
 gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
          Length = 229

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            L          +     +L     + A+   E I   +   I+ G+E+ G+T E +AL+
Sbjct: 85  HL----------KGQGMQILTTHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALA 133

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           +  I  P+  +  SLN+S A  L+++E       +     +    P T+ + L F
Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPETEQQRLLF 188


>gi|53724519|ref|YP_104677.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|67640730|ref|ZP_00439526.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           GB8 horse 4]
 gi|76811046|ref|YP_332082.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|121598583|ref|YP_991525.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124386186|ref|YP_001027401.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126450821|ref|YP_001082366.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|167001964|ref|ZP_02267754.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           PRL-20]
 gi|167717915|ref|ZP_02401151.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei DM98]
 gi|167736934|ref|ZP_02409708.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 14]
 gi|167822559|ref|ZP_02454030.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 9]
 gi|167844142|ref|ZP_02469650.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei B7210]
 gi|167892647|ref|ZP_02480049.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 7894]
 gi|167909362|ref|ZP_02496453.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 112]
 gi|167917391|ref|ZP_02504482.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei BCC215]
 gi|217420146|ref|ZP_03451652.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 576]
 gi|226193732|ref|ZP_03789335.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|254174655|ref|ZP_04881316.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 10399]
 gi|254187876|ref|ZP_04894388.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254201771|ref|ZP_04908135.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           FMH]
 gi|254207104|ref|ZP_04913455.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           JHU]
 gi|254259607|ref|ZP_04950661.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710a]
 gi|254296007|ref|ZP_04963464.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 406e]
 gi|254357588|ref|ZP_04973862.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           2002721280]
 gi|313471793|sp|A3NR15|TRML_BURP0 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|52427942|gb|AAU48535.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 23344]
 gi|76580499|gb|ABA49974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710b]
 gi|121227393|gb|ABM49911.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           SAVP1]
 gi|124294206|gb|ABN03475.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           NCTC 10229]
 gi|126243691|gb|ABO06784.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           NCTC 10247]
 gi|147747665|gb|EDK54741.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           FMH]
 gi|147752646|gb|EDK59712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           JHU]
 gi|148026652|gb|EDK84737.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           2002721280]
 gi|157805768|gb|EDO82938.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 406e]
 gi|157935556|gb|EDO91226.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160695700|gb|EDP85670.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 10399]
 gi|217397450|gb|EEC37466.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 576]
 gi|225934310|gb|EEH30294.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|238521501|gb|EEP84952.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           GB8 horse 4]
 gi|243062290|gb|EES44476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           PRL-20]
 gi|254218296|gb|EET07680.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710a]
          Length = 156

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +A    D   ++A T R    F              +R F   +   +FG E  G
Sbjct: 62  DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L    +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 108 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|16766980|ref|NP_462595.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167994314|ref|ZP_02575406.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232538|ref|ZP_02657596.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235302|ref|ZP_02660360.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168260552|ref|ZP_02682525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464999|ref|ZP_02698891.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168818477|ref|ZP_02830477.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194442768|ref|YP_002042944.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194471131|ref|ZP_03077115.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734332|ref|YP_002116632.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197261958|ref|ZP_03162032.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200387243|ref|ZP_03213855.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204928821|ref|ZP_03220020.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|238910270|ref|ZP_04654107.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422261|gb|AAL22554.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194401431|gb|ACF61653.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194457495|gb|EDX46334.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709834|gb|ACF89055.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195632281|gb|EDX50765.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197240213|gb|EDY22833.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197291549|gb|EDY30901.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199604341|gb|EDZ02886.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204322254|gb|EDZ07452.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205327781|gb|EDZ14545.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333200|gb|EDZ19964.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344663|gb|EDZ31427.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205350496|gb|EDZ37127.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261248843|emb|CBG26696.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995953|gb|ACY90838.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160231|emb|CBW19753.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914721|dbj|BAJ38695.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088113|emb|CBY97875.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226748|gb|EFX51798.1| tRNA cytosine34-2'-O--methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322612864|gb|EFY09816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618929|gb|EFY15816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625294|gb|EFY22121.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322630039|gb|EFY26812.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634230|gb|EFY30965.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635869|gb|EFY32578.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643045|gb|EFY39621.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643828|gb|EFY40377.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649822|gb|EFY46245.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653028|gb|EFY49363.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661153|gb|EFY57381.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662358|gb|EFY58571.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667236|gb|EFY63402.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674387|gb|EFY70480.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678405|gb|EFY74466.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680911|gb|EFY76945.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687153|gb|EFY83126.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323132055|gb|ADX19485.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192113|gb|EFZ77346.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198204|gb|EFZ83311.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200824|gb|EFZ85894.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206578|gb|EFZ91536.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210509|gb|EFZ95395.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216203|gb|EGA00931.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220426|gb|EGA04880.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225289|gb|EGA09523.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228403|gb|EGA12534.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234224|gb|EGA18312.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237209|gb|EGA21276.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244728|gb|EGA28732.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249209|gb|EGA33127.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250920|gb|EGA34796.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256718|gb|EGA40446.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262256|gb|EGA45817.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264533|gb|EGA48037.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268823|gb|EGA52281.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332990544|gb|AEF09527.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 157

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A         L  K            G    ++FG E  GL    
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 247

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 14/171 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L       ++IL       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LSQKKNPLLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTPTARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V+  +RV +NL   + DL          R+N   V    EA   + E   +G ++ ++ 
Sbjct: 147 EVMPLIRV-TNLARTMRDLQ--------ERHNVWIVGTAGEAESGIYEAKLTG-SIALVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  G+        + +IS P+     SLN+S A  + ++E +   +   
Sbjct: 197 GAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAGQ 247


>gi|302672183|ref|YP_003832143.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396656|gb|ADL35561.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 166

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 28/174 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74
           I+L  P++ +N G + R       T L L+ P      EK    +   D    +D  R  
Sbjct: 3   IVLHQPEIPQNTGNIGRTCVATG-TSLHLIEPLGFRLGEKDLKRA-GMDYWQHLDVTRYV 60

Query: 75  S--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +  E         ATT                A      +  G +  I+FG+E  G+
Sbjct: 61  DYQDFLEKHPGAKIWMATT---------------KAKKCYTDVQFGMDDFIMFGKESAGI 105

Query: 133 TNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             E +          I  P+     SLN+S +V ++++E +  +  +  +   E
Sbjct: 106 PEEILVDNEENC---IRIPMGSDIRSLNLSNSVAIVLYEALRQNNFAGLEQQGE 156


>gi|297537769|ref|YP_003673538.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297257116|gb|ADI28961.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera sp. 301]
          Length = 154

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N     L LV P      +K    +        +++V  N
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGAA-LHLVKPLGFSLDDKQLKRAGLDYHEYSTMQVHEN 62

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +   A L     F   T    R+               +E  F  ++V  +FG E  GL
Sbjct: 63  WEACKASLTGKRLFAITTKGSTRH---------------SEIQFKAEDV-FVFGPETRGL 106

Query: 133 TNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             EEI     +   +  P+ P   SLN+S +  ++++E    
Sbjct: 107 P-EEIRAEFTAEHRLRLPMLPDSRSLNLSNSAAVLLYEAWRQ 147


>gi|237728908|ref|ZP_04559389.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909530|gb|EEH95448.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 157

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D    +  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +    +  A  A         L  K            G    ++FG E  GL    
Sbjct: 54  FTAVLRHPDYA-AFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWHQ 147


>gi|126439427|ref|YP_001057538.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|237810689|ref|YP_002895140.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei MSHR346]
 gi|126218920|gb|ABN82426.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 668]
 gi|237504756|gb|ACQ97074.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei MSHR346]
          Length = 179

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 27  VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 84

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +A    D   ++A T R    F              +R F   +   +FG E  G
Sbjct: 85  DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 130

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L    +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 131 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 173


>gi|116749122|ref|YP_845809.1| tRNA/rRNA methyltransferase SpoU [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698186|gb|ABK17374.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobacter fumaroxidans
           MPOB]
          Length = 164

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L  P++ +N G +AR       T L LV P     +++    +         VR  V 
Sbjct: 12  VVLYQPEIPQNTGNIARTCAAT-HTPLHLVEPLGFRITDRGLKRA--GLDYWPHVRLKVH 68

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+    ++           +      +        + R   G    + FG E +GL N
Sbjct: 69  PDLESLCREI----------GDRRWVYFSAHADRRYCDFRFQPGD--CLFFGSESFGLPN 116

Query: 135 EEI-ALSNAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171
           + + +    +I+ P+N     SLN++ +V + ++E +  
Sbjct: 117 DLLVSRPGFVINIPINRARVRSLNLATSVGIALFEALRQ 155


>gi|70726108|ref|YP_253022.1| hypothetical protein SH1107 [Staphylococcus haemolyticus JCSC1435]
 gi|68446832|dbj|BAE04416.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 156

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +       + V + 
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV--GIIFGRERWGL 132
               ++I D  F  AT        +  L  K      ++  FS ++     IFGRE  GL
Sbjct: 59  -TYHDSIED--FFDAT------QGEYYLLTKFGKQTYSDFDFSKEDTDYYFIFGRETTGL 109

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      ++  +  P++    SLN+S    L+++E +   
Sbjct: 110 PDWVKDKYADTALRIPMSENIRSLNLSNTAALLIYEALRQQ 150


>gi|295095239|emb|CBK84329.1| rRNA methylases [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ +  A       SV+    + EA++
Sbjct: 30  PHNVSAIVRTADAVGVHEVHAV-----WPGARMRTMASTAAGSNSWVSVKTHQTIGEAVS 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R            A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQVLATNLSAKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +          P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERSNSMLPEEEQQRLLF 188


>gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis
           JLW8]
          Length = 250

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 29/178 (16%)

Query: 8   LQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           L++    P    IL   +   N+G   R      +    ++ P+D     +   R  +  
Sbjct: 91  LESDLSEPAFFLILDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAAGLNATVRKVACG 148

Query: 64  ADC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           A        V +  R    LKEA     F+  TT    ++  ++L  K            
Sbjct: 149 AAETVPFIAVTNLARTIRELKEA---GVFVVGTTM---DSPSTLLNTKLNGP-------- 194

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              + ++ G E  G+        +A+++ P+     SLN+S A  + ++E      ++
Sbjct: 195 ---IALVLGAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLYEVRRQRSLA 249


>gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 290

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R    F +  + +   R    +     SS  A   +   RV +
Sbjct: 143 IVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARV-T 201

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL   I +L     ++Y T  R                  + +   G    II G E  G
Sbjct: 202 NLNSVIDELKEKGIWVYGTDIRAEEY--------------SYQTDFGGPCAIIIGNEGKG 247

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++   +   + +I  P+     SLN S A  ++++E ++  +
Sbjct: 248 ISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRL 289


>gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 290

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R    F +  + +   R    +     SS  A   +   RV +
Sbjct: 143 IVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARV-T 201

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL   I +L     ++Y T  R                  + +   G    II G E  G
Sbjct: 202 NLNSVIDELKEKGIWVYGTDIRAEEY--------------SYQTDFGGPCAIIIGNEGKG 247

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++   +   + +I  P+     SLN S A  ++++E ++  +
Sbjct: 248 ISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRL 289


>gi|325479544|gb|EGC82640.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 152

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L+ P+   N+G + R       ++L L+ P     S++    +       + V   + 
Sbjct: 4   IVLIAPEHPGNVGNIGRTCVLTE-SRLHLIRPFKFDFSDRFLKRA--GIDYWEHVDLVIH 60

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +++E    I D  F +  T  ++                      G    +IFGRE+ G
Sbjct: 61  DSIEEFMEYIKDKRFFFVETGSDKRYTDV-------------SFKDGDY--LIFGREKEG 105

Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
           +  + +   S  +I+ P+      SLN++ +V ++++E +  
Sbjct: 106 IDQKLLDEYSKQVITIPMTKKIDRSLNLANSVSIILYEALRQ 147


>gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 206

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 20/196 (10%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + +++ K P +++L D +   N+G V R    F +  + L       P+ +   ++ 
Sbjct: 13  SVEEFKDAPKLPLIVVLDDVRSLYNVGSVFRTCDAFRVEAVYLCGITGTPPNAEIHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIY------ATTA----RNRNNFKS---VLAPK 105
             +  +D  R F   ++A+ +LH    F+Y       +T      N         +    
Sbjct: 73  GGEDSVDW-RYFEKTEDAVQELHDRGYFVYSIEQVEGSTKLFELGNSKFTIHNSKLADAV 131

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + AI  N +  S     +IFG E  G+    + +S+  +  P      SLN+S    ++V
Sbjct: 132 DTAIE-NRQSESIFPCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVV 190

Query: 166 WECMENSIVSSEKNVK 181
           WE  +  +    ++ +
Sbjct: 191 WEFAKMKLAKQPQHQQ 206


>gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 297

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 12/164 (7%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G +++L      +NIG + R+   F +  L + +            ++A A   +   RV
Sbjct: 142 GVILMLDQVTDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVLAKTAAGAADRVPFARV 201

Query: 74  FS---NLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +   +L E + +  ++          N  ++LA +   I L + +       ++ G E 
Sbjct: 202 TNLSRSL-ELLGENGYVSVGLAGEGEFNLHTLLAQQGWGISLKKLV-------LVLGSEG 253

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            GL        + +   P+   F SLN+S A  + ++E +  + 
Sbjct: 254 EGLRRLVAEHCDHLARIPMPGGFESLNVSHAASISLYEALARTP 297


>gi|270292116|ref|ZP_06198331.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
 gi|270279644|gb|EFA25486.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
          Length = 180

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 70/172 (40%), Gaps = 24/172 (13%)

Query: 10  NSAKGPV----IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           N  + P+    I+L +PQ+ +N G +AR     N + L ++ P      ++    +    
Sbjct: 7   NDKRKPIMTNHIVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GL 63

Query: 66  CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              D + +  + NL + ++ +                +++     +     + + ++   
Sbjct: 64  DYWDKLEIHFYDNLADFMSQM-----------KEKLYLISKFAEKVYSEADLSTDEDHYF 112

Query: 124 IFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +FGRE  GL  E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 113 LFGREDKGLP-EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|256545227|ref|ZP_05472592.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
 gi|256399054|gb|EEU12666.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
          Length = 156

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 68/159 (42%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L+ P+   N+G ++R       ++L L+ P     S+K+   +       D +   V 
Sbjct: 4   IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSDKSLKKA--GIDYWDKLDLVVH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +++E +  ++             K++   +  +      I       +IFGRE+ G+  
Sbjct: 61  DSMEEFLEYIN------------GKNIYLIETGSDKNYADISYKDGDYLIFGREKEGIDK 108

Query: 135 EEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
           + I    + + + P+      SLN++ +V ++++E +  
Sbjct: 109 KIIEKFKDRVYTIPMTKNMDRSLNLANSVAIVLYEGLRQ 147


>gi|283836029|ref|ZP_06355770.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291068213|gb|EFE06322.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 229

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ +++A        V+    + +A+ 
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASSAAGSNSWVQVKTHPTISDAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  +++          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 84  -------TQLKSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRENSMLPEDEQQRLLF 188


>gi|317495249|ref|ZP_07953619.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914671|gb|EFV36147.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 157

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 36/170 (21%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++  N G +AR     N   T+L L+ P      +K    +       + +   
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTN---TRLHLIRPLGFSIDDKHVKRA--GLDYWEHLDLI 58

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------QNVGII 124
           V+ +  E +       AT+ +N                  ++I+S         + +  I
Sbjct: 59  VWDSFDEFLE------ATSDKNYYLI----------TKFGQKIYSDFDFSNKNDEEIYFI 102

Query: 125 FGRERWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           FGRE  GL  E  E   S   +  P++    SLN+S    L+++E +   
Sbjct: 103 FGRETKGLPKEFRE-KYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQ 151


>gi|218885937|ref|YP_002435258.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756891|gb|ACL07790.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 152

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 20/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L  P++  N G VAR       TQL L+ P  G+  +      A  D     ++ V+ 
Sbjct: 3   IVLYHPEIPPNTGNVARLCAAT-RTQLHLIEPL-GFSLDDRYLKRAGLDYWPHVNLSVWP 60

Query: 76  NLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + +  +        +  T+AR              A     R    +   ++FG E  GL
Sbjct: 61  DWQAYLDGPGSERRLVMTSAR--------------AGAAVHRFDFTERDALVFGPETTGL 106

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             E +  +   +  P+     SLN+S A  +++++ + ++  
Sbjct: 107 PAEVLDATPHHVRIPIWGEVRSLNLSTATGIVLYQALAHTGA 148


>gi|308188674|ref|YP_003932805.1| RNA methylase [Pantoea vagans C9-1]
 gi|308059184|gb|ADO11356.1| putative RNA methylase [Pantoea vagans C9-1]
          Length = 232

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 24/158 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS++ R  +S++        V     + +A+ 
Sbjct: 30  PHNVSAVIRTADAVGIHEVHAV-----WPSQRMRTQASASAGSNSWVKVVTHPTIGDAVK 84

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      + AT     +     +  +E    L           I+ G+E+ G+T E +A
Sbjct: 85  QLKQQKMQVLAT-----HLSDDAVDFREIDYTL--------PTCILMGQEKTGITEEALA 131

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L++  I  P+  +  SLN+S A  L+++E       + 
Sbjct: 132 LADRKIVIPMVGMVQSLNVSVACALILYEAQRQRQNAG 169


>gi|225569887|ref|ZP_03778912.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM
           15053]
 gi|225161357|gb|EEG73976.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM
           15053]
          Length = 163

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 30/164 (18%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+L +P++  N G + R     N    +L L+ P     +EK    +       D + V 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVAAN---ARLHLIEPLGFRLNEKNLRRA--GMDYWDELDVT 58

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F    E         ATT                A  +   +    +  I+FG+E 
Sbjct: 59  TYIDFDEFLEKNEGARIYMATT---------------KAPNVYTDVRYEPDCYIMFGKES 103

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  EEI + +    I  P+     SLN+  +V ++++E +  
Sbjct: 104 AGIP-EEILVKHKEDSIRIPMAGDIRSLNLGNSVAIILYEALRQ 146


>gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 246

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 16/169 (9%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  + K P I +L       N G +AR      +  + +        +  A  +SA A
Sbjct: 87  PFLYENGKDPFILVLDGITDVRNFGAIARTCEVAGVNAIVIPAKGSVTVNADAVKTSAGA 146

Query: 65  DCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  + V    NL  AI  L          RN+   V+A  E    +   I     + 
Sbjct: 147 ---LLKIPVCKEPNLTSAIQFL----------RNSGIKVVAASERGADIYTEIDYTGPIA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + G E  G+ NE + +++ ++  P      SLN+S A  ++++E +  
Sbjct: 194 FVMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIRQ 242


>gi|317494747|ref|ZP_07953159.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917349|gb|EFV38696.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 157

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L L+ P      +K    +      +D    F+ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-KLHLIEPLGFTWDDKRLRRAG-----LDYHE-FAT 56

Query: 77  LK-----EAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           LK     +A  D      ++A T +          P  +A+       +G    ++FG E
Sbjct: 57  LKKHHDYQAFLDSEQPERLFALTTKG--------TPAHSAV----SYQAGDY--LVFGPE 102

Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 103 TRGLPAYILDALPAQQKIRIPMLASSRSMNLSNAVSVVVYEAWRQ 147


>gi|260188421|ref|ZP_05765895.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
 gi|289449064|ref|ZP_06438808.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
 gi|289422022|gb|EFD19223.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
          Length = 154

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
            V P++  N G   R        +L LV P     SE     +      + SV V ++L 
Sbjct: 6   FVSPRIAPNTGNAIRTCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLA 64

Query: 79  ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              EA++    ++A TA               A  L   +       ++FG E  GL  +
Sbjct: 65  HAWEALSP-ARVFAFTA--------------QATTLFTNVGYRAGDVLMFGPEPTGL--D 107

Query: 136 EIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  L++  I+     P+     SLN+S A  + V+E       +  
Sbjct: 108 EATLADTHITGQVRIPMLAGRRSLNLSNAATVAVYEAWRQHGFAGA 153


>gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1]
          Length = 229

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P T+ + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPETEQQRLLF 188


>gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 229

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        ++R          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KSRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|56461530|ref|YP_156811.1| rRNA/tRNA methylase [Idiomarina loihiensis L2TR]
 gi|56180540|gb|AAV83262.1| Predicted rRNA/tRNA methylase, SpoU family [Idiomarina loihiensis
           L2TR]
          Length = 154

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 19/165 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L +P++  N G V R   N  ++ L L+ P      EK    +      + SV +  + 
Sbjct: 5   VLFEPEIPPNTGNVIRLAANTGMS-LHLIEPLGFELDEKKVRRAGLDYHDLASVNIHKDW 63

Query: 78  KEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +  +    F  I+A T + + N+ +V              +   +V ++FG E  GL  E
Sbjct: 64  QSFLNSTSFNRIFACTTKGKTNYSAV-------------AYEAGDV-LLFGPETRGLPME 109

Query: 136 EIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +        +  P+     SLN+S +V +  +E    +  +  +
Sbjct: 110 VLETFPQENWLRLPMADTSRSLNLSNSVAIFAYEAWRQNDFTGAR 154


>gi|224476913|ref|YP_002634519.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421520|emb|CAL28334.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 156

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 36/169 (21%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           ++L  P++  N G +AR     N   T L L+ P      +K    +       + V + 
Sbjct: 5   VVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNIT 59

Query: 74  -FSNLKEAIA--DLHF-----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            + N+++     D H+       +TT  + +                      ++   +F
Sbjct: 60  YYENIEQFFDQTDGHYYLITKFGSTTFTDFDYSNP-----------------EEDHYFVF 102

Query: 126 GRERWGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GRE  GL +  +E    +  +  P+N    SLN+S    ++V+E +   
Sbjct: 103 GRETTGLPDWVKEKYH-DTALRIPMNDHIRSLNLSNTAAILVYEALRQQ 150


>gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           haemolytica PHL213]
 gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           haemolytica PHL213]
          Length = 247

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 14/171 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L       ++IL       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LSQKKNPLLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTPTARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V+  +RV +NL   + DL          R+N   V    EA   + E   +G ++ ++ 
Sbjct: 147 EVMPLIRV-TNLARTMRDLQ--------ERHNVWIVGTAGEAESGIYEAKLTG-SIALVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  G+        + +IS P+     SLN+S A  + ++E +   +   
Sbjct: 197 GAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAGQ 247


>gi|152980476|ref|YP_001354860.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151280553|gb|ABR88963.1| RNA methyltransferase, TrmH family, group 2 [Janthinobacterium sp.
           Marseille]
          Length = 165

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 25/172 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++  N G + R   N    QL LV P  G+P + A+   A      D    +V 
Sbjct: 9   VVLVEPEIPPNTGNIIRLCANTG-AQLHLVEPL-GFPLDDAKMRRAG-LDYHDYAQMKVH 65

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV------LNERIFSGQNVGIIFGRE 128
           ++ +  +                 + +   +  A+            F   +V  +FG E
Sbjct: 66  ADWQAFLNSF-----------PAEQPLNHERMFALTTHGSTPFASMAFQPGDV-FVFGSE 113

Query: 129 RWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             GL     E    +  I  P+ P   SLN+S  V ++V+E    +  +  +
Sbjct: 114 TKGLETSLRESFPPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQNNFAGGQ 165


>gi|53718088|ref|YP_107074.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
           K96243]
 gi|167814039|ref|ZP_02445719.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 91]
 gi|167901142|ref|ZP_02488347.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei NCTC 13177]
 gi|254181943|ref|ZP_04888540.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1655]
 gi|254196458|ref|ZP_04902882.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei S13]
 gi|52208502|emb|CAH34437.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
           K96243]
 gi|169653201|gb|EDS85894.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei S13]
 gi|184212481|gb|EDU09524.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1655]
          Length = 156

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    +A    D   ++A T R    F      P +                 +FG E  
Sbjct: 62  DWDAFVAAEAPDPARMFAFTTRGSGRFHDRSFEPGDW---------------FVFGAETR 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL    +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 107 GLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 150


>gi|47458956|ref|YP_015818.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458284|gb|AAT27607.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 173

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L  P++  N G + R        +L ++ P       K    SA A  +++ +   V+
Sbjct: 4   IVLFQPEIPPNTGNIIRTCKAT-QAKLHIIKPIAFDLDPKYLKRSA-AGWILEDIEHEVY 61

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG- 131
               + +       IY  T   + N+  V           ++  +  ++ ++FG E  G 
Sbjct: 62  ETYDDFLKKHSEKSIYYLTRYGKINYSDVNF---------KKYQNNDDLFVMFGTESTGI 112

Query: 132 ----LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               L N  +      +  P++    SLN++  V L+ +E     
Sbjct: 113 PKKILKNN-LENC---LRIPMDKDMRSLNLANTVFLIAYEIQRQW 153


>gi|307719616|ref|YP_003875148.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
           6192]
 gi|306533341|gb|ADN02875.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
           6192]
          Length = 154

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           ++L +P++ +N G +AR         L L+ P  G+  E      A  D   +  +RV S
Sbjct: 5   VVLHEPEIPQNTGNIARTCAATG-AILHLIEPL-GFSLEDRYLRRAGLDYWPMVDLRVHS 62

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +  + +     ++  + R    +     P E                ++FG+E  GL 
Sbjct: 63  SWEAFLEEERPSSLFLLSTRGTRPYHVCEFPDE--------------TYLVFGKETAGLP 108

Query: 134 NEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              +    + ++  P+     SLN+S AV ++V+  +       
Sbjct: 109 ARILEAFPDRVVRIPMREGARSLNLSNAVAILVYAALRGQGFPG 152


>gi|302843184|ref|XP_002953134.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
           nagariensis]
 gi|300261521|gb|EFJ45733.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
           nagariensis]
          Length = 182

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 23/172 (13%)

Query: 3   PYAPQLQNS---AKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
           P A    ++   A  P  I+   V  +   NIG + R+   F + ++ LV  R      +
Sbjct: 8   PAAEPCSSASGTAGPPCFIITHSVSKRH--NIGTIVRSATAFGVKEVCLVGSR------Q 59

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
             +  ++      + + F  L++ +  L  +       R     +    E A+ ++E  F
Sbjct: 60  FNTFGSHGSDAHVAFKHFDTLQQCVQHLKDVEGC----RVLGIEIC---EGALPVHEHPF 112

Query: 117 SGQ-NVGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVW 166
           +G      + G E  GL+  ++AL +  +  P + P   SLN++ A  +++ 
Sbjct: 113 TGSSPTAFLLGNEGQGLSERQMALCDGFVYIPQHGPGTASLNVAVAASIVLH 164


>gi|213964878|ref|ZP_03393077.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           amycolatum SK46]
 gi|213952414|gb|EEB63797.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           amycolatum SK46]
          Length = 179

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 23/159 (14%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P +  N G   R         L L  P      +K    +      +  VR+  ++ +A
Sbjct: 31  RPVIPPNTGNAIRMCAGSG-AMLHLAKPLGFNFDDKNLRRAGLDYHDLADVRIHDSIDQA 89

Query: 81  IA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +          I+A TA               A   +  I       ++FG E  GL   
Sbjct: 90  LETFASQGC-RIFAFTA--------------HADTWHTDIEYTNTDVLLFGPEPTGLEQS 134

Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +       +I  P+ P   S+N+S A  +  +E     
Sbjct: 135 VLDDPRITQLIRIPMLPARRSMNLSNAAAVAAYEVWRQQ 173


>gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
          Length = 295

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 9   QNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + ++  PVI++ +      N+G + R      ++ L L   R    +      +A A   
Sbjct: 138 KAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRRAVGITSTVMKVAAGALET 197

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               RV  NL  A+ +L     +IY T+A      + +   K +  V+           +
Sbjct: 198 FPVARVV-NLNRALEELKQAGFWIYGTSATA---DQPLYTVKFSGPVV-----------L 242

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  GLT       + ++S P+    PSLN+S A  + ++E     
Sbjct: 243 VVGSEGQGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALYEIYRQR 291


>gi|320528359|ref|ZP_08029521.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei
           F0204]
 gi|320131273|gb|EFW23841.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei
           F0204]
          Length = 171

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 69/168 (41%), Gaps = 15/168 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74
           ++L +P++ +N G + R     N  +L L+ P     ++K+   +   D V  +D  +++
Sbjct: 4   VVLYEPEIPQNTGNIMRTCMAMNC-RLHLIEPMGFKITDKSLKRA-GMDYVKELDY-KIY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + +                 + +      ++     N +   G+++ ++FG+E  G+  
Sbjct: 61  PDWQTFYN---------MHEGSYYYITRYGEKTPSEFNYKEDEGKDIYLVFGKESTGIDK 111

Query: 135 EEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             +    +  +  P+     SLN+S  V + V+E ++        + +
Sbjct: 112 HILHDNYDRCVRIPMVAQARSLNLSNCVAICVYEVLDQLGFPELSHTE 159


>gi|324111936|gb|EGC05916.1| RNA methyltransferase [Escherichia fergusonii B253]
          Length = 157

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +        +V    N
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHN 62

Query: 77  LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +   +   ++A T +          P  +A+        G    ++FG E  GL +
Sbjct: 63  YAAFLKAENPQRLFALTTKG--------TPAHSAV----SYQDGDY--LMFGPETRGLPS 108

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 109 SILDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 206

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 7   PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 62  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 112

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 165


>gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 246

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 18/171 (10%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P  + L       N G +AR      +  + +        +  A  +SA A
Sbjct: 88  PFLFEEGKNPFFVMLDGITDVRNFGAIARTCECAGVDAVIIPAKGSVTVNADAMKTSAGA 147

Query: 65  DCVIDSVRV--FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R        + + D  F I A T              E       +      +
Sbjct: 148 LHTLPVCREQNLKTTLQYLKDSGFRIVAAT--------------EKGDYDYTKADYTGPM 193

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 194 CIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEGVKQR 244


>gi|313676389|ref|YP_004054385.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312943087|gb|ADR22277.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 181

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 13/175 (7%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +   K P++ +L + +   N+G   R    F + ++ L       P  +   ++  A 
Sbjct: 16  EFKKVKKNPIVLVLDNVRSMNNVGSAFRTGDAFLIEKIYLCGITAQPPHREINKTALGAT 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF--SGQNVGI 123
             ++    F N  +A+A L          ++ +K +   +    +  E+    + +    
Sbjct: 76  ETVEW-EHFENTLDAVAKL---------KQDGYKIMSVEQAENSLSLEKFAPKADEKYAF 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           IFG E +G+  E +  S+  +  P      SLNIS ++ +++W  +  S+     
Sbjct: 126 IFGNEVYGVEQEVVDQSDHCLEIPQFGTKHSLNISVSIGVVLWHSVLGSLAPKSP 180


>gi|294669719|ref|ZP_06734785.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308285|gb|EFE49528.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 154

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 21/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            ++L  P++  N G + R   N     L LV P  G+P + ++   A  D     S+ V 
Sbjct: 3   TVVLYQPEIPPNTGNIIRLCANTG-ADLHLVKPL-GFPLDSSKMKRAGLDYHEFASLTVH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N  + ++ L    I+A T   + + +          V             +FG E  GL
Sbjct: 61  ENFADCLSALSGRRIFALT--TKGSTRPDQVSFRPGDV------------FLFGPETRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +    +   I  P+     S+N+S  V ++V+E    
Sbjct: 107 PAEILDSLPAGQKIRLPMKAGSRSMNLSNTVAVVVFEAWRQ 147


>gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
           21]
 gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
           21]
          Length = 241

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 22/174 (12%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P +    K P+I IL       N G +AR      +  L + N      +  A  +SA A
Sbjct: 82  PTIYEEGKVPLILILDGITDVRNFGAIARTAACAGVDALVVPNKGSAEINPDAIKTSAGA 141

Query: 65  DCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              I +V    +L + I       L  +  T       +K                    
Sbjct: 142 LYKI-AVCRHESLTQVIKFLQESGLQVVACTEKTGDTIYKPDF---------------KS 185

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              I+ G E  G+++  I  ++ +   P+     SLN+S +  ++++E +   +
Sbjct: 186 PTAIVMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVSAGVIIYEAIRQRV 239


>gi|199599122|ref|ZP_03212527.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus
           HN001]
 gi|199590015|gb|EDY98116.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus
           HN001]
          Length = 169

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 20/171 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N + L L+ P      +K    +         VR+   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWAKVRIIYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +A        T ++  +   +    +      +   +  +   +FG+E  GL  
Sbjct: 62  DSLDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPE 113

Query: 135 ----EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               E        +  P+     +LN+S    L+V+E +     +  + V 
Sbjct: 114 GFMREHEDQC---LRIPMTANVRALNLSNCAALVVYEALRQQHFAGLETVH 161


>gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822]
 gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822]
          Length = 264

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + R      +  L L +      + K   +SA     +  +RV  NL
Sbjct: 115 VLEQLQDPGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAGEWFRVP-MRVSQNL 173

Query: 78  KEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + I D       + AT  +    +  +   +                 I+ G E  GL+
Sbjct: 174 PQVIEDYKSQNVQVIATLPQGTKTYWEIDFTR--------------PTLILMGNEGAGLS 219

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +E I+L++  ++ P+     SLN++ A  L+++E      V+ + 
Sbjct: 220 DELISLADIGVNIPLGGGVESLNVAIATALLLYEAKRQRAVNQKT 264


>gi|28198735|ref|NP_779049.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1]
 gi|28056826|gb|AAO28698.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1]
 gi|307579878|gb|ADN63847.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 153

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 33/167 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L  P++  N G V R   N    +L L+ P      ++    +       +  R  V 
Sbjct: 6   VLLYQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLDDRQLKRA--GLDYHEYARMQVH 62

Query: 75  SNLKEAIADL--HFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            NL  A+A +    ++A + R   R +  +                       IFG E  
Sbjct: 63  PNLSSALAAIAPRRLFALSTRGQVRYDTPTFRT----------------GDAFIFGPETR 106

Query: 131 GLTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL +  +   + I     +  P+ P   SLN+S AV +MV+E     
Sbjct: 107 GLPDTVL---HTIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 150


>gi|71275853|ref|ZP_00652137.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon]
 gi|71897938|ref|ZP_00680143.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|71899349|ref|ZP_00681509.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|170730164|ref|YP_001775597.1| tRNA/rRNA methylase [Xylella fastidiosa M12]
 gi|182681428|ref|YP_001829588.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23]
 gi|71163431|gb|EAO13149.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon]
 gi|71730863|gb|EAO32934.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|71732182|gb|EAO34237.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|167964957|gb|ACA11967.1| tRNA/rRNA methylase [Xylella fastidiosa M12]
 gi|182631538|gb|ACB92314.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23]
          Length = 155

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 33/167 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L  P++  N G V R   N    +L L+ P      ++    +       +  R  V 
Sbjct: 8   VLLYQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLDDRQLKRA--GLDYHEYARMQVH 64

Query: 75  SNLKEAIADL--HFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            NL  A+A +    ++A + R   R +  +                       IFG E  
Sbjct: 65  PNLSSALAAIAPRRLFALSTRGQVRYDTPTFRT----------------GDAFIFGPETR 108

Query: 131 GLTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL +  +   + I     +  P+ P   SLN+S AV +MV+E     
Sbjct: 109 GLPDTVL---HTIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 152


>gi|205354655|ref|YP_002228456.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274436|emb|CAR39468.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326629793|gb|EGE36136.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 229

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WPS + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPSSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|322377138|ref|ZP_08051630.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
 gi|321281851|gb|EFX58859.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
          Length = 180

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 72

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTN 134
             E++ D                 +    + A  +     + + +N   +FGRE  GL  
Sbjct: 73  FYESLEDF---------MSQMEGKLYLISKFAEKVYSEVDLSTDENHYFLFGREDKGLP- 122

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 123 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B str. Eklund 17B]
 gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B str. Eklund 17B]
          Length = 286

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R    F +  + +   R    +     SS  A   +   RV +
Sbjct: 139 IVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARV-T 197

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL   I +L     ++Y T  R                  + +   G    II G E  G
Sbjct: 198 NLNSVIDELKEKGIWVYGTDIRAEEY--------------SYQTDFGGACAIIIGNEGKG 243

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++   +   + +I  P+     SLN S A  ++++E ++  +
Sbjct: 244 ISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEVLKGRL 285


>gi|71282637|ref|YP_271614.1| tRNA guanosine-2'-O-methyltransferase [Colwellia psychrerythraea
           34H]
 gi|71148377|gb|AAZ28850.1| tRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea
           34H]
          Length = 235

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  V R      ++ +  V     W SE+A      +A +   ID         +AI
Sbjct: 30  SHNLAAVVRTCDAIGISDVHAV-----WKSEEAEVRGGSAAGSQNWIDVHNYHKT-ADAI 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A         A      + ++       V    I   +   II G+E++G + E + L++
Sbjct: 84  A---------ALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEALELAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             I  P+  +  SLN+S A  ++++E       +   +  
Sbjct: 135 QHIVIPMVGMVQSLNVSVACSVVLYEAQRQRAAAGMYDQP 174


>gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 311

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 15/168 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L +     ++ L       N+G + R+   F   +  +V   +    E     + +A  
Sbjct: 156 ELASEPSAVIVALDQVTDPHNVGAILRSAAAFG-ARAVVV--TERHAPETTGVLAKSASG 212

Query: 67  VIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +++V     +NL  A+ DL          +N F SV   +     L +   +G+ V ++
Sbjct: 213 ALEAVPLVRVTNLARALTDLQ---------QNGFWSVGLAESGPSTLAKLDLTGKTV-LV 262

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL    +   +AI   P      SLN+S A  + ++E     
Sbjct: 263 MGAEGSGLRRLTMERCDAIARLPTGGPVGSLNVSNAAAVALYEVARLR 310


>gi|288932987|ref|YP_003437046.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
 gi|290511781|ref|ZP_06551149.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|288887716|gb|ADC56034.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
 gi|289775571|gb|EFD83571.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 229

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS + R+ ++ A        V+    + +A+ 
Sbjct: 30  PHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAAGSNSWVQVKTHRTIADAVG 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + AI   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDKAIDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +          P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPEEQQRLLF 188


>gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
          Length = 261

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG   +L   Q   N+G V R+     +  + L        S K   +   A  ++D   
Sbjct: 111 KGDCAVLDGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLRAGMGAHFLLD--- 167

Query: 73  VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++S  +L+  +A     ++AT  R                 L E          +FG E 
Sbjct: 168 IYSQADLEIWLAHYEDRVFATALREEKQ------AVLYGEDLCE------PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260


>gi|146309755|ref|YP_001174829.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
 gi|145316631|gb|ABP58778.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 229

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ +++A       +V+    + EA+A
Sbjct: 30  PHNVSAIVRTADAVGVHEVHAV-----WPGNRLRTMASSAAGSNSWVTVKTHPTISEAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L       A       + L+  + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  QLK------ASGMQILATHLS--DKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     K    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYERKNSMLPEEEQQRLLF 188


>gi|16762614|ref|NP_458231.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144103|ref|NP_807445.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213022241|ref|ZP_03336688.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052716|ref|ZP_03345594.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427159|ref|ZP_03359909.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582082|ref|ZP_03363908.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213647895|ref|ZP_03377948.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213852189|ref|ZP_03381721.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289803688|ref|ZP_06534317.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289826010|ref|ZP_06545168.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25331702|pir||AG0975 probable RNA-methyltransferase STY4101 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504919|emb|CAD03299.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139740|gb|AAO71305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 157

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A         L  K            G    ++FG E  GL    
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
           dagmatis ATCC 43325]
 gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
           dagmatis ATCC 43325]
          Length = 245

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 14/169 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L+N     +++L       N+G   R      +    +V P+D     S  AR  +  A 
Sbjct: 89  LKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCA-VIV-PKDKSAQLSSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            VI  +RV +NL   + DL         N +N   V    EA   L +   +G  + ++ 
Sbjct: 147 EVIPLIRV-TNLARTLRDLQ--------NEHNIWVVGTAGEATETLYQAKLTGG-LALVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           G E  G+        + +IS P+     SLN+S A  + ++E +   + 
Sbjct: 197 GAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLA 245


>gi|260914705|ref|ZP_05921170.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
 gi|260631209|gb|EEX49395.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
          Length = 158

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +   +  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKR 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               +  +         + R +  F   L  K        +   G    ++FG E  G+ 
Sbjct: 60  HKTFEAFLQ--------SERPKRLF--ALTTKGTPAHSQVQFELGDY--LMFGPESRGIP 107

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +    +   I  P+     S+N+S +V + V+E    
Sbjct: 108 MSILNSLAAEQKIRIPMTENSRSMNLSNSVAVTVYEAWRQ 147


>gi|313471791|sp|A1WBM9|TRML_ACISJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 162

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G V R   N     L LV P      +     +       +   V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRA--GLDYHEYAEVRRH 60

Query: 74  ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               + L++   DL  ++A TT   ++ + +   P +                 +FG E 
Sbjct: 61  PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDW---------------FVFGAES 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQ 183
            GL  E  E       +  P+ P   SLN+S AV + V+E   +NS ++     +  
Sbjct: 106 RGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSFLTPPTQPQPA 162


>gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           2_1_33B]
 gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           2_1_33B]
          Length = 248

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 30/182 (16%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P +    K P I+L      V      N G +AR      +  + +        +  A  
Sbjct: 87  PFVYEQGKDPFIVLLDGVTDVR-----NFGAIARTCECAGVDAIVIPAKGSVSVNADAIK 141

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +SA A  V+   +   ++ + I  L      ++A +              E A      +
Sbjct: 142 TSAGALHVLPVCK-EKSINQVIRFLQQSGVKVFAAS--------------EKAAENYTAV 186

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V I+ G E  G++ E + + + ++  P      SLN+S A  ++V+E +   +  
Sbjct: 187 KYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYEVVRQRMNE 246

Query: 176 SE 177
            +
Sbjct: 247 QQ 248


>gi|167622262|ref|YP_001672556.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167352284|gb|ABZ74897.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           halifaxensis HAW-EB4]
          Length = 153

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R + N    +L L+ P      +K    +      + +V    N
Sbjct: 4   IALYEPEIAPNTGNIIRLIANNGC-KLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKN 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +   EA+     +  TT  +R    S L  K             Q+  ++FG E  GL 
Sbjct: 63  FEAFLEAMDGKRIMACTTKGSR--PHSELTFK-------------QDDVLLFGPESRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + I    +   +  P+     SLN+S AV ++ +E    
Sbjct: 108 ADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQ 147


>gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 229

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|121595834|ref|YP_987730.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
 gi|120607914|gb|ABM43654.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
          Length = 189

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G V R   N     L LV P      +     +       +   V   
Sbjct: 31  IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRA--GLDYHEYAEVRRH 87

Query: 74  ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               + L++   DL  ++A TT   ++ + +   P +                 +FG E 
Sbjct: 88  PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDW---------------FVFGAES 132

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQ 183
            GL  E  E       +  P+ P   SLN+S AV + V+E   +NS ++     +  
Sbjct: 133 RGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSFLTPPTQPQPA 189


>gi|319953759|ref|YP_004165026.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422419|gb|ADV49528.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 151

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L +P++  N G + R       + L LV P     S+K    +         +   ++
Sbjct: 5   IVLFEPEIPNNTGNIGRLSLASG-SHLHLVKPFGFELSDKRVKRA--GLDYWQHISLTIY 61

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++++     +D  F+Y ++                    +  I    N+ +IFG+E  G
Sbjct: 62  DSIEDFYLKNSDKEFVYFSS---------------HGDKTHWDIDFKDNLFLIFGKESKG 106

Query: 132 LTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           L  E  A  SN++   P+ +    SLN++ AV ++V+E +  
Sbjct: 107 LPEEITAQNSNSLYKIPLHSDHVRSLNLANAVSIVVYEGLRQ 148


>gi|293192348|ref|ZP_06609459.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
           F0309]
 gi|292820263|gb|EFF79257.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
           F0309]
          Length = 246

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + S    +++L   +   N+G + R    F    +  V       S K   SSA +   I
Sbjct: 80  EPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHI 139

Query: 69  DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V V  +  +A A +H     +  T+    +   S L  +     ++ R    Q+   +
Sbjct: 140 P-VCVVPSFADARALIHGRSAALLGTSGGAASISLSDLLVQG----VSARSRLSQSHAWV 194

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           FG E  GL+ +E+ L + ++S P+     SLN++ A    ++
Sbjct: 195 FGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLF 236


>gi|288555214|ref|YP_003427149.1| rRNA methylase [Bacillus pseudofirmus OF4]
 gi|288546374|gb|ADC50257.1| rRNA methylase [Bacillus pseudofirmus OF4]
          Length = 157

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 19/164 (11%)

Query: 14  GPVIILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           G  I+L  P++  N G +AR     N   T L L+ P      +K    +        SV
Sbjct: 2   GLHIVLYQPEIPANTGNIARTCAGTN---TSLHLIRPLGFSTDDKMLKRAGC--DYWPSV 56

Query: 72  RV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +  + +L+E + D              F  +           +     ++   +FGRE 
Sbjct: 57  DIHYYDSLEE-LFD--------TYKEGEFYFIETVGTKNFSEFDYSDDNKDHFFVFGRET 107

Query: 130 WGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+  + I    +     P      SLN+S    ++++E +   
Sbjct: 108 TGIPQDIIDRNLDRCFRIPQTDKVRSLNVSNTAAIVIYEAIRQQ 151


>gi|307711340|ref|ZP_07647760.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
 gi|307616856|gb|EFN96036.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
          Length = 167

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             E++ D          ++   K  L  K A  V +E  + + ++   +FGRE  GL  E
Sbjct: 60  FYESLEDFM--------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP-E 110

Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|319934859|ref|ZP_08009304.1| RNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319810236|gb|EFW06598.1| RNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 168

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 15/170 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV P + +N G + R       ++L ++ P      +K    +   D + D  + ++ 
Sbjct: 4   IVLVHPAIPQNTGNIMRTCVAT-HSKLHIIKPMGFSLDDKHMKRA-GLDYIKDLEMEIYE 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N +E +         T    +               ++   S Q+  I+FG E  G+ ++
Sbjct: 62  NWEEFV---------TQNPGDY--HFFTRYSKLCYTDQNYVSDQDQYILFGHEHDGIPHD 110

Query: 136 EI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            +    +  +  P++    SLN+S  V + ++E +          V+ Q 
Sbjct: 111 ILKDHLDECVRIPMDGNARSLNLSNCVAIGIYEVLRQQNYPKLSKVEVQK 160


>gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter
           propionicigenes WB4]
 gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 29/170 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRV 73
           +++L       N G +AR      +    +V P  G  S    A  +SA A   + S+ V
Sbjct: 106 IVVLDGVTDVRNFGAIARTCECAGVD--AIVIPTKGGASITGDAIKTSAGA---LLSIPV 160

Query: 74  F--SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
               NL  A+       +  + A+               E A          + + II G
Sbjct: 161 CREENLGNALKFIVSSGIKLVAAS---------------EKATKNYTEAALTEPIAIIMG 205

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            E  G+  + + L + ++S P+     SLN+S A  ++++E +    +++
Sbjct: 206 AEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAGVLIYEAVRQRQINA 255


>gi|257068792|ref|YP_003155047.1| putative rRNA methylase SpoU family [Brachybacterium faecium DSM
           4810]
 gi|256559610|gb|ACU85457.1| predicted rRNA methylase SpoU family [Brachybacterium faecium DSM
           4810]
          Length = 155

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           + L +P +  N G   R         L L+ P  G+  E A+   A  D   +  VR+ +
Sbjct: 4   VFLHEPVIAGNTGNAIRLSAVTG-AHLHLIEPL-GFDFEDAKLRRAGLDYHDLADVRLHA 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           ++  A+A +    ++A ++     F S+   +E                ++FG E  GL 
Sbjct: 62  DIDTALAAVPQARVFAFSSHTDVTFDSIDYTRED--------------VLLFGTEPTGLP 107

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E ++     + +  P+ P   SLN++ AV + V+E    
Sbjct: 108 EEVMSHPRITSRVRIPMLPARRSLNLANAVSVAVYEAWRQ 147


>gi|268680131|ref|YP_003304562.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618162|gb|ACZ12527.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM
           6946]
          Length = 156

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV PQ+ +N G + R   N + + L +V P     S+K    +      +  V V+ +
Sbjct: 4   IVLVHPQIPQNTGSIGRMCVNADCS-LHIVKPTMFEISDKTVKRAGLDYWHLLDVHVYES 62

Query: 77  LKEAI---ADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L++ +   AD    F +ATT   +                     +G    + FG E  G
Sbjct: 63  LEDFLKMHADKVERFFFATTKTKK-------------PYFEASFQAGD--FLFFGGESTG 107

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E + L     I+ P+     SLN + +  +++++ +  
Sbjct: 108 LPMELMQLKWENAITIPMGKNGRSLNQATSAGIILYDAIRQ 148


>gi|78777295|ref|YP_393610.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
 gi|78497835|gb|ABB44375.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
          Length = 156

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 25/161 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVFS 75
           +LV+PQ+  N G + R   N   + L ++ P      EKA   +           + V+ 
Sbjct: 5   VLVNPQIPNNTGAIGRLCVNAGAS-LHIIKPIAFDIDEKAVRRA--GLDYWHKLDLHVWE 61

Query: 76  NLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +L++   + + I    +ATT  ++  F              E  FS  +  I FG E  G
Sbjct: 62  SLEDFFKNNNIINNAHFATTKTDKPYF--------------EANFSDGDY-IFFGSETAG 106

Query: 132 LTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +       I+ P+     SLN++ +  ++++E +  
Sbjct: 107 IPEEILTKYKEQNITIPMTKEGRSLNLAISTGIVLYEAIRQ 147


>gi|120612549|ref|YP_972227.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120591013|gb|ABM34453.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 158

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 29/174 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G V R   N     L LV P      +K    +       +   V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCI-LHLVEPLGFSMEDKLMKRA--GLDYHEYAEVRQH 60

Query: 74  ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               + L++A  +   ++A TT      ++S+  P +                 +FG E 
Sbjct: 61  AGWTAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDW---------------FVFGAES 105

Query: 130 WGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            GL  E       +  +   P+ P   SLN+S AV + V+E    +  +  +  
Sbjct: 106 RGLPPELRDAFPPAQRL-RLPMLPGQRSLNLSNAVAVTVYEAWRQNGFALPEPA 158


>gi|66048105|ref|YP_237946.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258812|gb|AAY39908.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330970743|gb|EGH70809.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 151

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLKEAIADLH--FIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L   +  +    ++A TT  +R    +   P +                 +FG E  G
Sbjct: 61  ADLASCLEKIGNPRVFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +  LS+   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|255019981|ref|ZP_05292054.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970510|gb|EET27999.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 168

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 24/179 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   A   + S     ++L +P++  N G V R   N  +  L L+ P  G+  + AR  
Sbjct: 1   MPSEAYVAEGSTSWLDVVLFEPEIPPNTGNVIRLCANTGVV-LHLIEPL-GFAWDDARLR 58

Query: 61  SANADCVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            A      +  RV     + + ++A+ +   + A T +            E       R 
Sbjct: 59  RAG-LDYWEFARVRRHEQWQDCRKALGE-RRVLAFTTKA-----------EPGSFARARF 105

Query: 116 FSGQNVGIIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G    ++FG E  GL  + +    +   +  P+ P   S+N+S +V + V+E     
Sbjct: 106 APGD--VLLFGPETRGLPADLLNQFPAEQKLRLPMRPGSRSMNLSNSVAVAVFEAWRQQ 162


>gi|169833898|ref|YP_001693989.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996400|gb|ACA37012.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 167

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             E++ D          ++   K  L  K A  V +E  + + ++   +FGRE  GL  E
Sbjct: 60  FYESLEDFM--------SQMKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP-E 110

Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|168492652|ref|ZP_02716795.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae CDC3059-06]
 gi|225860508|ref|YP_002742017.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|183576971|gb|EDT97499.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae CDC3059-06]
 gi|225726857|gb|ACO22708.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Taiwan19F-14]
          Length = 167

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTN 134
             E++ D                 +    + A  +     + + ++   +FGRE  GL  
Sbjct: 60  FYESLEDF---------MSQMKGKLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 178

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 14/165 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      +I+L + +   N+G V R    F + ++ L       P    + ++  A    
Sbjct: 20  EAEKTPIIIVLDNIRSLNNVGSVFRTSDAFLVEKIYLCGITATPPHRDIQKTALGATD-- 77

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFS--GQNVGIIF 125
                +  +++         A   + + +   V A ++    V+ ++     G+   ++F
Sbjct: 78  --AVTWEYVED-------SIALVRKLKEDGVHVCAIEQAEGAVMLDKFVPTTGEKYAVVF 128

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+  E ++LSN +I  P      SLNIS +  +++W+   
Sbjct: 129 GNEVKGVQQEIVSLSNTVIEIPQVGTKHSLNISVSAGVVIWDLFS 173


>gi|213421680|ref|ZP_03354746.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 156

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A         L  K            G    ++FG E  GL    
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|312958452|ref|ZP_07772972.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
 gi|311286995|gb|EFQ65556.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
          Length = 151

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L   +  L        TT  +R        P   A          +    +FG E  G
Sbjct: 61  ADLASCLESLGHPRLFAFTTKGSR--------PFHDASFA-------EGDAFLFGPESRG 105

Query: 132 LTNEEI-ALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E + AL +   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPAEVLDALPDGHRLRLPMREGCRSLNLSNTVAVAVYEGWRQ 147


>gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
 gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
          Length = 175

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A + + + K P V++L D +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
            A+  +D  +   N  +A+ +L        R        +   E +I+L+E  +   +  
Sbjct: 73  GAEFTVDW-KYVDNAVDAVDNL--------RKAGYMVYSVEQAEGSIMLDELELDKSKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AIVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172


>gi|302873611|ref|YP_003842244.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
 gi|307688207|ref|ZP_07630653.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           cellulovorans 743B]
 gi|302576468|gb|ADL50480.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
          Length = 160

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 31/169 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +   I+L  P++ +N G + R     N   ++L L+ P     ++K    +         
Sbjct: 6   ENINIVLYQPEIPQNTGNIVRTCVLTN---SKLHLIRPLGFEVTDKQLRRA--GLDYWKD 60

Query: 71  VRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +     F  L+E   D  F Y+TT   +                 + +   Q   I+F
Sbjct: 61  ADISYYDSFEELREKFKDRTFYYSTTKATKYY---------------DEVDFKQGDFIVF 105

Query: 126 GRERWGLTNEEIALS--NAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           GRE  GL  +EI  S  + +I  P+      SLN+S  V ++ +E    
Sbjct: 106 GRESSGLP-DEIRNSEPDNLIRIPMVKTSLRSLNLSNTVSIVSYEATRQ 153


>gi|229587902|ref|YP_002870021.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
 gi|229359768|emb|CAY46618.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
          Length = 151

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFDMDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L   +  L        TT  +R        P   A          +    +FG E  G
Sbjct: 61  ADLASCLESLGHPRLFAFTTKGSR--------PFHDASFA-------EGDAFLFGPESRG 105

Query: 132 LTNEEI-ALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E + AL +   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPAEVLDALPDGHRLRLPMREGCRSLNLSNTVAVAVYEGWRQ 147


>gi|327490101|gb|EGF21889.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 184

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D  ++  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLNITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L   +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 79  ESLDNFMEQMD------GRLYLISK-----FAEKVYSEENFEAEGSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 180


>gi|71737140|ref|YP_277002.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557693|gb|AAZ36904.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326466|gb|EFW82518.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331759|gb|EFW87697.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330872585|gb|EGH06734.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330891655|gb|EGH24316.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 151

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L    E I +      TT  +R    +   P +                 +FG E  G
Sbjct: 61  PDLASCLEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +  LS+   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|218281555|ref|ZP_03487984.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989]
 gi|218217344|gb|EEC90882.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989]
          Length = 173

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 26/182 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-VRVFS 75
           ++L +P++ +N G + R       ++L L+ P  G+  ++     +  D + D+ + +  
Sbjct: 4   VVLYEPEIPQNTGNIIRTCMATG-SRLHLIEPL-GFSLDEKHLRRSGMDYIKDADIHIHK 61

Query: 76  NLKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           N    +A+      Y  T   +         KE             +V ++ G+E  G+ 
Sbjct: 62  NWDAFVAENPCEHYYFMTRYGKKAPSEFDFAKEEG-----------DVYLVLGKESTGVD 110

Query: 134 NEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            + +    +  +  P+     SLN+S    ++V+E +                 +T  EL
Sbjct: 111 KKILKGHLDTCMRLPMVANARSLNLSNCAAIIVYEVLRQLDYPG---------LSTHEEL 161

Query: 193 LS 194
             
Sbjct: 162 KG 163


>gi|241890130|ref|ZP_04777428.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
           ATCC 10379]
 gi|241863752|gb|EER68136.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
           ATCC 10379]
          Length = 157

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++  N G +AR     N   T+L L+ P      +K    +       + +   
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTN---TRLHLIRPLGFSIDDKHVKRA--GLDYWEHLDLV 58

Query: 73  VFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V+ +  E   A  D H+   T    +   K+                  +++  IFGRE 
Sbjct: 59  VWDSFDEFLEATNDKHYYLIT----KFGTKNYCDFDF-------SNTDNEDIYFIFGRET 107

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL  E  E   S   +  P++    SLN+S    L+++E +   
Sbjct: 108 KGLPKEFRE-KYSEQALRIPMSENVRSLNLSNTAALIIYEALRQQ 151


>gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
           17393]
 gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
           17393]
          Length = 246

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 28/176 (15%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P L    K P+ ++      V      N G +AR      +  + +        +  A  
Sbjct: 88  PFLFEEGKNPLFVMLDGVTDVR-----NFGAIARTCECAAVDAVIIPAKGSVTVNADAMK 142

Query: 60  SSANADCVIDSVRV--FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +SA A  V+   R        + + D  F I A T              E       +  
Sbjct: 143 TSAGALHVLPVCREQNLKTTLQYLKDSGFRIVAAT--------------EKGDYDYTKAD 188

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + II G E  G++ E +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 189 YTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|15828774|ref|NP_326134.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089717|emb|CAC13476.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 174

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 69/162 (42%), Gaps = 18/162 (11%)

Query: 17  IILVDPQLGENIGMVARAM-WNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73
           I+L  P++  N G + R        ++L ++ P     + +    SA A  ++      V
Sbjct: 4   IVLYQPEIPPNTGNIIRTCFATS--SKLHIIKPIAFDLNPRFLKRSA-AGHLLSEIQHEV 60

Query: 74  FSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +  + +A     +  Y T    R + KS           + +    +++  +FG E  
Sbjct: 61  HDSYNDFLAKYQNENIFYIT----RYSQKSYSDIDFKLETFDGK----KDIFFVFGTEST 112

Query: 131 GLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G+  + ++   +  +  P+ P   SLN++ +V+++++EC+  
Sbjct: 113 GIPKKILSQNIDKTLRIPMAPENRSLNLANSVVVIIYECLRQ 154


>gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
           glomerans PW2]
 gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
           glomerans PW2]
          Length = 284

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       N G + R+        + + + R       A  +SA A   +   RV +
Sbjct: 130 VVVLDHVTDEGNFGAIVRSAEVVGAAGVIIASKRAAAVGVGAYKTSAGAVMHLPIARVPN 189

Query: 76  NLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            ++  EA+    F +   T              E A            + ++ G E  GL
Sbjct: 190 IVRALEALKGAGFWVGGAT--------------EHARDTVWDASLEGRIALVAGSEGSGL 235

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           +   +   +  +  P      SLN++QA  ++ +E +     S E  
Sbjct: 236 SRLVLESCDFTVRLPQRGQTESLNVAQAATVLCYEWLRRETASGEGT 282


>gi|225155853|ref|ZP_03724339.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224803403|gb|EEG21640.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 254

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 25/180 (13%)

Query: 2   TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEK 56
            P   +++  AK   P+++L       N+G +AR    F +  + +  P       P E 
Sbjct: 83  APLPREMRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHIII--PAHASAALPGES 140

Query: 57  ARSSSANA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110
           A   +           V    R  + L+EA      + A T R        L        
Sbjct: 141 AHRIAEGGLEHLTLWRVPTLARFCAELREA--GYEVVGAAT-RGGALTLPALT------- 190

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  G    ++ G E  GL  E       +++ P +    SLN+S A  ++++  ++
Sbjct: 191 --GGGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALLK 248


>gi|296100529|ref|YP_003610675.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054988|gb|ADF59726.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 157

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D    +  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LD----YHE 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +    +            + + A        +  +       ++FG E  GL    
Sbjct: 54  FTAVVRHHDYAAFL---ESEKPERMFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPATI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|257483750|ref|ZP_05637791.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331012099|gb|EGH92155.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 151

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L    E I +      TT  +R    +   P +                 +FG E  G
Sbjct: 61  PDLASCMEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +  LS+   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
 gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
          Length = 265

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      + QL L +      + K   +SA     +  +RV  NL   I 
Sbjct: 120 QDPGNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVP-MRVSDNLGALIE 178

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   +  T  +    +  +   +                 I+ G E  GLT E ++
Sbjct: 179 GYKRQQVQVIGTLPQGNKTYWEIDFTR--------------PTLILLGNEGAGLTPELVS 224

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           L +  ++ P+     SLN++ A  L+++E      ++
Sbjct: 225 LVDQQVTIPLGGGVESLNVAIAAALLLYEAKRQKQLT 261


>gi|254518073|ref|ZP_05130129.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226911822|gb|EEH97023.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 153

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 27/162 (16%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDS 70
           I+L  P++ +N G +AR     N   + L L+ P      +K    +   D      ++ 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTN---STLHLIKPMGFKIDDKQVKRA-GLDYWSELKLEM 60

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              +    +   D     ATT                  V  + +   +   I+FGRE  
Sbjct: 61  HESYEEFMKKYGDKRIFLATT---------------HGGVHYDEVSFKEGDFIMFGRESS 105

Query: 131 GLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           G+  EE+  S+  I  P+      SLN+S  V ++ +E +  
Sbjct: 106 GVP-EEVHNSHEGIRVPMIKTSTRSLNLSNTVAIVAYEALRQ 146


>gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 229

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 261

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  ++L   Q   N+G V R+     +  + L        S K   +   A  +     
Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFL---SG 167

Query: 73  VFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++   +L+  +A     ++AT  R           +E   VL      G     +FG E 
Sbjct: 168 IYPQADLEIWLARYKGRVFATALR-----------EEKQAVLYGEDLCG-PTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKYVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 262

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 16/168 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVID 69
              G  ++L   Q   N+G V R+     +  L + +   D W S K   ++  A  ++ 
Sbjct: 109 PVNGDCVVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADVW-SPKVLRAAMGAHFLLK 167

Query: 70  SVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  L + I+     ++AT   ++NN                 +   Q+   IFG E
Sbjct: 168 IHTEVR-LAQWISSYRDKVWATALHHQNNHNLYN------------LDLHQSAAWIFGNE 214

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             G+ +  +   +  +  P+     SLN++ A  + ++E M       
Sbjct: 215 GSGVDDNILDQVSGCVRIPMAGKTESLNVAMAATVCLFEQMRQRQAEQ 262


>gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii
           DSM 22836]
          Length = 246

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P I +L       N G +AR      +  + +        +  A  +SA A
Sbjct: 87  PFLYEQGKDPFILVLDGITDVRNFGAIARTCEVAGVDAIVIPAKGSVTVNADAIKTSAGA 146

Query: 65  DCVIDSVRVFS--NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
              +  + V    +L  AI  L      + A T R  +++ +V                 
Sbjct: 147 ---LLKIPVCKEQSLTNAIQFLKNSGIKVVAATERGADDYTAVDY--------------S 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +  + G E  G++N+ + +++ ++  P      SLN+S A  ++++E +  
Sbjct: 190 GPIAFVMGAEDTGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIYEVIRQ 242


>gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp.
           Re1]
          Length = 250

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 18/168 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL +    +N+G + R         + +   R    +      S+ A   +   RV +
Sbjct: 98  ILILNELTDPQNLGSIIRTADGMGAHGIIIPKNRACGITPTVAKISSGAVEYVKVARVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  +I    A  +N F+  L                 ++ ++ G E  GL
Sbjct: 158 IARTIDELKKEGLWIIGADAEGKNYFEVDLT---------------GSIALVIGGEDKGL 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
                   + ++  P+     SLN + A  ++ ++ +   I S  + +
Sbjct: 203 GKLVKQKCDILVRIPLRGRITSLNAAVAASILGYDILRQRITSHGQTI 250


>gi|206901633|ref|YP_002251674.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206740736|gb|ACI19794.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 153

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L++PQ+  N G + R     N ++L LV       ++K    +      +    V+ N
Sbjct: 7   VVLIEPQIPYNTGNIGRLCVATN-SKLHLVGKLGFSLNDKYLKRAGLDYWSLLDYEVYKN 65

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++ +             +N     +  +  A  L   +   +   +IFG E +G+  E 
Sbjct: 66  FEDFLE------------KNEGGRFIFVEFPAFKLYTEVSYQEGDYLIFGAEDYGIPREI 113

Query: 137 IALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I         +S P+     SLN+S +V ++V+E +  
Sbjct: 114 IER--YWENSVSIPMFGPVRSLNLSSSVAIVVYEALRQ 149


>gi|226324158|ref|ZP_03799676.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
 gi|225207707|gb|EEG90061.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
          Length = 165

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 28/163 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R     N T+L L+ P     +EK    +       + + V   
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATN-TRLHLIEPLGFRLNEKNLKRA--GMDYWEHLDVTTY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E         ATT                +  L   +    +  I+FG+E  G
Sbjct: 61  IDYRDFMEKNPGAKIYMATT---------------KSPNLYTDVKYEPDCYIMFGKESAG 105

Query: 132 LTNEEIALSNA---IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  EEI L +     I  P+     SLN+  +V ++++E +  
Sbjct: 106 IP-EEI-LCHHKKDSIRIPMIGDIRSLNLGNSVAIVLYEALRQ 146


>gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
           DSM 2588]
 gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
           DSM 2588]
          Length = 263

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
           NIG +AR+        + +  P  G    +E+A  SSA A   I SV   ++L +AI  L
Sbjct: 127 NIGAIARSAVCCGAQAIII--PDRGIAALNEEAIKSSAGALETI-SVCRVNSLLKAIDTL 183

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
           H           N   V+A +  A          + V +I G E  G+    I  S+ + 
Sbjct: 184 HL----------NGIKVIASEMEAETKLYDCQLQEPVAVIMGSEDKGVFPALIKASDTLF 233

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             P+   F S N+S A  ++++E M+    
Sbjct: 234 HIPMAGNFESFNVSVAAGIILYEAMKQRGA 263


>gi|154707421|ref|YP_001423885.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111]
 gi|154356707|gb|ABS78169.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111]
          Length = 152

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N   + L L++P      EK    +       +   +   
Sbjct: 4   IALFEPEIPPNTGNIIRLCANAGAS-LYLIHPLGFSLDEKRLQRA--GLDYREWATIIHY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F   K A A+ H I+A T + +  +  V                  +   +FG E  G
Sbjct: 61  DHFEAFKSAFAE-HRIFACTTKGKTIYADVHYR--------------SSDVFLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E       +  I  P+     S+N++  V ++++E    
Sbjct: 106 LPAEIRTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147


>gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 246

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 18/171 (10%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P  + L       N G +AR      +  + +        +  A  +SA A
Sbjct: 88  PFLFEEGKSPFFVMLDGITDVRNFGAIARTCECAGVDAVIIPAKGSVTVNADAMKTSAGA 147

Query: 65  DCVIDSVRV--FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R        + + D  F I A T              E       +      +
Sbjct: 148 LHTLPVCREQNLKTTLQYLKDSGFRIVAAT--------------EKGDYDYTKADYTGPM 193

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 194 CIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYEGVKQR 244


>gi|161505771|ref|YP_001572883.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867118|gb|ABX23741.1| hypothetical protein SARI_03947 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 157

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A         L  K           +G    ++FG E  GL    
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQNGDY--LMFGPETRGLPASI 110

Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   +    I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALSKEQKIRIPMMPNSRSMNLSNAVSVVVYEAWRQ 147


>gi|329902629|ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548687|gb|EGF33332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 156

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 17/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++  N G + R   N    QL L+ P  G+P + A+   A      D    +V 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTG-AQLHLIEPL-GFPLDDAKMRRAG-LDYHDYATMQVH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                   D     AT  +        L    +      +   G     +FG E  GL  
Sbjct: 61  P-------DWSRFIAT-VQPDPQRMFALTTHGSTPFATGQFRPGD--VFVFGSETKGLDP 110

Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              E    +  I  P+ P   SLN+S  V ++V+E    
Sbjct: 111 ALRESFPPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 149


>gi|237728947|ref|ZP_04559428.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
 gi|226909569|gb|EEH95487.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
          Length = 229

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 18/174 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ +++A        V+    + +A+ 
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASSAAGSNSWVQVKTHLTIGDAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  ++R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 84  -------THLKSRGMQVLATHLSDKAVDFRE-IDYMRPTCILMGQEKTGITQEALDLADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
            I  P+  +  SLN+S A  L+++E       +     +    P  + E    L
Sbjct: 136 DIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYRRENSMLP--QEEQQRLL 187


>gi|152972505|ref|YP_001337651.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897101|ref|YP_002921847.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262045611|ref|ZP_06018630.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996955|ref|ZP_08302652.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
 gi|150957354|gb|ABR79384.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549429|dbj|BAH65780.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259037037|gb|EEW38289.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539245|gb|EGF65274.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
          Length = 229

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS + R+ ++ A        V+    + +A+ 
Sbjct: 30  PHNVSAVIRTADAVGVHEVHAV-----WPSSRMRTMASAAAGSNSWVQVKTHRTIADAVG 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + AI   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDKAIDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +          P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSMLPPQEQQRLLF 188


>gi|120556073|ref|YP_960424.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325922|gb|ABM20237.1| RNA methyltransferase, TrmH family, group 2 [Marinobacter aquaeolei
           VT8]
          Length = 154

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++L +P++  N G + R   N    QL L+ P      +K    +       +    ++ 
Sbjct: 4   VVLYEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFSLEDKQMRRA--GLDYSEYATVKIH 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +    +A          TT  +R+                E  F   +  ++FG E  G
Sbjct: 61  PDYDSFLATEQPSRLFGLTTKGSRHYH--------------EVAFRDGDY-LMFGPETRG 105

Query: 132 LTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E++     +   +  P+ P   SLN+S    L+V+E    
Sbjct: 106 LP-EDVRNGLPAEHRLRVPMRPESRSLNLSNTAALVVYEAWRQ 147


>gi|204928623|ref|ZP_03219822.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322056|gb|EDZ07254.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 229

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|315604404|ref|ZP_07879470.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314110|gb|EFU62161.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 293

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 9/154 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++   +   N+G + R    F    +  V       S K   SSA +   +  V +  +
Sbjct: 125 VVIAQGRDPGNVGTIIRTADAFGARAVIAVAGTVDAASPKVVRSSAGSVFHLP-VCLVPS 183

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             EA   +H     +  T+  + +   + L  +     ++ R    Q+    FG E  GL
Sbjct: 184 FAEARDLIHGRGAALLGTSGGSGSLDLADLLVEG----ISSRSRLSQSHAWAFGNEARGL 239

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + EE+   + +++ P+     SLN++ A    ++
Sbjct: 240 SAEEMRACDGLVAIPMTGRAESLNVASAAATCLF 273


>gi|126452601|ref|YP_001064786.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|134279430|ref|ZP_01766142.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 305]
 gi|242315209|ref|ZP_04814225.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106b]
 gi|126226243|gb|ABN89783.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106a]
 gi|134248630|gb|EBA48712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 305]
 gi|242138448|gb|EES24850.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106b]
          Length = 179

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           ++LV+P++  N G V R   N    +L L+ P  G+P + A+   A  D      +RV  
Sbjct: 27  VVLVEPEIPPNTGNVIRLCANTG-ARLHLIEPL-GFPLDDAKMRRAGLDYHEYAQMRVHR 84

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +A    D   ++A T R    F              +R F   +   +FG E  G
Sbjct: 85  DWDAFVAAEAPDPARMFAFTTRGSGRFH-------------DRAFEPGDW-FVFGAETRG 130

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L    +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 131 LAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQA 173


>gi|183220443|ref|YP_001838439.1| putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910556|ref|YP_001962111.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775232|gb|ABZ93533.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778865|gb|ABZ97163.1| Putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 277

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 71/173 (41%), Gaps = 15/173 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS 59
           M P+   LQ S   P++I+   +   N+G + R      +  L +V +PR    +     
Sbjct: 117 MVPWN-SLQTSETNPILIIEGVEKPGNLGTILRTAEGAGVG-LVIVTDPRIDLFNPNVVR 174

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +S           +F  L   I DL  +  T  + +   +  + P+     L   +   +
Sbjct: 175 ASTG--------TIF-TLPVYIGDLTEVL-TEFKKQGYKRYAVTPE--GKTLYTSVNLKE 222

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               +FG E++GL+     L++  +  P+     SLN++ +  ++++E +   
Sbjct: 223 KSVFLFGSEQYGLSPLAKELADTTLYLPMFGEADSLNLAMSCGIVLYESIRQR 275


>gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 248

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           +Q S    ++ L       N+G   R      + Q  +V PRD     +  AR  +A   
Sbjct: 91  MQQSPNALLLALDQVTDPHNLGACIRTAAAMGV-QAVIV-PRDRAASLTPTARKVAAGGA 148

Query: 66  CVIDSVRVFSNLKEAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  ++V +NL   +A L       +  T          +L   E A+ + +  FSG  
Sbjct: 149 EKVKFIQV-TNLARTLAHLKDTTHTRVIGT----------MLD--EKALPIQQCDFSG-P 194

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V I+ G E  GL     +  +  +  P++    SLN+S A  + ++E     
Sbjct: 195 VVIVMGAEDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATGMALYEACRQR 246


>gi|325687110|gb|EGD29133.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 167

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLDITYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +                +++     +   E   +  +   +FGRE  GL  
Sbjct: 62  ESLDDFMEQM-----------EGRLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    V E   
Sbjct: 110 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLVHEYEA 163


>gi|51594425|ref|YP_068616.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|186893412|ref|YP_001870524.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|51587707|emb|CAH19307.1| putative methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|186696438|gb|ACC87067.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis PB1/+]
          Length = 162

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 36/170 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66
           I+L +P++  N G + R   N    QL L+ P      +K    +           +   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHD 62

Query: 67  V---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               +DS ++ S        L  ++A T +          P  +A      +    N  +
Sbjct: 63  YQAFLDSEKLDST------QLARLFALTTKG--------TPAHSA------VSYQANDYL 102

Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG E  GL    +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 103 LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 152


>gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
 gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 246

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 21/170 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANAD 65
           ++ SA   ++IL       N+G   R      +    +V P+D     +   R  +  A 
Sbjct: 91  IKKSATPFLLILDGVTDPHNLGACLRTADAAGID--AIVVPKDNSVALTPVVRKVACGAA 148

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +I  ++V +    L+E      ++  T                 A            + 
Sbjct: 149 DLIPLIQVTNLARTLREIKDAGVWVVGTAG--------------EATQSIYDCKMQGPIA 194

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 195 LVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLYEIVRQR 244


>gi|307710428|ref|ZP_07646867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307618840|gb|EFN97977.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 167

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             E++ D          ++   K  L  K A  V +E  + + ++   +FGRE  GL  E
Sbjct: 60  FYESLEDFM--------SQMKGKLYLISKFAENVYSEVDLSTDEDHYFLFGREDKGLP-E 110

Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|150009602|ref|YP_001304345.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256838324|ref|ZP_05543834.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|262383110|ref|ZP_06076247.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
 gi|149938026|gb|ABR44723.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256739243|gb|EEU52567.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|262295988|gb|EEY83919.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
          Length = 176

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 13/173 (7%)

Query: 1   MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +TP A   + S K P +++L   +   N+G V R    F +  + L       P+ +   
Sbjct: 12  LTPEA--FKESKKIPLIVVLDHIRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHK 69

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSG 118
           ++  A+  +D    F +  EA+  L        R        +   E +++L+  ++   
Sbjct: 70  TALGAEETVDW-EYFKDTPEAVDKL--------RQEGYTVCAVEQAEGSVMLDNLQLDKT 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   I+ G E  G+    +   +  I  P      SLN+S    +++W+  + 
Sbjct: 121 KKYAIVMGNEVKGVQQNVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQ 173


>gi|119899105|ref|YP_934318.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
 gi|119671518|emb|CAL95431.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
          Length = 177

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +P++  N G + R   N     L LV P     ++KA + +      +  V V ++
Sbjct: 17  IILFEPEIPPNTGNIIRLAANTGCH-LHLVEPLGFVLTDKALARAGLDYHDLARVTVHTD 75

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                A L    ++A T R +    +V                      +FG E  GL  
Sbjct: 76  WPACRAFLGERRVFALTTRAQRRHDTVDFR--------------PGDAFLFGPESRGLPP 121

Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           E  E       +  P+ P   S+N+S AV +MV+E           +  +   
Sbjct: 122 ELRESLPPEQRLRLPMVPSNRSMNLSNAVAVMVFEAWRQQDFVGAGDGPQSLP 174


>gi|302844295|ref|XP_002953688.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f.
           nagariensis]
 gi|300261097|gb|EFJ45312.1| hypothetical protein VOLCADRAFT_106038 [Volvox carteri f.
           nagariensis]
          Length = 429

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANA 64
           +      G  ++++ P+    +G VARA  +F    LR+V PR         A+S+S  A
Sbjct: 51  EPPALLDGVTVVIISPRKPVTVGTVARACGSFECEDLRIVMPRQESYITRRHAKSASKGA 110

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV 101
             ++     + ++ +A AD     A T  ++ +   V
Sbjct: 111 QYILYRAAHYDSIAQATADCEVRIAFTRWSQASSPHV 147



 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM---VWECMENSIVSS 176
            V ++FGRE  G+++EE+                SL++S AV +    +++   N +  +
Sbjct: 354 RVALVFGREELGMSDEEVDSCEE-----------SLSLSHAVSIALCTLYQARLNHLTGA 402

Query: 177 EKNVKEQNTPATKGELLSFLDYLE 200
                     A     L    +L 
Sbjct: 403 AGEQAIAAAAAAGEAQLLLQPHLH 426


>gi|213609646|ref|ZP_03369472.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 184

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 16/169 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIDDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            I  P+  +  SLN+S A  L+++E       +     +    P  + +
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQ 184


>gi|62182237|ref|YP_218654.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167549007|ref|ZP_02342766.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233268|ref|ZP_02658326.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235358|ref|ZP_02660416.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241923|ref|ZP_02666855.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260501|ref|ZP_02682474.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168818425|ref|ZP_02830425.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444680|ref|YP_002042992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448230|ref|YP_002047774.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469893|ref|ZP_03075877.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735347|ref|YP_002116686.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|200387615|ref|ZP_03214227.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207858980|ref|YP_002245631.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585541|ref|YP_002639340.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910216|ref|ZP_04654053.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62129870|gb|AAX67573.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194403343|gb|ACF63565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406534|gb|ACF66753.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456257|gb|EDX45096.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710849|gb|ACF90070.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291598|gb|EDY30950.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604713|gb|EDZ03258.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205325898|gb|EDZ13737.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332504|gb|EDZ19268.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339031|gb|EDZ25795.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344462|gb|EDZ31226.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350250|gb|EDZ36881.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710783|emb|CAR35144.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470069|gb|ACN47899.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320088164|emb|CBY97926.1| putative RNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322716725|gb|EFZ08296.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 229

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
 gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
          Length = 229

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++   ++E +      +     +
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYLRENSMLPEAEQQHLLFE 189


>gi|320103920|ref|YP_004179511.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
 gi|319751202|gb|ADV62962.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
          Length = 178

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 34/189 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-----ANADCVIDSV 71
           I+LV P++  N G + R       T L LV P     +++    +     A+ D      
Sbjct: 8   IVLVHPEIAPNTGAIGRTCVGVGAT-LWLVRPMGFQINDRHLKRAGLDYWAHLDW----- 61

Query: 72  RVFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           R+  NL+E +       ++  +AR    +                +       +IFG E 
Sbjct: 62  RIVENLEEIVERFGWDRLWFFSARGGRPY--------------ASLNYQPGDALIFGSES 107

Query: 130 WGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN----SIVSSEKNVKE 182
            GL          +   +S P+ P    LN+S AV +  +E +       +V  E    +
Sbjct: 108 RGLPLEWRARAEAAERAVSIPMRPEARGLNLSNAVAVAAFEAIRQFQARGLVDFESLQVQ 167

Query: 183 QNTPATKGE 191
            +  A   E
Sbjct: 168 DDPIAPFEE 176


>gi|330447116|ref|ZP_08310766.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491307|dbj|GAA05263.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 154

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+        TT             K      N +   G    ++FG E  GL 
Sbjct: 63  FAAFMEAMQGRRIFACTT-------------KTTNFHTNAKFEQGD--VLLFGPETRGLP 107

Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E IA       +  P+ P   SLN+S AV ++ +E    
Sbjct: 108 AEFIASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147


>gi|294638286|ref|ZP_06716539.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
           ATCC 23685]
 gi|291088539|gb|EFE21100.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
           ATCC 23685]
          Length = 157

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N     L L+ P      +K    +         +R   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFTWDDKRLRRAGLDYHEFADIRRHHD 62

Query: 77  LKEAIA-DL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +A +    ++A T +          P  +A+       +G    ++FG E  GL  
Sbjct: 63  YATFLASECPQRLFALTTKG--------TPAHSAV----SYQAGDY--LLFGPETRGLPA 108

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 109 TILDNLPAQQKIRIPMLASSRSMNLSNAVSVVVYEAWRQ 147


>gi|269794006|ref|YP_003313461.1| rRNA methylase SpoU family [Sanguibacter keddieii DSM 10542]
 gi|269096191|gb|ACZ20627.1| predicted rRNA methylase SpoU family [Sanguibacter keddieii DSM
           10542]
          Length = 157

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 23/170 (13%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+  +P++ +N G   R         L LV P     SE     +      +  + V 
Sbjct: 5   PSIVFHEPRIPQNTGNAIRLAAVTGAA-LHLVEPLGFDLSEPKLKRAGLDYHDLAHLTVQ 63

Query: 75  SNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +L+  +A       F + T A  R +                         ++FG E  
Sbjct: 64  PDLETLLASAPDARVFAFTTKATTRYSDVEYRPSDL----------------LVFGPEPT 107

Query: 131 GLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL++E +A       +  P+ P   SLN++ +  ++++E          +
Sbjct: 108 GLSDEVLAHPRITDQVKIPMLPSRRSLNLTSSASIVIYEAWRQLGFPGGE 157


>gi|56415633|ref|YP_152708.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364560|ref|YP_002144197.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129890|gb|AAV79396.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096037|emb|CAR61624.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 229

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGREMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQRLLF 188


>gi|15603378|ref|NP_246452.1| hypothetical protein PM1513 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721900|gb|AAK03597.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 158

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +   +  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKR 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               +          AT        K + A        + ++       ++FG E  G+ 
Sbjct: 60  HKTFE-------TFLAT-----EQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGIP 107

Query: 134 N---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               + + ++  I   P+     S+N+S +V + V+E           N+ 
Sbjct: 108 MSILDSLPMAQKI-RIPMTENSRSMNLSNSVAVAVYEAWRQLGYGGAVNLP 157


>gi|332362259|gb|EGJ40059.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 184

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D  ++  +
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLNITYY 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L + +  +        R     K         +   E   +  +   +FGRE  GL  
Sbjct: 79  ERLDDFMEQMD------GRLYLISK-----FAEKVYSEENFEAEGSHYFMFGREDKGLP- 126

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +     +    + E   
Sbjct: 127 EEFMRRHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFAGLDLIHEYEA 180


>gi|332667598|ref|YP_004450386.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336412|gb|AEE53513.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 178

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 16/164 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
                 ++IL + +   N+G   R    F LT++ L       P ++   ++  A   +D
Sbjct: 22  QEKTPLILILDNVRSALNVGSAFRTADGFALTKIYLCGITAQPPHKEILKTAIGATESVD 81

Query: 70  SVRVFSNLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIF 125
                    E + D    + A  A        VLA ++A    +   +       + ++F
Sbjct: 82  W--------EYVEDPCAAVQALQA----AGWQVLAVEQAENSTSLEQYTPPPNAKLAVVF 129

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           G E  G+++E + + +  +  P      SLNI+  V ++VWE  
Sbjct: 130 GNEVSGVSDEVMDIVDGALEIPQYGTKHSLNIAVCVGIVVWELF 173


>gi|332077772|gb|EGI88233.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 167

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTN 134
             E++ D                 +    + A  +     + + ++   +FGRE  GL  
Sbjct: 60  FYESLEDF---------MSQIKGKLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 110 EDFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|283850256|ref|ZP_06367545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
 gi|283574282|gb|EFC22253.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
          Length = 196

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 23/181 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82
             N+  + R+   F + ++ L+     +P    + SS +A   ++++R     +L  ++ 
Sbjct: 34  PHNVSAILRSCDAFGIHRVHLLYTDTAFP-ALGKKSSGSAKKWVETIRHPDAASLAASLK 92

Query: 83  D--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 +    +             E A  L +   +G  V II G E  G+  +     
Sbjct: 93  GQGYTLVATLCS-------------ETARPLQDWDLTG-KVAIILGNEHRGVDEDLAPHV 138

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE 200
           +  +  P+  +  SLN+S A  ++++E       +   +           EL       E
Sbjct: 139 DGALYIPMQGMVQSLNVSVAAAVILYEGFRQRHAAGRYDTPSLPP----AELARLAGEWE 194

Query: 201 I 201
            
Sbjct: 195 Q 195


>gi|255013118|ref|ZP_05285244.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|298373994|ref|ZP_06983952.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
 gi|301311793|ref|ZP_07217718.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
 gi|298268362|gb|EFI10017.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
 gi|300830353|gb|EFK60998.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
          Length = 176

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 70/173 (40%), Gaps = 13/173 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +TP A   + S K P+I+++D     N +G V R    F +  + L       P+ +   
Sbjct: 12  LTPEA--FKESKKIPLIVVLDHVRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHK 69

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSG 118
           ++  A+  +D    F +  EA+  L        R        +   E +++L+  ++   
Sbjct: 70  TALGAEETVDW-EYFKDTPEAVDKL--------RQEGYTVCAVEQAEGSVMLDNLQLDKT 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   I+ G E  G+    +   +  I  P      SLN+S    +++W+  + 
Sbjct: 121 KKYAIVMGNEVKGVQQNVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQ 173


>gi|325570819|ref|ZP_08146502.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156329|gb|EGC68511.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 236

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 27/169 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L +PQ+  N G +AR     N T L L+ P      +K    +         V +   
Sbjct: 73  IVLFEPQIPANTGNIARTCAATN-THLHLIEPLGFSTDDKQLKRA--GLDYWHDVNITYH 129

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRER 129
              +   + + +               + +    + A  +   +   +  +   IFG+E 
Sbjct: 130 KDLATFMDFLGE---------------RPLYLISKFANRVYSDVDYTADDDQFFIFGKET 174

Query: 130 WGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
            GL    +   +   +  P+N     SLN+S    L+++E +       
Sbjct: 175 TGLPESFMREHAEKCLRIPMNDEHVRSLNLSNTAALIIYEVLRQQGFPQ 223


>gi|222112034|ref|YP_002554298.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
 gi|221731478|gb|ACM34298.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
          Length = 162

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 28/177 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G V R   N     L LV P      +     +       +   V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDPLMRRA--GLDYHEYAEVRRH 60

Query: 74  ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               + L++   DL  ++A TT   ++ + +   P +                 +FG E 
Sbjct: 61  PGWTALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDW---------------FVFGAES 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQ 183
            GL  E  E       +  P+ P   SLN+S AV + V+E   +NS ++     +  
Sbjct: 106 RGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSFLTPSTQTQPA 162


>gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354]
 gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 229

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITEEALALADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
           129PT]
 gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
           2336]
 gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT]
 gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus
           2336]
          Length = 245

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 24/173 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           LQ  A   +++L       N+G   R+     +    +V P+D     +  AR  +  A 
Sbjct: 89  LQKKANPLLLVLDGITDPHNLGACLRSADAAGVCA-VIV-PKDKSAQLTAIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            V+  VRV +NL   + DL      ++  T                 AI           
Sbjct: 147 EVVPLVRV-TNLARTLRDLQQQHNIWVVGTAG--------------EAIETLYEAKLTGG 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 192 LALVMGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLFEIVRQRL 244


>gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357]
          Length = 229

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 228

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 24/205 (11%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQLG-ENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       Q+    +  + +L++      N   V R+     + +  L+    G P+E
Sbjct: 1   MTPERWQKIQQVLARRQPDLTVLMERVHKWHNFSAVLRSCDAVGVLEAHLIPAAHGIPTE 60

Query: 56  K-------ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA 108
                   A +S + A  V   +R + +   A ADL        R+R            A
Sbjct: 61  DQNPSRHTAATSGSAAKWV--GLRTYPDTPSAFADL--------RSRGFVIYAAHFSHKA 110

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           I   E +   +   I+ G E+WG+T E   L++  I  P+  +  SLN+S A  ++++E 
Sbjct: 111 IDYRE-VDYTRPTCILLGTEKWGVTEEAATLADGHIVIPMMGMVQSLNVSVAAAVILFEA 169

Query: 169 MENSIVSSEKNVKEQNTPATKGELL 193
               I +   + + +  PA    LL
Sbjct: 170 QRQRIQAGMYD-RPRLEPALHQRLL 193


>gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
           NCIB 8327]
 gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
           NCIB 8327]
          Length = 257

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
               ++   ++IL   +   N+G + R         + ++  +    S     +SA A  
Sbjct: 101 AAPRNSSPLLVILQGLEDPHNVGAIIRTAEAVAADSVIMIEGKGAPISATVHKASAGA-- 158

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  +RV   +K  +  L  +            S++A    A   +  I   +   ++ G
Sbjct: 159 -LSHMRVCK-VKSLVKTLDLL-------HERGFSIVAADMEAEHNHTDIDWKRPTVLVMG 209

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            E  GL +E     + I+  P+     SLN+S A  +M++E M   +
Sbjct: 210 AEGKGLGSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLYEAMRQRL 256


>gi|317969845|ref|ZP_07971235.1| rRNA methylase [Synechococcus sp. CB0205]
          Length = 157

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 17/163 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P ++L  P++  N G VAR+    + T+L L+ P      ++    +         +   
Sbjct: 2   PRVVLFQPEIPPNTGNVARSCAA-SCTELHLIEPLGFQIDDRTLKRAGLDYWPWVQLERH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +N ++ +           + R     +LA    A     RI    +  ++FGRE  GL  
Sbjct: 61  ANWEQFLE----------KRRQRGGRLLALSRHASEPYHRIQYRADDWLLFGRESSGLPG 110

Query: 135 EEIALSNAIISFPV------NPLFPSLNISQAVLLMVWECMEN 171
           E +   +  +  P+           SLN++ +V ++++E +  
Sbjct: 111 ELLEHVDQRLLIPMPGSVDQGGGVRSLNLATSVGVVLFEALRQ 153


>gi|221632050|ref|YP_002521271.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
           5159]
 gi|221155367|gb|ACM04494.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
           5159]
          Length = 217

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L +     N+  V R+     L ++ LV   + +P E + + S +A   ++ +    
Sbjct: 25  TVVLENVHDPHNVSAVLRSCDAVGLLRVHLVYTLEEFP-ELSENVSGSALKWLE-LVFHP 82

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++ EA          T           +     + L +       V ++FG E+ G+++E
Sbjct: 83  SI-EACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTK------PVALVFGNEQRGVSDE 135

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            +A ++     P+  +  SLNIS A  + ++E +    ++      + +    +  L  +
Sbjct: 136 AVAGADGNFVIPMMGMVRSLNISVACAVSLYEALRQRRLAGHYARPKLSPIELEERLQRW 195

Query: 196 LDYLEISL 203
           L+    +L
Sbjct: 196 LEREGRAL 203


>gi|22123992|ref|NP_667415.1| hypothetical protein y0071 [Yersinia pestis KIM 10]
 gi|21956733|gb|AAM83666.1|AE013608_1 hypothetical protein y0071 [Yersinia pestis KIM 10]
          Length = 194

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 36/170 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66
           I+L +P++  N G + R   N    QL L+ P      +K    +           +   
Sbjct: 36  IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHD 94

Query: 67  V---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               +DS ++  + + A      ++A T +          P  +A      +    N  +
Sbjct: 95  YQAFLDSEKL-DSTQPA-----RLFALTTKG--------TPAHSA------VSYQANDYL 134

Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG E  GL    +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 135 LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 184


>gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
           12057]
 gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
           12057]
          Length = 249

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 22/178 (12%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    K P+ + L       N G +AR      +  + +        +  A  +SA A
Sbjct: 88  PFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAVDAVIIPAKNSVSVNADAMKTSAGA 147

Query: 65  DCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +   R   +LK  +     +  H + AT               E       +     
Sbjct: 148 LHTLPVCR-EQSLKGTLQFLKDSGFHIVAAT---------------EKGDYDYTKADYTG 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++    +++
Sbjct: 192 PMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQRNNANQ 249


>gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 246

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 34/179 (18%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P L    K P+ ++      V      N G +AR      +  + +        +  A  
Sbjct: 88  PFLFEEGKNPLFVMLDGVTDVR-----NFGAIARTCECAAVDAVIIPAKGSVTVNADAMK 142

Query: 60  SSANADCVI-----DSVRVF-SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
           +SA A  V+      +++V    LK+  +    + AT               E       
Sbjct: 143 TSAGALHVLPVCREQNLKVTLQYLKD--SGFRIVAAT---------------EKGDYDYT 185

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +      + II G E  G++ E +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 186 KADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|315302368|ref|ZP_07873242.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL
           F6-596]
 gi|313629255|gb|EFR97514.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL
           F6-596]
          Length = 169

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 33/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLTY 60

Query: 74  FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + ++ E         F + T        + V +         +   + +N   IFG+E  
Sbjct: 61  YDSIDEFFEKNQGGEFYFIT-----KFGRHVYS-------DIDYSDTSKNYFFIFGKETT 108

Query: 131 GLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL       NEE       +  P+     SLN+S    ++ +E +   
Sbjct: 109 GLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 151


>gi|296137027|ref|YP_003644269.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
           K12]
 gi|295797149|gb|ADG31939.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
           K12]
          Length = 156

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 35/168 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G V R   N   T L LV P      +K    +      +D    ++ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLCANTGCT-LHLVEPLGFSLDDKQLRRAG-----LDYHE-YAT 56

Query: 77  LK-----EAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           L+     +A+          ++A T R      SV    E                 +FG
Sbjct: 57  LQTHASWDALMQTLQPRPERLFAFTTRGSRLIGSVRF--EPGDY------------FVFG 102

Query: 127 RERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL++   E+ A +  +   P+     SLN+S +V + V+E    
Sbjct: 103 AETRGLSDAVREQFAPAQRL-RLPMREGQRSLNLSNSVAVAVFEAWRQ 149


>gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 178

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + +++ K P +IIL + +   N+G V R    F + ++ L       P +  R ++  A
Sbjct: 17  EEFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPPHKDIRKTALGA 76

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNV 121
              +    V               A   R + +   +LA +  E AI+LN  +       
Sbjct: 77  TETVVWEYVNDT-----------VALVERLKEDHVKILAIEQAEDAIMLNTFKPEPNTTY 125

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++FG E  G+  + ++ S+A+I  P      SLNIS +V +++W+   
Sbjct: 126 AVVFGNEVKGVQQDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMWDLAM 174


>gi|291326958|ref|ZP_06126486.2| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291312042|gb|EFE52495.1| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 226

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 24/158 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82
             N+  + R+     + Q+        WP ++ + S ++A      V++   ++ +EAIA
Sbjct: 19  PHNVSAIVRSADAVGIHQIH-----AIWPDQQVKLSVSSAAGSNSWVKIISHTSTEEAIA 73

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            +      + AT     N  +  +  +E    L           I+ G+E+ G++ + +A
Sbjct: 74  HIKSQNMQVLAT-----NLSEHAVDFREIDYTL--------PTCIMMGQEKTGISQQALA 120

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L++  I  P+  +  SLN+S A  L+++E       + 
Sbjct: 121 LADKHIIIPMAGMVQSLNVSVASALILYEAQRQRQQAG 158


>gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 282

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 72/180 (40%), Gaps = 20/180 (11%)

Query: 1   MTPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           M P   ++   A+  V+I  +VD     NIG + R+     +  + L        + +A 
Sbjct: 108 MLPSVEEVCREARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAV 164

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLH-FIYATTA-RNRNNFKSVLAPKEAAIVLNERIF 116
             S  +  ++        L  +++ L+ + + T A    ++  S+  P   A        
Sbjct: 165 RVSMGSVFLLPWTW----LDGSLSGLNKYGFRTAAMALSDHSISIDDPVLTAE------- 213

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + I+ G E  GL +E I  ++ ++  P++    SLN++ A  +  W+     +  +
Sbjct: 214 --PKLAIVMGTEGDGLPHETITEADYVVRIPMSHGVDSLNVAAASAVAFWQLRAQGLRET 271


>gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431]
 gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327]
          Length = 206

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 7   PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 62  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 112

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 165


>gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 245

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N+    +++L       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCA-VIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            V+  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 EVVPLIRV-TNLARTLRDLQQSHNIWVVGTAG--------------EATETLYQTKLIGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 192 LALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRL 244


>gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39]
 gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39]
          Length = 229

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|117923674|ref|YP_864291.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
 gi|117607430|gb|ABK42885.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
          Length = 174

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 17/169 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           AP L ++     ++L  P++  N G + R         L LV P        A   +   
Sbjct: 14  APTLPDTLLH--VVLYRPEIPPNTGNIQRICAATG-AMLHLVGPIAFRLDNAALKRAGMD 70

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                 V+ +           + +    +        ++ K        R  +G    ++
Sbjct: 71  YRQWVDVQRYD---------DWAHCLRMQPLGVRWIPISTKATQGYHTMRYQAGDR--LL 119

Query: 125 FGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           FG E  GL   EI  +  +  +  P+ P   SLN++  V ++++E +  
Sbjct: 120 FGSEGSGLP-AEIHQALGHNAVRVPMLPRARSLNLANTVAVVLYEALRQ 167


>gi|325266642|ref|ZP_08133319.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982085|gb|EGC17720.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 294

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 21/178 (11%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P AP+  +      ++L   Q   N+G V R+     + Q+ L        S K   + 
Sbjct: 136 PPVAPESPDY-----VLLDRVQDAGNVGTVLRSAAAAGIRQIVLGEGCADAYSPKVLRAG 190

Query: 62  ANADCVID-SVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A  ++    RV   L E  A   H +YAT     +  +  L  +              
Sbjct: 191 MGAHFLLHIQERVC--LTEWCARYPHAVYATAL---DGNRPALLYQLDLR---------A 236

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
               IFG E  G++ E IAL+   +  P+     SLNI+QA  + ++E M        
Sbjct: 237 PCAWIFGNEGSGVSPELIALAGRSVKIPMQGATESLNIAQAATVCLFEQMRQRWQQQP 294


>gi|283787717|ref|YP_003367582.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282951171|emb|CBG90863.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 229

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A++
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVS 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQVLATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|168056477|ref|XP_001780246.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668300|gb|EDQ54910.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 190

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G +AR+   F ++++ LV  R  +      +  ++   +    R F  L  A+  L 
Sbjct: 14  HNLGTLARSATAFGVSEIILVG-RKDFN-----AFGSHGATLHLQFRHFQTLPAAVKYL- 66

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                  +++N     +   E A  +++  F+G +   + G E  GL+++E+ + +  + 
Sbjct: 67  -------KDKNVSICGVEITEGAAGVHKYPFTG-STAFVLGNEGTGLSDKEMEICDFFVY 118

Query: 146 FPVN-PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            P N P   SLN++ A  +++ +    +     +   ++   A +
Sbjct: 119 IPQNGPGTASLNVTVAASIVLHQFAVWAEFPERERDGQKFVVADR 163


>gi|119484369|ref|ZP_01618986.1| spoU protein [Lyngbya sp. PCC 8106]
 gi|119457843|gb|EAW38966.1| spoU protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           +Q   +   +IL D     N     R   +F +  + ++  R+ +   +  S  ++    
Sbjct: 29  VQQRTRQLTVILEDIYQPHNASACLRNCDSFGVQDVHIIENRNDFDLNREVSLGSHRWLT 88

Query: 65  -----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                +  I++ ++   L++  +  + I ATT            P E  I + E+I   +
Sbjct: 89  ISRYNEPKINNTKIC--LEKLKSQGYKIVATT------------PHEEEITI-EQISVEE 133

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            +G++FG E  GL+++ ++ ++ ++  P+     S NIS +V L ++E 
Sbjct: 134 KLGLMFGTELNGLSDDAVSQADYLVRIPMVGFSESFNISVSVALCLYEI 182


>gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
 gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
          Length = 292

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 12/171 (7%)

Query: 7   QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           Q + ++  PVI++ D      N+G + R         + +   R    +      +A A 
Sbjct: 129 QAKANSDEPVIVIADSISDPHNLGAIIRTAEALGCQGMIIPQRRAAGVTSTVSKVAAGAL 188

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                 RV  NL  A+  L             F       E    L +  F G  +G++ 
Sbjct: 189 ESFPVARVV-NLSRALETL---------KAEGFWIYGTVSEGGKRLQDFNFRGA-IGLVI 237

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  GL+       + ++S P+    PSLN S A  + ++E         
Sbjct: 238 GSEGSGLSLLTQRCCDELVSIPLGGKTPSLNASVAAAINLYEIYRQRWSEK 288


>gi|220913205|ref|YP_002488514.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219860083|gb|ACL40425.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 155

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 25/170 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+  +P++  N G   R        +L LV P  G+    A+   A  D   +  V V 
Sbjct: 3   RILFHEPEIPGNTGNAIRLAAITG-AELHLVEPL-GFDFSDAKLRRAGLDYHDLAVVTVH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             L++A   L    +YA T+                      I       ++FGRE  GL
Sbjct: 61  PTLEDAWRHLQPERVYAFTS--------------DGTASYTDIAYQPGDVLMFGRESDGL 106

Query: 133 TNEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                  S+  ++     P+ P   SLN++ A  + V+E       +  K
Sbjct: 107 PAG--VKSDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQQGFAGAK 154


>gi|228475926|ref|ZP_04060636.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           SK119]
 gi|228270081|gb|EEK11551.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           SK119]
          Length = 156

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +       + V + 
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGL 132
               E I     +         N K  L  K      ++  FS   +    IFGRE  GL
Sbjct: 59  -TYHENIESFFEV--------TNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGL 109

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      ++  +  P++    SLN+S    L+++E +   
Sbjct: 110 PDWVKEKYADTALRIPMSDHIRSLNLSNTAALLIYEALRQQ 150


>gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 230

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 83/207 (40%), Gaps = 31/207 (14%)

Query: 1   MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++ N  +  + I ++      NI  V R      + Q+        WP+ 
Sbjct: 1   MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVH-----AIWPTS 55

Query: 56  KARSS--SANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAI 109
           + ++   SA        V+    +++A+  L      + AT     N  +  +  +E   
Sbjct: 56  RMKTLVSSAAGSNSWVQVKTHRTIQDAVGHLKNEGMQVLAT-----NLSEHAVDFRE--- 107

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                I   +   I+ G+E+ G+T E + L++  I  P+  +  SLN+S A  L+++E  
Sbjct: 108 -----IDYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196
               ++     + +++P  + E    L
Sbjct: 163 RQRQIAGMY--QREDSPLDEEEQQRLL 187


>gi|18310293|ref|NP_562227.1| hypothetical protein CPE1311 [Clostridium perfringens str. 13]
 gi|18144973|dbj|BAB81017.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 153

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 23/160 (14%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++ +N G +AR     N   ++L ++ P      +K    +         +   
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTN---SKLHIIKPMGFVIDDKHLKRA--GLDYWSQLDLE 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  + ++ +             +   K +      A    + +   +   I+FGRE  G+
Sbjct: 60  IHESYEDFMK------------KYGDKKIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGV 107

Query: 133 TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
             E++  ++  I   + N    SLN+S  V ++ +E +  
Sbjct: 108 P-EDVHNAHHGIKVQMINTTTRSLNLSNTVAIIAYEALRQ 146


>gi|319785734|ref|YP_004145209.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464246|gb|ADV25978.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 158

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++L  P++  N G V R   N    +L L+ P      ++    +       +    +V 
Sbjct: 8   VLLYQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFSLEDRQLRRA--GLDYHEYASLQVH 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+             R   K + A      V +++         +FG E  GL  
Sbjct: 65  PDLATALE------------RIAPKRLFALSTRGQVRHDQPAYADGDAFLFGCETRGLPE 112

Query: 135 EEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + +     +  +   P+ P   SLN+S AV ++V+E       +  
Sbjct: 113 DVLGSIPEAQRL-RLPMRPGNRSLNLSNAVAVLVFEAWRQHGFAGG 157


>gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
 gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
          Length = 218

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 19  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 74  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177


>gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
 gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
          Length = 218

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 19  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 74  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177


>gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v]
          Length = 229

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1]
          Length = 218

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 19  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 74  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177


>gi|212696108|ref|ZP_03304236.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676737|gb|EEB36344.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 152

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L+ P+   N+G ++R       ++L L+ P     S K+   +       D   + V 
Sbjct: 4   IVLISPEHPGNVGNISRTCVLTE-SRLHLIRPFKFDFSNKSLKKA--GIDYWDKLDLVVH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E      ++           K++   +  +      I        IFGRE+ G+  
Sbjct: 61  DSLDEF---FTYV---------KDKNIYLIETGSDKNYADISYKDGDYFIFGREKEGIEK 108

Query: 135 EEIALS-NAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171
           E +      I + P+      SLN++ +V ++++E +  
Sbjct: 109 EILDKYKEKIYTIPMTKKLNRSLNLANSVAIVLYEGLRQ 147


>gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 179

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 14/165 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      +I+L + +   N+G V R    F + ++ L       P    + ++  A   +
Sbjct: 21  EAEKTPLIIVLDNIRSLNNVGSVFRTADAFLVEKVYLCGITATPPHRDIQKTALGATDAV 80

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNVGIIF 125
               V  +            A + R +     + A +  E A++L++     G+   ++F
Sbjct: 81  AWEYVEDS-----------VALSQRLKEQGVKLCAIEQAEDAVMLDKFTPVKGERYAVVF 129

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+  E ++LS+ ++  P      SLNIS +  +++W+   
Sbjct: 130 GNEVKGVQQEIVSLSDTVLEIPQVGTKHSLNISVSAGVVIWDIFS 174


>gi|314936092|ref|ZP_07843439.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           subsp. hominis C80]
 gi|313654711|gb|EFS18456.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           subsp. hominis C80]
          Length = 156

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +       + V + 
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGL 132
               E I     +         N K  L  K      ++  FS   +    IFGRE  GL
Sbjct: 59  -TYHENIESFFEV--------TNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGL 109

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      ++  +  P++    SLN+S    L+++E +   
Sbjct: 110 PDWVKEKYADTTLRIPMSDHIRSLNLSNTAALLIYEALRQQ 150


>gi|281355511|ref|ZP_06242005.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281318391|gb|EFB02411.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 157

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV P++ +N G + R   +   T+L LV P  G+  E      A  D      + ++ 
Sbjct: 6   IVLVAPEIPQNTGTIGRLCVSTE-TRLHLVRPL-GFSLEDKYVKRAGMDYWPHLDLTIYE 63

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N +E +             +N   ++L                    ++FGRE  GL  E
Sbjct: 64  NWEEFLK------------KNPEANLLFISTKGETCFWDAQYRPGDYLVFGRESSGLPPE 111

Query: 136 EIALS-NAIISFPVNPLFP-SLNISQAVLLMVWECME 170
                 + +   P+N  F  SLN++ A  ++++E + 
Sbjct: 112 FYDRYRSRLYRIPMNGRFHRSLNLANAASIVLYEALR 148


>gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536]
 gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026]
 gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
 gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026]
 gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042]
 gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
          Length = 229

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|28872435|ref|NP_795054.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855690|gb|AAO58749.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 151

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L    E I +      TT  +R    +  AP +                 +FG E  G
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKGSRPFHDASFAPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +  LS+   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|307708135|ref|ZP_07644602.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis
           NCTC 12261]
 gi|307615581|gb|EFN94787.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis
           NCTC 12261]
          Length = 167

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             E++ D          ++   K  L  K A  V ++  + + ++   +FGRE  GL  E
Sbjct: 60  FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTDEDHYFLFGREDKGLP-E 110

Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
           23834]
 gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
           23834]
          Length = 258

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 13/168 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P     A+   ++L   Q   NIG + R+     + Q+ L        S K   +   A 
Sbjct: 104 PTEPFDAEADCVVLERIQDPGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRAGMGAH 163

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  + V  +L       H     TA +RN+             L            +F
Sbjct: 164 FAL-RLFVEPDLAAWRERCHVPLLATALHRNSVSLYD------CDLRA------PAAWLF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G++   +A ++ ++  P+     SLN++ A  + ++E M   +
Sbjct: 211 GNEGAGVSETMLAAASRLVHIPMAVQTESLNVAMAATVCLFEQMRQRL 258


>gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
           49626]
 gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
           49626]
          Length = 323

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       N G + R+        + + N R       A  +SA A   +   RV S
Sbjct: 172 VVVLDHVTDEGNFGAIVRSAEVVGAAGVVIANARAAQVGVGAYKTSAGAVLHVPIARV-S 230

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           N+  A+ +L     +    T              E A         G  + ++ G E  G
Sbjct: 231 NVSRALEELKAAGFWTCGAT--------------EHAADDVWSAPLGGRLALVMGSEGAG 276

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++   +   +     P      SLN++QA  +M +E +  
Sbjct: 277 ISRLVLETCDFACKLPQRGKIESLNVAQATTVMCYEWLRR 316


>gi|56475995|ref|YP_157584.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum
           EbN1]
 gi|56312038|emb|CAI06683.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum
           EbN1]
          Length = 154

 Score = 69.7 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G   R   N    +L LV P     S++  + +      + ++ V  +
Sbjct: 4   IVLFQPEIPPNTGNTIRLAANTG-ARLHLVRPLGFDLSDRQLARAGLDYHDLTTLTVHDD 62

Query: 77  LKE---AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 A+A       +T  R R +                      +  ++FGRE  GL
Sbjct: 63  WNACLSALAGRRLLALSTKGRTRYDLVDYR----------------ADDVLLFGRETSGL 106

Query: 133 TNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +        +  P+ P   S+N+S AV ++V+E    
Sbjct: 107 PAEVLDSVPDMQTLRIPMCPANRSVNLSNAVAVVVFEAWRQ 147


>gi|226366171|ref|YP_002783954.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226244661|dbj|BAH55009.1| rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 282

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 6/170 (3%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   +L+  +   V++   P    N+G + R+   F    + +V         ++  +S 
Sbjct: 118 PRLKELRLQSAPLVVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRAST 177

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +  V   S++ E +A          R       ++   E   V  +    G    
Sbjct: 178 GSLFAMP-VVTVSSVDEILAFRD-----ARRASGTELHIVGTDETGSVTIDAHDFGGGTV 231

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G++       + +++ P+     SL    A  + ++E     
Sbjct: 232 LVIGNETRGMSAAWRNACDTVVNIPIGGAASSLGAPSAGAVALYEIARQR 281


>gi|289623912|ref|ZP_06456866.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651133|ref|ZP_06482476.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|289672258|ref|ZP_06493148.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae FF5]
 gi|298484786|ref|ZP_07002886.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302188528|ref|ZP_07265201.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae 642]
 gi|298160640|gb|EFI01661.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330868936|gb|EGH03645.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330900934|gb|EGH32353.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330954785|gb|EGH55045.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae Cit 7]
 gi|330980654|gb|EGH78757.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 151

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N   T L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCT-LHLIEPLGFELDDKRLRRA--GLDYHEYATLQTH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L    E I +      TT  +R    +   P +                 +FG E  G
Sbjct: 61  ADLASCLEKIGNPRLFAFTTKGSRPFHDASFEPGD---------------AFLFGPESRG 105

Query: 132 LTNEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +  LS+   +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADILDSLSSEHRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905]
 gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82]
 gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74]
 gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671]
 gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           4343-70]
 gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218]
 gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227]
          Length = 206

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 7   PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 62  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 112

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 165


>gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
 gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
          Length = 249

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 63/183 (34%), Gaps = 32/183 (17%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P L    K P++IL      V      N G +AR      +  + + +      +  A  
Sbjct: 88  PFLFEQGKNPLLILLDGLTDVR-----NFGAIARTCECAGVDAIIIPSKNSVSVNADAIK 142

Query: 60  SSANADCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           +SA A   I   R  +NL   I          + AT               E       +
Sbjct: 143 TSAGALHTIPVCR-ENNLTNTIKFLKDSGFKIVAAT---------------EKGDYDYTK 186

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                   II G E  G+  + +AL +  I  P+     SLN+S A  ++++E ++    
Sbjct: 187 ADYQGPTCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYEAVKQRGF 246

Query: 175 SSE 177
             E
Sbjct: 247 GEE 249


>gi|242243076|ref|ZP_04797521.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|242233424|gb|EES35736.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 156

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G +AR       LT L L+ P      +K    +       + V +  
Sbjct: 5   IVLYQPEIPANTGNIARTCA--GTLTHLHLIKPLGFSTEDKMLKRA--GLDYWEHVNITY 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWG 131
             +++E  A+                  L  K      ++  FS   ++   IFG+E  G
Sbjct: 61  HDSIEEFFAN------------TEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTG 108

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +      +   +  P++    SLN+S    L+++E +   
Sbjct: 109 LPDWVKEKYAKTALRIPMSDNIRSLNLSNTAALLIYEALRQQ 150


>gi|169349687|ref|ZP_02866625.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552]
 gi|169293762|gb|EDS75895.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552]
          Length = 169

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV P + +N G + R     N T L ++ P      +K    +   D V D  +RV+ 
Sbjct: 4   IVLVHPAIPQNTGNIMRTCVATN-TVLHIIKPMSFDLDDKKMKRA-GLDYVKDLDLRVYE 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           N +E +     + HF           +  +    +      +   S  +  + FG E  G
Sbjct: 62  NYEEFVRKNPGEYHFF--------TRYSHLCFTDQ------DFSDSSTDHYLFFGHEHDG 107

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           +  E +    ++ +  P++    SLN+S    + ++E +      +   V+ Q 
Sbjct: 108 IPKEILTKHLDSCLRIPMSDKVRSLNLSNCAAICIYEVLRQQNYPNLSKVEVQK 161


>gi|307704142|ref|ZP_07641067.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307622300|gb|EFO01312.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 167

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             E++ D          ++   K  L  K A  V ++  + + ++   +FGRE  GL  E
Sbjct: 60  FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTDEDHYFLFGREDKGLP-E 110

Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|220903872|ref|YP_002479184.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868171|gb|ACL48506.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 250

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 74/193 (38%), Gaps = 17/193 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +      ++L +     N+  + R+   F ++++ L      +P    R +SA+A   
Sbjct: 71  LAHRQPDLTLVLANIHDPHNVSAIYRSCDAFGVSRVNLYYTNTPFP-ALGRKTSASARKW 129

Query: 68  IDSVRVFSN--LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++S R   +  L E++   +  + AT+       + +                 +   +I
Sbjct: 130 VESARHKDSAALMESLRGQNMQVLATSCSP--TARPLRDWDFT-----------RPTAVI 176

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            G E  G+  E + +++  +  P+  +  S N+S A  +++ E       +         
Sbjct: 177 MGNEHSGVEPELLQMADGELYIPMYGMIQSFNVSVAAAIILSEAARQREAAGMYATPRMA 236

Query: 185 TPATKGELLSFLD 197
             A + +L  +L+
Sbjct: 237 AAALEEKLQEWLE 249


>gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
           13941]
 gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
           13941]
          Length = 235

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 18/175 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA 64
           PQ+     G ++++   Q   N+G + R+     + Q L  V   D + + K   S+  A
Sbjct: 76  PQIPPGKPGLILVIDAVQDPGNLGTLLRSAEAVGVAQTLCSVGTVDVY-APKVVRSAMGA 134

Query: 65  DCVI--DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +    +  + E +AD+  +YA              P  AA          Q   
Sbjct: 135 HIRLSIEQDVRWDEIGERLADVDHVYAA-------DPHARMPYYAADWR-------QPSA 180

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++ G E  GL+     L+   I+ P+     SLN++ A  ++++E +    +   
Sbjct: 181 LLVGNEAHGLSEAARRLATKPITIPMCGRAESLNVAVAASVILFEALRQRTLGRG 235


>gi|322387233|ref|ZP_08060843.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141762|gb|EFX37257.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 167

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 32/167 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLEIYFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI------IFGRE 128
             L E                   K +           E+++S  +  I      +FGRE
Sbjct: 62  DCLDE-----------------FMKKIDGQLYLISKFAEKVYSDADFTIEGNHYFLFGRE 104

Query: 129 RWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             GL  EE    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 105 DKGLP-EEFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|300857062|ref|YP_003782046.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300437177|gb|ADK16944.1| predicted rRNA methylase, SpoU class [Clostridium ljungdahlii DSM
           13528]
          Length = 155

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++ +N G +AR       ++L L+ P      EK    +         + +   
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTG-SKLHLIKPLGFSLDEKHLRRA--GLDYWKYLDLTLY 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +  L+E      F ++TT  +  NF               +   G    I+FGRE  G
Sbjct: 62  DSYEELREKYKGGTFYFSTT--HGKNFYH-----------EAKFKDGD--FIVFGRETCG 106

Query: 132 LTNEEI-----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  +EI          +     +    SLN+S  V ++ +E +  
Sbjct: 107 LP-DEIRDSAPEKCIRVPMIKTSTR--SLNLSNTVAIVAYEALRQ 148


>gi|300779738|ref|ZP_07089594.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300533848|gb|EFK54907.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 153

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +I  +P +  N G   R       T L LV P      +K    S      +  V++  +
Sbjct: 3   VIFDNPVIPGNTGNTIRLCAGTGFT-LHLVKPLGFLLDDKHLKRSGLDYHDLADVQIHED 61

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           ++   A   D      TT   R+                  +       ++FG E  GL 
Sbjct: 62  IESCFASLIDARIFAFTTHTTRHYT---------------DVEYRDTDALLFGTEPTGLP 106

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E          +  P+ P   S+N++ +  +  +E    
Sbjct: 107 EEHSHHPRVTDQLRIPMLPGRRSMNLANSAAVASYEAWRQ 146


>gi|95930687|ref|ZP_01313421.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
 gi|95133339|gb|EAT15004.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
          Length = 158

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+LV+P++  N G +AR        T L LV        ++    +         V +  
Sbjct: 8   IVLVEPEIPPNTGNIARLCA--GTQTHLHLVGKLGFSLDDRYLKRA--GLDYWPHVPLHR 63

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L++            A     +       + A +++ +        I+FG+E  GL 
Sbjct: 64  WDSLEQLEQ---------AYPEGRWW---YTSKTAHLVHSQATFHPGDFIVFGKETKGLP 111

Query: 134 NEEIAL-SNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
            E +       +  P++     SLN+S +  ++++E +  
Sbjct: 112 KELLERHPQRCLRIPMSCDAVRSLNLSTSAGIVLYEALRQ 151


>gi|45439935|ref|NP_991474.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809463|ref|YP_653379.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|108813940|ref|YP_649707.1| methyltransferase [Yersinia pestis Nepal516]
 gi|145601075|ref|YP_001165151.1| methyltransferase [Yersinia pestis Pestoides F]
 gi|150260867|ref|ZP_01917595.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
 gi|153949233|ref|YP_001399082.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|162420361|ref|YP_001604714.1| RNA methyltransferase [Yersinia pestis Angola]
 gi|165926204|ref|ZP_02222036.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936183|ref|ZP_02224752.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011519|ref|ZP_02232417.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213678|ref|ZP_02239713.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398819|ref|ZP_02304343.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419141|ref|ZP_02310894.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426653|ref|ZP_02318406.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468388|ref|ZP_02333092.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis FV-1]
 gi|170026342|ref|YP_001722847.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|218927290|ref|YP_002345165.1| putative methyltransferase [Yersinia pestis CO92]
 gi|229836184|ref|ZP_04456352.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
 gi|229839920|ref|ZP_04460079.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842002|ref|ZP_04462157.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229904469|ref|ZP_04519580.1| predicted rRNA methylase [Yersinia pestis Nepal516]
 gi|270488468|ref|ZP_06205542.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
           D27]
 gi|294502174|ref|YP_003566236.1| putative methyltransferase [Yersinia pestis Z176003]
 gi|123777848|sp|Q74Y93|TRML_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|45434790|gb|AAS60351.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108777588|gb|ABG20107.1| methyltransferase [Yersinia pestis Nepal516]
 gi|108781376|gb|ABG15434.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|115345901|emb|CAL18760.1| putative methyltransferase [Yersinia pestis CO92]
 gi|145212771|gb|ABP42178.1| methyltransferase [Yersinia pestis Pestoides F]
 gi|149290275|gb|EDM40352.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
 gi|152960728|gb|ABS48189.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353176|gb|ABX87124.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis
           Angola]
 gi|165915797|gb|EDR34405.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922064|gb|EDR39241.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989665|gb|EDR41966.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205080|gb|EDR49560.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963135|gb|EDR59156.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051323|gb|EDR62731.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054342|gb|EDR64159.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752876|gb|ACA70394.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis YPIII]
 gi|229678587|gb|EEO74692.1| predicted rRNA methylase [Yersinia pestis Nepal516]
 gi|229690312|gb|EEO82366.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696286|gb|EEO86333.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706632|gb|EEO92638.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
 gi|262360253|gb|ACY56974.1| putative methyltransferase [Yersinia pestis D106004]
 gi|262364200|gb|ACY60757.1| putative methyltransferase [Yersinia pestis D182038]
 gi|270336972|gb|EFA47749.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
           D27]
 gi|294352633|gb|ADE62974.1| putative methyltransferase [Yersinia pestis Z176003]
 gi|320013423|gb|ADV96994.1| putative rRNA methylase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 162

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 36/170 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66
           I+L +P++  N G + R   N    QL L+ P      +K    +           +   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHD 62

Query: 67  V---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               +DS ++  + + A      ++A T +          P  +A      +    N  +
Sbjct: 63  YQAFLDSEKL-DSTQPA-----RLFALTTKG--------TPAHSA------VSYQANDYL 102

Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG E  GL    +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 103 LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 152


>gi|258404583|ref|YP_003197325.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
 gi|257796810|gb|ACV67747.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
          Length = 152

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L +P++  N G + R       T L L+ P  G+  E      A  D           
Sbjct: 3   IVLFEPEIPPNTGNIGRLCAAT-TTPLHLIEPL-GFRLEDRYLKRAGLDYWPHLDLTVWP 60

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +  +++     + A++AR    + +V    E                I+ G E  GL
Sbjct: 61  DWPSFCDSLPSGARLVASSARQGAAYHTVAFRTED--------------YIVLGPESSGL 106

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +     +  ++  P+     SLN++ A  ++++E +  +
Sbjct: 107 PSAICEQAAELVRIPIWGQVRSLNLANATSVLLYEALRQT 146


>gi|294341204|emb|CAZ89605.1| putative RNA methyltransferase TrmH, group 2 [Thiomonas sp. 3As]
          Length = 156

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 35/168 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G V R   N   T L LV P      +K    +      +D    ++ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLCANTGCT-LHLVEPLGFSLDDKQLRRAG-----LDYHE-YAT 56

Query: 77  LK-----EAIADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           L+     +A+          ++A T R      SV                      +FG
Sbjct: 57  LQTHSSWDALMQTLQPRPERLFAFTTRGSRLIGSVRF--------------EPGDCFVFG 102

Query: 127 RERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL++   E+ A +  +   P+     SLN+S +V + V+E    
Sbjct: 103 AETRGLSDAVREQFAPTQRL-RLPMREGQRSLNLSNSVAVAVFEAWRQ 149


>gi|317508477|ref|ZP_07966145.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
 gi|316253225|gb|EFV12627.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
          Length = 154

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 25/163 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L +P++  N G + R        +L LV P     SE     +      +  V V  
Sbjct: 3   RVMLFEPRIAGNTGSMIRVSAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLAHVVVHP 61

Query: 76  NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +L  A+  +     F + T+   R++                 I   +   ++FG E  G
Sbjct: 62  DLATALRAVPGARVFAFTTSGSARHSD----------------IAYQEGDVLLFGPEPTG 105

Query: 132 LTNEEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  EE+A    +   +  P+     SLN++ A  L V+E    
Sbjct: 106 LP-EEVARHPRVAERLRIPMLAGRRSLNLANAATLAVYEAWRQ 147


>gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
 gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
          Length = 229

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+ 
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 84  -------THLKGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITEEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3]
 gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1]
 gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3]
 gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2]
          Length = 218

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 19  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 74  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177


>gi|261341783|ref|ZP_05969641.1| hypothetical protein ENTCAN_08264 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316153|gb|EFC55091.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 159

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +        +V    +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAGLDYHEFTAVVRHPD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +            +    + + A        +  +       ++FG E  GL    
Sbjct: 63  YAAFL------------DAEKPQRMFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPATI 110

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 111 LDALPAEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 267

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 15/172 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M        +++   V++L       N+G + R+   F    L +V P    P E    +
Sbjct: 107 MEDIIRMADSASSALVLVLDQVTDPHNVGAILRSAAAFGA--LAVVAPDRHAPDETGTLA 164

Query: 61  --SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             ++ A   +  VRV + ++ A+ D+          +  F +     +A   L E   SG
Sbjct: 165 KSASGALERMPLVRVTNVVR-ALEDM---------KKGGFWTAGLAADAPKTLAEAELSG 214

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E   
Sbjct: 215 -KVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALYEIRR 265


>gi|257068791|ref|YP_003155046.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256559609|gb|ACU85456.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 289

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 6/160 (3%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+ +    V++   P    NIG +AR++       L L           A  +S  +   
Sbjct: 126 LEPTGASLVVVFDRPSGPGNIGSLARSVDALGADALLLTGHSADAWDPAAIRASTGSLFA 185

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +  +R+  + +E +      + T  R      +VL   EA               ++ G 
Sbjct: 186 VPVMRL-PSHREVLD-----WLTRRRALGEPWTVLGLDEAGGHDLAAADLTGPTLLVVGN 239

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E  G+++      + I   P+     SLN S A  + ++E
Sbjct: 240 ETVGMSSGWREACDVIAEIPMTGAASSLNASVAGSVALYE 279


>gi|212550666|ref|YP_002308983.1| rRNA methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548904|dbj|BAG83572.1| putative rRNA methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 180

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
                +   K P V++L + +   N+G V R    F +  + L       P+ +   ++ 
Sbjct: 13  SKEDFKEVKKNPLVVVLDNIRSLNNVGSVFRTCDAFRVETVYLCGITAIPPNVEIHKTAL 72

Query: 63  NADCVIDS------VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            A+  ++       +R+   L +               +      +   E +I+L+E   
Sbjct: 73  GAEDSVNWKYSPITLRIVEELHQ---------------KGYQIIAVEQAEESIMLDEFQS 117

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 II G E  G+  E +   +A I  P      SLN+S    +++WE  +NS
Sbjct: 118 KYSKQAIILGNEVHGIDQEVMNQCDACIEIPQFGTKHSLNVSITAGIVIWEITKNS 173


>gi|27468455|ref|NP_765092.1| putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|57867280|ref|YP_188960.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|282875762|ref|ZP_06284629.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis SK135]
 gi|293366167|ref|ZP_06612853.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316002|gb|AAO05136.1|AE016749_82 putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|57637938|gb|AAW54726.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis RP62A]
 gi|281294787|gb|EFA87314.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis SK135]
 gi|291319689|gb|EFE60049.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329724859|gb|EGG61362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU144]
 gi|329734296|gb|EGG70611.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU045]
 gi|329737347|gb|EGG73601.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU028]
          Length = 156

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G +AR       LT L L+ P      +K    +       + V +  
Sbjct: 5   IVLYQPEIPANTGNIARTCA--GTLTHLHLIKPLGFSTEDKMLKRA--GLDYWEHVNITY 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWG 131
             +++E  A+                  L  K      ++  FS   ++   IFG+E  G
Sbjct: 61  HDSIEEFFAN------------TEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTG 108

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L        +   +  P++    SLN+S    L+++E +   
Sbjct: 109 LPEWVKEKYAKTALRIPMSDNIRSLNLSNTAALLIYEALRQQ 150


>gi|88799598|ref|ZP_01115174.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
 gi|88777683|gb|EAR08882.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
          Length = 154

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 25/169 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R   N    QL L+ P      EKA   +       +  ++   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIEPLGFSMDEKALRRA--GLDYHEFAQIRIW 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +    +          +T  ++   +    P +                ++FG E  G
Sbjct: 61  PDYPTFLQQAQPPRLFALSTKGSQGYSEVAFQPGDY---------------LMFGPETRG 105

Query: 132 LTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           L  +  E      ++  P+     SLN+S  V +MV+E    +  S  +
Sbjct: 106 LPADIRESLPPEQVLRLPMLADSRSLNLSNTVAVMVYEAWRQNGFSGHR 154


>gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 181

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 14/165 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      ++IL + +   N+G V R    F + ++ L       P+++   ++  A   +
Sbjct: 19  KAEKTPLIVILDNVRSLNNVGSVFRTCDAFLVEKIYLCGITATPPNKEIHKTALGATDSV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNVGIIF 125
                   L+        +     R +     V++ +  E A++LN+ +  +     +IF
Sbjct: 79  AWEYAEDTLQ--------VV---ERLKAEGVCVISIEQAEKAVMLNDFQPKAHTQYAVIF 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+  E ++LS+ +I  P      SLN+S +  +++WE  +
Sbjct: 128 GNEVKGVAQEVVSLSDGVIEIPQYGTKHSLNVSVSAGIVIWEMTK 172


>gi|299689343|pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
 gi|299689345|pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
           Complex With S- Adenosyl-L-Homocysteine.
 gi|299689346|pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
           Complex With S- Adenosyl-L-Homocysteine
          Length = 165

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 36/170 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66
           I+L +P++  N G + R   N    QL L+ P      +K    +           +   
Sbjct: 7   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHD 65

Query: 67  V---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               +DS ++  + + A      ++A T +          P  +A      +    N  +
Sbjct: 66  YQAFLDSEKL-DSTQPA-----RLFALTTKG--------TPAHSA------VSYQANDYL 105

Query: 124 IFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG E  GL    +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 106 LFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQ 155


>gi|288550202|ref|ZP_05969599.2| hypothetical protein ENTCAN_08219 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316108|gb|EFC55046.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 218

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 68/175 (38%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+   +A       SV+    + +A++
Sbjct: 19  PHNVSAIVRTADAVGVHEVHAV-----WPGARMRTMVSAAAGSNSWVSVKSHQTIGDAVS 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G++ E + L++ 
Sbjct: 74  HL--------KGRGMQVLATNLSDKAVDFRE-IDYTRPTCILMGQEKTGISQEALDLADR 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++    +  +    + +     +
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYARSSSMLPDEEQQRLLFE 178


>gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
 gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
          Length = 652

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G V R+        L L   R    +  A   +A A   +   RV +   +L E +
Sbjct: 394 PHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSL-EKL 452

Query: 82  ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            D  + +    A             E  + L +    G  V ++ G E  GL+       
Sbjct: 453 KDSGYRVIGLAA-------------EGDVTLMDVDLEGPLV-LVTGSEDQGLSLLTRRHC 498

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           + ++  P+  + PSLN S A  L V+E    + +           
Sbjct: 499 DQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPP 543


>gi|317478097|ref|ZP_07937272.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|316905695|gb|EFV27474.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 175

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            A+  +D  +   N  EA+ +L        ++       +   E +++L+E +    +  
Sbjct: 73  GAEFTVDW-KYVDNSVEAVDNL--------KSEGYIVYSVEQAEGSVMLDELVLDKTKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172


>gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
 gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86]
 gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
          Length = 229

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++   ++E +      +     +
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNTGMYLRENSMLPEAEQQRLLFE 189


>gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
           27560]
 gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
           27560]
          Length = 255

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +N  K  +++L   Q   N+G + R      ++ + +        + K   S+  +  
Sbjct: 104 EKRNKEKSCIVVLDRLQDPGNMGTIVRTGEAAGISGIIMSKDSADIYNPKVIRSTMGSIF 163

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +    +  +L  A+  L     TT                   L       ++  ++ G
Sbjct: 164 RVPFA-IVDDLAAAVDTLKDNGITT-----------YAAHLKGELYNSGSLTKDCALLIG 211

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            E  GL+ E  A ++ +I  P++    SLN + A  ++++E   
Sbjct: 212 NEARGLSEEISAKADKLIKIPMHGKVESLNAAIATAILMYEAAR 255


>gi|16272707|ref|NP_438925.1| putative RNA methyltransferase [Haemophilus influenzae Rd KW20]
 gi|145630511|ref|ZP_01786291.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|260579857|ref|ZP_05847687.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|260581580|ref|ZP_05849377.1| rRNA methylase [Haemophilus influenzae NT127]
 gi|1176303|sp|P44868|TRML_HAEIN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|28948421|pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A
           Truncated Sequence Homolog Of Trna (Guanosine-2'-O-)
           Methyltransferase (Spou)
 gi|28948677|pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A
           Methyltransferase With A Cofactor Bound At A Site Formed
           By A Knot
 gi|1573774|gb|AAC22424.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
 gi|144983901|gb|EDJ91343.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|260093141|gb|EEW77074.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|260095173|gb|EEW79064.1| rRNA methylase [Haemophilus influenzae NT127]
          Length = 160

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +         + + +  F   L  K        +   G    ++FG E  G+  
Sbjct: 61  KTFEAFLE--------SEKPKRLF--ALTTKGCPAHSQVKFKLGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|305664515|ref|YP_003860802.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
           HTCC2170]
 gi|88708532|gb|EAR00768.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
           HTCC2170]
          Length = 150

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I+L +P++  N G + R       + L LV P      +K    +         + +F  
Sbjct: 5   IVLFEPEIPNNTGNIGRLALATG-SNLHLVKPFGFELDDKRLKRA--GLDYWPHISLFTY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N++E      D + +Y ++                    +  I    ++ +IFG+E  G
Sbjct: 62  ENIEEFYKQHNDKNLVYFSS---------------HGEKNHWSIDYKDDMYLIFGKESVG 106

Query: 132 LTNEEIAL-SNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           L  E +   S+ +   P+ +    SLN++ AV + ++E +  
Sbjct: 107 LPKEILQNNSDKLYKIPLFSSKIRSLNLANAVGVTIYEGLRQ 148


>gi|289168639|ref|YP_003446908.1| rRNA methylase [Streptococcus mitis B6]
 gi|288908206|emb|CBJ23048.1| rRNA methylase [Streptococcus mitis B6]
          Length = 167

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             E++ D          ++   K  L  K A  V ++  + + ++   +FGRE  GL  E
Sbjct: 60  FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLP-E 110

Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|294660369|ref|NP_853100.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)]
 gi|284812027|gb|AAP56668.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)]
 gi|284930576|gb|ADC30515.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(high)]
          Length = 163

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 69/166 (41%), Gaps = 19/166 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--S 70
               ++L  PQ   N G +AR+   FN T L L++P   + +++    +       D  +
Sbjct: 3   SKINVVLYRPQDPRNAGNIARSCVGFNAT-LHLIHPFGFFITDERFKRA--GLDYWDHLN 59

Query: 71  VRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++ +++  + I     D +    T   N              I   E +   Q + ++FG
Sbjct: 60  LKQYADFDDFIKQNQIDENLFLFTKKANNYLSN---------IDFKEYLDHDQRIYLVFG 110

Query: 127 RERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +E  GL ++ +    + ++  P++    S N++ +V+  ++E    
Sbjct: 111 QETNGLPDQLLNKYQDNLVKIPMHNAIRSFNLANSVICALYELSRQ 156


>gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 269

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P AP++  +A    + L + +   N+G + R         + LV       S  A  ++
Sbjct: 111 PPPAPKV--NAGETWVALEEIRDPGNLGTIVRTADATGCAGVILVGTTCDPYSLDAVRAT 168

Query: 62  AN---ADCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
                A  ++   R  F +L+ A A    +  T    R +F+S+                
Sbjct: 169 MGSIFAVPIVKMERSAFISLQRAWAG--DVIGTHLTAREDFRSLYR-------------- 212

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +   I+ G E  GL++E  A    ++  P+     SLN++ A  LM+++  
Sbjct: 213 -EPQLIVMGGEGPGLSSEAAASCTKLVKIPMAGKLDSLNLAVATGLMLYQIR 263


>gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 261

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 32/179 (17%)

Query: 10  NSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADC 66
           N    P  I++    Q   NIG + RA   F   +  LV        S KA  +SA +  
Sbjct: 104 NDLSNPTFIVIADRIQDPGNIGTIIRAAEAFG-AEAVLVTHGTCNPFSNKALRASAGSIF 162

Query: 67  VIDSVRV-FSNLKEAIA--DLHFIY----AT-TARNRNNFKSVLAPKEAAIVLNERIFSG 118
            +  ++V    ++E ++   L+ +     AT ++ N +  K +                 
Sbjct: 163 FLPVIKVTVKEIEEFVSKYGLNLVITDLKATISSFNMDFTKPL----------------- 205

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
               I+FG E  G++ +  A+ +     P      SLN++ A   +++E +    + S 
Sbjct: 206 ---AIVFGNESKGVSQDLRAIKHTSCKIPHKGKAESLNVAMAATAILYEILRQRFLKSP 261


>gi|116515392|ref|YP_815944.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
 gi|116075968|gb|ABJ53688.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
          Length = 167

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             E++ D          ++   K  L  K A  V ++  + + ++   +FGRE  GL  E
Sbjct: 60  FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLP-E 110

Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|15902476|ref|NP_358026.1| rRNA methylase [Streptococcus pneumoniae R6]
 gi|15457998|gb|AAK99236.1| rRNA methylase [Streptococcus pneumoniae R6]
          Length = 180

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + ++  
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIY-- 72

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             E++ D          ++   K  L  K A  V ++  + + ++   +FGRE  GL  E
Sbjct: 73  FYESLEDFM--------SQMKGKLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLP-E 123

Query: 136 EIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 124 DFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 163


>gi|56180485|gb|AAV83207.1| rRNA methylase SpoU [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 69/153 (45%), Gaps = 16/153 (10%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIAD 83
            N+  V R+     + ++        W ++KAR S   A    + V++ +   + EA+  
Sbjct: 20  HNLSAVVRSADAIGVHEMH-----AIWLTKKARLSGGTALGSQNWVKIHNHKTVGEALE- 73

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                AT  R      + L+  E ++   E +   +   I+ G+E++G+T+E + +++  
Sbjct: 74  -----ATQGRGMQVVVTHLS--EHSVDFRE-VDYTKPTAILLGQEKYGVTDEALDIADYH 125

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  P+  +  SLN+S A  +M++E       + 
Sbjct: 126 VMIPMVGMVQSLNVSVAGAVMLYEAQRQREQAG 158


>gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
 gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
          Length = 176

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 14  STEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTAL 73

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            A+  +D  +  +N  EA+ +L        +N       +   E +I+LNE      +  
Sbjct: 74  GAEFTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKNRKY 124

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  
Sbjct: 125 AIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172


>gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 176

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P  ++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 14  STEEFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 73

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            A+  +D  +  +N  EA+ +L        +N       +   E +I+LNE      +  
Sbjct: 74  GAEFTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKSRKY 124

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  
Sbjct: 125 AIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172


>gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073]
 gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89]
 gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1]
 gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88]
 gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a]
 gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B]
 gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736]
 gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
 gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073]
 gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89]
 gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1]
 gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a]
 gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82]
 gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034]
 gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU
           83972]
 gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146]
 gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263]
 gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
          Length = 229

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523]
          Length = 250

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 13/158 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   NIG + R      L ++ L+N      + KA  +   A   +     FS
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEIILINGTVDPFNPKAIRAGMGAQFSLK----FS 160

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L E +ADL  I           K  L      +    + F   N  ++FG E  G+ + 
Sbjct: 161 YL-ETLADLKNI-----SKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDF 214

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            I         P      SLN++QA  + ++E +   +
Sbjct: 215 SIG---EKTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
           neapolitanus c2]
 gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
           neapolitanus c2]
          Length = 268

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 16/168 (9%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
            L ++   P    IL       N+G   R+     +    +++P+D     +  AR +++
Sbjct: 99  ALLDNLDEPAFLLILDGVTDPHNLGACLRSAEAAGVH--AVISPKDRAVGLTPTARKAAS 156

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  ++V +NL   +ADL                V A     + L E  F+ ++V 
Sbjct: 157 GAAERLPFIQV-TNLARTLADL---------KSRQIWIVGAAGGGMVSLYESDFAAESVA 206

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++ G E  GL        + +I  P+ P   SLN+S A  + ++E   
Sbjct: 207 LVMGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSVAAAVCLFEFRR 254


>gi|15838566|ref|NP_299254.1| tRNA/rRNA methylase [Xylella fastidiosa 9a5c]
 gi|9107078|gb|AAF84774.1|AE004016_8 tRNA/rRNA methylase [Xylella fastidiosa 9a5c]
          Length = 148

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 59/161 (36%), Gaps = 25/161 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSN 76
           L  P++  N G V R   N    +L L+ P      ++    +       +  R  V  N
Sbjct: 3   LYQPEIPPNTGNVIRLCANTG-ARLHLIEPLGFDLDDRRLKRA--GLDYHEYARMQVHPN 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+A      A     R  F   L+ +           +G     IFG E  GL +  
Sbjct: 60  LSSALA----AIA----PRRLF--ALSTRGQMRYDTPTFSTGD--AFIFGPETRGLPDTV 107

Query: 137 IALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   + I     +  P+ P   SLN+S AV +MV+E     
Sbjct: 108 L---HTIPESQRLYLPMQPQSRSLNLSNAVAVMVFEAWRQQ 145


>gi|224370833|ref|YP_002604997.1| SpoU [Desulfobacterium autotrophicum HRM2]
 gi|223693550|gb|ACN16833.1| SpoU [Desulfobacterium autotrophicum HRM2]
          Length = 291

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 17/159 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH- 85
           N+G + R+      + L L     G  +   R ++      +   +    L + + D+  
Sbjct: 146 NVGSIFRSCDAAGFSSLIL-GNTPGRENAAVRKTAMGTADWMPHTQTVD-LAQTLVDMKA 203

Query: 86  --FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             +   T        K                       ++ G E +G+++  +A+ + +
Sbjct: 204 QGYTI-TAVETAEQSKPYHDND-----------WHHRGVLVVGNEEYGISSHVLAVCDQV 251

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +  P+     SLN++ A  ++++              + 
Sbjct: 252 VHIPMFGRKNSLNVANAAAILMFHITTCLHAGHPDPGQH 290


>gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 14/173 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
            +N+  V R    F + +L ++  P    P ++ +  S NAD  +D VR +S+  E +A 
Sbjct: 55  PQNVNAVLRTCEAFGIQELHVIEGPMK--PYDRNKKISQNADKWVD-VRRWSSTGECLAH 111

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L        +            E A  L+   F+G  V ++FG E  G+++E +ALS+A+
Sbjct: 112 L--------KAEGFAIYATHLGEGARTLDALSFAG-KVALVFGNEHRGVSDEAVALSDAV 162

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
              P++    SLN+S A  + + + +E       ++       A       F 
Sbjct: 163 YVIPMHGFVQSLNVSVAAAISIAKAVERRAAERGRHGDLSELEAAALR-ERFY 214


>gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
          Length = 229

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|323339770|ref|ZP_08080040.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644]
 gi|323092849|gb|EFZ35451.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644]
          Length = 170

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+L +P +  N G +AR     N   T+L L+ P      +K    +       D V++ 
Sbjct: 5   IVLFEPLMPANTGNIARTCAGTN---TELHLIKPLGFSTDDKYMKRA--GLDYWDKVKIT 59

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL E +  +           +    V    E      +     +N   +FG+E  GL
Sbjct: 60  YHENLPEFLESMD--------ENDELYVVSKFAERTYADVDYTDESKNHYFLFGKETTGL 111

Query: 133 TNEEIALSNA---IISFPVNPL-FPSLNISQAVLLMVWECMENSIVSSEKNVK 181
              EI +       I  P N     +LN+S    ++++E +        + V 
Sbjct: 112 P--EIFMRKYEKKCIRIPQNDRNIRALNLSNTAAIVIYEALRQQSFPDLERVH 162


>gi|149372584|ref|ZP_01891696.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
 gi|149354627|gb|EDM43191.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
          Length = 232

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F +  L LV  + G   +K  +  A     +      SNL++ ++   
Sbjct: 54  HNTSAVMRSCDAFGIQDLHLVEEKFGKRVDKEIAMGAQKWVTLHR---HSNLEDCVS--- 107

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T +++       +P   A  L++  ++ +   I FG E+ GLT   +  ++A+I 
Sbjct: 108 -----TLKDKGYQIVATSPHADASYLHDFDYT-KKSAIFFGTEKDGLTEGVLEQADALIK 161

Query: 146 FPVNPLFPSLNISQAVLLM 164
            P+     SLNIS +  ++
Sbjct: 162 VPMYGFTESLNISVSAAII 180


>gi|71650563|ref|XP_813977.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878910|gb|EAN92126.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 392

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 16/164 (9%)

Query: 16  VIILVD-PQLGENIGMVARAMWNFNLTQL-----RLVNPRDGWP--SEKARSSSANADCV 67
           V + V+ P+   N+G + RA+  F  + L     RL+      P    +A   S+    +
Sbjct: 170 VFVAVENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGFSSPYVAI 229

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRN-----NFKSVLAPKEAAIVLNERIFSGQNVG 122
            D + +F  L+ A +   F+ A    +            L   +       R      V 
Sbjct: 230 PDIINLFEVLEGATSFEAFVVAVDMIDGATPLPLYRHPCLHALDGGARKRSRCTLPNLVV 289

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +FG E   +  E +A  ++ +  P      SLN++ AV ++++
Sbjct: 290 YLFGPEDGSIRQEVLARCHSAVFLPT---QGSLNLAAAVNVVLY 330


>gi|270295097|ref|ZP_06201298.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274344|gb|EFA20205.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 175

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAIPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            A+  +D  +   N  EA+ +L        ++       +   E +++L+E +    +  
Sbjct: 73  GAEFTVDW-KYVDNSVEAVDNL--------KSEGYIVYSVEQAEGSVMLDELVLDKTKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172


>gi|161761287|ref|YP_156756.2| tRNA guanosine-2'-O-methyltransferase [Idiomarina loihiensis L2TR]
          Length = 226

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 69/153 (45%), Gaps = 16/153 (10%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIAD 83
            N+  V R+     + ++        W ++KAR S   A    + V++ +   + EA+  
Sbjct: 31  HNLSAVVRSADAIGVHEMH-----AIWLTKKARLSGGTALGSQNWVKIHNHKTVGEALE- 84

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                AT  R      + L+  E ++   E +   +   I+ G+E++G+T+E + +++  
Sbjct: 85  -----ATQGRGMQVVVTHLS--EHSVDFRE-VDYTKPTAILLGQEKYGVTDEALDIADYH 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  P+  +  SLN+S A  +M++E       + 
Sbjct: 137 VMIPMVGMVQSLNVSVAGAVMLYEAQRQREQAG 169


>gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
 gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
          Length = 328

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 11/149 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L L +        K   +SA A   +    V  +L E + 
Sbjct: 180 QDPGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPKVLRASAGAWFRLPMA-VGGDLTEQL- 237

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T A+ +        P          +   Q   ++ G E  GL++   AL++ 
Sbjct: 238 -------TIAQQQGVQIVATLPDADLTYW--ELDFQQPTIVVLGNEGAGLSSSLTALADQ 288

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  P++    SLN++    LM++E    
Sbjct: 289 HVQIPLSGGVESLNVAICAALMLYEGQRQ 317


>gi|326803147|ref|YP_004320965.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651146|gb|AEA01329.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 178

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 13/160 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++  N G +AR     + T L L+ P      +K    +       D++ +   
Sbjct: 5   IVLFEPEIPANTGNIARTCAATD-THLHLIEPLGFQTDDKHLKRA--GLDYWDALDITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +LK  I  L        R               I        G+++ ++FG+E  GL  
Sbjct: 62  DDLKAFINYLD------GRPLYLISKFATKNYTDIDYMAHKKRGEDIFLMFGKETTGLPE 115

Query: 135 EEI-ALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
             +    +  +  P++      LN+S    + ++E +   
Sbjct: 116 AFMHEHEDQCLRLPMDDTHVRCLNLSNCAAICIYEVLRQQ 155


>gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010]
          Length = 229

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|315611850|ref|ZP_07886769.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315316028|gb|EFU64061.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 167

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 24/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N + L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPMGFPIDDRKMKRA--GLDYWDKLEIHFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132
            NL + ++                  V    + A  +     + + ++   +FGRE  GL
Sbjct: 62  DNLADFMS-------------QMKGQVYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGL 108

Query: 133 TNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             E+    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 109 P-EDFMREHPETALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1]
 gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3]
          Length = 218

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 19  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 74  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 177


>gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 267

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 27/176 (15%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   AP         V++L       N+G + R+   F    L +V P    P E    +
Sbjct: 113 MADGAPSAL------VLVLDQVTDPHNVGAILRSAAAFGA--LAVVAPDRHTPDETGTLA 164

Query: 61  --SANADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
             ++ A     ++    V   L++      +     A               A       
Sbjct: 165 KSASGALERMPLVRVTNVVRTLEDLKKAGFWTAGLAA--------------DAPKTLAEA 210

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                V ++ G E  G+        + ++  P+     SLN+S A  + ++E    
Sbjct: 211 NLSGKVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALYEMRRG 266


>gi|241668442|ref|ZP_04756020.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 252

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   NIG + R      LT++ L+N      + KA  +   A   +   R F 
Sbjct: 106 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLINGTVDPFNPKAIRAGMGAQFSLKF-RYFE 164

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  A+ +   +           K  L      +    + F   N  ++FG E  G+ + 
Sbjct: 165 NL-SAVRNYPTL--------KERKIWLTTPHEGVSCYSKEFKLSNSVLVFGEEANGIEDF 215

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +         P      SLN++QA  + ++E +   ++ 
Sbjct: 216 SVG---EKTMIPTLSNIESLNVAQAATIYLFEGLRQKMLK 252


>gi|224537157|ref|ZP_03677696.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521212|gb|EEF90317.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 175

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 11/167 (6%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P V++L + +   NIG V R    F +  + L       P  +   ++  A
Sbjct: 15  EEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGA 74

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123
           +  +D  +   N  EA+ +L        +        +   E +I+L+E  +   +   +
Sbjct: 75  EFTVDW-KYVDNCVEAVDNL--------KKEGYTVYSVEQAEGSIMLDELSLDRTKKYAV 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 126 VMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172


>gi|85060160|ref|YP_455862.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|84780680|dbj|BAE75457.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 155

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 35/175 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N     L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFH-LHIIQPLGFTWDDKRLRRAG-----LDYHE---- 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSV----------LAPKEAAIVLNERIFSGQNVGIIFG 126
                      +A    +R+    +          L  K        R  +G    ++FG
Sbjct: 54  -----------FAAIRHHRDYAAFLAQAQQARLFALTTKGQPAHSAVRYQAGDY--LLFG 100

Query: 127 RERWGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            E  GL    +        I  P+ P   S+N+S AV ++V+E       +S ++
Sbjct: 101 PETRGLPPSILDALPMTQKIRIPMQPDSRSMNLSNAVSVVVYEAWRQLDYASARD 155


>gi|256421016|ref|YP_003121669.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035924|gb|ACU59468.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 197

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 18/199 (9%)

Query: 1   MTPYAPQ-----LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP   +     L     G  ++L +     NI  V R      +  + ++N        
Sbjct: 1   MTPERRERLLSVLNKRQAGLTVVLENVFDPHNISAVLRTCDAVGIQDVYVLNTTTARRKR 60

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
               SS++A   +   +         A    +     R + +          A  L E  
Sbjct: 61  WGHKSSSSAAKWLTVHQFSDT-----ATCMAVV----REKYDKIYTTHLAADAKSLYELD 111

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           F+G +V ++FG E+ G++ E   L +     P   +  SLNIS A  + ++E M    ++
Sbjct: 112 FTG-SVALVFGNEQEGVSEEIRKLCDGNFIIPQVGIIKSLNISVACAVSIYEAMRQKSIA 170

Query: 176 S---EKNVKEQNTPATKGE 191
               +KN+ +    A   E
Sbjct: 171 GHYEQKNLPDAQYNALLEE 189


>gi|212711590|ref|ZP_03319718.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
           30120]
 gi|212685692|gb|EEB45220.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
           30120]
          Length = 226

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 77/175 (44%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82
             N+  + R+     +  +  V     WP +  + S ++A      V+V    + + AI+
Sbjct: 19  PHNVSAIVRSADAVGIHNIHAV-----WPDQHVKLSVSSAAGSNSWVKVIPHQSTENAIS 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +        +++     V    ++A+   E I   Q   I+ G+E+ G++++ +AL++ 
Sbjct: 74  QI--------KSQGMQILVTNLSDSAVDFRE-IDYTQPTCIMVGQEKTGISDKALALADQ 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E      ++   + +E +  + + +     +
Sbjct: 125 HIIIPMVGMVQSLNVSVASALILYEAQRQRQLAGMYD-RENSLLSEQEQQEWLFE 178


>gi|296168816|ref|ZP_06850498.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896519|gb|EFG76166.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 154

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK-- 78
            P++  N G   R        +L LV P     SE     +      + SV V  +L+  
Sbjct: 8   SPRIPPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPQLRRAGLDYHDLASVTVHPSLQAA 66

Query: 79  -EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            EA+A    ++A TA++   F  V                     ++FG E  GL    +
Sbjct: 67  WEALAP-ARVFAFTAQSTTAFADVRYR--------------PGDVLLFGPEPTGLDAATL 111

Query: 138 ALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           A ++    +  P+     SLN+S A  + V+E       S  
Sbjct: 112 ADAHITERVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGYSGA 153


>gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 234

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           IIL   +   N+G + R+  +F    + +   R    +     +SA A   I++++V   
Sbjct: 87  IILDQIEDPHNLGAIIRSAESFGFDGVVIPERRSASVTSTVYKTSAGA---INNIKVYRV 143

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            NL  +I DL     +IY                   A    ++      VG++ G E  
Sbjct: 144 KNLTRSIKDLKDKGFWIYGLAG--------------EADSSIDKADLTGKVGLVVGNEGS 189

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G++       + +++ P+     SLN S A  + ++E +  
Sbjct: 190 GISRLVRDNCDMLVNIPMLGRVNSLNASVAAGISMYELLRQ 230


>gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           155-74]
          Length = 206

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 7   PHNVSAIIRTADAVGVHEVHAV-----WPGNRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 62  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 112

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 113 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 165


>gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
           DSM 17374]
 gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
           DSM 17374]
          Length = 258

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 16/174 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA 64
            L+      V++L       N+G + R+   F +  L +V P  R    +E     S+ A
Sbjct: 94  SLEEGKDSLVMVLDGITDPHNLGAILRSADQFGV-DLVVV-PERRSAQANETVARVSSGA 151

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              + +  V +              +T     +    +   +     +E I       I+
Sbjct: 152 SQYVPTAVVTN------------ITSTLTMMKDHGFWIYGADMNGESSETIEFTGRCIIV 199

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            G E  G++       + I+S P+     SLN+S A  ++++E          +
Sbjct: 200 MGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGILMYEARRQRRALPGE 253


>gi|145628348|ref|ZP_01784149.1| rRNA methylase [Haemophilus influenzae 22.1-21]
 gi|144980123|gb|EDJ89782.1| rRNA methylase [Haemophilus influenzae 22.1-21]
          Length = 160

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 58/170 (34%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +         + + +  F   L  K        +   G    ++FG E  G+  
Sbjct: 61  KTFEAFLE--------SEKPKRLF--ALTTKGCPAHSQVKFKLGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 248

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 12/164 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG ++IL      +N+G + R    F ++ + +   R    +E    +S  A   +   +
Sbjct: 94  KGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVIKASTGAVFHLPIAK 153

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +L+  I                    +   E        I     + ++ G E  G+
Sbjct: 154 V-GSLRNVIEKFKKKGG-----------WVVAVEKGGRNIAEIDFPYPIALVVGSEGKGV 201

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   +  ++ I + P+     SLN+S A  + +WE  +  I   
Sbjct: 202 SKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKRRIKDG 245


>gi|309799791|ref|ZP_07694002.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis
           SK1302]
 gi|308116585|gb|EFO54050.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis
           SK1302]
          Length = 167

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLEIHFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +  +                +++     +  +    +  +   +FGRE  GL  
Sbjct: 62  DSLADFMEKMD-----------GQLYLISKFAEKVYSDADFTTEGDHYFLFGREDKGLP- 109

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           EE    +    +  P+N     SLN+S  V ++V+E +   
Sbjct: 110 EEFMREHPEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|77456565|ref|YP_346070.1| RNA methyltransferase TrmH, group 2 [Pseudomonas fluorescens Pf0-1]
 gi|77380568|gb|ABA72081.1| putative RNA-methyl transferase [Pseudomonas fluorescens Pf0-1]
          Length = 151

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 53/162 (32%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFEMDDKRLRRA--GLDYHEYATLQRH 60

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L   +  L        TT  +R    +   P +                 IFG E  G
Sbjct: 61  ADLASCLESLGHPRLFAFTTKGSRPFHDAAFVPGD---------------AFIFGPESRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E +        +  P+     SLN+S  V + V+E    
Sbjct: 106 LPPEVLDALPGEQRLRLPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|113461765|ref|YP_719834.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|112823808|gb|ABI25897.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
          Length = 161

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +  ++  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAQIKK 59

Query: 74  FSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                E +     + ++A T   +          E    L            +FG E  G
Sbjct: 60  HKTFNEFLNTEQPNRLFALT--TKGTPAHSQVNFELGDYL------------MFGPETRG 105

Query: 132 LTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +        I  P+     S+N+S AV + V+E    
Sbjct: 106 IPMSILDNLPTTQKIRIPMIENSRSMNLSNAVAVTVYEAWRQ 147


>gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7424]
 gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7424]
          Length = 310

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R         L +   R    +      +A A   +   RV  NL  A+  L
Sbjct: 154 PHNLGAMIRTTEAMGAQGLVIPQRRAAGITSTVMKVAAGALEHLPVARVV-NLSRALEQL 212

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                        F       ++  +L+   F G  VG++ G E  GL+       +A++
Sbjct: 213 ---------KEAGFWLYGTMADSGKLLHTIDFKGA-VGLVVGSEGEGLSLLTQKSCDALV 262

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           S P+    PSLN S A  + ++E         
Sbjct: 263 SIPLAGKTPSLNASVATAIALYEVFRQRQSDK 294


>gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
           DSM 18011]
 gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
           DSM 18011]
          Length = 249

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 28/181 (15%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKA 57
           P L    K P  ++      V      N G +AR      +  + +  P  G    +  A
Sbjct: 88  PFLYEQGKNPFFVMLDGVTDVR-----NFGAIARTCECGGVDAVVI--PMKGSVSVNADA 140

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIF 116
             +SA A   +   R     ++++        TT +  +++   +LA  E       +  
Sbjct: 141 VKTSAGALHTLPVCR-----EQSLN-------TTIKYLKDSGFRILAATEKGDYNYTQGD 188

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + +I G E  G++ E ++L +  ++ P+     SLN+S A  ++++E ++      
Sbjct: 189 YTGPICLIMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIYEAVKQRTPDK 248

Query: 177 E 177
           E
Sbjct: 249 E 249


>gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
 gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
          Length = 347

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            +N+G + R         L +   R    +   R  +A A       RV  NL  A+  L
Sbjct: 193 PQNLGAIIRTAEALGAQGLVIPQRRAVGVTSTVRKVAAGALETFPIARVV-NLSNALEQL 251

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +IY T A                  L  ++    +V ++ G E  GL+    +  
Sbjct: 252 KTAGFWIYGTAAGTGK--------------LLHKVDLTGSVVLVIGSEGNGLSLRSQSCC 297

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + +IS P+    PSLN S A  ++++E        
Sbjct: 298 DMLISIPLQGKTPSLNASAATAMVLYETYRQRWSD 332


>gi|237806923|ref|YP_002891363.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM
           9187]
 gi|237499184|gb|ACQ91777.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM
           9187]
          Length = 154

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N     L L+ P      +K    +       +   +   
Sbjct: 4   IALYEPEIPPNTGNIIRLCANTGYF-LHLIEPMGFAWDDKRLRRA--GLDYHEFAEIKRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F N    I +      TT            P EA  +  +         ++FG E  G
Sbjct: 61  ANFENFLSTIGNARIFACTTKGKA-------YPSEAGFIAGD--------VLLFGPETRG 105

Query: 132 LT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L     E +  +  +   P+ P   S+N+S AV + V+E    
Sbjct: 106 LPMSIIESLPEAQRL-RIPMLPQSRSMNLSNAVSVFVYESWRQ 147


>gi|325102944|ref|YP_004272598.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
 gi|324971792|gb|ADY50776.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
          Length = 176

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 13/171 (7%)

Query: 3   PYAPQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P   + +N  K P++++   V      N+G   R    F +  L L       P  +   
Sbjct: 12  PSVEEFKNQDKLPIVVVLDNVRSLH--NVGSAFRTADGFAVDALYLCGITAQPPHREIEK 69

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           ++  A   ID  + F+N+ +A+ADL         N     ++   + +  +L+      Q
Sbjct: 70  TALGATQSIDW-QYFANVADAVADLK-------ENGYQIIAIEQAENSISLLDFEPKKDQ 121

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              + FG E  G++ E +   +  I  P      S NI  +  +++W+   
Sbjct: 122 KFALFFGNEVNGVSEEVMKQIDTCIEIPQFGTKHSFNIVISTGIVLWDFFS 172


>gi|291294429|ref|YP_003505827.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
 gi|290469388|gb|ADD26807.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
          Length = 160

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 22/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P++ +N G +AR        +L L+ P  G+    A+   A  D   +   V  +
Sbjct: 4   VVLYQPEIPQNAGNIARTCAATG-AELHLIRPL-GFQWNSAKLRRAGLDYWPEVDYVLHD 61

Query: 77  ----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 E +     I+A +++    +  V                G    ++FG E  GL
Sbjct: 62  SWRAFLETLPPDGRIWAFSSKVSRLYTEVRY------------QPGDY--LLFGPESRGL 107

Query: 133 TNEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMEN 171
            +E +      ++ P+      SLN++ AV + ++E +  
Sbjct: 108 PSEVLERFPG-VTIPMPGRGGRSLNLAVAVGVGLYEALRQ 146


>gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413]
 gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413]
          Length = 260

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 21/171 (12%)

Query: 7   QLQNSAKGPVIIL-VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +LQ+      ++L ++  Q   N+G + R       + L L        + K   +SA  
Sbjct: 101 ELQSQIPFTGVVLALETIQDPGNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQ 160

Query: 65  DCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              + +  V  +LK  +         + AT    +  +                I   + 
Sbjct: 161 WFRLATA-VSEDLKATVQLCQQAGMQVVATLPTAKLTYW--------------EIDWHKP 205

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             I+ G E  GL+ +  A+++  +  P++P   SLN++    LM++E    
Sbjct: 206 SLILLGNEGAGLSPDLAAMADQEVKIPLSPGVESLNVAITSALMLYEVQRQ 256


>gi|260911205|ref|ZP_05917808.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634685|gb|EEX52772.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 267

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 11/143 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R+     +  + L        + +A   S  A  ++         ++ +A+L  
Sbjct: 133 NIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGAVFLVPWTWA----EQPLAELST 188

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           I   TA       S+        + + R+ +   + I+ G E  GL +E IA ++ ++  
Sbjct: 189 IGFRTAAMALTHNSI-------PLNDARLKAEPRLAIVMGTEGDGLPSEVIAQADYVVRI 241

Query: 147 PVNPLFPSLNISQAVLLMVWECM 169
           P+     SLN++ A  +  WE  
Sbjct: 242 PMAHGVDSLNVAAASAVAFWELR 264


>gi|29654808|ref|NP_820500.1| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|153208685|ref|ZP_01946932.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830683|ref|YP_001597358.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|165919332|ref|ZP_02219418.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           334]
 gi|212219235|ref|YP_002306022.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|29542076|gb|AAO91014.1| 23S rRNA methyltransferase [Coxiella burnetii RSA 493]
 gi|120575796|gb|EAX32420.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762550|gb|ABX78192.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           331]
 gi|165916992|gb|EDR35596.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           334]
 gi|212013497|gb|ACJ20877.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 152

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N   + L L++P      EK    +       +   +   
Sbjct: 4   IALFEPEIPPNTGNIIRLCANAGAS-LHLIHPLGFSLDEKRLQRA--GLDYREWATIIHY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F   K A A+ H I+A T + +  +  V                  +   +FG E  G
Sbjct: 61  DHFEAFKSAFAE-HRIFACTTKGKTIYADVHYR--------------SSDVFLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E       +  I  P+     S+N++  V ++++E    
Sbjct: 106 LPAEIRTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147


>gi|323485379|ref|ZP_08090727.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
           WAL-14163]
 gi|323694141|ref|ZP_08108320.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323401242|gb|EGA93592.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
           WAL-14163]
 gi|323501858|gb|EGB17741.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 163

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 17  IILVDPQLGENIGMVARAM---WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--V 71
           I+L +P++  N G + R+          +L L+ P     S++    +           V
Sbjct: 3   IVLYEPEMPMNTGNIGRSCVATKT----KLHLIEPLGFRLSDREIKRA--GLDYWPHLDV 56

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V+S+ ++ +            +RN    +      A  +   +    +  I+FG E  G
Sbjct: 57  TVYSDYRDFL------------DRNPGAKIYMATTKAPNVYSDVKYEPDCYIMFGPESRG 104

Query: 132 LTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +  +    +  P+     SLN+S +V ++++E +  
Sbjct: 105 IPEEILVENQETCVRIPMWGETRSLNLSNSVAVILYEALRQ 145


>gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM
           15829]
          Length = 367

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 11/151 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N G + R+      + + + N R       A  +SA A   +  V+V  NL  AI +L
Sbjct: 227 EGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPIVQVV-NLARAIDEL 285

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                      + F  V+   E A            V +I G E  G+++      + I 
Sbjct: 286 ---------KEHGFW-VIGASEHAQQTVWDAPFTGKVCLIMGSEENGISSLVQKKCDFIC 335

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             P      SLN++QA  +M +E M  + +S
Sbjct: 336 KLPQRGRIESLNVAQAATVMCYEWMRQNKLS 366


>gi|288800355|ref|ZP_06405813.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332568|gb|EFC71048.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 176

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 72/168 (42%), Gaps = 11/168 (6%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P V++L + +   N+G V R+   F +  + L       PS +   ++  A
Sbjct: 15  EEFKAARKLPLVVVLDNVRSLHNVGSVFRSCDAFRIEAVYLCGITATPPSAEIHKTALGA 74

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123
           +  +   + + +  +A+ +L        + ++ F   +   E +  + +  +   +   +
Sbjct: 75  EDSVSW-KYYKSTLDAVEEL--------KQQDYFVYSIEQVEGSQNMAKINLDHSKRYAV 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + G E  G+  E +  S++ +  P      SLN+S    ++VWE  + 
Sbjct: 126 VLGNEVKGVQQEVVNASDSCLEIPQLGTKHSLNVSVTAGIVVWEFAKQ 173


>gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 372

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 11/151 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N G + R+      + + + N R       A  +SA A   +  V+V  NL  AI +L
Sbjct: 232 EGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPIVQVV-NLARAIDEL 290

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                      + F  V+   E A            V +I G E  G+++      + I 
Sbjct: 291 ---------KEHGFW-VIGASEHAQQTVWDAPFTGKVCLIMGSEENGISSLVQKKCDFIC 340

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             P      SLN++QA  +M +E M  + +S
Sbjct: 341 KLPQRGRIESLNVAQAATVMCYEWMRQNKLS 371


>gi|197251230|ref|YP_002148627.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214933|gb|ACH52330.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 157

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+   H   A  A         L  K            G    ++FG E  GL    
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLPASI 110

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+ P   S+N+S +V ++V+E    
Sbjct: 111 LDALPKEQKIRIPMMPDSRSMNLSNSVSVVVYEAWRQ 147


>gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. Sakai]
 gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           301]
 gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046]
 gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227]
 gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. W3110]
 gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str.
           8401]
 gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11]
 gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1]
 gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str.
           REL606]
 gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933]
 gi|147866|gb|AAB00161.1| spoU [Escherichia coli]
 gi|290501|gb|AAA62004.1| spoU [Escherichia coli]
 gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301]
 gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T]
 gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046]
 gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227]
 gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401]
 gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli]
 gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli]
 gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli]
 gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli]
 gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli]
 gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1]
 gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017]
 gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC
           796-83]
 gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B]
 gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. G5101]
 gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. 493-89]
 gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. H 2687]
 gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14]
 gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G]
 gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68]
 gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180]
 gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253]
 gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii
           ECD227]
 gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1044]
 gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88]
 gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           2747-71]
 gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6]
 gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272]
 gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304]
          Length = 229

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|160888065|ref|ZP_02069068.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
 gi|156862376|gb|EDO55807.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
          Length = 175

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNV 121
            A+  +D  +   N  EA+ +L        ++       +   E +++L+E  +   +  
Sbjct: 73  GAEFTVDW-KYVDNSVEAVDNL--------KSEGYIVYSVEQAEGSVMLDELVLNKTKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172


>gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 273

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 13/169 (7%)

Query: 3   PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P  P ++   +G   V+++       NIG + R+     +  + L        + +A   
Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  +  ++        L ++IA L  +   TA      +SV  P +   +  E       
Sbjct: 167 SMGSVFLVPWTW----LDDSIASLSRLGFRTAAMALTDRSV--PLDDPALAAE-----PR 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           + I+ G E  GL  E I  ++ ++  P+     SLN++ A  +  W+  
Sbjct: 216 LAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264


>gi|319900584|ref|YP_004160312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319415615|gb|ADV42726.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 180

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P V++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 17  SVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 76

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-V 121
            A+  +D  +   N  EA+ +L        +        +   E +I+L+E     +   
Sbjct: 77  GAEFTVDW-KYVENSVEAVDNL--------KKEGYVVYSVEQAEGSIMLDELALDKEKKY 127

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 128 AVVMGNEVKGVRQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 176


>gi|163786061|ref|ZP_02180509.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales
           bacterium ALC-1]
 gi|159877921|gb|EDP71977.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales
           bacterium ALC-1]
          Length = 151

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L++P++  N G + R       ++L LV P     ++K    +         + V  +
Sbjct: 5   IVLIEPEIPNNTGNIGRLALATG-SRLHLVKPFGFEINDKRLKRA--GLDYWQHLEVIYY 61

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +++ +      D   ++ ++                  V +  I   +N+ ++FG+E  G
Sbjct: 62  NSIDDFFLKNKDSIMVFLSS---------------QGKVSHWDINYTENMFLVFGKESVG 106

Query: 132 LTNEEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           L    I    + +   P+ +    SLN++ AV ++V+E +  
Sbjct: 107 LPKPLIEKHKDQLFKIPLYSKDIRSLNLANAVSIIVYEGLRQ 148


>gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 270

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 20/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           LQ   KG ++IL   Q+  NIG V R+        + +   R      K   +S  +   
Sbjct: 116 LQPRQKGTLLILDGLQIPGNIGTVIRSADGAGAHGIIITQSRQRLTHPKLVRASMGSLFA 175

Query: 68  IDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +    V S+++ A A L      +  T+ R R +F+              +        I
Sbjct: 176 LP--IVESDVETAYAWLKRYGYQVVTTSPRARVSFR--------------QARYSTRTAI 219

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G ER G++ +  A  +  +S P++    SLN+  A +LM++E +   
Sbjct: 220 VMGNEREGVSEDWFARHDLSVSIPMHGRADSLNVGNAAVLMLYEVLHQQ 268


>gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
 gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
          Length = 175

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 11/166 (6%)

Query: 7   QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P+I+ L D +   NIG V R    F + ++ L       P+++   ++  A 
Sbjct: 16  EFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGII 124
             +       ++ E +  L        +  N     +   E AI+L++ +  +     +I
Sbjct: 76  ETVTW-EYAKDVLEVVHQL--------KQENVKVYSVEQTENAIMLDDFQPETNTKYALI 126

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           FG E  G++ E I LS+ +I  P      SLNIS +  +++W+  +
Sbjct: 127 FGNEVKGVSQEAINLSDGVIEIPQLGSKHSLNISVSAGIVIWDLFQ 172


>gi|146329702|ref|YP_001209617.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146233172|gb|ABQ14150.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 159

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 36/179 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADC 66
           + L  PQ+  N G + R   N  + +L +++P      +K    +           + + 
Sbjct: 3   VALFHPQIPPNTGNIIRLCANTGV-KLHIIHPTGFVWDDKRLRRAGLDYAEFAEITHHEN 61

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             D  R F           +   TT   R  + +  +P +                ++FG
Sbjct: 62  WSDFARYFPK-----ESCIWAL-TTRGKRCVYDAAFSPNDV---------------LLFG 100

Query: 127 RERWGLTNE---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            E  GLT E   EIA  + +   P+     SLN+S +V ++++E +  + +  +  + +
Sbjct: 101 SETSGLTEEVHAEIAPEHKL-RLPMQACSRSLNLSNSVAIVLYEALRQTGLPPDPQLAQ 158


>gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 309

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 7/172 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L + +   N G V R         + L +      + KA  +S  + 
Sbjct: 137 EEILAARPKLVAVLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 196

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        ++EA+  L       A  R          +    L ++   G     +F
Sbjct: 197 FHLPVAVGVP-VEEAVEGLRR-----AGVRILAADGAGTDDLDAEL-DKGTMGGPTAWVF 249

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E WGL  E  AL++A++  P++    SLN++ A  + ++        S  
Sbjct: 250 GNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRASGG 301


>gi|148239457|ref|YP_001224844.1| rRNA methylase [Synechococcus sp. WH 7803]
 gi|147847996|emb|CAK23547.1| Predicted rRNA methylase [Synechococcus sp. WH 7803]
          Length = 165

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 34/180 (18%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MT   P          + L +P++  N G +AR    F+L  L L+ P  G+  +  +  
Sbjct: 1   MTHLKPS------PLRVALFEPRIPPNTGNIARTCAAFDLP-LSLIEPL-GFSIDDRQLK 52

Query: 61  SANADCVID-SVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            A  D     ++ V +N +    ++A    +   + R+              + L    F
Sbjct: 53  RAGLDYWPHVNLSVHTNFQAFKNSLAKPFRVIGCSRRD-------------GVALQGFCF 99

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVWEC 168
              +V ++FGRE  GL        + I++ P+             SLN+S A  +  ++ 
Sbjct: 100 EPGDV-LLFGREDTGLPQPVRDQCDQILTIPMPCSADSDGQGGVRSLNLSVACAIACFQA 158


>gi|303284060|ref|XP_003061321.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457672|gb|EEH54971.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 150

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           ++LV PQ+  N G +AR       ++  L LV P      +     +         VRV 
Sbjct: 1   VVLVSPQIPGNTGTIARTCAA---SRVPLHLVGPLGFTLEDSQLKRA--GLDYCVCVRVH 55

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +     A          R        L  K  A    E         ++FG E  GL +
Sbjct: 56  DDWDAFYAYWSVDLGAPGR--------LVAKFGARPHAEEGAYLPGDWLLFGAETTGLPD 107

Query: 135 EEIALSNA---IISFPVNPLF-PSLNISQAVLLMVWECMEN 171
           E          I   P++     SLN++ +  + V+E +  
Sbjct: 108 EAHDACARSGGIRRIPIDEDHVRSLNLAVSAGVGVYEAIRQ 148


>gi|254447561|ref|ZP_05061027.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           HTCC5015]
 gi|198262904|gb|EDY87183.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           HTCC5015]
          Length = 159

 Score = 68.9 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 26/166 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P++  N G + R   N    QL L++P      +K    +        SVR   +
Sbjct: 4   IALYQPEIPPNTGNIIRLCANTGF-QLHLIHPLGFELDDKRLRRAGLDYHEFASVREHES 62

Query: 77  LKEAIADL-------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +    D        H ++A + R R  +  V              F   +V  +FG E 
Sbjct: 63  WEAFCRDFVQGGDANHRLFALSTRGRQRYSDV-------------AFREGDV-FLFGPET 108

Query: 130 WGLTNE---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL  +   ++  +  +   P+     SLN+S  V ++ +E     
Sbjct: 109 RGLPQDILDDLPEAQRL-RLPMRASGRSLNLSNTVAVLGYEAWRQQ 153


>gi|227488138|ref|ZP_03918454.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092000|gb|EEI27312.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 436

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 49/212 (23%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKAR 58
            A  + N     V + V+     N G + R           L     V+P+ G   + AR
Sbjct: 203 SARDVLNGRPKLVSVPVETNEPGNAGTLIRVADAMG-ADCVLFAGDTVDPQSG---KAAR 258

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           SS+ +   +                        AR RN  K V   +E  + +      G
Sbjct: 259 SSAGSLFHIP----------------------VARERNIMKVVSMLRERGLAIAATAADG 296

Query: 119 ------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                       Q    +FG E  GL  E  A ++  +  P+     SLN++ A  + ++
Sbjct: 297 EVDLTDAEDLLSQPTAWLFGNEAHGLPEEVQAQADYRVRIPIRGRAESLNLATAASICLF 356

Query: 167 EC----MENSIVSSEKNVKEQNTP--ATKGEL 192
           E      + +  +    + E++ P  A   EL
Sbjct: 357 ESSKYQAKAAESARSGQISEEDVPEAAEFDEL 388


>gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549]
 gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1]
          Length = 250

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150

Query: 62  ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +    + +NL E   IA L              K  L      +    + F   
Sbjct: 151 MGAQFSLKFSYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLA 198

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           N  ++FG E  G+ +  +         P      SLN++QA  + ++E +   +
Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|54114343|gb|AAV29805.1| NT02FT1078 [synthetic construct]
          Length = 155

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 24/158 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
             I L +P++  N G + R   N    +L L+ P      +K    +       +    +
Sbjct: 2   ISIALYEPEIPPNTGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLK 58

Query: 73  VFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ N  E      D      TT   +   K   +                +  ++FG E 
Sbjct: 59  IYKNFAEFYQQNKDKQIWACTTKAKQYYHKVDFS---------------CDDILLFGPET 103

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
            GL  + + L     +  P++    SLN+S +V ++++
Sbjct: 104 RGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141


>gi|56707605|ref|YP_169501.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670076|ref|YP_666633.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456676|ref|ZP_03665149.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370123|ref|ZP_04986129.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874426|ref|ZP_05247136.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604097|emb|CAG45096.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320409|emb|CAL08479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568367|gb|EDN34021.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840425|gb|EET18861.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158763|gb|ADA78154.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 155

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 24/158 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
             I L +P++  N G + R   N    +L L+ P      +K    +       +    +
Sbjct: 2   ISIALYEPEIPPNTGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLK 58

Query: 73  VFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ N  E      D      TT   +   K   +                +  ++FG E 
Sbjct: 59  IYKNFAEFYQQNKDKQIWACTTKAKQYYHKVDFS---------------CDDILLFGPET 103

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
            GL  + + L     +  P++    SLN+S +V ++++
Sbjct: 104 RGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141


>gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 184

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 19/171 (11%)

Query: 4   YAPQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
                + + K PV+IL   V  Q   N+G V R    F + ++ L        + +   +
Sbjct: 16  STEAFKKAPKLPVVILLDHVRSQN--NVGSVFRTSDAFRIEKIFLCGITSTPENREVHKT 73

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFS 117
           +  A+  +D      +  EA+           R +     + A ++A    +     +  
Sbjct: 74  ALGAEDAVDW-EYVKDTTEAVD----------RLKKEGYRIFAIEQAENTTSLENFSLSP 122

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GQ   +IFG E  G+  E I LS+  I  P      S NIS  V +++W+ 
Sbjct: 123 GQKYALIFGNEVKGVQQEVIDLSDGCIEIPQFGTKHSFNISVTVGIVLWQI 173


>gi|253569078|ref|ZP_04846488.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|251841097|gb|EES69178.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
          Length = 175

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A + + + K P V++L D +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
            A+  +D  +  +N  +A+ +L        R        +   E +I+L++  +   +  
Sbjct: 73  GAEFTVDW-KYVNNAVDAVDNL--------RKEGYIVYSIEQAEGSIMLDQLELDKTKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172


>gi|118497153|ref|YP_898203.1| RNA methyltransferase [Francisella tularensis subsp. novicida U112]
 gi|134302459|ref|YP_001122429.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|194323451|ref|ZP_03057228.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|254373981|ref|ZP_04989463.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548]
 gi|118423059|gb|ABK89449.1| RNA methyltransferase, SpoU family [Francisella novicida U112]
 gi|134050236|gb|ABO47307.1| RNA methyltransferase, TrmH family, group 2 [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151571701|gb|EDN37355.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548]
 gi|194322306|gb|EDX19787.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|328676622|gb|AEB27492.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida
           Fx1]
          Length = 155

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 24/158 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
             I L +P++  N G + R   N    +L L+ P      +K    +       +    +
Sbjct: 2   ISIALYEPEIPPNTGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLK 58

Query: 73  VFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ N  E      D   I+A T + +  +  V    +                ++FG E 
Sbjct: 59  IYKNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------ILLFGPET 103

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
            GL  + + L     +  P++    SLN+S +V ++++
Sbjct: 104 RGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141


>gi|111023734|ref|YP_706706.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110823264|gb|ABG98548.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 283

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 6/171 (3%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           TP    L+  +   +++   P    N+G + R+   F    + +V         ++  +S
Sbjct: 118 TPRLKDLRLQSVPLIVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRAS 177

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   +  V   S++ E +A          R       ++   E   V  +    G   
Sbjct: 178 TGSLFAMP-VVTVSSVDEILAFRD-----ARRASGTDLHIVGTDETGSVTIDAHDFGGGT 231

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  G++       + +++ P+     SL    A  + ++E     
Sbjct: 232 VLVIGNETRGMSAAWRDGCDTVVNIPIGGAASSLGAPSAGAVALYEIARQR 282


>gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 230

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 84/207 (40%), Gaps = 31/207 (14%)

Query: 1   MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++ N  +  + I ++      N+  V R      + Q+        WP+ 
Sbjct: 1   MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHQVH-----AIWPTS 55

Query: 56  KARSS--SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAI 109
           + ++   SA        V+    +++A+  L      + AT     N  +  +  +E   
Sbjct: 56  RMKTLVSSAAGSNSWVQVKTHRTIRDAVGHLKAEGMQVLAT-----NLSEHAVDFRE--- 107

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                I   +   I+ G+E+ G+T+E + L++  I  P+  +  SLN+S A  L+++E  
Sbjct: 108 -----IDYTRPTCILLGQEKTGITDEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196
               ++     + +++P  + E    L
Sbjct: 163 RQRQIAGMY--RREDSPLDEEEQQRLL 187


>gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ +++A        V+   N+ +A+ 
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGNRMRTMASSAAGSNSWVEVKTHRNISDAVN 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L       AR      + L+  + A+   E I   +   I+ G+E+ G+T E ++L++ 
Sbjct: 85  HLK------ARGMQILATHLS--DKAVDFRE-IDYTRPTCILMGQEKTGITEEALSLADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +          P  + + L F
Sbjct: 136 DIIIPMTGMVQSLNVSVASALILYEAQRQRQNAGMYQRANSTLPEKEQQRLLF 188


>gi|89076382|ref|ZP_01162715.1| putative rRNA methylase, SpoU family protein [Photobacterium sp.
           SKA34]
 gi|89047953|gb|EAR53544.1| putative rRNA methylase, SpoU family protein [Photobacterium sp.
           SKA34]
          Length = 154

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                +A+        TT             K      N +   G    ++FG E  GL 
Sbjct: 63  FTAFMQAMEGRRIFACTT-------------KTTNFHTNAKFEQGD--VLLFGPETRGLP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E IA       +  P+ P   SLN+S AV ++ +E    
Sbjct: 108 AEFIASQPLEQRLRIPMQPDSRSLNLSNAVAIIAFEAWRQ 147


>gi|154520210|gb|ABS82777.1| RNA methyltransferase [uncultured Methylophaga sp.]
          Length = 154

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N    QL L+ P      +K    +         V+V ++
Sbjct: 4   IALYEPEIPPNTGNIIRLCANTG-AQLHLIEPLAFVLDDKRLRRAGLDYHEFAPVKVHAD 62

Query: 77  LKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              A         ++A T + +            A  ++E I       ++FG E  GL 
Sbjct: 63  FA-AFQQWQQNRPLFACTTKAKQFHH-------QATFIDESI-------LLFGPESRGLP 107

Query: 134 NEEIA-LSNAI-ISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +  L +   I  P+ P   SLN+S A  ++++E    
Sbjct: 108 ATLLDNLPDRQKIRIPMYPESRSLNLSNATAIILYEAWRQ 147


>gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197]
 gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
 gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197]
 gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
          Length = 229

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITEEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQHQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
 gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
          Length = 229

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGNRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|285019836|ref|YP_003377547.1| tRNA/rrna methyltransferase , spou class protein [Xanthomonas
           albilineans GPE PC73]
 gi|283475054|emb|CBA17553.1| putative trna/rrna methyltransferase , spou class protein
           [Xanthomonas albilineans]
          Length = 159

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 25/169 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           ++L  P++  N G V R   N    QL L+ P     S++    +       +  +  V 
Sbjct: 9   VLLFQPEIPPNTGNVIRLCANTG-AQLHLIEPLGFDLSDRQLKRA--GLDYHEYAQLQVH 65

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L  A+  L    ++A + R                   +          +FG E  GL
Sbjct: 66  ASLDAALQTLAPQRLFALSTR--------------GCARYDAAAFADGDAFLFGPETRGL 111

Query: 133 TNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             E +     +  +   P+ P   SLN+S AV ++V+E       +  +
Sbjct: 112 PPEVLEAIPPAQRL-RLPMRPDNRSLNLSNAVAVVVFEAWRQLGFAGAE 159


>gi|124268369|ref|YP_001022373.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124261144|gb|ABM96138.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 161

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 62/173 (35%), Gaps = 25/173 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV+P++  N G V R   N   T L LV P      +K    +       +    R  
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMEDKLLQRA--GLDYHEHAAVRRH 60

Query: 75  SNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++ +  +     D   ++A T R       V  P +A   L            +FG E  
Sbjct: 61  ASWEALLVAEQPDPQRLFAFTTRGSRPLTEV--PWQAGDWL------------VFGCETR 106

Query: 131 GL--TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           GL  T  +   +   +  P+     SLN+S AV + V+E       +      
Sbjct: 107 GLDPTLRDRFPAAQRVRLPMRAGQRSLNLSNAVAVAVFEAWRQQDFAGASGAP 159


>gi|90580897|ref|ZP_01236699.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14]
 gi|90437968|gb|EAS63157.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14]
          Length = 154

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKD 62

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                +A+        TT             K      N +   G    ++FG E  GL 
Sbjct: 63  FAAFMQAMEGRRIFACTT-------------KTTNFHTNAKFEQGD--VLLFGPETRGLP 107

Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E IA       +  P+ P   SLN+S AV ++ +E    
Sbjct: 108 AEFIASLPLEQRLRIPMQPDSRSLNLSNAVAIISFEAWRQ 147


>gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265]
 gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeovibrioides DSM 265]
          Length = 249

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 17/171 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +  +    +++L       NIG + R         + LV  +    +     +SA A  
Sbjct: 93  SVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLVEGKGAPVNAVVHKASAGALS 152

Query: 67  VIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   +V     +L+   A+   + AT                 A              I
Sbjct: 153 HMRVAKVKSLVRSLEFLHANGIRVIAT--------------DMEAETNYTDADFRLPTAI 198

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + G E  GL  E +   +  +  P+     SLN+S    ++++E M   ++
Sbjct: 199 VLGAEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLYEVMRQRLL 249


>gi|329963702|ref|ZP_08301148.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328527712|gb|EGF54704.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 216

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P VI+L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 53  SVEEFKEARKLPLVIVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 112

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            A+  +D  +  +N  EA+ +L        +        +   E +I+L+E      +  
Sbjct: 113 GAEFTVDW-KYVNNSVEAVDNL--------KKEGYVVYSVEQAEGSIMLDELTLDKTKKY 163

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 164 AIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 212


>gi|313887355|ref|ZP_07821046.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923274|gb|EFR34092.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 184

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G + R    F L +L LV      P      ++  A    +    + +L  AI  L 
Sbjct: 38  HNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGA----EEAVPWRHLDSAIEFLE 93

Query: 86  FIYATTARNRNNFKSVLAPKEA---AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  R R   +++LA ++      + N+     +   +I G E  G+++E I  ++ 
Sbjct: 94  -------RCRAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQYADD 146

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
            +  P +    SLN+S A  + +++ 
Sbjct: 147 CLEIPQHGTKHSLNVSVATGIAIYDL 172


>gi|238921657|ref|YP_002935172.1| hypothetical protein NT01EI_3813 [Edwardsiella ictaluri 93-146]
 gi|238871226|gb|ACR70937.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 157

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N     L L+ P      +K    +        S+R   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFIWDDKRLRRAGLDYHEFASIRRHHD 62

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               ++      ++A T        S +  ++                ++FG E  GL +
Sbjct: 63  YSSFLSGEKPTRLFALT-TKGTPAHSDVTYRDGDY-------------LLFGPETRGLPS 108

Query: 135 ---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + +  +  I   P+     S+N+S AV ++V+E    
Sbjct: 109 TILDSLPTAQKI-RIPMLASSRSMNLSNAVSVVVYEAWRQ 147


>gi|91787138|ref|YP_548090.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91696363|gb|ABE43192.1| RNA methyltransferase TrmH, group 2 [Polaromonas sp. JS666]
          Length = 183

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 35/193 (18%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P   +++    I+LV+P++  N G V R   N    +L LV P      +K    +    
Sbjct: 12  PASNDNSAMFNIVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRA--GL 68

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG--- 122
              +  +V                   R+ +    + + +  A  L      G       
Sbjct: 69  DYHEYAQVL------------------RHASWQALLDSQRPPAGRLFAMTTHGAGSVYDM 110

Query: 123 -------IIFGRERWGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  ++FG E  GL     E   ++  +   P+ P   SLN+S  V + V+E    +
Sbjct: 111 RFLPGDWLVFGAETRGLAPDVRESFPMAQRL-RVPMQPGQRSLNLSNTVAVTVFEAWRQN 169

Query: 173 IVSSEKNVKEQNT 185
             +   +    + 
Sbjct: 170 GFAGSHHPAAADQ 182


>gi|78212857|ref|YP_381636.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9605]
 gi|78197316|gb|ABB35081.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. CC9605]
          Length = 163

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 30/168 (17%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I L +PQ+  N G +AR    F +  L L+ P      +++   +         V
Sbjct: 4   ISPLRIALFEPQIPPNTGNIARTSAAFRIP-LTLIEPLGFKVDDRSVRRA--GLDYWPHV 60

Query: 72  RV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++     F   +  +     +   + R  ++  S    +                 ++FG
Sbjct: 61  QLSIASNFPEFQAGLRPGQRLIGCSRRGGSSLTSFTFQR--------------GDVLLFG 106

Query: 127 RERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166
           RE  GL        ++I++ P+             SLN+S A  L+ +
Sbjct: 107 REDTGLPESVRDACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154


>gi|116491172|ref|YP_810716.1| rRNA methylase (SpoU class) [Oenococcus oeni PSU-1]
 gi|118587352|ref|ZP_01544778.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163]
 gi|290890688|ref|ZP_06553758.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429]
 gi|116091897|gb|ABJ57051.1| Predicted rRNA methylase (SpoU class) [Oenococcus oeni PSU-1]
 gi|118432176|gb|EAV38916.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163]
 gi|290479663|gb|EFD88317.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429]
          Length = 168

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 26/178 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L +P +  N G +AR     N  +L L+ P      +K    +        +V   + 
Sbjct: 4   IVLFEPSMPANTGNIARTATAIN-ARLHLIKPLGFDLDDKKVIRA--GLDYWSNVDLVIH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
            NL E +         T  N   F      K  +    +   +  +   +FG E +GL  
Sbjct: 61  ENLPEFLK--------TIGNGKLFLVSKYAK-ISYDQADFSNTSVDQYFLFGNEAYGLPE 111

Query: 134 -----NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
                N E       I  P N     SLN+S +V ++++E M        + + E + 
Sbjct: 112 VFMRKNPE-----KAIRIPQNDQHVRSLNLSNSVAIVLYEAMRQQNFHGLERIHEYDQ 164


>gi|134096081|ref|YP_001101156.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133739984|emb|CAL63035.1| Putative RNA methyltransferase [Herminiimonas arsenicoxydans]
          Length = 160

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 25/172 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++LV+P++  N G + R   N    QL LV P  G+P + A+   A      D    +V 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTG-AQLHLVEPL-GFPLDDAKMRRAG-LDYHDYAQMKVH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-----IIFGRER 129
            + +  +                 + +   +  A+  +                +FG E 
Sbjct: 61  HDWQAFLDSF-----------PADQPLNPARMFALTTHGSTPFAGLAFQPGDIFVFGSET 109

Query: 130 WGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            GL     E       I   P+ P   SLN+S  V ++V+E    +  +  +
Sbjct: 110 KGLAPALRESFPPVQRI-RLPMRPDNRSLNLSNTVAVVVYEAWRQNGFTGGQ 160


>gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W]
 gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11]
          Length = 229

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E +   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-VDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|149378386|ref|ZP_01896087.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
           DG893]
 gi|149357335|gb|EDM45856.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
           DG893]
          Length = 245

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 71/181 (39%), Gaps = 17/181 (9%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       Q  ++ +  + +L D      N+  + R+   F L  + +V PR+G+   
Sbjct: 1   MTPERLARIKQTLDTRQPDLSVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPREGF--- 57

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +A   +A       +      + +A+++L        +    + + L+ +       +  
Sbjct: 58  RAFRKTAGGSYNWVTTHTHPTMDDAVSELK------GQGHKLYAAQLSDRAIDYREADFT 111

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                  +I G E  G+++     ++  I  P+  +  SLN+S A  +++ E      ++
Sbjct: 112 VP---CTVIMGNEVDGVSHGAAEQADEHIVIPMMGMVESLNVSSACAIILSEAQRQRKLA 168

Query: 176 S 176
            
Sbjct: 169 G 169


>gi|56752229|ref|YP_172930.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|81300683|ref|YP_400891.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
           7942]
 gi|56687188|dbj|BAD80410.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
 gi|81169564|gb|ABB57904.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
           7942]
          Length = 156

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 26/172 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P ++L  P++  N G +AR     + T L L+ P     S++    +         V++ 
Sbjct: 2   PQVVLYQPEIPPNTGNIARTCAATD-TPLHLIEPLGFELSDRYLKRA--GLDYWPYVQLT 58

Query: 75  SNLKEAI-------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++   ++            I  TT        + L     A              ++FGR
Sbjct: 59  THPDWSVFRQQQQQQGGRLIAFTT----KGELNYLDCDFQATDW-----------LLFGR 103

Query: 128 ERWGLTNEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENSIVSSEK 178
           E  GL  + +A  +  +  P       SLN+S +V + ++E       ++  
Sbjct: 104 ETSGLPEDVLASCDHRVRIPTPQAGVRSLNLSVSVAIGLFEARRQVYFATNP 155


>gi|197266019|ref|ZP_03166093.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197244274|gb|EDY26894.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 229

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++   ++E +      +     +
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYLRENSMLPEYEQQRLLFE 189


>gi|319764160|ref|YP_004128097.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
           BC]
 gi|330826483|ref|YP_004389786.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
           K601]
 gi|317118721|gb|ADV01210.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           BC]
 gi|329311855|gb|AEB86270.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           K601]
          Length = 158

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 27/172 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G V R   N     L LV P      ++    +       +   V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCM-LHLVEPLGFSMEDRLMRRA--GLDYHEYAEVRRH 60

Query: 74  ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               + L++   D   ++A TT   R+ + +   P +                 +FG E 
Sbjct: 61  SGWTALLRDMRPDPSRMFALTTHGTRSVYDAGFLPGDWM---------------VFGAES 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            GL  E  E       +  P+ P   SLN+S AV + V+E    +   +   
Sbjct: 106 RGLPPELRETFPPAQRLRLPMLPGQRSLNLSNAVAVTVYEAWRQNSFLAPAP 157


>gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
 gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
          Length = 263

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 23/172 (13%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            + G  ++L   Q   N G + R+     + Q+   N      S K   +   A  ++  
Sbjct: 109 PSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCSNDSVDIWSPKVLRAGMGAHFLLS- 167

Query: 71  VRVFSNLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +FS ++     E     H I+AT    RN     +                Q    +F
Sbjct: 168 --IFSRVELSAWMETYQ--HQIWATALGGRNIGLYEMD-------------LSQPCAWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E  G++      ++A +  P+     SLN++ A  + ++E M   I +  
Sbjct: 211 GNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQA 262


>gi|53711292|ref|YP_097284.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60679598|ref|YP_209742.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           NCTC 9343]
 gi|253564599|ref|ZP_04842056.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|255011970|ref|ZP_05284096.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           3_1_12]
 gi|265764737|ref|ZP_06093012.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|313149806|ref|ZP_07811999.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|52214157|dbj|BAD46750.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60491032|emb|CAH05780.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           NCTC 9343]
 gi|251948375|gb|EES88657.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263254121|gb|EEZ25555.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|301161080|emb|CBW20617.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           638R]
 gi|313138573|gb|EFR55933.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 175

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 11/167 (6%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P V++L D +   NIG V R    F +  + L       P  +   ++  A
Sbjct: 15  EEFKEADKLPLVVVLDDIRSLHNIGSVFRTADAFRIECIYLCGITATPPHPEMHKTALGA 74

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGI 123
           +  +D  +  +N  E + +L        R+       +   E +I+L+E  +   +   +
Sbjct: 75  EFTVDW-KYVNNAVETVDNL--------RSEGYVVYSVEQAEGSIMLDELTLDRSKKYAV 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 126 VMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172


>gi|297804698|ref|XP_002870233.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316069|gb|EFH46492.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 222

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 33/160 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     N+G +AR+   F +T+L LV    G     A  S  +A  +    R F +
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILV----GRRDFNAFGSHGSASHI--RFRHFHS 61

Query: 77  LKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           L EA        D                  +   + A  +NE  F  +N   + G E  
Sbjct: 62  LIEARTYLKEEKDCDICG-------------VEIADGASAVNEHPFK-RNTAFLLGNEGS 107

Query: 131 GLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166
           GL+ +E  + +  +  P    +     SLN++ A  +++ 
Sbjct: 108 GLSAKEYEICDFFVYIP---QYGCGTASLNVTVAASIVLH 144


>gi|227529001|ref|ZP_03959050.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC
           49540]
 gi|227351013|gb|EEJ41304.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC
           49540]
          Length = 169

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 28/166 (16%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+L +P    N G +AR     N   T+L L+ P      +K    +       D V++ 
Sbjct: 5   IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59

Query: 74  -FSNLKEAIA---DLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +L+E ++   D+  +Y  +   +R+                    +  +   +FG+E
Sbjct: 60  YHDDLREFVSTVPDISKLYLVSKFASRDYTDVDYT-------------ADGDHYFLFGKE 106

Query: 129 RWGLTNEEIALSNA-IISFPVNP-LFPSLNISQAVLLMVWECMENS 172
             GL  E +       I  P N     +LN+S +  ++++E +   
Sbjct: 107 TTGLPEEFMRRYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQ 152


>gi|254451585|ref|ZP_05065022.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238]
 gi|198265991|gb|EDY90261.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238]
          Length = 152

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           +LV P++  N G + R      L +L L+ P      EKA   +         V++  + 
Sbjct: 4   VLVTPEIPYNTGAIGRTCVALEL-ELILIRPYGFSLDEKAVRRA--GQDYWKHVQLSEYD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + ++ + D           R   + S+   +E             +  ++FG E  GL  
Sbjct: 61  SWQDFMDD-----------RKPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPA 109

Query: 135 EEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
             +    + +   P+ NPL  SLN++     ++++ M   +
Sbjct: 110 TVLDGMDDRVFHLPMRNPLVRSLNLANVATAVIYQAMRTQL 150


>gi|5281018|emb|CAB45991.1| OBP33pep like protein [Arabidopsis thaliana]
 gi|7268299|emb|CAB78594.1| OBP33pep like protein [Arabidopsis thaliana]
          Length = 278

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 33/160 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     N+G +AR+   F +T+L LV    G     A  S  +A  +    R F +
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILV----GRRDFNAFGSHGSASHI--RFRHFHS 61

Query: 77  LKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           L EA        D                  +   + A  +NE  F  +N   + G E  
Sbjct: 62  LIEARNYLKEEKDCDICG-------------VEIADGASAVNEHPFK-RNTAFLLGNEGS 107

Query: 131 GLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166
           GL+ +E  + +  +  P    +     SLN++ A  +++ 
Sbjct: 108 GLSAKEYEICDFFVYIP---QYGCGTASLNVTVAASIVLH 144


>gi|156936222|ref|YP_001440138.1| putative tRNA/rRNA methyltransferase YibK [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156534476|gb|ABU79302.1| hypothetical protein ESA_04121 [Cronobacter sakazakii ATCC BAA-894]
          Length = 157

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 43/171 (25%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP-----------RDGWPSEKARSSSANAD 65
           I+L +P++  N G + R   N    +L ++ P           R G    +  +   +AD
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRHAD 62

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                   ++   EA         TT            P  +A+        G    ++F
Sbjct: 63  --------YAAFLEAEKPQRLFALTTKG---------TPAHSAV----SYQDGDY--LMF 99

Query: 126 GRERWGLTNEEIALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  GL    +   + +     I  P+ P   S+N+S AV ++V+E    
Sbjct: 100 GPETRGLPASIL---DVLPQEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM
           2032]
 gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus
           propionicus DSM 2032]
          Length = 269

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G + R+      +++ L   R    +     +SA A   +   +V  
Sbjct: 122 ILVLDSLQDPRNVGSILRSALAAGFSRVILTRERSVPLTGTVARTSAGAVSHLRLCQVV- 180

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL +A+  L     +I+   A            +  A  +    FSG  + ++ G E  G
Sbjct: 181 NLVDALNRLKEQGFWIFGAIA------------EANAAPIYTTDFSG-PICLVIGSEGKG 227

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +        + +++ P+   F SLN S A  ++++E    S+
Sbjct: 228 IRPLVRKQCDVLVTIPMQASFNSLNASVAAAVIMFEIARRSL 269


>gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
 gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
          Length = 250

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 21/157 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA---- 82
           N G +AR      +  + + +      +  A  +SA A   I   R  +NL   I     
Sbjct: 110 NFGAIARTCECAGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCR-ENNLTNTIKFLKD 168

Query: 83  -DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                + AT               E       +        II G E  G+  E +AL +
Sbjct: 169 SGFKIVAAT---------------EKGDYDYTKATYTDPTCIIMGAEDTGVPYEHLALCD 213

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             I  P+     SLN+S A  ++++E ++    ++E+
Sbjct: 214 EWIKIPLFGSIESLNVSVAAGILIYEAVKQRGFTNEE 250


>gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 273

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 18/176 (10%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P+L  +A+  V++L D     N+G + R      +  + L +PR   P   +A   S
Sbjct: 109 PSVPELIAAARR-VLVLEDLVDHGNVGAIYRCAAALGVDAVVL-SPRCADPLYRRAVKVS 166

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQN 120
             A   I   R+  +    + DL        R        L P ++A+ +++ +  +G+ 
Sbjct: 167 MGAVFAIPYARM-DDWYHGLGDL--------RAAGFRLLALTPDQSAVPIDKAVPAAGER 217

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFP-----SLNISQAVLLMVWECMEN 171
           V ++ G E  GL++  +  ++  +  P++P        SLN+  A  +  +  M +
Sbjct: 218 VALLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRGVDSLNVVAAASIACYGLMRS 273


>gi|11499975|ref|NP_071221.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
 gi|3915500|sp|O30272|Y2399_ARCFU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase AF_2399
 gi|2650693|gb|AAB91264.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 224

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 50/145 (34%), Gaps = 12/145 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG   R    F    + L   R G   E A  +SA A   I   RV  N   AI  L  
Sbjct: 90  NIGACIRTAEFFGAAGVVLPKRRVGSIQEGAVKASAGAVFHIPIARV-ENFASAIKKLKK 148

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           +  TT          LA       L E +       ++ G E  G++       + ++  
Sbjct: 149 LGFTT----------LAADLDGEDL-EAVSLLLPAAVVIGGEDRGVSRPVKKQCDFVVKI 197

Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
           P      SLN+S A  + ++     
Sbjct: 198 PGVGKVNSLNLSVAAGIFLYTLSRQ 222


>gi|146309256|ref|YP_001189721.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145577457|gb|ABP86989.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas mendocina
           ymp]
          Length = 154

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 25/169 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N    QL L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGC-QLHLIEPLGFELDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L+  +  L    ++A T +    F                I        +FG E  GL
Sbjct: 61  ADLQSCLDSLGQPRLFAFTTKGSQPFH--------------EIAYQPGDAFLFGPESRGL 106

Query: 133 TNEEIALS---NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             EE+  +      +  P+     SLN+S  V + V+E    +  +  +
Sbjct: 107 P-EEVRNALPPEQRVRLPMRAGCRSLNLSNTVAVTVYEAWRQNGFAEAE 154


>gi|317128071|ref|YP_004094353.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473019|gb|ADU29622.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 157

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 23/166 (13%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++L +P++  N G +AR     N + L L++P      ++    +        +V V
Sbjct: 2   GIHVVLHEPEIPANTGNIARTCAGTNAS-LHLIHPLGFSTDDRMLKRAGC--DYWPNVHV 58

Query: 74  --FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             + N+++  A       F+  T+       K       + +         ++   IFG+
Sbjct: 59  EHYDNIEQLFARFPEGEFFLIETSG-----EKYYHDFDYSDLE--------KDYFFIFGK 105

Query: 128 ERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL  + I          P      SLN+S    ++V+E +   
Sbjct: 106 ETKGLPQDLIDKYKERCFRIPQTDKIRSLNLSNTAAILVYEALRQQ 151


>gi|262283231|ref|ZP_06060998.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262261483|gb|EEY80182.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 168

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 20/174 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 6   IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDISYY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +  +                +++     +   E          +FGRE  GL  
Sbjct: 63  ESLEDFMEKMD-----------GQLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLP- 110

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           EE    +    +  P+N     SLN+S  V ++V+E +        + V E   
Sbjct: 111 EEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFVGLELVHEYEA 164


>gi|329770522|ref|ZP_08261900.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325]
 gi|328836271|gb|EGF85940.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325]
          Length = 157

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 28/170 (16%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++  N G +AR     N   T+L L+ P      +K    +         +   
Sbjct: 4   IVLYQPEIPANTGNIARTCVGTN---TRLHLIRPLGFSIDDKQVKRA--GLDYWKDLDLV 58

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI----FSGQNVGIIFGRE 128
           V+ + +E + +               K      +              + + +  IFGRE
Sbjct: 59  VWDSFEEFLEN------------TEDKHYYLITKFGEKNYSNFDFSNKNDEEIYFIFGRE 106

Query: 129 RWGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GL  E  E    N  +  P++    SLN+S    L+++E +     SS
Sbjct: 107 TKGLPKEFREKYN-NQCLRIPMSDKVRSLNLSNTAALIIYEALRQQNFSS 155


>gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
           centenum SW]
 gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
           centenum SW]
          Length = 251

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 13/158 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74
           VI+L       N+G + R+   F   +  +V  R   P +     +++ A   +  VRV 
Sbjct: 106 VIVLDQVTDPHNVGAIMRSAAAFG-ARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRV- 163

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +NL  A+  L          +  F +V   +  A  L+E   +G    ++ G E  GL  
Sbjct: 164 TNLARALDTL---------KQAGFWTVGLDESGARPLHEVDLTG-RTALVLGSEGEGLRR 213

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + I   P      SLN+S A  + ++E     
Sbjct: 214 LTGERCDEIARLPTGGPVGSLNVSNAAAVALYEVARRR 251


>gi|146280742|ref|YP_001170895.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
 gi|21425310|emb|CAC79245.1| putative RNA methylase [Pseudomonas stutzeri]
 gi|145568947|gb|ABP78053.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas stutzeri
           A1501]
 gi|327479010|gb|AEA82320.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 160

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 42/180 (23%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N     L L+ P      +K    +       +       
Sbjct: 4   VILFQPEIPPNTGNIIRLCANTGCH-LHLIEPLGYELDDKRLRRA--GLDYHEYATLERH 60

Query: 75  SNLKEAIA---------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           ++L   +A         D   ++A T +    F  V   +                 ++F
Sbjct: 61  ADLPSCLARIGIDAANPDGPRLFAFTTKGSQPFHEVRYRR--------------GDALLF 106

Query: 126 GRERWGLT--------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E  GL         NE+       +  P+ P   SLN+S  V + V+E       + E
Sbjct: 107 GPESRGLPPDIRDALPNEQ------RLRLPMRPDSRSLNLSNTVAIAVYEAWRQHGFAME 160


>gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 274

 Score = 68.5 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 19/168 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA 64
           PQ   +  G V+IL   Q   N+G + R       TQ + L      W S K   +   A
Sbjct: 119 PQSIATLDGDVVILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLW-STKVLRAGMGA 177

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVG 122
             ++D       L E  ++   + A TA        +LA    A      +       V 
Sbjct: 178 HKLLD-------LYEGWSNQQVLSAITA-------PLLAATADAEQDLYSLKKDLLHPVA 223

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            + G E  G++ + +A +   +S P++P   SLN+S A  + ++E + 
Sbjct: 224 WVMGSEGQGISEDLLAQAKG-VSIPIDPRVESLNVSTAAAICLFETLR 270


>gi|330997272|ref|ZP_08321125.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
 gi|329571067|gb|EGG52774.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
          Length = 180

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A + + + K P +++L   +   N+G V R+   F +  + L       P  +   ++ 
Sbjct: 17  SAEEFKTAEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVESVYLCGITATPPQVEIHKTAL 76

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
            A+  +D V  +   ++A+  L        +        +   E +++L + R    +  
Sbjct: 77  GAEDSVDWV-YYERTQDAVEHL--------KAEGYEVWAVEQVEGSVMLQDFRPDKAKKY 127

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            II G E  G+  E +   +  I  P      SLN+S    ++VWE   
Sbjct: 128 AIILGNEVKGVQQEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176


>gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 237

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF 74
           ++L   +   N+G + R           +V P  R    ++    ++A A   +  VRV 
Sbjct: 90  VVLDGVEDPHNLGAIVRTAHAAGAGA-VIV-PERRAAGVTDVVAKAAAGALEHLPVVRV- 146

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +N+  A+ DL        + R  +   L   E      ++I   +   ++ G E  GL  
Sbjct: 147 TNINRALEDL--------KERGMWIYGLD--ERGTESYDQIDYAKKSVLVLGGEGKGLHE 196

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +     + ++  P+     SLN+S A  ++++E      V
Sbjct: 197 QVRKHCDVLVRIPMAGQISSLNVSVAAGVVLFEWRRRRPV 236


>gi|226942627|ref|YP_002797700.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
 gi|226717554|gb|ACO76725.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
          Length = 153

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G + R   N   + L L++P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNIIRLCANTGCS-LHLIDPLGFELDDKRLRRA--GLDYHEYATLKRH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++L   +  L    ++A T +    + SV   +                  +FG E  GL
Sbjct: 61  ADLPSCLESLGRPRLFAFTTKGSQPYHSVAYRR--------------GDAFLFGPESRGL 106

Query: 133 TNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E  E       +  P+     SLN+S  V + V+E    
Sbjct: 107 PQEVRESLPPEQRLRLPMRSACRSLNLSNTVAVAVYEAWRQ 147


>gi|157150281|ref|YP_001450942.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075075|gb|ABV09758.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 168

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 6   IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDISYY 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L++ +  +                +++     +   E          +FGRE  GL  
Sbjct: 63  ESLEDFMEKMD-----------GQLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLP- 110

Query: 135 EEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           EE    +    +  P+N     SLN+S  V ++V+E +        + V E
Sbjct: 111 EEFMRQHPEKALRIPMNDQHVRSLNVSNTVCMIVYEALRQQNFVGLELVHE 161


>gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320]
 gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320]
 gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 239

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 18/174 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  V R      + ++        WP EK R     +A ++  + +V     + +AI
Sbjct: 30  SHNVAAVIRTADAVGIPKIH-----AIWPEEKMRMLVSPAAGSNSWV-NVNTHPTIADAI 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T R +          + A+   E I   Q   II G+E+ G++ E IAL++
Sbjct: 84  N--------TFRAQGMQVLATHLSDKAVDFRE-IDYTQPTCIIMGQEKTGISPEAIALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
             I  P+  +  SLN+S A  L+++E       +   N  E    A + ++L F
Sbjct: 135 QDIIVPMMGMVQSLNVSVASALILYEAQRQRQAAGMYNRTESALTAEEQQILLF 188


>gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 280

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 16/175 (9%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           TP+A ++  +    V +L   +   N G V R         + L +      + KA  +S
Sbjct: 106 TPFA-EILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRAS 164

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP----KEAAIVLNERIFS 117
             +   +        ++EA+A L          R+    +LA     ++      ++   
Sbjct: 165 VGSLFHLPVAVGVP-VEEAVAGL----------RDAGVRILAADGAGEDDLDAELDKGTM 213

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G     +FG E WGL  E   L++A++  P++    SLN++ A  + ++      
Sbjct: 214 GGPTAWVFGNEAWGLPEETRELADAVVRVPIHGKAESLNLATAAAVCLYASARAQ 268


>gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 245

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 14/169 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           LQN +   +++L       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCA-VIV-PKDKSAQLTAIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V+  +RV +NL   + +L          ++N   V    EA   L +   +G  + ++ 
Sbjct: 147 EVVPLIRV-TNLARTLRELQ--------QKHNIWVVGTAGEATNTLYQTQLTGG-LALVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           G E  G+        + +IS P+     SLN+S A  + ++E +   + 
Sbjct: 197 GAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLA 245


>gi|326692551|ref|ZP_08229556.1| rRNA methylase (SpoU class) [Leuconostoc argentinum KCTC 3773]
          Length = 170

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 21/163 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P      +K    +       + V++  
Sbjct: 5   IVLFEPVMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRA--GLDYWEHVQLVK 60

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L + +         T R  ++   V           +   +  +   +FG+E  GL 
Sbjct: 61  HDSLPDFLD--------TLRETDHLYLVSKFANYDYTQPDYSVTDGDHYFLFGKETTGLP 112

Query: 134 NEEIAL---SNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             E+ +    +  I  P +     SLN+S  V ++++E +   
Sbjct: 113 --EVFMRQNPDKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQ 153


>gi|297623001|ref|YP_003704435.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297164181|gb|ADI13892.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 157

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L +P++  N+G +AR         L L+ P     S+ A   +       ++V++  +
Sbjct: 4   VALFEPEIAGNVGNIARTCAVVGAP-LHLIRPYGFRLSDAAVRRA--GMDYWEAVQLTQH 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A  + HF  A  A        V A    A V    +       ++FG E  GL    
Sbjct: 61  ASFAQFEAHFARAFEAGR------VFAFTTKATVGYSEVRYRPGDVLLFGPESRGLPEAV 114

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            AL++  +  P+     SLN++ +V + ++E       +     
Sbjct: 115 RALASP-VRIPMQGGARSLNLAVSVGVGLYEAWRQLGFAPTPPP 157


>gi|254430609|ref|ZP_05044312.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
 gi|197625062|gb|EDY37621.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
          Length = 155

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 36/174 (20%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NL 77
           L  PQ+  N G VAR        +L LV P     S++    +      +D        L
Sbjct: 2   LYQPQIPPNTGNVARTCAATA-QELHLVGPLGFEISDRTLRRAG-----LDYWPYVPLTL 55

Query: 78  KE---AIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                A   +       + A +A   +      A +                 ++FGRE 
Sbjct: 56  HADWPAFTGVQGRQGGRLVALSA---HGITPYTAFRFQPDDW-----------LLFGRES 101

Query: 130 WGLTNEEIALSNAIISFPV-----NPL--FPSLNISQAVLLMVWECMENSIVSS 176
            GL  E +  ++A+++ P+     +P     SLN+S AV ++++E +       
Sbjct: 102 DGLPAEPLQRADAVLTIPMRRSRHHPEGGVRSLNLSVAVGVVLFEALRQEADRP 155


>gi|322391473|ref|ZP_08064942.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145556|gb|EFX40948.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 167

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+ +N G +AR     N   L ++ P      ++    +       D + +  +
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNAP-LHIIKPMGFPIDDRKMKRA--GLDYWDKLDIYFY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E +  ++               +++     +  +    +  N   +FGRE  GL  
Sbjct: 62  DSLDEFMGKMN-----------GQLYLISKFAEKVYSDADFTTEGNHYFLFGREDKGLPE 110

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           + +    +  +  P+N     SLN+S  V ++V+E +   
Sbjct: 111 KFMREHPDKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 150


>gi|87199225|ref|YP_496482.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134906|gb|ABD25648.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 151

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 25/168 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV- 73
            I L +P++  N+G V R      +  + LV P    W   + R ++      ID V+V 
Sbjct: 2   RIALYEPEIAGNVGAVMRLGACLGV-NVDLVEPMGFAWEDRRVRRAAM---DYIDHVKVT 57

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F   + ++A    +  TT       +S+   +  A  +           ++FG+E 
Sbjct: 58  RHAGFGPFRASVAPGRLVLFTT----KAEQSLHDFRFRADDV-----------LLFGKES 102

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            G+ +E     +  +  P+ P   SLN++ A  L + E +  +     
Sbjct: 103 AGVPDEVAQACDERVRIPIRPEVRSLNLAIATALALGEALRQTGGLPP 150


>gi|87312115|ref|ZP_01094220.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM
           3645]
 gi|87285143|gb|EAQ77072.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM
           3645]
          Length = 168

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 24/176 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L +P++  N G + R        +L LV P     +++    +         +   V 
Sbjct: 9   IVLHEPEIPPNTGNIGRTCVAIG-AKLWLVKPLGFLVNDRELKRA--GMDYWQHLEWEVV 65

Query: 75  SN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L+E + D  F Y T    R+        ++                I+ G E  G
Sbjct: 66  EDWAHLQERLKDRRFFYLTKTAKRSYTTVDFQLED---------------AIVLGAESKG 110

Query: 132 LTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           L  E +A +    IS P+     SLN+S     + +E +    ++ +  +    +P
Sbjct: 111 LPPELLATTPENNISVPMRTEVRSLNLSATAATVAYEAVRQLTLAGQAKLPIGESP 166


>gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
          Length = 242

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 23/156 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74
           V+IL   Q   N+G + R+   F   Q+ + +P      ++KA  S+  A   +D VR  
Sbjct: 98  VLILDGVQDPGNLGTILRSALAFGFKQIVM-SPDCVDLYNDKALRSTQGAVFHLDIVR-- 154

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +L   I +L      + AT+                     + I S   +  + G E  
Sbjct: 155 DDLHHVIPELQKLGVRVIATS--------------LHNASSIDDIKSTDKMAFVMGNEGN 200

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G+ +E IA+S+A +  P++ +  SLN+  A  ++++
Sbjct: 201 GVRDETIAMSDASLYIPIDTM-ESLNVGVAAGIVMY 235


>gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
 gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 23/177 (12%)

Query: 2   TPYAPQ-LQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
            P  P+ +   A+   +I  +VD     NIG + R+     +  + L        + +A 
Sbjct: 137 APRTPEEVCRDARRVAVIHGVVDTT---NIGAIFRSAAALGIDAILLSPDSCDPLNRRAV 193

Query: 59  SSSANADCVIDSV---RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
             S  +  ++      R  S+L+E +       A T R+      +  P+         +
Sbjct: 194 RVSMGSVFLVPWTWLPRPVSSLRE-MGFCTASLALTDRS----VPIDYPE---------L 239

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + I+ G E  GL  E ++ S+ ++  P+     SLN++ A  +  WE     
Sbjct: 240 KEIPRLAIVMGTEDDGLPAEVLSESDYVVRIPMWHGVDSLNVAAASAVAFWELRARR 296


>gi|320451508|ref|YP_004203604.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
           SA-01]
 gi|320151677|gb|ADW23055.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
           SA-01]
          Length = 149

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 23/159 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75
           +L  P++ +N G +AR         L L+ P     S+     +         V  R+  
Sbjct: 5   VLFQPEIPQNTGNIARTAAALGWP-LHLIRPLGFRLSDPRLKRA--GLDYWPHVDLRLHD 61

Query: 76  NLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +   +++     ++A +AR       V                G    ++FG E  GL
Sbjct: 62  TWEAFWQSLPPGARVWAFSARGDTCLYGV------------SFQPGDY--LLFGPETRGL 107

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E + L    +  P+  L  SLN++ AV +  +E    
Sbjct: 108 PPEVLTLFPG-VYIPMPGLVRSLNLAVAVGVAAYEAYRQ 145


>gi|332299307|ref|YP_004441228.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176370|gb|AEE12060.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 184

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 14/146 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G + R    F L +L LV      P      ++  A    +    + +L  AI  L 
Sbjct: 38  HNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGA----EEAVPWRHLDSAIEFLE 93

Query: 86  FIYATTARNRNNFKSVLAPKEA---AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    R   +++LA ++      + N+     +   +I G E  G+++E I  ++ 
Sbjct: 94  QC-------RAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQYADY 146

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
            +  P      SLN+S A  + +++ 
Sbjct: 147 CLEIPQYGTKHSLNVSVATGIAIYDL 172


>gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
 gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
          Length = 248

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 11/167 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
               ++   +++L       NIG + R         + LV  +    +     +SA A  
Sbjct: 92  AAPRNSAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLVEGKGAPVNAVVHKASAGALS 151

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +   +V  +L   +  LH               VLA    A          +   I+ G
Sbjct: 152 HMRVAKV-KSLVRCLELLHR----------EGIQVLATDMEAETNYTDADFRKATAIVLG 200

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            E  GL  E +   + ++  P+     SLN+S +  +M++E M   +
Sbjct: 201 AEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLYEAMRQRL 247


>gi|15234624|ref|NP_193287.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|26449903|dbj|BAC42073.1| OBP33pep like protein [Arabidopsis thaliana]
 gi|28827336|gb|AAO50512.1| putative OBP33pep protein [Arabidopsis thaliana]
 gi|332658215|gb|AEE83615.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 222

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 33/160 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     N+G +AR+   F +T+L LV    G     A  S  +A  +    R F +
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILV----GRRDFNAFGSHGSASHI--RFRHFHS 61

Query: 77  LKEAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           L EA        D                  +   + A  +NE  F  +N   + G E  
Sbjct: 62  LIEARNYLKEEKDCDICG-------------VEIADGASAVNEHPFK-RNTAFLLGNEGS 107

Query: 131 GLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166
           GL+ +E  + +  +  P    +     SLN++ A  +++ 
Sbjct: 108 GLSAKEYEICDFFVYIP---QYGCGTASLNVTVAASIVLH 144


>gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
 gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
          Length = 273

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 13/169 (7%)

Query: 3   PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P  P ++   +G   V+++       NIG + R+     +  + L        + +A   
Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  +  ++        L ++IA L  +   TA      +SV  P +   +  E       
Sbjct: 167 SMGSVFLVPWTW----LDDSIASLSRLGFRTAAMALTDRSV--PLDDPALATE-----PR 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           + I+ G E  GL  E I  ++ ++  P+     SLN++ A  +  W+  
Sbjct: 216 LAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264


>gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
 gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
          Length = 250

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150

Query: 62  ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +    + +NL E   IA L              K  L      +    + F   
Sbjct: 151 MGAQFSLKFSYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKDFKLA 198

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           N  ++FG E  G+ +  +         P      SLN++QA  + ++E +   +
Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|322830295|gb|EFZ33372.1| hypothetical protein TCSYLVIO_262 [Trypanosoma cruzi]
          Length = 392

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 26/171 (15%)

Query: 15  PVIILV---DPQLGENIGMVARAMWNFNLTQL-----RLVNPRDGWP--SEKARSSSA-- 62
           PV + V   +P+   N+G + RA+  F  + L     RL+      P    +A   S+  
Sbjct: 167 PVRVFVAIENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGFSSPY 226

Query: 63  -------NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                  N   V++      + +  +  +  I   T          L   +       + 
Sbjct: 227 VAIPDITNLFEVLEGAT---SFEAVVVAVDMIGGATPLP-LYRHPCLHALDGGARKRSQC 282

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                V  +FG E   +  E +A  ++ +  P      SLN++ AV ++++
Sbjct: 283 TLPNLVFYLFGPEDGTIRQEVLARCHSAVFLPT---QGSLNLAAAVNVVLY 330


>gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
           KC4]
 gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
           KC4]
          Length = 254

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 11/167 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++  +    +++L       N+G + R      +  + + + R    + +A  +SA    
Sbjct: 89  EILATHPSCLLVLAYITDPRNLGAILRTAAAVGVEGVIIPSRRAAGLTAEALKASAGGAE 148

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +   RV +NL +          T    +     VL  +  A V        + + ++ G
Sbjct: 149 HVKVARV-TNLAQ----------TLRYLKEQGFWVLGAEADAKVSLWEAEWNEPLVVVIG 197

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            E  GL        + ++  P     P LN S A  ++++E +   +
Sbjct: 198 GEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILYEVLRRQM 244


>gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 264

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 67/166 (40%), Gaps = 11/166 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            LQ      ++ L   Q   N+G + R    F    L +   R    +     ++A    
Sbjct: 109 SLQPKENQLLLALDSIQDPRNLGAIIRTAAAFGADGLLIPKDRSAPLTGTVMKAAAGTLP 168

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++   RV +NL +++A L          ++ F    A  +A   L++  FSG  + ++ G
Sbjct: 169 LLTICRV-TNLSQSLAQL---------KKHGFWIYGAGGQAPQQLHQTSFSG-PICLVMG 217

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E+ GL        + +++ P+     SLN++ A  +++ E     
Sbjct: 218 NEQKGLRPLVSRHCDHLVAIPMAAGVESLNVAVATGVILSEIRRQQ 263


>gi|208778946|ref|ZP_03246292.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
 gi|254372520|ref|ZP_04988009.1| hypothetical protein FTCG_00082 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570247|gb|EDN35901.1| hypothetical protein FTCG_00082 [Francisella novicida GA99-3549]
 gi|208744746|gb|EDZ91044.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
          Length = 155

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 24/156 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I L +P++  N G + R   N    +L L+ P      +K    +       +    +++
Sbjct: 4   IALYEPEIPPNTGNIIRLCANVG-AKLHLIEPFGFKLEDKQLRRA--GLDYHEFADLKIY 60

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N  E      D   I+A T + +  +  V    +                ++FG E  G
Sbjct: 61  KNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------ILLFGPETRG 105

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
           L  + + L     +  P++    SLN+S +V ++++
Sbjct: 106 LPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141


>gi|145636678|ref|ZP_01792345.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|145270204|gb|EDK10140.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|301169483|emb|CBW29084.1| predicted rRNA methylase [Haemophilus influenzae 10810]
          Length = 160

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +                 K + A        + ++       ++FG E  G+  
Sbjct: 61  KTFEAFLE------------SEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|145640854|ref|ZP_01796436.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|145274368|gb|EDK14232.1| rRNA methylase [Haemophilus influenzae 22.4-21]
          Length = 160

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +                 K + A        + ++       ++FG E  G+  
Sbjct: 61  KTFEAFLE------------SEKPKRLFALTTKGSPAHSQVKFKLGDYLMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPMKQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|332969175|gb|EGK08207.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 302

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 14/162 (8%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +G  ++L   Q   N+G V R+     +  + L +      + K   +   A  ++    
Sbjct: 153 QGDCVVLERIQDAGNVGAVLRSAAAAGIVHIILSDGCADAYAPKVLRAGMGAHFLLHIHE 212

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAP-KEAAIVLNERIFSGQNVGIIFGRERWG 131
                            T  R++ + + ++    E        +   Q    IFG E  G
Sbjct: 213 RVD-------------LTQWRSQYHDRVLVTALSEHNNFSLYDLTLQQPSAWIFGNEGSG 259

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++ +   ++ A +  P+     SLNI+QA  + ++E M   +
Sbjct: 260 VSPQIQNIATANVKIPMLGATESLNIAQAATVCLFEQMRQRL 301


>gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae PittGG]
 gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG]
          Length = 246

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     V++L       N+G   R        +  +V P+D     +   R  +  A 
Sbjct: 89  LSNKQNPLVLVLDGVTDPHNLGACLRTADAAG-AEAVIV-PKDKSAQLTSIVRKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + S
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246


>gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
 gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
          Length = 261

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 23/157 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK-- 78
           Q   N+G + R      +  + L +        K   +SA A      V +F  S+LK  
Sbjct: 120 QDPGNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWF---QVPIFISSDLKRI 176

Query: 79  -EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            E   +  F I AT       +  +                 +   I+ G E  GL++  
Sbjct: 177 VEKYKNNGFNIVATLPNTTQTYWHLQL--------------TKPTLILLGNEGSGLSDSL 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++L+N I+S P++    SLN++ A  L+++E     I
Sbjct: 223 VSLANEIVSIPLSEGIESLNVAIATALILYEAXRQQI 259


>gi|229823128|ref|ZP_04449197.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271]
 gi|229787294|gb|EEP23408.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271]
          Length = 175

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I L  P +  N G ++R     N T L L+ P      +K    +       + V V   
Sbjct: 5   IALYQPLMPANTGNISRTCAATN-TPLHLIKPLGFSTDDKMLKRA--GLDYWEHVEVHYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLA---PKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L++ +A +                ++    P+        +  +G+    +FG+E  G
Sbjct: 62  ESLEDFLAFV----------GERPLYLITKFAPRIYCQADLAQNSAGEQ-FFLFGKETTG 110

Query: 132 LTNE--EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSS 176
           L  +  E   ++  +  P+N     SLN+S    ++++E +       
Sbjct: 111 LPADLMEERKAD-CLRIPMNDQHVRSLNLSNTANIVIYEALRQQAFEG 157


>gi|227541536|ref|ZP_03971585.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182692|gb|EEI63664.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 436

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 49/212 (23%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKAR 58
            A  + N     V + V+     N G + R           L     V+P+ G   + AR
Sbjct: 203 SARDVLNGRPKLVSVPVETNEPGNAGTLIRVADAMG-ADCVLFAGDTVDPQSG---KAAR 258

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           SS+ +   +                        AR RN  K V   +E  + +      G
Sbjct: 259 SSAGSLFHIP----------------------VARERNIMKVVSMLRERGLAIAATAADG 296

Query: 119 ------------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                       Q    +FG E  GL  E  A ++  +  P+     SLN++ A  + ++
Sbjct: 297 EVDLTDAEDLLSQPTAWLFGNEAHGLPEELQAQADYRVRIPIRGRAESLNLATAASICLF 356

Query: 167 EC----MENSIVSSEKNVKEQNTP--ATKGEL 192
           E      + +  +    + E++ P  A   EL
Sbjct: 357 ESSKYQAKAAESARSGQISEEDVPEAAESDEL 388


>gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 152

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 28/163 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           ++LV P++  N G +AR     + T L LV+P     S++    +         V+++  
Sbjct: 5   VVLVAPEIPANTGNIARTCAATD-TPLHLVDPLGFRLSDRYLKRA--GLDYWQHVQLYRY 61

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
              S L +A  +  F +  + R +  +  V   P +                ++FG E  
Sbjct: 62  PSWSALVQAHPEARF-WCFSVRGKALYTEVTYQPGDW---------------LVFGSESR 105

Query: 131 GLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  + + L     +  P+     SLN+S AV + ++E +   
Sbjct: 106 GL--DPLFLETYPSVRIPLRGPVRSLNLSNAVAIALFEALRQQ 146


>gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
           SIP3-4]
          Length = 249

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 23/172 (13%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           L++    P   LV    +   N+G   R      +    ++ P+D     +   R  +  
Sbjct: 91  LESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAAGLNATVRKVACG 148

Query: 64  ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A   I  + V +    L+E      F+    A                 +   ++     
Sbjct: 149 AAETIPFIAVTNLARTLRELQEAGVFVVGAAA------------DAPGNLFTTKLA--GP 194

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  GL        + ++S P+     SLN+S A  + ++E     
Sbjct: 195 LALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQR 246


>gi|294631997|ref|ZP_06710557.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
 gi|292835330|gb|EFF93679.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
          Length = 290

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 22/155 (14%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDS---VRVF 74
            P    NIG + R+   F    L +          K+  +S     A  V+ S     V 
Sbjct: 124 RPTQPGNIGSIVRSADAFGADGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSPSHHEVV 183

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             L              A+ R   + V  +   E            Q V ++ G E  GL
Sbjct: 184 EWL--------------AKERAQGRPVAVVGTDEDGEADVSEFDLTQPVLLLIGNETAGL 229

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +     L + ++S P+     SLN S A  ++++E
Sbjct: 230 SAAWRDLCDHVVSIPMTGSASSLNASNAASVVLYE 264


>gi|145634823|ref|ZP_01790531.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittAA]
 gi|145267989|gb|EDK07985.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittAA]
          Length = 160

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +         + + +  F   L  K +      +   G    ++FG E  G+  
Sbjct: 61  KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2148]
 gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2148]
          Length = 251

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 23/172 (13%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           + +    PV+ILV        N+G   R+     +    +V P+D     S   R  +  
Sbjct: 95  MVDEKDSPVLILVLDGVTDPHNLGACLRSADAAGVD--AVVVPKDKSADLSPTVRKVACG 152

Query: 64  ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A  ++  VRV +    L        +I+          KS+                  +
Sbjct: 153 AGEIVPFVRVTNISRTLDALKERQVWIFGAAG---EAEKSIYDNDLTG-----------S 198

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  GL        + +I  P+     SLN+S A  + ++E +   
Sbjct: 199 MALVMGAEGAGLRRLTREHCDFLIKLPMAGSVSSLNVSVATGVCLFEVIRQR 250


>gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 255

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDS--- 70
           ++IL       NIG + R    FN+  L L  P    PSE A    +++ A  ++     
Sbjct: 104 IVILDQITDTHNIGSILRTSACFNIDALVL--PHHHSPSENASIAKAASGALDIVPLIYV 161

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRER 129
             +   ++      ++ Y                   A    + I + GQ   IIFG E 
Sbjct: 162 TNIVKTMESLKKIGYWCYGF--------------DCNAKENIDEIKNFGQKRVIIFGSEE 207

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            G+        + ++  P++ +  SLN+S A  + ++   
Sbjct: 208 KGMRRLVKESCDYLLKIPMSNVIDSLNVSNAAAIGLYSIY 247


>gi|145341523|ref|XP_001415856.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576079|gb|ABO94148.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 207

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 59/173 (34%), Gaps = 26/173 (15%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82
            NIG +AR    F +  L L+  R           S  AD  +     F +L+EA     
Sbjct: 12  HNIGTMARCCTAFGVKSLVLIGSRQF-----NTFGSHGADGHVHF-EHFDSLEEAREKLK 65

Query: 83  ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  I              +   + A  +    F+G N   I G E  G+T  + A+
Sbjct: 66  GERGCTQILG------------VEIVDDARAIESHPFTG-NTAFIMGNEGHGMTEAQKAI 112

Query: 140 SNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            +  +  P   P   SLN+S A  +++      +         E+   A + +
Sbjct: 113 CDGFVYIPQYGPGTASLNVSVAASIVMHHFASWAGYEERSREGEKFIVAERPQ 165


>gi|254362587|ref|ZP_04978683.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|261491660|ref|ZP_05988242.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261494221|ref|ZP_05990721.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|153094194|gb|EDN75079.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|261310124|gb|EEY11327.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261312675|gb|EEY13796.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 159

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L ++ P   GW  +K R S        + V +  
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPFGFGWDDKKLRRS---GLDYHEFVDIQK 59

Query: 74  FSNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + N ++ +       ++A T R   N   V         L +         ++FG E  G
Sbjct: 60  YKNFEDFLERAKPKRLFALTTRGEQNHSDV------KYELGD--------FLMFGPESRG 105

Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +      E+ +S  I   P+     S+N+S +V ++V+E    
Sbjct: 106 IPKPLLAEMPMSQKI-RIPMCKDSRSMNLSNSVAVVVYEAWRQ 147


>gi|320104128|ref|YP_004179719.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
 gi|319751410|gb|ADV63170.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
          Length = 505

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           LV P Q  ENIG   R+   F + ++ L          KA  +   A     + R+    
Sbjct: 354 LVLPFQDPENIGAALRSALAFGVGRVILTREAAHPFHPKALRAGGPA-----AARLELRF 408

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A+ADL        R +     +   ++ A    ++        +I G E  GL     
Sbjct: 409 GPALADL------CGREQFAVPRLALDRDPASPRLDQADWPARFALIAGLEGPGLAGIAT 462

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
                    P++P   SLN + +V + ++E           N+ 
Sbjct: 463 NWLQRR-RIPMSPRIESLNAAVSVAVALYEWRRGQPADWVANLA 505


>gi|229844634|ref|ZP_04464773.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|229812348|gb|EEP48038.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 6P18H1]
          Length = 160

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +         + + +  F   L  K +      +   G    ++FG E  G+  
Sbjct: 61  KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPMKQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|27364301|ref|NP_759829.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus CMCP6]
 gi|27360419|gb|AAO09356.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           CMCP6]
          Length = 228

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  + R      L ++  V     WP+E+ ++    SA A   ++ V    ++ +A+
Sbjct: 30  PNNVSAMIRTADATGLHKVHAV-----WPTEQMKTLKNTSAGARNWVE-VDTHDSIADAV 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    +A      + ++     + V   +I   Q   II G E+ G++ +  AL++
Sbjct: 84  ---------SALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
             I  P+  +  SLN+S A  ++++E       +      E +  A
Sbjct: 135 QDIMIPMVGMVQSLNVSVACAVILYEAQRQREAAGMYQNDESSIDA 180


>gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|298386955|ref|ZP_06996509.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
 gi|29340479|gb|AAO78271.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|298260105|gb|EFI02975.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
          Length = 175

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A + + + K P V++L D +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
            A+  +D  +  +N  +A+ +L        R        +   E +I+L+   +   +  
Sbjct: 73  GAEFTVDW-KYVNNAVDAVDNL--------RKEGYIVYSIEQAEGSIMLDRLELDKTKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172


>gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 250

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 13/160 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   NIG + R      LT++ L++      + KA  +   A   +   R F 
Sbjct: 104 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLIDGTVDPFNPKAIRAGMGAQFSLKF-RYFE 162

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  A+ +       T + R  +  +  P E     +E      +V ++FG E  G+ + 
Sbjct: 163 NL-SAVRNYP-----TLKERKIW--LTTPHEGVSCYSEEFKLSNSV-LVFGEEANGIEDF 213

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +         P      SLN++QA  + ++E +   ++ 
Sbjct: 214 SVG---EKTMIPTLSNIESLNVAQAATIYLFEGLRQKMLK 250


>gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179]
 gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179]
          Length = 245

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 18/171 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           LQ      +++L       N+G   R      +  + +   +    +  AR  +  A  V
Sbjct: 89  LQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDAVIIPRDKSAQLTSVARKVACGAAEV 148

Query: 68  IDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +  +RV +    LK    D + ++  T               EA   + +   +G  + +
Sbjct: 149 VPLIRVTNLARTLKTLQQDYNIWVVGTAG-------------EANSSIYQNKLTGA-LAL 194

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + G E  G+        + ++S P+     SLN+S A  + ++E +   + 
Sbjct: 195 VMGAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLFEIVRQRLA 245


>gi|301155324|emb|CBW14790.1| predicted rRNA methylase [Haemophilus parainfluenzae T3T1]
          Length = 158

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 21/169 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +   +  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               +  +                 K + A        +  +       ++FG E  G+ 
Sbjct: 60  HKTFEAFLE------------SEKPKRLFALTTKGSPAHSEVQFELGDYLMFGPETRGIP 107

Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
              +        I  P+     S+N+S +V + ++E           N+
Sbjct: 108 MSILDKMPMEQKIRIPMTANSRSMNLSNSVAVTIYEAWRQLGYEGAVNL 156


>gi|310287628|ref|YP_003938886.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
 gi|309251564|gb|ADO53312.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
          Length = 289

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 28/154 (18%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSV-- 71
             N G V RA        +  V+      + K   ++A +           D        
Sbjct: 139 PGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFGWAGE 198

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V   +    AD   +Y T  R          P+E   VL ++  SG    +IFG E  G
Sbjct: 199 KVLRTVA---AD---VYGTDGRE---------PRELPEVLRDQDLSGVGKAVIFGNEARG 243

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           L    +   + I+  P+     SLN++ +  +M+
Sbjct: 244 LEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
           MP688]
          Length = 249

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 23/172 (13%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           L++    P   LV    +   N+G   R      +    ++ P+D     +   R  +  
Sbjct: 91  LESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAAGLNATVRKVACG 148

Query: 64  ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A   I  + V +    L+E      F+    A                 +   ++     
Sbjct: 149 AAETIPFIAVTNLARTLRELQEAGVFVVGAAA------------DAPGNLFTTKL--DGP 194

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  GL        + ++S P+     SLN+S A  + ++E     
Sbjct: 195 LALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEARRQR 246


>gi|308807411|ref|XP_003081016.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
 gi|116059478|emb|CAL55185.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
          Length = 170

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 16/167 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRV 73
            ++LV+P++  N G VAR+     +  L LV+P       + + +         S  VRV
Sbjct: 13  AVVLVEPRIPGNTGCVARSCAAARVP-LHLVDPLFELDDARLKRA---GLDYWKSVCVRV 68

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             + +   A    +  T  R     K  L  +  A     R        ++FG E  GL 
Sbjct: 69  HPSWEAFYAYWRGVETTEKRLVGFSK--LGARPHAETGAYRRGDW----LLFGSEDKGLR 122

Query: 134 NEEIALSN---AIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSS 176
            + +        I   P++     SLN+S +  + ++E +       
Sbjct: 123 EDAMEACRQSGGIRRIPIDETHVRSLNLSVSAGIGIYEALRQLDGPP 169


>gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
 gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
          Length = 258

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q Q    G V+ L   Q   N+G + R       + L +        S K   +SA    
Sbjct: 103 QTQLPFTGLVLALETVQDPGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQWF 162

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            + ++ V  NLK          AT  +++     V+A   +A +    +   +   I+ G
Sbjct: 163 RL-AMSVTENLK----------ATVQQSQQAGMQVVATLPSATLTYWDVDWRKPSLILLG 211

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL+ +  A+++  +  P++P   SLN++ A  LM++E    
Sbjct: 212 NEGAGLSADLAAIADKQVRIPLSPGVESLNVAIAAALMLYEARRQ 256


>gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
           700122]
 gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
           700122]
          Length = 263

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 11/156 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       N+G +AR+      + + + N R    +     SSA +   +   +V +
Sbjct: 102 VVVLDHITDAGNLGAIARSAEVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQV-A 160

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL   +           R + N   V    E A     +      + ++ G E  G+++ 
Sbjct: 161 NLNAVLE----------RLKKNGFWVAGASEQAHHTVWKAPLYGKIALVMGNEGSGISHL 210

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                + ++  P      SLN++QA   +++E +  
Sbjct: 211 MQDNCDFLVKLPQEGKVGSLNVAQASTAVMYEWLRQ 246


>gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205]
 gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205]
          Length = 249

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 23/157 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +NL   +A
Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164

Query: 83  DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L       +  T          +L   E A+ + +  FSG +V I+ G E  GL     
Sbjct: 165 HLKETTHTRVIGT----------MLD--EKALPIQQCDFSG-SVVIVMGAEDTGLRPITQ 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +  +  +  P+     SLN+S A  + ++E       
Sbjct: 212 SQCDQTVFIPMAGDLQSLNVSVATGMALYEACRQRTT 248


>gi|167855878|ref|ZP_02478628.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219872061|ref|YP_002476436.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|167852966|gb|EDS24230.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219692265|gb|ACL33488.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 159

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 21/171 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L ++ P    W  +K R S        + V +  
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRS---GLDYHEFVDIQK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +  + +             R   K + A        +  +       ++FG E  G+ 
Sbjct: 60  YKDFDDFLE------------RAKPKRLFALTTKGEPNHSDVQYELGDFLMFGPESRGIP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
              +     +  I  P+     S+N+S +V ++V+E        +    +E
Sbjct: 108 KAILDSLPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVPRQE 158


>gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis MSMB43]
          Length = 247

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASLYDTKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRRAKQ 247


>gi|34557814|ref|NP_907629.1| putative RNA methylase [Wolinella succinogenes DSM 1740]
 gi|34483532|emb|CAE10529.1| PUTATIVE RNA METHYLASE [Wolinella succinogenes]
          Length = 153

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+LV+P++ +N G + R       + L L++P     S+K    +       + + ++  
Sbjct: 5   IVLVEPRIPQNTGNIGRLCAAT-QSALHLIHPLGFTLSQKEIKRA--GMDYWEHLELYEW 61

Query: 76  -NLK---EA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +L+   EA    + HF+  TT   R  F++ L P                  + FGRE 
Sbjct: 62  SSLEAFTEAHPFGESHFLL-TTKAKRAYFEASLPPSAY---------------LYFGRED 105

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL    + A   A++  P+     SLN++ A  ++++E +  
Sbjct: 106 AGLPQVLLEAHPQAMLKIPMKEGNRSLNLATATGIVLYEAIRQ 148


>gi|311064540|ref|YP_003971265.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
 gi|310866859|gb|ADP36228.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
          Length = 289

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 28/156 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSV 71
           +   N G V RA        +  V+      + K   ++A +           D      
Sbjct: 137 RGPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFGWA 196

Query: 72  --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V   +    AD   +Y T  R          P+E    L ++  SG    +IFG E 
Sbjct: 197 GEKVLRTVA---AD---VYGTDGRE---------PRELPEALRDQDLSGVGKAVIFGNEA 241

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            GL    +   + I+  P+     SLN++ +  +M+
Sbjct: 242 RGLEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus
           DSM 2366]
          Length = 254

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V+IL       N+G +AR      +  + + +      +  A  +SA A   I   R
Sbjct: 105 TPLVLILDGITDVRNMGAIARTAACAGVHAIVVPSKNSAQINADAIKTSAGALFTIPVCR 164

Query: 73  VFSNLKE---AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              NL +    + +    I A T +  +    +  P   A              I+ G E
Sbjct: 165 -HPNLHKTALFLQECGLQIVACTEKTNDL---IYVPDYTAP-----------TAIVMGAE 209

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G++NE + ++N +   P+     SLN+S +  ++++E +   
Sbjct: 210 DEGISNELMRMANHLAKIPMIGEISSLNVSVSAGIILYEAIRQR 253


>gi|170718519|ref|YP_001783729.1| RNA methyltransferase [Haemophilus somnus 2336]
 gi|168826648|gb|ACA32019.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus somnus
           2336]
          Length = 161

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +  ++  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAQIKK 59

Query: 74  FSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                E +     + ++A T   +          E    L            +FG E  G
Sbjct: 60  HKTFNEFLNTEQPNRLFALT--TKGTPAHSQVNFELGDYL------------MFGPETRG 105

Query: 132 -----LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                L N  +  +  I   P+     S+N+S AV + V+E    
Sbjct: 106 IPMPILDN--LPTTQKI-RIPMIENSRSMNLSNAVAVTVYEAWRQ 147


>gi|312170608|emb|CBX78871.1| putative RNA methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 231

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP  + R+   SA        V+   ++ +A+ 
Sbjct: 30  PHNVSAVIRTADAVGVHEVHAV-----WPGSRMRTMVSSAAGSNSWVQVKTHRSIADAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  + +N         + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 84  -------TCLKGQNMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITREALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +E     ++ + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYMREESTLEYSEQQRLLF 188


>gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
           DSM 6724]
 gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
           DSM 6724]
          Length = 239

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 11/159 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  +++L   Q   N+G +AR      ++ + +   R    +  +  +SA A   I  +R
Sbjct: 91  KSIIVVLDHIQDPYNLGAIARTSEFAGVSAIVIPKARSAGITSVSFKTSAGALSYIPVIR 150

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V SN+   + +L          +     ++        L  ++     + ++ G E  GL
Sbjct: 151 V-SNIANFLREL----------KGKGWFIVGADLNTENLYNKVEYNFPLALVVGSEGEGL 199

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                   + ++  P      SLN+S AV +++++  E+
Sbjct: 200 HRIVRESCDLLVKIPSYGKVESLNVSVAVGIILYKIRES 238


>gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
 gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
          Length = 250

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEELSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150

Query: 62  ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +    + +NL E   IA L              K  L      +    + F   
Sbjct: 151 MGAQFSLKFSYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLA 198

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           N  ++FG E  G+ +  +         P      SLN++QA  + ++E +   +
Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 247

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 17/161 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R+     +  + +   +    +  AR  +  A   +  ++V +  
Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLA 159

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      ++  T               E    + +   +G  + I+ G E  G+  
Sbjct: 160 RTLREIKDAGVWVVGTAG-------------ETDTHVFDASLTG-PMAIVMGAEGEGMRR 205

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                 + ++  P+     SLN+S A  + ++E +     +
Sbjct: 206 LTREHCDVLVKIPMAGSVSSLNVSVATGICLFEVLRQRNAN 246


>gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
 gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
          Length = 191

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 75/177 (42%), Gaps = 9/177 (5%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P  ++L D +   N+G V R+   F +  + L       P+ +   ++   
Sbjct: 15  EEFKEADKLPLTVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGG 74

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNE---RIFS 117
           +  +   R F++ +EA+ +LH    F+Y+      +     L P+  A+   E       
Sbjct: 75  EDSVAW-RYFAHTEEAVEELHRRGVFVYSVEQVEGSTKLQDLTPRLPAVSREEGENSPAG 133

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            ++  +I G E  G+    + +S+  +  P      SLN+S    +++WE     ++
Sbjct: 134 DRHYALILGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFARRLLL 190


>gi|240850138|ref|YP_002971531.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267261|gb|ACS50849.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 158

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R    F L  + ++ P     S++    +      ++      +
Sbjct: 5   IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRA--GLDYLEYA----S 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  I   HFI    +  ++  + +L     A     +I   +N  ++FGRE  G+ +  
Sbjct: 58  LERHIDWQHFI----SSMKHFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRETAGVPDYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++  +  P+ P   SLN++  V +   E +  
Sbjct: 114 HEAADYTLKIPMQPQARSLNLAMCVAITTGEALRQ 148


>gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 261

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 10/170 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   +   N+G + R+     +  + +   R    +  A  +SA A   +   RV +
Sbjct: 95  VVVLDGIEDPHNLGALIRSADGAGVDGVVIPERRAVGVTGTAMKASAGAAEYVPIARV-T 153

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  +I DL        +++ N  +V    E      + I    ++ ++ G E  GL + 
Sbjct: 154 NIARSIEDL--------KDKYNVWTV-GLDERGTQNYDEIDYNMSLALVLGAEGKGLHDL 204

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
                + ++  P+     SLN+S A  ++++E                 T
Sbjct: 205 VRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSRQRRAKVAGAGSPGTT 254


>gi|259906722|ref|YP_002647078.1| tRNA guanosine-2'-O-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224962344|emb|CAX53799.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283476505|emb|CAY72320.1| putative RNA methylase [Erwinia pyrifoliae DSM 12163]
 gi|310765945|gb|ADP10895.1| tRNA guanosine-2'-O-methyltransferase [Erwinia sp. Ejp617]
          Length = 231

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP  + R+   +A        V+   ++ EA+A
Sbjct: 30  PHNVSAVIRTADAVGVHEVHAV-----WPGSRMRTMVSAAAGSNSWVQVKTHRSIAEAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     + +N         + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  --------CLKGQNMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITREALDLADG 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +E     ++ + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLREESTLEYSEQQRLLF 188


>gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2]
          Length = 156

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC----VIDSVR 72
           I L +P++  N G + R   N    QL L+ P  G+  E+ +   A  D      +   R
Sbjct: 4   IALFEPEIPPNTGNIIRLAANTG-AQLHLIEPL-GFSLEEKKLRRAGLDYSEFAALQVHR 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            FS  +E++        TT  +R +              ++  F   +V ++FG E  GL
Sbjct: 62  DFSAFQESVVGQRLFAMTTKGSRPH--------------SQACFQDGDV-LLFGPETRGL 106

Query: 133 TNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + +    +   +  P+     SLN+S AV + ++E    
Sbjct: 107 PEQILDSLPATQRLRLPMVAESRSLNLSNAVAVTLYEAWRQ 147


>gi|332184301|gb|AEE26555.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida
           3523]
          Length = 155

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 22/155 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I L +P++  N G + R   N    +L L+ P      +K    +       +    +++
Sbjct: 4   IALYEPEIPPNTGNIIRLCANVG-AKLHLIEPLGFELEDKQLRRA--GLDYHEFADLKIY 60

Query: 75  SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N  E     +   I+A T + +  +  V    +                ++FG E  GL
Sbjct: 61  KNFAEFYQKNEDKKIWACTTKAKQYYHQVDFSCDD--------------ILLFGPETRGL 106

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
             + + L     +  P+     SLN+S +V ++++
Sbjct: 107 PVDVLELLKQTQLKIPMYKNSRSLNLSNSVAVILY 141


>gi|145632119|ref|ZP_01787854.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 3655]
 gi|148827956|ref|YP_001292709.1| putative RNA methyltransferase [Haemophilus influenzae PittGG]
 gi|144987026|gb|EDJ93556.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 3655]
 gi|148719198|gb|ABR00326.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittGG]
          Length = 160

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +         + + +  F   L  K +      +   G    ++FG E  G+  
Sbjct: 61  KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 305]
 gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 305]
          Length = 260

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 100 ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 157

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 158 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 202

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 203 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 260


>gi|91776534|ref|YP_546290.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus
           KT]
 gi|91710521|gb|ABE50449.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus
           KT]
          Length = 154

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L  P++  N G + R   N N T+L LV P      +K    +       +     V 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANSN-TRLHLVKPLGFELEDKQLKRA--GLDYHEYASLVVH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +   +A+A       TT  +  +      P                   +FG E  G
Sbjct: 61  EDWEACKQALAGRRTFALTTKGSTRHSDIRFLP---------------GNVFVFGPETRG 105

Query: 132 LTNEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E  A  +    I  P+ P   SLN+S +  ++++E    
Sbjct: 106 LPEEIRAEFSPEYRIRLPMMPQSRSLNLSNSAAILLYEAWRQ 147


>gi|87124502|ref|ZP_01080351.1| putative tRNA/rRNA methyltransferase (SpoU family protein)
           [Synechococcus sp. RS9917]
 gi|86168074|gb|EAQ69332.1| putative tRNA/rRNA methyltransferase (SpoU family protein)
           [Synechococcus sp. RS9917]
          Length = 161

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 24/165 (14%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A    I L +PQ+  N G +AR    F L  L L+ P      ++    +         
Sbjct: 7   TAAPLRIALYEPQIPPNTGNIARTSAAFQLP-LALIEPLGFSLEDRYLKRA--GLDYWPH 63

Query: 71  VRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V++          EA+     +   +         +    E   VL            +F
Sbjct: 64  VQLSSHSDVDAFLEALPTPFRLIGCSRHGGTALPQMRF--EPGDVL------------LF 109

Query: 126 GRERWGLTNEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWEC 168
           GRE  GL        + + + P+       SLN+S A  L+ ++ 
Sbjct: 110 GREDLGLPESVRRRCDQLCTIPMPGGAAVRSLNLSVAAALVSFQA 154


>gi|68249362|ref|YP_248474.1| putative RNA methyltransferase [Haemophilus influenzae 86-028NP]
 gi|145638435|ref|ZP_01794045.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittII]
 gi|319897735|ref|YP_004135932.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|329122776|ref|ZP_08251348.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|68057561|gb|AAX87814.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 86-028NP]
 gi|145272764|gb|EDK12671.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittII]
 gi|309751573|gb|ADO81557.1| Putative RNA methylase [Haemophilus influenzae R2866]
 gi|309973738|gb|ADO96939.1| Putative RNA methylase [Haemophilus influenzae R2846]
 gi|317433241|emb|CBY81616.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|327472040|gb|EGF17478.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 160

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +         + + +  F   L  K +      +   G    ++FG E  G+  
Sbjct: 61  KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|319775295|ref|YP_004137783.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
 gi|317449886|emb|CBY86097.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
          Length = 160

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +         + + +  F   L  K +      +   G    ++FG E  G+  
Sbjct: 61  KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLSYEGAVNLPE 158


>gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
 gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
          Length = 245

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 21/169 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID 69
            A    + L       N+G V R+   F    + L  P    P   KA  +S  A   + 
Sbjct: 93  PAGPLCVYLHGIADPGNVGTVLRSALAFGAASVAL-GPGCADPFGPKAVRASMGAVFQVP 151

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R   ++  A+          A +      +                G+   ++ G ER
Sbjct: 152 LARASGDVA-ALPGTTIALDAHAGSGPLHGPL----------------GEPATLLIGAER 194

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            GL    +   +     P+     SLN + A  + ++E          +
Sbjct: 195 AGLPEALLEACDRTARIPIRSE--SLNAAMAATIALYEATRGEDAGDHR 241


>gi|170766883|ref|ZP_02901336.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
           TW07627]
 gi|170124321|gb|EDS93252.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
           TW07627]
          Length = 229

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS--ANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ +  A        V+    + +A+A
Sbjct: 30  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASTAAGSNSWVQVKTHRTIGDAVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + R          + A+   E I       I+ G+E+ G+T E + L++ 
Sbjct: 85  HL--------KGRGMQILATHLSDNAVDFRE-IDYTCPTCILMGQEKTGITKEALELADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|116328938|ref|YP_798658.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330456|ref|YP_800174.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121682|gb|ABJ79725.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124145|gb|ABJ75416.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 277

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 67/157 (42%), Gaps = 12/157 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P++++   +   N+G + R         + + +P+    +     +S  A   +D   V+
Sbjct: 129 PILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPNVIRASTGALFTLD---VY 185

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                 + ++  IY    +N     +V  P+      +  +     + ++FG E++GL++
Sbjct: 186 ------LGEIETIYGILKKNHYRTLAV-TPEAKKFYFDADLK--GKIALVFGSEQYGLSS 236

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                S+  +S P+     SLN++ +  ++++E +  
Sbjct: 237 YARNHSDEYLSLPMLGEADSLNLAMSAGILMYEVIRQ 273


>gi|90422442|ref|YP_530812.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB18]
 gi|90104456|gb|ABD86493.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB18]
          Length = 162

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 25/178 (14%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +  G  I L  P + +N G + R     N+ +  ++ P     S++    +      +D 
Sbjct: 3   AQGGMRIALFQPDIPQNTGTILRLCACLNV-EAHIIEPAGFPVSDRHFRRA--GMDYLDQ 59

Query: 71  VRV-----FSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           V +     +S  ++  A A    +  TT          L  + +A  +           +
Sbjct: 60  VTIMRHDCWSKFEQWRAAAGCRLVLLTT----KGLTPYLDYRYSARDV-----------L 104

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           + GRE  G+ ++  A+++A +  PV P   SLN++ A  +++ E +  +  +SE    
Sbjct: 105 LLGRESAGVPDDVAAVADARLVIPVQPGLRSLNVAMAAAMVLGEALRQTGSNSEAPQP 162


>gi|260599907|ref|YP_003212478.1| putative rRNA methylase [Cronobacter turicensis z3032]
 gi|260219084|emb|CBA34439.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Cronobacter
           turicensis z3032]
          Length = 157

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 31/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFTWDDKRLRRAG-----LDYHE---- 53

Query: 77  LKEAIADLHFIYATTARNRNN--FKSVLAPKEAAIVLNERIFSGQNVG------IIFGRE 128
                      +    R+R+   F     P+    +  +   +   V       ++FG E
Sbjct: 54  -----------FTAVMRHRDYAAFLEAETPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE 102

Query: 129 RWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL    + +      I  P+ P   S+N+S AV ++V+E    
Sbjct: 103 TRGLPASILDVLPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
 gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
          Length = 178

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 21/174 (12%)

Query: 3   PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P A +     K PV ++L + +  +N+G   R    F + ++ L       P+ +   ++
Sbjct: 12  PSAGEFARMEKMPVAVVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTA 71

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATT-----ARNRNNFKSVLAPKEAAIVLNE-RI 115
             A+  +                 +  ATT      R +     V+   E A++L+E R 
Sbjct: 72  LGAELTVAW--------------DYFAATTDCIAALRAQGYLIYVVEQVEGAVMLDEFRP 117

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             GQ   ++FG E  G+  E +  ++  I  P      S+N+S A  +++W   
Sbjct: 118 RPGQKYALVFGNEVDGVAQEVVDAADGAIEIPQAGTKHSVNVSVAGGVVLWNFF 171


>gi|257458795|ref|ZP_05623918.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268]
 gi|257443783|gb|EEV18903.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268]
          Length = 162

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 28/168 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV PQ+  N G + R   N     L L+ P      +K    +        S+  +++
Sbjct: 4   IVLVYPQIHTNTGSIGRMCVNAGCP-LHLIKPLGFVIDDKHLRRA--GLDYWASLDLKIW 60

Query: 75  SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +  E +A        F +ATT  N+  +               +   G    +IFG E 
Sbjct: 61  ESWDEFMAANGKFKQRFFFATTKTNKLYY-------------EAKFQPGD--FLIFGSEG 105

Query: 130 WGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            GL   EI  +N    I+ P++    SLN++ +V ++ +E +  +I  
Sbjct: 106 HGLP-LEIMRTNRENCITIPMSGAGRSLNLATSVGIVTYEAIRQNIDK 152


>gi|227327134|ref|ZP_03831158.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 230

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 31/207 (14%)

Query: 1   MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++ N  +  + I ++      N+  V R      + ++        WP+ 
Sbjct: 1   MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEIH-----AIWPTS 55

Query: 56  KARSS--SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAI 109
           + ++   SA        V+   N+ +A+  L      + AT     N  +  +  +E   
Sbjct: 56  RMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLAT-----NLSEHAVDFRE--- 107

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                I   +   I+ G+E+ G+T E + L++  I  P+  +  SLN+S A  L+++E  
Sbjct: 108 -----IDYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196
               ++     + +++P  + E    L
Sbjct: 163 RQRQIAGMY--QREDSPLDEEEQQRLL 187


>gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301]
          Length = 251

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 27/163 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADC------VID 69
           IL   +   N+G   R      +    ++ P+D     +   R  +  A        V +
Sbjct: 103 ILDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAVGLNATVRKVACGAAETVPFIAVTN 160

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R    LKEA     F+  TT                A            + I+ G E 
Sbjct: 161 LARTIRELKEA---GVFVIGTT--------------MDAPSTLINTKLDGPIAIVLGAEG 203

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+        +A+++ P+     SLN+S A  + ++E     
Sbjct: 204 DGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLYEARRQR 246


>gi|311695356|gb|ADP98229.1| tRNA guanosine-2'-O-methyltransferase [marine bacterium HP15]
          Length = 245

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 29/187 (15%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       Q  N+ +  + +L D      N+  + R+   F L  + +V P++G+   
Sbjct: 1   MTPERLARIKQTLNTRQPDLSVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPKEGF--- 57

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +A   +A       +     ++ EAI         + + + +       K  A  L++R 
Sbjct: 58  RAFRKTAGGSYNWVTTHTHRSMDEAIQ--------SLKVQGH-------KLYAAQLSDRA 102

Query: 116 FSGQNV------GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              ++V       II G E  G++ +  A ++  I  P+  +  SLN+S A  +++ E  
Sbjct: 103 IDFRDVDYTLPCTIILGNEVDGVSVDAAAQADEHIVIPMMGMVESLNVSSACAIVLSEAQ 162

Query: 170 ENSIVSS 176
               ++ 
Sbjct: 163 RQRKLAG 169


>gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
           vulgare Y25]
 gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
           vulgare Y25]
          Length = 262

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 19/172 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +   A  L+++ + P ++L+       N+G + R+   F    L +V       + +  +
Sbjct: 98  LADVALSLKDNGQPPRLVLLDRVTDPHNVGAILRSSEVFGA--LAVVG-VQRHSAPETGA 154

Query: 60  SSANADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            +  A   ++        NL +A+ +L          R     +L          E+   
Sbjct: 155 LAKTASGALERQPYIRVRNLGDAMDEL----------RAMGYLLLGLDGEGEQTIEQAIE 204

Query: 118 GQN---VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G+    V I+ G E  GL  +   L + ++  P    F SLN+S A  + ++
Sbjct: 205 GRRDRPVAIVMGAEGPGLREKTRELCDHLVRIPAAGGFASLNVSNAAAVALY 256


>gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 576]
 gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           GB8 horse 4]
 gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106b]
 gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           PRL-20]
 gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei S13]
 gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710b]
 gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei S13]
 gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 576]
 gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           GB8 horse 4]
 gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106b]
 gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           PRL-20]
          Length = 260

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 100 ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 157

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 158 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 202

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 203 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 260


>gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
 gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
          Length = 176

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 11/168 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P  ++L + +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 14  STEEFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 73

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNV 121
            A+  +D  +  +N  EA+ +L        +N       +   E +I+LNE      +  
Sbjct: 74  GAEFTVDW-KYVNNTVEAVDNL--------KNEGYTVYSVEQAEGSIMLNELTLDKSRKY 124

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  
Sbjct: 125 TIVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLF 172


>gi|167755443|ref|ZP_02427570.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402]
 gi|237733671|ref|ZP_04564152.1| RNA methyltransferase [Mollicutes bacterium D7]
 gi|167704382|gb|EDS18961.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402]
 gi|229383269|gb|EEO33360.1| RNA methyltransferase [Coprobacillus sp. D7]
          Length = 169

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 22/174 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+LV P + +N G + R     N T L ++ P      +K    +   D V D ++ V+ 
Sbjct: 4   IVLVHPAIPQNTGNIMRTCVATN-TSLHIIKPMSFELDDKKMKRA-GLDYVKDLNLYVYE 61

Query: 76  NLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           N +E       + HF           +  +    +      +  +      + FG E  G
Sbjct: 62  NYEEFEQKNPGEYHFF--------TRYSHLCYTDQDFSDDKKEHY------LFFGHEHDG 107

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           +  E +    +  +  P++    SLN+S    + ++E +      +   V+ Q 
Sbjct: 108 IPKEILTKHLDRCLRIPMSDKVRSLNLSNCAAICIYEVLRQQSYPNLSKVEVQK 161


>gi|323494590|ref|ZP_08099694.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323311193|gb|EGA64353.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 227

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP+E      +SA A   +D V    +++EAI 
Sbjct: 30  PNNVSAVIRTADATGIHKIHAV-----WPNEMRTLSHTSAGARNWVD-VETHDSIEEAIT 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L        +++     V    + A+   E I   +   II G E+ G + +   L++ 
Sbjct: 84  EL--------KSQGMQVLVTNLSDTAVDFRE-IDYTKPTAIILGSEKVGASEKAKQLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +  + P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQRQAAGMYDNETSSVP 178


>gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 267

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V+     N G + R         +            K   +SA +   I + R       
Sbjct: 124 VETSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVSRASAGSLFHIPTAR-----DT 178

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            I D+        + R +   +LA         + +   +    +FG E  GL+ E +  
Sbjct: 179 NIKDVL------GKLRASNLQILATAPQGDATLDEVDLTKPTAWLFGNEAHGLSQELLDA 232

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  +S P+     SLN++ A  + ++E  +  
Sbjct: 233 ADIRVSIPLRGRAESLNLATAASICLYESAKAQ 265


>gi|241668936|ref|ZP_04756514.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877468|ref|ZP_05250178.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843489|gb|EET21903.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 155

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 22/155 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I L +P++  N G + R   N    +L L+ P      +K    +       +    +++
Sbjct: 4   IALYEPEIPPNTGNIIRLCANVG-AKLHLIEPLGFKLEDKQLRRA--GLDYHEFADLKIY 60

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N  E       + I+A T + +  +  V    +                ++FG E  GL
Sbjct: 61  KNFDEFYQKNKQNKIWACTTKAKQYYHQVNFNYDD--------------ILLFGPETRGL 106

Query: 133 TNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVW 166
             + + L     +  P++    SLN+S +V ++++
Sbjct: 107 PIDVLKLLEKTQLKIPMHKNSRSLNLSNSVAVILY 141


>gi|282599849|ref|ZP_05972117.2| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282567380|gb|EFB72915.1| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 226

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 78/180 (43%), Gaps = 27/180 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAI 81
             N+  + R+     + Q+        WP +  +   SS+A ++  +  V   S+ ++AI
Sbjct: 19  PHNVSAIVRSADAIGIHQIH-----AIWPDQHVKLSVSSAAGSNSWV-KVISHSSTEDAI 72

Query: 82  ADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           A +      + AT     N  +  +  +E        I   +   I+ G+E+ G++ + +
Sbjct: 73  AQIKAQGMQVLAT-----NLSEHAVDFRE--------IDYTRPTCIMMGQEKKGISQKAL 119

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           AL++  I  P+  +  SLN+S A  L+++E      ++   N +E +  + + +     +
Sbjct: 120 ALADQHIIIPMAGMVQSLNVSVASALIMYEAQRQRQLAGMYN-REYSLLSEQEQQEWLFE 178


>gi|315924294|ref|ZP_07920517.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622365|gb|EFV02323.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 155

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 30/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+L +P++ +N G +AR      LT+  L L+ P      +KA   +       D V V 
Sbjct: 4   IVLFEPEIPQNTGNIARTCA---LTETKLHLIEPLGFSIGDKAVKRA--GLDYWDMVDVT 58

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F    E   D      TT  N+N    V    +                I+FGRE 
Sbjct: 59  AYLDFETFLEENNDPELYLLTTHGNQNYADIVFKNDDY---------------IMFGRET 103

Query: 130 WGLTNEEIALS-NAIISFPV--NPLFPSLNISQAVLLMVWECMEN 171
            GL     A   N     P+  +P   SLN++ +V ++++E +  
Sbjct: 104 AGLPKAIHARYPNKRFRIPMKNHPHARSLNLANSVNIVLYEALRQ 148


>gi|307611358|emb|CBX01019.1| hypothetical protein LPW_27211 [Legionella pneumophila 130b]
          Length = 149

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P++  N G + R   N    QL L++P      +K    +        S+  + N
Sbjct: 4   IALYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYEN 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +       +Y  +A+ +  +  V      A  +           ++FG E  GL  
Sbjct: 63  WQTFLQSHSQRRLYCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 108

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +    + I  P+     SLN+S AV ++++E    
Sbjct: 109 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144


>gi|54295332|ref|YP_127747.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens]
 gi|53755164|emb|CAH16657.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens]
          Length = 149

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P++  N G + R   N    QL L++P      +K    +        S+  + N
Sbjct: 4   IALYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYEN 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +       +Y  +A+ +  +  V      A  +           ++FG E  GL  
Sbjct: 63  WQTFLQSHSQRRLYCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 108

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +    + I  P+     SLN+S AV ++++E    
Sbjct: 109 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144


>gi|326336522|ref|ZP_08202692.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691395|gb|EGD33364.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 181

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             +I+L + +   NIG V R    F + ++ L       P +    ++  A   +     
Sbjct: 27  PVIIVLDNVRSLNNIGSVFRTADAFRIEKIYLCGITACPPHKDIHKTALGATESVTWA-Y 85

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGL 132
             ++ + + +LH                +   E A  L++ +   G+   +IFG E  G+
Sbjct: 86  EKDILQLLKELH--------QSQVETIAIEQVEGAQSLSDFLPEKGKKYALIFGNEVEGV 137

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             E ++L    I  P      SLNIS +  +++WE 
Sbjct: 138 QQEVVSLCGKAIEIPQYGTKHSLNISVSAGIVMWEI 173


>gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei DM98]
 gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 14]
 gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 91]
 gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 9]
 gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei B7210]
 gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 7894]
 gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 112]
 gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei BCC215]
 gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 10399]
 gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1655]
 gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           FMH]
 gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           JHU]
 gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710a]
 gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           2002721280]
 gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 23344]
 gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           SAVP1]
 gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           NCTC 10229]
 gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 668]
 gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106a]
 gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           NCTC 10247]
 gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           FMH]
 gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           JHU]
 gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           2002721280]
 gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 10399]
 gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1655]
 gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710a]
          Length = 247

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 247


>gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
 gi|158434114|gb|EDP12403.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
          Length = 244

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VI+L D Q   N+G + R+ ++F    + L        S+K   S+  A   +    + +
Sbjct: 103 VILLDDVQDPGNVGTILRSAYSFGFDTVVLSKHCADVYSDKVIRSTQGALFHMQ--VIRT 160

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L + I  L                +    E A  ++  I +   V ++FG E  G++ E
Sbjct: 161 DLSQIIDQL---------KEKKIPVIGTALENASAMS-TIEAVDRVALLFGNEGNGVSKE 210

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +A  +  +   ++  F SLN++ A  + +++   
Sbjct: 211 LLAKCDETMYIEMH-AFESLNVAVAAGIAMYKFRR 244


>gi|298247217|ref|ZP_06971022.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297549876|gb|EFH83742.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 291

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 10/171 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++   P    N+G + R+        L L          +  S+S  +   + +VR+ S
Sbjct: 122 VVVFDRPASPGNLGTIIRSCDALEAHGLILTGHAVDLYDPETISASTGSFFALPTVRLPS 181

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +++  +         +A+ +     ++   E A     +        +I G E WG++
Sbjct: 182 QRDIEPWLQ--------SAKKKLGALQIIGTDEKAEQEISQHDFTVPTVLIVGNETWGMS 233

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
                L +A++  P+     SLN++ A  + ++E      ++S  +   Q 
Sbjct: 234 AAYKELCDAVVQIPLVGSASSLNVACATSICLYEVSRQRRLASRASSTSQP 284


>gi|162447356|ref|YP_001620488.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985463|gb|ABX81112.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 173

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 18/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS 75
           ++L  P++ +N G + R      +  L L+ P        K R S+ +    + +  +  
Sbjct: 4   VVLCQPEIPQNTGNIMRTCVGSGVH-LHLIKPLGFKIDDTKLRRSAVDYYDAL-NFEIHE 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +    +    ++Y     +R   K+  AP   AI          ++ ++FG E +G+ 
Sbjct: 62  DFESFQNEHPGTYLYL----SRYGRKTHSAPNYQAIK--------GDIYLVFGSESYGID 109

Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++         P N    SLN+S AV + V+E +  
Sbjct: 110 RALLSKNIENTFRIPTNDKIRSLNLSNAVAITVYEVLRQ 148


>gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 189

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 74/182 (40%), Gaps = 15/182 (8%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P+I+++D     N IG V R    F + ++ L       P +  + ++ 
Sbjct: 15  SVEEFKEARKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTAL 74

Query: 63  NADCVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQ 119
            A   +    V   L   E + + +    +           +   E A++LN  +   G+
Sbjct: 75  GATETVVWEHVEDTLDLVEKLKEDNIKVFS-----------IEQAEGAVMLNNFKPEIGE 123

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            + +IFG E  G+  + ++ S+ +I  P      SLNIS +  +++W+       +   +
Sbjct: 124 KIAVIFGNEVKGVQQKVVSASDGVIEIPQAGSKHSLNISVSTGVILWDLYSKLKAADYSS 183

Query: 180 VK 181
             
Sbjct: 184 AG 185


>gi|256831713|ref|YP_003160440.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685244|gb|ACV08137.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 186

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P ++  +P++  N G   R        +L +V P     SE     +      +  + + 
Sbjct: 34  PHLVYHEPRIPGNTGSAIRLAAVTG-ARLHVVEPLGFDLSEAKVKRAGLDYHDLAVMDIH 92

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +A+ DL     ++A T R    F  V                     ++FG E  G
Sbjct: 93  PSF-DALVDLYPDSRVFAFTTRATVPFTEVTYSPTDL--------------LVFGPEPTG 137

Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L +  +        +  P+ P   SLN++ +  + V+E    
Sbjct: 138 LDDAVLNHPRITGEVRIPMLPGLRSLNLTNSASIAVYEAWRQ 179


>gi|71662121|ref|XP_818072.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883301|gb|EAN96221.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 392

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 16/164 (9%)

Query: 16  VIILVD-PQLGENIGMVARAMWNFNLTQL-----RLVNPRDGWP--SEKARSSSANADCV 67
           V + V+ P+   N+G + RA+  F  + L     RL+      P    +A   S+    +
Sbjct: 170 VFVAVENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQAAGFSSPYVAI 229

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRN-----NFKSVLAPKEAAIVLNERIFSGQNVG 122
            D   +F  L+ A +    + A    +            L   +       R      V 
Sbjct: 230 PDITNLFEVLEGATSFEAVVVAVDMIDGATPLPLYRHPCLHALDGGARKRSRCTLPNLVV 289

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +FG E   +  E +A  ++ +  P      SLN++ AV ++++
Sbjct: 290 YLFGPEDGSIRQEVLARCHSAVFLPT---QGSLNLAAAVNVVLY 330


>gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pakistan 9]
 gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 406e]
 gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 406e]
 gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pakistan 9]
          Length = 231

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 71  ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 128

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 129 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 173

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 174 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGAKK 231


>gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
 gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
          Length = 275

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 29/158 (18%)

Query: 27  NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKE---- 79
           N+G + R  A  N       LVNP    P   +A   S      +   ++     +    
Sbjct: 134 NVGAIFRSAAALNM---DAVLVNPSCCDPLCRRAVRVSMGTVFQVPWAQIGETPADWPEK 190

Query: 80  ------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                 A+       A + R+               + +E +     + I+ G E  GL+
Sbjct: 191 GLAQLNALGFKTAAMALSDRS-------------VSIDDEALAREPKLAIVLGTEGDGLS 237

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  IA  +  +  P++    SLN++ A  +  W+  + 
Sbjct: 238 HTTIASCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275


>gi|215430536|ref|ZP_03428455.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
 gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
 gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
          Length = 260

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 25/162 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRV 73
           + V+ +   N G V R         + L    V+P +G         ++        V V
Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPCNGK-----CLRASTGSIFAIPVVV 166

Query: 74  FSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             ++  AIADL      + AT               E A+   +R+ + +    +FG E 
Sbjct: 167 APDVGAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEA 214

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL+ E  AL++  +  P++    SLN++ A  + ++E    
Sbjct: 215 HGLSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 256


>gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
           R3021]
 gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
           R3021]
          Length = 246

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R           +V P+D     +  AR  +  A 
Sbjct: 89  LSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            ++  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 EIVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + S
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246


>gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 285

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V+     N G + R         +  V       S KA  +SA +   +   R  +N+K+
Sbjct: 129 VETNDPGNAGTLIRVADAMGADAVVFVGETADPQSCKAARASAGSLFHVPVARS-TNVKD 187

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNEEI 137
            +  L          R     +LA      V  +       +    +FG E  GL  E +
Sbjct: 188 VLGQL----------RAQGMQILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELL 237

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           A ++  +S P+     SLN++ A  + ++E
Sbjct: 238 AEADLRVSIPIRGRAESLNLATAASICMYE 267


>gi|325577120|ref|ZP_08147604.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160702|gb|EGC72823.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 158

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 21/169 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +   +  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               +  +                 K + A        +  +       ++FG E  G+ 
Sbjct: 60  HKTFEAFLE------------SEKPKRLFALTTKGGPAHSEVQFELGDYLMFGPETRGIP 107

Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
              +        I  P+     S+N+S +V + V+E           N+
Sbjct: 108 MSILDKMPMEQKIRIPMTANSRSMNLSNSVAVAVYEAWRQLGYEGAVNL 156


>gi|212212123|ref|YP_002303059.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212]
 gi|212010533|gb|ACJ17914.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 152

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N   + L L++P       K    +       +   +   
Sbjct: 4   IALFEPEIPPNTGNIIRLCANAGAS-LHLIHPLGFSLDGKRLQRA--GLDYREWATIIHY 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F   K A A+ H I+A T + +  +  V                  +   +FG E  G
Sbjct: 61  DHFEAFKSAFAE-HRIFACTTKGKTIYADVHYR--------------SSDVFLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  E       +  I  P+     S+N++  V ++++E    
Sbjct: 106 LPAEIRTQFPDSQQIRIPMVTEKRSINLANTVSIILYEAWRQ 147


>gi|189464794|ref|ZP_03013579.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
           17393]
 gi|189437068|gb|EDV06053.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
           17393]
          Length = 175

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 11/167 (6%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P+ ++L + +   NIG V R    F +  + L       P  +   ++  A
Sbjct: 15  EEFKEAEKLPLMVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGA 74

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGI 123
           +  +D  +   N  EA+ +L        +        +   E +I+L+E  +   +   +
Sbjct: 75  EFTVDW-KYVDNCVEAVDNL--------KKEGYTVYSVEQAEGSIMLDELSLDRTKKYAV 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 126 VMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIWDLFK 172


>gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
           JA-3-3Ab]
          Length = 151

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 28/168 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           ++LV P++  N G +AR       T L LV+P     S++    +       + V++   
Sbjct: 5   VVLVAPEIPANTGNIARTCAAT-RTPLHLVDPLGFRLSDRYLRRA--GLDYWEHVQLHRY 61

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              S L +A  +  F +  + R +  +  V   P +                ++FG E  
Sbjct: 62  PSWSALVQAHPEARF-WCFSVRGKALYTEVAYQPGDW---------------LVFGSESR 105

Query: 131 GLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           GL  + + L     +  P++    SLN+S AV + ++E +     S++
Sbjct: 106 GL--DPMFLETYPSVRIPLSGPVRSLNLSNAVAIALFEALRQQGFSTQ 151


>gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810]
          Length = 246

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R         + ++ P+D     +  AR  +  A 
Sbjct: 89  LANKQNPLLLVLDGVTDPHNLGACLRTADAAGA--MAVIAPKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E     + S
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQRLGS 246


>gi|15841100|ref|NP_336137.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase TsnR [Mycobacterium bovis AF2122/97]
 gi|121637552|ref|YP_977775.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
 gi|215411290|ref|ZP_03420098.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426963|ref|ZP_03424882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|218753350|ref|ZP_03532146.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|219557563|ref|ZP_03536639.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|224990027|ref|YP_002644714.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           1435]
 gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
 gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260186592|ref|ZP_05764066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|260200707|ref|ZP_05768198.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|260204913|ref|ZP_05772404.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|289554581|ref|ZP_06443791.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           605]
 gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210]
 gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           4207]
 gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           R506]
 gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu002]
 gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu003]
 gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu004]
 gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu005]
 gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu006]
 gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu008]
 gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu007]
 gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu009]
 gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           V2475]
 gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis
           AF2122/97]
 gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
 gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
 gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           1435]
 gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|289439213|gb|EFD21706.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           605]
 gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu002]
 gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu003]
 gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu004]
 gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu005]
 gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu006]
 gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu007]
 gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu008]
 gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu009]
 gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148]
 gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           4207]
          Length = 260

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V+ +   N G V R         + L   R   P       ++        V V  ++
Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAG-RSVDPYNGKCLRASTGSIFAIPVVVAPDV 170

Query: 78  KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             AIADL      + AT               E A+   +R+ + +    +FG E  GL+
Sbjct: 171 GAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEAHGLS 218

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  AL++  +  P++    SLN++ A  + ++E    
Sbjct: 219 AEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 256


>gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
           Paraca]
 gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 259

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L L +        K   +SA A   +    V S+L   ++
Sbjct: 118 QDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIA-VHSDLITQLS 176

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D+                ++A +  A +    I       I+ G E  GL+ +  +L++ 
Sbjct: 177 DIQ----------KQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDLTSLADY 226

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            I  P+     SLN++    L+++E     + S
Sbjct: 227 HIRVPLLGNVESLNVAICAALILYEAQRQRLDS 259


>gi|261866832|ref|YP_003254754.1| TrmH family RNA methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412164|gb|ACX81535.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 158

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 19/168 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKKH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +                 K + A        +  +       ++FG E  G+  
Sbjct: 61  KTFEAFL------------QSEQPKRLFALTTKGTPAHSEVKFSLGDYLLFGPETRGIPM 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + +        I  P+     S+N+S +V + V+E           N+
Sbjct: 109 DILNSMPPEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYEGAVNI 156


>gi|253991816|ref|YP_003043172.1| tRNA /rRNA methyltransferase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783266|emb|CAQ86431.1| hypothetical tRNA/rRNA methyltransferase [Photorhabdus asymbiotica]
          Length = 170

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +       +   +  +
Sbjct: 12  IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRA--GLDYHEFANIKQH 68

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                 D H           +F  + A        +  +       ++FG E  GL +  
Sbjct: 69  -----HDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYV 123

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+     S+N+S +V ++V+E    
Sbjct: 124 LDNMPPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 160


>gi|260584367|ref|ZP_05852114.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260157885|gb|EEW92954.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 169

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +PQ+  N G +AR     N + L LV        +K    +       + V +   
Sbjct: 6   IVLFEPQIPANTGNIARTCAATN-SPLHLVGQLGFSTDDKHLKRA--GLDYWNDVDITYH 62

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGL 132
            +L+  +  L              + +    + A    +   +   +    IFG+E  GL
Sbjct: 63  DSLEAFMEYL------------GNRPIYLITKFANHTYDEVDLAKDEEQFFIFGKETTGL 110

Query: 133 TNEEIALSNA--IISFPVNP-LFPSLNISQAVLLMVWECMENS 172
             EE    +    +  P+N     SLN+S    ++V+E +   
Sbjct: 111 P-EEFMREHEESCLRLPMNDTHVRSLNLSNTAAIVVYEALRQQ 152


>gi|294791506|ref|ZP_06756663.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
 gi|294457977|gb|EFG26331.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
          Length = 294

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEAIA 82
             N G + R         L LV+      + K   S+A +   +  V + ++    EA  
Sbjct: 150 PGNAGTIIRVADAAGCPALILVDDCVDVTNPKVVRSTAGSLFHLPIVTLSTDDFFTEAAR 209

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A  A   +  +++  P     +++    S Q + I+FG E  GL +  I    +
Sbjct: 210 LGLPVCAADAYGTDQVEAIPLPD----LMDSLKSSSQPLCILFGNEARGLDDSLINRCQS 265

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  P+     SLN++ +  ++ +    +
Sbjct: 266 AVRIPLYGRAESLNVAMSASIIAYSLAMS 294


>gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei MSHR346]
 gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei MSHR346]
          Length = 247

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASVYDTKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLYEAVRQRGAKK 247


>gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168]
 gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168]
          Length = 244

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL   Q   N+G + R  +      L     R    +     +SA A   +   +V +
Sbjct: 96  IIILDQVQDPHNLGAIIRTAYAAGAHGLIYPRKRSADITPVVTKASAGAVNHLPLAKVSN 155

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + + + D+      T  +    +   +                 VG++ G E  G+
Sbjct: 156 INYTIAD-LKDMGLWI--TGTDVRGTRPYYSADYKGP-----------VGLVIGNEGKGM 201

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + +++ P++    SLN S A  ++++E +   
Sbjct: 202 RRLVKENCDFVVNIPMSGELGSLNASVAAGVVIFEVVRQR 241


>gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942]
 gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           7942]
          Length = 234

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 12/173 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +    PQ Q      ++I V+  Q   N+G + R         L L          K   
Sbjct: 71  IAARQPQRQPPTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLR 130

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +SA     +    + ++L + +         + + +        P+    +    +   +
Sbjct: 131 ASAGQWFRLPIA-IATDLGQTLR--------SWQQQGYQIVSTLPRATTTLWQADLT--R 179

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              ++ G E  GL+ +  A++++ ++ P      SLN++ A  L+++E     
Sbjct: 180 PTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 232


>gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 177

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 10/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q      VI+L + +   NIG V R    F + ++ L       P +  + ++  A   +
Sbjct: 19  QAEKTPIVIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAKPPHKDIQKTALGATDSV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127
               V   L   I  L        ++ +     +   E A  LN+ +I   Q   +IFG 
Sbjct: 79  AWEYVNETLP-LIEQL--------KSNSYETLAVEQAENATFLNDFKITQNQKYALIFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  G+  + +  S+ ++  P      SLNIS +  ++VW+   
Sbjct: 130 EVKGVAQDVVTASDVVLEIPQYGTKHSLNISVSAGVVVWDLWS 172


>gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
 gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
          Length = 246

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R       +   +V P+D     +  AR  +  A 
Sbjct: 89  LANKQNPLLLVLDGVTDPHNLGACLRTADAAG-SVAVIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T               E A  + +   +G  
Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG-------------EVAETIYQSKLTG-P 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + S
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246


>gi|320157693|ref|YP_004190072.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|319933005|gb|ADV87869.1| tRNA (guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 228

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  + R      L ++  V     WP+E+ ++    SA A   ++ V    ++ +A+
Sbjct: 30  PNNVSAMIRTADATGLHKVHAV-----WPTEQMKTLKNTSAGARNWVE-VDTHDSIADAV 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    +A      + ++     + V   +I   Q   II G E+ G++ +  AL++
Sbjct: 84  ---------SALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
             I  P+  +  SLN+S A  ++++E       +      E +  A
Sbjct: 135 QDIIIPMVGMVQSLNVSVACAVILYEAQRQREAAGMYQNDESSIDA 180


>gi|301631473|ref|XP_002944820.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase yibK-like
           [Xenopus (Silurana) tropicalis]
          Length = 158

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 39/179 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G + R   N     L L+ P      ++    +       +S RV   
Sbjct: 4   IVLVEPEIPPNTGNIIRLAANTGCA-LHLIEPLGFSMEDRLLRRA--GLDYHESARV--- 57

Query: 77  LKEAIADLHFIYATTARNRNNFKS--VLAPKEAAIVLNERIFSGQNVG----------II 124
                             R+      +   +     +      G              ++
Sbjct: 58  -----------------QRHADWPSFMRTARPDPARMLAMTTHGAQPVHATAFRPGDWLV 100

Query: 125 FGRERWGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           FG E  GLT    E  A S  +   P+ P   SLN+S AV + V+E    +  +     
Sbjct: 101 FGAETRGLTPALRETFAPSQRL-RLPMVPGQRSLNLSNAVAVTVFEAWRQNGFAMPDQA 158


>gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
           NRL30031/H210]
 gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
           NRL30031/H210]
          Length = 263

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 23/172 (13%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            + G  ++L   Q   N G + R+     + Q+   N      S K   +   A  ++  
Sbjct: 109 PSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCGNDSVDIWSPKVLRAGMGAHFLLS- 167

Query: 71  VRVFSNLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +FS ++     E     H I+AT    RN     +                Q    +F
Sbjct: 168 --IFSRVELSAWMETYQ--HQIWATALGGRNIGLYEMD-------------LSQTCAWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E  G++      ++A +  P+     SLN++ A  + ++E M   I +  
Sbjct: 211 GNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQA 262


>gi|148826591|ref|YP_001291344.1| putative RNA methyltransferase [Haemophilus influenzae PittEE]
 gi|148716751|gb|ABQ98961.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittEE]
          Length = 160

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  +         + + +  F   L  K +      +   G    ++FG E  G+  
Sbjct: 61  KTFEAFLE--------SEKPKRLF--ALTTKGSPAHSQVKFELGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYEGAINLPE 158


>gi|313471802|sp|C7BSD3|TRML_PHOAA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 162

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +       +   +  +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIQPLGFTWDDKRLRRA--GLDYHEFANIKQH 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                 D H           +F  + A        +  +       ++FG E  GL +  
Sbjct: 61  -----HDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYV 115

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+     S+N+S +V ++V+E    
Sbjct: 116 LDNMPPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 152


>gi|54298499|ref|YP_124868.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris]
 gi|53752284|emb|CAH13716.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris]
          Length = 149

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P++  N G + R   N    QL L++P      +K    +        S+  + N
Sbjct: 4   IALYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYEN 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +       ++  +A+ +  +  V      A  +           ++FG E  GL  
Sbjct: 63  WQTFLQSHSQRRLFCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 108

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +    + I  P+     SLN+S AV ++++E    
Sbjct: 109 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144


>gi|332524134|ref|ZP_08400364.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107473|gb|EGJ08697.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 156

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 25/170 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G V R   N    +L LV P      +K    +       +    R  
Sbjct: 4   IVLVHPEIPPNTGNVIRLAANTGC-RLHLVEPLGYSMDDKQLRRA--GLDYHEYAPVRRH 60

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++    +     D   ++A T R       +   +  A              ++FG E  
Sbjct: 61  ASWDALLESERPDPARMFAFTTRG---SHPLAEQRWQAGDW-----------LVFGAESA 106

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL  E +A    +  +  P+     SLN+S AV + V++    +  +   
Sbjct: 107 GLPAELLARFPDSQRVRLPMRAGQRSLNLSNAVAVAVFDAWRQAGYAGAA 156


>gi|319935054|ref|ZP_08009497.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319810072|gb|EFW06441.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 147

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G + R M  F    L ++ P       K   +S  A   + +++ + N +    +  
Sbjct: 4   GNMGTMMRTMLGFGYLHLVIIRPAVDIFDPKVIRASMGAIFHL-NIQYYDNFESYYQEYK 62

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
           +           +  +L           +I +     ++FG E  GL +  +    + + 
Sbjct: 63  Y--------HEFYPFML----KGAKNIHQISTNNVHSLVFGNESSGLDDTYLNYGQS-VF 109

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            P +    SLN+S A+ L ++   +      E
Sbjct: 110 IPHSETIDSLNLSMALGLTLFHFSKEQFQRKE 141


>gi|302766003|ref|XP_002966422.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
 gi|300165842|gb|EFJ32449.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
          Length = 220

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 26/156 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     NIG +AR+   F ++++ LV  +  + S  +  S+ +        R F +
Sbjct: 5   VVVHNVAKRHNIGTLARSATAFGVSEMILVG-KKDFNSFGSHGSAHHVRF-----RHFHS 58

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L EA                          +   E A+ +++  F  ++   + G E  G
Sbjct: 59  LLEARDYLKGIGCDICG-------------VEITEGAVAVHKHPFQ-RSTAFLLGNEGTG 104

Query: 132 LTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVW 166
           L+ +E+ + +     P V     SLN++ A  +++ 
Sbjct: 105 LSPKEMEICDFFTYIPQVGSGTASLNVTVAASIVLH 140


>gi|253690572|ref|YP_003019762.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757150|gb|ACT15226.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 230

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 31/207 (14%)

Query: 1   MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++ N  +  + I ++      NI  V R      + Q+        WP+ 
Sbjct: 1   MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVH-----AIWPTS 55

Query: 56  KARSS--SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAI 109
           + ++   SA        V+   N+ +A+  L      + AT     N  +  +  +E   
Sbjct: 56  RMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLAT-----NLSEHAVDFRE--- 107

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                I   +   I+ G+E+ G+T E + L++  I  P+  +  SLN+S A  L+++E  
Sbjct: 108 -----IDYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196
               ++     + +++P  + E    L
Sbjct: 163 RQRQIAGMY--QREDSPLDEEEQQRLL 187


>gi|318041386|ref|ZP_07973342.1| RNA methyltransferase [Synechococcus sp. CB0101]
          Length = 160

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 17/163 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P ++L  P++  N G VAR       T+L L+ P     S++    +         V + 
Sbjct: 2   PRLVLFQPEIPPNTGNVARTCAAT-CTELHLIEPLGFEISDRTLKRA--GLDYWPWVNLH 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +   A        A     +     +LA           +    +  ++FGRE  GL  
Sbjct: 59  RHADWA--------AFRLEQQRRGGRLLALSRHGSQPYTELTYQPDDWLLFGRETSGLPL 110

Query: 135 EEIALSNAIISFPV------NPLFPSLNISQAVLLMVWECMEN 171
           E +A ++A ++ P+           SLN++ A  ++++E +  
Sbjct: 111 EVVADADACLAIPMPGSVDHGGGVRSLNLATAAGVVLFEALRQ 153


>gi|317488634|ref|ZP_07947177.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325831627|ref|ZP_08164844.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
 gi|316912286|gb|EFV33852.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486498|gb|EGC88947.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
          Length = 279

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG V R+     +    LV P    P   +A   S      +   R+ S    A   + 
Sbjct: 136 NIGAVFRSAAALGI-DAVLVTPSCHDPLYRRAARVSMGTVFQVPWTRIGSERAWAAEGVP 194

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
            +     R+     + LA  + AI L++    G   + ++ G E  GL    IA  +  +
Sbjct: 195 LL-----RSLGFSTAALALSDEAIFLHDERLRGCDKLALVLGTEGDGLAPSTIANCDYTV 249

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
             P++    SLN++ A  +  WE  
Sbjct: 250 KIPMDHDVDSLNVAAASAVAFWELR 274


>gi|313471790|sp|Q12E50|TRML_POLSJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 164

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 35/182 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G V R   N    +L LV P      +K    +       +  +V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRA--GLDYHEYAQVL-- 58

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----------IIFG 126
                           R+ +    + + +  A  L      G              ++FG
Sbjct: 59  ----------------RHASWQALLDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFG 102

Query: 127 RERWGLT---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
            E  GL     E   ++  +   P+ P   SLN+S  V + V+E    +  +   +    
Sbjct: 103 AETRGLAPDVRESFPMAQRL-RVPMQPGQRSLNLSNTVAVTVFEAWRQNGFAGSHHPAAA 161

Query: 184 NT 185
           + 
Sbjct: 162 DQ 163


>gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           331]
          Length = 270

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
            L    + P +  IL   +   N+G   R+   F +    ++ P+D     +   R  + 
Sbjct: 108 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 165

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  +   +RV +    +     +  +I  T                 A  L + I    
Sbjct: 166 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 211

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++ I+ G E  GL        + +   P+     SLN+S A  + ++E        + 
Sbjct: 212 DIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269


>gi|219856334|ref|YP_002473456.1| hypothetical protein CKR_2991 [Clostridium kluyveri NBRC 12016]
 gi|219570058|dbj|BAH08042.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 157

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L +P++ +N G +AR       ++L L+ P      EK    +      +D  +    
Sbjct: 7   IVLFEPEIPQNTGNIARTCVLTG-SRLHLIKPLGFSLDEKHLRRAG-----LDYWKYLDL 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--- 132
            L +   +L        R R    +            +         I+FG+E  GL   
Sbjct: 61  TLYDCYEEL--------RERYKNGTFYFSTTHGKNFYQHAKFKDEDFIVFGKESCGLPDK 112

Query: 133 ---TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
              +N E       I  P+      SLN+S AV ++V+E +  
Sbjct: 113 IRDSNPE-----KNIRLPMIKTTTRSLNLSNAVAIVVYEALRQ 150


>gi|153955993|ref|YP_001396758.1| hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
 gi|146348851|gb|EDK35387.1| Hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
          Length = 155

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L +P++ +N G +AR       ++L L+ P      EK    +      +D  +    
Sbjct: 5   IVLFEPEIPQNTGNIARTCVLTG-SRLHLIKPLGFSLDEKHLRRAG-----LDYWKYLDL 58

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--- 132
            L +   +L        R R    +            +         I+FG+E  GL   
Sbjct: 59  TLYDCYEEL--------RERYKNGTFYFSTTHGKNFYQHAKFKDEDFIVFGKESCGLPDK 110

Query: 133 ---TNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
              +N E       I  P+      SLN+S AV ++V+E +  
Sbjct: 111 IRDSNPE-----KNIRLPMIKTTTRSLNLSNAVAIVVYEALRQ 148


>gi|260220117|emb|CBA27334.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 154

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 35/168 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----------NA- 64
           I+LV+P++  N G V R   N    +L LV P      +K    +            +A 
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRAGLDYHEYAELKRHAS 62

Query: 65  -DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               +D+ R   +             TT   R+ F+    P +  +  +E       V +
Sbjct: 63  WQHFLDAERPAPD--------RLFTLTTRGTRSPFEVAFQPGDWLVFGSETKGISDFVRM 114

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            F  ER              +  P+ P   SLN+S AV + V+E    
Sbjct: 115 SFSPERS-------------LRLPMRPDQRSLNLSNAVAVTVFEAWRQ 149


>gi|238760433|ref|ZP_04621571.1| Methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701328|gb|EEP93907.1| Methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 162

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +       +   +  +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIKPLGFTWDDKRLRRA--GLDYHEFADIKHH 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                 D H    +   +      + A        +  +    N  ++FG E  GL    
Sbjct: 61  -----HDYHAFLDSEKLDSAQPARLFALTTKGTPAHSAVSYQVNDYLLFGPETRGLPPTV 115

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +   I  P+     S+N+S AV ++V+E    
Sbjct: 116 LDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQ 152


>gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 258

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 63/173 (36%), Gaps = 12/173 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +    PQ Q      ++I V+  Q   N+G + R         L L          K   
Sbjct: 95  IAARQPQRQPPTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLR 154

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +SA     +    + ++L + +         + + +        P+    +    +   +
Sbjct: 155 ASAGQWFRLPIA-IATDLGQTLR--------SWQQQGYQIVSTLPRATTTLWQADLT--R 203

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              ++ G E  GL+ +  A++++ ++ P      SLN++ A  L+++E     
Sbjct: 204 PTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 256


>gi|269140796|ref|YP_003297497.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267986457|gb|ACY86286.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304560556|gb|ADM43220.1| tRNA (cytosine34-2'-O-)-methyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 156

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 37/168 (22%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N     L L+ P      +K    +       +   +   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFH-LHLIEPLGFTWDDKRLRRA--GLDYHEFASI--- 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                             R++  S     E    L      G              ++FG
Sbjct: 58  -----------------RRHHDYSAFLDGEKPTRLFALTTKGTPAHSEVTYRDGDYLLFG 100

Query: 127 RERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL +   + +  +  I   P+     S+N+S AV ++V+E    
Sbjct: 101 PETRGLPSTILDSLPAAQKI-RIPMLASSRSMNLSNAVSVVVYEAWRQ 147


>gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
 gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
          Length = 302

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 13/170 (7%)

Query: 5   APQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           AP    +A  P ++LV    Q   N+G V R+   F +  + L   R    S     ++A
Sbjct: 135 APASSPAAGPPPLLLVLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAA 194

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
               ++D  R  +NL  A+  L          ++ F    A  EA+  L E  F+G    
Sbjct: 195 GTAALLDICRT-TNLAGALGTL---------KKHGFWIYGASGEASGNLYETDFTG-PTC 243

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E+ G+        + +++ P+     SLN+S A  +M+ E     
Sbjct: 244 LVLGNEQKGIRPLLKKHCDFLLAIPLAAGVESLNVSVAAGIMLAEIRRRQ 293


>gi|284931509|gb|ADC31447.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. F]
          Length = 163

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--S 70
               ++L  PQ   N G +AR+   FN T L L++P   + +++    +       D  +
Sbjct: 3   SKINVVLYQPQDPRNAGNIARSCVGFNAT-LHLIHPFGFFITDERFKRA--GLDYWDHLN 59

Query: 71  VRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++ +++  + I     D +    T   N              I   E +   Q + ++FG
Sbjct: 60  LKQYADFDDFIKQNQIDDNLFLFTKKANNYLSN---------INFKEYLDHDQRIYLVFG 110

Query: 127 RERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +E  GL  + +    N ++  P++    S N++ +V+  ++E    
Sbjct: 111 QETNGLPEQLLNKYQNNLVKIPMHNAIRSFNLANSVICALYELSRQ 156


>gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 249

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +NL   +A
Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRAASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164

Query: 83  DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L       +  T          +L   E+A+ L +  FSG  V I+ G E  GL     
Sbjct: 165 HLKETTHVRVIGT----------MLD--ESALPLQKCDFSG-PVVIVMGAEDTGLRPITQ 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A  +  +  P++    SLN+S A  + ++E     
Sbjct: 212 AQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246


>gi|163786475|ref|ZP_02180923.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
 gi|159878335|gb|EDP72391.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
          Length = 176

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 23/172 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +++ K P+II++D     N IG V R    F + ++ L       P    R ++  + 
Sbjct: 16  EFKDAKKSPIIIILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHNDIRKTALGST 75

Query: 66  CVIDSVRVFSNLK-------EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             +D   V + L        E +       A +A   N F                    
Sbjct: 76  ETVDWEYVENTLDLVEKLKVEGVKVCSIEQAESATMLNKFLP---------------QPN 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                +FG E  G++ E + +S+ +I  P      SLNIS +  +++W+   
Sbjct: 121 TKYAFVFGNEVKGVSQEVVDISDTVIEIPQYGTKHSLNISVSAGVVIWDVFS 172


>gi|238797645|ref|ZP_04641141.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
           43969]
 gi|238718509|gb|EEQ10329.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
           43969]
          Length = 233

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WPS +  +   +A        V+   ++ +AIA
Sbjct: 30  PHNVSAIIRTADAVGIHQVH-----AIWPSTEMYTRLSAAAGSNSWVQVKTHPHITDAIA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        +++          + A+   E I   +   I+ G+E+ G++ E +AL++ 
Sbjct: 85  HL--------KSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISEEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +      +   P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSVLPLVEQQRLLF 188


>gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 176

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 14/157 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G V R    F L ++ L       P  +   ++  A+  +D      
Sbjct: 27  IVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAEESVDW----- 81

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNE-RIFSGQNVGIIFGRERWGL 132
              E I D   I     R +    +V + +  E + +LNE  +   Q + I+ G E  G+
Sbjct: 82  ---EYIEDTVHIV---DRLKEEGYTVFSIEQAEGSTMLNELELQKNQKIAIVMGNEVKGV 135

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E I  SN  I  P      S+N+S    +++W+  
Sbjct: 136 QQEVINHSNGCIEIPQYGTKHSMNVSVTTGIVIWDLF 172


>gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 256

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 25/177 (14%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           +L    + P++ +L       N+G   R      ++   +V P+D     +  AR  +  
Sbjct: 97  ELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA-VIV-PKDKSAQLTSIARKVACG 154

Query: 64  ADCVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           A   +  +RV +NL   + DL      ++  T                 A     +    
Sbjct: 155 AAETVPLIRV-TNLARTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLT 199

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            ++ ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + +
Sbjct: 200 GSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLAA 256


>gi|239907184|ref|YP_002953925.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239797050|dbj|BAH76039.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 196

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 17/160 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82
             N+  + R+   F + ++ L+     +P    + SS +A   +++VR     +L  A+ 
Sbjct: 34  PHNVSAILRSCDAFGIHRVHLLYTDTAFP-ALGKKSSGSAKKWVETVRHKDAASLAAALK 92

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              F + AT+              E A+ L +   +     II G E  G+  +     +
Sbjct: 93  GQGFRLVATSFT------------ETAVPLQKWDLT-TKTAIILGNEHSGVDEDLAPHVD 139

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             +  P+  +  SLN+S A  ++++E       +      
Sbjct: 140 GALYIPMMGMVQSLNVSVAAAVILYEGFRQLEAAGRYGAP 179


>gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 247

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 21/163 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+     +    +V P+D     +  AR  +  A   +  ++V +
Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHA-VIV-PKDKSAKLNGTARKVACGAAETVPLIQVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L+E      ++  T          V                   + I+ G E  G+
Sbjct: 158 LARTLREIKDAGVWVVGTAG---ETDNHVFD-----------ASLTGPMAIVMGAEGEGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                   + ++  P+     SLN+S A  + ++E +     +
Sbjct: 204 RRLTREHCDMLVKIPMAGTVSSLNVSVATGICLFEVLRQRNAN 246


>gi|37678424|ref|NP_933033.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus YJ016]
 gi|37197164|dbj|BAC93004.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 228

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 18/166 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  + R      L ++  V     WP+E+ ++    SA A   ++ V    ++ +A+
Sbjct: 30  PNNVSAMIRTADATGLHKVHAV-----WPTEQMKTLKNTSAGARNWVE-VDTHDSIADAV 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    +A      + ++     + V   +I   Q   II G E+ G++ +  AL++
Sbjct: 84  ---------SALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
             I  P+  +  SLN+S A  ++++E       +      E +  A
Sbjct: 135 QDIIIPMVGMVQSLNVSVACAVILYEAQRQREAAGMYQNDESSIDA 180


>gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
           pomorum DM001]
 gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
           pomorum DM001]
          Length = 318

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 15/187 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-- 58
           + P          GPV++L       NIG + R+   F    L  V  R+  P E A   
Sbjct: 144 LPPMPLDEALERPGPVLVLDQVTDPRNIGAILRSAAAFGAACLV-VQDRNA-PEETAVLA 201

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            +++ A   +  VR   NL  AI  L      T                   L+   F G
Sbjct: 202 KAASGALETVPMVREV-NLSRAIEQLQKAGCWTVGL----------DAGGTTLDGASFDG 250

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + V ++ G E  GL        + I    +     SLN+S A  + ++E M   + S+ +
Sbjct: 251 RRVALVLGAEGKGLRRLTRESCDEIAGLYMPGEMESLNVSVAAAVGLYELMRRGMPSAYQ 310

Query: 179 NVKEQNT 185
               +  
Sbjct: 311 KAAAKKP 317


>gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
 gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
          Length = 249

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +NL   +A
Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164

Query: 83  DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L       +  T          +L   E+A+ L +  FSG  V I+ G E  GL     
Sbjct: 165 HLKETTHVRVIGT----------MLD--ESALPLQKCDFSGA-VVIVMGAEDTGLRPITQ 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A  +  +  P++    SLN+S A  + ++E     
Sbjct: 212 AQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246


>gi|269217371|ref|ZP_06161225.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
 gi|269129508|gb|EEZ60593.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
          Length = 332

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 15/150 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE----AI 81
           N+G + R+     +    LV P    P   ++   S      +   R+ ++  +     +
Sbjct: 192 NVGAIFRSAAALGV-DAVLVAPTCCDPLYRRSVRVSMGTVFQVPWTRIGNDAHDWPRAGL 250

Query: 82  ADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            +LH + YAT A        +    ++  + + R+ + + + ++FG E  GLT   I   
Sbjct: 251 EELHRLGYATAA--------MALSDDSIPLDDARLAACERLALVFGTEGDGLTARTIEGC 302

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +  +  P+     SLN++ A  +  WE   
Sbjct: 303 DYTVRIPMAHHVDSLNVAAASAVAFWELCR 332


>gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
          Length = 279

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG V R+     +    LV P    P   +A   S      +   R+ S    A   + 
Sbjct: 136 NIGAVFRSAAALGI-DAVLVTPSCHDPLYRRAARVSMGTVFQVPWTRIGSERAWAAEGVP 194

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
            +     R+     + LA  + AI L+ ER+ +   + ++ G E  GL    IA  +  +
Sbjct: 195 LL-----RSLGFATAALALSDEAIYLHDERLRACDKLALVLGTEGDGLAPSTIANCDYTV 249

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
             P++    SLN++ A  +  WE  
Sbjct: 250 KIPMDHEVDSLNVAAASAVAFWELR 274


>gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
           ELB17]
 gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
           ELB17]
          Length = 266

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 28/178 (15%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L NS K P ++IL       N+G   R      + Q  +V P+D     +  AR  +  A
Sbjct: 108 LANSEKPPFLLILDGVTDPHNLGACMRTADAVGV-QAVIV-PKDKSATLTPVARKVACGA 165

Query: 65  DCVIDSVRVFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
              +  VRV +       L+E      ++  T                 A +   +    
Sbjct: 166 AETVPFVRVTNLARLLRTLQE---QGVWLVGTAG--------------EASITLHQADLT 208

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             + ++ G E  G+        + +I+ P+     SLN+S A  + ++E +       
Sbjct: 209 GPLALVMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLYEALRQRSAKG 266


>gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
           9187]
 gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
           9187]
          Length = 245

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 17/158 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R      +  L +   +    +  AR  +  A   +  ++V +  
Sbjct: 100 VLDGVTDPHNLGACLRTADAAGVHALIVPRDKSVSLTGTARKVACGAAESVPFIQVTNLA 159

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      ++  T                 A           ++ ++ G E  G+  
Sbjct: 160 RTLRELKERGVWVVGTAG--------------EATHDVFAAKLTGSLALVMGAEGDGMRR 205

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + +IS P+     SLN+S A  + ++E +   
Sbjct: 206 LTREHCDELISIPMAGAVSSLNVSVATGVCLFEAVRQR 243


>gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
 gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
          Length = 280

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 16/182 (8%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++   A+  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSVEEVCRKARRIVVIEGVVD---ATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  +  +I    +  +  E         A     ++   S+  P          + +   
Sbjct: 167 SMGSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSI--SIDNP---------ILATEPK 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + I+ G E  GL NE I  ++ ++  P+     SLN++ A  +  W+    +      + 
Sbjct: 216 LAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDTDLPPSP 275

Query: 181 KE 182
            +
Sbjct: 276 DD 277


>gi|90962111|ref|YP_536027.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|227891134|ref|ZP_04008939.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|301301375|ref|ZP_07207517.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821305|gb|ABD99944.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|227867008|gb|EEJ74429.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|300214798|gb|ADJ79214.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
           5713]
 gi|300851035|gb|EFK78777.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 170

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+L +P +  N G +AR     N   T+L L+ P      +K    +       D V++ 
Sbjct: 5   IVLFEPLMPANTGNIARTCAGTN---TELHLIEPLGFSTDDKYMKRA--GLDYWDKVKIT 59

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL   +        T   N   +  V      A    +   + +    +FG+E  GL
Sbjct: 60  YHPNLPAFLE-------TIPENGELY-IVSKFASKAYTEADYTNTEKEHYFLFGKETTGL 111

Query: 133 TNEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVK 181
              E+ +       I  P N     +LN+S    ++V+E +      + +   
Sbjct: 112 P--EMFMRQNPEKCIRIPQNDEHIRALNLSNTAAIVVYEALRQQGFPNLETTH 162


>gi|87310366|ref|ZP_01092496.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
 gi|87286865|gb|EAQ78769.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
          Length = 265

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 17/146 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSN--LKEA 80
            EN+G + RA   F      L++ R G P      R S+ +A  +     +     L + 
Sbjct: 127 PENLGSLIRAGSAFG-ADAILMDDRCGDPYSRRALRVSTGHAFKIP----IVETSNLLDQ 181

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +          AR+           E+AI L +         ++FG E +GL  +  A++
Sbjct: 182 LN--------VARSLGFQLIATVLDESAIPLKKETARHDRTALLFGNEGFGLEADLTAMA 233

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
           +  ++ P++    SLN+S A  + ++
Sbjct: 234 DRCVTIPMSRGSDSLNVSMAAGVFLY 259


>gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 281

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 21/170 (12%)

Query: 8   LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           LQ S+K P+I++ + P+   NIG + R     NL  + + NP+    +     SS     
Sbjct: 127 LQLSSKKPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVG--- 183

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVG 122
                 VF+              TT+      K        A +   +I++         
Sbjct: 184 -----CVFTT--------KIATGTTSEIIAYLKEHNIATYCAALTASKIYTTVDYTSGSA 230

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I+ G E  GL+ E ++ SN  I  P+     S+N+S A  ++++E     
Sbjct: 231 IVVGTEATGLSKEWLSNSNQNIIIPMEGQIDSMNVSVAAAVVIFEAKRQR 280


>gi|295395745|ref|ZP_06805934.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971406|gb|EFG47292.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 155

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 15/167 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              I+   P++  N G   R         L LV P     S+     +      +  V V
Sbjct: 2   PIQIVFHTPEIPGNTGNAIRLAAVTG-AHLHLVEPLGFDLSDAKLRRAGLDYHDLAHVTV 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++    +L              K V+A         + +    +  ++FG+E  GL 
Sbjct: 61  HPTIEHLWEEL------------GHKRVIAFTTHTTHTFDTVEYTSDDVLLFGKESTGLP 108

Query: 134 NE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            E  E    +  +  P+     SLN++ +  +  +E          K
Sbjct: 109 AEVAEDPHVDLAVRIPMLEGRRSLNLANSASIATYEAWRQLGYPGGK 155


>gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR51-B]
 gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR51-B]
          Length = 252

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 17/174 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  ++   +++L       N+G   R+     +T + +        +   R  +  A 
Sbjct: 89  QRVAETSTPLLLVLDGVTDPHNLGACLRSADAAGVTAVIVPKNNSADLTPAVRKVACGAA 148

Query: 66  CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  VRV      L    A+  ++  TT                A            + 
Sbjct: 149 EAVPFVRVTNLVRTLAALQAEGVWVVGTTG--------------DAEQSLYAQDFAGPIA 194

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  G+        + ++  P+     SLN+S A  + ++E +    V +
Sbjct: 195 LVMGAEGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLFEAVRQRSVGT 248


>gi|238764307|ref|ZP_04625258.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238697458|gb|EEP90224.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 231

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WP+ +  +   SA        V+  S++ EAI 
Sbjct: 30  PHNVSAIIRTADAVGIHQIH-----AIWPTPEMYTRLSSAAGSNSWVQVKTHSDITEAI- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  +++          + A+   E I   +   I+ G+E+ G++ E +A+++ 
Sbjct: 84  -------THLKSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISKEALAMADK 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++    + Q+  +   +     +
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYRRTQSVLSEDEQQRLLFE 189


>gi|254507286|ref|ZP_05119422.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
 gi|219549746|gb|EED26735.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
          Length = 227

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP+E      +SA A   +D V    ++++AI 
Sbjct: 30  PNNVSAVIRTADATGVHKVHAV-----WPNEMRTLSHTSAGARNWVD-VETHDSIEDAIN 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L        +++     V    E A+   E I   +   II G E+ G + +   L++ 
Sbjct: 84  EL--------KSQGMQVLVTNLSETAVDFRE-IDYTKPTAIILGSEKTGASEQAKQLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +    P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDNEVSAIP 178


>gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
           12145]
 gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
           12145]
          Length = 255

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 26/176 (14%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSA 62
           PQ+    + P+I IL +     N G +AR      +    +V P+ G    +  A  +SA
Sbjct: 98  PQVYEKGETPLILILDNITDVRNFGAIARTAECSGVH--AIVIPKRGAAQINPDAVKTSA 155

Query: 63  NADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            A   +   R   +L + +     + L  +  T   +   +K                  
Sbjct: 156 GALYKVPVCR-HDSLLQILRFLKDSGLQIVSCTEKTDDLIYKPDYTV------------- 201

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                +I G E  G++ E I  S+ +   P+     SLN+S +  ++++E +   +
Sbjct: 202 --PTAVIMGAEDTGISFELIRNSDYLTKIPMAGEIESLNVSVSAGIILYEAVRQRL 255


>gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493]
          Length = 270

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
            L    + P +  IL   +   N+G   R+   F +    ++ P+D     +   R  + 
Sbjct: 108 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 165

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  +   +RV +    +     +  +I  T                 A  L + I    
Sbjct: 166 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 211

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++ I+ G E  GL        + +   P+     SLN+S A  + ++E        + 
Sbjct: 212 DIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269


>gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis TXDOH]
          Length = 247

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 25/176 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASLYDTKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +    V
Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGV 245


>gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           oklahomensis EO147]
 gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           oklahomensis C6786]
          Length = 247

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASLYDTKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLYEAVRQRGAKR 247


>gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           334]
 gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           334]
 gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 270

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
            L    + P +  IL   +   N+G   R+   F +    ++ P+D     +   R  + 
Sbjct: 108 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 165

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  +   +RV +    +     +  +I  T                 A  L + I    
Sbjct: 166 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 211

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++ I+ G E  GL        + +   P+     SLN+S A  + ++E        + 
Sbjct: 212 DIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269


>gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 250

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 12/164 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG ++IL      +N+G + R    F ++ + +   R    +E    +S  A   +   +
Sbjct: 96  KGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVVKASTGAVFHLPIAK 155

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +L+  I                    +   E        I     + +I G E  G+
Sbjct: 156 V-GSLRNVIEKFKKKGG-----------WVVAIEKGGRNIAEIDFPYPIALIVGSEGKGV 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   +  ++ I + P+     SLN+S A  + +WE  +  I   
Sbjct: 204 SKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKRRIKDG 247


>gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 247

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 17/161 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R+     +  + +   R    +  AR  +  A   +  ++V +  
Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLA 159

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      ++  T               E    + +   +G  + I+ G E  G+  
Sbjct: 160 RTLREIKDAGVWVVGTAG-------------ETDNHVFDASLTG-PMAIVMGAEGEGMRR 205

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                 + ++  P+     SLN+S A  + ++E +    V+
Sbjct: 206 LTREHCDLLVKIPMAGTVSSLNVSVATGICLFEVLRQRSVN 246


>gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 160

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 32/169 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++ +N G +AR    F++T L L+ P      +K    +         V++   
Sbjct: 3   ISLFEPRIPQNTGSIARTCAAFDIT-LNLIEPLGFKLEDKYLKRA--GLDYWPLVKLKNY 59

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F+N K++  +   I A + +N    K                   ++  ++FGRE  G
Sbjct: 60  SNFNNFKDSKKN-KRIIAFSKKNGVYLKDFRF--------------HEDDILLFGREDTG 104

Query: 132 LTNEEIALSNAIISF--P----VNPL---FPSLNISQAVLLMVWECMEN 171
           L N  I  SN++IS   P     N       SLN+S A  + ++E  + 
Sbjct: 105 LPNNIINASNSLISIFMPKVALSNNDPKGVRSLNLSVACGIAIYEAYKQ 153


>gi|227113296|ref|ZP_03826952.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 230

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 83/207 (40%), Gaps = 31/207 (14%)

Query: 1   MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++ N  +  + I ++      N+  V R      + ++        WP+ 
Sbjct: 1   MTPQRYARIKEMLNCRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEVH-----AIWPTS 55

Query: 56  KARSS--SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAI 109
           + ++   SA        V+   N+ +A+  L      + AT     +  +  +  +E   
Sbjct: 56  RMKTLVSSAAGSNSWVQVKTHRNIGDAVGHLKAEGMQVLAT-----HLSEHAVDFRE--- 107

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                I   +   I+ G+E+ G+T E + L++  I  P+  +  SLN+S A  L+++E  
Sbjct: 108 -----IDYTRPTCILLGQEKTGITAEALKLADRDIIIPMTGMVQSLNVSVASALILYEAQ 162

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSFL 196
               ++     + +++P  + E    L
Sbjct: 163 RQRQIAGMY--QREDSPLDEEEQQRLL 187


>gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 242

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 18/171 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L   +   ++IL +     N+G +AR      +  + +   R    +  A  +S  A 
Sbjct: 87  PALAEKSDATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPTAVKASTGAL 146

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  VRV +    L +  A   +++ T               +    +  +  +   V 
Sbjct: 147 QHVPIVRVTNLSQTLDKLKAANFWVFGT---------------DMDGTVYSKWNTKGKVA 191

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +I G E  G+        + +I+ P+     SLN S A  ++++E   N +
Sbjct: 192 LIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEIFRNRL 242


>gi|302764152|ref|XP_002965497.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
 gi|302802440|ref|XP_002982974.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
 gi|300149127|gb|EFJ15783.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
 gi|300166311|gb|EFJ32917.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
          Length = 157

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++LV PQ+  N G  AR      L  L LV P      +     +           V+V 
Sbjct: 3   VVLVSPQIPGNTGTTARTCAAV-LAGLHLVKPLGFSIEDSKLKRA--GLDYWKYIVVKVH 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +    +           R +   K ++A  +        +       ++FG E  GL  
Sbjct: 60  ESWPHFLDYF--------RQQEGEKRLIAYTKTGKCSYLDMSYKPGDWLVFGSETDGLAP 111

Query: 135 EEIALSNAIIS------FPVNPLF-PSLNISQAVLLMVWECMEN 171
           E     +  +        P+N  F   LN+S +V + V+E +  
Sbjct: 112 EIHEECSTGVHAGGTVRIPMNDAFVRCLNLSVSVGIGVYEALRQ 155


>gi|170016981|ref|YP_001727900.1| rRNA methylase (SpoU class) [Leuconostoc citreum KM20]
 gi|169803838|gb|ACA82456.1| Predicted rRNA methylase (SpoU class) [Leuconostoc citreum KM20]
          Length = 170

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 21/163 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5   IVLFEPLMPANTGNIART--TAGTDAILHLIEPLGFELDDKHVKRA--GLDYWDHVQLVK 60

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++L + +         T   +++   V           +   S  +   +FG+E  GL 
Sbjct: 61  HASLPDFLE--------TLTEKDHLYLVSKFANMDYTQPDYAESQGDHYFLFGKETTGLP 112

Query: 134 NEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             E+ +       I  P +     SLN+S  V ++++E +   
Sbjct: 113 --EVFMRQNPEKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQ 153


>gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 249

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +NL   +A
Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164

Query: 83  DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L       +  T          +L   E+A+ + +  FSG  V I+ G E  GL     
Sbjct: 165 HLKETTHTRVIGT----------MLD--ESAMPIQKCDFSG-PVVIVMGAEDTGLRPITQ 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A  +  +  P++    SLN+S A  + ++E     
Sbjct: 212 AQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246


>gi|251791702|ref|YP_003006423.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
 gi|247540323|gb|ACT08944.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
          Length = 230

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 85/204 (41%), Gaps = 25/204 (12%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++ N+ +  + + ++      N+  V R      + Q+  V     WP+ 
Sbjct: 1   MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV-----WPTS 55

Query: 56  KARSS---SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           + ++    +A ++  +  V+    +++A+  L              + +     A  V  
Sbjct: 56  RMKTLVSTAAGSNSWV-QVKTHRTIQDAVGHLKM---------QGMQILATNLSAGAVDF 105

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   +   I+ G+E+ G++ + +AL++  I  P+  +  SLN+S A  L+++E     
Sbjct: 106 RDVDYTRPTCILLGQEKTGISADALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165

Query: 173 IVSSEKNVKEQNTPATKGELLSFL 196
            ++     + +++P  + E    +
Sbjct: 166 QLAGMY--RREDSPLDEEEQQRLM 187


>gi|197334204|ref|YP_002154872.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
 gi|197315694|gb|ACH65141.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
          Length = 229

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIAD 83
           N+  + R      + ++  V     WP+E+ +     SA A   +D V    N+++A A 
Sbjct: 32  NVSAIVRTADATGIHKIHAV-----WPTEQMQMLGHTSAGARNWVD-VETHKNIEDAFA- 84

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                  T + +          + A+   E I   +   II G E+ G++ + +A+++  
Sbjct: 85  -------TLKEQGMQILATNLSDTAVDFRE-IDYTKPTAIILGSEKTGISKKALAMADQD 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           I  P+  +  SLN+S A  L+++E      ++   N +E   P
Sbjct: 137 IIIPMVGMVQSLNVSVASALILYEAQRQRDLAGMYNREESALP 179


>gi|296110437|ref|YP_003620818.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295831968|gb|ADG39849.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 170

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 27/175 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P      +K    +       + V++  
Sbjct: 5   IVLFEPLMPANTGNIART--TAGTNAVLHLIEPLGFDLDDKHVKRA--GLDYWEHVQLVK 60

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERW 130
             +L + +  L                +    + A +   +   G+  G    +FG+E  
Sbjct: 61  HDSLPDFLDTL-----------GEQDHLYLVSKFANMDYTQPNYGETEGDHYFLFGKETT 109

Query: 131 GLTNEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVK 181
           GL   E+ +       I  P N     SLN+S  V ++++E +          + 
Sbjct: 110 GLP--EVFMRQNPEKAIRIPQNDTHIRSLNLSNTVAIVLYEALRQQAFPKLDTIH 162


>gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 250

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 23/161 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           +L   Q   N+G   R           ++ P+D     ++ A   ++ A   +  + V +
Sbjct: 101 VLDGIQDPHNLGACLRVADAVGAH--AVIAPKDRAVGLTQTAVKVASGAAETVPYITV-T 157

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL  A+ ++     ++  T                 A               + G E  G
Sbjct: 158 NLARALREMKERDIWVIGT--------------DALAKDDLYAAQWSTATAWVLGAEGDG 203

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L        + ++S P+     SLN+S A  + ++E     
Sbjct: 204 LRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLYEARRRR 244


>gi|33151545|ref|NP_872898.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33147765|gb|AAP95287.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 159

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L +P++ +N G + R   N    +L ++ P      +K    S      +D       
Sbjct: 4   IVLFEPEIPQNSGNIIRLCANCGF-RLHMIEPFGFTWDDKKLKRSG-----LDYHEFVDI 57

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +  + +A            R   K + A        + ++   Q   ++FG E  G
Sbjct: 58  QKYTHFDDFLA------------RAKPKRLFALTTKGEANHSQVQYEQGNFLMFGPESRG 105

Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     E + +S  I   P+     S+N+S  V ++V+E    
Sbjct: 106 IPTAILETLPMSQKI-RVPMCKDSRSMNLSNTVAVVVYEAWRQ 147


>gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 246

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 25/177 (14%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           +L    + P++ +L       N+G   R      ++   +V P+D     +  AR  +  
Sbjct: 87  ELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA-VIV-PKDKSAQLTSIARKVACG 144

Query: 64  ADCVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           A   +  +RV +NL   + DL      ++  T                 A     +    
Sbjct: 145 AAETVPLIRV-TNLARTLRDLQQNHNIWVVGTAG--------------EATETIYQTKLT 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            ++ ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + +
Sbjct: 190 GSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLAA 246


>gi|315633425|ref|ZP_07888716.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315477925|gb|EFU68666.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 158

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +   +  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFADIKK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               +  +                 K + A        +  +       ++FG E  G+ 
Sbjct: 60  HKTFEAFL------------QSEQPKRLFALTTKGTPAHSEVKFELGDYLMFGPETRGIP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +    +   I  P+     S+N+S +V + V+E    
Sbjct: 108 MDILNSMPAEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQ 147


>gi|332662188|ref|YP_004444976.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331002|gb|AEE48103.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 209

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 77/204 (37%), Gaps = 19/204 (9%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA---RSSSANAD 65
           QN      +IL +     N+G V R+  +  + ++ ++  R G  + K    + +SA + 
Sbjct: 14  QNRQFDLTVILENVDDPHNVGAVLRSCDSVGIREIFVLYTRPGLQNHKLELGKRTSAGSR 73

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ID V ++  +   +  +          RN  +               +   Q+  ++F
Sbjct: 74  KWID-VYLYREVDACMEHV---------RRNYQRVYATHLAHDAKSLYELDLAQSAALMF 123

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           G E  GL+   ++ ++     P   +  SLN+S A  + ++E            V     
Sbjct: 124 GNEADGLSELALSQADGNFIIPQVGMAQSLNVSVACAVSLYEAFRQRSAKGLYGVG---N 180

Query: 186 PATKGELLSFLDYL---EISLEER 206
           PA+  +  + L+     +  LEE 
Sbjct: 181 PASTDQQAALLEDYFRRQEDLEEA 204


>gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22]
 gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22]
          Length = 175

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A + +   K P V++L D +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
            A+  +D  +  +N  +A+ +L        +N       +   E +I+L+E ++   +  
Sbjct: 73  GAEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMLDELQLDKTKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AIVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172


>gi|323698127|ref|ZP_08110039.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. ND132]
 gi|323458059|gb|EGB13924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           ND132]
          Length = 153

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 24/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73
            I+L +P++  N G +AR       T L L+ P      +K    +        +V   V
Sbjct: 2   RIVLFEPEIPPNTGNIARLCAAT-RTPLHLIEPLGFSIDDKHLKRA--GLDYWPAVDLTV 58

Query: 74  FSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +    +A +     + ATT                A + + R     +  I+ G E  
Sbjct: 59  HPDFDHFLATVAPPRLVMATT---------------KARIAHHRFAFRADDAIVLGPETR 103

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL   E+   +A++  P+     SLN+S A  ++++E +  +
Sbjct: 104 GLP-MELMEGHAMVRIPIWGEVRSLNLSTATGILLFEALRQT 144


>gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
          Length = 280

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 66/182 (36%), Gaps = 16/182 (8%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++   A+  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSVEEVCRKARRIVVIEGVVD---ATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  +  +I    +  +  E         A     ++   S+  P          + +   
Sbjct: 167 SMGSVFLIPWTWLDGSPNELRKQGFRTVAMALTEKSI--SIDNP---------ILATEPK 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + I+ G E  GL NE I  ++ ++  P+     SLN++ A  +  W+    +      + 
Sbjct: 216 LAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDTDLPPSP 275

Query: 181 KE 182
            +
Sbjct: 276 DD 277


>gi|223041990|ref|ZP_03612174.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
 gi|223017247|gb|EEF15675.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
          Length = 159

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 62/174 (35%), Gaps = 27/174 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L +P++ +N G + R   N    +L ++ P      +K    S      +D       
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFTWDDKKLKRSG-----LDYHEFVDI 57

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               N  + +A            R   K + A        +  +       ++FG E  G
Sbjct: 58  QKYKNFDDFLA------------RAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRG 105

Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +     + + +S  I   P+     S+N+S +V ++V+E       ++    + 
Sbjct: 106 IPKAILDTLPMSQKI-RIPMCKDSRSMNLSNSVAVVVYEAWRQFGYANAVPRQP 158


>gi|163867933|ref|YP_001609137.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017584|emb|CAK01142.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 158

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R    F L  + ++ P     S++    +      ++      +
Sbjct: 5   IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRA--GLDYLEYA----S 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  I   HFI    +  +   + +L     A     +I   +N  ++FGRE  G+ +  
Sbjct: 58  LERHIDWQHFI----SSMKRFNRRLLLLSTKAKTCYTQICYQKNDVLLFGRESAGVPDYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++  +  P+ P   SLN++ +V +   E +  
Sbjct: 114 HESADYTLKIPMQPQSRSLNLAMSVAITTGEALRQ 148


>gi|292486540|ref|YP_003529406.1| putative RNA methylase [Erwinia amylovora CFBP1430]
 gi|292897775|ref|YP_003537144.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291197623|emb|CBJ44717.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291551953|emb|CBA18990.1| putative RNA methylase [Erwinia amylovora CFBP1430]
          Length = 231

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++        WP  + R+   +A        V+   ++ +A+ 
Sbjct: 30  PHNVSAVIRTADAVGVHEVH-----AIWPGSRMRTMVSAAAGSNSWVQVKTHRSIADAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  +  N         + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 84  -------TCLKGHNMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITREALDLADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +E     ++ + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYMREESTLEYSEQQRLLF 188


>gi|107023784|ref|YP_622111.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU
           1054]
 gi|105893973|gb|ABF77138.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU
           1054]
          Length = 168

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 23/158 (14%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFSNLKEA 80
           P++  N G V R   N     L L+ P  G+P + AR   A  D      +RV  +    
Sbjct: 21  PEIPPNTGNVIRLCANTG-AHLHLIEPL-GFPLDDARMRRAGLDYHEYAQMRVHRDWDAF 78

Query: 81  IA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +A    D   ++A T R    F       + A +  +          +FG E  GL  E 
Sbjct: 79  VAAETPDPARMFAFTTRGSGRFH------DHAFLSGDW--------FVFGSETRGLPAEL 124

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +        +  P+ P   SLN+S  V ++V+E    +
Sbjct: 125 LERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQA 162


>gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 250

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEQLSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150

Query: 62  ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +    + +NL E   IA L              K  L      +    + F   
Sbjct: 151 MGAQFSLKFGYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLA 198

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           N  ++FG E  G+ +  +         P      SLN++QA  + ++E +   +
Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           lugdunensis HKU09-01]
 gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           lugdunensis HKU09-01]
 gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 248

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VIIL   +   N+G + R      +  + +   R    ++    +S  A   I  +RV +
Sbjct: 97  VIILDGLEDPHNLGSILRTADATGVDGIIIPKRRSVALTQIVAKASTGAIQHIPVMRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + +  A   +I  T A N  +++ +               +  ++ I+ G E  G+
Sbjct: 157 LSQTIDDLKAHGFWIVGTEADNATDYRDM--------------AADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +       +  I  P+     SLN S A  LM++E         +K
Sbjct: 203 SRLVKDKCDFYIKIPMVGHVNSLNASVAAGLMMYEVYRKRHSYGDK 248


>gi|254441248|ref|ZP_05054741.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
 gi|198251326|gb|EDY75641.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
          Length = 157

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 19/161 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           +LV P++  N G + R      L +L L+ P      EKA   +         V++  + 
Sbjct: 9   VLVTPEIPYNTGAIGRTCVALEL-ELILIKPYGFSLDEKAVRRA--GQDYWKHVQLCEYD 65

Query: 76  NLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +  + D           RN  + S+   +E             +  ++FG E  GL  
Sbjct: 66  TWQGFMDD-----------RNPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPA 114

Query: 135 EEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
             +    + +   P+ NPL  SLN++     ++++ M   +
Sbjct: 115 TVLNGMDDRVFHLPMRNPLVRSLNLANVATAVIYQAMRTQL 155


>gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 251

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 12/160 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  ++L      +N+G +AR +  F    L +   R    +     SS+ A   +   +
Sbjct: 96  KGFFVVLDHITDPQNVGSIARTVEVFGGIGLLIPKDRSAPINAVVVKSSSGAIFHLKISK 155

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++ +AI     +              +   E       ++     + I+ G E  G+
Sbjct: 156 T-PSISKAIKTFKEMGG-----------WVYALEKGGKDITKVDFAYPMCIVLGSEGEGV 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   +  S+  +S P+     SLN+S A  + +WE  +N 
Sbjct: 204 SKNVLEHSDVRVSIPMKGKVTSLNVSAAGAICLWEVYKNQ 243


>gi|296108132|ref|YP_003619833.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650034|gb|ADG25881.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila
           2300/99 Alcoy]
          Length = 149

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P++  N G + R   N    QL L++P      +K    +        S+  + +
Sbjct: 4   IALYQPEIPPNTGNIIRLCANSG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYES 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +       ++  +A+ +  +  V      A  +           ++FG E  GL  
Sbjct: 63  WQTFLQSHSQRRLFCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 108

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +    + I  P+     SLN+S AV ++++E    
Sbjct: 109 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 144


>gi|148360047|ref|YP_001251254.1| TrmH family transporter RNA methyltransferase [Legionella
           pneumophila str. Corby]
 gi|148281820|gb|ABQ55908.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila
           str. Corby]
          Length = 155

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P++  N G + R   N    QL L++P      +K    +        S+  + +
Sbjct: 10  IALYQPEIPPNTGNIIRLCANSG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYES 68

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +       ++  +A+ +  +  V      A  +           ++FG E  GL  
Sbjct: 69  WQTFLQSHSQRRLFCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 114

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +    + I  P+     SLN+S AV ++++E    
Sbjct: 115 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 150


>gi|70733879|ref|YP_257519.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348178|gb|AAY95784.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
           fluorescens Pf-5]
          Length = 151

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           +IL  P++  N G V R   N     L L+ P      +K    +       +    +  
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCH-LHLIEPLGFEMDDKRLRRA--GLDYHEYATLQRH 60

Query: 75  SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++L   +  L        TT  +R        P   A          +    +FG E  G
Sbjct: 61  ADLASCLESLGHPRLFAFTTKGSR--------PFHDASF-------QEGDAFLFGPESRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + +        +  P+     SLN+S  V + V+E    
Sbjct: 106 LPADVLDALPGEQRLRLPMREGCRSLNLSNTVAVAVYEGWRQ 147


>gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
 gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
          Length = 232

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 28/229 (12%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++  + +  + + ++      N+  V R      + ++  V P       
Sbjct: 1   MTPERYARIREMLAARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEIHAVWPTTRM--- 57

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           K   SSA        V+    +++A+A +        + +          E A+     I
Sbjct: 58  KTLVSSAAGSNSWVQVKTHKTIQDAVAKM--------KAKGMQILATNLSEKAVDFRA-I 108

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +   I+ G+E+ G+T E +AL+++ I  P+  +  SLN+S A  L+++E       +
Sbjct: 109 DYTRPTCILLGQEKTGITPEALALADSDIIIPMIGMVQSLNVSVASALILYEAQRQR-EN 167

Query: 176 SEKNVKEQNTPATKGELLSFLDYLEISLEERGY--FRPVEKKKKMLDDL 222
           +    ++ +  + K +        +  L E GY     V K+KK+    
Sbjct: 168 AGMYRRDSSLLSEKEQ--------QRLLFEGGYPVLSNVAKRKKLPRPF 208


>gi|313140417|ref|ZP_07802610.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132927|gb|EFR50544.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 289

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 28/154 (18%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSV-- 71
             N G V RA        +  V+      + K   ++A +           D        
Sbjct: 139 PGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFGWAGE 198

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V   +    AD   +Y T  R          P+E    L ++  SG    +IFG E  G
Sbjct: 199 KVLRTVA---AD---VYGTDGRE---------PRELPEALRDQDLSGVGKAVIFGNEARG 243

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           L    +   + I+  P+     SLN++ +  +M+
Sbjct: 244 LEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           U112]
 gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112]
 gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
          Length = 250

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEELSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150

Query: 62  ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +    + +NL E   IA L              K  L      +    + F   
Sbjct: 151 MGAQFSLKFGYI-TNLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLA 198

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           N  ++FG E  G+ +  +         P      SLN++QA  + ++E +   +
Sbjct: 199 NSILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|15924845|ref|NP_372379.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927429|ref|NP_374962.1| hypothetical protein SA1672 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283525|ref|NP_646613.1| hypothetical protein MW1796 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484097|ref|YP_041321.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49486674|ref|YP_043895.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82751510|ref|YP_417251.1| rRNA methylase-like protein [Staphylococcus aureus RF122]
 gi|156980171|ref|YP_001442430.1| hypothetical protein SAHV_1840 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315186|ref|ZP_04838399.1| hypothetical protein SauraC_03248 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732513|ref|ZP_04866678.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253735264|ref|ZP_04869429.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006643|ref|ZP_05145244.2| hypothetical protein SauraM_09240 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425967|ref|ZP_05602391.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428632|ref|ZP_05605030.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431269|ref|ZP_05607646.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433949|ref|ZP_05610307.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436865|ref|ZP_05612909.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M876]
 gi|258413723|ref|ZP_05681996.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
 gi|258423133|ref|ZP_05686027.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9635]
 gi|258438431|ref|ZP_05689715.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
 gi|258443876|ref|ZP_05692215.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
 gi|258447331|ref|ZP_05695478.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|258448186|ref|ZP_05696313.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|258453381|ref|ZP_05701364.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5937]
 gi|269203492|ref|YP_003282761.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282895154|ref|ZP_06303373.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A8117]
 gi|282904430|ref|ZP_06312318.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906253|ref|ZP_06314108.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909172|ref|ZP_06316990.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911478|ref|ZP_06319280.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914651|ref|ZP_06322437.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917125|ref|ZP_06324883.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919616|ref|ZP_06327351.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282924996|ref|ZP_06332662.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282928594|ref|ZP_06336193.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A10102]
 gi|283770939|ref|ZP_06343831.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283958608|ref|ZP_06376059.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293503722|ref|ZP_06667569.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510743|ref|ZP_06669448.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M809]
 gi|293537285|ref|ZP_06671965.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428433|ref|ZP_06821062.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276987|ref|ZP_06859494.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207427|ref|ZP_06923864.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297590600|ref|ZP_06949238.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911511|ref|ZP_07128956.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701648|dbj|BAB42941.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247627|dbj|BAB58017.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204966|dbj|BAB95661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242226|emb|CAG40933.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49245117|emb|CAG43583.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82657041|emb|CAI81478.1| rRNA methylase homolog [Staphylococcus aureus RF122]
 gi|156722306|dbj|BAF78723.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253723794|gb|EES92523.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253726671|gb|EES95400.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257271661|gb|EEV03807.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275473|gb|EEV06960.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278217|gb|EEV08865.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282042|gb|EEV12179.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284216|gb|EEV14339.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257839510|gb|EEV63981.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
 gi|257846697|gb|EEV70717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9635]
 gi|257848475|gb|EEV72466.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
 gi|257851282|gb|EEV75225.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
 gi|257853918|gb|EEV76874.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|257858425|gb|EEV81301.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|257864473|gb|EEV87218.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5937]
 gi|262075782|gb|ACY11755.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282313362|gb|EFB43758.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317426|gb|EFB47800.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282319612|gb|EFB49964.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282321832|gb|EFB52157.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325173|gb|EFB55483.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327436|gb|EFB57731.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331545|gb|EFB61059.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589803|gb|EFB94888.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A10102]
 gi|282596048|gb|EFC01012.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282762498|gb|EFC02639.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A8117]
 gi|283461086|gb|EFC08176.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283471126|emb|CAQ50337.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790757|gb|EFC29574.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|285817535|gb|ADC38022.1| tRNA (cytosine34-2-O-)-methyltransferase [Staphylococcus aureus
           04-02981]
 gi|290920130|gb|EFD97198.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095388|gb|EFE25653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466634|gb|EFF09155.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127833|gb|EFG57470.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887890|gb|EFH26786.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297575486|gb|EFH94202.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|298695124|gb|ADI98346.1| rRNA methylase -like protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300887143|gb|EFK82343.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312437680|gb|ADQ76751.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830227|emb|CBX35069.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315195767|gb|EFU26154.1| hypothetical protein CGSSa00_08920 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323438849|gb|EGA96586.1| rRNA methylase-like protein [Staphylococcus aureus O11]
 gi|323441693|gb|EGA99338.1| rRNA methylase-like protein [Staphylococcus aureus O46]
 gi|329732977|gb|EGG69321.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 156

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 28/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           I+L  P++  N G +AR     N   T L L+ P      +K    +       +  ++ 
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTN---THLHLIKPLGFRTDDKMLKRA--GLDYWEFVNIT 59

Query: 73  VFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +++   EA    +++       +   K+            +     ++   IFG+E 
Sbjct: 60  YHDSIEAFFEATNGEYYLL-----TKFGKKTYSD--------FDFSNHDKDFYFIFGKET 106

Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL +  +E    +  +  P++    SLN+S    L+++E +   
Sbjct: 107 TGLPDWVKEKYQ-DTALRIPMSEHIRSLNLSNTAALLIYEALRQQ 150


>gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 306

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 10/144 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F    + L+       ++KA  ++  A   +D V  F +  +   
Sbjct: 164 QDPGNLGTLTRTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRVDFVA-FDSFDD--- 219

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                 A+  R  N       P     V  ER  +     ++ G E  GL+++ +     
Sbjct: 220 -----LASAGRELNMELYAAEPSAKEDVDPERAKAVAKACLVLGTEGQGLSDDALRAC-K 273

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            ++ P++    SLN+  A  ++++
Sbjct: 274 PVAIPMSGEMESLNVGIAGGVLMY 297


>gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
 gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
          Length = 340

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G V R+        L L   R    +  A   +A A   +   RV +   +L E +
Sbjct: 78  PHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSL-EKL 136

Query: 82  ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            D  + +    A             E  + L +    G  V ++ G E  GL+       
Sbjct: 137 KDSGYRVIGLAA-------------EGDVTLMDVDLDGPLV-LVTGSEDQGLSLLTRRHC 182

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           + ++  P+  + PSLN S A  + V+E    + +           
Sbjct: 183 DQLVRIPLRGITPSLNASVATAMCVYEVARRNWMKDIHGQAPSPP 227


>gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1]
 gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1]
          Length = 260

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 14/162 (8%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSV 71
           +  V++L       N+G + R+   F   +  +   R   P   A + +++ A   +   
Sbjct: 110 RSVVVLLDRVSDPHNVGAILRSAEVFG-ARAVIAPARHSAPETGALAKTASGALERMPYA 168

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRER 129
           R+  NL +A+          A   + F  V   +E A  ++         N+ ++ G E 
Sbjct: 169 RI-GNLGDAME---------ALKADGFWMVGLAEEGAAPIDAVAARHTDSNIALVLGAEG 218

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL      L + +   P    F SLN+S A  + ++   + 
Sbjct: 219 PGLRERTRGLCDELAKIPFARDFGSLNVSNAAAVALYALTKG 260


>gi|258404224|ref|YP_003196966.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
           retbaense DSM 5692]
 gi|257796451|gb|ACV67388.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
           retbaense DSM 5692]
          Length = 244

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             + ++    +I L   Q   NIG +AR +++     L L   R       A  +S+ A 
Sbjct: 87  ETVADAPLPLLIALDQVQDPGNIGTLARTLYSLGGAGLVLPKNRSAPLGGGALKASSGAL 146

Query: 66  CVIDSVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   +V +    L++A      +  T           L P     +   +        
Sbjct: 147 NYLPVAQVTNLGRFLEQATQAALPVIGT----------GLTPD---SLSVYKARLSTPAV 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+          ++S P+   F SLN++QA  +++ E +   
Sbjct: 194 LVLGNEHKGMRPGVAKKCETVVSIPLQRQFDSLNVAQAGAILISEFLRQR 243


>gi|224283268|ref|ZP_03646590.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 279

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 28/154 (18%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSV-- 71
             N G V RA        +  V+      + K   ++A +           D        
Sbjct: 129 PGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMGVDEFFGWAGE 188

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V   +    AD   +Y T  R          P+E    L ++  SG    +IFG E  G
Sbjct: 189 KVLRTVA---AD---VYGTDGRE---------PRELPEALRDQDLSGVGKAVIFGNEARG 233

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           L    +   + I+  P+     SLN++ +  +M+
Sbjct: 234 LEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 267


>gi|171060485|ref|YP_001792834.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170777930|gb|ACB36069.1| RNA methyltransferase, TrmH family, group 2 [Leptothrix cholodnii
           SP-6]
          Length = 156

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 27/171 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
            I+LV P++  N G V R   N    +L L+ P      ++    +       +   V  
Sbjct: 3   RIVLVHPEIPPNTGNVIRLAANTGC-ELHLIEPLGFSMDDRLLRRA--GLDYHEYAPVRR 59

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                + L +   D   +YA T R   +   V+ P               +  ++FG E 
Sbjct: 60  HAGWAAFLADQRPDPATLYAFTTRGSRSLAEVVWP--------------ADAWLVFGCET 105

Query: 130 WGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            GL     E+IA +   +  P+     SLN+S AV + V++       +  
Sbjct: 106 SGLPEDVREQIAPAQR-VRLPMRAGQRSLNLSNAVAVAVFDAWRQQGYAGA 155


>gi|308177906|ref|YP_003917312.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745369|emb|CBT76341.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 153

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 21/167 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+   P++  N G   R        +L LV P  G+  E A    A  D   +  V V 
Sbjct: 3   RIVFNAPEIPGNSGNAIRLAAITG-AELHLVKPL-GFNFEDANLRRAGLDYHDLAYVTVH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +L  A   L    ++A T+                  +   I    +  ++FGRE  GL
Sbjct: 61  EDLDAAFEALGEGRVFAFTS--------------EGSTVYSDISYETSDILLFGRESVGL 106

Query: 133 TNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++EE        ++  P+ P   S+N++    ++ +E       +  
Sbjct: 107 SSEEKKHPRVTDLVRLPMLPGRRSMNLANTASVVAFEAWRQHGFAGA 153


>gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
           segnis ATCC 33393]
 gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
           segnis ATCC 33393]
          Length = 245

 Score = 67.0 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 14/158 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      ++   +V P+D     +  AR  +  A   +  +RV +
Sbjct: 99  VLDGVTDPHNLGACLRTADAAGVSA-VIV-PKDKSAQLNSTARKVACGAAENVPLIRV-T 155

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL   + DL          R+N   V    EA   L +   +G  + ++ G E  G+   
Sbjct: 156 NLARTLRDLQ--------ERHNVWVVGTAGEATETLYQTKLTGA-LALVMGAEGEGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                + +IS P+     SLN+S A  + ++E +   +
Sbjct: 207 TREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRL 244


>gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           lentocellum DSM 5427]
 gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           lentocellum DSM 5427]
          Length = 297

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 18/166 (10%)

Query: 11  SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +   P  +L+  + Q   N+G + R      +  + +   R    +     +SA A   +
Sbjct: 143 AKGEPAFVLILENIQDPHNLGAIIRTAHTAGVHGIIIPKRRAVGLTGTVAKASAGA---L 199

Query: 69  DSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +  +V   SN+ + I DL          +       A      VL E   +G  +GI+ G
Sbjct: 200 EHTKVAKVSNIAQTIKDLQ---------QKGLWIACA-DMDGKVLFEENLTG-PIGIVVG 248

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G++       + ++S P+     SLN S A  LMV+E +   
Sbjct: 249 SEGEGISKLTKQTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQR 294


>gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624]
 gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624]
          Length = 249

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 23/155 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +NL   +A
Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164

Query: 83  DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L       +  T          +L   E+A+ + +  FSG  V I+ G E  GL     
Sbjct: 165 HLKETTHVRVIGT----------MLD--ESALPIQKCDFSG-PVVIVMGAEDTGLRPITQ 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A  +  +  P++    SLN+S A  + ++E     
Sbjct: 212 AQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246


>gi|108758130|ref|YP_630275.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108462010|gb|ABF87195.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 167

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+  A+   ++LV PQ+  N G VAR        +L LV P      ++    +      
Sbjct: 2   LEPLARPLHLVLVSPQIPPNTGNVARLCAVTGC-RLILVEPLGFSIDDRQLKRA--GLDY 58

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            D  +VF      +       A  A   +  + + + +    +   R   G +  ++FG 
Sbjct: 59  WD--KVF------LRLYPTYAAYAADYPDARRWLFSARAETSLYEARFEEGDH--LVFGS 108

Query: 128 ERWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           E  GL  E +   +   ++ P+     SLN+S +V +  +E +             Q  P
Sbjct: 109 EVSGLAPEVMEGGTGTAVTIPMLEDRRSLNLSTSVGIGTYEALRQV---RFTGAGRQAPP 165

Query: 187 AT 188
           A+
Sbjct: 166 AS 167


>gi|148268327|ref|YP_001247270.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394389|ref|YP_001317064.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|257793786|ref|ZP_05642765.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|258420770|ref|ZP_05683709.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9719]
 gi|295406162|ref|ZP_06815970.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|297244915|ref|ZP_06928792.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|147741396|gb|ABQ49694.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946841|gb|ABR52777.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JH1]
 gi|257787758|gb|EEV26098.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|257843374|gb|EEV67784.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9719]
 gi|294969159|gb|EFG45180.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|297177995|gb|EFH37243.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|315130500|gb|EFT86486.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727203|gb|EGG63659.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 156

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 28/165 (16%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           I+L  P++  N G +AR     N   T L L+ P      +K    +       +  ++ 
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTN---THLHLIKPLGFRTDDKMLKRA--GLDYWEFVNIT 59

Query: 73  VFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +++   EA    +++       +   K+            +     ++   IFG+E 
Sbjct: 60  YHDSIEAFFEATNGEYYLL-----TKFGKKTYSD--------FDFSNHDKDFYFIFGKET 106

Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL +  +E    +  +  P++    SLN+S    L+++E +   
Sbjct: 107 TGLPDWVKEKYQ-DTTLRIPMSEHIRSLNLSNTAALLIYEALRQQ 150


>gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 247

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     +I  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWIIGTS--------------DEASATLHDTRLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V I+ G E  G+        + ++S P+     SLN+S A  + ++E +       
Sbjct: 190 GPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRAKG 247


>gi|260885962|ref|ZP_05897293.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
 gi|260851105|gb|EEX70974.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
          Length = 179

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 15/169 (8%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            AP+L       V++L + +   N+G V R    F L+ + L       P  +   ++  
Sbjct: 19  EAPKLP-----LVVVLDNVRSLHNVGSVFRTADAFRLSGVCLCGITGRPPMVEIHKTALG 73

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122
           A+  +D    F +   A+           R R      +     +  L++ R+   Q   
Sbjct: 74  AEDSVDW-EYFEDPLAAVE--------ALRRRGYLIFAVEQVAGSRPLHQLRLSPDQKYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++ G E  G+T   +  S+A +  P      SLN+S +  +++WE  + 
Sbjct: 125 LVLGNEVKGVTQSVVDASDAAVEIPQYGTKHSLNVSVSAGIVLWEFAKQ 173


>gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 247

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 17/170 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   GP ++LV        N+G   R   +       ++ PRD     +  A   ++
Sbjct: 87  ELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  + V +NL  A+ +L                +    EA   L E    G  V 
Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEAPATLYETKLDG-PVA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
           DSM 14684]
 gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
           DSM 14684]
          Length = 256

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 11/163 (6%)

Query: 11  SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           + + P+I+ L + Q  +N+G +AR       T L +   R    +     +SA A   + 
Sbjct: 103 AVEHPLIVALDEIQDPQNLGAIARTAECAGATGLVIPARRSADVTPAVCKASAGAVEHLP 162

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R   NL + + D   + A       +        +          SG  V ++ G E 
Sbjct: 163 IAR-ARNLADFLGDARGVGAWVYGAEGDGGVPYTGVDY---------SGPGVVLVLGSEG 212

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL     A  +A+I+ P+     SLN+S A   +++E +   
Sbjct: 213 RGLRPRVAASCDALIALPLRGRIGSLNVSAAASALLYEIVRQR 255


>gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
 gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
          Length = 175

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A + +   K P V++L D +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
            A+  +D  +  +N  +A+ +L        +N       +   E +I+L+E  +   +  
Sbjct: 73  GAEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMLDELELDKTRKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172


>gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC
           7002]
          Length = 388

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 20/190 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +     Q +   + PV+++        N+G + R         + +   R    +     
Sbjct: 214 LPDLIEQAKAKTESPVVVIADGITDPHNLGAIIRTAEAIGAQGMIIPQRRAVGVTSTVMK 273

Query: 60  SSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            +A A       RV  NL  A+ +L     +IY T A       ++              
Sbjct: 274 VAAGALEHFPVARVV-NLSRAMEELKEAGFWIYGTAAGTSKALHNIKF------------ 320

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                +G++ G E  GL+       + +++ P+    PSLN S A  + ++E     +V 
Sbjct: 321 --EGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIALYEVYRQKLVR 378

Query: 176 SEKNVKEQNT 185
             +       
Sbjct: 379 QVQITLPDTP 388


>gi|281421671|ref|ZP_06252670.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
 gi|281404305|gb|EFB34985.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
          Length = 179

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 14/170 (8%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P +++L D +   N+G V R+   F +  + L       P+ +   ++   
Sbjct: 15  EEFKGAEKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPNVEIHKTALGG 74

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN----ERIFSGQN 120
           +  +D    F   +EA+  L        + +  F   +   E +  L           + 
Sbjct: 75  EDSVDW-EYFKTTEEAVEKL--------KQKGYFVYSIEQVEGSTKLQNLPEAHPSLSKG 125

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             +IFG E  G+    + +S+  +  P      SLN+S    ++VWE  +
Sbjct: 126 YAVIFGNEVKGVKQNIVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWEFAK 175


>gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 177

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 8/160 (5%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             +IIL D +   NIG   R    FN+ ++ L       P  +   ++  A   ID    
Sbjct: 25  PLIIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHREIHKTALGATETIDW--- 81

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                E   D++ + A          S+   +E  ++        Q   ++FG E  G+ 
Sbjct: 82  -----EYRQDINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALVFGNEVDGVD 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              I  SN II  P      SLN+S    +++WE  +  I
Sbjct: 137 QSVIDSSNYIIEIPQFGTKHSLNVSVCAGIVLWEFAKRYI 176


>gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
 gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
          Length = 260

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
           +L  +     +IL   Q   N+G + R      +     + P   +  S K   ++  A 
Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRD-VFMTPGCAFAWSAKTLRAAMGAH 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++ V      +               +      +LA    A      +     VG +F
Sbjct: 165 FHLNIVEHC-TFESV-------------HSRLQVPLLATSSHAKQAVFDVPLNAPVGWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++ E ++     ++ P      SLN++ A  + ++E +   
Sbjct: 211 GNEGAGVSEEWLSAVTTPVTIPQPGGMESLNVAAAAAICLFEAVRQR 257


>gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 217

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  +I  + Q   N+G + R    F ++ +  +N      + K   +S  +   I    
Sbjct: 68  KGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIP--- 124

Query: 73  VFSNLKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                         + ATT+    + +     V A    A  L         V  + G E
Sbjct: 125 --------------VIATTSQILLKLKRRGIKVFATHLKAQKLVHECNISDKVAFVLGNE 170

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             G++   + L +  +  P+     SLN+S A  + ++E     ++ 
Sbjct: 171 AKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIK 215


>gi|226310665|ref|YP_002770559.1| tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599]
 gi|226093613|dbj|BAH42055.1| putative tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC
           100599]
          Length = 156

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 18/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR+        L L++P      ++    +        +V V   
Sbjct: 5   IVLHEPLIPANTGNIARSCAATG-AHLHLIHPLGFSTDDRYLKRA--GLDYWHAVNVHHH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + +      HF+ A          +    +     L   +       II G+E  GL  
Sbjct: 62  ESFE------HFVEA----QGEGAGTFYFVETWGEKLYTDVAFRDGDYIILGKETTGLPE 111

Query: 135 E--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  E       I  P++    S+N+S    ++++E +  
Sbjct: 112 ELTEKYR-EQTIRIPMSGATRSVNLSNCAAIVLFEGLRQ 149


>gi|325859781|ref|ZP_08172911.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
 gi|325482707|gb|EGC85710.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
          Length = 205

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 23/194 (11%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P +++L D +   N+G V R+   F +  + L       P+ +   ++ 
Sbjct: 13  SVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYAT-----TARNRNNFKSVLA--PKEAAIVL 111
             +  +   R F   +EA+ +LH    F+Y+      + + ++    +L   P+E     
Sbjct: 73  GGEDSVAW-RYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDIHLLTSAPREMEQDC 131

Query: 112 NE----------RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
                                ++ G E  G+    + +S+  +  P      SLN+S   
Sbjct: 132 PAADTSHSILPLHPKPDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTA 191

Query: 162 LLMVWECMENSIVS 175
            +++WE     ++ 
Sbjct: 192 GIVIWEFARRLLLE 205


>gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 247

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+     +    +V P+D     +  AR  +  A   +  ++V +
Sbjct: 100 VLDGITDPHNLGACLRSADAAGVHA-VIV-PKDKSAKLNGTARKVACGAAETVPLIQVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L+E      ++  T               E    + +   +G  + I+ G E  G+
Sbjct: 158 LARTLREIKDAGVWVVGTAG-------------ETDTHVFDASLTG-PMAIVMGAEGEGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                   + ++  P+     SLN+S A  + ++E +     +
Sbjct: 204 RRLTREHCDVLVKIPMAGTVSSLNVSVATGICLFEVLRQRAET 246


>gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 216

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 66/168 (39%), Gaps = 13/168 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+  + R      +  L      D       ++ +  A   ++  R+  + +E       
Sbjct: 40  NLSAILRTCDAVGVQHLY-YTTSDNRDLRIHKTITQGAHRWVERTRI--STEE-----QR 91

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           ++    +       V   +E A+   E +   +   I+ G E+ G+++E + L++ +I  
Sbjct: 92  VFLQKKQKEGYQVVVTHLEERAVPFRE-VDYTKPTIIVMGNEKDGVSSETVELADTVIII 150

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
           P+  +  SLN+S A  L+++E       + + +  +     +K E   
Sbjct: 151 PMQGMVQSLNVSVAAALILYEAERQLAEAGKYDTPQL----SKEEREK 194


>gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           cenocepacia MC0-3]
          Length = 247

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 17/170 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   GP ++LV        N+G   R   +       ++ PRD     +  A   ++
Sbjct: 87  ELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  + V +NL  A+ +L                +    EA   L E    G  V 
Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEAPATLYETKLDG-PVA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|325963950|ref|YP_004241856.1| rRNA methylase, , group 2 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470037|gb|ADX73722.1| rRNA methylase, putative, group 2 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 155

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+   P++  N G   R        +L LV P  G+    A+   A  D   +  V V 
Sbjct: 3   RILFHAPEIPGNTGNAIRLAAITG-AELHLVEPL-GFDFSDAKLRRAGLDYHDLAVVTVH 60

Query: 75  SNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++EA   L    +YA T+                      I       ++FGRE  GL
Sbjct: 61  PGIEEAWQHLQPERVYAFTS--------------DGTASYTDISYQPGDVLMFGRESVGL 106

Query: 133 TNEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
              E+       A +  P+ P   SLN++ A  + V+E       +  K
Sbjct: 107 P-AELKTDPHVTATVRLPMLPALRSLNLANAASIAVYEAWRQQGFAGAK 154


>gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 248

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 17/168 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++  ++   V + V+     N G + R         + L        + K   +SA +  
Sbjct: 91  EILGASPRLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAGSIF 150

Query: 67  VIDSVRVFSN--LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +  V       L  A+      + ATT                  V  +          
Sbjct: 151 GVSVVEAPDTAGLVAALHGAGLTVLATT--------------LDGEVSLDDAELSGPTAW 196

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG E  GL  E  AL++A ++ P+     SLN++ A  + +++    
Sbjct: 197 LFGAEAHGLAPEVAALADARVTIPMAGSAESLNVAAAAAICLYQSARA 244


>gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 274

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 19/163 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVID 69
           +  G V+IL   Q   N+G + R       TQ L L      W + K   +   A  ++D
Sbjct: 124 TLAGDVVILDRVQDAGNVGSILRTAAAAGFTQVLALSGCAHLWSN-KVLRAGMGAHRLLD 182

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGR 127
                  L E  ++   + A TA        +LA    A      + +     V  + G 
Sbjct: 183 -------LYEGWSNQQVLSAVTA-------PLLAATADAKCDLFSLKNDLLHPVAWVMGS 228

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  G++ + +A +  I S P++P   SLN+S A  + ++E + 
Sbjct: 229 EGQGVSEDLLAQAKGI-SIPIDPRVESLNVSTAAAICLFETVR 270


>gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           1_1_14]
 gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           1_1_14]
          Length = 247

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 26/175 (14%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
           P L    K P  + L       N G +AR      +  + +  P  G    +  A  +SA
Sbjct: 88  PFLFEQGKNPFFVMLDGITDVRNFGAIARTCECAAVDAVII--PARGSVSVNADAMKTSA 145

Query: 63  NADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            A   +   R   NL+  +     +    + AT               E       +   
Sbjct: 146 GALHTLPVCR-EQNLRATLQYLKDSGFRIVAAT---------------EKGDYDYTKADY 189

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 190 TGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 253

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 12/153 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + R+        L LVN      S K   ++  A   +    V+   
Sbjct: 113 VLDGVQDPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRATMGACFRLP---VWETT 169

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            E +  L          + +   + A       ++ R        ++ G E  G++   +
Sbjct: 170 VEELEGL---------LKTSQIPLYATALREDTVDVRQADLGRAAVVIGSEGRGVSQALL 220

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             +   +  P+     SLN + A ++++WE  +
Sbjct: 221 DRAEQTVKIPMRERCESLNAASAAVVVLWEMGK 253


>gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 247

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R+   F +  + +   R    +     +SA A   I   +V SN+
Sbjct: 100 ILDEITDPHNMGAIIRSAEAFGVHGVIIPKRRSAGINATVVKASAGAVEYIKVAKV-SNI 158

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              I DL     +I  T                 A    E +     + ++ G E  G++
Sbjct: 159 NSTIRDLKEKGLWIIGT--------------DAKAEKSFEELDYDFPLALVIGSEGKGIS 204

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              +   + +I  P+     SLN S A  ++++  + 
Sbjct: 205 RLVLENCDFVIKIPMKGKINSLNASVAASILMYNILS 241


>gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 267

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 16/165 (9%)

Query: 7   QLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           ++   A+  VII  +VD     NIG + R+     +  + L +      + +A   S  +
Sbjct: 114 EVCQDARRIVIINGVVDTT---NIGAIFRSAAALGIDAVLLTHNSCDPLNRRAVRVSMGS 170

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             ++    + ++L +         A       N   +  P          + S   + II
Sbjct: 171 VFLVPWTWIDNSLSDLCGLGFRTVAMALT--ENSIPIDNP---------ILSSEPKLAII 219

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            G E  GL  E I  ++ ++  P++    SLN++ A  +  W+  
Sbjct: 220 MGTEGDGLPYEAITEADYVVRIPMSHGVDSLNVAAASAIAFWQLR 264


>gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 269

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 30/178 (16%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--- 63
           +L    +  +++L   +   N+G + R+        + L +      +  A  SS     
Sbjct: 113 ELHLPKQPLLLVLEGIEKPGNLGAILRSADGAGADAIILTDCILDLYNPNAIRSSQGLIF 172

Query: 64  ADCVIDSVRVFSNLKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           A  ++++ R      EA+AD         + AT                     +  I  
Sbjct: 173 ALPIVNADR------EALADWLQKGRYQTVAAT---------------PHTDQSHWEIDY 211

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +   + FG E  GL++  +   +  I  P+     SLN++ A  + ++E      VS
Sbjct: 212 TKPTALFFGSESDGLSDYWMNHLDQRICIPMKGRADSLNVAAAAAVCLYEARRQRQVS 269


>gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D]
 gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D]
          Length = 260

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
           +L  +     +IL   Q   N+G + R      +     + P   +  S K   ++  A 
Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRD-VFMTPGCAFAWSAKTLRAAMGAH 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++ V      +               +      +LA    A      +     VG +F
Sbjct: 165 FHLNIVEHC-TFESV-------------HSRLQVPLLATSSHAKQAVFDVPLNAPVGWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++ E ++     ++ P      SLN++ A  + ++E +   
Sbjct: 211 GNEGAGVSEEWLSAVTTPVTIPQPGGMESLNVAAAAAVCLFEAVRQR 257


>gi|240948513|ref|ZP_04752886.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240297021|gb|EER47592.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 159

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L +P++ +N G + R   N    +L ++ P      +K    S      +D       
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFTWDDKKLKRSG-----LDYHEFVDI 57

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               N  + +A            R   K + A        +  +       ++FG E  G
Sbjct: 58  QKYKNFDDFLA------------RAKPKRLFALTTKGEPNHSDVHYELGDFLMFGPESRG 105

Query: 132 LTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     + + +S  I   P+     S+N+S +V ++V+E    
Sbjct: 106 IPKAILDTLPMSQKI-RIPMCKDSRSMNLSNSVAVVVYEAWRQ 147


>gi|188533075|ref|YP_001906872.1| putative methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188028117|emb|CAO95974.1| Predicted tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 344

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F    L LV+      S  A  ++   A+ V           +AI+ 
Sbjct: 208 PHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTAEGGAEHV-----------QAISG 255

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F     A  +  +  V       I L +     + V ++ G+ER GL++  +   +  
Sbjct: 256 ESFAAGLDAFRKAGYTIVTTSSHQGIPLAKAELPAKMV-LVLGQERDGLSDSTLEQGDLS 314

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        SLN+S A  +++ E    
Sbjct: 315 VSISGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|172040800|ref|YP_001800514.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852104|emb|CAQ05080.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 269

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 19/170 (11%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             P+I + V+     N G + R    F    +            KA  +SA +   +   
Sbjct: 111 NSPLIAVPVETNEPGNAGTIIRVADAFGAGGVLFAGNTVDPQGGKAVRASAGSLFNLPVA 170

Query: 72  R------VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           R      V   L EA     F    TA + +         EAA   N  +   Q    +F
Sbjct: 171 RNTSVVEVVEKLHEA----EFQILATAADGDVNLH-----EAADPANGMLA--QPTAWLF 219

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           G E  GL +  + L++  +S P+     SLN++ A  + ++E  +  I  
Sbjct: 220 GNEAHGLGDW-LDLADIRVSIPMQGQAESLNLATAASVCLYESSKAQIAK 268


>gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC1989]
 gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC1989]
          Length = 251

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 1   MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKA 57
           +    P+++ S   P I +L       N+G   R+     + Q  +V P+D     +   
Sbjct: 88  LKSRLPKMKESGVIPFILVLDGVTDPHNLGACLRSAEAAGV-QFVIV-PKDNSASLTPTV 145

Query: 58  RSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
              +  A  V+  VRV +    L+   +   ++                    A   + +
Sbjct: 146 VKVACGAAEVLPLVRVTNLSRTLEWLQSQGVWLVGAAG--------------EAEQDHYQ 191

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +     + I+ G E  GL        +++I  P+     SLN+S A  + ++E +     
Sbjct: 192 MNLTGPLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASGICLFEALRQRSA 251


>gi|229845812|ref|ZP_04465924.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|229810816|gb|EEP46533.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 7P49H1]
          Length = 160

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                 +                 + +LA        + ++       ++FG E  G+  
Sbjct: 61  KTFAAFLE------------SEKPQRLLALTTKGSPAHSQVKFELGDYLMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
             +        I  P+     S+N+S +V + V+E           N+ E
Sbjct: 109 SILNEMPLEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNLPE 158


>gi|108799944|ref|YP_640141.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119869054|ref|YP_939006.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108770363|gb|ABG09085.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119695143|gb|ABL92216.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 248

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 13/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++  ++   V + V+     N G + R         + L        + K   +SA +  
Sbjct: 91  EVLGASPRLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAGS-- 148

Query: 67  VIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                 +F  ++ EA      + A          ++L       V  +          +F
Sbjct: 149 ------IFGVSVVEAPDTAGLVAALHGAGLTVLATMLD----GEVSLDDAELSGPTAWLF 198

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  GL  +  AL++A ++ P+     SLN++ A  + +++    
Sbjct: 199 GAEAHGLAPDVAALADARVTIPMAGSAESLNVAAAAAICLYQSARA 244


>gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
 gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
          Length = 241

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 19/174 (10%)

Query: 7   QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSA 62
           ++ ++ +  + +L+D      NI  V R+     + QL  V     WP    R    +++
Sbjct: 11  EMLDNRQPDLTVLLDQVHKTNNIAAVLRSADAVGVHQLHAV-----WPESAMRVSGNTAS 65

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   + ++R    + +AI         TA   +  + V+            I   +   
Sbjct: 66  GSQQWVKTLR-HQTVTDAI---------TALKADGMQVVVTNFSPNAKDFREIDYTKPTA 115

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I+ G E+ G+++E + L++A +  P+  +  SLN+S A  L+++E       + 
Sbjct: 116 IVLGHEKNGVSDEAVRLADAEVIIPMVGMVQSLNVSVAGALVLFEAERQRRATG 169


>gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 250

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIA 82
             N+  + R+     + ++  V     W  +    + ++  ++  +    + S++ +A+ 
Sbjct: 30  PHNVSAILRSCDAVGINRIHGV-----WDQKTKLRKGTAMGSEHWV-KTEMHSSIDDAVG 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +N    V    + ++   E I   Q   II G+ER G T E IAL++ 
Sbjct: 84  VL--------KQQNMQVLVTHLSDDSVDFRE-IDYTQPTAIILGQERHGATEEAIALADK 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
            I  P+  +  SLN+S A  L+++E      V+   +  + + 
Sbjct: 135 NIVIPMVGMVQSLNVSVAAALVLYEAQRQRDVAGMYDTLQLDE 177


>gi|325955086|ref|YP_004238746.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323437704|gb|ADX68168.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 177

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 21/179 (11%)

Query: 4   YAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + +N  K PV++ L + +   N+G V R    F + ++ L       P ++   ++ 
Sbjct: 13  STEEYKNIEKIPVVVVLDNIRSMHNVGAVFRTADAFLIEKVYLCGITATPPHKEIHKTAI 72

Query: 63  NA-----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIF 116
            A         ++     NL E +           R  N     +   E +I   E  + 
Sbjct: 73  GATESVDWEYEENAL---NLIEKL-----------RKDNYSIVCIEQVENSISFPEYEVD 118

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             +   I+ G E  G+  E I  ++  +  P +    SLN+S    +++W+  E  +  
Sbjct: 119 PSRKYAIVMGNEVDGVQQEIIDKTDVCLEIPQSGTKHSLNVSVCTGIVLWKWYEAFLQK 177


>gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis Bt4]
 gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis E264]
          Length = 247

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 25/176 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +   GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAAGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTS--------------DDATASLYDTKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +    V
Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRGV 245


>gi|54022887|ref|YP_117129.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54014395|dbj|BAD55765.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 154

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 29/169 (17%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSN 76
           +  +P++  N G   R +       L L+ P  G+   +A+   A  D   + SV V  +
Sbjct: 5   VFHEPRIPPNTGNAIRLVAGTGCA-LHLIEPL-GFDLSEAKLRRAGLDYHDLASVTVHES 62

Query: 77  LK---EAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L    EA+A    +YA TT  +         P +                ++FG E  GL
Sbjct: 63  LAAAWEALAP-ERVYAFTTQGSTRYTDIAYRPGDV---------------LLFGTEPTGL 106

Query: 133 TNEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             E +  ++  I+     P+ P   S+N+S A  + V+E          
Sbjct: 107 PAEVL--ADPHITDRLRIPMLPGRRSMNLSNAAAVTVYEAWRQQGFPGA 153


>gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
           49989]
 gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
           49989]
          Length = 297

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 12/158 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V++L   +   N+G + R      +  + +   R    +      S  A   I    
Sbjct: 147 KPLVLVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTVAKVSEGAIFSIP-CI 205

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + +NL  A+ DL          +  F  V A         E+ F G +V ++ G E  G+
Sbjct: 206 MVTNLAAALKDL---------KQRGFW-VYAADANGDSCFEQEF-GGSVALVLGNEGKGI 254

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +   +  S+  +S P+   F SLN+S A  ++++E + 
Sbjct: 255 SKLCLNESDYKVSIPMVNDFDSLNVSVAAGILMYEIVR 292


>gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus
           KT]
 gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus
           flagellatus KT]
          Length = 251

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 23/177 (12%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           L++  K P   LV    +   N+G   R      +    ++ P+D     +   R  +  
Sbjct: 91  LESDLKEPPFFLVLDGVEDPHNLGACLRVADAMGVH--AVIAPKDRAAGLNATVRKVACG 148

Query: 64  ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A   +  + V +    L+E      FI    A               A            
Sbjct: 149 AAETVPFIAVTNLARTLRELKDAGVFIVGAAA--------------EADADLPSTNLSGP 194

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + ++ G E  GL        +++IS P+     SLN+S A  + ++E     I+   
Sbjct: 195 LALVLGAEGSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLYEARRQRILQQA 251


>gi|319442925|ref|ZP_07992081.1| putative rRNA methylase, SpoU class [Corynebacterium variabile DSM
           44702]
          Length = 164

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 22/164 (13%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P +  N G   R         L L  P      ++    +      + SV +  N   A
Sbjct: 15  QPVIPGNTGNTIRQCAGTGAA-LHLAGPLGFNFDDRHLKRAGLDYHDLASVTLHENRDAA 73

Query: 81  IADL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A+L     H ++A TA               A      I       ++FG E  GL  +
Sbjct: 74  LAELADKGGHRVFAFTA--------------HADTWFTDITYEPGDVLLFGTEPTGLEQQ 119

Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            +        +  P+ P   S+N++ A  +  +E    +     
Sbjct: 120 ALDDPRVTQHVRIPMLPGRRSMNLANAAAVATYEAWRQAGFPGA 163


>gi|163753137|ref|ZP_02160261.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
 gi|161326869|gb|EDP98194.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
          Length = 176

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 14/165 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-- 66
            +     ++IL + +   NIG V R    F + ++ L       P +    ++  A    
Sbjct: 19  SSEKTSLIVILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHKDIHRTALGATDSV 78

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIF 125
           V +       L   + +L           +   + +   E A++LNE +        ++F
Sbjct: 79  VWEYCE--DTLA-LVKELQ--------ENDVKVAAIEQAENAMMLNEFQPEKQHTYALVF 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+  E ++ S+ ++  P      SLNIS +  +++W+   
Sbjct: 128 GNEVKGVQQEVVSASDYVLEIPQFGTKHSLNISVSAGVVLWDVFR 172


>gi|305667310|ref|YP_003863597.1| spoU protein [Maribacter sp. HTCC2170]
 gi|88709357|gb|EAR01590.1| spoU protein [Maribacter sp. HTCC2170]
          Length = 216

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 24/179 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F L    ++  R G   +K  +    A   +D V+   + +  I+ L 
Sbjct: 44  HNTSAVIRSCEVFGLQDAHVIENRFGKRLDKNIAM--GAQQWVD-VKRHEDTESCISHL- 99

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                  R++        P + + +LN+     +   + FG E+ GL+ E +  ++  + 
Sbjct: 100 -------RDQGYQIIATTPHDDSCLLND-FNLDKKTALFFGTEKEGLSEEVMQKADGFLK 151

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
            P+     SLNIS +  +++              +K+Q  P    ++      LE  L+
Sbjct: 152 IPMVGFTESLNISVSAAIIL--------QYLRTKLKQQELPWQLSDIEK----LEKRLD 198


>gi|159479268|ref|XP_001697715.1| hypothetical protein CHLREDRAFT_105431 [Chlamydomonas reinhardtii]
 gi|158274083|gb|EDO99867.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 198

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 65/167 (38%), Gaps = 15/167 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NIG + R+   F + ++ LV  R      +  +  ++      + R F  L + +  L 
Sbjct: 12  HNIGTIVRSATAFGVKEVCLVGSR------QFNTFGSHGSDAHVAFRHFDTLAKCVQHLK 65

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
            +       R     +    E A+ + E  F+G     + G E  G+T+ ++AL +  + 
Sbjct: 66  EVEGC----RVLGVEIC---EGALPVQEHPFTG-PTAFLLGNEGQGMTDRQMALCDGFVY 117

Query: 146 FPVNPL-FPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            P +     SLN++ A  +++      +     +    +   A K +
Sbjct: 118 IPQHGAGTASLNVAVAASIVLHHFAIWAAYPERQREGYKFVVAEKPQ 164


>gi|123968533|ref|YP_001009391.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. AS9601]
 gi|123198643|gb|ABM70284.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. AS9601]
          Length = 160

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 26/166 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           + L +P++ +N G +AR+   FN+  L L+ P      +K    +         V V  +
Sbjct: 3   VALFEPRIPQNTGNIARSCAAFNIP-LNLIEPLGFKLEDKYLKRA--GLDYWPLVTVNQY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N ++ +A           +++  + +   K+  + L +  F   ++ ++FGRE  GL +
Sbjct: 60  ENFEKFLA-----------SKSTKRIISFSKKNGLYLKDFKFKQDDI-LLFGREDSGLPD 107

Query: 135 EEIALSNAIISF--P----VNPLF---PSLNISQAVLLMVWECMEN 171
             I  S+ +IS   P     N       SLN+S A  + ++E  + 
Sbjct: 108 SIIDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAIYEAYKQ 153


>gi|315655315|ref|ZP_07908215.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490255|gb|EFU79880.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 154

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 19/154 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +I  +P++  N G   R       T L +V P         +   A  D   +  +    
Sbjct: 4   VIFFEPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDLDNDTKLKRAGLDYHDLAHLERHP 62

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +L + +A +   IYA T                  +L  +I      G++FG E  GL  
Sbjct: 63  DLDDCLAHVPGNIYAFTG--------------HTDILLPQIQFQDGDGLMFGPEDTGLPV 108

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E +      + +  P+     SLN+S +  + ++
Sbjct: 109 EVMDDPRVTSRVRIPMLDGRRSLNLSISAAIGLY 142


>gi|299143699|ref|ZP_07036779.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518184|gb|EFI41923.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 159

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 38/171 (22%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+  +P++  N G +AR      L  T+L L+ P            +      +  +  +
Sbjct: 4   IVFYEPEIPFNTGAIARTC---GLTKTRLHLIEPLGFSVDSSHLKRAGLDYWHLVDINYY 60

Query: 75  SNLKEAIA--------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  + +              +ATT   +                  +   G    I+FG
Sbjct: 61  KSYDDFLEKNEDEMKDGASLYFATTKAEQKYTDV-------------KFKDGDY--IMFG 105

Query: 127 RERWG-----LTNEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMEN 171
            E  G     L N+ I      I  P+   +  SLN+S +  ++++E +  
Sbjct: 106 PETRGIPESILFND-IEHC---IKIPMLKDYGRSLNLSNSANIILFEALRQ 152


>gi|295395440|ref|ZP_06805639.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971762|gb|EFG47638.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 330

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 25/176 (14%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           PQ        V++L   +   N G V R         +   N      + K   ++A + 
Sbjct: 166 PQAITKDSKLVVVLSQVRDPGNAGTVLRVADAAGADSVIFTNSSVDVYNPKTVRATAGSL 225

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNF----------KSVLAPKEAAIVLNERI 115
             +  V     L E +          AR R               +  P +  + L+   
Sbjct: 226 FHLPVVTGVG-LPEVVEL--------ARARGLQVLAADAHPPAHDLHVPWDTGLDLS--- 273

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              Q    +FG E WGL  ++   +++ ++ P+     SLN++ A  + ++E   N
Sbjct: 274 ---QPTAWVFGNEAWGLPEKDRKQADSAVAIPLYGQAESLNLATAAAVCLYESARN 326


>gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
          Length = 229

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +++A
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDSVA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 188


>gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 267

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 18/150 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE----AI 81
           EN+G + R    F +  + L          ++   S     V+   RV     E    A+
Sbjct: 131 ENLGAMFRNAAAFGVDGVLLGASCADPLYRRSVRVSMG--HVL---RVPFTTAERWPCAL 185

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALS 140
            +L        R      + L P+  A+ L     +G + + ++FG E  GL+   +  +
Sbjct: 186 DEL--------RRYGFHLAALTPRSEAVTLRNVHEAGYERIALLFGSEGHGLSQAALDAA 237

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++ +  P+     SLN++ A  +  +E   
Sbjct: 238 DSWVRIPMASGVDSLNVATAAAVAFYELTR 267


>gi|160897116|ref|YP_001562698.1| RNA methyltransferase [Delftia acidovorans SPH-1]
 gi|160362700|gb|ABX34313.1| RNA methyltransferase, TrmH family, group 2 [Delftia acidovorans
           SPH-1]
          Length = 165

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G V R   N   + L L+ P      ++    +       +    R  
Sbjct: 4   IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPLGFSMEDRLMRRA--GLDYHEYAPVRRH 60

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ +  + D       ++A T  + +   ++   P +                ++FG E 
Sbjct: 61  ADWQAFLQDCQPDRQRMFAMTTHSSSPAHAIGFQPGDW---------------LVFGSES 105

Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  E          +  P+ P   SLN+S AV + V+E    
Sbjct: 106 KGLPAEVREQFPPQQRLRLPMLPQQRSLNLSNAVAVTVFEAWRQ 149


>gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
 gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
          Length = 229

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ +++A        V+   N+ +A+ 
Sbjct: 30  PHNVSAIIRTADAVGVHEVHAV-----WPGNRMRTMASSAAGSNSWVEVKTHRNIGDAVG 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L       AR      + L+  + A+   E I   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  HLK------ARGMQILATHLS--DKAVDFRE-IDYTRPTCILMGQEKTGITEEALRLADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +          P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYRRANSTLPEEEQQRLLF 188


>gi|94987568|ref|YP_595501.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731817|emb|CAJ55180.1| RNA methyltransferase, TrmH family, group 2, putative [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 153

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 22/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L  P++  N G +AR       T L L+ P      ++    +         V  +V+
Sbjct: 3   ILLYQPEIPPNTGNIARLCAAT-HTPLHLIEPLGFKLEDRYLKRA--GLDYWKHVILKVW 59

Query: 75  SNLKE-AIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             L +  ++D     +  T+AR        +                 +  ++FGRE  G
Sbjct: 60  PQLDDYLLSDGLGRRLVITSARGGVAVHQFMF--------------SADDTLVFGRETAG 105

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L  + +      +  P+     SLN+S A  +++++ + 
Sbjct: 106 LPKDLMDQYEHKVRIPIYSTVRSLNLSTAAGIILYQALS 144


>gi|326381925|ref|ZP_08203618.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199351|gb|EGD56532.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 154

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+   P +  N G   R   N    +L L+ P     ++     +      + +V V  
Sbjct: 3   RIVYFQPCIPPNTGNAIRIAANTGC-ELHLIEPLGFTMTDAQVRRAGLDYHEMANVTVHP 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +L  A   L    ++A TA               A      +       ++FG E  GL 
Sbjct: 62  DLATAWEKLAPTRVFAFTA--------------HATRFYTDVSYEPGDVLLFGPEPTGLP 107

Query: 134 NEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171
           +E +  ++  ++     P+     S+N++ A  + ++E    
Sbjct: 108 DEVL--ADPHVTDQLRIPMLEGRRSMNLANATSVALYEAWRQ 147


>gi|251793795|ref|YP_003008525.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247535192|gb|ACS98438.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 158

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +   +  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFADIKK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               +  +                 K + A        +  +       ++FG E  G+ 
Sbjct: 60  HKTFEAFL------------QSEQPKRLFALTTKGTPAHSEVTFELGDYLMFGPETRGIP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +    +   I  P+     S+N+S +V + ++E    
Sbjct: 108 MDILNNMPAEQKIRIPMTANSRSMNLSNSVAVTIYEAWRQ 147


>gi|116492956|ref|YP_804691.1| rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC 25745]
 gi|116103106|gb|ABJ68249.1| Predicted rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC
           25745]
          Length = 172

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 37/172 (21%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P +  N G +AR     N   T L L+ P     ++K    +       D V + 
Sbjct: 5   IVLFEPLMPANTGNIARTCAGTN---TVLHLIKPLGFTINDKTVKRA--GLDYWDKVEIV 59

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-----FSGQNVGIIFGR 127
              NL E +A +            + K +    + A     +       + ++  ++FG+
Sbjct: 60  YHENLPEFLATV-----------PDKKRLFVVSKFAKRAYSQADYTSENNDEDNYLLFGK 108

Query: 128 ERWGLTN------EEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172
           E  GL        EE A     I  P N     +LN+S +  ++++E +   
Sbjct: 109 ETTGLPEAFMRQYEECA-----IRIPQNDENIRALNLSNSAAIVIYEVLRQQ 155


>gi|259048232|ref|ZP_05738633.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
           ATCC 49175]
 gi|259035293|gb|EEW36548.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
           ATCC 49175]
          Length = 169

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 29/166 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FS 75
           I+L +PQ+  N G +AR     N + L L+ P      +K    +         V + + 
Sbjct: 6   IVLFEPQIPANTGNIARTCAATN-SPLHLIEPLGFSTDDKHLKRA--GLDYWHDVDITYH 62

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLT 133
              EA  D               + +    + A    +   +   +    +FG+E  GL 
Sbjct: 63  KSMEAFLDY-----------LGERPLYLITKFANHTYDEVDLARDEEQFFMFGKETTGLP 111

Query: 134 ------NEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
                 NEE       +  P+N     SLN+S    ++V+E +   
Sbjct: 112 EEFMRENEE-----KCLRLPMNDTHVRSLNLSNTAAIVVYEALRQQ 152


>gi|269123755|ref|YP_003306332.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
 gi|268315081|gb|ACZ01455.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
          Length = 172

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 75/184 (40%), Gaps = 30/184 (16%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L  P++  N G + R+    N   T L L+ P     S+K    +         V  +
Sbjct: 3   IVLYQPEMPYNTGNIGRSCVITN---TTLHLIKPLGFEISDKHIKRT--GLDYWKYVDLK 57

Query: 73  VFSNLKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ + ++ + +       +ATT  +R          +                I+FG E 
Sbjct: 58  IWESFEDFMENKGSGKIYFATTKTDRKYSDVQFEEDDY---------------IMFGPES 102

Query: 130 WGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
            GL  E +       I+ P+  +  SLN+S + +++++E +     + E N++++   A 
Sbjct: 103 RGLPEEILNRYKEQNITIPMLKIGRSLNLSNSAVIILYEALRQQ--NFEFNMEDEKVEAI 160

Query: 189 KGEL 192
           + +L
Sbjct: 161 RKDL 164


>gi|145297150|ref|YP_001139991.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849922|gb|ABO88243.1| tRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 248

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 68/157 (43%), Gaps = 22/157 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R      + ++  V P+      K + ++  +   +D V++  ++  A+A+L
Sbjct: 30  PHNLAAIVRTADAIGIHRVHAVWPKTWI--HKRKGTARGSQNWVD-VKLHPDIGSAVAEL 86

Query: 85  HF----IYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 I AT  + +  +F+++   +                 I+ G+E+ G+  E +AL
Sbjct: 87  KASGMQIVATHLSESSVDFRTIDYTR--------------PTAILVGQEKHGIGEEALAL 132

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++  I  P+  +  SLN+S A   +++E      ++ 
Sbjct: 133 ADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQRELAG 169


>gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
          Length = 250

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
            L    + P +  IL   +   N+G   R+   F +    ++ P+D     +   R  + 
Sbjct: 88  SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 145

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  +   +RV +    +     +  +I  T                 A  L + I    
Sbjct: 146 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++ I+ G E  GL        + +   P+     SLN+S A  + ++E        + 
Sbjct: 192 DIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 249


>gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 281

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P++  +    V +L + +   N G V R         + L +      + K+  +S  + 
Sbjct: 114 PEILAARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSL 173

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123
             +        +++A+  L        R+            AA + +E      G     
Sbjct: 174 YHLPVAVGVP-VEQAVQGL--------RDAGVRILAADGAGAADLDDELDAGTMGTPTAW 224

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++            + 
Sbjct: 225 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 281


>gi|302205595|gb|ADL09937.1| Putative tRNA/rRNA methyltransferase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330148|gb|ADL20342.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275830|gb|ADO25729.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium
           pseudotuberculosis I19]
          Length = 176

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           II   P +  N G   R         L L  P      EK    +      +  V +  N
Sbjct: 26  IIFDQPVIPPNTGNAIRMCAGTG-AHLHLAGPLGFNLEEKNLRRAGLDYHDLAEVSIHEN 84

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+     L    I+A T   + +   +                     ++FG E  GL  
Sbjct: 85  LERCFDSLPHTRIFAFTTHGKTHHSDIR--------------WESGDALLFGTEPTGLAE 130

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +       ++  P+ P   S+N+S A  +  +E    
Sbjct: 131 ETLVHPRITQLVRIPMLPGRRSMNLSNAAAVAAYEVWRQ 169


>gi|167626500|ref|YP_001677000.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596501|gb|ABZ86499.1| RNA methyltransferase, SpoU family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 163

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 22/155 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I L +P++  N G + R   N    +L L+ P      +K    +       +    +++
Sbjct: 12  IALYEPEIPPNTGNIIRLCANAG-AKLHLIEPLGFKLEDKQLRRA--GLDYHEFADLKIY 68

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N  E       + I+A T + +  +  V    +                ++FG E  GL
Sbjct: 69  KNFDEFYQKNKQNKIWACTTKAKQYYHQVNFNYDD--------------ILLFGPETRGL 114

Query: 133 TNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVW 166
             + + L     +  P++    SLN+S +V ++++
Sbjct: 115 PIDVLKLLEKTQLKIPMHKNSRSLNLSNSVAVILY 149


>gi|182419771|ref|ZP_02951011.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237666641|ref|ZP_04526626.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376319|gb|EDT73901.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237657840|gb|EEP55395.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 154

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 28/163 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           I+L  P++ +N G +AR      LT   L L+ P     +EK    +          ++ 
Sbjct: 5   IVLYQPEIPQNTGNIARTCV---LTDCKLHLIKPLGFDINEKQVKRA--GLDYWSELNLE 59

Query: 73  VFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           +  + ++ +          ATT     ++  +               SG    I+FGRE 
Sbjct: 60  IHESYEDFLEKYGNERIFLATTHETGTHYDEI------------EFKSGD--FIMFGRET 105

Query: 130 WGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            G+  E++   +  +  P+      SLN+S  V ++ +E +  
Sbjct: 106 CGVP-EDVHNRHKGLRVPMIKSSTRSLNLSNTVAIVAYEALRQ 147


>gi|152994588|ref|YP_001339423.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150835512|gb|ABR69488.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas sp. MWYL1]
          Length = 157

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 21/170 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G V R   N     L L+ P      +K    +         ++ + +
Sbjct: 4   IVLYQPEIPPNTGNVIRLCANTG-YHLHLIEPLGFELEDKKLRRAGLDYHEFTRLKRYPD 62

Query: 77  LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +   ++  IYA T +                  +      +N  ++FG E  GL  
Sbjct: 63  FQAFVNQNEIGTIYALTTK--------------GSHTHSEASFAENDVLVFGPETRGLPA 108

Query: 135 EEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           E I     +  +   P+     SLN+S  V +MV+E       +   + K
Sbjct: 109 EFIEALPPAQRL-RLPMQANSRSLNLSNTVAVMVYESWRQLGYAMPADSK 157


>gi|110005185|emb|CAK99512.1| putative trna /rrna methyl transferase protein [Spiroplasma citri]
          Length = 174

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 22/167 (13%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + K   IIL +P++ +N+G + R     N  +L L+ P      E+  + S+     +D 
Sbjct: 3   TTKKINIILFEPEIAQNVGAIMRTCVAIN-AKLHLIEPFGFIFDERFITRSSA--NYVDF 59

Query: 71  V--RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                +++    +    +L    AT    R   +                   + + I+F
Sbjct: 60  ADYETYNDWNHFLQLNPNLKLYCAT----RYAQQP---------HSAIDFTKDEKIFILF 106

Query: 126 GRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GRE  G+    +          P++    SLN++  V ++ +E M  
Sbjct: 107 GRESTGIPTAILKEHLARTFRIPMSEKVRSLNVANTVGIVGYEIMRQ 153


>gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N+G + R+   F    + +   R    +     +SA A   ID   +  N+
Sbjct: 91  ILDQIEDPHNLGAIIRSAEAFGFDGIVISERRSAKVNSTVYKTSAGAINNIDIA-MVKNI 149

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             AI ++            NF       EA   + +   +G  + ++ G E  GL+    
Sbjct: 150 NRAIKEI---------KEENFWVYGLAGEADGDITQTDLTG-KIALVVGNEGKGLSRLVR 199

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + +I  P+     SLN S A  + ++E +  
Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|241758743|ref|ZP_04756856.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
 gi|241320951|gb|EER57164.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
          Length = 263

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            + G  ++L   Q   N G + R+     + Q+   N      S K   +   A  ++  
Sbjct: 112 PSDGDCVVLERVQDPGNAGTILRSAAAAGIRQIVCGNDSVDIWSPKVLRAGMGAHFLLS- 170

Query: 71  VRVFSNLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +F+ ++     E     H I+AT    RN     +                Q+   +F
Sbjct: 171 --IFNRVELSAWMETYQ--HQIWATALGGRNIGLYEMD-------------LSQSCAWVF 213

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G++      ++A +  P+     SLN++ A  + ++E M   I
Sbjct: 214 GNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQRI 261


>gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 266

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 16/152 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   NIG + R      +  + L+          +  + A A   +  ++  ++ +  + 
Sbjct: 126 QDPGNIGSILRTADAVGVRYVILLGDSVDPYDPNSVRAGAGATFTVKLIK--TSFERLLD 183

Query: 82  -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
             ++H I             V+     A +   R+       ++ G ER GL   E +  
Sbjct: 184 WKNIHQI------------PVIGAVGGAPLNYSRVNYPYPCILLMGSERQGLDLREQSSC 231

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++S P+     SLN++ A  ++++E  +  
Sbjct: 232 DMLVSVPMVGKVDSLNLAVATSVILYEIFDQR 263


>gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 237

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N+G + R+   F    + +   R    +     +SA A   ID   +  N+
Sbjct: 91  ILDQIEDPHNLGAIIRSAEAFGFDGIVISERRSAKVNSTVYKTSAGAINNIDIA-MVKNI 149

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             AI ++            NF       EA   + +   +G  + ++ G E  GL+    
Sbjct: 150 NRAIKEI---------KEENFWVYGLAGEADGDITQTDLTG-KIALVVGNEGKGLSRLVR 199

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + +I  P+     SLN S A  + ++E +  
Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|254427839|ref|ZP_05041546.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
 gi|196194008|gb|EDX88967.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
          Length = 156

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC----VIDSVR 72
           I L +P++  N G + R   N    QL L+ P  G+  E+ +   A  D      +   R
Sbjct: 4   IALFEPEIPPNTGNIIRLAANTG-AQLHLIEPL-GFSLEEKKLRRAGLDYSEFAALQVHR 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+  +E+IA       TT  +R +              +E  F   +V ++FG E  GL
Sbjct: 62  DFAAFQESIAGQRLFAMTTKGSRPH--------------SEACFQDGDV-LLFGPETRGL 106

Query: 133 TNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  +        +  P+     SLN+S AV + ++E    
Sbjct: 107 PDPILKSLPPTQRLRLPMVADSRSLNLSNAVAVTLYEAWRQ 147


>gi|52842704|ref|YP_096503.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629815|gb|AAU28556.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 174

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P++  N G + R   N    QL L++P      +K    +        S+  + N
Sbjct: 29  IALYQPEIPPNTGNIIRLCANTG-AQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYEN 87

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  +       ++  +A+ +  +  V      A  +           ++FG E  GL  
Sbjct: 88  WQTFLQSHSQRRLFCCSAKGKVKYSDV---DYKADDI-----------LLFGPESCGLPQ 133

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +    + I  P+     SLN+S AV ++++E    
Sbjct: 134 QILNQ-YSTIRIPMRENNRSLNLSNAVAIILYEAWRQ 169


>gi|307128795|ref|YP_003880811.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
 gi|306526324|gb|ADM96254.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
          Length = 230

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 33/208 (15%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++ N+ +  + + ++      N+  V R      + Q+  V     WP+ 
Sbjct: 1   MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV-----WPTN 55

Query: 56  KARSS---SANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAA 108
           + R+    +A ++  +  V     +++A+  L      I AT     N   S +  +E  
Sbjct: 56  RMRTLVSTAAGSNSWV-QVETHRTVQDAVGHLKTQGMQILAT-----NLSASAVDFRE-- 107

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                 +   +   I+ G+E+ G+T + +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 108 ------VDYTRPTCILLGQEKTGITADALALADQDIIIPMVGMVQSLNVSVASALILYEA 161

Query: 169 MENSIVSSEKNVKEQNTPATKGELLSFL 196
                ++     + + +P  + E    L
Sbjct: 162 QRQRQLAGMY--QRECSPLDEEEQQRLL 187


>gi|298346770|ref|YP_003719457.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389526|ref|ZP_07371489.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656772|ref|ZP_07909659.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236831|gb|ADI67963.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327336|gb|EFL94571.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492727|gb|EFU82331.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 154

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 19/154 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +I  +P++  N G   R       T L +V P         +   A  D   +  +    
Sbjct: 4   VIFFEPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDLDNDTKLKRAGLDYHDLAHLERHP 62

Query: 76  NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +L + +A +   +YA T                  +L  +I      G++FG E  GL  
Sbjct: 63  DLDDCLAHVPGKLYAFTG--------------HTDILLPQIQFQDGDGLMFGPEDTGLPV 108

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E +      + +  P+     SLN+S +  + ++
Sbjct: 109 EVMDDPRVTSRVRIPMLDGRRSLNLSISAAIGLY 142


>gi|229918148|ref|YP_002886794.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp.
           AT1b]
 gi|229469577|gb|ACQ71349.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp.
           AT1b]
          Length = 157

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           +++  P++  N G V+R     N + L L+ P      +K    +           VR  
Sbjct: 5   VVMFQPEIPANTGNVSRTCAATN-SVLHLIRPLGFSTDDKMLKRA--GLDYWQFVDVRYH 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L+E      D  F Y T  +    + S L   +             +   +FGRE  G
Sbjct: 62  DSLEELWEKHPDGQFFYIT--KYGEQYPSDLDVSDV----------DGDYFFVFGRETKG 109

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E I    +  I  P + L  SLN+S    ++V+E +   
Sbjct: 110 LPMEVIENNLDRCIRLPQSNLVRSLNVSNTAAIIVYEALRQQ 151


>gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
 gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
 gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
 gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
          Length = 231

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 61/156 (39%), Gaps = 12/156 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   Q   N+G + R      +  L +   R    +      S+       ++++  
Sbjct: 86  VLVLDHIQDPHNLGAIIRTANTCGIKHLIISKERSANITSTVLKVSSGGFV---NMKIIK 142

Query: 76  NLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                   ++ I AT T   + N+   ++  +       ++   +   ++ G E  G++ 
Sbjct: 143 --------VNSISATLTKLKKWNYWIYVSALDETAQKVNQVTFNKPSVLVVGNEGDGVSK 194

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             +  ++ +I  P      S+N+S A  ++++E  +
Sbjct: 195 STLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 230


>gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 244

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 61/156 (39%), Gaps = 12/156 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   Q   N+G + R      +  L +   R    +      S+       ++++  
Sbjct: 99  VLVLDHIQDPHNLGAIIRTANTCGIKHLIISKERSANITSTVLKVSSGGFV---NMKIIK 155

Query: 76  NLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                   ++ I AT T   + N+   ++  +       ++   +   ++ G E  G++ 
Sbjct: 156 --------VNSISATLTKLKKWNYWIYVSALDETAQKVNQVTFNKPSVLVVGNEGDGVSK 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             +  ++ +I  P      S+N+S A  ++++E  +
Sbjct: 208 STLNEADQVIYIPQKGSVQSMNVSVATGILLYELTK 243


>gi|59710710|ref|YP_203486.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri ES114]
 gi|59478811|gb|AAW84598.1| tRNA (Guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114]
          Length = 229

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIAD 83
           N+  + R      + ++  V     WP+E+ +     SA A   +D V    N+++A A 
Sbjct: 32  NVSAIVRTADATGIHKIHAV-----WPTEQMQMLGHTSAGARNWVD-VETHKNIEDAFA- 84

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                  T + +          + A+   E I   +   II G E+ G++ + +A+++  
Sbjct: 85  -------TLKEQGMQILATNLSDTAVDFRE-IDYTKPTAIILGSEKTGISKKALAMADQD 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           I  P+  +  SLN+S A  L+++E      ++   + +E   P
Sbjct: 137 IIIPMVGMVQSLNVSVASALILYEAQRQRDLAGMYDREESMLP 179


>gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
           BSR3]
 gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
           BSR3]
          Length = 249

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 68/180 (37%), Gaps = 25/180 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T               +A   L E    G
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTA-------------DDAGASLYETKLDG 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             V ++ G E  G+        + +++ P+     SLN+S A  + ++E +     +  K
Sbjct: 191 -PVALVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLYEAVRQRRAALAK 249


>gi|282892401|ref|ZP_06300751.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497803|gb|EFB40164.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 150

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73
            ++L  PQ+ +N G V R         L L+ P     +++    +       +  +V+V
Sbjct: 2   AVVLFQPQIPQNTGNVVRTCAVTG-QNLILIGPLGFSITDRWLKRA--GLDYWEGVNVQV 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL+E +           R   NF         A      +       +IFG E  GL 
Sbjct: 59  LDNLEELLD----------RTSENF---YFFSSHATQNYTDVSYQPKDLLIFGAETHGLP 105

Query: 134 NEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                   N  +  P+      LN++ +V + V+E         E
Sbjct: 106 ESITNKWPNRCVKIPMVSGVRCLNLATSVGIGVYEAWRQQGFKKE 150


>gi|212633214|ref|YP_002309739.1| tRNA guanosine-2'-O-methyltransferase [Shewanella piezotolerans
           WP3]
 gi|212554698|gb|ACJ27152.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 217

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83
           NI  V R      + ++  V     WP  + R    +++ +   + S +  + + +A+A+
Sbjct: 21  NIAAVIRTADAVGIHEIHAV-----WPEIEMRVSGNTASGSQQWVKS-KAHNKMSDAVAE 74

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                    R ++         E A+   E I   +   II G ER G++ E IA ++  
Sbjct: 75  F--------RRQDMQILATNFSETAVDFRE-IDYTRPTAIILGNERDGVSPEGIASADQH 125

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           +  P+  +  SLN+S A  L+++E       +     ++ + 
Sbjct: 126 VIIPMIGMVQSLNVSVAGALIMYEAQRQREAAGMYGTRKLDE 167


>gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
           thermophilum H-6-12]
 gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
           thermophilum H-6-12]
          Length = 241

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  +++L   Q   N+G +AR       + + +   R    +  +  +SA A   I  VR
Sbjct: 91  KSVIVVLDHIQDPHNLGAIARTSEFAGASAIVIPKARSAGVTSASFKASAGALSYIPVVR 150

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V SN+   + +L          +     ++        L  ++     + ++ G E  GL
Sbjct: 151 V-SNIANFLREL----------KKKGWFIVGADLDTENLYNQVNYRFPLALVVGSEDEGL 199

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                   + ++  P      SLN+S A+ +++++  E+
Sbjct: 200 HRIVKESCDLLVKIPSYGKVESLNVSVALGIILYKIRES 238


>gi|332284294|ref|YP_004416205.1| RNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330428247|gb|AEC19581.1| RNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 264

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 15/173 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M P AP L        + L   Q   N+G + R      +    L        S K   S
Sbjct: 106 MAP-APVLPARITHNCLWLDRLQDPGNVGTLLRTAAAAGIQHAYLSTGCASAWSAKVLRS 164

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +  A  V+           A+          A   ++ + +      A            
Sbjct: 165 AQGAHFVMTIHEHVD--LAALRGC-LAVPLIATALDDAQPLYDASLPA-----------Q 210

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              +FG E  G+    +A ++  +  P      SLN++ A  + ++E    ++
Sbjct: 211 CAWVFGNEGQGVDPVLLAQADMRVFIPQAADVESLNVAVAAGVCLFEQRRLAM 263


>gi|198282557|ref|YP_002218878.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666125|ref|YP_002424748.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247078|gb|ACH82671.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518338|gb|ACK78924.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 171

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +P++  N G + R   N   T L LV P      ++    +       +  +V  +
Sbjct: 8   VILYEPEIPPNTGNIIRLCANTGAT-LHLVEPLGFAWDDRRLRRA--GLDYHEFAQVHRH 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A          + R       V A           +       ++FG E  GL    
Sbjct: 65  ADWA----------SCRAFLGDAHVFAFSTKGTQFYHDVAYQPGDALLFGPETRGLPAHL 114

Query: 137 IAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +  ++  P+     SLN+S A  + V+E    
Sbjct: 115 LNSLPARQVLRLPMRSGQRSLNLSNACAVAVFEAWRQ 151


>gi|317153031|ref|YP_004121079.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
 gi|316943282|gb|ADU62333.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 150

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 23/167 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73
            I+L  P++  N G +AR       T L L+ P      +K    +         V   V
Sbjct: 2   RIVLYQPEIPPNTGNIARLCAAT-RTPLHLIEPLGFTIDDKHLRRA--GLDYWPHVDVTV 58

Query: 74  FSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +  + +  +     + A+T     + +    P +                I+ G E  
Sbjct: 59  HPDFDDFLTRVSPARLVLASTRATAPHHRFAFRPDD---------------AIVMGPETR 103

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           GL  + +A     +  P+     SLN+S A  ++++E +  + +  +
Sbjct: 104 GLPADMLARYPDGVRIPIWGEVRSLNLSTATGVLLFEALRQTGLIPD 150


>gi|331697623|ref|YP_004333862.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952312|gb|AEA26009.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 279

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 15/165 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           PQ   +A   V +LV      N+G V R         + L        + KA  +S  + 
Sbjct: 105 PQALGAAPQLVAVLVGVADPGNVGTVVRCADAAGADAVLLAGDTVDPHNGKAVRASTGSV 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL----NERIFSGQNV 121
             +   R          D   + A     R     +LA      +           G  V
Sbjct: 165 FHLPLARD--------RDAGAVLAAC---RAAGLVLLAADAHGELDLHDPAADAVLGGRV 213

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +FG E  G+ +E +A ++  +S P++    SLN++ A  + ++
Sbjct: 214 AWVFGNEAHGVPDEVLAAADHRVSVPIHGRAESLNLATAAAICLY 258


>gi|302527165|ref|ZP_07279507.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
 gi|302436060|gb|EFL07876.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
          Length = 153

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 21/167 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++   P++  N G   R   N    +L LV P      +K    +      +  V V +
Sbjct: 3   RVLFYRPEIPPNTGNAIRLAANTGC-ELHLVEPLGFTLEDKQLRRAGLDYHDLARVHVHA 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +L  A   L    +YA +A               A  L   +       ++FG E  GL 
Sbjct: 62  DLAAAWQVLLPAKVYAFSAT--------------ATRLYTDVSYAPGDVLMFGPESAGLP 107

Query: 134 NEEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            +E+  +  +   +  P+ P   SLN++    + V+E    +  ++ 
Sbjct: 108 -DEVQRAAEVTDRLRLPMLPNNRSLNLANTAAIAVYEGWRQNGFTTP 153


>gi|86132670|ref|ZP_01051263.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85816912|gb|EAQ38097.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 150

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L++P++  N G + R        +L LV P      +     +           V+ +
Sbjct: 4   IVLINPEIPNNTGNIGRLALGSGC-RLHLVKPFGFKIDDTRLKRA--GLDYWQHLDVQYY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N ++      F       +         P E            +++ ++FG+E  GL  
Sbjct: 61  DNTEDFFKKNAFAKMAFLSSHGTKSHYDIPFE------------EDLFLVFGKESKGLPK 108

Query: 135 EEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           E      + +   P+ +    SLN++ AV ++ +E +  
Sbjct: 109 EITEKHPDQLYKIPLFSEHIRSLNLANAVGIVAYEGIRQ 147


>gi|328957663|ref|YP_004375049.1| putative rRNA methylase [Carnobacterium sp. 17-4]
 gi|328673987|gb|AEB30033.1| putative rRNA methylase [Carnobacterium sp. 17-4]
          Length = 169

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 28/166 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I L +PQ+  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 5   IALFEPQIPANTGNIARTCAATN-THLHLIEPLGFQTDDKHLKRA--GLDYWNEVHITYH 61

Query: 75  SNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NL   +       LH I             V +  + A    +          +FG+E 
Sbjct: 62  KNLAAFMEVAQNGQLHLIT-------KFGHRVYSDVDYATTEGDHY-------FLFGKET 107

Query: 130 WGLTNEEIALSNA--IISFPVNPLF-PSLNISQAVLLMVWECMENS 172
            GL  EE    +    +  P+N     SLN+S    ++++E +   
Sbjct: 108 TGLP-EEFMREHEEDCLRIPMNDEHVRSLNLSNTAAILIYEALRQQ 152


>gi|300778690|ref|ZP_07088548.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300504200|gb|EFK35340.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 150

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G + R       ++L LV+P     ++K    S     V   V  +++
Sbjct: 4   IVLVEPEIPNNTGNIGRLCVGTE-SRLHLVHPFGFVINDKNLKRSGLDYWVHLDVSEYAD 62

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           ++E I    D   ++  ++    ++  +    +    L            +FG+E  GL+
Sbjct: 63  IEEWIETVPDRSRVFLMSSHAEKSY--LETDFQDGDWL------------VFGKESAGLS 108

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +   +  ++ P++ L  S NI+ +V  ++ E    
Sbjct: 109 KDVLDRFDNHLTIPMSKLIRSFNIANSVAFVIGEAKRQ 146


>gi|313206520|ref|YP_004045697.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445836|gb|ADQ82191.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315023539|gb|EFT36543.1| RNA methylase, SpoU family protein [Riemerella anatipestifer RA-YM]
 gi|325336032|gb|ADZ12306.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 176

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 8/163 (4%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + S    V++L + +   N+G + R    F + ++ L       P  +   ++  A   +
Sbjct: 20  KTSKTPLVVVLDNIRSMHNVGALFRTADAFLIEKIVLCGITPQPPHREIHKAALGATESV 79

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D V    ++ EAI +L            N   V    ++  + +  I   Q   ++ G E
Sbjct: 80  DWV-YQKDISEAIKELKT-------QGYNIIGVEQTTDSISLSDFEINPNQKYALVLGNE 131

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL++E + L +  I  P      SLN+S    +++W   + 
Sbjct: 132 VEGLSDEALPLYDNFIEIPQLGTKHSLNVSVCGGIVIWSFFKA 174


>gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 226

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 68/166 (40%), Gaps = 24/166 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           ++IL   +   N+G +AR+   F    + +   +  + ++    +SA A   ID+V V  
Sbjct: 79  ILILDKIEDPHNLGAIARSAEAFGFKGIIIPKHKSVYVNDVVYKTSAGA---IDNVSVVI 135

Query: 75  -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                +++++   + ++I+         FKS L                  + ++ G E 
Sbjct: 136 ETNLSNSIEKLKENGYWIFGADMEGEEYFKSDL---------------KGKIVLVVGNEG 180

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            GL+       + IIS P+     SLN S A  +++ E ++ +   
Sbjct: 181 KGLSPAVRKHCDKIISIPMAGKINSLNASCAASILMAEVLKQNEAD 226


>gi|224102553|ref|XP_002312722.1| predicted protein [Populus trichocarpa]
 gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa]
 gi|222852542|gb|EEE90089.1| predicted protein [Populus trichocarpa]
          Length = 216

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 43/231 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     N+G +AR+   F + +L LV  R  + S  +  S+++        R F +
Sbjct: 7   VVVHNIAKRHNVGTLARSATAFGVKELILVG-RRDFNSFGSHGSTSHLPF-----RHFHS 60

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L +A       D                  +   ++A  +NE  F  ++   + G E  G
Sbjct: 61  LSDARNFLKEKDCDICG-------------VEITDSAFPVNEHPFK-RSTAFLLGNEGTG 106

Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           L+ +E  + +  +  P    +     SLN++ A  +++      +  S       +   A
Sbjct: 107 LSTKECEICDFFVYIP---QYGCGTASLNVTVAASIVLHHFGVWAGFSERSRDGHKFIVA 163

Query: 188 TKGELLSFL--DYLEISLEER---------GYFRPVEKKKKMLDDLYSIFI 227
            +         +  E  ++ER         G+F      +     L ++F 
Sbjct: 164 ERPVKQGKYCTETEESIIQERKSRRENASNGFFDETRNAESTSSPLDTLFT 214


>gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 242

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +    P+L   A+  ++IL +     N+G +AR      +  + +   R    +  A  +
Sbjct: 82  LATLLPELAEKAEATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPTAVKA 141

Query: 61  SANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S  A   +  VRV +    L +  +   +I+ T               +    +  +  +
Sbjct: 142 STGALQHVPVVRVTNLSQTLDKLKSAGFWIFGT---------------DMDGTVYNKWNT 186

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              + +I G E  G+        + +I+ P+     SLN S A  ++++E   N +
Sbjct: 187 KGKIALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMYEVFRNRL 242


>gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis
           DSM 16823]
          Length = 274

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 29/178 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA-- 64
           L    +  +++L       N G +AR      +    LV  +     S  A  +SA A  
Sbjct: 117 LSEGKEPCILVLDRITDVRNFGGIARTAACMGV-DAILVPSKGSALVSADAIKTSAGALH 175

Query: 65  ------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                   ++ +   +  L++  +    +  T               E + V  E     
Sbjct: 176 SIPVCKTDLLKNSLFY--LQQ--SGFQLVSCT---------------EKSKVSAENYSFF 216

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               II G E  G++++ + +S+  +S P+     SLN+  A  ++++E ++    + 
Sbjct: 217 GPTAIIVGSEEDGISHDLLKMSDVRLSIPMAGDISSLNVGVATGMILYERLKQVKAAK 274


>gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7822]
 gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7822]
          Length = 313

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R         L +   R    +      +A A   +   RV  NL  A+ +L
Sbjct: 157 PHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAGALEHLPVARVV-NLSRALEEL 215

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                        F       + +  L+   FSG  VG++ G E  GL+       +A+I
Sbjct: 216 ---------KEAGFWIYGTMSQGSKALHTIDFSGA-VGLVVGSEGEGLSLLTQRCCDALI 265

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           S P+    PSLN S A  + ++E         
Sbjct: 266 SIPLAGKTPSLNASVAAAIALYEVYRQRQSEK 297


>gi|86141816|ref|ZP_01060340.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85831379|gb|EAQ49835.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 179

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + +AK P+++++D     N IG V R    F +  + L       P +    ++  A 
Sbjct: 17  EFKTAAKTPIVVVLDNVRSLNNIGSVFRTADAFLIEAIYLCGICAQPPHKDIAKTALGAT 76

Query: 66  CVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122
             ++     + L   +A+    F  A+           +   E A++LN+  + +  +  
Sbjct: 77  ESVNWKYFENTLDAVDALKKEGFTIAS-----------VEQAEKAVMLNDFEVNAETSYA 125

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           IIFG E  G+  + +  S+ ++  P      S NIS +V +++W+   
Sbjct: 126 IIFGNEVKGVKQKVVDASDIVLEIPQVGTKHSFNISVSVGIVLWDLYS 173


>gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 271

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 17/161 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P + L       N+G + R +       + L++            +S  A   +  VR  
Sbjct: 116 PWVALDSVADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPSCVRASMGALFDLHLVRTS 175

Query: 74  FSNLKEAIADLHFI--YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           F   ++ I     +    T+   + ++     P                + ++ G ER G
Sbjct: 176 FEQFRDWIKRQTGVALIGTSGAAKQDYHDFPYP--------------SRLVLLMGSERLG 221

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L    + L + ++  P+     SLN++ A  ++++E     
Sbjct: 222 LQPYHLELCDEVVRIPMVGRSDSLNLAVATAVVLYEIFNQQ 262


>gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
 gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
          Length = 281

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N+G + R    F +  + +   R    +     +S  A   +  VRV +N+
Sbjct: 137 ILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVGLTGIVAKTSTGAIEHVPVVRV-ANI 195

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + I  L     +++AT               + A     +  S   + I+ G E  G++
Sbjct: 196 AQTIELLQNQGIWVFAT---------------DMAGEDVRQWNSQGPLAIVIGNEGQGVS 240

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                 ++ I++ P+     SLN S A  ++V+E   + +
Sbjct: 241 PLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARHRM 280


>gi|289550428|ref|YP_003471332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|315657919|ref|ZP_07910793.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289179960|gb|ADC87205.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496955|gb|EFU85276.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 156

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 16/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G +AR     + T L L+ P      +K    +         V +   
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTD-THLHLIKPLGFSTDDKMLKRA--GLDYWKFVNI--T 59

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             E+I    F   T+       K  L  K  +      +      ++  IFGRE  GL  
Sbjct: 60  YHESIE--SFFETTSG------KYFLLTKFGKKTYSDFDFSDRDDDLYFIFGRETTGLPQ 111

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 ++  +  P+N    SLN+S    L+++E +   
Sbjct: 112 WVKEKYADTALRIPMNSNIRSLNLSNTAALLIYEALRQQ 150


>gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
 gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
          Length = 264

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 14/169 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
                G  ++L D Q   N+G + R+     + ++ L        S K   +   A  V+
Sbjct: 110 PPRRSGSCLLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVL 169

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            ++   ++L E +             R     +    E +  L  +   G +V  +FG E
Sbjct: 170 -NLHEAADLAEVLGGFA--------GRKLVTHL----EGSQSLYAQDLRG-DVAFVFGNE 215

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             G++   + L++  +  P+     SLN++ A  + ++E +     S+ 
Sbjct: 216 GAGVSAGLLQLADCRVRIPMPGHAESLNVAMAATICLFERVRQLDASAA 264


>gi|326382700|ref|ZP_08204391.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198819|gb|EGD56002.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 251

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 15/153 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +I V+P+   N+G + R         + L+       + K+  +SA +   I  VR    
Sbjct: 103 VIAVEPREPGNLGTLTRCADAMGADAVILLGDSVDPHNGKSVRASAGSVFHIPVVRTVDV 162

Query: 77  LK--EAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                A+AD   +  ATT    +   S+    +            +    +FG E  GL 
Sbjct: 163 AGGLAAVADAGIVTLATTM---DGELSLDDADDVLA---------RPHAWLFGNEAHGLP 210

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + +  ++  +  P+     SLN++ A  + ++
Sbjct: 211 QQVLDGADRSVRIPLRGRAESLNLAAASAVCLY 243


>gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 254

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  +I  + Q   N+G + R    F ++ +  +N      + K   +S  +   I    
Sbjct: 105 KGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIP--- 161

Query: 73  VFSNLKEAIADLHFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                         + ATT+    + +     V A    A  L         +  + G E
Sbjct: 162 --------------VIATTSQILLKLKRRGIKVFATHLKAQKLVHECNISDKIAFVLGNE 207

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             G++   + L +  +  P+     SLN+S A  + ++E     ++ 
Sbjct: 208 AKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIK 252


>gi|257451967|ref|ZP_05617266.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|317058516|ref|ZP_07923001.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313684192|gb|EFS21027.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 257

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 64/155 (41%), Gaps = 21/155 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71
           IIL D Q   N+G + R +     + + L      + +EK   SS  +        ++ +
Sbjct: 109 IILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKI 168

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   LK+     + +   T+   ++   +             +   +    +FG E  G
Sbjct: 169 EIVDYLKK--QQYNIVV--TSLQEDSIPYM------------EMSLDERNAFVFGNEGHG 212

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ E + +++  +  P++    SLN++ A+ ++++
Sbjct: 213 VSKEFLEIADEKVIIPISGQAESLNVAMALGILLF 247


>gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
           litoralis KT71]
 gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
           litoralis KT71]
          Length = 257

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 21/179 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSAN 63
             +  + +  V++L       N+G   R+     +T   +V P+D      A  R  +  
Sbjct: 93  QAVSGNPRALVLVLDGVTDPHNLGACLRSADAAGVT--AVVVPKDNAADITAVVRKVACG 150

Query: 64  ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A   +  VRV +   +L    A   +IY T                 A            
Sbjct: 151 ATETVPLVRVTNLARSLDMLKAAGVWIYGTAG--------------EASESLYSSDLAGP 196

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           + ++ G E  G+        + +++ P+     SLN+S A  + ++E     +++ +  
Sbjct: 197 LALVMGAEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVCLFEIRRQRLLAEDAG 255


>gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
           2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
           51170]
 gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
           2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
           51170]
          Length = 237

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N+G + R+   F    + +   R    +     +SA A   ID   +  N+
Sbjct: 91  ILDQIEDPHNLGAIIRSAEAFGFDGIIISERRSAKVNSTVYKTSAGAINNIDIA-MVKNI 149

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             AI ++          + NF       EA   + +   +G  + ++ G E  GL+    
Sbjct: 150 NRAIKEI---------KKENFWVYGLAGEAEGDITQTDLTG-KIALVVGNEGKGLSRLVR 199

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + +I  P+     SLN S A  + ++E +  
Sbjct: 200 ENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 270

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 18/161 (11%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           AK  V+I  +VD     NIG + R+     +  + L        + +A   S  +  ++ 
Sbjct: 119 AKRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVS 175

Query: 70  SVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +  +L   + DL F   A      ++  S+  P          + +   + II G E
Sbjct: 176 WTWIDGSLSR-LGDLGFRTVAMALT--DDSISIDDPV---------LKTEPKLAIIMGTE 223

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             GL  E I+ ++ ++  P++    SLN++ A  +  WE  
Sbjct: 224 GDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264


>gi|154493345|ref|ZP_02032665.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
           43184]
 gi|154086555|gb|EDN85600.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
           43184]
          Length = 176

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 13/173 (7%)

Query: 1   MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +TP A   ++S K P V++L   +   N+G V R    F +  + L       P  +   
Sbjct: 12  LTPEA--FKDSKKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 69

Query: 60  SSANADCVIDSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           ++  A+  +D    F +  EA+  L    Y   A  +    ++L         N  +   
Sbjct: 70  TALGAEETVDW-EYFEDTMEAVDKLKQQGYTVCAVEQAEGSTMLD--------NLLLDKN 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   +I G E  G+    +   +  I  P      SLN+S    +++W+  + 
Sbjct: 121 KKYAVIMGNEVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQ 173


>gi|317052415|ref|YP_004113531.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316947499|gb|ADU66975.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 158

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 19/166 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           ++L +P++ +N G + R        +L L+ P        AR          +   +RV 
Sbjct: 4   VVLFEPRIPQNTGNIGRLCVLTGC-RLHLIEPLGFSLD--ARHLRRAGLDYWEHLPLRVH 60

Query: 75  SNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             L E +  ++F   T         +             +    G  + +IFGRE  G+T
Sbjct: 61  GTLAEFLEYVNFQKGTLCGITTKARRPY----------TQIPVDGGPLFVIFGREDTGMT 110

Query: 134 NEEIALS-NAIISFPVNP--LFPSLNISQAVLLMVWECMENSIVSS 176
                         P+       S+N+S +V ++V++ +     S 
Sbjct: 111 EALHGACGEKRYRLPMRECSSCRSMNLSSSVAVVVYDILRRQGFSE 156


>gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
          Length = 246

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 36/180 (20%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57
           P L    K P  ++      V      N G +AR      +  + +  P  G    +  A
Sbjct: 87  PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVII--PVRGSASVNADA 139

Query: 58  RSSSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
             +SA A   +   R   NL+  +     +    + AT               E      
Sbjct: 140 VKTSAGALHTLPVCR-EQNLRSTLQYLKDSGFRIVAAT---------------EKGDYDY 183

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      + II G E  G++ E +AL +  +  P+     SLN+S A  ++V+E ++  
Sbjct: 184 TKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEAVKQR 243


>gi|183597245|ref|ZP_02958738.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
 gi|188023560|gb|EDU61600.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
          Length = 167

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 31/172 (18%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVID 69
           P I+L +P++  N G + R   N   + L L++P  G+  +  R   A  D      +  
Sbjct: 2   PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPL-GFTWDDKRLRRAGLDYSEFADIKH 59

Query: 70  SVRVFSNLK-EAI-------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
               ++ L  E +       A    ++A T       K   +               Q+ 
Sbjct: 60  HHDYYAFLDSEGLSPDNNQSASCARVFALT----TKGKPSHSNVSYR----------QDD 105

Query: 122 GIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++FG E  GL    +        I  P+     S+N+S +V ++V+E    
Sbjct: 106 YLMFGPETRGLPPYVLDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 157


>gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 242

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 18/176 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +    P+L   A+  ++IL +     N+G +AR      +  + +   R    +  A  +
Sbjct: 82  LATLLPELAEKAEATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITPIAVKA 141

Query: 61  SANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S  A   +  VRV +    L +  +   +I+ T               +    +  +  +
Sbjct: 142 STGALQHVPVVRVTNLSQTLDKLKSAGFWIFGT---------------DMDGTVYSKWNT 186

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              + +I G E  G+ +      + +I+ P+     SLN S A  ++++E   N +
Sbjct: 187 KGKIALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMYEVFRNRL 242


>gi|228470939|ref|ZP_04055784.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
 gi|228307336|gb|EEK16350.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
          Length = 186

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 10/144 (6%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G + R    F + +L LV      P      ++  A+  +   R   +  EA+    
Sbjct: 38  HNVGSIFRTADAFRIEELLLVGITGCPPHPLLHKTAIGAEEAVPW-RHLDSAIEALEQY- 95

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  R        L     +I L ++     +   +I G E  G+++E I  ++  +
Sbjct: 96  -------RQEGRTILALEQTHQSITLGSQPALDDRGAVLIVGNEVHGVSDEVIQYADYCL 148

Query: 145 SFPVNPLFPSLNISQAVLLMVWEC 168
             P      SLN+S A  + +++ 
Sbjct: 149 EIPQYGTKHSLNVSVATGIAIYDL 172


>gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR]
 gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR]
          Length = 248

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66
           Q+   G  +IL       N+G   R      +T   +V P+D     +   R  ++ A  
Sbjct: 93  QSQQAGLFLILDGVTDPHNLGACLRTADAAGVTG-VIV-PKDKSAQITPTVRKVASGAA- 149

Query: 67  VIDSV--RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             ++V   V +NL  A+ DL     + Y T        +SV                   
Sbjct: 150 --ENVPLVVVTNLARALRDLQELGVWAYGTAG---EATQSVYDVDYRGP----------- 193

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V ++ G E  G+        + ++S P++    SLN+S A  + ++E +   
Sbjct: 194 VALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLFEVVRQR 245


>gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
 gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 270

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 23/178 (12%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
            L    + P +  IL   +   N+G   R+   F +    ++ P+D     +   R  + 
Sbjct: 108 SLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR--AVIAPKDRAVGVTPVVRKVAC 165

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  +   +RV +    +     +  +I  T                 A  L + I    
Sbjct: 166 GAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAV--------------EAETLIQEIDLTG 211

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++ I+ G E  GL        + +   P+     SLN+S A  + ++E        + 
Sbjct: 212 DIAIVLGSEGGGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQREAPAP 269


>gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 259

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 25/169 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI- 68
               G  ++L   Q   NIG + R+     + Q+          S K   ++  A  ++ 
Sbjct: 108 PPQNGDCVVLERIQDPGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRAAMGAHFLLR 167

Query: 69  -----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                +        +E +    F  A TA +   ++  L P                   
Sbjct: 168 LHPASNLAVWRQTYREPL----FATALTANSTPLYRLNLRP---------------PCAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  GLT      +   +  P++    SLN++ A  + ++E +   
Sbjct: 209 LFGNEGGGLTAAARNTATRTVKIPMSGATESLNVAMAATVCLFEQLRQR 257


>gi|319948750|ref|ZP_08022870.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319437583|gb|EFV92583.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 163

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 19/174 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++   P +  N G   R M      +L L  P     SE     +      +  V V
Sbjct: 5   GVRVLFDRPCIPPNTGNAIR-MAAGAGCELHLAGPLGFDLSEPHLRRAGLDYHDLAHVEV 63

Query: 74  FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +L+ A + L    ++A +AR              A +   ++       ++FG E  G
Sbjct: 64  HEDLESAYSRLLPARVWAFSAR--------------ADLALPQVRFAPGDVLLFGPEPTG 109

Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           L  + +A     A +  P+ P   S+N+S A  + V+E           +    
Sbjct: 110 LAEDVLADPRVTARVRIPMLPGRRSMNLSNAAAVAVYEAWRQQDYQGGMDFPAD 163


>gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           IOP40-10]
 gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MEX-5]
 gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           IOP40-10]
 gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MEX-5]
          Length = 247

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 25/174 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R   +       ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKEAGVWVIGTS--------------DDASATLYDTKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             V I+ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 190 GPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|329296824|ref|ZP_08254160.1| tRNA guanosine-2'-O-methyltransferase [Plautia stali symbiont]
          Length = 239

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 18/174 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS + R+   ++        V+   ++ +A+ 
Sbjct: 16  PHNVSAVIRTADAVGIHEVHAV-----WPSVRMRTMVSASAGSNSWVKVKTHRHIADAVR 70

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        ++R          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 71  HL--------KDRGMQVLATHLSDKAVDFRE-IDYTKPTCILMGKEKTGITAEALALADR 121

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
            I  P+  +  SLN+S A  L+++E       S     + Q++   + E    L
Sbjct: 122 DIIIPIVGMVQSLNVSVASALILYEAQRQRQNSGMY--RRQHSLLDEDEQQRLL 173


>gi|293391513|ref|ZP_06635847.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952047|gb|EFE02166.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 158

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 21/169 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L L+ P    W  +K R S        +   +  
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKKLRRS---GLDYHEFAEIKK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               +  +                 K + A        +  +       ++FG E  G+ 
Sbjct: 60  HKTFEAFL------------QSEQPKRLFALTTKGTPAHSEVKFALGDYLMFGPETRGIP 107

Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
              +        I  P+     S+N+S +V + V+E           N+
Sbjct: 108 MSILNTMPPEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYEGAVNI 156


>gi|289705119|ref|ZP_06501523.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus
           luteus SK58]
 gi|289558147|gb|EFD51434.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus
           luteus SK58]
          Length = 186

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 41/195 (21%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
                     G  I+L+ P++  N G   R        +L LV P  G+  E A    A 
Sbjct: 16  ADRAPAPGTPGFRILLLTPEIPGNTGNAIRLAALTG-AELHLVEPL-GFGFEDAHLRRAG 73

Query: 64  ADCVIDSVRVFSNLKEAIADLH-------------FIYATTARNRNNFKSVLAPKEAAIV 110
            D        + +L  A+  +H              + A TAR                V
Sbjct: 74  LD--------YHDL--AVVTVHPDLDAALAALAPARVLAFTAR--------------GSV 109

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++R+       ++FGRE  GL  E +A       +  P+ P   SLN++ AV + V+E 
Sbjct: 110 RHDRVAYRSGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVYEA 169

Query: 169 MENSIVSSEKNVKEQ 183
                 +      + 
Sbjct: 170 WRQHDFAGSAAHPDS 184


>gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
           CC 2a]
 gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
 gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
           CC 2a]
 gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A]
 gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
          Length = 247

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 36/180 (20%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57
           P L    K P  ++      V      N G +AR      +  + +  P  G    +  A
Sbjct: 88  PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVII--PVRGSASVNADA 140

Query: 58  RSSSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
             +SA A   +   R   NL+  +     +    + AT               E      
Sbjct: 141 VKTSAGALHTLPVCR-EQNLRSTLQYLKDSGFRIVAAT---------------EKGDYDY 184

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      + II G E  G++ E +AL +  +  P+     SLN+S A  ++V+E ++  
Sbjct: 185 TKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEAVKQR 244


>gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU
           1054]
 gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
           HI2424]
          Length = 247

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   GP ++LV        N+G   R   +       ++ PRD     +  A   ++
Sbjct: 87  ELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  + V +NL  A+ +L                +    EA+  L E    G  V 
Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEASATLYETKLDG-PVA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae
           ATCC 23330]
          Length = 248

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 25/182 (13%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59
           +   + ++ + P  +LV        N+G   R      +    ++ P+D     +     
Sbjct: 84  HLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSK 141

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            +  A   +  + V +    L+E + +   ++  T      +      P           
Sbjct: 142 VACGAAETVPYITVTNLARTLRE-LKECGIWVVGTDMGGDADLFHYDIP----------- 189

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              Q+V  + G E  G+        +A++S P+     S+NIS +  +++ E      + 
Sbjct: 190 ---QSVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQRTMQ 246

Query: 176 SE 177
           S 
Sbjct: 247 SA 248


>gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 247

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R+   F +  + +   R    +     +SA A   +   +V SN+
Sbjct: 100 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKV-SNI 158

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              I DL     +I  T                 A    E +     V  + G E  G++
Sbjct: 159 NNTIRDLKERGLWIVGT--------------DVNAEKSFEELNYDFPVAFVIGNEGKGVS 204

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +   + ++  P+     SLN S A  +++++ 
Sbjct: 205 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239


>gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
 gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X561]
 gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513]
 gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X514]
 gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X561]
 gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X513]
          Length = 247

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R+   F +  + +   R    +     +SA A   +   +V SN+
Sbjct: 100 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKV-SNI 158

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              I DL     +I  T                 A    E +     V  + G E  G++
Sbjct: 159 NNTIRDLKERGLWIVGT--------------DVNAEKSFEELNYDFPVAFVIGNEGKGVS 204

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +   + ++  P+     SLN S A  +++++ 
Sbjct: 205 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239


>gi|296121726|ref|YP_003629504.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296014066|gb|ADG67305.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 156

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 53/156 (33%), Gaps = 14/156 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P + +N G + R        +L L+ P       +    +      +    V  +
Sbjct: 8   VVLYQPDIPQNTGNIGRTCVAVG-ARLWLIRPLGFVLDARHLKRAGMDYWPMLDYVVVDS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +    L           ++F  V  P    I   E         ++FG E  GL    
Sbjct: 67  LNDVREQL---------PGHDFWYVENPAPRRIWEAEF---KPGSVLVFGSESRGLPPAV 114

Query: 137 IALSNA-IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I      +I  P+ P   SLN++  V   V+E +  
Sbjct: 115 IEECRGQMIDLPMRPEVRSLNLASTVNTAVYEAIRQ 150


>gi|302346096|ref|YP_003814449.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
 gi|302149891|gb|ADK96153.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
          Length = 198

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 13/180 (7%)

Query: 6   PQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            + + + K P+I++   V      N+G V R+   F +  + L       P+ +   ++ 
Sbjct: 22  EEFKEADKLPLIVVLDDVRSLH--NVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTAL 79

Query: 63  NADCVIDSVRVFSNLKEAIADLHF--IYATTARNRNNFKSVLA-----PKEAAIVLNERI 115
             +  +D  R F   ++AI +LH   ++  +         +       P           
Sbjct: 80  GGEDSVDW-RYFERTEDAIEELHRQGVFVYSVEQVEGSTKLQDLNTQNPTNHQHPTPNTQ 138

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               +  I+ G E  G+    + +S+  +  P      SLN+S    +++WE     ++ 
Sbjct: 139 HPSPHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIWEFARQLLIK 198


>gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
 gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
          Length = 248

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 21/168 (12%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           MTP   +++      V++L   Q   N+G + R         + L        + K   +
Sbjct: 95  MTPVERKMKK-----VLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRA 149

Query: 61  SANADCVID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +  +   ++  SV +   L E   D   +Y T      ++              E++   
Sbjct: 150 TQGSLFHVNVTSVDLLEKLPELKEDGFHVYGTALSKATSY--------------EQVAFE 195

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + V ++ G E  G+  + +AL +  +  PV     SLN + A  ++++
Sbjct: 196 EKVALVIGNEAQGVHADVLALCDTRVHIPVLGDVESLNAAVAAGILMY 243


>gi|326796919|ref|YP_004314739.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
           mediterranea MMB-1]
 gi|326547683|gb|ADZ92903.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
           mediterranea MMB-1]
          Length = 157

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G V R   N    QL L+ P      +K    +         V+ ++N
Sbjct: 4   IVLYQPEIPPNTGNVIRLCANTG-YQLHLIEPFGFDLDDKKLRRAGLDYHEFTHVKKYAN 62

Query: 77  LKEAIA---DLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               IA   ++  +YA TT  +R +                     +N  ++FG E  GL
Sbjct: 63  WDAFIAQNENIGTLYALTTKGSRTHS---------------EAEFKENDVLVFGPETRGL 107

Query: 133 TNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E I        +  P+     SLN+S  V +MV+E    
Sbjct: 108 PAEFIEALPKPQRLRLPMQADSRSLNLSNTVAVMVYESWRQ 148


>gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 275

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 17/153 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            N+G + R      +  + L +PR   P   +A   S  A   I   R+     +    L
Sbjct: 134 GNVGAIFRCAAALGVDAIIL-SPRCADPLYRRAVKVSMGAVFAIPYARM----DDWYHGL 188

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             +     R        L P ++A+ L+E    G+ V ++ G E  GL+   + L++  +
Sbjct: 189 GEV-----RAAGFRLLALTPDQSAVPLHE-AELGERVALLLGSEGDGLSARWLDLADERV 242

Query: 145 SFPVNPLFP-----SLNISQAVLLMVWECMENS 172
             P++P        SLN+  A  +     M   
Sbjct: 243 CIPMSPAAMARGVDSLNVVAAAAIACHGLMRGR 275


>gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
 gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 245

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 24/177 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L NS   P ++IL       N+G   R+     +  + +   R    +  A+  ++ A
Sbjct: 86  PDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAGVHAIIVPKDRSAALNATAKKVASGA 145

Query: 65  DCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
              I      +  R    L+EA     +I  T                 A     +    
Sbjct: 146 AEHIPLIRVTNLARTMRVLQEA---NVWIVGTAG--------------EADHTLYQSKMT 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + 
Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRGLK 245


>gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383]
 gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383]
          Length = 247

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 25/174 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R   +       ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     +I  T+              EA+  L E    G
Sbjct: 145 GAADTVPYITV-TNLARALRELKEAGVWIIGTS-------------DEASATLYETKLDG 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             V ++ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 191 -PVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107]
 gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107]
          Length = 240

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 23/159 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVR 72
            I L + Q   N+G + R +  F   +  L++P    P + K   SS  A     ++   
Sbjct: 101 AIYLHEIQDPGNLGTILRTLAWFGGFR-CLLSPGSVDPYNPKVVRSSMGAIFHVPLELDV 159

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++L E               R    + L      + +    F+G     +FG E  G+
Sbjct: 160 SLAHLAE---------------RFARIACLD--MDGVAVRNDAFAGHR-CYVFGNEARGV 201

Query: 133 TNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECME 170
             E++   +  + + P +    SLN++ AV + V+E M 
Sbjct: 202 PREQLQNFDLHMFNIPGSGAIESLNLATAVNICVYELMR 240


>gi|238789531|ref|ZP_04633315.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
           33641]
 gi|238722284|gb|EEQ13940.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
           33641]
          Length = 230

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WP+ +  +   SA        V+  S++ +AI 
Sbjct: 30  PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSSAAGSNSWVQVKTHSHIADAI- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  +++          + A+   E I   +   I+ G+E+ G++ E +AL++ 
Sbjct: 84  -------THLKSQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGISQEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +      +   P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSVLPEEQQQRLLF 188


>gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           C str. Eklund]
 gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           C str. Eklund]
          Length = 263

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 11/159 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R      +  + +   R+   +     +SA A   +   +V +
Sbjct: 116 ILILDEIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKV-A 174

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI ++                  A  +      +  F G  V ++ G E  G++  
Sbjct: 175 NINRAIDEI---------KERGTWVYGADMDGENYCFQTNFKGA-VALVIGSEGRGISKL 224

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                + ++  P+     SLN S A  +M++E ++  + 
Sbjct: 225 TKQKCDVLVKIPMIGKITSLNASVAAGIMMYEVLKQKME 263


>gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus]
          Length = 308

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P++  +    V +L + +   N G V R         + L +      + K+  +S  + 
Sbjct: 141 PEILAARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSL 200

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123
             +        +++A+  L        R+            AA + +E      G     
Sbjct: 201 YHLPVAVGVP-VEQAVQGL--------RDAGVRILAADGAGAADLDDELDAGTMGTPTAW 251

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           +FG E WGL  E  AL++A++  P++    SLN++ A  + ++            + 
Sbjct: 252 VFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 308


>gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
           D2]
 gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
           D2]
          Length = 248

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+     +    +V P+D     +  AR  +  A   +  V V +
Sbjct: 100 VLDGVTDPHNLGACLRSADAAGVHA-VIV-PKDNSAKLNGVARKVACGAAETVPLVHVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L+E      ++  T          V   K               + ++ G E  G+
Sbjct: 158 LARTLREIKDAGVWVIGTAG---ETDTHVFDAKLTGP-----------IALVMGAEGTGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++  P+     SLN+S A  + ++E +   
Sbjct: 204 RRLTREHCDTLVKIPMVGTVSSLNVSVATGICLFEILRQR 243


>gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus epidermidis FRI909]
          Length = 249

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 19/168 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VIIL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156

Query: 76  ---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               + E + D  F I  T A N  +++ +               +  ++GI+ G E  G
Sbjct: 157 LSKTIDE-LKDSGFWIAGTEASNATDYRDL--------------QADMSLGIVIGSEGQG 201

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           ++       +  I  P+     SLN S A  LM++E         EK+
Sbjct: 202 MSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 249


>gi|296120116|ref|ZP_06838670.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967270|gb|EFG80541.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 155

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+  +P +  N G   R        +L LV P      +K    +      +  +++  +
Sbjct: 5   IVFDNPVIPTNTGNAIRTAAVTG-AKLHLVEPLGFNFDDKHLKRAGLDYHDLADLKIHPD 63

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                +A+        TT                A      +       ++FG E  GL 
Sbjct: 64  FDACMDALPGARVFAFTT---------------NATDWFTDVEYTDGDVLLFGTEPTGLP 108

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E +A       +  P+ P   S+N+S A    V+E    
Sbjct: 109 AEHLAHPRITQEVRIPMVPARRSMNLSNAASTAVYEAWRQ 148


>gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           populi BJ001]
 gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           populi BJ001]
          Length = 269

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81
             N+G + R    F +T   +V      P+     A+S+S   + V   + +  NL EA+
Sbjct: 129 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 184

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T   R   +  L     A    + +   +   ++ G E  GL        +
Sbjct: 185 --------ITLGERGFTRIGLDSD--AGTSLDAVGPRRPAVLVLGAEGKGLRQRTTECCD 234

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++         SLN+S A  + ++    +S
Sbjct: 235 LLVRIDATGAIRSLNVSNAAAITLYALTRSS 265


>gi|168002156|ref|XP_001753780.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695187|gb|EDQ81532.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 206

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 26/167 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----V 71
           ++LV PQ+  N G +AR      +  L LV P           S+      ++      V
Sbjct: 27  VVLVSPQIPGNSGSIARTCAATGVG-LHLVEPLGYKIDGSKLKSTG-----LEYWPYVVV 80

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V  +  +        + T  + +N  K +LA  +    ++  +       ++FG E  G
Sbjct: 81  KVHKSWND--------FFTYFQEQNGEKRLLAYTKNGQYVHTDVQYKAGDWLLFGSEVDG 132

Query: 132 LTNEEIAL------SNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
           L    +        +   I  P++  +  SLN+S +  + V+E +  
Sbjct: 133 LPAAALEQSTTGQYAGGTIRLPMSEEYVRSLNLSISAGIGVYEALRQ 179


>gi|271502622|ref|YP_003335648.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
 gi|270346177|gb|ACZ78942.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
          Length = 230

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 90/206 (43%), Gaps = 29/206 (14%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       ++ N+ +  + + ++      N+  V R      + Q+  V     WP+ 
Sbjct: 1   MTPERYTRIREMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV-----WPTS 55

Query: 56  KARSS---SANADCVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVL 111
           + ++    +A ++  +  V+    +++A           AR+ +     +LA   +A  +
Sbjct: 56  RMKTLVSTAAGSNSWV-QVKTHRTIQDA-----------ARHLKTQGMQILATNLSADAV 103

Query: 112 N-ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +   +   +   I+ G+E+ G++ E +AL++  I  P+  +  SLN+S A  L+++E   
Sbjct: 104 DFRDVDYTRPTCILLGQEKTGISGEALALADQDIIIPMIGMVQSLNVSVASALILYEAQR 163

Query: 171 NSIVSSEKNVKEQNTPATKGELLSFL 196
              ++     + +++P  + E    L
Sbjct: 164 QRQLAGMY--QREDSPLDEEEQQRLL 187


>gi|253681869|ref|ZP_04862666.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
           1873]
 gi|253561581|gb|EES91033.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
           1873]
          Length = 160

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 36/175 (20%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +      I+L +P++ +N G + R     N   ++L L+ P      +K+   +      
Sbjct: 2   SDTPNLNIVLFEPEIPQNTGNIGRTCVLTN---SKLHLIKPLGFNIDDKSVKRA--GLDY 56

Query: 68  ID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                + +  +  + I           R   +    L+  + A   ++ +   + V I+F
Sbjct: 57  WPYLKLEIHESFDDMI-----------RKYPDANIYLSTTKEAKYHHDEVNYKEGVFIVF 105

Query: 126 GRERWGLTNEEIALSNAI--------ISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           GRE  GL        + I        I  P+      SLN+S  V ++ +E +  
Sbjct: 106 GRESSGLP-------DYIRDRYIENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQ 153


>gi|302792753|ref|XP_002978142.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
 gi|300154163|gb|EFJ20799.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
          Length = 220

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 26/156 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     NIG +AR+   F ++++ LV  +  + S  +  S+ +        R F +
Sbjct: 5   VVVHNVAKRHNIGTLARSATAFGVSEMILVG-KKDFNSFGSHGSAHHVRF-----RHFHS 58

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L EA                          +   E A+ +++  F  ++   + G E  G
Sbjct: 59  LLEARDYLKGIGCDICG-------------VEITEGAVAVHKHPFQ-RSTAFLLGNEGTG 104

Query: 132 LTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVW 166
           L+ +E+ + +     P       SLN++ A  +++ 
Sbjct: 105 LSPKEMEICDFFTYIPQVGCGTASLNVTVAASIVLH 140


>gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           202]
 gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           202]
          Length = 246

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 20/171 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L + ++  ++IL       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LASKSQPLLLILDGVTDPHNLGACLRTADATGV-DAVIV-PKDKSAQLTSTARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  +RV +             A T R    ++N   V    EA   + E   +G  + 
Sbjct: 147 ETVPLIRVTN------------LARTMRELQEQHNVWIVGTAGEATSSIYEAKLTGA-IA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 194 LVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGICLFEIVRQKL 244


>gi|117621457|ref|YP_854563.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562864|gb|ABK39812.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 253

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 20/156 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R      + ++  V P+      K + ++  +   +D V++  ++  A+A+L
Sbjct: 40  PHNLAAIVRTADAIGIHRVHAVWPKTWI--HKRKGTARGSQNWVD-VKLHPDIGSAVAEL 96

Query: 85  HF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 I AT   + +                  I   +   I+ G+E+ G+  E +AL+
Sbjct: 97  KASGMQILATHLSDSSVD-------------FRAIDYTKPTAILVGQEKHGIGEEALALA 143

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  I  P+  +  SLN+S A   +++E      ++ 
Sbjct: 144 DHHIVIPMVGMVQSLNVSVAAAAILYEAQRQRELAG 179


>gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 280

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 12/171 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A  +        + L   +   N+G + R +     + + LV       + +A  ++  
Sbjct: 120 SARDIDPQGTTVWVALDRVRDPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMG 179

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   +   ++     +A+A   +     A +         P      L           +
Sbjct: 180 SLFHVPLAKMTKEEFKALAK-DWPGTVAATHLKGSVDYRTPDYKQPAL-----------L 227

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + G E+ GL ++  A    +I  P      SLN++ A  + ++E   N + 
Sbjct: 228 VMGNEQKGLEDDTAAACRTLIRIPQVGEADSLNLAVATGISLYEIRRNHLE 278


>gi|88801799|ref|ZP_01117327.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
           23-P]
 gi|88782457|gb|EAR13634.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
           23-P]
          Length = 175

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 14/165 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DC 66
           +      ++IL + +   NIG V R    F + ++ L       P+++   ++  A    
Sbjct: 19  EQKKTPLIVILDNIRSVNNIGAVFRTSDAFLIEKIYLCGICAIPPNKEIHKTALGATESV 78

Query: 67  VIDSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +       L E +  +   + A      +    V  P             G+   I+ 
Sbjct: 79  TWEYAEDTLTLIENLKKEKIKVLAIEQAEGSTKLDVFFPD-----------KGEKYAIVL 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+  E +  ++  I  P      SLNIS    +++W+  +
Sbjct: 128 GNEVKGVQQEVVDAADVCIEIPQLGTKHSLNISVTAGVVIWDLFQ 172


>gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
           DSM 17565]
 gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
           DSM 17565]
          Length = 247

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 32/178 (17%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P L    K P  ++      V      N G +AR      +  + +        +  A  
Sbjct: 88  PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVIIPARGSASVNADAVK 142

Query: 60  SSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           +SA A   +   R   +L+  +     +    + AT               E       +
Sbjct: 143 TSAGALHTLPVCR-EQSLRSTLQYLKDSGFRIVAAT---------------EKGDYDYTK 186

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 187 ADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 307]
 gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 307]
          Length = 291

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 17/169 (10%)

Query: 8   LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANAD 65
           + +    P ++L+D      N+G + R+   F   Q  +   R   P   A + +++ A 
Sbjct: 135 MGDGVNPPRVVLLDKVTDPHNVGAILRSAEVFG-AQAVIAMNRHAAPETGALAKTASGAM 193

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VG 122
                +RV  NL +AI +L                VL     A    E++  G+    + 
Sbjct: 194 ERQPYLRV-RNLADAIVELQ----------GMGYMVLGLDGEAEQTIEQVVDGKTDRAIA 242

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++ G E  GL ++     +A++       F SLN+S A  + ++    +
Sbjct: 243 LVLGAEGPGLRDKTKETCDALVKIDFAGEFGSLNVSNAAAVALYATRSS 291


>gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1]
          Length = 259

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L   + G    LV  Q   N+G + R      +  L L          K   +SA   
Sbjct: 103 PTLPLQSLGLC--LVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRASAGQW 160

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +    V   L           AT    +     ++  +  A ++  +    Q   ++ 
Sbjct: 161 FRLPMQTVTDGL-----------ATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPTLLVM 209

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           G E  GL       S   +  P  P   SLN++ A  ++++E        
Sbjct: 210 GNEGQGLPPAYQDASFTALRIPQEPNVESLNVAIATAVLLYEVYRQRWRD 259


>gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
           str. Tucson]
 gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
           str. Tucson]
          Length = 255

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 22/178 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S   P +++L       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PALLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  +RV      L+       ++  T+                A     +     
Sbjct: 144 GASENVPLIRVTNLVRTLRLLQEMNVWVVGTSG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            + ++ G E  G+        + +IS P+  +  SLN+S A  + ++E +   + S  
Sbjct: 190 PMALVMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLFEAVRQRLCSPG 247


>gi|319898485|ref|YP_004158578.1| RNA methyltransferase [Bartonella clarridgeiae 73]
 gi|319402449|emb|CBI75990.1| RNA methyltransferase [Bartonella clarridgeiae 73]
          Length = 158

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 11/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R    F L  + ++ P     S++    +      ++   +  +
Sbjct: 5   IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFDLSDRNLKRA--GMDYLERASLERH 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L     D      T  R       +L     A      I   +N  ++FGRE  G+ +  
Sbjct: 62  L-----DWQNFIDTMQR---FNHRLLLLSTKAKTCYTEIRYQKNDVLLFGRESAGVPDYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++  ++ P+ P   SLN++ +V +   E +  
Sbjct: 114 YKAADYALTIPMLPHARSLNLAMSVAITTGEALRQ 148


>gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 242

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 18/171 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L   +   ++IL +     N+G +AR      +  + +   R    +  A  +S  A 
Sbjct: 87  PALAEKSDATILILDELTDPHNLGSIARTADATGVDAIIIPKHRAVGITSTAVKASTGAL 146

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  VRV +    L +  A   +++ T               +    +  +  +   V 
Sbjct: 147 QHVPIVRVTNLSQTLDKLKAANFWVFGT---------------DMDGTVYSKWNTKGKVA 191

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +I G E  G+        + +I+ P+     SLN S A  ++++E   N +
Sbjct: 192 LIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEIFRNRL 242


>gi|163788241|ref|ZP_02182687.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876561|gb|EDP70619.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 167

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL-- 84
           NIG + R    F + +L     +D    ++   +S + +  +   ++  N+K+ IA L  
Sbjct: 29  NIGSLFRIADAFGIEELIFCG-KDVSLGKRMTKTSRSTEKYVTH-KIEENIKDVIARLKT 86

Query: 85  --HFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
             HF+ A   T  +++  +  L  K             Q + +I G E +G++++ I L 
Sbjct: 87  KNHFLIALEITGNSQDLSQFTLNTK-------------QPIAVILGDENFGVSDDIINLC 133

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +A+I   +     S+N+ QA  + ++E  + 
Sbjct: 134 DAVIHINMYGNNSSMNVVQATSITLYELTKQ 164


>gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
           paludis DSM 18603]
 gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
           paludis DSM 18603]
          Length = 269

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 29/162 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVF--SNLKEAIA 82
           N+G +AR      +    +V P  G    +     +SA A   + ++ V   S+L + + 
Sbjct: 128 NVGAIARTAECAGVH--AIVVPAKGSAQINPDTIKTSAGA---LYNIPVCRESSLLQTVK 182

Query: 83  -----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                 L  +  T       +                        I+ G E  G++NE I
Sbjct: 183 FLQSSGLQIVCCTEKTTDFIYAPDYT---------------LPTAIVMGGEDDGVSNEII 227

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            +++ +   P+     SLN+S +  ++++E +          
Sbjct: 228 RIADHLAKIPMYGEIESLNVSVSTGVILYEAIRQKRGGPPAP 269


>gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
          Length = 263

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 64/168 (38%), Gaps = 22/168 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           + PV++L   +   N+G + R      +  + L        + K   S+  +   +   R
Sbjct: 112 EEPVLLLDAIRDPGNLGTILRTAEAAGVGDVWLGAGTVDPFNPKVVRSAMGS---LFRTR 168

Query: 73  VFS-NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   +L+EAI +L     ++  T+ R          PK+                I+ G 
Sbjct: 169 IRRVDLREAIPELKKQGYWVVGTSPRAERAHFDCHYPKQ--------------TAILLGN 214

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           E  G++ E  +L +  +  P+     SLN+S    ++++E +      
Sbjct: 215 EGKGISAEIDSLVDDRVKIPMPGQVESLNVSVTAGILLFELLRQQWTE 262


>gi|300857865|ref|YP_003782848.1| hypothetical protein cpfrc_00448 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685319|gb|ADK28241.1| hypothetical protein cpfrc_00448 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 157

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 50/159 (31%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           II   P +  N G   R         L L  P      EK    +      +  V +  N
Sbjct: 7   IIFDQPVIPPNTGNAIRMCAGTG-AHLHLAGPLGFNLEEKNLRRAGLDYHDLAEVSIHEN 65

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+     L    I+A T   + +   +                     ++FG E  GL  
Sbjct: 66  LERCFDSLPHTRIFAFTTHGKTHHSDIR--------------WESGDALLFGTEPTGLAE 111

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +       ++  P+ P   S+N+S A  +  +E    
Sbjct: 112 ETLVHPRITQLVRIPMLPGRRSMNLSNAAAVAAYEVWRQ 150


>gi|188025415|ref|ZP_02958530.2| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
 gi|188023696|gb|EDU61736.1| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
          Length = 226

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 77/176 (43%), Gaps = 19/176 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAI 81
             N+  + R+     +  +        WP ++ +   SS+A ++  + +V    + + AI
Sbjct: 19  PHNVSAIVRSADAVGIHTIH-----AIWPDQQVKLSVSSAAGSNSWV-NVISHPSTEAAI 72

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + L        +++N    V    E A+   E I   Q   I+ G+E+ G++ + + L++
Sbjct: 73  SQL--------KSQNMQVLVTHLSEQAVDFRE-IDYTQPTCIMVGQEKKGISAKALELAD 123

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
             I  P+  +  SLN+S A  L+++E      ++   + +E +  + + +     +
Sbjct: 124 KHIIIPMVGMVQSLNVSVASALILYEAQRQRQLAGMYS-RETSLLSEQEQQQWLFE 178


>gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
 gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
 gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R]
          Length = 270

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 22/163 (13%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           AK  V+I  +VD     NIG + R+     +  + L        + +A   S  +  ++ 
Sbjct: 119 AKRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVS 175

Query: 70  SVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              +  +L   + DL F     A T    ++  S+  P          + +   + II G
Sbjct: 176 WTWIDGSLSR-LGDLGFRTAAMALT----DDSISIDDPV---------LKTEPKLAIIMG 221

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            E  GL  E I+ ++ ++  P++    SLN++ A  +  WE  
Sbjct: 222 TEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264


>gi|313157844|gb|EFR57254.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 227

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 21/153 (13%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSNLKEAIA 82
            G+N   + R    F + ++  V     + P+                VR   +  EA+A
Sbjct: 51  HGQNAAALIRHCEAFGVQEMHTVETLCRFEPNPDI----VRGTDQWVDVRRHPSTGEALA 106

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      I ATT    +                    +     ++FG E  G+++E IA
Sbjct: 107 ALRSAGYRIVATTPHREDVTPETFD------------VAAGPFALVFGTEHAGISDEVIA 154

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++  +  P+  +  SLN+S +  ++++   E 
Sbjct: 155 GADEFLRIPMCGMVESLNVSASAAILIYMLSER 187


>gi|238755588|ref|ZP_04616925.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238706188|gb|EEP98568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 230

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 18/174 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + Q+        WP+ +  +   +A        V+   ++ +A+ 
Sbjct: 30  PHNVSAVIRTADAVGIHQIH-----AIWPTTEMYTLLSAAAGSNSWVQVKTHPDIGDAVQ 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     +++          + A+   E I   +   I+ G+E+ G++ + +AL++ 
Sbjct: 85  HF--------KSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISKQALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
            I  P+  +  SLN+S A  L+++E       +   +    ++  TK E    L
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYH--RASSMLTKDEQQRLL 187


>gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
           12042]
 gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
           12042]
          Length = 244

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVR 72
            ++L   Q   N+G + R    F   Q  L++P      +EK   S+  A     I    
Sbjct: 101 TVVLDGVQDPGNVGTIIRTAVAFGFDQ-VLLSPDCADVYNEKCVRSTQGALFHIAISRTE 159

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +   L E       +  T               + A  L+E   S +N+ ++ G E  G+
Sbjct: 160 LIPALNELKELGVTVIGTA-------------LQGAQPLSELPVS-ENIAVVLGNEGQGI 205

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
               + + +      ++  F SLN++ A  + ++    
Sbjct: 206 RPATLDICDQRALIEMS-SFESLNVAVAAGICLYRYRR 242


>gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2M]
 gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2]
 gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD1]
 gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans ATCC 17616]
 gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD1]
 gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2]
 gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2M]
          Length = 247

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 17/174 (9%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  + V +NL  A+ +L                +    EA+  L +    G  V 
Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEASATLYDTKLDG-PVA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I+ G E  G+        + ++S P+     SLN+S A  + ++E +       
Sbjct: 194 IVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRAKG 247


>gi|25027214|ref|NP_737268.1| putative rRNA methylase [Corynebacterium efficiens YS-314]
 gi|23492495|dbj|BAC17468.1| putative rRNA methylase [Corynebacterium efficiens YS-314]
          Length = 173

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 22/176 (12%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P +     S     ++  +P +  N G   R         L LV P     +EK    
Sbjct: 8   IIPRSTIFPMSVPPLHVVFDNPVIPPNTGNAIRMCAGTG-AHLHLVEPLGFDLTEKHLRR 66

Query: 61  SANADCVIDSVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +      +  V V +N+++   A+    F + T A                      I  
Sbjct: 67  AGLDYHDLADVTVHANIEDCFGALPGRIFAFTTQATG----------------WFTDITY 110

Query: 118 GQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                ++FG E  GL +E I      A +  P+     S+N+S +  +  +E    
Sbjct: 111 QPGDALLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAVATYEAWRQ 166


>gi|152977823|ref|YP_001343452.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
 gi|150839546|gb|ABR73517.1| RNA methyltransferase, TrmH family, group 2 [Actinobacillus
           succinogenes 130Z]
          Length = 158

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +  I         + + +  F   L  K        R  SG    ++FG E  G+  
Sbjct: 61  KTFERFIE--------SEKPKRLF--ALTTKGGPAHSEVRFESGD--FLMFGPETRGIPM 108

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +        I  P+     S+N+S +V + V+E    
Sbjct: 109 SILDNMPMERKIRIPMTANSRSMNLSNSVAVAVYEAWRQ 147


>gi|293393635|ref|ZP_06637945.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
 gi|291423970|gb|EFE97189.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
          Length = 220

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 29/181 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+  V     WP+ + R+   SA       +V+    + EA+ 
Sbjct: 19  PHNVSAIIRTADAVGVHQVHAV-----WPTTRMRTLVSSAAGSNSWVNVKTHRTIGEAVG 73

Query: 83  DLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            L      I AT  +AR  +                      +   I+ G+E+ G++ E 
Sbjct: 74  HLKSQGMQILATNLSARAVDFRDIDYT---------------RPTCILLGQEKSGISEEA 118

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           + L++  I  P+  +  SLN+S A  L+++E       ++    +E +T   + +     
Sbjct: 119 LQLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYRREASTLEQEEQQRLLF 177

Query: 197 D 197
           +
Sbjct: 178 E 178


>gi|121603783|ref|YP_981112.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120592752|gb|ABM36191.1| RNA methyltransferase, TrmH family, group 2 [Polaromonas
           naphthalenivorans CJ2]
          Length = 159

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 39/170 (22%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G V R   N    +L LV P      +K    +       +  +V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGC-RLHLVEPLGFSMDDKHMRRA--GLDYHEYAQV--- 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------------II 124
                             R+         +          + Q  G            ++
Sbjct: 58  -----------------LRHASWPAFLESQQPPADRLFALTTQGAGSMYEARFLPGDWLV 100

Query: 125 FGRERWGLTNE---EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           FG E  GL  E     AL+  +   P+ P   SLN+S  V + V+E    
Sbjct: 101 FGSETKGLAPEVRQSFALARRL-KVPMLPGQRSLNLSNTVAVTVFEAWRQ 149


>gi|257467228|ref|ZP_05631539.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918357|ref|ZP_07914597.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692232|gb|EFS29067.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 257

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 64/155 (41%), Gaps = 21/155 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71
           IIL D Q   N+G + R +     + + L      + +EK   SS  +        ++ +
Sbjct: 109 IILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKI 168

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   LK+     + +   T+   ++   +             +   +    +FG E  G
Sbjct: 169 EIVDYLKK--QQYNIVV--TSLQEDSIPYM------------EMSLDERNAFVFGNEGHG 212

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ E + +++  +  P++    SLN++ A+ ++++
Sbjct: 213 VSKEFLDIADEKVIIPISGQAESLNVAMALGILLF 247


>gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
           15176]
 gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
           15176]
          Length = 257

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 16/167 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
           P L +SA+   + L   Q   N+G + R+   F    + L  P    P S K   SS  A
Sbjct: 102 PALLDSARRI-LALEGVQDPGNVGTLLRSAAAFGFDAVVL-GPGCAAPFSPKTLRSSMGA 159

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFS-GQNVG 122
              +  V    NL            T  R R    + LA     +  L+E        V 
Sbjct: 160 AGRLP-VVHTENLP----------GTLHRLRERGVTCLAAALYHSRPLDEEGRDFPAGVC 208

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           ++ G E  GLT+E +   +A +  P+     SLN   A  +++W   
Sbjct: 209 VVIGSEGQGLTDETVQACDAAVRIPMTDRVESLNAGVAGSVLLWHFR 255


>gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
 gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
          Length = 229

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 62/177 (35%), Gaps = 21/177 (11%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVR 72
           +LV+  +   N+  + R+     + +   V+    PR    + +      +     D   
Sbjct: 24  VLVEHVEKPHNLSAILRSCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRWVSLRDHADIST 83

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +LKE       +Y T     N        ++                 + G E+WGL
Sbjct: 84  AVHHLKE---RSFRLYGT-----NLGVDARDYRDCDFT--------GPCAFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           T E  AL +  I  P+  +  SLN+S A   +++E +     +    +  +  PA  
Sbjct: 128 TEEATALMDQAIFIPMRGMVQSLNVSVATATLLYEALRQRQAAGLAPLNGEGVPAEH 184


>gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 306

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 9   QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++ A+ P+++ L       N+G + R+   F    + +   R    +  A  +SA A   
Sbjct: 150 RDRAEHPLLVALDGITDPRNLGAIVRSTAAFGGHGVIITERRAASMTAAAWKTSAGAASR 209

Query: 68  IDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I   +V  NL  AI DL     F+        +    V  PK             + V +
Sbjct: 210 IPVAQVV-NLARAIDDLKKSGVFVLGL-----DMNGDVELPKLELAR--------EPVCL 255

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + G E  GL+       + I+S P++    SLN   A  + ++E     ++
Sbjct: 256 VVGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGVALYEVARTRML 306


>gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
          Length = 247

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 36/180 (20%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKA 57
           P L    K P  ++      V      N G +AR      +  + +  P  G    +  A
Sbjct: 88  PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVII--PVRGSVSVNADA 140

Query: 58  RSSSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
             +SA A   +   R   NL+  +     +    + AT               E      
Sbjct: 141 VKTSAGALHTLPVCR-EQNLRSTLQYLKDSGFRIVAAT---------------EKGDYDY 184

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      + II G E  G++ E +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 185 TKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312775|ref|ZP_06803512.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
          Length = 200

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   NIG + R      L ++ L+N      + KA  +   A   +    + +
Sbjct: 55  ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYI-T 113

Query: 76  NLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL E   IA L              K  L      +    + F   N  ++FG E  G+ 
Sbjct: 114 NLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIE 162

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +  +         P      SLN++QA  + ++E +   +
Sbjct: 163 DFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 199


>gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010704|ref|ZP_02275635.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           257]
 gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           257]
 gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 250

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   NIG + R      L ++ L+N      + KA  +   A   +    + +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYI-T 163

Query: 76  NLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL E   IA L              K  L      +    + F   N  ++FG E  G+ 
Sbjct: 164 NLAELKNIAKLQ-----------QRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIE 212

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +  +         P      SLN++QA  + ++E +   +
Sbjct: 213 DFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|302333521|gb|ADL23714.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 156

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 24/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           I+L  P++  N G +AR     N   T L L+ P      +K    +       +  ++ 
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTN---THLHLIKPLGFRTDDKMLKRA--GLDYWEFVNIT 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWG 131
              +++           TT    N    +L         + +     ++   IFG+E  G
Sbjct: 60  YHDSIEAFFE-------TT----NGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTG 108

Query: 132 LTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +  +E    +  +  P++    SLN+S    L+++E +   
Sbjct: 109 LPDWVKEKYQ-DTALRIPMSEHIRSLNLSNTAALLIYEALRQQ 150


>gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
           influenzae NT127]
 gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
           influenzae NT127]
          Length = 246

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R       T   +V P+D     +  AR  +  A 
Sbjct: 89  LANKQNPLLLVLDGVTDPHNLGACLRTADAAG-TVAVIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E     + S
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQRLGS 246


>gi|297184407|gb|ADI20523.1| predicted rRNA methylase (spou class) [uncultured alpha
           proteobacterium EB080_L58F04]
          Length = 154

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 17/158 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV P++  N G + R     NL +L L+ P     SEK    +         VR+  +
Sbjct: 7   IVLVAPEIPHNTGAIGRTCVALNL-ELILIKPYGFSLSEKTVIRA--GTRYWKHVRLCEY 63

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + +  + D         R        L  +E             +  ++FG E  GL +
Sbjct: 64  EDWQSFLED---------RQPAQDDLYLF-EEHGQQSFYAPVYKDDGYLVFGCESTGLPS 113

Query: 135 EE-IALSNAIISFPV-NPLFPSLNISQAVLLMVWECME 170
           E  +   + I   P+ NP+  SLN+S     ++++ M 
Sbjct: 114 EVMLGREDRIFHVPMRNPVVKSLNLSNVATAVIYQAMR 151


>gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 296

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L   +   N G V R         + L +      + KA  +S  + 
Sbjct: 125 EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 184

Query: 66  CVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +        + +A+     A +  + A  A +R+    +           ++   G  
Sbjct: 185 FHLPVAVGVP-VGQAVTGLRDAGVRLLAADGAGDRDLDDEL-----------DKGTMGGP 232

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
              +FG E WGL  E  AL++A++  P++    SLN++ A  + ++        +  
Sbjct: 233 TAWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRAAGG 289


>gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus
           capsulatus str. Bath]
          Length = 250

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 11/160 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G   R      +  L +   +    +      ++ A   +  V   +NL
Sbjct: 102 VLDHVQDPHNLGACLRTCDAAGVKGLVVTKDQSVGLTPTVAKVASGAAETVP-VYRVTNL 160

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              +             +  +  V A  EA   L E       + ++ G E  GL     
Sbjct: 161 ARCLDRF---------KQRGYWVVGAAGEAERTLYELDLR-LPLVVVMGAEGVGLRRLTR 210

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
              + ++  P+     SLN+S A  ++++E M      + 
Sbjct: 211 ERCDFLLRIPMVGGVESLNLSVATGIVLYEVMRQRSRPAP 250


>gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 178

 Score = 65.9 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 10/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      ++IL + +   NIG V R+   F + ++ L       P +  + ++  A   +
Sbjct: 21  KAEKTPIIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGATDTV 80

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGR 127
                  N    +  L        +        +   E A +LN+ +    Q   ++FG 
Sbjct: 81  TW-EYVENTVSLVKKL--------KAEGIKVYAIEQAEGATMLNDFVPEKHQTTAVVFGN 131

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  G+  E ++ S+A+I  P      SLNIS +  +++W+   
Sbjct: 132 EVKGVQQEVVSASDAVIEIPQLGSKHSLNISVSTGVVLWDLFS 174


>gi|332671773|ref|YP_004454781.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332340811|gb|AEE47394.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 154

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           +   +P++  N G   R       T L LV P  G+   +AR   A  D   +  V V +
Sbjct: 4   VAFFEPRIPGNTGNAIRMAAGTGAT-LHLVEPL-GFDLSEARLRRAGLDYHDLAHVVVHA 61

Query: 76  NLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +A+ D+     + A T                A      +   ++  ++FG E  GL
Sbjct: 62  SF-DALLDVLPGSRVLAFTT--------------QATTSFADVGYREDDVLLFGPEPTGL 106

Query: 133 TNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + +A       +  P+ P   S+N+S A  +  +E    
Sbjct: 107 PADVLAHPRVTDQLRIPMLPGRRSMNLSNAAAVATYEAWRQ 147


>gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium
           ATCC 15444]
          Length = 269

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 12/160 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L       N+G + R+   F    L L   R+  P +     S+A A   +  +R   N
Sbjct: 121 VLDQVSDPHNLGAIFRSAAAFGFEGLVL-QTRNAPPITGIVAKSAAGAIETVTEIRAV-N 178

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +  A+  L            +F +V    E+   L+E +     V I+ G E  GL    
Sbjct: 179 IARALEQL---------AEADFHTVGLAGESTRSLDEAVKGAAKVAIVLGAEGSGLRPAV 229

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + +   P+     SLN+S A  +  +E    S  + 
Sbjct: 230 AKACSELARIPIAAQMESLNVSNAAAIAFYEASRGSFPAR 269


>gi|313204822|ref|YP_004043479.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
           WB4]
 gi|312444138|gb|ADQ80494.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
           WB4]
          Length = 177

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +  AK P +++L + +   N+G V R    F +  + L       P  +   ++  A+
Sbjct: 16  EFKEKAKTPLIVVLDNVRSLHNVGSVFRTADAFLVEAVYLCGITSTPPQAEIHKTALGAE 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +   + F +  +A+ +L     T         S L P+         +       ++ 
Sbjct: 76  NTVTW-KYFEDTHQALEELKAQAYTVFAIEQAAGSTLLPEL-------ALNPAMKYAVVL 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+    +   +  I  P      SLN+S    +++WE   
Sbjct: 128 GNEVKGVQQSVVDACDGCIEIPQFGTKHSLNVSVTGGIIIWEFFR 172


>gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
 gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
          Length = 178

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + ++S K P+I IL + +   NIG V R    F + ++ L       P +  + ++  A
Sbjct: 16  EEFKDSPKTPLILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGA 75

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQNV 121
              +D   V + L E + DL                V++ ++A   ++ +       Q  
Sbjct: 76  TQTVDWAYVENTL-EVVKDLQ----------QQGVKVMSIEQAEDSISLKDFNPRQNQLY 124

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++ G E  G+  E +  S+ ++  P      SLNIS    + VW+ M 
Sbjct: 125 ALVLGHEVKGVQQEVVDQSDGVLEIPQLGTKHSLNISVTTGICVWDFMS 173


>gi|269126608|ref|YP_003299978.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311566|gb|ACY97940.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 186

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    F +  L L           A  ++   + ++   +     ++A+ + 
Sbjct: 40  PFNVGSIVRTCAVFGVEHLWLAGNTTPPTHRNAGKTALGTERLVPWSQ-AGTPQQAVREA 98

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
           H        ++      L     AI L+     G +V +  G E  G +   +  ++A+ 
Sbjct: 99  H--------DQGLRVIALELAGGAIPLHRAPLEG-DVCLAVGGEDHGCSPALLEAADAVA 149

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             P      SLN++ A  + + E       +  +++ 
Sbjct: 150 YIPQIGRVGSLNVAVATAIALAEARRREWAALGEDLP 186


>gi|120555648|ref|YP_959999.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325497|gb|ABM19812.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
          Length = 244

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 73/181 (40%), Gaps = 17/181 (9%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP       Q+ N+ +  + +L D      N+  + R+   F L  + +V P++G+   
Sbjct: 1   MTPERLARIKQVLNTRQPDLRVLTDQVHKPRNLSAIIRSCDAFGLANMHVVWPKEGF--- 57

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +A   +A       +      +  A+ +L       A+    + + L+ +  A+   E  
Sbjct: 58  RAFRKTAGGSFHWVTTHTHPTMDNAVTELK------AQGHKLYAAQLSDR--AVDFREVD 109

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++     II G E  G+       ++  I  P+  +  SLN+S A  +++ E      ++
Sbjct: 110 YTV-PCTIIMGNEVDGVNPVTAEQADEHIVIPMMGMVESLNVSSACSIILSEAQRQRKLA 168

Query: 176 S 176
            
Sbjct: 169 G 169


>gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46]
 gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46]
          Length = 270

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 22/163 (13%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           AK  V+I  +VD     NIG + R+     +  + L        + +A   S  +  ++ 
Sbjct: 119 AKRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVS 175

Query: 70  SVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              +  +L   + DL F     A T    ++  S+  P          + +   + II G
Sbjct: 176 WTWIDGSLSR-LGDLGFRTAAMALT----DDSISIDDPV---------LKTEPKLAIIMG 221

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            E  GL  E I+ ++ ++  P++    SLN++ A  +  WE  
Sbjct: 222 TEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFWELR 264


>gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
 gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
          Length = 183

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 73/172 (42%), Gaps = 14/172 (8%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P V++L D +   N+G V R+   F +  + L       P+ +   ++   +
Sbjct: 19  EFKEAKKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEGIYLCGITATPPNAEIHKTALGGE 78

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNV 121
             +   R FS  ++A+ +L         + + F   +   E +I L +    +    +  
Sbjct: 79  DSVAW-RYFSRAEDAVTELQ--------SHDYFVYSIEQVEGSIKLQDLTIDKTSQAKGY 129

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++FG E  G+  E + +S+  +  P      SLN+S    +++WE     +
Sbjct: 130 AVVFGNEVKGVKQEVVNMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFTRKLL 181


>gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 245

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+      +++L       N+G   R      +  + +   +    +  AR  +  A   
Sbjct: 89  LEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNAVIVTKDKSAQLNSTARKVACGAAEN 148

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +  +RV +NL   + +L          R+N   V    E    L +   +G  + ++ G 
Sbjct: 149 VPLIRV-TNLARTLRELQ--------KRHNVWVVGTAGETTETLYQTKLTGA-LALVMGA 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 199 EGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQRL 244


>gi|227541826|ref|ZP_03971875.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182269|gb|EEI63241.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 161

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++   P +  N G   R         L L+ P      ++    +      +  V V  +
Sbjct: 11  VVFEHPVIPPNTGNAIRMCAGTG-AHLHLIRPLGFDLEDRHLRRAGLDYHDLARVTVHDS 69

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L   +A L    ++A T    N    V                     ++FG E  GLT+
Sbjct: 70  LDACLATLPGARVFAFTGHCSNMLFDVRF--------------APGDVLLFGTEPTGLTD 115

Query: 135 EEIALSNAI---ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +   + +   +  P+     S+N+S A  +  +E    
Sbjct: 116 EAMNH-DRVTQKVRIPMLEGRRSMNLSNAAAVATYEAWRQ 154


>gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu]
          Length = 247

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  + V +NL  A+ +L                +    EA+  L +    G  V 
Sbjct: 145 GAADTVPYITV-TNLARALREL---------KEAGVWIIGTSDEASATLYDTKLDG-PVA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  G+        + ++S P+     SLN+S A  + ++E +    V +
Sbjct: 194 LVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRRVKA 247


>gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
 gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_23]
 gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
 gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_23]
 gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 247

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 64/180 (35%), Gaps = 36/180 (20%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57
           P L    K P  ++      V      N G +AR      +  + +  P  G    +  A
Sbjct: 88  PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVII--PVRGSASVNADA 140

Query: 58  RSSSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
             +SA A   +   R   NL+  +     +    + AT               E      
Sbjct: 141 VKTSAGALHTLPVCR-EQNLRSTLQYLKDSGFRIVAAT---------------EKGDYDY 184

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      + II G E  G++ E +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 185 TKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|298372824|ref|ZP_06982814.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275728|gb|EFI17279.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 182

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 15/168 (8%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +  AK P++ IL + +   NIG V R    F + ++ L       P+ +   S+  A 
Sbjct: 17  EYRRMAKIPLVLILDNVRSMHNIGAVLRTADAFCIEKVVLCGITATPPNNEIHKSALGA- 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA---AIVLNERIFSGQNVG 122
              +    +    EA   +  +       R+    VLA ++      + +  I       
Sbjct: 76  ---EFSVRWEYSPEAQIPVRTL-------RDEGYRVLAVEQTQDSMPLDSLHIEGAAKYA 125

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++FG E  G+    I L +  +  P      SLN+S A  ++VW   E
Sbjct: 126 LVFGNEVSGVEQATIDLCDGSVEIPQYGTKHSLNVSVACGIVVWTFFE 173


>gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
           13280]
 gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 19/175 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           ++         +   V++L       N G + R+        + + N R    +     +
Sbjct: 143 LSDIIAAAPAGSPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKT 202

Query: 61  SANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           SA A   +   +V  N+  A+ DL     ++   T              E A  +     
Sbjct: 203 SAGAVMHLPIAQV-PNIARALEDLKSAGFWVGGAT--------------EHAEDVCWDAP 247

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               V ++ G E  G++   +   +     P      SLN++QA   + +E M  
Sbjct: 248 FEGRVALVMGSEGDGISRLVLDTCDFTTKLPQRGETESLNVAQAATALCFEWMRR 302


>gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72]
 gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72]
          Length = 263

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 19/163 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L   Q   N+G + R      +  + L        S +   +   A   +  +   ++
Sbjct: 117 VVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFHL-RIHECTD 175

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L   +A         A  AR ++ +++ L                  V  +FG E  GL+
Sbjct: 176 LAGLLATYPGAVLATALDARAKSLYETDLR---------------GPVAWLFGAEGQGLS 220

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               AL+   +  P+     SLN++ A  + ++E         
Sbjct: 221 EAAKALATGTVLIPMAAGIESLNVAAAAAVCLFEQRRQRAARG 263


>gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 254

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 16/164 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73
           ++IL       NIG + R    FN+  L L  P +  PSE A    +++ A  +I  + V
Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIIPLIYV 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132
            +           I  T    +            A    + I S +    IIFG E  G+
Sbjct: 162 TN-----------IVKTMQYLKKVGYWCYGFDCNAKENIDEIKSFEKKRVIIFGSEEKGM 210

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + ++  P++    SLN+S A  + ++     +  S+
Sbjct: 211 RRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 254


>gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 266

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 10/172 (5%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P  P         V++L      EN+G + R           L  PR   P  +     
Sbjct: 103 APLDPARLLDEARIVVVLEGVNDHENLGSIFRNCAALG-ADAVLFGPRCSDPLYRRAVRV 161

Query: 62  ANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +    ++     F++L  A    D   + A     R      L P   + V        +
Sbjct: 162 SMGHVLL---VPFAHLPAAGWPGDGLALLA----ERGFRTVALTPSGESTVAQALAGRPE 214

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            V ++ G E  GL+ E +A ++   + P++    SLN++ A  + ++ECM  
Sbjct: 215 RVALVVGAEGPGLSAEMLAAADVRAAIPMHRGTDSLNVATATAVALYECMSQ 266


>gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J]
 gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J]
          Length = 260

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 16/167 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
           +L  +     +IL   Q   N+G + R      +     + P   +  S K   ++  A 
Sbjct: 106 KLPQTIDADCVILDGIQDAGNVGSILRCAAAAGVRD-VFMTPGCAFAWSAKTLRAAMGAH 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++           +    F    +  +R     +LA    A      +     VG +F
Sbjct: 165 FHLN----------IVEHCTFQ---SVHSR-LRVPLLATSSHAKQAVFDVPLSSPVGWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++ E ++     ++ P      SLN++ A  + ++E +   
Sbjct: 211 GNEGAGVSQEWLSAVTTPVTIPQPGGMESLNVAAAAAICLFEAVRQR 257


>gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
           Eb661]
 gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
           Eb661]
          Length = 245

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 28/176 (15%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S   P ++IL       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PDLLESLDSPFLLILDGITDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAS 143

Query: 63  NADC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            A        V +  R    L++A     +I  T                 A     +  
Sbjct: 144 GAAEHVPLITVTNLARTMRVLQDA---NVWIVGTAG--------------EADHNLYQSK 186

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + ++ G E  G+        + +IS P++    SLN+S A  + ++E +   
Sbjct: 187 MTGPMALVMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLFEAVRQR 242


>gi|299145105|ref|ZP_07038173.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
 gi|298515596|gb|EFI39477.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
          Length = 175

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A + +   K P V++L D +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
            A+  +D  +  +N  +A+ +L        +N       +   E +I+ +E ++   +  
Sbjct: 73  GAEFTVDW-KYVNNAVDAVDNL--------KNEGYIVYSVEQAEGSIMFDELQLDKTKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AIVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172


>gi|317494702|ref|ZP_07953114.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917304|gb|EFV38651.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 230

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 20/175 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  V R      + Q+  V     WP +  R+    +A ++  + SV+   ++  A+
Sbjct: 30  PHNVSAVIRTADAVGVHQVHAV-----WPGKTMRTMVSTAAGSNSWV-SVKTHPDISSAV 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           +        T +              A+   E I   +   I+ G+E++G+T E +AL++
Sbjct: 84  S--------TLKAEGMQILATNLSSTAVDFRE-IDYTRPTCILMGQEKYGITAEALALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
             I  P+  +  SLN+S A  L+++E       +     + +++P +  +    L
Sbjct: 135 QDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMY--QREHSPLSDEDQQRLL 187


>gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 276

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 12/160 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G ++I V+     N+G + R         + L        + KA  SSA +        
Sbjct: 127 SGCLVIPVECNDPGNVGTIVRMTDALGAGAVILAGDSVDPLNSKAVRSSAGS-------- 178

Query: 73  VFSNLKEAIADLHFIYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           VF        D+  +     R R   F ++    + A+ L         V  +FG E  G
Sbjct: 179 VFHTPVARERDIDVVV---ERVREAGFTTLATAMDGALTLGVDALPDGPVAWLFGNEAHG 235

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+ E  A + A ++ P+     SLN++ A  + +WE +  
Sbjct: 236 LSEEITASAGASVAIPIKGEAESLNLATAAAMCLWETVRG 275


>gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
 gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
          Length = 276

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 6   PQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           P L ++ K  GPV++L       N+G + R+   F    + +   R+    E+  + +  
Sbjct: 120 PSLNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAA-MVIAQERNAP--EEGGALAKA 176

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A   ++ + +   +  A A +    A           +         L+      +   +
Sbjct: 177 ASGALERIPLLRTVNIARALIALKAA-------GLWVMGLDAAGLSHLSRDAIGNRRAAL 229

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + G E  GL        + ++S P+     SLN+S A  + ++E + 
Sbjct: 230 VLGAEGEGLRRLTRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276


>gi|297621748|ref|YP_003709885.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
 gi|297377049|gb|ADI38879.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
          Length = 154

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 23/160 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  PQ+ +N G + R       + L LV P     +++    +       +  +++V 
Sbjct: 4   VVLYQPQIPQNTGNIVRTCSVTG-SDLYLVAPLGFQITDRWLKRA--GLDYWEGVNMQVL 60

Query: 75  SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            NL+E +      F + ++   R   K      +                ++FG E  GL
Sbjct: 61  ENLEEVLESQQTPFYFFSSHAKRPYSKISFTTDDW---------------LVFGSETHGL 105

Query: 133 TNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +       IS P+      LN++ +V + V+E    
Sbjct: 106 PKTFVEKWPEKFISLPMIEGKRCLNLATSVGIAVYEAYRQ 145


>gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
 gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
          Length = 247

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 21/170 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANAD 65
           LQ      ++IL       N+G   R      +T   +V P+DG    S  AR  +  A 
Sbjct: 91  LQRQDSPLLLILDGVTDPHNLGACLRTADAAGVT--AVVVPQDGAAGLSPVARKVACGAA 148

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  VRV +    L +  A   ++  T+ +                 L E+ FSG  V 
Sbjct: 149 DTVPFVRVTNLARTLGQLKAAGVWLIGTSDKASRT-------------LFEQDFSG-PVA 194

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I+ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 195 IVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGICLFEAVRQR 244


>gi|72382186|ref|YP_291541.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. NATL2A]
 gi|72002036|gb|AAZ57838.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. NATL2A]
          Length = 166

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 29/168 (17%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +   P + L +P++ +N G + R    FN++ L ++ P      +K    +         
Sbjct: 5   NRTRPRVALFEPRIPQNTGTIGRTCLAFNMS-LDIIKPTGFSFEDKYLKRA--GLDYWPH 61

Query: 71  VRV--FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V V  + + ++         I A T ++ N              ++  I+   ++ ++FG
Sbjct: 62  VDVHLYESFEQYKNSFKNSRIIALTKKSNNL-------------ISNIIYKDTDI-LLFG 107

Query: 127 RERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
           RE  GL    I     +   P+             SLN+S A  ++ +
Sbjct: 108 REDTGLPESIINKCEIVAGIPMPGGENQLKTGGVRSLNLSVASGIVCY 155


>gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09]
          Length = 246

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 32/162 (19%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSNL 77
           VDPQ   N+G   R      +    L+ P+D     +   R  +      +  V V +NL
Sbjct: 107 VDPQ---NLGACFRVADAMGVD--ALICPKDNAVGLNATVRKVACGGAESVPFV-VVTNL 160

Query: 78  KEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-- 131
              I  L     F+Y T               + A    ++     ++ ++ G E  G  
Sbjct: 161 ARTIRYLKNSNVFVYGT--------------DDNANKSLQKTNFKGSIALVMGSEGKGMR 206

Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            LTNE   L + I S P+     SLN+S A  + ++E     
Sbjct: 207 RLTNE---LCDDIFSIPMMGQVESLNVSVASGICLYEINRQR 245


>gi|24213347|ref|NP_710828.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45658771|ref|YP_002857.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194095|gb|AAN47846.1|AE011251_8 rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45602015|gb|AAS71494.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 153

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SN 76
           L  P++  N G +AR        +L +V       SEKA   +       D V+++  S+
Sbjct: 7   LYRPEIPPNTGNIARLCVALG-AELHIVGQASFDLSEKAARRA--GLDYWDKVKIYFHSS 63

Query: 77  LKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L+E      +  A  +  N                    +   +    +FG E  G+  E
Sbjct: 64  LEE------YKVALPSGTNLYLISIY------GKRSYTNVSYRKGDAFLFGNETSGVPLE 111

Query: 136 EIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                +   I+  P+      LN+S +V ++ +E M  
Sbjct: 112 IKNSWDQERILKIPMEDSSRCLNLSNSVAVISYEAMRQ 149


>gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 299

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 11/177 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G +I+L   ++  NIG + R  +      + LV+      +++    ++    V     
Sbjct: 115 TGDIIVLDGVKIVGNIGAIVRTSFALGAAGIVLVDSDLATIADRRLVRASRG-YVFSLPI 173

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V ++  +AIA            R     V    E  + ++E   + + + ++ G E+ G 
Sbjct: 174 VLASRADAIAHFR---------RTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGT 224

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE-KNVKEQNTPAT 188
           +    ++++  +S P+NP   SLN+S    + ++E    ++      +    + PA 
Sbjct: 225 SRSFESIASHSVSIPINPAAESLNVSVCAGIALYERRHWNLADRRSPHAPRADRPAA 281


>gi|167946047|ref|ZP_02533121.1| rRNA methyltransferase, TrmH family protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 64

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           +  +  T+AR R+   +VL P+E    + E    G+ V ++FGRE  GL+NEE+  
Sbjct: 10  VGLVIGTSARERSVAWAVLNPRECGGQVIEEAAVGE-VALVFGRENSGLSNEELDR 64


>gi|118466307|ref|YP_883469.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium 104]
 gi|254776762|ref|ZP_05218278.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|118167594|gb|ABK68491.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium 104]
          Length = 154

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 21/165 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
            V P++  N G   R        +L LV P     SE     +      + SV V ++L 
Sbjct: 6   FVSPRIAPNTGNAIRTAAATGC-ELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVHASLA 64

Query: 79  ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              +A+     +  T+                A      +       ++FG E  GL   
Sbjct: 65  AAWDALTPARVVAFTS---------------HAPASFAELRYRPGDVLMFGPEPTGLDAA 109

Query: 136 EIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +A  +    +  P+     SLN+S A  + V+E       +   
Sbjct: 110 TLADPHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQHGYAGAT 154


>gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 258

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 12/159 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL       NIG + R    FN+  L L  P +  PSE A S +  A   +D   +  
Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PYNHSPSENA-SIAKAASGTLD---IVP 157

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTN 134
                +  +  +  T    +            A    + I S G+ + IIFG E  G+  
Sbjct: 158 -----LIHVTNVVKTMEYLKKVGYWCYGFDSNAKENIDEIKSFGKKIVIIFGSEGKGMRR 212

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                 + ++  P++ +  SLN+S A  + ++     ++
Sbjct: 213 LVKENCDYLLKIPMSNVIDSLNVSNAAAIGLYSVYTKTL 251


>gi|21222245|ref|NP_628024.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|5102788|emb|CAB45203.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 261

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 20/170 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +   + PV++L  P+   N G V R    F  T +      D W     R  +      +
Sbjct: 112 RTPRRAPVVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 166

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
               V   L+ A                     L   +        +    +  + FG E
Sbjct: 167 HFATVVERLEVA---------------GLPPGPLFALDPEGEDIRGLELPDDALLAFGSE 211

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           R GLT E  A ++ +++ P+ P   S N++ +V + ++            
Sbjct: 212 RSGLTPELRARADRLVALPMRPQVSSYNLATSVAMTLYHWSAGGGAPRVP 261


>gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5]
 gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum
           JF-5]
          Length = 276

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 6   PQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           P L ++ K  GPV++L       N+G + R+   F    + +   R+    E+  + +  
Sbjct: 120 PSLNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAA-MVIAQERNAP--EEGGALAKA 176

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A   ++ + +   +  A A +    A           +         L+      +   +
Sbjct: 177 ASGALERIPLLRTVNIARALIALKAA-------GLWVMGLDAAGLSHLSRDAIGNRRAAL 229

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + G E  GL        + ++S P+     SLN+S A  + ++E + 
Sbjct: 230 VLGAEGEGLRRLTRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276


>gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
 gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
          Length = 245

 Score = 65.9 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   +   RV +  
Sbjct: 97  ILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYVPVARVTNLA 156

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ +++++S+                   + ++ G E  G+  
Sbjct: 157 RTIDELKERGVWIVGTDAKAKDDYRSL--------------DGTMPLALVIGSEGKGIGR 202

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +   + +I  P+     SLN S A  L+++E         E
Sbjct: 203 LILEKCDFLIHLPMRGHVTSLNASVAASLLMYEVYRKRYPQGE 245


>gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
 gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
          Length = 281

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 10/150 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R+   F +  + L        + ++  +S  A   +   +       A A  H 
Sbjct: 137 NIGALFRSAAAFGVDGIILNASCADPYNRRSVRTSMGAVLSLPWAQ------AASATSHT 190

Query: 87  IYATTA---RNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             A TA    +        A  + A+ LN  ++ S     + FG E WGL+ E  A  + 
Sbjct: 191 WAADTACVLSSHGFVNIACALDDNAMSLNAVQMQSFSKKALWFGSEGWGLSQEARAACDM 250

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  P+     SLN++ +  +  WEC  ++
Sbjct: 251 SVMIPMQRGIDSLNVAASSAVFFWECARSA 280


>gi|302833377|ref|XP_002948252.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
           nagariensis]
 gi|300266472|gb|EFJ50659.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
           nagariensis]
          Length = 155

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++LV PQ+ +N G VAR         L LV P      ++    +       D+V V   
Sbjct: 1   VVLVHPQIPQNTGNVARTCAATAAP-LHLVGPLGFQLDDRKLKRA--GLDYWDAVAVNTH 57

Query: 75  SNLKEAIADLH------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           S+     A          + A T      +       +    L            +FG E
Sbjct: 58  SSWDAFFAFFQQLPNPKRLVAFTVYGDKYYAGPEFSYQPGDWL------------VFGAE 105

Query: 129 RWGLT----NEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMEN 171
             GL     ++ +A    ++  P+      S+N+S AV + ++E +  
Sbjct: 106 TSGLPPKAHSDVLASGGCLVKIPIRDMHVRSINLSVAVGVGLFEAIRQ 153


>gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
          Length = 267

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+   +I  +VD     NIG + R+     +  + L        + +A   S  +  +I 
Sbjct: 119 ARRIAVIEGVVDTT---NIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIP 175

Query: 70  SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +  +  E   +       A T ++ +    +L              +   + I+ G 
Sbjct: 176 WAWLDGSPNELHKLGFRTVAMALTEKSISIDSPIL-------------ATEPKLAIVMGT 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E  GL NE I  ++ ++  P+     SLN++ A  +  W+  
Sbjct: 223 EGDGLRNETITEADYVVRIPMANGVDSLNVAAASAIAFWQLR 264


>gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           chloromethanicum CM4]
 gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           chloromethanicum CM4]
          Length = 268

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81
             N+G + R    F +T   +V      P+     A+S+S   + V   + +  NL EA+
Sbjct: 128 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 183

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T   R   +  L     A    + +   +   ++ G E  GL        +
Sbjct: 184 --------ITLGERGFTRIGLDSD--AGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCD 233

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            ++         SLN+S A  + ++    +S  ++
Sbjct: 234 LLVRIDATGAIRSLNVSNAAAITLYALTRSSGTAA 268


>gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
           11170]
 gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
           11170]
          Length = 348

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 17/168 (10%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             GP ++  L       NIG V R+   F + +  +V  +D    E+  + + +A   ++
Sbjct: 194 IPGPSVVAILDQVSDPHNIGAVLRSAAAFGI-RAVVV--QDRHSPEETGTLAKSASGTLE 250

Query: 70  SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            V +    NL +A+              + F        +A          +   ++ G 
Sbjct: 251 RVPLVRAINLSQALDTF---------KEHGFWCA-GLDASAETTLAEAALPERCVVVLGS 300

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           E  GL        + ++   ++    SLN+S A  +  +E     +  
Sbjct: 301 EGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVTFYELSGRGLRP 348


>gi|332292582|ref|YP_004431191.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170668|gb|AEE19923.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 150

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRVF 74
           I+L++P++  N G + R        +L LV P      +     +           V+ +
Sbjct: 4   IVLINPEIPNNTGNIGRLALGSGC-KLHLVKPFGFEIDDTRLKRA--GLDYWQHLDVQYY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N ++      F       +         P E            +++ ++FG+E  GL  
Sbjct: 61  DNTEDFFNKNAFAKMAFLSSHGTKSHYDIPFE------------EDLFLVFGKESKGLPK 108

Query: 135 EEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           E      + +   P+ +    SLN++ AV ++ +E +  
Sbjct: 109 EITEKHPDQLYKIPLFSEHIRSLNLANAVGIVAYEGIRQ 147


>gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
           74]
 gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
           74]
          Length = 276

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 27/158 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA-- 82
           N G +AR      +  + +        +  A  +S+ A   ++ + V    +L E +   
Sbjct: 132 NFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSGA---LNHISVCREPDLTETVKYL 188

Query: 83  ---DLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               +  +  T  +AR+     + L                  + II G E  G++ E +
Sbjct: 189 QESGITVVACTEKSARDLYERTTDLT---------------GPMAIIMGSEEDGISPELL 233

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            + +  +  P+     SLN+S A  ++++E +    + 
Sbjct: 234 RMVDTHVKIPLLGAVGSLNVSVATGVILYEAVRQRSLP 271


>gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 267

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+   +I  +VD     NIG + R+     +  + L        + +A   S  +  +I 
Sbjct: 119 ARRIAVIEGVVDTT---NIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIP 175

Query: 70  SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +  +  E   +       A T ++ +    +L              +   + I+ G 
Sbjct: 176 WAWLDGSPNELHKLGFRTVAMALTEKSISIDSPIL-------------ATEPKLAIVMGT 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E  GL NE I  ++ ++  P+     SLN++ A  +  W+  
Sbjct: 223 EGDGLRNETITEADYVVRIPMANGVDSLNVAAASAIAFWQLR 264


>gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
 gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
          Length = 255

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 20/174 (11%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P +    + P+I IL       N+G +AR      +  + +        +  A  +SA A
Sbjct: 97  PAVYEKGETPLILILDGITDVRNMGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAGA 156

Query: 65  DCVIDSVRVFSNLKE---AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              I   R   NL +    + +    I A T              E    L         
Sbjct: 157 LFTIPVCR-HPNLHKTALFLQECGLQIVACT--------------EKTNDLIYAPDYTTP 201

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             I+ G E  G++NE + ++N +   P+     SLN+S +  ++++E +    +
Sbjct: 202 TAIVMGAEDEGISNEIMRMANHLAKIPMIGEISSLNVSVSAGVILYEAIRQRTL 255


>gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT]
 gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT]
          Length = 265

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L + +   N+G + R      +  + +   R+   +     +SA A   +   +V +
Sbjct: 118 ILVLDEIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKV-A 176

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI ++                  A  +      +  F G  V ++ G E  G++  
Sbjct: 177 NINRAIDEI---------KERGIWVYGADMDGENYCFQTNFKGA-VALVIGSEGKGISKL 226

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                + +I  P+     SLN S A  +M++E ++ ++ 
Sbjct: 227 TKQKCDVLIKIPMVGKITSLNASVAAGIMMYEVLKQNME 265


>gi|115372384|ref|ZP_01459693.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310819547|ref|YP_003951905.1| tRNA (guanosine-2'-o-)-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370597|gb|EAU69523.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392619|gb|ADO70078.1| tRNA (Guanosine-2'-O-)-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 24/187 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVF 74
            ++L   +   N+  V R      + ++ +V NP   +        +   D  +D V+++
Sbjct: 42  TVVLDRLEDSFNMAAVLRTCEAMGVQEVHVVINPEAPFLPNS--RVAQGCDKWLD-VKLY 98

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               E    L          R       A +E A  L    F    V I+FG ER+G++ 
Sbjct: 99  KTFAECREHLQ--------ERGFALYASAIREGATSLYSMRFD-SKVAIVFGNERFGVSE 149

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVL-----LMVWECMENSIVSSEKNVKEQNTPATK 189
           + +A  +     P+     S+NIS A       +M W       +    ++ E+   A +
Sbjct: 150 DVLAGVDGTFWIPMRGFSQSINISAAASACVSRVMAW---REEHLGKVGDLTEEEAQALR 206

Query: 190 GELLSFL 196
                F 
Sbjct: 207 ---ERFY 210


>gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40]
 gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40]
          Length = 248

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 23/168 (13%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSV 71
             +++L       N+G   R+        L +  P+D     +E AR  +  A   +  +
Sbjct: 98  PLIVVLDGVTDPHNLGACLRSADAAGAHALIV--PKDNSVGLTEVARKVACGAADNVP-L 154

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            V +NL   +  +     ++  TT    +  KS+         +           I+ G 
Sbjct: 155 IVVTNLARCLKKMQEQGLWVAGTTG---DTDKSIYDVDLTGPRV-----------IVMGA 200

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           E  G+        + ++  P+     SLN+S A  ++++E +      
Sbjct: 201 EGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLFEVVRQRQAK 248


>gi|283457724|ref|YP_003362311.1| putative rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283133726|dbj|BAI64491.1| predicted rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 224

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 56/159 (35%), Gaps = 29/159 (18%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLK-- 78
           P++  N G   R        +L LV P  G+  + A    A  D   +  V V   L+  
Sbjct: 78  PEIPGNTGNAIRLAAITG-AELHLVKPL-GFNFDDAHLRRAGLDYHDLAVVTVHETLEDA 135

Query: 79  -EAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            EA+A +  F + TTA                               +FG E  GL   E
Sbjct: 136 WEALAPERVFAFTTTASTSYADIEYR----------------PGDVFMFGPESVGLP-AE 178

Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171
           +   +  +S     P+ P   SLN++ +  + V+E    
Sbjct: 179 VQQ-DPHVSERVKIPMKPGRRSLNLANSASIAVFEAWRQ 216


>gi|188532205|ref|YP_001906002.1| tRNA guanosine-2'-O-methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188027247|emb|CAO95086.1| Putative tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 231

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP  + R+   SA        V+   ++ +A++
Sbjct: 30  PHNVSAVIRTADAIGVHEVHAV-----WPGSRMRTMVSSAAGSNSWVQVKTHRSIADAVS 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     + +N         E A+   E +   +   I+ G+E+ G+T E + L++ 
Sbjct: 85  --------CLKGQNMQILATHLSEKAVDFRE-VDYTRPTCILMGQEKTGITQEALELADR 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +E +   ++ + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLREESSLEYSEQQRLLF 188


>gi|172056702|ref|YP_001813162.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171989223|gb|ACB60145.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium
           sibiricum 255-15]
          Length = 157

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           +++  P++ +N G ++R       + L L+ P      +K    +       +   VR  
Sbjct: 5   VVMYQPEIPQNTGNISRTCAAT-HSVLHLIRPLGFSTDDKQLKRA--GLDYWEFVDVRYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
            +L+E + D H            F  +    E      +     ++   +FGRE  GL  
Sbjct: 62  DSLEE-LWDKH--------PDGTFYYITKYGEKYPSQVDLSNVEEDYFFVFGRETKGLPL 112

Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +E +      I  P + L  SLN+S    ++V+E +   
Sbjct: 113 NVIDENLERC---IRLPQSNLVRSLNVSNTAAIIVYEALRQQ 151


>gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 235

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 75/180 (41%), Gaps = 27/180 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAI 81
             N+  V R      + Q+        WP +  R   SS+A ++  +  V+  S +++AI
Sbjct: 30  PHNVSAVIRTADAIGIHQIH-----AIWPDQSLRTQLSSAAGSNSWV-QVQTHSTIQQAI 83

Query: 82  A----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                D   + AT   ++              V   +I   +   II G+E+ G++ + +
Sbjct: 84  EQFKSDGMQVLATHLSDK-------------AVDFRQIDYTKPTCIIMGQEKKGISKQAV 130

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           AL++  I  P+  +  SLN+S A  L+++E      +      +E++  + + +     +
Sbjct: 131 ALADHDIIIPMAGMVQSLNVSVASALILYEAQRQRQLVGMYQ-REESILSEEEQQKLLFE 189


>gi|239917979|ref|YP_002957537.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665]
 gi|239839186|gb|ACS30983.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665]
          Length = 186

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 48/197 (24%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P  P+ +       I+L+ P++  N G   R        +L LV P  G+  E A    
Sbjct: 21  APGTPEFR-------ILLLTPEIPGNTGNAIRLAALTG-AELHLVEPL-GFGFEDAHLRR 71

Query: 62  ANADCVIDSVRVFSNLKEAIADLH-------------FIYATTARNRNNFKSVLAPKEAA 108
           A  D        + +L  A+  +H              + A TAR               
Sbjct: 72  AGLD--------YHDL--AVVTVHPDLDAALAALAPARVLAFTAR--------------G 107

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            V ++R+       ++FGRE  GL  E +A       +  P+ P   SLN++ AV + V+
Sbjct: 108 SVRHDRVAYRPGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPARRSLNLANAVSIAVY 167

Query: 167 ECMENSIVSSEKNVKEQ 183
           E       +      + 
Sbjct: 168 EAWRQHDFAGSAAHPDS 184


>gi|145590122|ref|YP_001156719.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048528|gb|ABP35155.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 156

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 37/176 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I+L +P++  N G + R   N    +L L+ P  G+P E A+   A  D     S++V  
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTG-AKLHLIEPL-GFPMEDAKLRRAGLDYHEFASIKVHP 61

Query: 76  N----LK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           N    L+ E     H    TT  +    +    P +                 +FG E  
Sbjct: 62  NWGHFLETEKPDPQHLFTLTTKGSGKFHEGKYTPNDY---------------FVFGSETK 106

Query: 131 GLTNEEIALSNAIISFP--------VNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           G+T EE+       S P        +     SLN+S  V ++V+E    + ++  K
Sbjct: 107 GIT-EEVRN-----SIPKMNQMRLAMQDNSRSLNLSNTVAIVVYEAWRQNGLAGGK 156


>gi|298209194|ref|YP_003717373.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849121|gb|EAP86990.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 171

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 70/173 (40%), Gaps = 14/173 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +T +  +  N+    V++L       N+G + R    F +T+  +V  R       +R  
Sbjct: 4   LTHHQTEFPNTQFPIVLVLDQLTSPANLGSIFRLADAFGITK--IVQYRCDIDMNSSRFK 61

Query: 61  SANADCVIDSVRVFSNL--KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                    + R  +     E I D+   Y T+ ++       L   +++  ++    S 
Sbjct: 62  --------RTARTTNTTVPSERIDDIS-SYITSLKSDGYTTIALEITDSSKPIDAIPLSS 112

Query: 119 QN-VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +N + +I G ER G++ + +   +      +     S+N++QA  + +++  +
Sbjct: 113 ENKLILIIGSERKGVSEQLLKHCDFATHITMFGKNSSMNVAQATGIALFQITK 165


>gi|299148911|ref|ZP_07041973.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
 gi|295087094|emb|CBK68617.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298513672|gb|EFI37559.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
          Length = 280

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 20/184 (10%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++   A+  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSVEEVCRKARRIVVIEGVVD---ATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           S  +  +I    +  +  E   +       A T ++ +    +L              + 
Sbjct: 167 SMGSVFLIPWTWLDGSPNELRKLGFRTVAMALTEKSISIDNPIL-------------ATE 213

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + I+ G E  GL NE I  ++ ++  P+     SLN++ A  +  W+    +      
Sbjct: 214 PKLAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDAILPP 273

Query: 179 NVKE 182
              +
Sbjct: 274 LPDD 277


>gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1]
 gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           extorquens PA1]
          Length = 268

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81
             N+G + R    F +T   +V      P+     A+S+S   + V   + +  NL EA+
Sbjct: 128 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 183

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T   R   +  L     A    + +   +   ++ G E  GL        +
Sbjct: 184 --------ITLGERGFTRIGLDSD--AGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCD 233

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            ++         SLN+S A  + ++    ++  ++
Sbjct: 234 LLVRIDATGAIRSLNVSNAAAITLYALTRSAGTAA 268


>gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
           ATCC 29453]
 gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
           ATCC 29453]
          Length = 249

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 23/182 (12%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59
           +   + ++ + P  +LV        N+G   R      +    ++ P+D     +     
Sbjct: 84  HLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSK 141

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +  A   +  + V +    L+E      ++  T      +      P            
Sbjct: 142 VACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGEADLFHYDIP------------ 189

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             Q V  + G E  G+        +A++S P+     S+NIS +  +++ E      + S
Sbjct: 190 --QAVAWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETRRQREMKS 247

Query: 177 EK 178
            +
Sbjct: 248 VQ 249


>gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
           12042]
 gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
           12042]
          Length = 261

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++ +   G ++IL + +   N+G V R         + L   R    +      S  A 
Sbjct: 102 ERIPSGKLGTIVILDELEDPHNLGAVLRTCDAVGADGVILRKNRSVSLNSTVAKVSTGAI 161

Query: 66  CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +    V      LK+     +++Y T  RN  +++              +      V 
Sbjct: 162 ETVPVAMVANLTQTLKQLKEKGYWVYGTDMRNAQDYR--------------QPAFDTPVA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++ G E  G++       + +++ P+     SLN S A  +++++ 
Sbjct: 208 LVIGSEGKGISRLVKEECDVMLTLPMEGTISSLNASVACAVLLYQI 253


>gi|269120819|ref|YP_003308996.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
 gi|268614697|gb|ACZ09065.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
          Length = 256

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 17/164 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
               G V+IL D Q   NIG + R M       L L        + K   ++     +  
Sbjct: 102 EEIDGDVVILDDVQDPGNIGTIIRTMEASGFKNLILTKGSVDVYNPKTVRATMGG--IFK 159

Query: 70  SVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           S  ++     + E + D ++   +T  ++N      +     + L E+         IFG
Sbjct: 160 SNIIYETPERITEFLKDNNYQVISTLLDKN------SIDYRDVELKEK------NAYIFG 207

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            E  G+++  I  ++     P+     SLN+S A  + +++  E
Sbjct: 208 NEGHGISDIFIESTDIKAIIPIYGDVDSLNVSVASGIFLYKMRE 251


>gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 245

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 14/168 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L+      +++L       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LEQQKAPLLLVLDGVTDPHNLGACLRTADAAGV-NAVIV-PKDKSAQLNSTARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  +RV +NL   + +L          R+N   V    E    L +   +G  + ++ 
Sbjct: 147 ENVPLIRV-TNLARTLRELQ--------KRHNVWVVGTAGETTETLYQTKLTGA-LALVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 197 GSEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQRL 244


>gi|85059886|ref|YP_455588.1| putative methyltransferase [Sodalis glossinidius str. 'morsitans']
 gi|84780406|dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 367

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 55/149 (36%), Gaps = 12/149 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
               N+G + R+  +F +    +V+      S  A  ++      + +++      + + 
Sbjct: 228 SNPHNLGAMLRSCAHFGVNS-VMVSDSALLDSGAAVRTAEGGAEHVKAIKC----DDVLQ 282

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL        R +    +V+     +      +       ++ G E   L+   ++ ++ 
Sbjct: 283 DLQ-------RFQRAGYTVVTLAGNSGTSLSTVKMPARTVLVLGEEGSALSEAVLSQADI 335

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++   +   PSLN+S +  +++ E    
Sbjct: 336 AVTINGSGRVPSLNVSVSAGILLAEWWRQ 364


>gi|323497036|ref|ZP_08102059.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
           21326]
 gi|323317880|gb|EGA70868.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
           21326]
          Length = 227

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 19/174 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP+E      +SA A   +D V    +++EAI+
Sbjct: 30  PNNVSAVIRTADATGIHKIHAV-----WPNEMRTLSHTSAGARNWVD-VETHDSIEEAIS 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++     + V   +I   +   II G E+ G + +   L++ 
Sbjct: 84  EL---------KSQGMQVLVTNLSDSAVDFRQIDYTKPTAIILGSEKIGASEQAKKLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
            I  P+  +  SLN+S A  ++++E       +   +    + P  +  +   L
Sbjct: 135 DIIVPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDNDVSSVP--QETIHRLL 186


>gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1]
 gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4]
 gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1]
 gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4]
          Length = 268

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81
             N+G + R    F +T   +V      P+     A+S+S   + V   + +  NL EA+
Sbjct: 128 PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 183

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T   R   +  L     A    + +   +   ++ G E  GL        +
Sbjct: 184 --------ITLGERGFTRIGLDSD--AGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCD 233

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            ++         SLN+S A  + ++    ++  ++
Sbjct: 234 LLVRIDATGAIRSLNVSNAAAITLYALTRSAGTAA 268


>gi|225020559|ref|ZP_03709751.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679757|ref|ZP_07402567.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946689|gb|EEG27898.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660377|gb|EFM49874.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 178

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 22/180 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           II   P +  N G   R   N   T L L  P      +K    +        +V+V+ N
Sbjct: 12  IIFDQPCIPPNTGNAIRLCANTGAT-LHLAGPLGFNLKDKNLKRAGLDYHDFANVQVYKN 70

Query: 77  LKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L+     L    H ++A ++ +     + +  +                 ++FG E  GL
Sbjct: 71  LQNCFDTLPEHQHRVFAFSS-HGTTTHTDITYRF-------------GDVLLFGTEPTGL 116

Query: 133 TNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATK 189
               +       I+  P+ P   S+N++ A  + ++E   +     +       +  A+ 
Sbjct: 117 DESALHHPRITEIVRIPMRPGIRSMNLANAASVAIYEVWRQLGYPGAADPTMPDSHNASS 176


>gi|255626589|gb|ACU13639.1| unknown [Glycine max]
          Length = 218

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 36/161 (22%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     N+G +AR+   F +++L LV  R  +    +  SS++        R F +
Sbjct: 7   VVVHNIAKRHNVGTLARSATAFGVSELILVG-RRDFNCFGSHGSSSHLRF-----RHFHS 60

Query: 77  LKEA---IADLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           L++A   + D  F       TT     N                     ++   + G E 
Sbjct: 61  LQDARKFLKDKDFDICGVEITTDSLPVNQHPFT----------------KSTAFLLGNEG 104

Query: 130 WGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166
            GL+ +EI +    +  P    +     SLN++ A  +++ 
Sbjct: 105 TGLSPKEIEICGFFVYIP---QYGGGTASLNVTVAASIVLH 142


>gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
 gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
          Length = 259

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 11/153 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L L +        K   +SA A   +    V S+L   ++
Sbjct: 118 QDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIA-VHSDLITQLS 176

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +          ++     V+A +  A +    I   Q   I+ G E  GL+ +  +L++ 
Sbjct: 177 N----------SQKQGIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLNSLADY 226

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            I  P+     SLN++    L+++E     + +
Sbjct: 227 HIRVPLLGNVESLNVAICAALILYEAQRQRLDT 259


>gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 271

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 12/164 (7%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + +     I L + +   N+G + R      ++ + L+       S +A  +S  +    
Sbjct: 117 KPAGTPLYIALYEVRDPGNLGTILRTADCAGVSGVILIGTCCDPYSFEAVRASMGS---- 172

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
               VF  +  A  D     A     +    S+ A      V ++         I+ G E
Sbjct: 173 ----VFD-VPFAHTDFD---AFNTWRKGEGMSLTAASVNGTVRHDGADFTGGSIILMGNE 224

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + GL +   A  + +   P+     SLN++QA  LM++E     
Sbjct: 225 QAGLPDWVEAACDTLSLIPMRGGADSLNLAQASALMIYEAWRQR 268


>gi|94968939|ref|YP_590987.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550989|gb|ABF40913.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 161

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 19/175 (10%)

Query: 8   LQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           + + ++ PV +L   V      N+G   RA    NL +L L       P +    ++  A
Sbjct: 1   MSDPSRLPVAVLLDNVRSMY--NVGAFFRAADGVNLQKLCLCGITAHPPKKAISKTALGA 58

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--VG 122
           +  +     +  ++          A   R        LA  E      +         V 
Sbjct: 59  EETVPWEHGWDAVE---------MAKHLRAEGFQ---LAAIETNPEATDLFDWQPRFPVC 106

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++FG E  GL  E +AL++  +  P+     SLN++ A  ++++E +        
Sbjct: 107 VVFGHEVGGLLPELLALADVHMRIPMRGEKTSLNVATAGGVVLYELLRKYQALQP 161


>gi|28210123|ref|NP_781067.1| rRNA methyltransferase [Clostridium tetani E88]
 gi|28202559|gb|AAO35004.1| rRNA methyltransferase [Clostridium tetani E88]
          Length = 162

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 29/164 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCV----IDS 70
           I+L  P++ +N G +AR      LT   L L+ P      EK    +   D      ++ 
Sbjct: 12  IVLFQPEIPQNTGNIARTCV---LTDSKLHLIKPLGFSLDEKHLKRA-GLDYWSQLSLEI 67

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              + +L++   D  F ++TT    ++ K+    +             +   I+FGRE  
Sbjct: 68  HESYEDLRKKYKDGKFYFSTT----HSTKTYSDVEFE-----------EGDFIVFGRETS 112

Query: 131 GLTN--EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           GL +   E    +  I  P+      SLN+S  V ++ +E +  
Sbjct: 113 GLPDYVREDNR-DTCIKVPMIKSSTRSLNLSNTVAIVTYEALRQ 155


>gi|329296468|ref|ZP_08253804.1| putative rRNA methylase [Plautia stali symbiont]
          Length = 142

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 37/162 (22%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP-------RDGWPSEKARSSSANADCVID 69
           I+L +P++  N G + R   N    QL L+ P       + G    +  +   +A     
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFAWDDKRGLDYHEYTALKKHAS---- 58

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               ++    A A       TT     +      P +                ++FG E 
Sbjct: 59  ----YAAFLAAEAPQRLFALTTKGTPAHSAVSYQPGDY---------------LLFGPES 99

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  E +       + P      S+N+S AV ++V+E    
Sbjct: 100 RGLPPEILN------ALPAEQKIRSMNLSNAVSVVVYEAWRQ 135


>gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
 gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
          Length = 244

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S + P +++L       N+G   R+     +  + +   R    +  A+  ++ A
Sbjct: 86  PDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGVHAIIVPKDRSAPLNATAKKVASGA 145

Query: 65  DCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +  +RV +    L+  + + + ++  T                 A     +      
Sbjct: 146 AENVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTVFQSKMTGP 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242


>gi|150026034|ref|YP_001296860.1| rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772575|emb|CAL44058.1| Probable rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 151

 Score = 65.5 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I+LV+P++  N G + R        +L L++P     ++K    S     V +D  +  +
Sbjct: 4   IVLVEPEIPNNTGNIGRLCVGTG-NRLHLIHPFGFEINDKNLKRSGLDYWVHLDWFQYKN 62

Query: 76  NLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +  + I D   ++  ++               A          +   ++FG+E  GL+
Sbjct: 63  TQEWIDQIPDKSRVFMMSS--------------HAQTSYYEANFQEGDWLVFGKESVGLS 108

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E + L    ++ P++    S NI+ +V  +V E    
Sbjct: 109 KEILNLFENHLTIPMSDKIRSYNIANSVAFVVGEARRQ 146


>gi|293372857|ref|ZP_06619231.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292632146|gb|EFF50750.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 147

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 25/153 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
           N G +AR      +  + +  P  G    +  A  +SA A   +   R   NL+  +   
Sbjct: 10  NFGAIARTCECAAVDAVII--PVRGSASVNADAVKTSAGALHTLPVCR-EQNLRSTLQYL 66

Query: 82  --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             +    + AT               E       +      + II G E  G++ E +AL
Sbjct: 67  KDSGFRIVAAT---------------EKGDYDYTKADYTGPLCIIMGAEDTGVSYENLAL 111

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  +  P+     SLN+S A  ++++E ++  
Sbjct: 112 CDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 144


>gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 245

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 14/168 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L+      +++L       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LEQQNTPLLLVLDGVTDPHNLGACLRTADAAGV-NAVIV-PKDKSAQLNSTARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  +RV +NL   + +L          R+N   V    E    L +   +G  + ++ 
Sbjct: 147 ENVPLIRV-TNLARTLRELQ--------KRHNVWVVGTAGETTETLYQTKLTGA-LALVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 197 GAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQRL 244


>gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
 gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
          Length = 247

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 32/178 (17%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P L    K P  ++      V      N G +AR      +  + +        +  A  
Sbjct: 88  PFLFEQGKNPFFVMLDGVTDVR-----NFGAIARTCECAAVDAVIIPARGSASVNADAVK 142

Query: 60  SSANADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           +SA A   +   R   NL+  +     +    + AT               E       +
Sbjct: 143 TSAGALHTLPVCR-EQNLRATLQYLKDSGFRIVAAT---------------EKGDYDYTK 186

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + II G E  G++ + +AL +  +  P+     SLN+S A  ++++E ++  
Sbjct: 187 ADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAVKQR 244


>gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MC40-6]
          Length = 247

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 25/174 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R   +       ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     +I  T+              + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKEAGVWIIGTS--------------DDASATLYDTKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             V I+ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 190 GPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325]
 gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325]
          Length = 271

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           IL   +   N+G + R      +  + +   R    S+ A  +SA A   I+ + V   S
Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGA---IEHMPVIRVS 182

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +L +AI  L     +I  TT   R+                 +I     + I+ G E  G
Sbjct: 183 SLTDAIKKLKEKGFWIAGTTLAERS-------------EEYTKIAKDVPLAIVIGNEGEG 229

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           ++       + +   P+     SLN S A  ++++E
Sbjct: 230 MSKVVTKECDFLYHLPMLGKIQSLNASVAAGIIMYE 265


>gi|57650645|ref|YP_186738.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160191|ref|YP_494488.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195679|ref|YP_500485.1| hypothetical protein SAOUHSC_01988 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221959|ref|YP_001332781.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510073|ref|YP_001575732.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142161|ref|ZP_03566654.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452654|ref|ZP_05700653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5948]
 gi|262050147|ref|ZP_06023001.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
 gi|262052684|ref|ZP_06024876.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
 gi|282924188|ref|ZP_06331863.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9765]
 gi|284024902|ref|ZP_06379300.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294850285|ref|ZP_06791020.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|304380541|ref|ZP_07363216.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|57284831|gb|AAW36925.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126165|gb|ABD20679.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203237|gb|ABD31047.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374759|dbj|BAF68019.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368882|gb|ABX29853.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257859629|gb|EEV82478.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5948]
 gi|259159433|gb|EEW44485.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
 gi|259161772|gb|EEW46360.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
 gi|269941326|emb|CBI49723.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592983|gb|EFB97985.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9765]
 gi|294822901|gb|EFG39335.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|302751664|gb|ADL65841.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340870|gb|EFM06795.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196795|gb|EFU27139.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141294|gb|EFW33139.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143578|gb|EFW35358.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314531|gb|AEB88944.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329729497|gb|EGG65899.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 156

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 24/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           I+L  P++  N G +AR     N   T L L+ P      +K    +       +  ++ 
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTN---THLHLIKPLGFRTDDKMLKRA--GLDYWEFVNIT 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWG 131
              ++ EA  ++           N    +L         + +     ++   IFG+E  G
Sbjct: 60  YHDSI-EAFFEVT----------NGEYYLLTKFGKKTYSDFDFSNHDKDFYFIFGKETTG 108

Query: 132 LTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +  +E    +  +  P++    SLN+S    L+++E +   
Sbjct: 109 LPDWVKEKYQ-DTALRIPMSEHIRSLNLSNTAALLIYEALRQQ 150


>gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis SK135]
 gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis SK135]
 gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU144]
 gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU028]
          Length = 255

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VIIL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 103 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  +I  T A N  +++ +               +  ++GI+ G E  G+
Sbjct: 163 LSKTIDELKDNGFWIAGTEANNATDYRDL--------------QADMSLGIVIGSEGQGM 208

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           +       +  I  P+     SLN S A  LM++E         EK+
Sbjct: 209 SRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 255


>gi|332881584|ref|ZP_08449233.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680582|gb|EGJ53530.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 180

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 10/158 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             +++L   +   N+G V R+   F +  + L       P  +   ++  A+  ++ V  
Sbjct: 28  PLIVVLDHVRSLYNVGSVFRSSDAFRVASVYLCGITATPPQVEIHKTALGAEDSVNWV-Y 86

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGL 132
           +   ++A+  L        +        +   E +I+L + +    +   II G E  G+
Sbjct: 87  YERTQDAVEHL--------KAEGYEVWAVEQVEGSIMLQDFQPDKAKKYAIILGNEVKGV 138

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             E +   +  I  P      SLN+S    ++VWE   
Sbjct: 139 QQEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176


>gi|256786656|ref|ZP_05525087.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289770551|ref|ZP_06529929.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289700750|gb|EFD68179.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 261

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 55/168 (32%), Gaps = 20/168 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
             + PV++L  P+   N G V R    F  T +      D W     R  +      +  
Sbjct: 114 PRRAPVVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----LHF 168

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             V   L+ A                     L   +        +    +  + FG ER 
Sbjct: 169 ATVVERLEVA---------------GLPPGPLFALDPEGEDIRGLELPDDALLAFGSERS 213

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GLT E  A ++ +++ P+ P   S N++ +V + ++            
Sbjct: 214 GLTPELRARADRLVALPMRPQVSSYNLATSVAMTLYHWSAGGGAPRVP 261


>gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581]
 gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae]
          Length = 229

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 10/163 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           LQ      ++IL   Q   N+G + R+     +  + L N R    +E +   S+     
Sbjct: 74  LQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNKRASKITEVSLKVSSGGFVG 133

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           I  + V ++L  AI  L          +  F    +  + + +  + +       II G 
Sbjct: 134 IKFIEV-NSLSTAIEKL---------KKWGFWVYASALDKSSLEIDSVNLNTPAAIIVGS 183

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  G++   +  ++ I   P+     SLN+S A  ++++  ++
Sbjct: 184 ESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILFNLLK 226


>gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR5-3]
 gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR5-3]
          Length = 256

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 21/180 (11%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSA 62
           A  +  + +  V++L       N+G   R+     +T   +V P+D      A  R  + 
Sbjct: 91  ARAVTYNPRALVLVLDGVTDPHNLGACLRSADAAGVT--AVVVPKDNAADITAVVRKVAC 148

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  VRV +   +L    A   +IY T                 A           
Sbjct: 149 GATETVPLVRVTNLARSLDALKAAGVWIYGTAG--------------EAGESLYSTELKG 194

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            V ++ G E  G+        + ++S P+     SLN+S A  + ++E     +++ + +
Sbjct: 195 AVALVMGAEGAGMRRLTRERCDFLLSLPMAGSVTSLNVSVATGVCLFEIRRQRLLAEDAS 254


>gi|260774740|ref|ZP_05883643.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609302|gb|EEX35454.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 227

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP++      +SA A   ++ V    ++ +A+A
Sbjct: 30  PNNVSAVIRTADATGIHKIHAV-----WPNDMRTLSHTSAGARNWVE-VETHDSIGKAVA 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L        +++     V    + A+   E I   +   II G E+ G + E   L++ 
Sbjct: 84  EL--------KDQGMQILVTNLSDTAVDFRE-IDYTKPTAIILGSEKIGASEEAKQLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +  N P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVIMYEAQRQRQAAGMYDNQVSNLP 178


>gi|297564496|ref|YP_003683468.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
 gi|296848945|gb|ADH61960.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
          Length = 153

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 67/165 (40%), Gaps = 30/165 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVF- 74
           ++L  P++ +N G +AR        +L L+ P    W   K + +        D +    
Sbjct: 4   VVLYQPEIPQNAGNIARTCA-AAAAELHLIRPLGFRWGDPKLKRA---GLDYWDHLHYVL 59

Query: 75  -SN----LKEAIADL--HFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             +    +++A+A      ++A +++  ++  +    P +                ++FG
Sbjct: 60  HDSWEAFVEKALAGARQSRVWAFSSKATQDYTRVPYQPGDY---------------LLFG 104

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL  E +    + ++ P+     SLN++ +V + ++E +  
Sbjct: 105 PETRGLPKEVLEQFPS-VTIPMPGKVRSLNLAVSVGIGLFEALRQ 148


>gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
 gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
          Length = 147

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        +     +S  A   +  V + +NL + + 
Sbjct: 5   QDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVP-VSIVTNLSQTLR 63

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +L     ++  T          +   +E    + +         ++ G E  G++N    
Sbjct: 64  NLKQEGYWVVGT---------DMKDAREYREGMYDS-----PTVLVIGSEGQGISNLVKK 109

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++  P+     SLN S A  ++++E     
Sbjct: 110 QCDYMVYLPMVGSITSLNASVAAAILMYEVYNQR 143


>gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum ATCC 27405]
 gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 1313]
          Length = 277

 Score = 65.5 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL       N+G + R         + +   R    +     +SA A   +   RV +
Sbjct: 130 IIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIEYVPVARVTN 189

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               ++       +I  T   + +  K                     V ++ G E  G+
Sbjct: 190 ISQTIEYLKKKNIWIVGT---DLSGEKPFFEADLKGP-----------VALVIGSEGEGM 235

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + I++ P+     SLN + A  ++++E     
Sbjct: 236 GRLVSEKCDFIVNIPMQGKISSLNAAVAAAIIMYEIRRQR 275


>gi|313679270|ref|YP_004057009.1| tRNA guanosine-2'-o-methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313151985|gb|ADR35836.1| tRNA guanosine-2'-O-methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 214

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 73/190 (38%), Gaps = 17/190 (8%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP        + +  +  + +L++      N+  + R      + +   VNP  G P+ 
Sbjct: 1   MTPERYRRLRDVLDKRQPDLTVLMENVHKPHNLSAILRTADAVGVYEAHAVNPTGGVPT- 59

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                ++        +RV  N++ A+  L        + R          E A+   E +
Sbjct: 60  --FHDTSGGSEKWVYLRVHPNVEAALEHL--------KGRGFTVYAANLSERAVDYRE-V 108

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +   ++ G E+WG++     L++A +  P+  +  SLN+S A  ++++E     + +
Sbjct: 109 DYTRPSAVLLGAEKWGVSPRAAELADADVIIPMMGMVQSLNVSVAAAVILFEAQCQRLAA 168

Query: 176 SEKNVKEQNT 185
                   + 
Sbjct: 169 GLYARPRLDP 178


>gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 254

 Score = 65.5 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 16/164 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73
           ++IL       NIG + R    FN+  L L  P +  PSE A    +++ A  ++  + V
Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132
            +           I  T    +            A    + I S +    IIFG E  G+
Sbjct: 162 TN-----------IVKTMQYLKKVGYWCYGFDCNAKENIDEIKSFEKKRVIIFGSEEKGM 210

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + ++  P++    SLN+S A  + ++     +  S+
Sbjct: 211 RRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 254


>gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 320

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q Q  ++  +++        N+G + R         L +   R    +      +A A  
Sbjct: 148 QAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGA-- 205

Query: 67  VIDS---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +++    RV  NL  A+  L     +IY T A       SV                  
Sbjct: 206 -LENFSVARVV-NLSRALEQLKESGFWIYGTAATGSEPLHSVRF--------------TG 249

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +  ++ G E  GL+       + ++S P+    PSLN S A  + ++E     + ++ 
Sbjct: 250 STVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQRLSNTH 307


>gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct]
          Length = 250

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEQLSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAG 150

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A   +    + +     +A L  I           K  L      +    + F   N 
Sbjct: 151 MGAQFSLKFGYITN-----LAKLKNIA-----KLQQRKIWLTTPHQGVSCYAKEFKLANS 200

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++FG E  G+ +  +         P      SLN++QA  + ++E +   +
Sbjct: 201 ILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 250

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEQLSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAG 150

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A   +    + +     +A L  I           K  L      +    + F   N 
Sbjct: 151 MGAQFSLKFGYITN-----LAKLKNIA-----KLQQRKIWLTTPHQGVSCYAKEFKLANS 200

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++FG E  G+ +  +         P      SLN++QA  + ++E +   +
Sbjct: 201 ILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
           1_1_47]
 gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella
           excrementihominis YIT 11859]
 gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
           1_1_47]
 gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella
           excrementihominis YIT 11859]
          Length = 268

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 17/161 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I L   Q   N+G + R+     +T + L +P+  +  S K   ++  A        + S
Sbjct: 119 IYLDGVQDPGNVGTILRSALASGVTNIAL-SPQCAYVWSPKVLRAAMGAHFF---CNIIS 174

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +++ A I +        A  R               L E  +       +FG E  G++ 
Sbjct: 175 SVELAEIKEKTGAVCLVADARG-----------GKDLYEEKWGKGQTLWVFGSEGLGVSE 223

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + + LS+  +  P++    SLN++ A  + ++E     +  
Sbjct: 224 KALELSDLTLLIPLDSRVESLNVATAASVCLFEQRRRRLSG 264


>gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341]
 gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341]
          Length = 271

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           IL   +   N+G + R      +  + +   R    S+ A  +SA A   I+ + V   S
Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGA---IEHMPVIRVS 182

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL +AI  L     +I  TT   R+                 +I     + I+ G E  G
Sbjct: 183 NLTDAIKKLKEKGFWIAGTTLAERS-------------EDYTKIAKDVPLAIVIGNEGEG 229

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           ++       + +   P+     SLN S A  ++++E
Sbjct: 230 MSKVVTNECDFLYHLPMLGKIQSLNASVAAGIIMYE 265


>gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
 gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
          Length = 259

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 14  GPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            P ++L+       N+G + R+   F     R V       + +  + +  A   ++   
Sbjct: 109 PPRVVLLDRVSDPHNVGAILRSAEVFGA---RAVIGVQRHSAPETGALAKAASGALERQP 165

Query: 73  V--FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
               +NL  A+ +L      +         + +  L                + V ++ G
Sbjct: 166 YLRVTNLARAMEELKDMGYLVAGLAGEAETDIRPALD-----------GHRDRPVALVLG 214

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E  GL ++     + ++       F SLN+S A  + ++
Sbjct: 215 AEGPGLRDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALY 254


>gi|238784018|ref|ZP_04628034.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
           43970]
 gi|238715126|gb|EEQ07122.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
           43970]
          Length = 230

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WP+ +  +   SA        V+   ++ +AIA
Sbjct: 30  PHNVSAIIRTADAVGIHQVH-----AIWPTTEMYTRLSSAAGSNSWVQVKTHPHITDAIA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        +++          + A+   E I   +   I+ G+E+ G++ E +AL++ 
Sbjct: 85  HL--------KSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISEEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +          P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRVLSVLPPAEQQRLLF 188


>gi|2191177|gb|AAB61063.1| belongs to the SPOU family of rRNA methylases [Arabidopsis
           thaliana]
          Length = 271

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 34/175 (19%)

Query: 17  IILVDPQLGENIGMVARAMWN--FNLT-----------QLRLVNPRDGWPSEKARSSSAN 63
           ++LV PQ+  N G +AR        L             L L+ P      +     +  
Sbjct: 84  VVLVSPQIPGNTGCIARTCAASAVGLHLVGVNVDDLICHLFLLQPLGFQVDDARVKRAGG 143

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                   +   +  +      F  AT   N          +     L +         +
Sbjct: 144 R-------KTNDSFYKKRNKDTFKIATITSN-------WVAENNGYNLMQDFSYRSGDYL 189

Query: 124 IFGRERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMEN 171
           +FG E  GL  E ++  N        +  P+   +   LN+S +V + ++E    
Sbjct: 190 LFGSETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQ 244


>gi|296394298|ref|YP_003659182.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181445|gb|ADG98351.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 154

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L +P++  N G + R        +L LV P     SE     +      +  V V  
Sbjct: 3   RVMLFEPRIAGNTGSLIRVSAATGC-ELHLVEPLGFGLSEPKLRRAGLDYHDLAHVVVHP 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              EA+A +    I+A T               A    ++ I       ++FG E  GL 
Sbjct: 62  GFDEALAAVPDARIFAFTV--------------AGSTRHDNIAYQAGDVLLFGPEPTGLP 107

Query: 134 NEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             E+A     +     P+     SLN++ A  + V+E       +  
Sbjct: 108 -AEVAHHPRVSDRARIPMLAGRRSLNLANAATIAVYEAWRQHGFAGG 153


>gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
           ATCC 12228]
 gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
           ATCC 12228]
 gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU045]
          Length = 255

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VIIL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 103 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  +I  T A N  +++ +               +  ++GI+ G E  G+
Sbjct: 163 LSKTIDELKDNGFWIAGTEANNATDYRDL--------------QADMSLGIVIGSEGQGM 208

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           +       +  I  P+     SLN S A  LM++E         EK+
Sbjct: 209 SRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 255


>gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 247

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  + V +NL  A+ +L                +    EA+  L +    G  V 
Sbjct: 145 GAADTVPYITV-TNLARALREL---------KDAGVWIIGTADEASGTLYDTKLDG-PVA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I+ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 194 IVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
 gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
          Length = 324

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q Q  ++  +++        N+G + R         L +   R    +      +A A  
Sbjct: 152 QAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGA-- 209

Query: 67  VIDS---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +++    RV  NL  A+  L     +IY T A       SV                  
Sbjct: 210 -LENFSVARVV-NLSRALEQLKESGFWIYGTAATGSEPLHSVRF--------------TG 253

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +  ++ G E  GL+       + ++S P+    PSLN S A  + ++E     + ++ 
Sbjct: 254 STVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQRLSNTH 311


>gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
           ATCC 10379]
 gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
           ATCC 10379]
          Length = 271

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           IL   +   N+G + R      +  + +   R    S+ A  +SA A   I+ + V   S
Sbjct: 126 ILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGA---IEHMPVIRVS 182

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL +AI  L     +I  TT   R+                 +I     + I+ G E  G
Sbjct: 183 NLTDAIKKLKEKGFWIAGTTLAERS-------------EDYTKIAKDVPLAIVIGNEGEG 229

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           ++       + +   P+     SLN S A  ++++E
Sbjct: 230 MSKVVTNECDFLYHLPMLGKIQSLNASVAAGIIMYE 265


>gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
 gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
          Length = 279

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 19/161 (11%)

Query: 18  ILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           +L++  Q   N+G + R+      + + L N      S K   ++  A  +   VR+   
Sbjct: 133 VLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGAHFL---VRIHER 189

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL E               R     V+A    A     ++     V  +FG E  GL++
Sbjct: 190 ANLAEV-------------ARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSD 236

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           E + +++  I+ P+     SLN + A  +  +E +      
Sbjct: 237 ELLQVAHERITIPMPGDAESLNAAAAAAVCFFERVRQMEAG 277


>gi|52424221|ref|YP_087358.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306273|gb|AAU36773.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 159

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAHIKKH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +        ++  + + +  F   L  K        +   G    ++FG E  G+  
Sbjct: 61  KTFE--------VFLESEKPKRLF--ALTTKGGPAHSEVKFELGDY--LMFGPETRGIPM 108

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +        I  P+     S+N+S +V + V+E    
Sbjct: 109 AILDSMPMEQKIRIPMTENSRSMNLSNSVAVTVYEAWRQ 147


>gi|167622328|ref|YP_001672622.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|167352350|gb|ABZ74963.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 228

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 73/184 (39%), Gaps = 19/184 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSA 62
           Q+ ++ +  + + +D     N I  V R      + ++  V     W   + R    +++
Sbjct: 11  QMLDNRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV-----WSELEMRVSGNTAS 65

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +   RV  ++++A+ +         R +          + A+   E I   +   
Sbjct: 66  GSQQWV-KTRVHQSMQQAVDEF--------RGKEMQILATTFSDTAVDFRE-IDYTRPTA 115

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           II G ER G++   IA ++  I  P+  +  SLN+S A  L+++E       +     ++
Sbjct: 116 IILGNERDGVSPAGIAAADQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRTAAGMYGTRK 175

Query: 183 QNTP 186
            +  
Sbjct: 176 LDDA 179


>gi|89900467|ref|YP_522938.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
 gi|89345204|gb|ABD69407.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
          Length = 161

 Score = 65.1 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 27/176 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+LV+P++  N G + R   N     L L+ P      +K    +       +   V   
Sbjct: 4   IVLVEPEIPPNTGNIIRLSANTGCA-LHLIEPLGFSMDDKHMRRA--GLDYHEYATVKRH 60

Query: 75  SNLKEAIADLH----FIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++ +  +A        ++A T R  R+ +++  AP +                ++FG E 
Sbjct: 61  ASWQAFLAGEQPAPERMFALTTRAGRSVYEAQFAPGDW---------------LVFGSET 105

Query: 130 WGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
            GL++           +  P+     SLN+S AV + V+E    +   + + V   
Sbjct: 106 KGLSDAVRQSFTLAQSLKLPMIEGQRSLNLSNAVAVTVFEAWRQNAFGASRVVPRD 161


>gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
 gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
          Length = 231

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 26/178 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WPS + R+   ++        V+   N+ +A++
Sbjct: 30  PHNVSAVIRTADAVGIHEVHAV-----WPSVRMRTMVSASAGSNSWVKVKTHRNITDAVS 84

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      + AT     N     +  +E        I   +   I+ G+E+ G+T E +A
Sbjct: 85  HLKTQGMQVLAT-----NLSAKAVDFRE--------IDYTRPTCILMGQEKTGITAEALA 131

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           L++  I  P+  +  SLN+S A  L+++E       +     +   +   + E    L
Sbjct: 132 LADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMY--QRTYSLLDEEEQQRLL 187


>gi|116327528|ref|YP_797248.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116331859|ref|YP_801577.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116120272|gb|ABJ78315.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116125548|gb|ABJ76819.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 153

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 32/164 (19%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76
           L  P++  N G +AR        +L ++       SEKA   +       D V++   S+
Sbjct: 7   LYRPEIPPNTGNIARLCVALG-AELHIIGQASFDLSEKAARRA--GLDYWDKVKISFHSS 63

Query: 77  LKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L+E  AI        T                        +   +    +FG E  G+  
Sbjct: 64  LEEYKAI----LPSGT---------DPYLISVYGKRSYTDVQYKEGDAFLFGNETSGVPT 110

Query: 135 -------EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                  EE      I+  P+      LN+S +V ++ +E M  
Sbjct: 111 KMKNSWSEE-----RILKIPMEDSSRCLNLSNSVAVISYEAMRQ 149


>gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
           22.1-21]
 gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
 gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
           22.1-21]
 gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
 gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866]
          Length = 246

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R           +V P+D     +  AR  +  A 
Sbjct: 89  LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 ETVPLIRV-TNLSRTLRDLQHNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + S
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246


>gi|126726856|ref|ZP_01742695.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
 gi|126703814|gb|EBA02908.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
          Length = 157

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 17/161 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+LV P++  N G + R      L +L L+ P      EKA   +         V   ++
Sbjct: 8   IVLVTPEIPWNTGAIGRTCVALGL-ELILIKPLGFSLDEKAVRRA--GTDYWKHVDLTLY 64

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + +  + D H             +S+   +E             N  +IFG E  GL  
Sbjct: 65  DDWQSFL-DAH---------NPAPESMYFFEEHGAQTIYEPEYDPNGYLIFGCESAGLPR 114

Query: 135 EEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
             +    + +   P+ +PL  SLN++     +V++ M   +
Sbjct: 115 AVLDGRDDQVFKLPMLSPLVRSLNLANVATAVVYQAMRKEL 155


>gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           D str. 1873]
 gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           D str. 1873]
          Length = 263

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R      +  + +   R+   +     +SA A   +   +V +
Sbjct: 116 ILILDEIEDPHNLGSIMRTAEICGVHGIIIPKRRNVGITPTVYKTSAGAAEYMKVAKV-A 174

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  AI ++                  A         +  F G  V ++ G E  G++  
Sbjct: 175 NLNRAIDNI---------KEKGIWVYGADMSGESYCFQTNFKGA-VALVIGSEGRGVSKL 224

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                + ++  P+     SLN S A  +M++E ++  + 
Sbjct: 225 TKEKCDVLVKIPMVGNITSLNASVAAGIMMYEVLKQKME 263


>gi|118468977|ref|YP_888083.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 252

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 22/175 (12%)

Query: 7   QLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            L +   GP     + V      N G + R         + L        + K   +SA 
Sbjct: 88  SLDDVLAGPAGLIAVPVQLSEPGNAGTLIRVADAMGAAAVVLAGNSVDPYNSKCLRASAG 147

Query: 64  ADCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +   I      D  RV   L++A      + ATT    +    +  P   A +       
Sbjct: 148 SIFSIPVISDPDEARVVQRLRDA---GLRVLATTV---DGEADLDDPDLEAELT------ 195

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +    +FG E  GL+ +  A+++  +  P+     SLNI+ A  + +++     
Sbjct: 196 -EPTAWLFGPEAHGLSTDLAAMAHRRVQIPMPGHAESLNIASAASICLYQSARAQ 249


>gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium
           praevalens DSM 2228]
          Length = 246

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL + +   N G + R  +      +     R    +     ++A A   +  V+V S
Sbjct: 96  VVILDEIKDPHNFGAIIRTAYAAGADAVVYQERRAVGITPVVLKAAAGAAEHLPLVQV-S 154

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI DL            NF  +     AA   +     G ++G++ G E  GL   
Sbjct: 155 NINYAIRDL---------KEANFW-IAGADAAADQTHFEADFGGSIGLVIGSEGSGLRRL 204

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++  P++    SLN S A  ++++E     
Sbjct: 205 VRENCDFLVKIPMSGKLGSLNASVAASVIIYEIFRQR 241


>gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 280

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 15/187 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-- 58
           + P          GPV++L       NIG + R+   F    L  V  R+  P E A   
Sbjct: 106 LPPMPLDEALERPGPVLVLDQVTDPRNIGAILRSAAAFGAACLV-VQDRNA-PEETAVLA 163

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            +++ A   +  VR   NL  AI  L      T                   L+   F G
Sbjct: 164 KAASGALETVPMVREV-NLSRAIEQLQKSGCWTVGL----------DAGGTTLDGASFDG 212

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + V ++ G E  GL        + I    +     SLN+S A  + ++E +   + S+ +
Sbjct: 213 RRVALVLGAEGKGLRRLTRESCDEIAGLYMPGEMESLNVSVAAAVGLYELVRRGMPSAYQ 272

Query: 179 NVKEQNT 185
               +  
Sbjct: 273 KAAAKKP 279


>gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
 gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
          Length = 244

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 23/166 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDS 70
              +++L   Q   N+G   R           +V P+D     +  A   ++ A   +  
Sbjct: 94  NALILVLDGVQDPHNLGACLRVADAVGAH--AVVAPKDRAVGLNATAIKVASGAADSVPY 151

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V V +NL  A+ ++     ++                    A      +     V  + G
Sbjct: 152 VTV-TNLARALREMQEAGIWVVGAAG--------------EAEKSVYEVDQKGPVAWVLG 196

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GL        + +   P+     SLN+S A  + ++E     
Sbjct: 197 AEGDGLRRLTRETCDELARIPMLGTVESLNVSVASGICLFEARRQR 242


>gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13]
          Length = 249

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 24/166 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+  + +   N+G + R         + +   R    +     +SA A   +   RV   
Sbjct: 102 IVCDEIEDPHNLGAIIRTAETAGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVANL 161

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 LKEA     +IY T A      K  L                  V ++ G E +
Sbjct: 162 AAALDTLKEA---GVWIYGTDASGDAYDKVDLT---------------GPVALVIGSEGF 203

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G+        + ++  P+     SLN S A  + ++E +      +
Sbjct: 204 GMGRLVREKCDFLLRLPMCGRITSLNASVAAGIFMYETLRQRAAKA 249


>gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 304

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 11/165 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             L + A+G +++L      +N+G + R+   F    + + +      +     ++A A 
Sbjct: 148 EDLGDPAEGIIVMLDQLTDPQNVGAIFRSALAFGARGIVVQDRHSPVLAGALAKAAAGAT 207

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +   RV +NL  A+           R  +     +     +  L E     +   ++ 
Sbjct: 208 ERLPCARV-TNLSRALE----------RLADLGWRAVGLDGDSEELLENALDHRPTVLVM 256

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+        + +   P+   F SLN+S A  + ++E   
Sbjct: 257 GSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSNAAAVALYEATR 301


>gi|312882902|ref|ZP_07742634.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369421|gb|EFP96941.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 227

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++  V     WP+E      +SA A   +D V    ++ EA+ 
Sbjct: 30  PNNVSAVIRTADATGLHKIHAV-----WPNEMRTLSHTSAGARNWVD-VETHDSIDEAV- 82

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                         + + ++       V    I   +   II G E+ G +     LS+ 
Sbjct: 83  -CQL-------KEQDMQVLVTNLSPTAVDFRDIDYTKPTAIILGSEKTGASERAKQLSDQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +    P
Sbjct: 135 DIIVPMVGMVQSLNVSVASAVVLYEAQRQRQAAGMYDNEVSQVP 178


>gi|268608876|ref|ZP_06142603.1| RNA methyltransferase, TrmH family [Ruminococcus flavefaciens FD-1]
          Length = 259

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L   Q   N+GM+ R      +  + L    D + S K   S+  +        VF  
Sbjct: 117 VVLYGLQDPGNVGMIIRTADALGINGVILSGSCDLY-SPKVIRSTMGS--------VFRM 167

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               I D   ++A          S     + A+ + E  F+G    +  G E  GL  + 
Sbjct: 168 AVSVINDTDALFAL-LEENGVESSAAVIDKDAVKVTECSFTG-RQAVFIGNEGNGLPADV 225

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  ++ P++    SLN + A  +++WE  +
Sbjct: 226 AHRCTRRVTIPMSGNINSLNAAMAAGILMWELKK 259


>gi|330827726|ref|YP_004390678.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
 gi|328802862|gb|AEB48061.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
          Length = 243

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 20/156 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R      + ++  V P+      K + ++  +   +D V++  ++  A+A+L
Sbjct: 30  PHNLAAIVRTADAIGIHRVHAVWPKTWI--HKRKGTARGSQNWVD-VKLHPDIGTAVAEL 86

Query: 85  HF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 I AT   + +                  I   +   I+ G+E+ G+  E +AL+
Sbjct: 87  KASGMQILATHLSDSSVD-------------FRAIDYTKPTAILVGQEKHGIGEEALALA 133

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  I  P+  +  SLN+S A   +++E      ++ 
Sbjct: 134 DHHIVIPMVGMVQSLNVSVAAAAILYEAQRQRELAG 169


>gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
 gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
          Length = 297

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSN---LKEA-I 81
           NIG + R+     +    L++P    P   +A   S      +   R+  +     EA +
Sbjct: 156 NIGAIFRSAAALGM-DAVLLSPSCCDPLCRRAIRVSMGTVFQVPWARLGEDKTQWPEAGL 214

Query: 82  ADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A LH +  TTA     +    V  P          + + + + I+ G E  GL  E IA 
Sbjct: 215 ARLHAMGFTTAAMALDDRALPVDDP---------ALQAAEKLAIVLGTEGDGLAAETIAR 265

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +A +  P+     SLN+  A  +  W+    
Sbjct: 266 CDATVMIPMQHGVDSLNVGAAAAVAFWQLRAR 297


>gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
 gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
          Length = 254

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF- 74
           +IL + +   N G + R      +    +V+ R+  P +   + SSA A   I   +V  
Sbjct: 107 VILDEIEDPHNFGAIIRTCEAVGVHG-IIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVAN 165

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + +   +  ++Y         +  +                  N+ I+ G E  G+
Sbjct: 166 IADTILKLQKENVWVYGACGEAEKIYTDMDF--------------KGNIAIVIGNEGKGI 211

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + +   P+     SLN S A  ++V+E +   
Sbjct: 212 GQLIRKRCDFLTKLPMKGKVSSLNASNACAILVYEALRQR 251


>gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae Rd KW20]
 gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
 gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
 gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae PittEE]
 gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae RdAW]
 gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031]
 gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           aegyptius ATCC 11116]
 gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
 gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
 gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE]
 gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae RdAW]
 gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031]
 gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           aegyptius ATCC 11116]
          Length = 246

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R           +V P+D     +  AR  +  A 
Sbjct: 89  LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + S
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 246


>gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 255

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             V++L +     N G + R         + +   R    ++    ++A A   +   RV
Sbjct: 107 PLVVVLDEIADPHNFGAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARV 166

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +N+ +A+           R +     ++     A V    +       ++ G E  G+ 
Sbjct: 167 -ANVAQALQ----------RLKQAGYWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMR 215

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + ++S P+     SLN S A  ++++E +   
Sbjct: 216 RWVREQCDFLVSIPILGRVQSLNASVAAGVLLYEAVRQR 254


>gi|23098542|ref|NP_692008.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
 gi|22776768|dbj|BAC13043.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
          Length = 157

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 63/166 (37%), Gaps = 29/166 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L +P++  N G + R      +T L L++P       K    +       + V V  +
Sbjct: 5   VVLFEPEIPANTGNIGRTCLATGVT-LHLIHPLGFSTDSKMVRRA--GLDYWEHVDVREY 61

Query: 75  SNLKEAI-----ADLHFI--YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            ++++       A  ++I  + T        K       +   +++          +FG+
Sbjct: 62  QSIEDLYETYPDAGFYYIENFGT--------KHYTDFDFSDSDMDQ--------FFVFGK 105

Query: 128 ERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+  E +    +  +   +N    SLN+S    ++++E +   
Sbjct: 106 ESTGIPKELLIGKEDQCLRIHMNDKVRSLNLSNTSAIIIYEVLRQQ 151


>gi|86142740|ref|ZP_01061179.1| spoU protein [Leeuwenhoekiella blandensis MED217]
 gi|85830772|gb|EAQ49230.1| spoU protein [Leeuwenhoekiella blandensis MED217]
          Length = 217

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 12/148 (8%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              N   V R+   F +  + ++    G   ++  +    A     SV+ + + K A+A 
Sbjct: 41  HLHNTSAVMRSCDAFGVQDIHVIEELKGKRIDREIAM--GAQK-WTSVKRYDSTKNALAK 97

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L        ++         P   A  L E     +   + FG E+ GLT   I  ++  
Sbjct: 98  L--------KSEGYQIVATTPHHTAHKL-EDFKLDKPTALFFGSEKDGLTETVIEAADEY 148

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I  P      SLNIS    +++ E  + 
Sbjct: 149 IYIPTFGFTQSLNISVCAAILLQELTQR 176


>gi|41409572|ref|NP_962408.1| hypothetical protein MAP3474 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398403|gb|AAS06024.1| SpoU [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 154

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 21/165 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
            V P++  N G   R        +L LV P     SE     +      + SV V ++L 
Sbjct: 6   FVSPRIAPNTGNAIRTAAATGC-ELHLVEPIGFDLSEPKLRRAGLDYHDLASVTVHASLA 64

Query: 79  ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              +A+     +  T+                A      +       ++FG E  GL   
Sbjct: 65  AAWDALTPARVVAFTS---------------HAPASFAELRYRPGDVLMFGPEPTGLDAA 109

Query: 136 EIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +A  +    +  P+     SLN+S A  + V+E       +   
Sbjct: 110 TLADPHVTTQVRIPMLAGRRSLNLSNAAAIAVYEAWRQHGYAGAT 154


>gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis RP62A]
          Length = 249

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 17/167 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VIIL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  +I  T A N  +++ +               +  ++GI+ G E  G+
Sbjct: 157 LSKTIDELKDNGFWIAGTEANNATDYRDL--------------QADMSLGIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           +       +  I  P+     SLN S A  LM++E         EK+
Sbjct: 203 SRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEVYRKRHQLEEKS 249


>gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
 gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
          Length = 315

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 18/168 (10%)

Query: 9   QNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           Q + + P +IIL +     N G + R         + +   R    +     +SA A   
Sbjct: 160 QENGEPPFIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVAKASAGAVEY 219

Query: 68  IDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +   RV +    ++    +  ++  T                              + ++
Sbjct: 220 VPVSRVTNISQTIEYLKKNNVWVVGT--------------DSTGEKAFYESDLKGPIALV 265

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+        + +++ P+     SLN S A  ++++E ++  
Sbjct: 266 VGSEGEGMGKLVREKCDFVVNIPMQGEISSLNASVAAAIVMYEILKQR 313


>gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 261

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 11/173 (6%)

Query: 1   MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           M   A        GP + +L   Q   N G + R+   F   ++          + K   
Sbjct: 94  MAVAAIPRAEPRYGPRVLVLDAIQDPGNAGTLVRSAEAFGFGEILFGTGTADPYAPKVVR 153

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +S          RV      AIA     Y    R+R+    ++A    A    +      
Sbjct: 154 ASMGGLF-----RVH-----AIAGDAEAYLRAWRDRHPDGVIVATAADASERCDEAPMAG 203

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            V ++ G E  G+++    L+   ++ P+     SLN + A  ++++E    +
Sbjct: 204 EVAVVIGNEARGVSDAVRQLAQRCVAIPMAGKAESLNAAMAGTILLYEAYRQA 256


>gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 285

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 13/161 (8%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V+     N G + R         +          S KA  +SA +   +   R  +N+K+
Sbjct: 129 VETNDPGNAGTLIRVADAMGADAVVFAGETADPQSCKAARASAGSLFHVPVARS-TNVKD 187

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNEEI 137
            +  L          R     +LA      V  +       +    +FG E  GL  E +
Sbjct: 188 VLGQL----------RAQGLQILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELL 237

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           A ++  +S P+     SLN++ A  + ++E       + E 
Sbjct: 238 AEADLRVSIPIRGRAESLNLATAASICMYESSRIQAAARET 278


>gi|254390184|ref|ZP_05005404.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294817173|ref|ZP_06775815.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326446044|ref|ZP_08220778.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197703891|gb|EDY49703.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294321988|gb|EFG04123.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 6/155 (3%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P    NIG V R+   F    + +          K+  ++  +   + +VRV     E 
Sbjct: 125 RPTSPGNIGSVIRSADAFGAHGMIVTGHAADLYDPKSVRATTGSLFSLPAVRV-PAPDEV 183

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +  +        R       ++   E            Q V ++ G E  GL++      
Sbjct: 184 MTWVER-----QRAAGLPLVLVGTDEKGDADVYDFDLTQPVLLLVGNETSGLSSAWRERC 238

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +A++  P+     SLN + A   +++E       +
Sbjct: 239 DAMVGIPMTGAASSLNAATAATAVLYEASRQRTAA 273


>gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU121]
          Length = 248

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VIIL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VIILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  ++  T A N  +++ +               +  ++ I+ G E  G+
Sbjct: 157 LAKTIDELKNNGFWVAGTEANNATDYRDL--------------EADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +       +  I  P+     SLN S A  LM++E       + +K
Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHSNGDK 248


>gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 418

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 18/178 (10%)

Query: 13  KGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + PV I L      +N+G + R+        L L   R    +      +A A   +   
Sbjct: 242 ESPVLIALDGLTDPQNLGAIVRSAEALGAHGLILPQRRSAGLTGSVAKVAAGALEHLPVA 301

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV +   +L+E     + I                  E    +NE  F G  V +  G E
Sbjct: 302 RVVNLNRSLEELKKSGYTIIGLAG-------------EGDKTINEITFDGPLV-LAIGSE 347

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             GL+       + ++  P+  +  SLN S A  ++++E      +            
Sbjct: 348 EKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLYEVARQGWMKGIAGQDPSPKL 405


>gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB0057]
 gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB056]
 gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB058]
 gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB059]
 gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB0057]
          Length = 249

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 23/155 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +NL   +A
Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164

Query: 83  DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L       +  T          +L   E A+ + +  FSG  V I+ G E  GL     
Sbjct: 165 HLKETTHVRVIGT----------MLD--ENALPIQKCDFSGA-VVIVMGAEDTGLRPITQ 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A  +     P++    SLN+S A  + ++E     
Sbjct: 212 AQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246


>gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Herminiimonas arsenicoxydans]
          Length = 247

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L ++  GP ++LV        N+G   R           ++ P+D     +  A   ++
Sbjct: 86  ELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAH--AVIAPKDRAVGLNATAAKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E       +  TT              ++   L E  FSG 
Sbjct: 144 GAADTVPYITVTNLARTLRELKERDILLIGTT-------------DDSEKGLYEADFSG- 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              +I G E  G+        + ++S P+     SLN+S A  + ++E     I + 
Sbjct: 190 PAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARRQRIATG 246


>gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414]
 gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414]
          Length = 261

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 11/165 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q Q    G V+ L   Q   N+G + R       T L L +      S K   +SA    
Sbjct: 103 QTQVPFTGLVLALETIQDPGNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAGQWF 162

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            + +  V  +LK          AT  +++     V+A    A +    +   +   I+ G
Sbjct: 163 RVATA-VSQDLK----------ATIQQSQQAGMQVVATLPTANLTYWDVDWRKPSLILLG 211

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  GL+ +  ++++  +  P++    SLN++ A  LM++E    
Sbjct: 212 NEGAGLSPDLASMADKQVKIPLSSGVESLNVAIAAALMMYEAQRQ 256


>gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 315

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 18/156 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+   F    + +   R    +  A  +SA A   +   +  +NL  A+ ++
Sbjct: 173 PRNLGAIVRSASAFGADGVIIPERRSVGMTASAWKTSAGAAVRVPVAK-CNNLTSALKEI 231

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                F+    A                + L     +   + I+ G E  GL+       
Sbjct: 232 KAAGIFVIGLDAGGD-------------MDLPNFELATGPLCIVVGSEGKGLSRLVRENC 278

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +AI+S P++    SLN S AV + ++E        +
Sbjct: 279 DAIVSIPIDSAMESLNASMAVGISLYEVSRLRAEQA 314


>gi|260172783|ref|ZP_05759195.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|315921069|ref|ZP_07917309.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|313694944|gb|EFS31779.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
          Length = 175

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A + +   K P V++L D +   NIG V R    F +  + L       P  +   ++ 
Sbjct: 13  SAEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
            A+  +D  +  +N  + + +L        +N       +   E +I+L+E ++   +  
Sbjct: 73  GAEFTVDW-KYVNNAVDVVDNL--------KNEGYIVYSVEQAEGSIMLDELQLDKTKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G+  E I  S+  I  P      SLN+S    +++W+  +
Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIWDLFK 172


>gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
           mirabilis ATCC 51599]
 gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
           mirabilis ATCC 51599]
          Length = 247

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC------VIDSVRVFSN 76
             N+G   R+     +    ++ P+D     ++ A  +++ A        V + VR    
Sbjct: 106 PRNLGACLRSADGAGVD--AVIAPKDHAAPLTDVAMHTASGAGESVPYILVTNLVRTVEQ 163

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++A                 F+      EA   L    F+G  V I+ G E  GL    
Sbjct: 164 LQDA----------------GFRVYGLADEADADLYRTDFAG-PVAIVMGAEDKGLRRLV 206

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
               +A++S P+     SLN+S A  ++++E +     +  
Sbjct: 207 REQCDALVSIPMMGSVSSLNVSVATGVVLYEVLRQRQATQA 247


>gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 253

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 23/173 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L ++  GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 92  ELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNSTAAKVAS 149

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E      ++  T                 A      I    
Sbjct: 150 GAAETVPYITVTNLARTLRELKDAGVWVIGTAG--------------DAQRSLYDIALDG 195

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            V ++ G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 196 PVALVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLFEAVRQR 248


>gi|325678815|ref|ZP_08158413.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
 gi|324109319|gb|EGC03537.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
          Length = 266

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 15/147 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSN--LKEAIA 82
           NIG V R+     +  + L +        +    S                +  +++  A
Sbjct: 126 NIGAVFRSAAAMGIDGILLTDGCSDPLFRRTIRVSMGTVFQIAWRYAGTSDSGYIEKLKA 185

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D     A   R+           +   + +ER+ + + + I+ G E  GL  + I+  + 
Sbjct: 186 DGWLTAAMALRD-----------DTVSIADERLKNAEKLAIVLGTEGDGLREDTISACDL 234

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
            +  P+     SLN++ A  +  WE  
Sbjct: 235 TVKIPMAHGVDSLNVAAAGAVAFWETR 261


>gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO
 gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis]
 gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 249

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA 160

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      ++  T A  R +F+++                   + ++ G E  G+  
Sbjct: 161 RTLEEMKERGIWVVGTDASAREDFRNM--------------DGNMPLALVIGSEGKGMGR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242


>gi|331268747|ref|YP_004395239.1| tRNA/rRNA methyltransferase SpoU [Clostridium botulinum BKT015925]
 gi|329125297|gb|AEB75242.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium botulinum
           BKT015925]
          Length = 160

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 36/174 (20%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +     I+L +P++ +N G + R     N   ++L L+ P      +K+   +       
Sbjct: 3   NTPNLNIVLFEPEIPQNTGNIGRTCVLTN---SKLHLIKPLGFSIDDKSVKRA--GLDYW 57

Query: 69  DSVR--VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             ++  +  +  + I           R   +    L+  + A   ++ +   +   I+FG
Sbjct: 58  PHLKLEIHESFDDMI-----------RKYPDANIYLSTTKGAKYHHDEVNYKEGDFIVFG 106

Query: 127 RERWGLTNEEIALSNAI--------ISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           RE  GL        + I        I  P+      SLN+S  V ++ +E +  
Sbjct: 107 RESSGLP-------DYIRDKYVENRIRVPMIKTTMRSLNLSNTVSIVAYEALRQ 153


>gi|262273555|ref|ZP_06051369.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222533|gb|EEY73844.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 230

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 13/172 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  + R      + Q+  V P++         +SA A   +D V    N  +A A  
Sbjct: 30  PNNISAIIRTADAVGIHQVHAVWPKNSKM-RTLGGTSAGARNWVD-VVTHDNTPDAFA-- 85

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   + +     V    E A+   E I   +   I+ G+E+ G++ + +AL++  I
Sbjct: 86  ------ALKAKGMQILVTNLSETAVDFRE-IDYTKPTAIVMGQEKTGISQQALALADQDI 138

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
             P+  +  SLN+S A  L+++E       +          P  + E+   L
Sbjct: 139 IIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYQRTRTLIP--QAEVDRIL 188


>gi|268593333|ref|ZP_06127554.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
           DSM 1131]
 gi|291311030|gb|EFE51483.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
           DSM 1131]
          Length = 167

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 33/173 (19%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+L +P++  N G + R   N     L L++P      +K    +      +D    +
Sbjct: 2   PHIVLFEPEIPPNTGNIIRLCANTGF-DLHLIHPLGFTWDDKRLRRAG-----LD----Y 51

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------------GQN 120
           S   + I   H  +A            L P         R+F+               +N
Sbjct: 52  SEFAD-IKHHHDYFAF------LKSEGLNPDNNQSESGARVFALTTKGKPSHSNVSYQEN 104

Query: 121 VGIIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++FG E  GL    +        I  P+     S+N+S +V ++V+E    
Sbjct: 105 DYLMFGPETRGLPPYVLDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 157


>gi|213855785|ref|ZP_03384025.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 179

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 52  WPSEKARSSSANA--DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
           WP  + R+ ++ A        V+    + +A+A L        + R          + A+
Sbjct: 2   WPGSRMRTMASAAAGSNSWVQVKTHRTIDDAVAHL--------KGRGMQILATHLSDKAV 53

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              E I   +   I+ G+E+ G+T E + L++  I  P+  +  SLN+S A  L+++E  
Sbjct: 54  DFRE-IDYTRPTCILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQ 112

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSF 195
                +     +    P  + + L F
Sbjct: 113 RQRQNAGMYLRENSMLPEDEQQRLLF 138


>gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 251

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 13/172 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +L  +    +++L   Q   N+G + R      +    + + R    +  A  ++A A 
Sbjct: 90  EELLGTENPLIVVLNAIQDPRNLGAILRTAEAAGVDGAVVPSRRAAPLTPAAAKTAAGAV 149

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +   RV +             A T R  +     V+       V       G  + ++
Sbjct: 150 EYLPVARVTN------------IALTLREFKQKGLWVVGADPDGPVSYWDADLGGPLALV 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G E  GL     A  ++++  P++    SLN S A  L+++E +       
Sbjct: 198 IGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIYEAVRQRRAGG 249


>gi|269214336|ref|ZP_06158510.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
 gi|269210033|gb|EEZ76488.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
          Length = 178

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A  L +  KG  ++L   Q   N+G V R+     +  + L        S K   +  
Sbjct: 20  PDAGALPD--KGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGM 77

Query: 63  NADCVIDSVRVFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  +     ++   +L+  +A     ++AT  R              A++ NE +   +
Sbjct: 78  GAHFL---SEIYPQADLEIWLARYEDRVFATALREEK----------QAVLYNEDLR--E 122

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               +FG E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 123 PTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 177


>gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
 gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
          Length = 245

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L  S K P ++IL       N+G   R      +    +V P+D     S   R  +  A
Sbjct: 89  LSGSEKPPFLLILDGVTDPHNLGACLRTADAVGVQ--AVVVPKDKSASLSPTVRKVACGA 146

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  VRV +     +A             +    +    EA   L++  F+G  V ++
Sbjct: 147 AETVPLVRVTN-----LARFMRTI-----RDDGVWLIGTAGEADSTLHQADFTG-PVALV 195

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G E  G+        + +I+ P+     SLN+S A  + ++E +   + 
Sbjct: 196 MGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLYEALRQRLA 245


>gi|46143316|ref|ZP_00135490.2| COG0219: Predicted rRNA methylase (SpoU class) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207549|ref|YP_001052774.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975518|ref|YP_001651111.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149330|ref|YP_001967855.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250539|ref|ZP_07336736.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244862|ref|ZP_07526961.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249259|ref|ZP_07531256.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251582|ref|ZP_07533489.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253816|ref|ZP_07535670.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256081|ref|ZP_07537869.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258272|ref|ZP_07540015.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260513|ref|ZP_07542207.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262643|ref|ZP_07544273.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096341|gb|ABN73169.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875619|gb|ABY68667.1| probable tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914461|gb|ACE60713.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302650527|gb|EFL80686.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854307|gb|EFM86513.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306858783|gb|EFM90842.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861046|gb|EFM93052.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863300|gb|EFM95240.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865503|gb|EFM97398.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867732|gb|EFM99577.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869825|gb|EFN01608.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306872066|gb|EFN03780.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 159

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 27/174 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L ++ P    W  +K R S        + V +  
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRS---GLDYHEFVDIQK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG-- 131
           + N ++ +             R   K + A        +  +       ++FG E  G  
Sbjct: 60  YKNFEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIP 107

Query: 132 ---LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
              L N  + +S  I   P+     S+N+S  V ++V+E             + 
Sbjct: 108 MTILDN--LPMSQKI-RVPMCKDSRSMNLSNTVAVVVYEAWRQFGYQGSVPRQP 158


>gi|319892892|ref|YP_004149767.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162588|gb|ADV06131.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464075|gb|ADX76228.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           pseudintermedius ED99]
          Length = 156

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L  P++  N G +AR     + T L L+ P      +K    +         V +  +
Sbjct: 5   VVLYQPEIPANTGNIARTCAATD-THLHLIRPLGFSTDDKMLRRA--GLDYWKYVSITYY 61

Query: 75  SNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N++      +  +   T   ++N+               +     QN   IFG+E  GL
Sbjct: 62  DNIESFFEQTEGQYFLLTKFGSKNHT------------SQDFSDVDQNYYFIFGKETTGL 109

Query: 133 TNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +      +   +  P+N    +LN+S    ++V+E +   
Sbjct: 110 PDWVKDKYDNTALRIPMNENVRALNLSNTAAILVYEALRQQ 150


>gi|159903443|ref|YP_001550787.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888619|gb|ABX08833.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9211]
          Length = 162

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 31/163 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           + L +P++ +N G + R    F +  L L+ P       K    +       D   +   
Sbjct: 10  VALFEPRIPQNTGNIGRTCAAFQIP-LHLIKPLGFSLDSKLLKRA--GLDYWDFIDLTTH 66

Query: 75  SNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N       I+D   +   + ++              I LN+  F  ++V ++FGRE  G
Sbjct: 67  ENFSAFKIHISD-KRLIGFSKKD-------------GIPLNKITFKPEDV-LLFGREDTG 111

Query: 132 LTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
           L  +     + ++S P+        +    SLN+S A  +  +
Sbjct: 112 LPEDIREACDLMVSIPMPGKADSDGSNGVRSLNLSSACAIASY 154


>gi|313668290|ref|YP_004048574.1| RNA methyltransferase [Neisseria lactamica ST-640]
 gi|313005752|emb|CBN87206.1| putative RNA methyltransferase [Neisseria lactamica 020-06]
          Length = 261

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  ++L   Q   N+G V R+     +  + L        S K   +   A  +     
Sbjct: 111 KGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFL---SE 167

Query: 73  VFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++   +L+  +A     ++AT  R              A++ NE +   +    +FG E 
Sbjct: 168 IYPQADLEIWLARYEDRVFATALREEK----------QAVLYNEDLR--EPTAWVFGNEG 215

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 216 AGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           radioresistens SK82]
 gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
 gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           radioresistens SK82]
 gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
          Length = 251

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 21/158 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +    L +
Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQ 165

Query: 80  AIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   +  T          +L   E A+ L +   +G  V I+ G E  GL     A
Sbjct: 166 MKEHSQVRVIGT----------MLD--EQALPLQQCDLTGPIV-IVMGAEDTGLRPITQA 212

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  +  P+     SLN+S A  + ++E        S
Sbjct: 213 QCDHKVYIPMAGNLQSLNVSVATGMALYEACRQRNAKS 250


>gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 314

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 15/172 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADC 66
           QN     V++L       N+G + R+   F    L +V      P E    +  ++ A  
Sbjct: 153 QNRDHAVVMVLDQVTDPHNVGAILRSAAAFGA--LAVVVTDRHSPEETGTLAKSASGALE 210

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V+  VRV + ++ A+  L      TA               A     +      + ++ G
Sbjct: 211 VMPLVRVTNMVR-ALEQLKEAGFWTAGLAG----------EATQTLAQAKLSGKIALVMG 259

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            E  GL        + ++  P++ L  SLN+S A  + ++E   +  ++   
Sbjct: 260 AEGEGLRRLTREHCDHLVKLPMSDLVESLNVSNAAAISLYELARDQDLAVPP 311


>gi|327312806|ref|YP_004328243.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
 gi|326945589|gb|AEA21474.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
          Length = 205

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 23/194 (11%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              + + + K P +++L D +   N+G V R+   F +  + L       P+ +   ++ 
Sbjct: 13  SVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYAT-----TARNRNNFKSVLA--PKEAAIVL 111
             +  +   R F   +EA+ +LH    F+Y+      + + ++    +L   P+E     
Sbjct: 73  GGEDSVAW-RYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDTRLLTSAPREMEQDC 131

Query: 112 NE----------RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
                                ++ G E  G+    + +S+  +  P      SLN+S   
Sbjct: 132 PAADTSHPTHPLHPRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTA 191

Query: 162 LLMVWECMENSIVS 175
            +++WE     ++ 
Sbjct: 192 GIVIWEFARRLLLE 205


>gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 244

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 21/178 (11%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59
           +     L   A   ++IL       N+G   R      +    +V P+D     +  AR 
Sbjct: 83  SDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARK 140

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +  A   +  +RV +    ++E      +I  T                 A     ++ 
Sbjct: 141 VACGAAETVPLIRVTNLARTMRELQERNIWIVGTAG--------------EATESLYQVK 186

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
              ++ ++ G E  G+        + ++S P+     SLN+S A  + ++E +   ++
Sbjct: 187 LTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQKLL 244


>gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
 gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
          Length = 243

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 28/168 (16%)

Query: 15  PVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           P+I+L      V      N G +AR+        L +        + +A  SSA A   I
Sbjct: 94  PLIVLFDGVTDVR-----NFGAIARSAECAGAHGLIVPLKNAAPVNSEAIRSSAGALTAI 148

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV S    LK   A+ + +   T ++R         K                 ++ 
Sbjct: 149 PVCRVGSIRNTLKALQAEGYQVVGATEKSRKLLYDADFRK--------------PTALVM 194

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G++ E + L +  ++ P+     SLN+S A  ++++E +   I
Sbjct: 195 GAEDTGISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLFEIVRQRI 242


>gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
           N1-067]
          Length = 251

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244


>gi|325982188|ref|YP_004294590.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
 gi|325531707|gb|ADZ26428.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
          Length = 274

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 24/184 (13%)

Query: 4   YAPQLQNS---AKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
             P LQ +    K  + +L++  Q   N+G + R+    N + + L        S K   
Sbjct: 104 SKPALQGNTHTRKEVLSVLLETIQDPGNLGSILRSAAAANASHIYLSKHCADAWSPKTLR 163

Query: 60  SSANADCVIDSVRVFSN--LKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           ++  A   +    ++ N  LK+        + AT+              +A   L E   
Sbjct: 164 AAMGAHFFLH---IYENSNLKQIAQQFPGTVIATSI-------------QATKNLFEISL 207

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +G     +FG E  GL+ E I  ++  I+  +     SLN++ A  +  +E +     SS
Sbjct: 208 AG-PTAFLFGNEGAGLSAEMIQAAHLNIAITMPGKTESLNVAAAAAICFFEKVRQDKYSS 266

Query: 177 EKNV 180
             + 
Sbjct: 267 PSST 270


>gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           DSM 20548]
 gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           DSM 20548]
          Length = 234

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           IIL   +   N+G + R+  +F    + +   R    +     +SA A   I++++V   
Sbjct: 87  IILDKIEDPHNLGAIIRSAESFGFDAVIIPERRSASVTSTVYKTSAGA---INNIKVVRV 143

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +NL   I DL     +IY       ++             L         VG++ G E  
Sbjct: 144 TNLTRTIKDLKDKGFWIYGLAGEAHSDISH--------ADLR------GKVGLVVGNEGE 189

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G++       + +I+ P+     SLN S A  + ++E +  
Sbjct: 190 GISRLVRENCDMLINIPMLGRVNSLNASVAAAISMYELLRQ 230


>gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           29755]
 gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           29755]
          Length = 244

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 63/178 (35%), Gaps = 21/178 (11%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59
           +     L   A   ++IL       N+G   R      +    +V P+D     +  AR 
Sbjct: 83  SDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARK 140

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +  A   +  +RV +    ++E      +I  T                 A     ++ 
Sbjct: 141 VACGAAETVPLIRVTNLARTMRELQERNIWIVGTAG--------------EATESLYQVK 186

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
              ++ ++ G E  G+        + ++S P+     SLN+S A  + ++E +   ++
Sbjct: 187 LTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQKLL 244


>gi|319781799|ref|YP_004141275.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167687|gb|ADV11225.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 271

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
             +  V++LV     +N+G + R    F    + L          KA   S  A   I  
Sbjct: 117 PPRALVVVLVGIANHDNVGSIFRNAAAFGADAVLLDATCCDPLYRKAIRVSVGAALKIPF 176

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                      A       TT   R   +  L+P+             + + +  G E  
Sbjct: 177 ASFTDT-----AGFT----TTLARRGFEQFALSPR--GKTDIRDAQRSERLALYLGTEGE 225

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           GL ++ +A  +  +   +   F SLN++ A  + +      +I+  
Sbjct: 226 GLPDDLLASLHN-VRITMAEGFDSLNVAAASAIALHHFSARAILGK 270


>gi|227875291|ref|ZP_03993433.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269978178|ref|ZP_06185128.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
           mulieris 28-1]
 gi|306818553|ref|ZP_07452276.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700888|ref|ZP_07637913.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|227844196|gb|EEJ54363.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269933687|gb|EEZ90271.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
           mulieris 28-1]
 gi|304648726|gb|EFM46028.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307613883|gb|EFN93127.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 269

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 19/167 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L        +IL + Q   N+G + R         + +        S K   +S  + 
Sbjct: 108 PPLHELRGRVALILPETQDPGNVGTMLRLADACGAGSVFMGEQSADVSSPKVIRASVGSV 167

Query: 66  CVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             +      D  ++ S L E      ++ A TA        + AP      +  + F+ +
Sbjct: 168 FHVPTPRFSDLAQLVSTLHE----SQWLVAGTA--------LDAPLAWGFEVASQ-FADK 214

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            V  + G E  GL   +  L + +++ P+     S N+SQA  L +W
Sbjct: 215 KVAWMMGNEAHGLNAAQRELCDVLMAIPMFGQAESFNVSQAATLALW 261


>gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
 gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
          Length = 231

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 73/180 (40%), Gaps = 30/180 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  + R      + Q+  V     WP+ + R+    +A ++  + +V+    + + +
Sbjct: 30  PHNVSAIIRTADAVGVHQVHAV-----WPTTRMRTLVSSAAGSNNWV-NVKTHHTISDTV 83

Query: 82  ADLHF----IYATTARNRN-NFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             L      + AT   +R  +F+ V   +                 ++ G+E+ G+T+E 
Sbjct: 84  NHLKTQGMQVLATHLSSRAVDFREVDYTR--------------PTCVLLGQEKTGMTDEA 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           +AL++  I  P+  +  SLN+S A  L+++E       +   +     +   + E    L
Sbjct: 130 LALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGLYH--RDRSMLDEEEQQRLL 187


>gi|257094430|ref|YP_003168071.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046954|gb|ACV36142.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 272

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 16/171 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
              +   ++L   Q   N+G + R+       Q  L++P      + K   ++  A   +
Sbjct: 112 PDMQADTVVLDGVQDPGNVGSILRSAAAAGFRQ-ILLSPDCAQAWAPKTLRAAMGAHFQL 170

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D           +         +A       ++L     A            V  +FG E
Sbjct: 171 D----------VLEHCDLPAFLSAYRGQPVATLL----GASTSLYGADLAGPVAWVFGSE 216

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             G+     AL+   +  P+     SLN++ A  + ++E +      +  +
Sbjct: 217 GLGVRPAVAALTRLQVRIPMPGPSESLNVAAAAAVCLFETVRRRQTEASPS 267


>gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
 gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013150]
 gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013113]
 gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6014059]
 gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2]
 gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013150]
 gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013113]
 gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6014059]
          Length = 249

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 23/155 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +NL   +A
Sbjct: 108 PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 164

Query: 83  DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L       +  T          +L   E A+ + +  FSG  V I+ G E  GL     
Sbjct: 165 HLKETTHVRVIGT----------MLD--ENALPIQKCDFSGA-VVIVMGAEDTGLRPITQ 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A  +     P++    SLN+S A  + ++E     
Sbjct: 212 AQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246


>gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 86-028NP]
 gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 246

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R           +V P+D     +  AR  +  A 
Sbjct: 89  LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E     + S
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQRLGS 246


>gi|227549929|ref|ZP_03979978.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227077945|gb|EEI15908.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 169

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +I  +P +  N G   R       T L LV P      EK    +      + +V +  +
Sbjct: 19  VIFDNPVIPPNTGNAIRMCAGSGAT-LHLVEPLGFTLDEKHLRRAGLDYHDLANVIIHPD 77

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L   +A L    ++A T +    F                I   +   ++FG E  GL  
Sbjct: 78  LDACLAALTGSRVFAFTTQASAYFH--------------EIAYERGDALLFGTEPTGLPE 123

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                      +  P+ P   S+N+S +  +  +E    
Sbjct: 124 SHAHHPRVTERVRIPMLPGRRSMNLSNSAAVATYEAWRQ 162


>gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 249

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA 160

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      ++  T A  R +++++                   + ++ G E  G+  
Sbjct: 161 RTLEEMKERGIWVVGTDASAREDYRNM--------------DGNMPLALVIGSEGKGMGR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242


>gi|288799638|ref|ZP_06405097.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332886|gb|EFC71365.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 267

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P    +  +A    I+  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSVESICKTASRIAIVDGVVDTT---NIGAIFRSAAALGIDGILLTKSSCDPFNRRAVGV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           S  +  +I    + +N+ E ++   F   A     R+N   +   +  A          +
Sbjct: 167 SMGSIFLIPWTWLDNNISE-VSQYGFKTVAMA--LRHNSIDINDARLKAE---------K 214

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + II G E  GL    I  ++ ++  P+     SLN++ A  +  WE  +N+
Sbjct: 215 KLAIILGTEGDGLAESTILDTDYVVKIPMYNAVDSLNVAAASAIAFWELCKNT 267


>gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae
           BGR1]
          Length = 250

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 25/180 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH--AIIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T               + A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVIGTA--------------DDAPASLYETKLD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             V ++ G E  G+        + +++ P+     SLN+S A  + ++E +    V++  
Sbjct: 190 GPVALVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLYEAVRQRRVAAAA 249


>gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 267

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 15/145 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--AIADL 84
           NIG + R+     +  + L        + +A   S  +  ++        L E  A+   
Sbjct: 133 NIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFLVPWTWSEQPLAELSALGFR 192

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
               A T    +N  S+            ++ +   + I+ G E  GL ++ IA ++ ++
Sbjct: 193 TAAMALT----HNSISLDD---------AKLKAEPRLAIVMGTEGDGLPHQVIAQADYVV 239

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
             P+     SLN++ A  +  WE  
Sbjct: 240 RIPMAHGVDSLNVAAASAVAFWELR 264


>gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 248

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 15/172 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   +  +S K  V++L       N+G + R      L ++ L +      + KA  +  
Sbjct: 92  PDKVECPSSLKPFVLVLDGVAEPGNMGTILRTALAVGLERVILTSGTVDPYNAKAVRAGM 151

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   ++ +    +L+    D              F  + +P+   I L  + F      
Sbjct: 152 GAQFRLEFI-YVESLESLSQDF---------PEAKFW-LTSPRAD-ISLYNKGFDLSGSF 199

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           ++FG E  G+ +  +      ++ P+     SLN++QA  L ++E +  +++
Sbjct: 200 LVFGEEGDGIKDFSVG---ERVTIPMPGDTESLNVAQAATLFLFEGVRRNLL 248


>gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101]
          Length = 556

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G + R+        L L   R    +      +A A   +   RV +   +L+   
Sbjct: 318 PHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 377

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            + + +                  EA + L+E    G  V I+ G E  GL+       +
Sbjct: 378 EEGYRVIGLAG-------------EAGVALSEADLDGPLV-IVTGSEGSGLSMLTRKHCD 423

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            ++  P+    PSLN S A  ++++E      +          
Sbjct: 424 QLVRIPLRGATPSLNASVATAMVLYEVARRGWMKQITGSAPAP 466


>gi|311743114|ref|ZP_07716922.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
 gi|311313794|gb|EFQ83703.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
          Length = 156

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 22/156 (14%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKE 79
           +P++  N G   R       ++L LV+P   +  E  +   A  D   +  V V ++L  
Sbjct: 8   EPRIAGNTGSAIRLAAATG-SELHLVDP--LFDLEDTKLRRAGLDYHDLAVVTVHADLDA 64

Query: 80  AIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           A   L    ++A TA+    +  V                     ++FG E  GL  E +
Sbjct: 65  AWDHLLPARVFAFTAQAERVYTDVRYR--------------PGDVLLFGPEPTGLPGEVM 110

Query: 138 A--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                   +  P+ P   S+N++    + V+E    
Sbjct: 111 DDPRVTDRLRLPMLPGRRSMNLANCASVAVYEAWRQ 146


>gi|157373101|ref|YP_001481090.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
 gi|157324865|gb|ABV43962.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
          Length = 231

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 18/174 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+  V     WP+ + R+   SA       +V+    + +A+ 
Sbjct: 30  PHNVSAIIRTADAVGVHQVHAV-----WPTPRMRTLVSSAAGSNSWVNVKTHPTIVDAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  +++            A+   E +   +   ++ G+E+ G+T E + L++ 
Sbjct: 84  -------THLKDQGMQILATNLSARAVDFRE-VDYTRPTCVLLGQEKTGITEEALRLADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
            I  P+  +  SLN+S A  L+++E       +     + +++   + E    L
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGLY--RREHSMLDQEEQQRLL 187


>gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
 gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
          Length = 335

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 26/170 (15%)

Query: 15  PVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--- 70
           PVI++ D      N+G + R         L +   R    +      +A A   +++   
Sbjct: 174 PVIVVADSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGA---LENFPV 230

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            RV  NL  A+ DL     +IY T A       +V                   + ++ G
Sbjct: 231 ARVV-NLGRALEDLKEAGFWIYGTAAGGSEPLHTVSFR--------------GPIVLVIG 275

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            E  GL+       + ++S P+    PSLN S A  + ++E      +++
Sbjct: 276 SEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQRSLNT 325


>gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
 gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
          Length = 244

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L + +   N+G + R      +  + +   R    +     +SA A   + SV   +NL 
Sbjct: 97  LDELEDPHNLGAIIRTADAVGIHGVVIPRRRAVGITPAVVKASAGAVEYV-SVCRVTNLA 155

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           + I             +     V+    AA     +      + ++ G E  G++     
Sbjct: 156 QTIE----------YLKEKGCWVVGADAAAPQNLWQADLQGPLALVIGSEGKGISRLVRE 205

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++  P+     SLN S A  ++ +E +   
Sbjct: 206 KCDFLVRLPMQGKIGSLNASVAAAVLCYEVLRQR 239


>gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
          Length = 239

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           IIL   +   N+G + R+  +F    + +   R    S     +SA A   I+++ +   
Sbjct: 92  IILDQIEDPHNLGAIIRSAESFGFDGVIIPERRSASVSPIVYKTSAGA---INNINIIMV 148

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            N   AI ++     ++Y            +           +++     V +I G E  
Sbjct: 149 KNTNRAIEEIKEAGFWVYGLAG---EASSPI-----------DQVDLKGKVCLIVGNEGK 194

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+       + +I+ P+     SLN S A  + ++E +  
Sbjct: 195 GLSRLVRENCDILINIPMKGFVNSLNASVASAIAMYEVLRQ 235


>gi|255089483|ref|XP_002506663.1| predicted protein [Micromonas sp. RCC299]
 gi|226521936|gb|ACO67921.1| predicted protein [Micromonas sp. RCC299]
          Length = 247

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 32/187 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VRV 73
            ++LV PQ+  N G +AR      +  L LV P     ++     +       +S  VRV
Sbjct: 72  AVVLVTPQIPGNTGTIARTCAAARVP-LHLVGPLGFDLTDAQLKRA--GLDYWNSVCVRV 128

Query: 74  FSNLK-------EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             +         +A+     + A +             +  A     R        ++FG
Sbjct: 129 HDDWDAFHAYWRDALGAPGRLVAFSK---------FGARPHAEEGAYRSGDW----LLFG 175

Query: 127 RERWGLTNEEIALS---NAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            E  GL             I   P++     SLN++ +  + V+E +          V  
Sbjct: 176 AETTGLPGAAHDACADSGGIRRIPIDETHVRSLNLAVSAGVGVYEALRQI---DGPPVHG 232

Query: 183 QNTPATK 189
            + PAT+
Sbjct: 233 TDEPATR 239


>gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           HCC23]
 gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           HCC23]
 gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           L99]
          Length = 251

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244


>gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 226

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 23/155 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      + Q  +V PRD     +  AR  +A     +  ++V +NL   +A
Sbjct: 85  PHNLGACIRTAAAMGV-QAVIV-PRDRSASLTPTARKVAAGGAEKVKFIQV-TNLARTLA 141

Query: 83  DL-----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L       +  T          +L   E A+ + +  FSG  V I+ G E  GL     
Sbjct: 142 HLKETTHVRVIGT----------MLD--ENALPIQKCDFSGA-VVIVMGAEDTGLRPITQ 188

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A  +     P++    SLN+S A  + ++E     
Sbjct: 189 AQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 223


>gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
 gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
          Length = 249

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA 160

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      ++  T A  R +++++                   + ++ G E  G+  
Sbjct: 161 RTLEEMKERGIWVVGTDASAREDYRNM--------------DGNMPLALVIGSEGKGMGR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242


>gi|308187856|ref|YP_003931987.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
 gi|308058366|gb|ADO10538.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
          Length = 394

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 14/164 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV 67
           Q + K  V+ L D     N+G + R+  +F +  L LVN      S  A  ++   A+ V
Sbjct: 242 QANTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV 300

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                      +AI+   F     A  +  +  V         L +     + + ++ G+
Sbjct: 301 -----------QAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAQLP-EKMVLVLGQ 348

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ER GL++      +  +S        SLN+S A  +++ E    
Sbjct: 349 EREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQ 392


>gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314]
 gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314]
          Length = 272

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 13/170 (7%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           NS    V + V+ +   N G + R         +            K   +SA +   + 
Sbjct: 114 NSRSRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVP 173

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGR 127
             R   N+ + +  L          R+    +LA      V  +       +    +FG 
Sbjct: 174 VARNV-NIDDVLGQL----------RSQGLQILATAADGEVDLDDAGELLSRPTAWLFGN 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  GL  E +A ++  +  P+     SLN++ A  + ++E  +       
Sbjct: 223 EAHGLGEELLAKADHRVRIPIRGRAESLNLATAASICLYESSKALFADEA 272


>gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 282

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 13/170 (7%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           NS    V + V+ +   N G + R         +            K   +SA +   + 
Sbjct: 124 NSRSRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVP 183

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGR 127
             R   N+ + +  L          R+    +LA      V  +       +    +FG 
Sbjct: 184 VARNV-NIDDVLGQL----------RSQGLQILATAADGEVDLDDAGELLSRPTAWLFGN 232

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  GL  E +A ++  +  P+     SLN++ A  + ++E  +       
Sbjct: 233 EAHGLGEELLAKADHRVRIPIRGRAESLNLATAASICLYESSKALFADEA 282


>gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
           C87]
 gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
           C87]
          Length = 249

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 17/165 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  ILILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  ++  T A N  +++ +               +  ++ I+ G E  G+
Sbjct: 157 LSKTIDELKENGFWVAGTEASNATDYRDL--------------QADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +       +  I  P+     SLN S A  LM++E       + E
Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRDETGE 247


>gi|319795689|ref|YP_004157329.1| RNA methyltransferase, trmh family, group 2 [Variovorax paradoxus
           EPS]
 gi|315598152|gb|ADU39218.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           EPS]
          Length = 153

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 35/168 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P++  N G V R   N   T L LV P      ++    +       +   V  +
Sbjct: 4   IVLVHPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMDDRLLRRA--GLDYHEYAEVKRH 60

Query: 77  LK-EAIADLHFIYA------TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +A+ D     A      TT   R        P +                ++FG E 
Sbjct: 61  ADWQALIDAESAAADRMFALTTRGTRAVHDVRFQPGDW---------------LVFGSET 105

Query: 130 WGLTN------EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL         E       +  P+     SLN+S AV + V+E    
Sbjct: 106 SGLPPAVRDGFAEPQR----LRLPMREGQRSLNLSNAVAVTVFEAWRQ 149


>gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
 gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
          Length = 243

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 21/155 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VI+L D Q   N+G + R   +F    + L        +EK   S+  A   I    +  
Sbjct: 102 VIVLDDVQDPGNVGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIP--VIRG 159

Query: 76  NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +++  +  L    + I AT+  N +  + +  P   A              ++FG E  G
Sbjct: 160 DVQAMLMSLKQKGNRILATSLHNASALREIAVPDAFA--------------LVFGNEGKG 205

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ E + L++  +   ++  F SLN++ A  + ++
Sbjct: 206 VSEEVLRLADTHVFIEMH-TFESLNVAVAAGICMY 239


>gi|300858366|ref|YP_003783349.1| hypothetical protein cpfrc_00948 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685820|gb|ADK28742.1| hypothetical protein cpfrc_00948 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330634|gb|ADL20828.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276319|gb|ADO26218.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           I19]
          Length = 285

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 21/165 (12%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR------V 73
           V+     N G + R         +            KA  SSA +   I  VR      V
Sbjct: 135 VETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRV 194

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +LK   A    I ATTA+        ++   A  VL+           + G E  GL 
Sbjct: 195 WDSLK---ARGLKILATTAQGE------ISLDNAGDVLS------HPTAWLMGNEAHGLE 239

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
              +  ++  +  P+     SLN++ A  + ++E  +  +     
Sbjct: 240 ESLMEKADHRVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNH 284


>gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii
           C-113]
          Length = 284

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 32/165 (19%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G   R      +  + +   R    +  AR  ++ A   +  VRV         
Sbjct: 130 QDPHNLGACLRTAEAAGVHGVVVPKDRAAGLTAVARKVASGAAERVPLVRVT-------- 181

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----------QNVGIIFGRERWG 131
                        N  + + A +E  + L   +  G             +G++ G E  G
Sbjct: 182 -------------NLARVMRALRERGLWLVGAVVGGTHATLYETDLQGPLGLVLGAEDRG 228

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L        + ++  P+     SLN+S A  + ++E      ++ 
Sbjct: 229 LRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRGLAP 273


>gi|302206081|gb|ADL10423.1| Putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           C231]
          Length = 289

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 21/165 (12%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR------V 73
           V+     N G + R         +            KA  SSA +   I  VR      V
Sbjct: 139 VETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRV 198

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +LK   A    I ATTA+        ++   A  VL+           + G E  GL 
Sbjct: 199 WDSLK---ARGLKILATTAQGE------ISLDNAGDVLS------HPTAWLMGNEAHGLE 243

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
              +  ++  +  P+     SLN++ A  + ++E  +  +     
Sbjct: 244 ESLMEKADHRVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNH 288


>gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
 gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
          Length = 244

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 62/172 (36%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P +++L       N+G   R+     +  + +   R    +  A+  ++ A
Sbjct: 86  PDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAGVHAIIVPKDRSAPLNATAKKVASGA 145

Query: 65  DCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +  +RV +    L+  + + + ++  T                 A     +      
Sbjct: 146 AENVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTVFQSKMTGP 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242


>gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
           ATCC 49946]
 gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
           ATCC 49946]
 gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 245

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 24/177 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S + P ++IL       N+G   R+     +  + +   R    +  A+  ++ A
Sbjct: 86  PDLLASLENPFLLILDGVTDPHNLGACMRSADAAGVHAVIVPKDRSAALNATAKKVASGA 145

Query: 65  DCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
              I      +  R    L+EA     +I  T                 A     +    
Sbjct: 146 AEHIPLIRVTNLARTMRVLQEA---NVWIVGTAG--------------EADHTLHQSRMT 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    V 
Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRSVK 245


>gi|242241345|ref|YP_002989526.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
 gi|242133402|gb|ACS87704.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
          Length = 230

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 88/208 (42%), Gaps = 33/208 (15%)

Query: 1   MTP----YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP        + N+ +  + + ++      N+  V R      + Q+  V     WP+ 
Sbjct: 1   MTPQRYARIRDMLNNRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV-----WPTN 55

Query: 56  KARSS---SANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAA 108
           + ++    +A ++  +  V+   ++ +A++ L      + AT     N   S +  ++  
Sbjct: 56  RMKTLVSTAAGSNSWV-QVKTHRSIHDAVSHLKSQGMQVLAT-----NLSASAVDFRD-- 107

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                 +   +   I+ G+E+ G++ E +AL++  I  P+  +  SLN+S A  L+++E 
Sbjct: 108 ------VDYTRPTCILLGQEKTGISAEALALADQDIIIPMIGMVQSLNVSVASALILYEA 161

Query: 169 MENSIVSSEKNVKEQNTPATKGELLSFL 196
                ++     + + +P  + E    L
Sbjct: 162 QRQRQLAGMY--QREISPLDEEEQQRLL 187


>gi|239980742|ref|ZP_04703266.1| rRNA methylase [Streptomyces albus J1074]
 gi|291452600|ref|ZP_06591990.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291355549|gb|EFE82451.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 261

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 38/180 (21%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L+ + + PV++L  P+   N G V R    F  + +    P D W     R  +     
Sbjct: 111 ALRGARRTPVVVLDQPRHLGNAGAVVRLAAGFGASGVVTTGPLDPWHPTVVRGGA----- 165

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN------ 120
                            LHF  A           +  P+  A  L      G +      
Sbjct: 166 ----------------GLHFATAVA--------PLEVPELPAGPLFALDPEGADIRGLTL 201

Query: 121 ---VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                + FG ER GLT E  A ++ +++ P+ P   S N++ +V + ++     S  +  
Sbjct: 202 PDDALLAFGSERHGLTAELRARADHLVALPMRPQVSSYNLATSVGMTLFHWASASGAAPA 261


>gi|193213878|ref|YP_001995077.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
           35110]
 gi|193087355|gb|ACF12630.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
           35110]
          Length = 179

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 9/145 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R      + ++ +       P  +    +  A   +D   V   L EA+ADL  
Sbjct: 38  NVGSIFRTCDAARIQKVIITGYTATPPRPQIDKVALGATETVDWEYVADPL-EALADL-- 94

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                 +++    + L   E A   +E       + ++ G E  G+ +E +   +  +  
Sbjct: 95  ------KDQGVKIAALEITENARNYDELSAEDFPLCLVLGNEVTGIDDEVLQECDFALEI 148

Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
           P      SLN++ +  + ++E +  
Sbjct: 149 PQYGTKHSLNVAVSAGIAIFEAVRQ 173


>gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
 gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
          Length = 245

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R           +V P+D     +  AR  +  A 
Sbjct: 89  LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 147 ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRL 244


>gi|85858093|ref|YP_460295.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721184|gb|ABC76127.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
          Length = 272

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 65/178 (36%), Gaps = 26/178 (14%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +   A+GP+++L +     N+G + R    F    + L        + K   ++  +   
Sbjct: 115 MAKGARGPLLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFH 174

Query: 68  I------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +      D  +V   +KE       +  ++ R                        G+  
Sbjct: 175 VPFLFGADLSKVLPRVKENF----HVVGSSVRTGTLPH----------------ACGEKT 214

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            ++ G E  GL    + L++     P   +  SL++ QA  ++++EC+ ++   + + 
Sbjct: 215 ALLLGSESHGLPETLLKLTDEQWHIPRRGVGESLSLPQAAAILMYECVRSAPSRAARP 272


>gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 21/187 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +  +    V +L   +   N G V R         + L +      + K+  +S  + 
Sbjct: 114 EDILAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSH 173

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV 121
             +        +++A+  L          R+    VLA   A     +        G   
Sbjct: 174 FHLPVAVGVP-VEQAVQGL----------RDAGVRVLAADGAGEQDLDDELDAGTMGGPT 222

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             IFG E WGL  E  AL++A++  P++    SLN++ A  + ++        +  +   
Sbjct: 223 AWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLY------ASARAQRAG 276

Query: 182 EQNTPAT 188
            +  PA+
Sbjct: 277 AKGAPAS 283


>gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 250

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 15/172 (8%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEQLSFDDDFILVFDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAG 150

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A   +    + +     +A L  I           K  L      +    + F   N 
Sbjct: 151 MGAQFSLKFGYITN-----LAKLKNIA-----KLQQRKIWLTTPHQGVSCYAKEFKLANS 200

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++FG E  G+ +  +         P      SLN++QA  + ++E +   +
Sbjct: 201 ILVFGEEANGIEDFSVGQ---KTMIPTLSDIESLNVAQAATIYLFEGLRQRL 249


>gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           salanitronis DSM 18170]
 gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           salanitronis DSM 18170]
          Length = 246

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 34/179 (18%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P L    K P+ IL      V      N G +AR      +  + + +      +  A  
Sbjct: 88  PFLFEQGKNPLFILLDGITDVR-----NFGAIARTCECAGVDAIIIPSKNSVSVNADAVK 142

Query: 60  SSANADCVIDSVR---VFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
           +SA A   +   R   + S    LKE  +    I AT               E       
Sbjct: 143 TSAGALLSLPVCRENNILSTIRFLKE--SGFKIIAAT---------------EKGDYDYT 185

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +        II G E  G+  E +AL +  I  P+     SLN+S A  +++++ +E  
Sbjct: 186 KADYHSPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYKAIEQR 244


>gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 270

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 20/177 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P A  L  + +  V++L D     N+G + R+          L++PR   P   ++   S
Sbjct: 110 PAATVLAGARR--VVVLEDLVDHTNVGAIFRSAAALGW-DAVLLSPRCADPLYRRSIKVS 166

Query: 62  ANADCVIDSVRV--FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A   +   RV  +++  E +AD  F   A T                     + + + 
Sbjct: 167 MGAVFRLPWARVDDWASTPELLADAGFTAVAMTLGEGAVP-------------IDEVDTD 213

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + + ++ G E  GLT    + S    + P+     SLN++ +V +  W+    S+ +
Sbjct: 214 RPLALVVGSEGHGLTRHWESASPVRATIPMAEDIDSLNVAASVAVACWQLRGPSLRT 270


>gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 4b H7858]
 gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
 gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 4b H7858]
 gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
          Length = 251

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244


>gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
           L37603]
 gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
           L37603]
          Length = 248

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VIIL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VIILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E  ++  ++  T A N  +++ +               +  ++ I+ G E  G+
Sbjct: 157 LAKTIDELKSNGFWVAGTEANNATDYRDL--------------EADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +       +  I  P+     SLN S A  LM++E       +  K
Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHSNGNK 248


>gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262]
 gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e]
 gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein
           [Listeria monocytogenes Clip81459]
 gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S]
 gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161]
 gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL
           J2-064]
 gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL
           J1-208]
 gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL
           J2-003]
 gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL
           J1-175]
 gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
 gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
 gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e]
 gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262]
 gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
 gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
 gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220]
 gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           Scott A]
          Length = 251

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244


>gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2]
          Length = 243

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 46/195 (23%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS----SANADCVIDSVRVFSNLKEA 80
             N+  V R      + ++  V     W  E+        +  +   +       +L  A
Sbjct: 30  PHNVSAVVRTCDAIGIHRVHTV-----W--EEKYQFRGDTAMGSQQWVRQTN-HDSLGNA 81

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I           + +     V    + A+   E +   +   IIFG+ER+G T+E IA++
Sbjct: 82  IG--------ALKQQGMQVLVTHLSDTAVGFRE-VDYTKPTAIIFGQERYGATDEAIAMA 132

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD--Y 198
           +  I  P+  +  SLN+S A  L+++E                       EL    D  +
Sbjct: 133 DQDIIIPMAGMVQSLNVSVAAALVLYEAQRQR------------------ELAGMYDVEH 174

Query: 199 L-----EISLEERGY 208
           L     +  L ERGY
Sbjct: 175 LPEEECQKLLFERGY 189


>gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
 gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617]
          Length = 245

 Score = 64.3 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 24/177 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  ++ A
Sbjct: 86  PDLLASLDNPFLLILDGVTDPHNLGACMRSADAAGVHAIIVPKDRSAALNATAKKVASGA 145

Query: 65  DCVIDSVRVFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
              I  VRV +       L+EA     +I  T                 A     +    
Sbjct: 146 AEHIPLVRVTNLARTMRVLQEA---NVWIVGTAG--------------EADHTLYQSKMT 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    V 
Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRSVK 245


>gi|237752582|ref|ZP_04583062.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376071|gb|EEO26162.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 153

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 17/160 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ---LRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           I+L  P++ +N G + R            L L+ P     ++K    +       + + V
Sbjct: 5   IVLHQPRIPQNTGNIGRLC----FASNTILHLIYPLGFSLTQKELKRA--GMDYWEHLEV 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +       AD    + +   + N     L  K         + +G    + FGRE  GL+
Sbjct: 59  YE-----YADTESFFKSYFIDSNLPHFFLTTKTKIPYYKAPMQAGAY--LHFGREDAGLS 111

Query: 134 NEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E ++ +     + P+     SLN++ +V ++++E +  +
Sbjct: 112 QEILSANQEYCYTIPMQNNARSLNLATSVGIVLYEGIRQA 151


>gi|167753955|ref|ZP_02426082.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
 gi|167658580|gb|EDS02710.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
          Length = 228

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IL +     +N   + R    F +  +  +  R  +            D  ID  R    
Sbjct: 44  ILTENTYHAQNASALVRHCEAFGVQDIHTIETRCKFNPNVNIVR--GTDKWIDLHR-HRT 100

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             EAIADL      I ATT    +                    +     ++FG E  G+
Sbjct: 101 TAEAIADLKGRGYRIVATTPHREDKTPETFD------------VAASPFVLVFGTEHAGI 148

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++E +A ++  +  P+  +  SLN+S +  ++++  
Sbjct: 149 SDEIVAAADEFLRIPMCGMVESLNVSASAAILIYML 184


>gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
          Length = 249

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIADL 84
           N G +AR      +  + +  P  G  S    A  +SA A   I   RV +++  AI  L
Sbjct: 109 NFGAIARTAECAGVDAIII--PERGSVSVGGDAIKTSAGALHRIPVCRV-TSIPGAIRSL 165

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                           ++A  E A  L   +     +GI+ G E  G + + + +++ I+
Sbjct: 166 Q----------EYGIRIVAASEKAADLYTDVPMKLPLGIVMGAEDVGPSPDTLRMADGIV 215

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + P      SLN+S A  ++++E +    + S
Sbjct: 216 AIPQMGAIGSLNVSVAAGIVIYEVVRQQRLQS 247


>gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
 gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
          Length = 243

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 22/162 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-F 74
           V+ L + Q   N+G + RA  +FN      V     + ++K   SS  A   ++ V   +
Sbjct: 98  VVFLDNVQDPGNVGTIIRAAKSFNFDT---VVSNVNFYNDKIVRSSQGALFTVNLVNYAY 154

Query: 75  SNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            NL   +         IY T+    +              +N+  F  + + IIFG E  
Sbjct: 155 DNLHSVLKKYKQNGFKIYCTSLSKNSVP------------INKISFENEKIVIIFGNEGS 202

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G +   I +++ ++  P+   F SLN++    ++++E  + +
Sbjct: 203 GASETSIKIADKLVYVPI--DFESLNVAVCAGIVLYEANKKA 242


>gi|215404054|ref|ZP_03416235.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
 gi|289745918|ref|ZP_06505296.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
 gi|289686446|gb|EFD53934.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
          Length = 259

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFN--LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           + V+ +   N G V R        +   R+       P       ++        V V  
Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAVADHRV----GDHPLGGKCLRASTGSIFAIPVVVAP 167

Query: 76  NLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++  AIADL      + AT               E A+   +R+ + +    +FG E  G
Sbjct: 168 DVGAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEAHG 215

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+ E  AL++  +  P++    SLN++ A  + ++E    
Sbjct: 216 LSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 255


>gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 249

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLA 160

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      ++  T A  R +++++                   + ++ G E  G+  
Sbjct: 161 RTLEEMKERGIWVVGTDASAREDYRNM--------------DGNMPLALVIGSEGKGMGR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242


>gi|294787535|ref|ZP_06752788.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315226880|ref|ZP_07868668.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294484891|gb|EFG32526.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315121012|gb|EFT84144.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 330

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 8/154 (5%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA 82
             N G + R      L  + LV+      + K   S+A +   +  +R  +      A  
Sbjct: 177 PGNAGTIIRLADAAGLDGVILVDDCVDETNPKVVRSTAGSLFHLPIIRMGIDDFFAFAQE 236

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-----IIFGRERWGLTNEEI 137
               + A  A   +    V                 +  G     ++FG E  GL +  I
Sbjct: 237 HGATVVAADAYGTDQV-PVKELPAFLDEWRRTGQDQEKAGSAPTIVLFGNEARGLDDPLI 295

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 +  P+     SLN++ +  ++++     
Sbjct: 296 NRCQEAVRIPLYGKAESLNVAMSAAVILYSLAMA 329


>gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 278

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
                +++L + Q   N+G + R+   F    + L  PR   P  +     +    +   
Sbjct: 125 DIGNLILVLAEVQDPTNLGSILRSAAAFGCRGVVL-GPRCADPFARRVIRVSMGSALTIP 183

Query: 71  VRVFSNLK---EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           + V SNL    E+IA+  + + AT   +R            A  L +         ++ G
Sbjct: 184 ITVSSNLACDLESIAEKGYQLTATVLSDR------------AKKLGDLQLDVPR-ALLLG 230

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            E  GL  E IA+    ++ P+     SLN++ A  ++++    + +
Sbjct: 231 SEGNGLAPEWIAMCREHVTIPMAWGTDSLNVAIAAAVLLYHFSTSRL 277


>gi|238750786|ref|ZP_04612284.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238710930|gb|EEQ03150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 230

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WP+ +  +   SA        V+  +++ +AI 
Sbjct: 30  PHNVSAIIRTADAVGIHQVH-----AIWPTTEMYTRLSSAAGSNSWVQVKTHAHITDAI- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  +++          + A+   E I       I+ G+E+ G++ E +AL++ 
Sbjct: 84  -------TYLKSQGMQILATHLSDKAVDFRE-IDYTLPTCILMGQEKTGISEEALALADK 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +      +   P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAQSALPKDEQQRLLF 188


>gi|254468187|ref|ZP_05081593.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13]
 gi|207086997|gb|EDZ64280.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13]
          Length = 154

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 64/163 (39%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L +P++  N G + R   N N  +L LV P     SEK    +      I      ++
Sbjct: 4   IVLYEPEIPPNTGNIIRLCSNSNC-KLHLVKPLGFELSEKTLRRA--GLDYIKHELFVIY 60

Query: 75  SNLKEAI---ADLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
            N  + +    +++  +  + + +N + SV   P +                 +FG E  
Sbjct: 61  ENYSDFLSKNKNINL-FGISTKGKNYYHSVSFKPDDF---------------FMFGPETR 104

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL +        N ++  P+     S+N++  V ++++E    
Sbjct: 105 GLPDAIRNQIEPNHLLRVPMAENSRSINLANTVSIILYEAWRQ 147


>gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 230

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WP+ +  +   SA        V+  +++ +AIA
Sbjct: 30  PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSSAAGSNSWVQVKTHTHISDAIA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        +++N         + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 85  HL--------KSQNMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITEEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +      +   P  + + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRAKSVLPEDEQQRLLF 188


>gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland
           1988]
 gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28]
          Length = 221

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 72  IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 131

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 132 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 177

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 178 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 214


>gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
 gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
          Length = 257

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 27/173 (15%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++Q      V++L+  +   N+G + R+     +  L LV       S +   +S     
Sbjct: 102 EVQLPQDPLVLVLLGLEKPGNLGAILRSADGAGV-DLVLVAEGVDLYSPQVIRNSTGVVF 160

Query: 67  VI-------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +       +    F  L+E    L  + AT             P+   +   E    G 
Sbjct: 161 SLPVYPVAEEEAARF--LEE--KGLFLVAAT-------------PRGEKVYWEENYQRG- 202

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            V  + G E  GL+   +A +   +  P+  +  SLN+S +  L+++E +   
Sbjct: 203 -VAFLLGTEDEGLSEAWLARAGVRVRIPMRGVADSLNVSVSAALLLYEALRQR 254


>gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15]
          Length = 245

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 24/174 (13%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           QL  S K P +++L       N+G   R      + Q  +V P+D     +  AR  +  
Sbjct: 88  QLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGV-QAVIV-PKDKSASLTPVARKVACG 145

Query: 64  ADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           A   +  VRV +NL   +  L     ++  T               EA   L +  F G 
Sbjct: 146 AAETVPFVRV-TNLARFLRSLQDQGVWLIGTAG-------------EADATLYQADFKG- 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            V ++ G E  G+        + +I+ P+     SLN+S A  + ++E +   +
Sbjct: 191 PVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEALRQRL 244


>gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 253

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 23/178 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L + ++GP ++LV        N+G   R         L ++ P+D     +   R  + 
Sbjct: 88  ELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVAC 145

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  VI  V V +    L++      ++  T               EA + L ++  +G 
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGP 192

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            + II G E  G+        + ++  P+     SLN+S A  + ++E +    V + 
Sbjct: 193 TI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 249


>gi|38233828|ref|NP_939595.1| putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200089|emb|CAE49769.1| Putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae]
          Length = 156

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 19/166 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+  +P +  N G   R       + L L+ P      +K    +      +  V + SN
Sbjct: 6   IVFDNPVIPNNTGNAIRTSAVTGAS-LHLIEPLGFNFEDKNLKRAGLDYHDLADVHIHSN 64

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +  L    ++A ++               A      I       ++FG E  GL  
Sbjct: 65  FDACMNALPHSRVFAFSS--------------HATTWYTDIEYKDGDVLLFGTEPTGLPT 110

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E +        +  P+ P   S+N+S    + ++E          +
Sbjct: 111 EHLEHPRITQQVRIPMLPARRSMNLSNCASIAIYEAWRQLGFEGAQ 156


>gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 251

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244


>gi|119775658|ref|YP_928398.1| putative methyltransferase [Shewanella amazonensis SB2B]
 gi|119768158|gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 333

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 14/149 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    +V    G   S  A  ++      ++ +R    L +A+  
Sbjct: 197 PHNLGAIMRSCAHFGVAG--IVMTEAGLLQSGAAARTAEGGMEHVEGIR-CDRLTDALQL 253

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      R+   S++           R      V ++FG E  G++    + ++  
Sbjct: 254 C----------RDAGYSIITTSSHGGESLYRSKLPARVVVVFGEEMDGVSKAVASRADIG 303

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  P   L  SLN+S A  L++ E     
Sbjct: 304 VQIPGTGLVESLNVSVAASLILGEWYRQQ 332


>gi|254670213|emb|CBA05373.1| putative RNA methyltransferase [Neisseria meningitidis alpha153]
 gi|325130237|gb|EGC53007.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           OX99.30304]
          Length = 261

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  +   
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFL--- 165

Query: 71  VRVFS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             ++   +L+  +A     ++AT  R              A++ NE +   +    +FG 
Sbjct: 166 SEIYPQADLEIWLARYEDRVFATALREEK----------QAVLYNEDLR--EPTAWVFGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 246

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 25/174 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
              +   GP  +LV    Q   N+G   R+     +    ++ PRD     +      S+
Sbjct: 89  ACLDGLSGPAFLLVLDQVQDPHNLGACLRSAEAAGVHG--VIAPRDRAAGLTPVVHKVSS 146

Query: 63  NADCVIDSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A     + RV     +NL   +A L        R+R  +    A +  A      +   
Sbjct: 147 GA-----AARVPYFQVTNLARTLAGL--------RDRGIWLVGAAGEAGAAHWEADLT-- 191

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + +  G E  GL        + ++  P+     SLN+S A  +++WE +   
Sbjct: 192 GPLALCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNVSVATGVVLWEALRQR 245


>gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 249

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L + +   N+G + R         + +   R    +     +S  A   I  V+V +  
Sbjct: 101 VLDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLA 160

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      ++  T A  R +++++                   + ++ G E  G+  
Sbjct: 161 RTLEEMKERGIWVVGTDASAREDYRTM--------------DGTMPLALVIGSEGKGMGR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEIYR 242


>gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 238]
 gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 238]
          Length = 263

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 17/164 (10%)

Query: 8   LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANAD 65
           + +    P ++L+D      N+G + R+   F   Q  +   R   P   A + +++ A 
Sbjct: 107 MGDGVNPPRVVLLDKVTDPHNVGAILRSAEVFG-AQAVIAMNRHAAPETGALAKTASGAM 165

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VG 122
                +RV  NL +AI +L                VL     A    E++  G+    + 
Sbjct: 166 ERQPYLRV-RNLADAIVELQ----------AMGYLVLGLDGEAEQTIEQVVEGKRDRAIA 214

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL ++     +A++       F SLN+S A  + ++
Sbjct: 215 LVLGAEGPGLRDKTKETCDALVRIDFAGEFGSLNVSNAAAVALY 258


>gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804]
 gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii]
          Length = 245

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           ++ ++ +GP ++LV        N+G   R      +    +V PRD     +   +  + 
Sbjct: 87  EVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVH--AVVAPRDRAVGLNSTVQRVAC 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+       ++  T               + A      + + Q
Sbjct: 145 GAADTVPYITVTNLARTLRGLKERGVWVVGT--------------DDQAAGSLHTVDARQ 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  + G E  G+        + +++ P+     SLN+S A  + ++E +   
Sbjct: 191 PMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYESVRQR 243


>gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 250

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 23/179 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L + ++GP ++LV        N+G   R         L ++ P+D     +   R  + 
Sbjct: 88  ELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVAC 145

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  VI  V V +    L++      ++  T               EA + L ++  +G 
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGP 192

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            + II G E  G+        + ++  P+     SLN+S A  + ++E +       + 
Sbjct: 193 TI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKRKP 250


>gi|260060604|ref|YP_003193684.1| putative SpoU rRNA methylase family protein [Robiginitalea
           biformata HTCC2501]
 gi|88784734|gb|EAR15903.1| putative SpoU rRNA methylase family protein [Robiginitalea
           biformata HTCC2501]
          Length = 178

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 16/167 (9%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             + + K P + IL + +   N+G V R    F + ++ L       P +  R ++  A 
Sbjct: 16  AFKEAPKTPAVLILDNIRSLHNVGSVFRTADAFRVEKVWLCGITAQPPHKDIRKTALGAT 75

Query: 66  CVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVG 122
             +        L+  + +   H  +A            L   E A+ L E R   G+   
Sbjct: 76  ESVAWEYAGDTLQVLDRLETTHECWA------------LEQAEGAVSLGEFRPEPGKRYA 123

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            + G E  G++   I     ++  P      SLNIS A  +++W+  
Sbjct: 124 FVLGHEVKGVSQAVIDRCRGVVEIPQLGTKHSLNISVAAGVLLWDFY 170


>gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4]
 gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4]
          Length = 279

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 12/158 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G V R +     + + LV       + +   ++  +   +  V +   
Sbjct: 133 VALDRVRDPGNLGTVIRTIDAVGASGVVLVGDCTDPFAVETVRATMGS---LFHVPIIKT 189

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            K+A  D           +     V+       V        + V ++ G E+ GL    
Sbjct: 190 AKDAFLDF---------AKKWPGPVVGTHLEGSVDYRTADYAEPVLLLMGNEQQGLDASM 240

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             +   +I  P      SLN++ A  + ++E   N + 
Sbjct: 241 TRVCKTLIRIPQVGQADSLNLAVATGITLYEIRRNHLE 278


>gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 299

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 17/172 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            Q+  +    V +L   +   N G V R         + L +      + KA  +S  + 
Sbjct: 128 EQILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 187

Query: 66  CVIDSVRVFSNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +        +++A+A      +  + A  A +R+    +           ++   G  
Sbjct: 188 FHLPVAIGVP-VEQAVAGLRGTGVRVLAADGAGDRDLDDEL-----------DKGTMGGP 235

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +FG E WGL  E  AL++A++  P++    SLN++ A  + ++      
Sbjct: 236 TAWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQ 287


>gi|332159669|ref|YP_004296246.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318603765|emb|CBY25263.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325663899|gb|ADZ40543.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860934|emb|CBX71212.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           W22703]
          Length = 219

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  + R      + Q+        WP+    +    +A ++  +  V+  S++ +AI
Sbjct: 19  PHNVSAIIRTADAVGIHQIH-----AIWPTPAMYTRLSSAAGSNSWV-QVKTHSHITDAI 72

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                   T  +++          + A+   E I   +   I+ G+E+ G++ E +A+++
Sbjct: 73  --------THLKSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISKEALAMAD 123

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
             I  P+  +  SLN+S A  L+++E       +      +     ++ E    L
Sbjct: 124 KDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRTQSVL--SEDEQQRLL 176


>gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I  V+V +  
Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLA 160

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E      ++  T A  R +++S+                   + ++ G E  G+  
Sbjct: 161 RTLDEMKERGIWVVGTDASAREDYRSM--------------DGKMPLALVIGSEGRGMGR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242


>gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103]
 gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103]
          Length = 259

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 24/174 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+          +V P+D     +  A+  ++
Sbjct: 101 PDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG-AHAVIV-PKDRSAPLNATAKKVAS 158

Query: 63  NADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  +RV +    L+  + + + ++  T                 A     +    
Sbjct: 159 GAAENVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTVYQSKMT 203

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 204 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 257


>gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 249

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIADL 84
           N G +AR      +  + +  P  G  S    A  +SA A   I   RV +++  AI  L
Sbjct: 109 NFGAIARTAECAGVDAIII--PERGSISVGGDAIKTSAGALHRIPVCRV-TSIPGAIRSL 165

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                           ++A  E A  L   +     +GI+ G E  G + + + +++ I+
Sbjct: 166 Q----------EYGIRIVAASEKAADLYTDVPMKLPLGIVMGAEDVGPSPDTLRMADGIV 215

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + P      SLN+S A  ++++E +    + S
Sbjct: 216 AIPQMGAIGSLNVSVAAGIVIYEVVRQQRLQS 247


>gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 249

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+     +    +V PRD     +   R  +  A  V+  ++V +
Sbjct: 104 VLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDKATGLTPIVRKVACGAAEVVPLIQVTN 161

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +L+E      +I  T                 A     +      + ++ G E  G+
Sbjct: 162 LARSLRELQERGVWIVGTAG--------------EADHDVYQAKLTGPMALVMGAEGKGM 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++S P+     SLN+S A  + ++E +   
Sbjct: 208 RRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQR 247


>gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
           NaphS2]
 gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
           NaphS2]
          Length = 278

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 11/148 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    F    L +   R    +      S+ A   +   RV +NL  A+ +L
Sbjct: 133 SGNLGALMRTAAFFGAHGLIIPKDRSAGITPTVLKRSSGAHTKLPVARV-TNLSRALNEL 191

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                    +RN    + A  E A          + + ++ G ER GL+       + ++
Sbjct: 192 ---------SRNELWIMGAAGE-AEESIYDFDWRRPLVLVLGNERKGLSPSARKQCHGLV 241

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
           S P      SLNIS A  +++ E     
Sbjct: 242 SIPSPGNTDSLNISVAGGVILSEICRQR 269


>gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
           halophilus Nc4]
 gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
           halophilus Nc4]
          Length = 249

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 37/180 (20%)

Query: 7   QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
            L ++ K P  ++IL   Q   N+G   R      +    ++ P+D     +   R  ++
Sbjct: 88  DLLDNLKAPPLLLILDGVQDPHNLGACLRTAEAAGVHG--VIAPKDRAVGLTAAVRKVAS 145

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--- 119
            A   +  VRV                      N  + +   +E  + L   +  G    
Sbjct: 146 GAAERVPFVRVT---------------------NLARLMRKLRERGLWLVGTVVKGGGSL 184

Query: 120 -------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   +G++ G E  GL        + ++  P+     SLN+S A  + ++E     
Sbjct: 185 YNTDLKGPLGLVLGAEDRGLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 244


>gi|223986174|ref|ZP_03636195.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM
           12042]
 gi|223961882|gb|EEF66373.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM
           12042]
          Length = 169

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-- 72
           ++L +P++ +N G + R     N    +L L+ P      E+    S       + ++  
Sbjct: 4   VVLYEPEIPQNTGNIMRTCVAANC---RLHLIEPLGFSLDEQKIRRS--GMDYREKLQMS 58

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-EAAIVLNERIFSGQNVGIIFGRERWG 131
           V+ +            A  A+N +     L    +      +   + +++ ++FGRE  G
Sbjct: 59  VYPDWA----------AFCAQNPDGEFYFLTRYGKQPPASFDYTRTEKDIYLVFGRESTG 108

Query: 132 LT----NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +      + +     +   P+     SLN+S  V + V+E +  
Sbjct: 109 IPKAILRDHLDRCARL---PMVADARSLNLSNCVAICVYEVLRQ 149


>gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
           S4-120]
 gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
           S4-120]
          Length = 251

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 208 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244


>gi|297182196|gb|ADI18367.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
          Length = 260

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 26/170 (15%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P    +  GP+++L +     N G + R+   F  T   +V       + K   ++A + 
Sbjct: 105 PMDLATTTGPLLVLAEVSDPGNAGTLMRSAEAFGATG-VVVAGGVDPYNPKLVRAAAGSS 163

Query: 66  CVIDSVRVFSN-------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             +    V  +       L+EA       +AT  R        L+P E          S 
Sbjct: 164 FRVPFA-VVDDPMAALRILEEAGYGC---WATVPRGG------LSPAEVP--------SD 205

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             V II G E  GL++E +A     +S P      SLN++ A  + + + 
Sbjct: 206 GPVAIILGNEPHGLSDEVVAACVGTVSVPTVGGVESLNVAIAGSIALHDL 255


>gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato T1]
 gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
 gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
 gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato T1]
          Length = 253

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 23/177 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L + ++GP ++LV        N+G   R         L ++ P+D     +   R  + 
Sbjct: 88  ELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVAC 145

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  VI  V V +    L++      ++  T               EA + L ++  +G 
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGP 192

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + II G E  G+        + ++  P+     SLN+S A  + ++E +    V +
Sbjct: 193 TI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 248


>gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 269

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 20/162 (12%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  VII  +VD     NIG + R+     +  + L+       + +A   S  A  ++ 
Sbjct: 119 ARRIVIIDGVVDTT---NIGAIFRSAAALGIDAVLLMRNSCSPLNRRAIRVSMGAVFLVP 175

Query: 70  SVRVFSNLKE-AIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +   L + A      +  A T  + +    VL  +               + I+ G 
Sbjct: 176 WTWLDGPLSDLARWGFRTVAMALTDNSISIDDPVLTTE-------------PKLAIVMGT 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E  GL++E IA ++ ++  P++    SLN++ A  +  W+  
Sbjct: 223 EGDGLSHERIAEADYVVRIPMSHGVDSLNVAAASAIAFWQLR 264


>gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 251

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + +I  P+     SLN S A  L+++E   
Sbjct: 208 RLVREKCDFLIHLPMRGKVTSLNASVAASLLLYEVYR 244


>gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
           Nor1]
 gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
           Nor1]
          Length = 270

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            LQ+S +  +++L + Q   N+G V R         + L        S K   ++  +  
Sbjct: 111 DLQSSDRELIVVLDNVQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMGSLF 170

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +    V + + E       + A           +LA    +  L   +     V I+FG
Sbjct: 171 HLP---VITGVAE-----QEVAAF---LERQGIRLLATALDSSSLYHDVDLRSPVAIVFG 219

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            E  G++   +  ++  +  P+     SLN++ A  ++++E      V+
Sbjct: 220 NEGAGVSKVILEKADERLYIPLYGRAESLNVAVAAAVILYEARRQRRVA 268


>gi|157963692|ref|YP_001503726.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|157848692|gb|ABV89191.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 228

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 73/184 (39%), Gaps = 19/184 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSA 62
           Q+ ++ +  + + +D     N I  V R      + ++  V     W   + R    +++
Sbjct: 11  QMLDNRQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV-----WSELEMRVSGNTAS 65

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +   RV  ++ +A+           R+++         + A+     I   +   
Sbjct: 66  GSQQWV-KTRVHQSMAQAVEAF--------RDQDMQILATTFSDTAVDFRA-IDYTKPTV 115

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +I G ER G++ E IA ++  I  P+  +  SLN+S A  L+++E       +     ++
Sbjct: 116 VIMGNERDGVSPEGIAAADQHIIIPMIGMVQSLNVSVAAALIMYEAQRQRTEAGMYGTRK 175

Query: 183 QNTP 186
            +  
Sbjct: 176 LDDA 179


>gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
           S4-171]
          Length = 190

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 41  IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 100

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 101 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 146

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 147 RLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 183


>gi|255994890|ref|ZP_05428025.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
           49989]
 gi|255993603|gb|EEU03692.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
           49989]
          Length = 280

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L + Q   N+G + R       T L L N      S+K   +SA                
Sbjct: 134 LCEIQDPRNLGAIMRTAAATG-TGLLLSNDSCDVFSDKVIRTSAGLFD------------ 180

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-----RIFSGQNVGIIFGRERWGLT 133
                + F+ AT+    +    +   +  A  LNE      +   +N  I+ G E  GL 
Sbjct: 181 ----RVGFVQATS--REDFLNRLKDRRVFAAALNEGMIYTNLNGMKNTCILMGNEGRGLY 234

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++  ++   +  P+     SLN+  A  L ++E     +++  +
Sbjct: 235 EDDFNIATDKVFIPMENDVDSLNVGVAASLFMFELNRKELINEGR 279


>gi|259503023|ref|ZP_05745925.1| RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168889|gb|EEW53384.1| RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 169

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 40/172 (23%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+L +P    N G +AR     N   T+L L+ P      +K    +       D V++ 
Sbjct: 5   IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----------GQNVG 122
              +L   +A +                   P    + +  +  S            +  
Sbjct: 60  YHDDLPAFLATI-------------------PDMKKLYIVSKFASRDYTDVDYTGTGDHY 100

Query: 123 IIFGRERWGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172
            +FG+E  GL    +       +  P N     +LN+S +  ++++E +   
Sbjct: 101 FLFGKETTGLPEAFMRKYPENAVRIPQNDDNIRALNLSNSAAIVIYEALRQQ 152


>gi|253584032|ref|ZP_04861230.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251834604|gb|EES63167.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 255

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 11/166 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + PY      + +  V++L       N+G + R         + L        +EK   S
Sbjct: 93  IYPYIKGALENLQKNVVVLDKIGDPGNLGTIIRVADAAGFKDILLTKGSVDCYNEKVVRS 152

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  +  + +   ++   +E IA L          +  +K V+   E   V   ++   + 
Sbjct: 153 SMGS--IFNMNIIYMEEEELIALL---------KKEEYKIVVTALEKNSVSYTQMKLAEK 201

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             I+FG E  G++   + + +  I  P+  +  SLN++ A  ++++
Sbjct: 202 NAIVFGSEGDGVSQNFLKVCDEKIIIPIYGIAESLNVAMASGIILY 247


>gi|296123594|ref|YP_003631372.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296015934|gb|ADG69173.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 285

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 58/175 (33%), Gaps = 35/175 (20%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L    K  +I+  +    EN+G + R    F  T L L        S +    S     
Sbjct: 131 ELTAFQKPLLIVCPNCDNPENLGAIIRIASAFRATGLLLGKACCDPFSRRVIRVSMG--- 187

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP-------KEAAIVLNERI---- 115
                               I+  T R   +    L         +    +L+E      
Sbjct: 188 -------------------NIFGLTIRESRHLDHDLQRLKTEFGFETMGAILSESAVSLK 228

Query: 116 --FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                  + ++ G E  GLT E +   N +++ P+ P   SLN++ A  + +++ 
Sbjct: 229 NVQRPHRLALLLGNEAEGLTTEWMDHCNHLVTIPMPPDVDSLNVAVAAGIFLYQL 283


>gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 247

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 23/177 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L ++ +GP ++LV        N+G   R           ++ P+D     +  A   ++
Sbjct: 86  ELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAH--AVIAPKDRAVGLNATAAKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E       +  TT              ++   L E  FSG 
Sbjct: 144 GAADTVPYITVTNLARTLRELKERDIMLIGTT-------------DDSEKGLYEADFSG- 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              ++ G E  G+        + ++  P+     SLN+S A  + ++E     I + 
Sbjct: 190 PAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARRQRIATG 246


>gi|255327010|ref|ZP_05368086.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
           ATCC 25296]
 gi|255296227|gb|EET75568.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
           ATCC 25296]
          Length = 155

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 29/159 (18%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLK-- 78
           P++  N G   R        +L LV P  G+  + A    A  D   +  V V   L+  
Sbjct: 9   PEIPGNTGNAIRLAAITG-AELHLVKPL-GFNFDDAHLRRAGLDYHDLAVVTVHETLEDA 66

Query: 79  -EAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            EA+A +  F + TTA                               +FG E  GL   E
Sbjct: 67  WEALAPERVFAFTTTASTSYADIEYR----------------PGDVFMFGPESVGLP-AE 109

Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171
           +   +  ++     P+ P   SLN++ +  + ++E    
Sbjct: 110 VQQ-DPHVTERVKIPMKPGRRSLNLANSASIAIFEAWRQ 147


>gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae R3021]
 gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 22.4-21]
          Length = 189

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 24/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R           +V P+D     +  AR  +  A 
Sbjct: 32  LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 89

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + DL      ++  T                 A     +      
Sbjct: 90  ETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 134

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + S
Sbjct: 135 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRLGS 189


>gi|42521894|ref|NP_967274.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39574424|emb|CAE77928.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 160

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 26/172 (15%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + N+ K   I+L++P++ +N G + R     N  +L +V       ++     +      
Sbjct: 1   MPNTEKLFRIVLIEPEIPQNTGNIGRTCVGTNC-ELHIVGKMGFEINDTNLKRA--GLDY 57

Query: 68  IDSVRVF--SNLKE---AIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  +     ++    + D   I+  TT   R  F+      +               
Sbjct: 58  WPHLTWYRHETFEDWWKHVEDPSRIWLFTTKTQRTYFEPQYQSGDW-------------- 103

Query: 122 GIIFGRERWGLTNEEIA-LSNAIISFPVNPL-FPSLNISQAVLLMVWECMEN 171
             +FG+E  GL  E +       ++ P+      SLN++ +V +  +E +  
Sbjct: 104 -FVFGKETKGLDPEFLQKHPQQTVTIPMIGEGARSLNLATSVAIAAYEGLRQ 154


>gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 257

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 22/175 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L + +   N+G + R      +  + +   R    +     +SA A   +   RV  
Sbjct: 100 ILVLDELEDPHNLGALLRTADAAGVHGIIIPTRRSVGLTPAVAKTSAGAIEYVPVARV-G 158

Query: 76  NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           NL +A+     A   ++    A  R+ F + L              SG  V ++ G E  
Sbjct: 159 NLVQALKQLKKAGC-WVTGAEAGGRDVFSADL--------------SGPRV-LVVGGEDK 202

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           GL        + I+S P+     SLN S A  ++++E     I     N ++ ++
Sbjct: 203 GLGRLIKETCDEIVSLPMLGKMSSLNASAAGSILMYEVRRQRISGHNDNSRQSSS 257


>gi|303251883|ref|ZP_07338054.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247037|ref|ZP_07529091.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649313|gb|EFL79498.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856489|gb|EFM88638.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 159

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 21/171 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L ++ P    W  +K R S        + V +  
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFAWDDKKLRRS---GLDYHEFVDIQK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + N ++ +             R   K + A        +  +       ++FG E  G+ 
Sbjct: 60  YKNFEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
              +     +  I  P+     S+N+S  V ++V+E             + 
Sbjct: 108 MAILDSLPMSQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQFGYQGSVPRQP 158


>gi|300718026|ref|YP_003742829.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299063862|emb|CAX60982.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 345

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 15/171 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P +  L N+ +   ++ ++      N+G + R+  +F    L LV+      S  A  ++
Sbjct: 186 PVSEWLSNAGEKDCVVALEQIGNPHNLGGMMRSCAHFGAKGL-LVDDASLLESGAAVRTA 244

Query: 62  -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A+ V           +AI+   F     A  +  +  V         L +     + 
Sbjct: 245 EGGAEHV-----------QAISGESFAEGLNAFRKAGYTIVTTSSHKGTPLAQAELPAKT 293

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           V ++ G+ER GL++      +  +S        SLN+S A  +++ E    
Sbjct: 294 V-LVLGQERDGLSDSTWQQGDLSVSIGGTGNVESLNVSVATGILLAEWWRQ 343


>gi|300714631|ref|YP_003739434.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299060467|emb|CAX57574.1| Putative tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 232

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP  + R+   SA        V+  SN+ +A+ 
Sbjct: 30  PHNVAAVIRTADAVGVHEVHAV-----WPGSRMRTMVSSAAGSNSWVQVKTHSNIADAVG 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T + + L++ 
Sbjct: 85  HL--------KGQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQQALDLADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I  P+  +  SLN+S A  L+++E       +     +E     ++ + L F
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRRESTLEYSEQQRLLF 188


>gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 260

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 13/153 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEA 80
           Q   N+G + R+   F    + L        + K   +S  A      + V     + +A
Sbjct: 119 QDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAV---RIPVIETGAMPQA 175

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           IA L        R +       A  ++  +   +      V ++ G E  GLT+E IA  
Sbjct: 176 IALL--------REKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAAC 227

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           N+ +  P+     SLN   A  +++W   E S+
Sbjct: 228 NSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260


>gi|313885338|ref|ZP_07819089.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619444|gb|EFR30882.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 175

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 27/166 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I L  P +  N G ++R       +   L L++P      +K    +        +V + 
Sbjct: 5   IALYQPLMPANTGNISRTCAA---SNAPLHLIHPLGFSTDDKMLKRA--GLDYWHNVEII 59

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----IIFGRE 128
              + +   A L ++           + +    + A  +       +N       +FG+E
Sbjct: 60  EHESFE---AFLDYV---------GQRPMYLISKFAPRIYTEADLARNEADEQFFLFGKE 107

Query: 129 RWGLTNE-EIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             GL  E  +      +  P+N     SLN+S  V ++++E +   
Sbjct: 108 TTGLPLEFMLEHKQDCLRIPMNDEHVRSLNLSNTVNIVLFEALRQQ 153


>gi|291618555|ref|YP_003521297.1| YfiF [Pantoea ananatis LMG 20103]
 gi|291153585|gb|ADD78169.1| YfiF [Pantoea ananatis LMG 20103]
 gi|327394935|dbj|BAK12357.1| tRNA/rRNA methyltransferase YfiF [Pantoea ananatis AJ13355]
          Length = 377

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 14/150 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAI 81
               N+G + R+  +F +  L LVN      S  A  ++   A+ V           +AI
Sbjct: 239 SNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV-----------QAI 286

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           +   F     A  +  +  V         L++ +   + V ++ G+ER GL++      +
Sbjct: 287 SGATFNEGLEAFRKAGYTIVTTSSHQGTSLSDAVLPAKMV-LVLGQEREGLSDSTFQQGD 345

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +S        SLN+S A  +++ E    
Sbjct: 346 MSLSIGGTGNVESLNVSVATGVLLAEWWRQ 375


>gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2143]
 gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2143]
          Length = 247

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 25/177 (14%)

Query: 7   QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           ++ +    P  ++IL       N+G   R      +    ++ P+D     +   R  + 
Sbjct: 88  EMLDGLDHPPLLLILDGVTDPHNLGACLRTADAAGVD--AVIAPKDSSAPLNATVRKVAC 145

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A  V+  ++V +NL   + D+     +I  T                 A     +    
Sbjct: 146 GAAEVVPYIQV-TNLARTMKDIQGRGIWITGTAG--------------EAEQSVYQANLT 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             V ++ G E  G+        + +I+ P+     SLN+S A  + ++E +   + +
Sbjct: 191 GPVALVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCLFEAVRQRVSA 247


>gi|309776934|ref|ZP_07671904.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915345|gb|EFP61115.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 169

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 66/166 (39%), Gaps = 13/166 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-N 76
           +L +P++ +N G + R     N T+L L+ P      E+    +      +D V+     
Sbjct: 5   VLYEPEIPQNTGNMMRTCMATN-TRLHLIKPLGFSLDEQHLKRAG-----MDYVKELDYT 58

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + E   D      T+    +N+  +    + A    +      ++  I G+E  G+  E 
Sbjct: 59  VYENWEDF-----TSQHPSDNYYYMTRYGKKAPSQFDFTTCKGDIYFILGKESTGIPKEL 113

Query: 137 IAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           ++   +  +  P+     SLN+S    ++++E +         NV+
Sbjct: 114 LSRQLDRCMRLPMVANARSLNLSNCAAIILYEALRQLDYPGLSNVE 159


>gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii
           B565]
          Length = 249

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+          +V PRD     +   R  +  A  V+  ++V +
Sbjct: 104 VLDGVTDPHNLGACLRSADAAG-AHAVIV-PRDKATGLTPIVRKVACGAAEVVPLIQVTN 161

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L+E      +I  T                 A     +      + ++ G E  G+
Sbjct: 162 LARTLRELQERGVWIVGTAG--------------EADHDLYQAKLTGPMALVMGAEGKGM 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++S P+     SLN+S A  + ++E +   
Sbjct: 208 RRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQR 247


>gi|288801847|ref|ZP_06407289.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
 gi|288335889|gb|EFC74322.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
          Length = 191

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 6   PQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            + + + K P+I++   V      N+G V R+   F +  + L       P+ +   ++ 
Sbjct: 15  EEFKEADKLPLIVVLDDVRSLH--NVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             +  +D  R F   ++AI +LH    F+Y+      +     L  +      +    + 
Sbjct: 73  GGEDSVDW-RYFERTEDAIEELHHQGVFVYSVEQVEGSTKLQELNTENPTNHQHPTPNTQ 131

Query: 119 QNV---GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             V    I+ G E  G+    + +S+  +  P      SLN+S    +++WE     ++ 
Sbjct: 132 HPVIHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIWEFARQLLIK 191


>gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           italicus Ab9]
 gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           italicus Ab9]
          Length = 249

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R+   F +  + +   R    +     +SA A   +   +V SN+
Sbjct: 102 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEYMKIAKV-SNI 160

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              I +L     +I  T                      E I     V ++ G E  G++
Sbjct: 161 NNTIRNLKERGLWIIGT--------------DVNGGKSFEEIDYDFPVALVIGNEGKGVS 206

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +   + ++  P+     SLN S A  +++++ 
Sbjct: 207 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 241


>gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
           'sapolanicus']
 gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
           'sapolanicus']
          Length = 246

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            IIL + +   N G + R  +      +   + R    +     ++A A   I  V+V S
Sbjct: 96  TIILDEIKDPHNFGAIIRTAYAAGADAVVYQDRRAVDITPVVLKAAAGAAEHIPLVKV-S 154

Query: 76  NLK---EAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           N+    +A+ D HF  + A  A  +++F              E  FSG +  ++ G E  
Sbjct: 155 NINYAIKALKDAHFWVVGADAAGEQSHF--------------EADFSG-STALVIGSEGS 199

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL        + ++  P+     SLN S A  ++++E    
Sbjct: 200 GLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIYEIFRQ 240


>gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 257

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 18/167 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
               G  +IL + Q   N+G + R+     +  L +  P    P S K   ++  A  ++
Sbjct: 106 PPRPGLRLILDEIQDPGNVGTLLRSAAAAGVG-LVICAPGTADPFSPKVARAAMGAHFIV 164

Query: 69  D-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +  + ++   +A      A +A      +               +   Q   +I G 
Sbjct: 165 PLRLLPWDDIATELAGYTVYAADSA----AQQPYYT-----------VDWRQPAALIIGN 209

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G++     L+++ I+ P+     SLN   A  ++++E +    +
Sbjct: 210 EAHGVSTAARTLAHSTITIPMAGPIESLNAGVAGSIILFEALRQQTI 256


>gi|71277929|ref|YP_271035.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71143669|gb|AAZ24142.1| RNA methyltransferase, TrmH family, group 2 [Colwellia
           psychrerythraea 34H]
          Length = 154

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  PQ+  N G + R   N    +L L+ P      +K    +        +++  +N
Sbjct: 4   VVLFQPQIPPNTGNIIRLCANSGF-RLHLIEPLGFDLDDKKLRRAGLDYHEFAAIQRHAN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +             +   K VLA           I       ++FG E  GL  EE
Sbjct: 63  FNAFLE------------KEQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLP-EE 109

Query: 137 IALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +       +  P+     S+N+S A  ++V++    
Sbjct: 110 V-RAQIPDENKLRIPMLKESRSMNLSNATAVIVYDAWRQ 147


>gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 253

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 23/177 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L + ++GP ++LV        N+G   R         L ++ P+D     +   R  + 
Sbjct: 88  ELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVAC 145

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  VI  V V +    L++      ++  T               EA + L ++  +G 
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGP 192

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + II G E  G+        + ++  P+     SLN+S A  + ++E +    V +
Sbjct: 193 TI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 248


>gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937]
 gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937]
          Length = 362

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +  L LVN      S  A  ++   A+ V         L +A+A 
Sbjct: 225 PHNLGGIMRSCAHFGVKGL-LVNDAAQLESGAAVRTAEGGAEHV--KAISADGLVDALAQ 281

Query: 84  LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  I  T++        V  P                  I+ G+E  GL++     
Sbjct: 282 FRAAGYTIVTTSSHKGTTLSKVSLP--------------AKTVIVLGQEGDGLSDSAWQQ 327

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  +S        SLNIS A  +++ E    
Sbjct: 328 GDVKVSIDGTGNVESLNISVATGILLAEWWRQ 359


>gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
           sp. WH 8109]
 gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
           sp. WH 8109]
          Length = 515

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 19/177 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++ L       N+G V R+        + +   R    +  A   +A A   +   R
Sbjct: 279 PPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVAR 338

Query: 73  VFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +   +L E + D  + +    A                 V    +     + ++ G E
Sbjct: 339 VVNLNRSL-EKLKDAGYRVVGLAA--------------EGDVTLTDVDLSGPMVLVTGSE 383

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             GL+       + ++  P+  + PSLN S A  L V+E    + +           
Sbjct: 384 DQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPP 440


>gi|81428093|ref|YP_395092.1| putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|78609734|emb|CAI54780.1| Putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 169

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5   IVLYEPLIPANTGNIARTCA--GTDTVLDLIEPLGFETDDKHLKRA--GLDYWDQVKINY 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL   +         T  +R +   +    + A    +   +  +   +FG+E  GL 
Sbjct: 61  HKNLDAFLE--------TVPDRKHLYLITKFAKQAYSDQDVTDTSVDHYFMFGKETTGLP 112

Query: 134 ------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 NE     +  +  P++    +LN+S    L+++E +   
Sbjct: 113 ETFMRENE-----DQCLRIPMSDHIRALNLSNCAALVIFEALRQQ 152


>gi|240169060|ref|ZP_04747719.1| putative tRNA/rRNA methylase [Mycobacterium kansasii ATCC 12478]
          Length = 154

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 19/163 (11%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
            V P +  N G   R        +L LV P     SE     +      + SV V ++L 
Sbjct: 6   FVSPCIAPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLT 64

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            A   L    ++A TA             +A    ++  +   +V ++FG E  GL    
Sbjct: 65  AAWDALLPARVFAFTA-------------QATTPFSDVSYRAGDV-LMFGPEPTGLDAAT 110

Query: 137 IALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +A ++    +  P+     SLN+S A  + V+E       S  
Sbjct: 111 LADAHITEQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHDYSGA 153


>gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
 gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
          Length = 282

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 13/160 (8%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDS 70
            KGPV++L       NIG + R+   F    L LV  R+      A + +++ A  V+  
Sbjct: 133 RKGPVLVLDQVTDPRNIGAILRSAAAFGAAAL-LVQDRNAPQESGAMAKAASGALDVVP- 190

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                     + +++   A  A    NF  V+        L+ + F+G+ V ++ G E  
Sbjct: 191 ---------ILREVNLSRALQALQAENFW-VVGLDAGGTRLDGKSFAGRRVALVLGAEGA 240

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           GL        + I S  +     SLN+S A  + ++E + 
Sbjct: 241 GLRRLTRETCDEIASVYMPGDMESLNVSNAAAVALYELVR 280


>gi|325285057|ref|YP_004260847.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320511|gb|ADY27976.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 219

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 12/140 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F +    L+  +   P +K  +    A   + + R ++   E I    
Sbjct: 44  HNTSAVIRSCDAFGVQTAHLIESKYSEPLDKNIAM--GAQQWVTTPR-YNTTTECID--- 97

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T R ++ +K +         L +       + + FG E+ GL+ E +  ++  + 
Sbjct: 98  -----TLR-KDGYKIIATSPHTDSYLLDDFKIDDKIALFFGTEKSGLSQEVLDKADGYVK 151

Query: 146 FPVNPLFPSLNISQAVLLMV 165
            P+     SLNIS +  +++
Sbjct: 152 IPMVGFSESLNISVSAAILL 171


>gi|322513937|ref|ZP_08067013.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
 gi|322120232|gb|EFX92187.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
          Length = 159

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 21/171 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P++ +N G + R   N    +L ++ P    W  +K R S        + V +  
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGF-RLHMIEPLGFEWDDKKLRRS---GLDYHEFVDIQK 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + N ++ +             R   K + A        +  +       ++FG E  G+ 
Sbjct: 60  YKNFEDFLE------------RAKPKRLFALTTKGEPNHSEVSYELGDFLMFGPESRGIP 107

Query: 134 NEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
              +     +  I  P+     S+N+S  V ++V+E             + 
Sbjct: 108 MAILDSLPMSQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQFGYQGSVPRQP 158


>gi|284008843|emb|CBA75632.1| methyltransferase [Arsenophonus nasoniae]
          Length = 167

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 11/160 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        +++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-QLHLIEPLGFTWDDKRLRRAGLDYHEFANIQRHHD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +  +    A       N    L  K      +     G    ++FG E  GL    
Sbjct: 63  YFAFLTAVALSKAHLKTPSGNRLFALTTKGTPSHSSVVYQPGDY--LMFGPETRGLPAYV 120

Query: 137 IALSNAI-----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   + +     I  P+     S+N+S +V ++V+E    
Sbjct: 121 L---DGLPTSQKIRIPMLADSRSMNLSNSVAVVVFEAWRQ 157


>gi|146302736|ref|YP_001197327.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146157154|gb|ABQ08008.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 220

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F + +L ++  R G   +K    +  A   +D +  F  +   I+   
Sbjct: 44  HNTSAVMRSCEVFGIQELNIIEQRFGKRIDKEI--ALGAQKWVD-INRFDTVDGCIS--- 97

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                + R++        P E    L +     +   + FG E+ GL+ E +  ++  + 
Sbjct: 98  -----SLRDKGYQIIATTPHEN-DCLIQDFDISKPSALFFGTEKDGLSPEILEKADGFLK 151

Query: 146 FPVNPLFPSLNISQAVLLM 164
            P+     SLNIS +  ++
Sbjct: 152 IPMVGFTESLNISVSAAII 170


>gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
           F6-596]
 gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
           F6-596]
          Length = 251

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A   ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDANGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + +I  P+     SLN S A  ++++E   
Sbjct: 208 RLVREKCDFLIHLPMRGKVTSLNASVAASILLYEVYR 244


>gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
 gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
          Length = 322

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 9   QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           Q++A+ P+I+ L       N+G +AR+   F    + + + R    +  A  +SA     
Sbjct: 166 QDAAEVPLIVALDSVTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGTLAH 225

Query: 68  I---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +    +  + + L+E      F+                  E+ + + +       + ++
Sbjct: 226 LTVARAANLTATLREYREAGLFVIGLDG-------------ESTVDIGDANLLDGPLVVV 272

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL+       + ++  P+N    SLN   A  + ++E   + 
Sbjct: 273 VGSEGKGLSRLVRESCDLVVRIPMNAAAESLNAGVAAGVALYEVARHR 320


>gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 289

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 17/172 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            Q+  +    V +L   +   N G V R         + L +      + KA  +S  + 
Sbjct: 118 EQILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSL 177

Query: 66  CVIDSVRVFSNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +        +++A+A      +  + A  A +R+    +           ++   G  
Sbjct: 178 FHLPVAIGVP-VEQAVAGLRGTGVRVLAADGAGDRDLDDEL-----------DKGTMGGP 225

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +FG E WGL  E  AL++A++  P++    SLN++ A  + ++      
Sbjct: 226 TAWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQ 277


>gi|239637864|ref|ZP_04678825.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
           L37603]
 gi|239596427|gb|EEQ78963.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
           L37603]
          Length = 156

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +       + V + 
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNVGIIFGRERWG 131
               E I    F  +T     +    +L   +         +   +  N   IFGRE  G
Sbjct: 59  -TYHENIE--SFFEST-----DGEYYLLT--KFGKQTYSDFDFSDTQNNHYFIFGRETTG 108

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +       +  +  P++    SLN+S    L+++E +   
Sbjct: 109 LPDWVKDKYQDTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150


>gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
 gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
          Length = 254

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 14/163 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73
           ++IL       NIG + R    FN+  L L  P +  PSE A    +++ A  ++  + V
Sbjct: 104 IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +     +  + ++       +  +            ++E     +   IIFG E  G+ 
Sbjct: 162 TN----IVKTMQYL------KKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVR 211

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  + ++  P++    SLN+S A  + ++     +  S+
Sbjct: 212 RLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 254


>gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila simulans]
          Length = 236

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 14/163 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73
           ++IL       NIG + R    FN+  L L  P +  PSE A    +++ A  ++  + V
Sbjct: 86  IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 143

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +     +  + ++       +  +            ++E     +   IIFG E  G+ 
Sbjct: 144 TN----IVKTMQYL------KKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVR 193

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  + ++  P++    SLN+S A  + ++     +  S+
Sbjct: 194 RLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 236


>gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila ananassae]
          Length = 236

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 14/163 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73
           ++IL       NIG + R    FN+  L L  P +  PSE A    +++ A  ++  + V
Sbjct: 86  IVILDQVTDTHNIGSILRTSACFNVDALVL--PHNHSPSENASIAKAASGALDIVPLIYV 143

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +     +  + ++       +  +            ++E     +   IIFG E  G+ 
Sbjct: 144 TN----IVKTMQYL------KKVGYWCYGFDCNTKENIDEIKSFEKKRVIIFGSEEKGVR 193

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  + ++  P++    SLN+S A  + ++     +  S+
Sbjct: 194 RLVKENCDYLLKIPMSNAINSLNVSNAAAIGLYSIYIKTNASA 236


>gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
 gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
          Length = 263

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 15/163 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L   Q   N G + R+     + Q+   N      S K   +   A  ++    +FS
Sbjct: 114 CVVLERVQDPGNAGTILRSAAAAGVKQIVCSNDSVDIWSPKVLRAGMGAHFLLS---IFS 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTN 134
            ++            +A        + A       +    +   Q+   +FG E  G++ 
Sbjct: 171 RVE-----------LSAWMEKYQHPIWATALGGRNIGLYEMNLSQSCAWVFGNEGSGVSE 219

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                + A +  P+     SLN++ A  + ++E M   I +  
Sbjct: 220 RIKEKAEACVKIPMLGQTESLNVAMAATVCLFEQMRQRIHAQA 262


>gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus
           flavefaciens FD-1]
          Length = 254

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 21/173 (12%)

Query: 9   QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +N    P II+  + +   N+G + R         + +   R    +     +SA A   
Sbjct: 98  RNKGTKPFIIICDEIEDPHNLGAIIRTAETSGADGIIIPKRRSASLNATVFKTSAGAANY 157

Query: 68  IDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   RV SNL   I     +  +IY T A      ++                   +  +
Sbjct: 158 VPVARV-SNLASCIDMLKENGVWIYGTDASGTEYTQTDFT---------------GSCAL 201

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + G E +G++       + +I  P+     SLN S A  + ++E +     +S
Sbjct: 202 VIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAAGIFMYEILRQRSNNS 254


>gi|225164081|ref|ZP_03726364.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224801322|gb|EEG19635.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 252

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 27/180 (15%)

Query: 2   TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW---PSEK 56
            P   +++  AK   P+++L       N+G +AR    F +  + +  P   +   P E 
Sbjct: 83  APLPREVRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAHIII--PAHAFAALPGES 140

Query: 57  ARSSSANA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110
           A   +           V    R  + L EA      + A T R                +
Sbjct: 141 AHRIAEGGLEHLTLWRVPTLARFCAELHEA--GYEVVGAAT-RGGALT-----------L 186

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  G    ++ G E  GL  E       +++ P +    SLN+S A  ++++  ++
Sbjct: 187 PALPGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFALLK 246


>gi|123440446|ref|YP_001004440.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087407|emb|CAL10188.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 230

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 20/175 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  + R      + Q+        WP+    +    +A ++  +  V+  S++ +AI
Sbjct: 30  PHNVSAIIRTADAVGIHQIH-----AIWPTPAMYTRLSSAAGSNSWV-QVKTHSHITDAI 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                   T  +++          + A+   E I   +   I+ G+E+ G++ E +A+++
Sbjct: 84  --------THLKSQGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISKEALAMAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
             I  P+  +  SLN+S A  L+++E       +      +     ++ E    L
Sbjct: 135 KDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYQRTQSVL--SEDEQQRLL 187


>gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 245

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 24/174 (13%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           QL  S K P +++L       N+G   R      + Q  +V P+D     +  AR  +  
Sbjct: 88  QLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGV-QAVIV-PKDKSASLTPVARKVACG 145

Query: 64  ADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           A   +  VRV +NL   + +L     ++  T               EA   L +  F G 
Sbjct: 146 AAETVPFVRV-TNLARFLRELKDQGVWLIGTAG-------------EADATLYQADFKG- 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            V ++ G E  G+        + +I+ P+     SLN+S A  + ++E +   +
Sbjct: 191 PVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEALRQRL 244


>gi|330684735|gb|EGG96430.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU121]
          Length = 156

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++  N G +AR     N   T L L+ P      +K    +       + V + 
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTN---THLHLIKPLGFSTDDKMLKRA--GLDYWEHVNI- 58

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGL 132
               E   D+   + +T     N +  L  K      ++  FS    N   IFGRE  GL
Sbjct: 59  -TYHE---DIESFFEST-----NGEYYLLTKFGKQTYSDFDFSDTNNNHYFIFGRETTGL 109

Query: 133 TNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +       +  +  P++    SLN+S    L+++E +   
Sbjct: 110 PDWVKDKYQDTALRIPMSDKIRSLNLSNTAALLIYEALRQQ 150


>gi|49475913|ref|YP_033954.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238721|emb|CAF27975.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 158

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R    F L  + ++ P     S++    +      ++      +
Sbjct: 5   IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRA--GMDYLEYA----S 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  I   HFI+      +   + +L     A     +I   +N  ++FGRE  G+ N  
Sbjct: 58  LERHIDWPHFIH----TMKQFNRRLLLLSTKAETCYTQICYQENDVLLFGRESAGVPNYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               N  +  P+ P   SLN++ +V +   E +  
Sbjct: 114 YEAVNETLKIPMQPYARSLNLAMSVAITTGEALRQ 148


>gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
           harbinense YUAN-3]
 gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
           harbinense YUAN-3]
          Length = 258

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 23/171 (13%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVID 69
           + P +++  +     N+G + R         + +  P+ G    +     +++ A   + 
Sbjct: 102 EPPFLVICDEINDPHNLGAIIRTAECCGAHGVII--PKRGAVGLTAAVDKAASGALEYMP 159

Query: 70  SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             RV    + ++E   +  ++Y T                      E  FSG    +I G
Sbjct: 160 VARVSNLAATVEELKKEGVWVYGT--------------DMDGQPFYETDFSGG-AAVIIG 204

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E  G++       + ++S P+     SLN S A  ++++E  +  I +  
Sbjct: 205 SEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGIVLYEAAKTRIRTGG 255


>gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi]
          Length = 366

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +  L LVN      S  A  ++   A+ V         L +A+A 
Sbjct: 229 PHNLGGIMRSCAHFGVKGL-LVNDAAQLESGAAVRTAEGGAEHV--KAISADGLVDALAQ 285

Query: 84  LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  I  T++        V  P                  I+ G+E  GL++     
Sbjct: 286 FRAAGYTIVTTSSHKGTTLSKVSLP--------------AKTVIVLGQEGDGLSDSAWQQ 331

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  +S        SLNIS A  +++ E    
Sbjct: 332 GDVKVSIDGTGNVESLNISVATGILLAEWWRQ 363


>gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942]
          Length = 258

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 20  VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           V+  Q   N+G + R         L L          K   +SA     +    + ++L 
Sbjct: 114 VETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIA-IATDLG 172

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           + +         + + +        P+    +    +   +   ++ G E  GL+ +  A
Sbjct: 173 QTLR--------SWQQQGYQIVSTLPRATTTLWQADLT--RPTVLLLGNEGAGLSPDLAA 222

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++++ ++ P      SLN++ A  L+++E     
Sbjct: 223 IADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 256


>gi|332764147|gb|EGJ94384.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
          Length = 206

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++  V     WP  + R+ ++ A        V+    + +A+A
Sbjct: 7   PHNVSAIIRTADAVGVHEVHAV-----WPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVA 61

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        + +          + A+   E I   +   I+ G+E+ G+T E +AL++ 
Sbjct: 62  HL--------KGQGMQILATHLSDNAVDFRE-IDYTRPTCILMGQEKTGITQEALALADQ 112

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            I   +  +  SLN+S A  L+++E       +     +    P  + + L F
Sbjct: 113 DIIILMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEAEQQRLLF 165


>gi|330718618|ref|ZP_08313218.1| rRNA methylase (SpoU class) [Leuconostoc fallax KCTC 3537]
          Length = 170

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P      +K    +       + V++  
Sbjct: 5   IVLFEPVMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRA--GLDYWEHVQLVK 60

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L + +         T +  ++   V           +   +  +   +FG+E  GL 
Sbjct: 61  HPSLPDFLD--------TLKPTDHLYLVSKFANQDYSQPDYQATDGDHYFLFGKETTGLP 112

Query: 134 NEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             E+ +       I  P +     SLN+S  V ++++E +   
Sbjct: 113 --EVFMRQNPEKAIRIPQDDTHIRSLNLSNTVAIVLYEALRQQ 153


>gi|78356571|ref|YP_388020.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218976|gb|ABB38325.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 152

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++  N G VAR       T L L+ P      +K    +         V +   
Sbjct: 3   IVLFQPEIPPNTGNVARLCAAT-RTSLHLIEPLGFSVDDKHVRRA--GLDYWPHVDLTVW 59

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              ++ ++E  + +  +  T+AR     +                   +N  ++FG E  
Sbjct: 60  PGWYAFMREVGSRVRLVM-TSARGGTAVQDFRF--------------NKNDALVFGPESR 104

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL    +  S  ++  P+     SLN+S A  +++++ +  S   + +
Sbjct: 105 GLPAHMLDGSGHVVRIPIWGEVRSLNMSTAAGIVLYQALAASGELAGR 152


>gi|182412678|ref|YP_001817744.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177839892|gb|ACB74144.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 296

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 64/175 (36%), Gaps = 28/175 (16%)

Query: 5   APQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           AP LQ   + P I++V+  +   N+G + R+        + + +P     +     +S  
Sbjct: 141 APDLQ---RAPFILVVEAIEKPGNLGTILRSADAAGCDAVIVCDPVTDIFNPNVVRASTG 197

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTA------RNRNNFKSVLAPKEAAIVLNERIFS 117
                            +  +  + A +A      R +        P  AA  L      
Sbjct: 198 ----------------VLFSVPLVVAESAPVLAWLRAQGVRTIATTP--AAEKLYTDADL 239

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              + I+ G E++GL+   +   +  +  P+     SLN++ A ++ ++E +   
Sbjct: 240 RGPLAIVMGSEQYGLSEFWLKNCDLPVRIPMAGQADSLNVAMATIITLFEAVRQR 294


>gi|309812910|ref|ZP_07706638.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308432982|gb|EFP56886.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 270

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 19/177 (10%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P++ +    P++ LV    +   N+G + R      +  +   +P   W +      S
Sbjct: 109 AHPRMLDLPANPLL-LVAEGVEKPGNLGAMLRTADAVGVDGVIAADPVTDWGNPNVVRGS 167

Query: 62  ANA--DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                   + +      L+                R+N   ++A      V++  I    
Sbjct: 168 KGTVFSVPVAAAPTSETLE--------------WLRDNDIPLIATTPDTDVMHTDIDLSG 213

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            V +  G E++GLT+E +  + + +  P+     SLN++ +  ++++E M    V  
Sbjct: 214 PVAVAVGTEKYGLTDEMLGAATSRVRIPMVGQVNSLNVATSAAIVLYEAMRQRGVRG 270


>gi|223935595|ref|ZP_03627511.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
 gi|223895603|gb|EEF62048.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
          Length = 155

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 26/169 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I++V+P++  N G VAR       T+L L+ P      +K    +         V     
Sbjct: 3   IVMVEPEIPPNTGNVARLCAATK-TRLHLIEPLGFKLDDKQLKRA--GMDYWQQVEWRQW 59

Query: 74  --FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +    E + AD    +  +   R   +    P++                ++FGRE  
Sbjct: 60  ANWKTFCEQLPADARLWFVESDGPRLYTEVQYLPEDY---------------LVFGRETA 104

Query: 131 GLTNEEI-ALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSE 177
           GL  + +       +  P+ N    SLN+S    ++++E +     + E
Sbjct: 105 GLPKQLLKENPERWLRLPMFNAESRSLNLSNCAAIVLFEALRQQGFAGE 153


>gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
 gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
          Length = 542

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 19/177 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++ L       N+G V R+        + +   R    +  A   +A A   +   R
Sbjct: 312 PPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVAR 371

Query: 73  VFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +   +L E + D  + +    A                 V    +     + ++ G E
Sbjct: 372 VVNLNRSL-EKLKDAGYRVVGLAA--------------EGDVTLTDVDLSGPMVLVTGSE 416

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             GL+       + ++  P+  + PSLN S A  L V+E    + +           
Sbjct: 417 DQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARRNWMKDIHGQAPSPP 473


>gi|269925433|ref|YP_003322056.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789093|gb|ACZ41234.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 212

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 80/202 (39%), Gaps = 15/202 (7%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+       ++L +     N+  V R+     +  + LV   + +P   +++ S +A   
Sbjct: 19  LKRRQPDLTVVLENVHDPHNVSAVLRSCDAVGVLAVHLVYTIEEFPDL-SKNVSGSALKW 77

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKS---VLAPKEAAIVLNERIFSGQNVGII 124
           ++ ++        I D +     T R++        +  P+         +   +   ++
Sbjct: 78  LEIIKHKD-----IQDCYD----TLRSQGMTIYTTYLADPQR--SHDLYSLDLTKPTALV 126

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           FG E+ G++ E   L++     P+  +  SLNIS A  + ++E +     +   +  + +
Sbjct: 127 FGNEQRGVSEEASRLADGNFVIPMMGMVQSLNISVACAVTLYEALRQRRAAGHYDHPKLS 186

Query: 185 TPATKGELLSFLDYLEISLEER 206
                  L ++L   + S+EE 
Sbjct: 187 REEISTRLHNWLQREKRSIEEL 208


>gi|167911489|ref|ZP_02498580.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 112]
          Length = 184

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L     G  ++L   Q   N+G + R+     + +     P   +  S K   S+  
Sbjct: 26  APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 84

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  +  
Sbjct: 85  AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 130

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176
           +FG E  G++      +   ++ P      SLN++ A  + ++E C +   + +
Sbjct: 131 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 184


>gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
           artemidis F0399]
 gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
           artemidis F0399]
          Length = 277

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 68/177 (38%), Gaps = 18/177 (10%)

Query: 2   TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           TP    ++  +  P    ++L   Q   N+G + R       + + L+       + K  
Sbjct: 111 TPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVV 170

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            ++      ++  +     K+ +          A+ R+     L       +  E I + 
Sbjct: 171 RAAMGGLFYMNVAQGVEE-KDFLQ--------WAQERSLN---LYAAACDDMAQEHIHTD 218

Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             +   ++FG E  G+++  +A +   +  P+     SLN+S A  ++++EC+   I
Sbjct: 219 FTKTTAVVFGNEANGVSSAILARARR-VYVPMFGPVESLNVSAAAAVILYECVRQRI 274


>gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
 gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
          Length = 259

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 21/169 (12%)

Query: 9   QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +  ++ P II+  + +   N+G + R         + +   R    +     +SA A   
Sbjct: 104 REKSEDPFIIICDEIEDPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASW 163

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   RV  NL  A+ DL     +IY T    +N              L         +G+
Sbjct: 164 LPVARV-PNLAAAVDDLKKQGIWIYGTDGAGQNYS---------GADLR------GPIGL 207

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E +G+        + ++S P+     SLN S A  + ++E +   
Sbjct: 208 VVGSEGFGMGRLMKEKCDMLLSLPMAGKITSLNASVAAGIFMYEIVRQR 256


>gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
 gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
          Length = 289

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L       N+G V R+   F  + + L +      +      ++ A  V+  VRV  N
Sbjct: 134 VVLDQVTDPHNVGAVLRSAAAFGASAVVLQDRHGPPVTGVLAKIASGALDVVPLVRVV-N 192

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+ DL            N        E   V   R+  G    I+ G E  GL    
Sbjct: 193 LARALRDLQ----------ENGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRLT 242

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
               +A+   P  P   SLN+S A  + +++         +  +
Sbjct: 243 RETCDALARLPTCPPIGSLNVSAAAAVALYQARLARTGRDDLQL 286


>gi|302383789|ref|YP_003819612.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194417|gb|ADL01989.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 167

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-- 76
           L  P + +N+G   R    F + +L ++ P      ++A   +A     +  +    +  
Sbjct: 26  LFQPAIPQNVGACIRLSACFGV-ELHIIEPTGFQFDDRAMKRAALDYGPLAHMTRHPDWA 84

Query: 77  -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             + A      I  TT         V  P +                ++FG E  G    
Sbjct: 85  AFQAARGSGRLILFTTKGAAPLTDFVFQPDD---------------TLLFGSETAGAPEH 129

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             A ++A +  P+ P   SLN+S +  + ++E +  +
Sbjct: 130 VHAAADARVFIPIRPDARSLNLSVSAGIGLFEALRQT 166


>gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
          Length = 260

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEA 80
           Q   N+G + R+   F    + L        + K   +S  A      + V     + +A
Sbjct: 119 QDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAV---RIPVIETGAMPQA 175

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I        T  R +       A  ++  +   +      V ++ G E  GLT+E IA  
Sbjct: 176 I--------TLLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAAC 227

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           N+ +  P+     SLN   A  +++W   E S+
Sbjct: 228 NSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260


>gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
 gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
          Length = 248

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 17/165 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L + +   N+G + R+     +  + +   R    +     ++A A   I  VRV + 
Sbjct: 98  ILLDELEDPHNLGSILRSADATGVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTNM 157

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + E      +I  T              +  A     ++     +GI+ G E  G++
Sbjct: 158 SNTIDELKERNVWIVGT--------------EAEADQDYRQLDGSLPIGIVIGNEGKGMS 203

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                  +  +  P+     SLN S A  L+++E         ++
Sbjct: 204 RLVRKKCDWTVGLPMVGQVSSLNASVACGLLLYEVYRKRHPLGDQ 248


>gi|226357312|ref|YP_002787052.1| tRNA guanosine-2-O-methyltransferase [Deinococcus deserti VCD115]
 gi|226319302|gb|ACO47298.1| putative tRNA guanosine-2-O-methyltransferase (transfer
           ribonucleate guanosine 2-methyltransferase) [Deinococcus
           deserti VCD115]
          Length = 222

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 21/196 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSE------KARSSSANADCVIDSVRVFSNLK 78
             N+  + R      + +   V P+ G  +       +A S SA+    + S     +  
Sbjct: 31  PHNLSAIIRTCDAVGVLEAHAVPPKGGPLASFSGHTYEATSGSAHKWVPVHSHTDAVSAV 90

Query: 79  EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            A+    F + AT    R+       P              +   ++ G E+WG+++E  
Sbjct: 91  HALQGQGFQVLATHLSQRSVD--YREPDYT-----------RPTCVLLGAEKWGVSDEAA 137

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA-TKGELLSFL 196
             ++  I  P+  +  SLN+S A   +++E     + +      + +  A  +       
Sbjct: 138 DAADHNIVIPMFGMVQSLNVSVAAATILFEAQRQRLAAGMYAAPQLSPEALDRLAFEWAY 197

Query: 197 DYLEISLEERGYFRPV 212
             L  + +ERG   P 
Sbjct: 198 PDLVSTYQERGEGYPA 213


>gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
 gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
          Length = 247

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   G  +ILV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T                 A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG--------------DAEKSVYDTELD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +    V  
Sbjct: 190 GPVALVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247


>gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
 gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
          Length = 236

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 24/153 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
            +N+G +AR++  F    L L  P+ G    +E A  +SA A   +  V     L+E + 
Sbjct: 100 PQNLGAIARSVELFGGVGLLL--PQRGSAPINEVAVKASAGALLHL-KVVRVDFLEEGLL 156

Query: 82  ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   +YA     R+   S L                + +  I G E  G+  E + 
Sbjct: 157 AFKESGGNVYALETGGRDIRDSQL---------------KRPLAFILGSEGKGIDAELVE 201

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L++  ++ P     PSLN+S A  +  WE    
Sbjct: 202 LADLTVTIPTVGKLPSLNVSVAAGIAAWEIFRR 234


>gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
           AT1b]
 gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
           AT1b]
          Length = 250

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 17/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L + +   N+G + R         + +   R    ++    +S  A   I   RV + 
Sbjct: 102 ILLDELEDPHNLGSILRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNL 161

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L+E      ++  T A+   +++              R+     + ++ G E  G++
Sbjct: 162 TRTLEELKEKGLWVVGTDAKESQDYR--------------RLDGNMPLVVVIGSEGKGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + ++  P+     SLN S A  L+++E   + 
Sbjct: 208 RLVRESCDFLVHLPMVGHVTSLNASVAAALLLYEVHRSR 246


>gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 289

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 25/174 (14%)

Query: 6   PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P    S + P +++V+  +   N+G + R+     +  L + +P     +     +S   
Sbjct: 126 PAADRSERAPFLLVVEAIEKPGNLGTILRSADAAGVDALIVCDPVTDLFNPNVVRASTG- 184

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTA------RNRNNFKSVLAPKEAAIVLNERIFSG 118
                           +  +  I A +       R R        P  +A  L+      
Sbjct: 185 ---------------VLFSVPVIVAGSGEVREWLRERGIRSVATTP--SATTLHTDSDLR 227

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + I+ G E++GL++  +A ++A +  P+     SLN++ A ++ ++E +   
Sbjct: 228 GPLAIVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLFEAVRQR 281


>gi|124025726|ref|YP_001014842.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. NATL1A]
 gi|123960794|gb|ABM75577.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. NATL1A]
          Length = 166

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 29/168 (17%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +   P + L +P++ +N G + R    FN++ L ++ P      +K    +         
Sbjct: 5   NRTRPRVSLFEPRIPQNTGTIGRTCLAFNMS-LDIIKPTGFSFEDKYLKRA--GLDYWPH 61

Query: 71  VRV--FSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V V  + +  +         I A T ++ N              ++  I+   ++ ++FG
Sbjct: 62  VDVHLYESFDQYKNSFKNSRIIAFTKKSNNL-------------ISNIIYKDTDI-LLFG 107

Query: 127 RERWGLTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
           RE  GL    I     +   P+             SLN+S A  ++ +
Sbjct: 108 REDTGLPESIINKCEIVAGIPMPGGENQLKTGGVRSLNLSVASGIVCY 155


>gi|114776575|ref|ZP_01451620.1| RNA methyltransferase, TrmH family, group 2, putative
           [Mariprofundus ferrooxydans PV-1]
 gi|114553405|gb|EAU55803.1| RNA methyltransferase, TrmH family, group 2, putative
           [Mariprofundus ferrooxydans PV-1]
          Length = 155

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 25/167 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+LV+P++  N G +AR         L LV+P      +++   +           V   
Sbjct: 7   IVLVEPEIPPNTGNIARLCGCTGAA-LHLVHPLGFSVDDRSLKRA--GLDYWQYLDVTHH 63

Query: 75  SN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L+ ++      Y  +++   +F  V                     ++FG E  G
Sbjct: 64  DSWQQLRSSLDGNRNWYGMSSKASTSFWDVTY--------------SHGDVLVFGPETRG 109

Query: 132 LTNEEIALSNAIISFPVNPLFP--SLNISQAVLLMVWECMENSIVSS 176
           L+   +A    + + P+    P  SLN++    + ++E +       
Sbjct: 110 LSAAILAEIQPL-TVPMRADAPVRSLNLATVCGITLFEALRQLKADR 155


>gi|121607435|ref|YP_995242.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121552075|gb|ABM56224.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 168

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 23/177 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P++  N G V R   N   T L L+ P      ++    +       +  RV   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCT-LHLIEPLGFSMEDRRMRRA--GLDYHEYARVL-- 58

Query: 77  LKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                   H  +A    TAR   +    L  +    V       G     +FG E  GL 
Sbjct: 59  -------CHADWAAFLRTARPDASRMFALTTQSLQWVHATCFRPGDW--FVFGAETRGLA 109

Query: 134 NEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
                 ++      +  P+     SLN+S AV + V+E    +  +          P
Sbjct: 110 AA--LRASFAPAQCLRLPMIEGQRSLNLSNAVAVTVFEAWRQNGFAMPSGQSAVAMP 164


>gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 277

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 68/177 (38%), Gaps = 18/177 (10%)

Query: 2   TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           TP    ++  +  P    ++L   Q   N+G + R       + + L+       + K  
Sbjct: 111 TPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVV 170

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            ++      ++  +     K+ +          A+ R+     L       +  E I + 
Sbjct: 171 RAAMGGLFYMNVAQGVEE-KDFLQ--------WAQERSLN---LYAAACDDMAQEHIHTD 218

Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             +   ++FG E  G+++  +A +   +  P+     SLN+S A  ++++EC+   I
Sbjct: 219 FTKTTAVVFGNEANGVSSAILARARR-VYVPMFGPVESLNVSAAAAVILYECVRQRI 274


>gi|170026386|ref|YP_001722891.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186893379|ref|YP_001870491.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|294502145|ref|YP_003566207.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
 gi|169752920|gb|ACA70438.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186696405|gb|ACC87034.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           PB1/+]
 gi|262360224|gb|ACY56945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D106004]
 gi|262364170|gb|ACY60727.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D182038]
 gi|294352604|gb|ADE62945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
          Length = 219

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WP+ +  +   +A        V+   ++ +AIA
Sbjct: 19  PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSAAAGSNSWVQVKTHPHIADAIA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        ++++         + A+   E I   +   I+ G+E+ G++ E +AL++ 
Sbjct: 74  YL--------KSQDMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISPEALALADQ 124

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++    +  +  A   +     +
Sbjct: 125 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYKRTHSVLAESEQQRLLFE 178


>gi|296128722|ref|YP_003635972.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena
           DSM 20109]
 gi|296020537|gb|ADG73773.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena
           DSM 20109]
          Length = 264

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 15/167 (8%)

Query: 2   TPYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           TP    L +     G V++L   ++  N+G   R  +      + LV+     P ++   
Sbjct: 100 TPRPTSLADLAGRPGDVVVLDGVRIVGNVGAAVRTAYALGAAGVVLVDSDLAHPLDRRVV 159

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSG 118
            ++    V     V +  +EA          TA  R     ++A + A  +   +    G
Sbjct: 160 RASRG-YVFSLPVVLATREEA----------TAALRELDVPLVAFEAAGELGTGDLAALG 208

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + + ++FG E+ G  + E+      +S P+     SLN+S AV + +
Sbjct: 209 ERLALVFGSEKRG-ASAELTAGARTVSIPMRTAADSLNVSVAVGIAL 254


>gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
          Length = 338

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R+   F    + L   R    +      +A A   +   RV +NL +AI 
Sbjct: 192 EDPHNLGALIRSAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARV-TNLNQAIE 250

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     R +     V+  +E A      +     + ++ G E  G++       + 
Sbjct: 251 ----------RLKEAGYQVVGTQEKASQALYELKLDGPLVVVVGSEGKGISLLTQRHCDH 300

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++S P+     SLN S A  +M++E M     + 
Sbjct: 301 MVSIPLAGKTTSLNASVAGGIMLYEVMRQRRANQ 334


>gi|290477269|ref|YP_003470190.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289176623|emb|CBJ83432.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 167

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 9/159 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        +++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62

Query: 77  LKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +    L  + + +      F   L  K      N     G    ++FG E  GL  
Sbjct: 63  FHAFLVSEGLSPVNSQSPSGARLF--ALTTKGTPAHSNVSYQDGDY--LMFGPETRGLPA 118

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +        I  P+     S+N+S +V ++V+E    
Sbjct: 119 YVLDNMPTEQKIRIPMLSDSRSMNLSNSVAVVVFEAWRQ 157


>gi|291456412|ref|ZP_06595802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Bifidobacterium breve DSM 20213]
 gi|291381689|gb|EFE89207.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Bifidobacterium breve DSM 20213]
          Length = 292

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 16/148 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFSNLKEAIAD 83
             N G V RA        +  V+      + K   S+A +   +       +   +  +D
Sbjct: 142 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVFTMRTNEFFDWTSD 201

Query: 84  LHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            H       +Y T  R          P+    VL ++     +  ++FG E  GL  E +
Sbjct: 202 HHVDVWAADVYGTEKRK---------PESLPAVLADKAAVSMSQAVLFGNEARGLEPEIL 252

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMV 165
                I+S P+     SLN+  +  +M+
Sbjct: 253 ERCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured
           Desulfobacterium sp.]
          Length = 270

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 20/156 (12%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSN 76
           VDPQ   N+G +AR      ++ + +   R   P+     +SA A   I   +V    S+
Sbjct: 120 VDPQ---NLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSS 176

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +KE             ++R  +   +       V +  +     + ++ G E  G+    
Sbjct: 177 IKE------------MKDRGIWVVGMDAMADMPVFSCDLK--GPIALVIGSEGKGIRQLV 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            A  + ++S P      SLN S A  + ++E     
Sbjct: 223 KANCDFLVSIPQKGEVSSLNASAAGAVAMYEVFRQR 258


>gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
           ATCC 21756]
 gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
           ATCC 21756]
          Length = 276

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 11/171 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L  S  G +++L      +NIG + R+   F    + L +      S     ++  A  
Sbjct: 117 ELAASNDGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVD 176

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +   RV  NL  A+ +L           +     +A    A    + +  G    ++ G
Sbjct: 177 KVPYARVV-NLSRALEELA----------DLGWRAVALAGEAEQTLDEVLDGAPTVLVLG 225

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E  G+        + +   P+   F SLN+S A  + ++E  +    ++ 
Sbjct: 226 SEGEGVRRLVAEHCDVLGKIPMPGGFESLNVSAAAAIALYEASKPRGKATA 276


>gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
          Length = 259

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKE 79
           Q   N+G + R+   F    + L +      + K   +S  A     VI++ ++     E
Sbjct: 118 QDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRIPVIEAGKM----PE 173

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           AIA L        R +       A  ++  +          V ++ G E  GLT+E IA 
Sbjct: 174 AIALL--------REKGITCLAAALYQSQPLSAAASSYPDGVCVVIGSEGQGLTDETIAA 225

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
               +  P+     SLN   A  +++W   E S+
Sbjct: 226 CTGTVRIPMTDRVESLNAGIAGSILLWHFREESL 259


>gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
           lithotrophicus ES-1]
          Length = 247

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 23/177 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSA 62
            + ++   P ++LV    Q   N+G   R+   F +    ++ P+D      A     + 
Sbjct: 87  DVLDTLTEPALLLVLDGVQDPHNLGACLRSADAFGVH--AVIAPKDRAVGINATVEKVAC 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E      ++         N   V                  
Sbjct: 145 GAAQTVPYITVTNLARTLRELQERDIWVIGMDGEAETNLYDV--------------QHQG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            V  + G E  GL        + ++  P+     SLN+S +  + ++E     +V  
Sbjct: 191 AVAWVLGAEGEGLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLYEARRQRVVKP 247


>gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 91]
          Length = 262

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 17/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L     G  ++L   Q   N+G + R+     + +     P   +  S K   S+  
Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R +    L     A  + +   +G  +  
Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLSIPVALTDSHGARAIYDCDLAG-PLAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176
           +FG E  G++      +   ++ P      SLN++ A  + ++E C +   + +
Sbjct: 209 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 262


>gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 362

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 22/172 (12%)

Query: 9   QNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +++++ PV+++ +      N+G + R         + +   R    +   R  +A A   
Sbjct: 192 KSASEQPVLVVAEGLNDPHNLGAIIRTAEALGSQGMVIPQRRAVGITATVRKVAAGA--- 248

Query: 68  IDS---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +++    RV  NL  A+ +L     +IY T A+      +V    + A          + 
Sbjct: 249 LENFPVARVV-NLSRALEELKAAGFWIYGTAAKEGKAIHTVQFTGKLA----------RP 297

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V ++ G E  GL+       + ++S P+    PSLN+S A  + ++E     
Sbjct: 298 VVLVVGSEGDGLSLLIQRCCDELVSIPLRGNTPSLNVSVATGMALYEIYRQR 349


>gi|260171370|ref|ZP_05757782.1| putative SpoU-like rRNA methylase [Bacteroides sp. D2]
 gi|315919681|ref|ZP_07915921.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693556|gb|EFS30391.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 280

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 20/184 (10%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++   A+  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSVEEVCRKARRIVVIEGVVD---ATNIGTIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           S  +  +I    +  +  E   +       A T ++ +    +L              + 
Sbjct: 167 SMGSVFLIPWTWLDGSPYELRKLGFRTVAMALTEKSISIDNPIL-------------ATE 213

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + I+ G E  GL NE I  ++ ++  P+     SLN++ A  +  W+    +      
Sbjct: 214 PKLAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQNDAILPP 273

Query: 179 NVKE 182
              +
Sbjct: 274 LPDD 277


>gi|119947098|ref|YP_944778.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37]
 gi|119865702|gb|ABM05179.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37]
          Length = 234

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 74/181 (40%), Gaps = 17/181 (9%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           M+P        + N  +  + + ++      N+  + R      ++ +      +   ++
Sbjct: 1   MSPERLARITNMLNYRQPDLTVFLEQVHKAHNLAAIVRTADAVGVSDVH--ATWENKTTQ 58

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            + +++  +   + ++     L++A+           R +          ++AI   E +
Sbjct: 59  ISGNTATGSQNWV-NLHSHETLEDAVK--------ALRAQGMQIIATNLSDSAIDFRE-V 108

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +   I+ G+E+ G++ E +AL++  +  P+  +  SLN+S A  L+++E      ++
Sbjct: 109 DYTKPTAILMGQEKHGISPEALALADQDVIIPMVGMCQSLNVSVASALILYEAQRQRELA 168

Query: 176 S 176
            
Sbjct: 169 G 169


>gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 250

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 23/178 (12%)

Query: 6   PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61
            +L + ++GP ++LV        N+G   R         L ++ P+D     +   R  +
Sbjct: 87  EELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVA 144

Query: 62  ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A  VI  V V +    L++      ++  T               EA + L ++  +G
Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTG 191

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             + II G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 192 PTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKR 248


>gi|304398699|ref|ZP_07380571.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
 gi|304353910|gb|EFM18285.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
          Length = 394

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 14/150 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAI 81
               N+G + R+  +F +  L LVN      S  A  ++   A+ V           +AI
Sbjct: 256 SNPHNLGAIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV-----------QAI 303

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           +   F     A  +  +  V         L +     + + ++ G+ER GL++      +
Sbjct: 304 SGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAKLP-EKMVLVLGQEREGLSDTAFKQGD 362

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +S        SLN+S A  +++ E    
Sbjct: 363 MSLSIGGTGNVESLNVSVATGVLLAEWWRQ 392


>gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 270

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 22/151 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEA 80
           +   N+G + R+     +  + +   R    S+ A  +SA A   I+ + V   S+L +A
Sbjct: 130 EDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGA---IEHMPVIRVSSLIDA 186

Query: 81  IADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           I  L     +I  TT   R+                 +I     + I+ G E  G++   
Sbjct: 187 IKKLKEKGFWIAGTTLTERS-------------EDYTKIAKDVPLVIVVGNEGEGMSKVV 233

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
               + +   P+     SLN+S A  ++++E
Sbjct: 234 TNECDFLYHLPMLGKVQSLNVSVAAGIVMYE 264


>gi|269955191|ref|YP_003324980.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303872|gb|ACZ29422.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 168

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 18/182 (9%)

Query: 1   MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           M P+        +    ++  +P++  N G   R        +L LV P  G+  E+++ 
Sbjct: 1   MNPHLEAPAAPDEPFAHVVYFEPRIAGNTGSAIRLAAVTG-ARLHLVEPL-GFDLEESKL 58

Query: 60  SSANADCV-IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A  D   +  + V  +   A+  L              + V A +  A      +   
Sbjct: 59  RRAGLDYHDLAVLTVHPSFDAAMDAL------------PGRRVFAFEVGATTSYTSVAYQ 106

Query: 119 QNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               ++FG E  GL    +        +  P+ P   SLN++ A  +  +E         
Sbjct: 107 PGDVLLFGPEPTGLPPSVLDHPRITERVVLPMLPGRRSLNLTNAASIATYEAWRQLGFPG 166

Query: 177 EK 178
             
Sbjct: 167 AP 168


>gi|326336260|ref|ZP_08202431.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691434|gb|EGD33402.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 221

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 59/144 (40%), Gaps = 20/144 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R    F +    ++  + G   +   +    A+  + +++ +SN +  I +L 
Sbjct: 45  HNTSAVVRTCEVFGVQTTHIIEKKYGKRLDSKIAM--GAEKWV-TIKRYSNTQSCIEELK 101

Query: 86  F----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                I AT             P  +AI L E           FG ER GL+ E I+ ++
Sbjct: 102 LQGYRIVAT------------VPAPSAIPL-EHFNIDAKSAFFFGTERDGLSQEVISQAD 148

Query: 142 AIISFPVNPLFPSLNISQAVLLMV 165
             ++ P+     SLNIS +V +++
Sbjct: 149 EFLTIPMVGFTESLNISVSVAIIL 172


>gi|319408914|emb|CBI82571.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
          Length = 162

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 11/164 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R      +  + ++ P     S++    +      ++       
Sbjct: 9   IALFQPDIAGNTGTILRLSACLGVH-VHIIEPAGFNLSDRNLKRA--GMDYLEHA----- 60

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E   D      T    R+  + +L     A      I   +N  ++FGRE  G+ N  
Sbjct: 61  LLERHIDWQHFIET---MRHFNRRLLLLSTKAKTCYTDIRYQKNDVLLFGRESAGVPNYV 117

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
               +  ++ P+ P   SLN++ +V +   E +     +  +NV
Sbjct: 118 YEAVDHTLTIPMQPHARSLNLAMSVAITTGEALRQIGYNEIENV 161


>gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 310

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 24/163 (14%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----- 65
            A   V+IL       N+G V R+   F +  L +V  R   P   A + SA+       
Sbjct: 155 DAPATVVILDQVTDPHNVGAVLRSAAAFGIGAL-IVQDRHSPPLTAALAKSASGGLEHVP 213

Query: 66  --CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              V++  RV   LKE                 +F  +    E A   +  +  G+ V  
Sbjct: 214 VIEVVNLARVLEKLKE----------------RDFLCIGFDSEGAQRFDAALAGGRRVAF 257

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E  GL        +AI +        SLNIS A  ++  
Sbjct: 258 VFGAEDKGLRRLVREGCDAIAALSAPGPIKSLNISNAAAIVFH 300


>gi|119952855|ref|YP_945064.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
           91E135]
 gi|119861626|gb|AAX17394.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
           91E135]
          Length = 232

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 30/220 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADC 66
           L N      ++L D    +N     R +    L+ + ++   + +  +      ++    
Sbjct: 42  LSNRTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNTYTLNPGVVLGASKWID 101

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +I     +  ++ A  +L           N +K V    +   +  +       + I FG
Sbjct: 102 IIK----YQCVESAFDNL---------KGNGYKIVATSLDNEAIFLDDFPIDDKMAIFFG 148

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E  GL+N  +  ++  +  P+     S N+S AV ++ +  +     SS K +  ++  
Sbjct: 149 TELTGLSNTVLENADLHLKIPMYGFTQSYNLSVAVSIVFYSLISRLRKSSIKYLLNED-- 206

Query: 187 ATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
                        E  + +  Y+R + KK + ++ L  +F
Sbjct: 207 -------------EKLVLKLDYYRKIVKKYQTIEKLK-LF 232


>gi|22124024|ref|NP_667447.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM 10]
 gi|45439903|ref|NP_991442.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594392|ref|YP_068583.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
 gi|108809496|ref|YP_653412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua]
 gi|108813973|ref|YP_649740.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Nepal516]
 gi|145601108|ref|YP_001165184.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F]
 gi|150260899|ref|ZP_01917627.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           CA88-4125]
 gi|153947104|ref|YP_001399039.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|162419568|ref|YP_001604683.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
 gi|165926178|ref|ZP_02222010.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936350|ref|ZP_02224919.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011464|ref|ZP_02232362.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213686|ref|ZP_02239721.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402131|ref|ZP_02307608.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419397|ref|ZP_02311150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426644|ref|ZP_02318397.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468213|ref|ZP_02332917.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1]
 gi|218927258|ref|YP_002345133.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92]
 gi|229836148|ref|ZP_04456316.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           A]
 gi|229839886|ref|ZP_04460045.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841968|ref|ZP_04462123.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904503|ref|ZP_04519614.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|270488503|ref|ZP_06205577.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
 gi|21956767|gb|AAM83698.1|AE013610_10 putative RNA methylase [Yersinia pestis KIM 10]
 gi|45434758|gb|AAS60319.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51587674|emb|CAH19274.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777621|gb|ABG20140.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|108781409|gb|ABG15467.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua]
 gi|115345869|emb|CAL18727.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
 gi|145212804|gb|ABP42211.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           F]
 gi|149290307|gb|EDM40384.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           CA88-4125]
 gi|152958599|gb|ABS46060.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352383|gb|ABX86331.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
 gi|165915964|gb|EDR34572.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922038|gb|EDR39215.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989610|gb|EDR41911.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205088|gb|EDR49568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963391|gb|EDR59412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048506|gb|EDR59914.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054333|gb|EDR64150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678621|gb|EEO74726.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|229690278|gb|EEO82332.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696252|gb|EEO86299.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706596|gb|EEO92602.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           A]
 gi|270337007|gb|EFA47784.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
 gi|320013391|gb|ADV96962.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 230

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WP+ +  +   +A        V+   ++ +AIA
Sbjct: 30  PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSAAAGSNSWVQVKTHPHIADAIA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        ++++         + A+   E I   +   I+ G+E+ G++ E +AL++ 
Sbjct: 85  YL--------KSQDMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISPEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++    +  +  A   +     +
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYKRTHSVLAESEQQRLLFE 189


>gi|332638272|ref|ZP_08417135.1| 23S rRNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 171

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 17/174 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73
           I+L +P +  N G +AR        T+L L+ P      +K    +       D+V   V
Sbjct: 6   IVLFEPLMPANTGNIART--ATGTNTKLHLIEPLGFKLDDKHVKRA--GLDYWDTVDITV 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL          +  T ++ +    +      A    +      +   +FG+E  GL 
Sbjct: 62  HENLP--------AFMATLKDTDELFLISKFAPRAYHEADYTNPDHDYYFLFGKETTGLP 113

Query: 134 NEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
              +       +  P N     SLN+S    ++++E +      +     E + 
Sbjct: 114 EPFMKQHPEKALRIPQNDEHIRSLNLSNTAAIIIYETLRQQGFPNLDLTHEYDY 167


>gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
 gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
          Length = 183

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             +++L D +   N+G V R+   F +  + L       P  +   ++   +  ++  + 
Sbjct: 24  PLIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTALGGEDSVEW-KY 82

Query: 74  FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           F N ++A+ +LH    ++Y  +         +    +   V   +  + Q+  +I G E 
Sbjct: 83  FKNTEDAVNELHKKGYYVY--SIEQVEGSTKL----QNLEVDIRQHNTDQHYAMIMGNEV 136

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  + + +S+  +  P      SLN+S    +++WE  +N
Sbjct: 137 KGVKQQVVDMSDGCLEIPQFGTKHSLNVSTTAGIVIWEFAKN 178


>gi|160915913|ref|ZP_02078121.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991]
 gi|158432389|gb|EDP10678.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991]
          Length = 169

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 15/168 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVF 74
           ++L +P++ +N G + R     N T L L+ P      E+    +   D V  +D  RV+
Sbjct: 4   VVLYEPEIPQNTGNIMRTCMASN-TVLHLIEPLGFSLDEQHLKRA-GMDYVKDLDY-RVY 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N +E          T+     N+  +    + A    +      ++ +I G+E  G+  
Sbjct: 61  KNWEEF---------TSQNPSENYYYMTRYGKKAPSAFDFTSCVGDIYLILGKESTGIPK 111

Query: 135 EEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           E +    +  +  P+     SLN+S    ++V+E +         NV+
Sbjct: 112 EILKHQLDHCMRLPMVAKARSLNLSNCAAIIVYEVLRQLDYPGLSNVE 159


>gi|311745086|ref|ZP_07718871.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
 gi|126577599|gb|EAZ81819.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
          Length = 179

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G   R    F + ++ L       P    + ++  A   ++    +    +A+ +L  
Sbjct: 37  NVGSAFRTGDAFRVEKIMLCGITGTPPHRDIQKTALGATESVEW-EHYPQTVDALKEL-- 93

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                 + +      L   + +I L E +    + + ++FG E +G+ +E + L + ++ 
Sbjct: 94  ------KKQGYTLCALEQVDQSIFLQEYQPDPKEKIALVFGNEVFGVEDEVLELCDHVLE 147

Query: 146 FPVNPLFPSLNISQAVLLMVWECM 169
            P      SLNIS  + + VW  M
Sbjct: 148 IPQLGTKHSLNISVTLGISVWHMM 171


>gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 262

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L     G  ++L   Q   N+G + R+     + +     P   +  S K   S+  
Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  +  
Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176
           +FG E  G++      +   ++ P      SLN++ A  + ++E C +   + +
Sbjct: 209 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 262


>gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 256

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 17/165 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
           G  IIL + Q   N+G + R+   FN+  +  +N      + KA  S+  +   +   + 
Sbjct: 106 GLYIILDEVQDPGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFHLPVVND 165

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L EA+             RN  + VL+    A          +N+ +IFG E  G
Sbjct: 166 VPVDKLFEALK------------RNGVR-VLSTNLKAEKYIYDCDISKNIALIFGNESRG 212

Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + N+ +    +     P++ +  SLN+S A  + ++E     ++ 
Sbjct: 213 V-NKSLDIYVDGSFKIPMDGMAESLNVSVAASICLYESQRQRLIK 256


>gi|149200214|ref|ZP_01877236.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149136656|gb|EDM25087.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 151

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L  P + +N G + R     +   L L+ P      EK    +         V+  + 
Sbjct: 3   IVLFQPLIPQNTGTIGRLTVCTD-NDLHLIKPLGFELDEKKIKKA--GMDYWPHVKLHIH 59

Query: 75  SNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            + ++ +     D   ++ TT   +  ++      +                +IFG E  
Sbjct: 60  ESWEDFLNNTPEDKTMVFCTTKCKKTIYEHTFTEDDY---------------LIFGNESH 104

Query: 131 GLTNEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
           GL  E      +++ + P+      S N++ +V ++ +E +  
Sbjct: 105 GLPPEFYENFQDSLCTIPMRGDHLRSHNLANSVSIVTYEAIRQ 147


>gi|312869514|ref|ZP_07729669.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris
           PB013-T2-3]
 gi|311094961|gb|EFQ53250.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris
           PB013-T2-3]
          Length = 169

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 40/172 (23%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           I+L +P    N G +AR     N   T+L L+ P      +K    +       D V++ 
Sbjct: 5   IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----------SGQNVG 122
              +L   +A +                   P    + +  +               +  
Sbjct: 60  YHDDLPAFLATI-------------------PDMEKLYIVSKFANHDYTDVDYTGAGDHY 100

Query: 123 IIFGRERWGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172
            +FG+E  GL    +       I  P N     +LN+S +  ++++E +   
Sbjct: 101 FLFGKETTGLPEAFMRKYPENAIRIPQNDDNIRALNLSNSAAIVIYEALRQQ 152


>gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
 gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
          Length = 245

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 29/176 (16%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +  + P    IL       N+G   R      +    +V P+D     +  A   + 
Sbjct: 88  KLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGVQ--AVVAPKDKSAPLNATAAKVAC 145

Query: 63  NADC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            A        V +  R   +L+E          TT         +            +  
Sbjct: 146 GAAESVPYVLVTNLARTLKSLQE------RGVWTTGTAGETDLDIY-----------QAN 188

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + +I G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 189 LKGPMALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLFEAVRQR 244


>gi|328869255|gb|EGG17633.1| hypothetical protein DFA_08629 [Dictyostelium fasciculatum]
          Length = 352

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 17/186 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  ++LVD +   NIG V R         + L       P  +   +S  A+  ++    
Sbjct: 167 GLGVLLVDCRSLANIGSVFRTSDGAGFNHVYLCGITGTPPRNEILKTSLGAEEFVNWSYC 226

Query: 74  FSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIV-------LNERIFSGQNVG 122
             +L   I +L      I A      +    +L   +            +E+      + 
Sbjct: 227 HESLH-CIKELKRKGVKIIA--IEQSDKSIPLLESLDYLYENTKINNNQSEQQQQHSPIC 283

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW---ECMENSIVSSEKN 179
           ++FG E  GL+ E I   + I   P+     SLNIS A  +  +   E  +N IV +   
Sbjct: 284 VVFGNEIVGLSEEIIKECDFICDLPMKGQKRSLNISVAFGITSYVLSEKFKNIIVDNHLG 343

Query: 180 VKEQNT 185
           +++ N 
Sbjct: 344 IEKINP 349


>gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 245

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L +    P +++L       N+G   R      +    +V PRD     +  A+  + 
Sbjct: 86  PDLLSQLDRPFLLVLDGVTDPHNLGACLRTADAAGV-DAVIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  +RV +             A T R    +N   V    EA   L E   +G  
Sbjct: 144 GAAENVPLIRVTN------------LARTLRLLQEHNIWIVGTAGEATHALYESKLTG-P 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIVRQR 242


>gi|189500046|ref|YP_001959516.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
 gi|189495487|gb|ACE04035.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
          Length = 180

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 59/165 (35%), Gaps = 25/165 (15%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L + +   N+G V R      + +L +       P ++   ++  A   +D    
Sbjct: 28  PVTVLLHNIRSMYNVGSVFRTADAAGIDRLIITGYTATPPRKEIDKTALGAQESVDW-EY 86

Query: 74  FSNLKE---AIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           +++ +E    + D             +R   + K    P                + +I 
Sbjct: 87  YTHPEEILGVLKDSGVTICGLEITENSRPYTDIKKDDFP----------------LCLIL 130

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+ ++ +   + +   P      SLN+S A  + ++E ++
Sbjct: 131 GNEVDGIDDDVLQFCDHVFEIPQYGTKHSLNVSVAAGVALYEMVK 175


>gi|116512002|ref|YP_809218.1| rRNA methylase (SpoU class) [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107656|gb|ABJ72796.1| Predicted rRNA methylase (SpoU class) [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 169

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I L +P++  N G +AR     N T L L+ P     S+K    +       D V +   
Sbjct: 4   IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRA--GLDYWDKVNIVYH 60

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +  ++IAD   +Y  +    + +  V    +            ++   +FGRE  G
Sbjct: 61  KNLQDFMDSIADGGQLYLVSKFAEHVYSDVDYSDDE-----------KDHYFLFGREDTG 109

Query: 132 LTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           L  E +    +  I  P+N     SLN+S    ++V+E ++  
Sbjct: 110 LPEEFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152


>gi|218961471|ref|YP_001741246.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730128|emb|CAO81040.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 269

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 10/164 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P ++  AK   +I  + +   N+G + R      + ++ +              ++   +
Sbjct: 110 PDIRQKAKRITVICDNLRSVFNVGSLFRTAECLGIGKIIVCGITPTPEHSNMPKTAMGTE 169

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++   + F +  EAIA  H            F   L   + A  + + ++    + I+ 
Sbjct: 170 KLVAW-QYFPSTTEAIAFCH--------QEGFFIYALETIDNAKSVFQTVYQ-FPLAIVI 219

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           G E  G+ +  + L +  I+ P      SLN+  A  +++++ +
Sbjct: 220 GNEALGIESSILELCDEFITLPQLGWKNSLNVGVATGIVLYQIL 263


>gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
           ATCC 35236]
 gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
           ATCC 35236]
          Length = 246

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQRALKA 246


>gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
           nubinhibens ISM]
 gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
           nubinhibens ISM]
          Length = 259

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 20/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82
             N+G + R+   F      ++ PR G  + +  + +  A   ++        NL +AI+
Sbjct: 121 PHNVGAILRSAEVFGAQ--AVIAPRHG-SAPETGALAKTASGALERQPYLRVRNLADAIS 177

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +L      +        +   + L                + V ++ G E  GL  +   
Sbjct: 178 ELQAMGFLVLGLAGEAEDTIDAALD-----------GMRDRPVALVLGAEGPGLRQKTRE 226

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + ++  P    F SLN+S A  + ++   E 
Sbjct: 227 TCDKLVKIPFAGGFGSLNVSNAAAVSLYASRER 259


>gi|310764912|gb|ADP09862.1| putative methyltransferase [Erwinia sp. Ejp617]
          Length = 344

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 15/171 (8%)

Query: 3   PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P +  L  + +   ++ L D     N+G + R+  +F    L LV+      S  A  ++
Sbjct: 185 PVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243

Query: 62  -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A+ V           +AI+   F     A  +  +  V       + L+      + 
Sbjct: 244 EGGAEHV-----------QAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAKM 292

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           V ++ G+ER GL++      +  +S        SLN+S A  +++ E    
Sbjct: 293 V-LVLGQERDGLSDSTFQQGDLSVSISGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|241764399|ref|ZP_04762424.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
           2AN]
 gi|241366189|gb|EER60760.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
           2AN]
          Length = 168

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV+P++  N G V R   N   T L L+ P      ++    +       +  +V   
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCT-LHLIEPLGFSMEDRLMRRA--GLDYHEYAQVLRH 60

Query: 74  ---FSNLKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               + L++A  D   ++A TT   +  F++   P +                ++FG E 
Sbjct: 61  PGWTAFLRQAQPDPARMFALTTHGTQTAFETCFLPGDW---------------LVFGAET 105

Query: 130 WGLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  E  E       +  P+     SLN+S AV + V+E    
Sbjct: 106 RGLPPELRETFPPAQRLRLPMVSGQRSLNLSNAVAVTVFEAWRQ 149


>gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 239

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL +     NIG + R+   F    + + N      + K   SS  A  +  ++ + S
Sbjct: 96  TVILNNVSDPGNIGTILRSALAFEFDTVIIEN--IDIYNPKIIRSSLGA--IFSNLNIIS 151

Query: 76  N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L+E + DL        + +N           A  LNE  F  + + ++ G E  G+ 
Sbjct: 152 TSNLEEILKDL--------KAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGID 203

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              I  ++  +  P+   F SLN++ A+ +++
Sbjct: 204 KNLIKYASEKVYIPI--AFESLNVASALAIIL 233


>gi|108758120|ref|YP_629729.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus
           xanthus DK 1622]
 gi|108462000|gb|ABF87185.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus
           xanthus DK 1622]
          Length = 225

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 20/185 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVF 74
            ++L   +   N+  V R   +  + ++ ++ NP   +        +   D  +D V+++
Sbjct: 42  TVVLDRLEDSFNMAAVLRTCESMGVQEVHIIINPEAPFVPNS--RVAQGCDKWLD-VKLY 98

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               E    L        ++R       A +E A  L    F G  + ++FG ER G++ 
Sbjct: 99  RTFAECREHL--------KSRGFSLYASAIQEGATSLYTLRFDG-KMALVFGNERRGVSE 149

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL-- 192
           + +A  +     P+     SLNIS A       C+  +I   ++++ +    + +     
Sbjct: 150 DVLAGVDGTFWVPMKGFSQSLNISAAAS----ACISRAIAWRDEHLGQSGDLSPEDAQAL 205

Query: 193 -LSFL 196
              F 
Sbjct: 206 RERFY 210


>gi|71894580|ref|YP_278688.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 237

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 16/152 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL +     NIG + R+   F    + + N      + K   SS  A  +  ++ + S
Sbjct: 94  TVILNNVSDPGNIGTILRSALAFEFDTVIIEN--IDIYNPKIIRSSLGA--IFSNLNIIS 149

Query: 76  N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L+E + DL        + +N           A  LNE  F  + + ++ G E  G+ 
Sbjct: 150 TSNLEEILKDL--------KAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGID 201

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              I  ++  +  P+   F SLN++ A+ +++
Sbjct: 202 KNLIKYASEKVYIPI--AFESLNVASALAIIL 231


>gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis Bt4]
 gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264]
          Length = 262

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 16/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L        ++L   Q   N+G + R+     + Q     P   +  S K   S+  
Sbjct: 104 APALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQ-VFCAPGTAYAWSSKVLRSAMG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  V  
Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLTG-PVAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +FG E  G++      +   ++ P      SLN++ A  + ++E          
Sbjct: 209 VFGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA 262


>gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38]
 gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38]
          Length = 220

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 77/188 (40%), Gaps = 25/188 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F + +L +V  + G   +K  +    A+  +D +  FS++++ I +L 
Sbjct: 46  HNTSAVMRSCEVFGIQELNVVEQKFGKSIDKEIAM--GAEKWVD-INRFSSIQDCITNLK 102

Query: 86  F----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                I ATT            P   + +L+E   + Q   + FG ER GL+ E +  ++
Sbjct: 103 QKGYQIIATT------------PHNDSCLLHEFDIT-QPSALFFGTERDGLSEEVMQQAD 149

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEI 201
             +  P+     SLNIS +  +++       I +  +             L   LD+   
Sbjct: 150 GFLKIPMVGYTESLNISVSAAIII-----QDITNRLRQSDIYWKLTEDEVLEKRLDWTRK 204

Query: 202 SLEERGYF 209
           ++++  + 
Sbjct: 205 TIKDIDFI 212


>gi|254422310|ref|ZP_05036028.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196189799|gb|EDX84763.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 269

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 28/166 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--------ADCVI 68
           +IL   Q   N+G + R         L L +        K   +S             V+
Sbjct: 118 VILETLQDPGNLGTIIRTSAGVGSDGLWLSHDSVDLGHPKVLRASVGQWFRMPMATVDVV 177

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +     S L++    +  + ATTA    ++  +   +                  + G E
Sbjct: 178 EQA---STLRQ--NGVQ-VVATTAAAELDYWQLDLQR--------------PTVFLMGNE 217

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             GL++  +A ++  +  PV P   SLN++ +  L+++E      V
Sbjct: 218 GAGLSDALMACASVTVKIPVAPEVESLNVAISTALLLYEAKRQRQV 263


>gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
 gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
          Length = 228

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 18/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81
             N+  V R      + ++  V     WP EK R+ S   A A   ++ V     + +A+
Sbjct: 30  PNNVSAVIRTADAAGVHKVHAV-----WPDEKMRTLSHTSAGARNWVE-VETHDTVADAV 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T +++          E A+   + I   +   II G E+ G+T + +  ++
Sbjct: 84  R--------TLKSQGMQVLATNLSENAVDFRD-IDYTKPTAIILGGEKHGITQDALTEAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             I  P+  +  SLN+S A  L+++E       +   +      P
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILFEAQRQRQNAGLYDRDVSALP 179


>gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 246

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           LQ+ +   ++IL       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LQHKSNPLLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSATLTAIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  +RV +             A T R   +++    V    EA   +     +G  + 
Sbjct: 147 EAMPLIRVTN------------LARTMRELQDKHQIWIVGTAGEATTDIYTSQLTGA-IA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++ G E  G+        + ++S P+     SLN+S A  + ++E +   +
Sbjct: 194 LVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQKL 244


>gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
 gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
          Length = 302

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G V R+   F +  + L   R    S     ++A    ++D  R  +NL
Sbjct: 150 VLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRT-TNL 208

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A+  L          ++ F    A  EA+  L E  F+G    ++ G E+ G+     
Sbjct: 209 AGALGTL---------KKHGFWIYGASGEASGNLYETDFTG-PTCLVLGNEQKGIRPLLK 258

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
              + +++ P+     SLN+S A  +M+ E        +     
Sbjct: 259 KHCDFLLAIPLAAGVESLNVSVAAGIMLVEIRRRQHFFAPGEPA 302


>gi|254822692|ref|ZP_05227693.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 154

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P++  N G   R        +L LV P     SE     +      + SV V ++L  A
Sbjct: 8   SPRIAPNTGNAIRTAAATGC-ELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVHASLAAA 66

Query: 81  IADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
              L    ++A T+               A     ++       ++FG E  GL    +A
Sbjct: 67  WDALSPERVFAFTS--------------HAPTSFAQVRYRAGDVLMFGPEPTGLDAATLA 112

Query: 139 LSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             +    +  P+     SLN+S A  + V+E       +   
Sbjct: 113 DPHITGQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGYAGAT 154


>gi|152991299|ref|YP_001357021.1| RNA methyltransferase [Nitratiruptor sp. SB155-2]
 gi|151423160|dbj|BAF70664.1| RNA methyltransferase, TrmH family [Nitratiruptor sp. SB155-2]
          Length = 227

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 13/139 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NIG + R+ +   +  L +   +D       R SS  A  +  +++   NL +AI +L 
Sbjct: 95  GNIGSIVRSAYALGVDGLVISGLKDLKMEGVIRRSSGAALDLPIALQF--NLYDAIKELQ 152

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                   +RN    V A       +  + F G+   I+ G E  G+  + +   N I+ 
Sbjct: 153 --------DRNFL--VYAADMQGEDVRTKRFHGKR-AILLGSEGEGVPKKAVQKCNEILK 201

Query: 146 FPVNPLFPSLNISQAVLLM 164
             +   F SLN++ A  + 
Sbjct: 202 IEMKRDFDSLNVAAAAAIF 220


>gi|332520835|ref|ZP_08397295.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043365|gb|EGI79561.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 220

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 22/145 (15%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFSNLKEAIADL 84
            N   V R+   F + +   VN  +   +++  R  +  A   +D  R +  +K+AI D+
Sbjct: 44  HNTSAVIRSCDVFGIQE---VNIVEEVNAKRIDREIAMGAQKWVDLNR-YHTVKDAIQDV 99

Query: 85  HF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 + ATT            P      L +   + +     FGRE  GL+ E +  +
Sbjct: 100 KQKGYQVVATT------------PHANDCNLRDFDVT-KKSCFFFGRETEGLSQEVLDEA 146

Query: 141 NAIISFPVNPLFPSLNISQAVLLMV 165
           +  +  P+     SLNIS +  +++
Sbjct: 147 DVFLKIPMVGFTESLNISVSAAIIL 171


>gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 270

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 22/174 (12%)

Query: 4   YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            +P L     G V   V+  Q   N+G + R +       L L        + K   +SA
Sbjct: 106 SSPPLSKLRLGLV---VETLQDPGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASA 162

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                    +V  +L   I         + A T          L+P        +     
Sbjct: 163 G-QWFRRPPQVVPDLAAWIQSCRCHGIQVLAAT----------LSPTANCYWDQDLT--- 208

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    + G E  GL    I  ++A +  P+     SLN++    L+++E +   
Sbjct: 209 RPTLFLLGNEGAGLREATIQQADAQVRIPMAEGVESLNVAMTGGLLLYEALRQR 262


>gi|78356529|ref|YP_387978.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218934|gb|ABB38283.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 196

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   ++L +     N+  + R+   F ++++ L      +P    RSS++ A   +++ R
Sbjct: 22  KDLTLVLANIHDPHNVSAIYRSCDAFGVSRVHLYYTDTPFPPLSGRSSAS-ARKWVETER 80

Query: 73  VFS--NLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                 L  A+       I AT+     + + +                     II G E
Sbjct: 81  HEDPAQLAAALRKKGC-RILATSCSP--SARPLREWDMTGP-----------TAIIMGNE 126

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK---EQNT 185
             G+  E + + +  +  P+  +  S N+S A  +++ E       + +       E+  
Sbjct: 127 HRGVDAELMEIVDGEVYIPMFGMIQSFNVSVAAAVILSEASRQRQQAGKYETPTYTEEEY 186

Query: 186 PATKGELLS 194
            A   E L+
Sbjct: 187 AAVLEEWLA 195


>gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           profundus DSM 5631]
 gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           profundus DSM 5631]
          Length = 232

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 12/149 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +  +N+G + R+   F    + +   R    +E     SA A   +D  RV  NL   + 
Sbjct: 92  EDPQNMGAIMRSAEFFGCAGVVIPKRRCVQVNETVAKVSAGAVFHLDIARV-ENLANILK 150

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L     T      + + +     +  +            I+ G E  GL+       + 
Sbjct: 151 KLKKFGITVVGADLDGEPLRNVDLSPPL-----------AIVVGGEDKGLSKPVKKQCDF 199

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I          SLN+S A  ++++E    
Sbjct: 200 IAKIEGYGKINSLNLSVAGAIIMYEFRRR 228


>gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402]
          Length = 258

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 12/164 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L     G V+IL       N G + R+   F +  + +   +     E     SA A  
Sbjct: 103 KLAEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALA 162

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  V V +           +  T  R +     +         L +  F  + V +I G
Sbjct: 163 WVPFVEVTN-----------LVRTVERLKKEGFWIYGADAVGKALPDLTFPKKTV-LIMG 210

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            E  G++       + I+S P      SLN+S A  ++++E   
Sbjct: 211 SEGRGMSRLVEETCDEIVSIPTKGKLDSLNVSVAAGILLYEISR 254


>gi|261250548|ref|ZP_05943123.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260939117|gb|EEX95104.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 227

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      + ++  V     WP E      +SA A   +D V    N+++AIA
Sbjct: 30  PNNVSAVIRTADATGIHKVHAV-----WPHEMRTLSHTSAGARNWVD-VETHDNIEDAIA 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G + +   L++ 
Sbjct: 84  EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +  + P
Sbjct: 135 DIIVPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDNEVSSVP 178


>gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 15/157 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           IIL   +   N+G + R+  +F    + +   R    +     +SA A   I++++V   
Sbjct: 87  IILDKIEDPHNLGAIIRSAESFGFDGVIIPERRSASVTSTVYKTSAGA---INNIKVIRV 143

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +NL   I DL             F       EA   +++    G  V ++ G E  G++ 
Sbjct: 144 TNLTRTIKDL---------KDMGFWIYGLAGEADSDISKADLKG-KVTLVIGNEGEGISR 193

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 + +I+ P+     SLN S A  + ++E +  
Sbjct: 194 LVRENCDMLINIPMLGKVNSLNASVAAGISMYELLRQ 230


>gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii
           SP-6]
          Length = 244

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 23/173 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62
            L ++ +GP ++LV        N+G   R           ++ P+D      A  +  ++
Sbjct: 87  DLLDAVEGPPLVLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGVNATVAKVAS 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +    V +    L E       +  T+              E A      I    
Sbjct: 145 GAAETVPYFMVTNLARTLNELKERDIRVIGTS--------------EDATQSIYDIDLSG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            V I+ G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 191 PVAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASAVCLYEALRQR 243


>gi|291320023|ref|YP_003515281.1| rRNA methylase [Mycoplasma agalactiae]
 gi|290752352|emb|CBH40323.1| rRNA methylase [Mycoplasma agalactiae]
          Length = 243

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-F 74
           V+ L + Q   N+G + R   +F       V     + ++K   SS  A   ++ V   +
Sbjct: 98  VVFLDNVQDPGNVGTIIRIAKSFGFDT---VVSNVNFYNDKVIRSSQGALFTVNLVNYNY 154

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLT 133
            NL   +             +N FK      + + V  E++ F      I+FG E  G++
Sbjct: 155 DNLTNILLKY---------KQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGIS 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +++ +I  P+N  F SLN++    ++++E  + 
Sbjct: 206 SALADIADMLIYVPIN--FESLNVAVCAGIVLYEANKA 241


>gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
 gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
           4]
 gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
 gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
 gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei DM98]
 gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 14]
 gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 9]
 gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei B7210]
 gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 7894]
 gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei BCC215]
 gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           MSHR346]
 gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106b]
 gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
 gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
 gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
 gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
 gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
 gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710a]
 gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
 gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
 gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
 gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344]
 gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1]
 gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229]
 gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668]
 gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106a]
 gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247]
 gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
 gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
 gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
 gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
 gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
 gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
 gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
 gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
 gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           MSHR346]
 gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
           4]
 gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106b]
 gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
 gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710a]
          Length = 262

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L     G  ++L   Q   N+G + R+     + +     P   +  S K   S+  
Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  +  
Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176
           +FG E  G++      +   ++ P      SLN++ A  + ++E C +   + +
Sbjct: 209 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 262


>gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
 gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
          Length = 267

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 11/141 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+          L+ PR   P   ++   +  A   +   R+     EA+  L 
Sbjct: 132 NVGAIFRSGAALGF-DAVLLAPRCADPLYRRSIKVAMGAVFALPWTRLLDWY-EALPSLS 189

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
               TT          L   + A+ + + +     V ++ G E  GL+      ++    
Sbjct: 190 AAGFTTV--------ALTLADDAVDIEKAVEGVDKVALVLGSEGHGLSPRWQQAADRRAI 241

Query: 146 FPVNPLFPSLNISQAVLLMVW 166
            P++    SLN++ A  +  +
Sbjct: 242 IPMSAGIDSLNVAAATAVACY 262


>gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulovorans 743B]
 gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B]
 gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulovorans 743B]
          Length = 309

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL + +   N+G + R      +  + +   R+   +     +SA A   +   +V  
Sbjct: 162 IIILDEIEDPHNLGAILRTAEVCGVHGVVIPKRRNVGITPTVYKTSAGAVQYMKVAKV-P 220

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+   I  L          +       A  +  +   +  F G    +I G E  G++  
Sbjct: 221 NINSVIDSL---------KKKGIWIYGADMDGKVYCQDANFRGA-AALIIGSEGRGISKL 270

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                + ++  P+     SLN S A  ++++E +   +
Sbjct: 271 TKEKCDLLVKIPMVGQITSLNASVAGGILMYEILTQRM 308


>gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
 gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
          Length = 259

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+   F    + L +      + K   +S  A   +  + V + +  AIA
Sbjct: 118 QDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRVPVMEVGA-MPAAIA 176

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     R +N      A  ++  +   R      V ++ G E  GLT E IA  + 
Sbjct: 177 --------ALRAKNITCLAAALYQSQPLSAARPGYPGGVCVVIGSEGQGLTEETIAACSG 228

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  P+     SLN   A  +++W   E S+
Sbjct: 229 TVRIPMTDRVESLNAGIAGSILLWHFREESL 259


>gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
 gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
          Length = 229

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 26/178 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAI 81
             N+  V R      + ++        WP EK R     +A ++  + +V     + +A+
Sbjct: 19  SHNVAAVIRTADAVGIPKIH-----AIWPEEKMRMLVSPAAGSNSWV-NVETHPTITDAV 72

Query: 82  ADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                    + AT   ++            A+   E I   +   II G+E+ G++ + I
Sbjct: 73  GAFRTQGMQVLATHLSDK------------AVDFRE-IDYTRPTCIIMGQEKTGISQDAI 119

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           AL++  I  P+  +  SLN+S A  L+++E       +   N  E      + ++L F
Sbjct: 120 ALADQDIIVPMMGMVQSLNVSVASALILYEAQRQRQAAGMYNRTESTLTEEEQQILLF 177


>gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
 gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
          Length = 262

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 13/175 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +++      V++L+  +   N+G + R+        L LV       S +   +S     
Sbjct: 101 EVRLPQDPLVLVLLGLEKPGNLGAILRSADGAG-AHLVLVAEGVDLYSPQVIRNSTG--- 156

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V+ S+ VF   +E  A            +  +     P+   +   E    G  V  + G
Sbjct: 157 VVFSLPVFPVAEEEAARF-------LEEKGLYPVAATPRGERVYWEEDYRRG--VAFLLG 207

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E  GL    +  + A +  P+     SLN++ +  L+++E +    +       
Sbjct: 208 AEDRGLPEVWLKRAQARVRIPMRGRADSLNVAVSAALLLYEALRQRSLHDPPQPP 262


>gi|44662935|gb|AAS47553.1| putative RNA methylase [symbiont bacterium of Paederus fuscipes]
          Length = 158

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL  P++  N G + R   N     L L+ P       K    +        +VR + +
Sbjct: 4   IILFQPEIPPNTGNIIRLCANAGCG-LHLIEPLGFELDNKRLRRAGLDYHEYTNVRRYPD 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT- 133
           L+  +  L    ++A T +    F  V   +                  +FG E  GL  
Sbjct: 63  LRSCLESLAQPRLFAFTTKGSRAFHEVDYQR--------------GDAFLFGPESRGLPG 108

Query: 134 ---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              N  +      +  P+     SLN+S  V + V+E    
Sbjct: 109 RVRNALLPE--QRLRLPMRGGCRSLNLSNTVAIAVYEAWRQ 147


>gi|282600474|ref|ZP_05974442.2| RNA methyltransferase, TrmH family, group 2 [Providencia
           rustigianii DSM 4541]
 gi|282565196|gb|EFB70731.1| RNA methyltransferase, TrmH family, group 2 [Providencia
           rustigianii DSM 4541]
          Length = 233

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 33/173 (19%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+L +P++  N G + R   N   + L L++P      +K    +      +D    +
Sbjct: 68  PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPLGFTWDDKRLRRAG-----LD----Y 117

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------------ 122
           S   + I   H  YA            L P         R+F+    G            
Sbjct: 118 SEFAD-IKHHHDYYAF------LESEGLNPDNNQSESGTRVFALTTKGKPSHSNVSYRED 170

Query: 123 --IIFGRERWGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++FG E  GL    +        I  P+     S+N+S +V ++V+E    
Sbjct: 171 DYLMFGPETRGLPPYVLDNMPMEQKIRIPMLAESRSMNLSNSVAVVVFEAWRQ 223


>gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
 gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
          Length = 319

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL +     N G + R         + +   R    +     +SA A   +   RV +
Sbjct: 172 IIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVSKASAGAVEYVPVSRVTN 231

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               ++    +  ++  T                              + ++ G E  G+
Sbjct: 232 ISQTIEYLKKNNVWVVGT--------------DSTGEKAFYESDLKGPMALVVGSEGEGM 277

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + +++ P+     SLN S A  ++++E ++  
Sbjct: 278 GKLVREKCDFVVNIPMKGEISSLNASVAAAIVMYEILKQR 317


>gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae
           BGR1]
 gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae
           BGR1]
          Length = 260

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 18/170 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A  L     G V++L   Q   N+G + R+     + Q+  V+      S K   S   A
Sbjct: 104 AAALPERVTGTVVVLDGVQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGA 163

Query: 65  DCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             ++D   +  +++ A  IA L    A T                     +       V 
Sbjct: 164 HFLLD---IHEDVEAADLIARLGVPVALT-------------DSHGARAIDDCDLSGPVA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +FG E  G++      +   ++ P      SLN++ A  + ++E     
Sbjct: 208 WVFGNEGAGVSAPWREAAKLRVTIPQPGGMESLNVAAAAAVCLFEQCRQQ 257


>gi|126696336|ref|YP_001091222.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543379|gb|ABO17621.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9301]
          Length = 160

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 24/165 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L +P++ +N G +AR+   F++  L L+ P      +K    +      + +V  + N
Sbjct: 3   VALFEPRIPQNTGNIARSCAAFDIP-LNLIEPLGFKLEDKYLKRAGLDYWPLVTVNRYEN 61

Query: 77  LKEAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +       F+ A TT R       +   K+  + L +  F   ++ ++FGRE  GL + 
Sbjct: 62  FE------KFMTAKTTKR------IISFSKKNGLYLKDFKFKQDDI-LLFGREDSGLPDS 108

Query: 136 EIALSNAIISF--P----VNPLF---PSLNISQAVLLMVWECMEN 171
            I  S+ +IS   P     N       SLN+S A  + ++E  + 
Sbjct: 109 IIDKSDFLISIFMPNIQTGNNDQKGVRSLNLSVACGIAIYEAHKQ 153


>gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK
           1622]
          Length = 282

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 11/166 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V++L   Q   N+G + R+        + +   R    +     +SA A       R
Sbjct: 128 PPLVVVLDGIQDPHNLGAIIRSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIAR 187

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  N+  A+ +L          +     V A    A            + ++ G E  G+
Sbjct: 188 VV-NISRALEEL----------KEAGLWVAAADVDAKEPMWSARLDGPLALVVGAEGAGV 236

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +  +   +  +  P+     SLN S +  ++++E        S +
Sbjct: 237 RDGVLKHCDFRLRIPMAGQVGSLNASVSAGILLYEVARQRGTVSGR 282


>gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 193

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 23/177 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L +     V++L   Q   N+G   R         L  V P+D     S+     +    
Sbjct: 32  LADKPNPLVLVLDCIQDPHNLGACLRTADAAGC-DLV-VMPKDKTAPISDTVIRVACGGA 89

Query: 66  CVIDSVRVFSNLKEA---IADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   RV +NL  A   + DL  +   T              ++        +     +
Sbjct: 90  ENVPIARV-TNLARAMDKLKDLGVWFVGT--------------EDEGKQSIYDVDLKGPI 134

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GI+ G E  G+        + ++  P+    P LN+S A  + ++E +   +    +
Sbjct: 135 GIVMGAEGEGMRRLTGERCDFLVKIPMTGQVPCLNVSVATGVCLFEVVRQRLSGGGR 191


>gi|149908558|ref|ZP_01897220.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36]
 gi|149808392|gb|EDM68329.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36]
          Length = 228

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  V R      +  +  V      P++ +  ++  +   +  V    N+  AI +L
Sbjct: 30  PHNLAAVVRTCDAVGVNNVHAV--WSIRPTKVSGGTATGSQNWV-KVHSHDNIAAAIKEL 86

Query: 85  HF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 + AT     N   + +  ++        I   +   I+ G+E+ G++ E +AL+
Sbjct: 87  KAQGMQVLAT-----NLSDTAVDFRD--------IDYTKPTAILMGQEKTGISAEALALA 133

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           +  I  P+  +  SLN+S A   +++E        +    + ++  + + +   F +
Sbjct: 134 DQDIIIPMVGMVQSLNVSVATATILYEAQRQR--DNAGMYQGESKLSAEEQHKIFFE 188


>gi|157413366|ref|YP_001484232.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9215]
 gi|157387941|gb|ABV50646.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9215]
          Length = 160

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 26/164 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76
           L +P++ +N G +AR+   FN+  L L+ P      +K    +         V V  + N
Sbjct: 5   LFEPRIPQNTGNIARSCAAFNIP-LNLIEPFGFKLEDKYLKRA--GLDYWPLVTVNKYDN 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++ +A           ++   + +   K   I L +  F   ++ ++FGRE  GL +  
Sbjct: 62  FEKFLA-----------SKATKRIISFSKRNGIYLKDFKFKHDDI-LLFGREDLGLPDYI 109

Query: 137 IALSNAIISF---------PVNPLFPSLNISQAVLLMVWECMEN 171
           I  S+ +IS                 SLN+S A  + ++E  + 
Sbjct: 110 IDKSDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAIYEAHKQ 153


>gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630]
 gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
 gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
 gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3
           [Clostridium difficile]
 gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
 gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
          Length = 248

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +     N+G + R         + +   R    +     +SA A   +   +V + 
Sbjct: 100 IILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTN- 158

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                     I  T  R +     + A         ++  +G  +G++ G E +G++   
Sbjct: 159 ----------IVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGFGISRLV 207

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + I+  P+     SLN S A  ++++E     +  S
Sbjct: 208 KQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLDKS 247


>gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP
           107932]
 gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC
           43255]
 gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-32g58]
          Length = 245

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +     N+G + R         + +   R    +     +SA A   +   +V + 
Sbjct: 97  IILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTN- 155

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                     I  T  R +     + A         ++  +G  +G++ G E +G++   
Sbjct: 156 ----------IVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGFGISRLV 204

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + I+  P+     SLN S A  ++++E     +  S
Sbjct: 205 KQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLDKS 244


>gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 296

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 11/177 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++ ++    V +L + +   N G V R         + L +      + K+  +S  + 
Sbjct: 129 QEILDARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSL 188

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123
             +        + +A+  L        R+            A  + +E      G     
Sbjct: 189 FHLPVAVGVP-VDQAVQGL--------RDAGVRILAADGAGADDLDDELDAGTMGTPTAW 239

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           IFG E WGL  E  AL++A++  P++    SLN++ A  + ++            + 
Sbjct: 240 IFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 296


>gi|161870027|ref|YP_001599196.1| RNA methyltransferase [Neisseria meningitidis 053442]
 gi|161595580|gb|ABX73240.1| RNA methyltransferase [Neisseria meningitidis 053442]
          Length = 261

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  +   
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFL--- 165

Query: 71  VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             ++   +L+  +A     ++AT  R              A++ NE +   +    +FG 
Sbjct: 166 SEIYPQADLEIWLASYKGRVFATALREEK----------QAVLYNEDLR--EPTAWVFGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRSA 260


>gi|134098676|ref|YP_001104337.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003638|ref|ZP_06561611.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911299|emb|CAM01412.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 152

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 30/170 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVFS 75
           ++   P++  N G   R M   +   L L+ P  G+  + A+   A  D    +   V  
Sbjct: 4   VVFYHPEIPGNTGNAIR-MAAGSGAALHLIEPL-GFSVDDAKLRRAGLDYHDRAALHVHP 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------IIFGRER 129
           +L  A                   + L P       +    S + V       ++FG E 
Sbjct: 62  DLDAA------------------WTALRPDRVFAFSSSATRSYETVSYRPGDVLMFGPES 103

Query: 130 WGLTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            GL  E +  ++ +  +  P+ P   SLN++ +  + V+E       +  
Sbjct: 104 VGLPPELLE-ADYVTPLRIPMLPGNRSLNLANSAAIAVYEAWRQQGFAMP 152


>gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 251

 Score = 63.2 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 12/175 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           ++    + + S K  ++IL   +   N+G + R    F    + +   R    +E    S
Sbjct: 89  LSDLIERSKKSLKPLLVILDGLEDPHNLGAIIRNCVAFGADGVIIPKWRAAGVNETVSKS 148

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SA A   I S+    N  +AI  L           N+F  V A  E    + E+I     
Sbjct: 149 SAGAVEHI-SISRVENTNQAIGLL---------KENSFWIVGA--ENGGRILEKIDLPFP 196

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + +I G E +GL +     S+ +IS P   +  SLN S A  ++++E  +   +S
Sbjct: 197 LAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCASAVILYEIAKKRKIS 251


>gi|306819661|ref|ZP_07453324.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552306|gb|EFM40234.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 154

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 34/168 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-----ANADCVIDSV 71
           I+L +P++ +N G + R       T L ++ P      EK    +     ++AD +    
Sbjct: 3   IVLFEPEIPQNTGNIIRTCVCTG-TTLHMIRPFGFSMDEKQIKRAGMDYISHADII---- 57

Query: 72  RVFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             +   +E           + TT                A      +   +N  +IFG E
Sbjct: 58  -YYDCFEEYFEKYDKDDMFFFTT---------------KAEKSYSDVKYTKNSHLIFGPE 101

Query: 129 RWGLTNEEIALSNAI--ISFPV--NPLFPSLNISQAVLLMVWECMENS 172
             GL  E+I   N    +  P+  N    SLN+S +V + ++E +  S
Sbjct: 102 SRGLP-EKIRKINIQNDVRIPMKANEYVRSLNLSNSVAIGLFEALRQS 148


>gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
 gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
          Length = 270

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 11/160 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A G  ++L + Q   N+G + R      L  + L        + K   S+        S+
Sbjct: 120 AGGKYLVLDELQDPGNLGTMIRTADAVGLDGVVLSGNCVDLYNPKTVRSAVG------SM 173

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                  E   D   +  T    +   ++  A  +    + +  F G    ++ G E  G
Sbjct: 174 PRVDIFVE--KDFEAV--TEMLGKKGIRTAAAVIDGGTEIKQFDF-GGGCAVVIGNEGRG 228

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+ E + + +  ++  +     SLN + A  + +WE    
Sbjct: 229 LSQEHVEMCSDRVTIKMYGHIDSLNAATAATIFLWEMTRR 268


>gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
 gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
          Length = 255

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 103 VMILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTN 162

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  ++  T A N  +++ +               +  ++ I+ G E  G+
Sbjct: 163 LSKTIDELKDNGFWVAGTAANNATDYRDL--------------QADMSLAIVIGSEGQGM 208

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +       +  I  P+     SLN S A  LM++E   
Sbjct: 209 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR 246


>gi|241895544|ref|ZP_04782840.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871122|gb|EER74873.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 171

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL-TQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73
           I+L +P +  N G +AR        T+L L+ P      +K    +       D+V   V
Sbjct: 6   IVLFEPLMPANTGNIART--ATGTNTKLDLIEPLGFKLDDKHVKRA--GLDYWDNVDITV 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL          +  T ++ +    +    + +    +   +  +   +FG+E  GL 
Sbjct: 62  HKNLP--------AFMATLKDTDELFLISKFAKKSYHQADYTNTDHDYYFLFGKETTGLP 113

Query: 134 NEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
              +    +  +  P N     SLN+S    ++++E +      +     E + 
Sbjct: 114 EPFMKEHPDQALRIPQNDEHIRSLNLSNTAAIIIYEVLRQQSFPNLDLTHEYDY 167


>gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 441

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 13/171 (7%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-S 60
           +P   ++     GPV++L       N+G + R+   F      +V  R+        + +
Sbjct: 282 SPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACC-VIVQDRNAPEESGTMAKA 340

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A   +  +RV +           I  T A  +     V+        L+      + 
Sbjct: 341 ASGALDRLPMLRVVN-----------IARTLAALKAADLWVVGLDAEGAPLSGPALGKRR 389

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           V ++ G E  GL        + I+S  +     SLN+S A  + ++E   N
Sbjct: 390 VALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440


>gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 245

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         L +   R    ++    +S  A   +   RV +  
Sbjct: 97  ILDELEDPHNLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLA 156

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      ++  T A  +++++S+                   + ++ G E  G++ 
Sbjct: 157 RTIDELKERGVWVAGTDASAQDDYRSL--------------DGTMPLALVIGSEGKGISR 202

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +   + +   P+     SLN S A  L+++E         E
Sbjct: 203 LVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 245


>gi|300721214|ref|YP_003710484.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627701|emb|CBJ88227.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 167

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    QL L+ P      +K    +        +++   +
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGC-QLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +         +  +       L  K      N     G    ++FG E  GL +  
Sbjct: 63  YNAFLESEGLSSVNSQSHSGARLFALTTKGTPAHSNVSYRDGDY--LMFGPETRGLPSYV 120

Query: 137 IALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        I  P+     S+N+S  V ++V+E    
Sbjct: 121 LDNMPPEQKIRIPMLSDSRSMNLSNTVAVVVFEAWRQ 157


>gi|258545723|ref|ZP_05705957.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis
           ATCC 15826]
 gi|258519040|gb|EEV87899.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis
           ATCC 15826]
          Length = 157

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 17/163 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  PQ+  N G + R   N     L L++P      ++    +      +D       
Sbjct: 4   IALYQPQIAPNTGNIIRLCANTG-AVLHLIHPLGFAWDDRRLRRAG-----LDYAE---- 53

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT--- 133
             +      +   T      N  ++    +    L +   S ++V ++FG E  GL    
Sbjct: 54  FADIRHHDDWAAFTADIAGRNIWALTT--KGTRSLYDATISAEDV-LLFGSETAGLPPFI 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + E+  +  I   P+ P   SLN+S AV ++++E +  ++ + 
Sbjct: 111 HAELENTQKI-RLPMRPTSRSLNLSNAVAVVLYEAIRQNLRAK 152


>gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
           denitrificans ATCC 33394]
 gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
           denitrificans ATCC 33394]
          Length = 248

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 61/181 (33%), Gaps = 23/181 (12%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59
           +   +  + + P  +LV        N+G   R      +    ++ P+D     +     
Sbjct: 84  HLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSK 141

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +  A   +  + V +    L+E      ++  T      +      P            
Sbjct: 142 VACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGDADLFHYDIP------------ 189

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             ++V  + G E  G+        +A++S P+     S+NIS +  +++ E     I + 
Sbjct: 190 --ESVAWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQRITAQ 247

Query: 177 E 177
           +
Sbjct: 248 Q 248


>gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
 gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
          Length = 271

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S   P +++L       N+G   R      +    +V PRD     +  A+  ++
Sbjct: 110 PALLESLDCPFLLVLDGVTDPHNLGACLRTADAAGVHA-VIV-PRDRSAKLNATAKKVAS 167

Query: 63  NADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A     +I+   +   L+       +I  T               EA   L +   +G 
Sbjct: 168 GAAENVPLINVTNLARTLRVLQEHNVWIVGTAG-------------EADHDLFQSKMTG- 213

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    +  
Sbjct: 214 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRGLKK 270


>gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
 gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
          Length = 231

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+  V     WP+ + R+   SA       +V+    + +A+ 
Sbjct: 30  PHNVSAIIRTADAVGVHQVHAV-----WPTSRMRTLVSSAAGSNSWVNVKTHRTISDAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T  +++            A+   E +   +   ++ G+E+ G+T E +AL++ 
Sbjct: 84  -------THLKDQGMQILATHLSARAVDFRE-VDYTRPTCVLLGQEKTGITEEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I  P+  +  SLN+S A  L+++E       + 
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQRHNAG 169


>gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
 gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
          Length = 262

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 17/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L     G  ++L   Q   N+G + R+     + +     P   +  S K   S+  
Sbjct: 104 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  +  
Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176
           +FG E  G++      +   ++ P      SLN++ A  + ++E C +   + +
Sbjct: 209 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRALRA 262


>gi|15673131|ref|NP_267305.1| hypothetical protein L161988 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491644|ref|YP_003353624.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|12724112|gb|AAK05247.1|AE006347_5 hypothetical protein L161988 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375362|gb|ADA64875.1| RNA methyltransferase, TrmH family [Lactococcus lactis subsp.
           lactis KF147]
 gi|326406695|gb|ADZ63766.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 169

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 15/160 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           I L +P++  N G +AR     N T L L+ P     S+K    +       D V +   
Sbjct: 4   IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRA--GLDYWDKVNIVYH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL + +  ++        +      V    E      +     ++   +FGRE  GL  
Sbjct: 61  KNLDDFMNSIN--------DGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPE 112

Query: 135 EEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           E +    +  I  P+N     SLN+S    ++V+E ++  
Sbjct: 113 EFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152


>gi|226229043|ref|YP_002763149.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226092234|dbj|BAH40679.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 165

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 22/171 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           ++LV P++  N G   R       T L L+ P      E+    +       + V V   
Sbjct: 5   VVLVHPEIHWNTGNAGRTCLATGAT-LHLIEPLGFSLGEREVRRA--GLDYWEHVDVRVW 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +   +  +  L                  + K   +  +  +    ++ +IFGRE  G
Sbjct: 62  PDWDTFEAQLPTL------------GEPYFFSTKATQLFWDAPLGEPDHIVLIFGRETAG 109

Query: 132 LTNEEIAL-SNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           L        ++ +++ P  +P   SLN+S +V + ++E +      S  + 
Sbjct: 110 LPEPVRTRWAHRMVAMPITSPHVRSLNLSTSVAVAIYERLRQQHRRSPGSP 160


>gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC
           29413]
          Length = 327

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 25/177 (14%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q ++     +I+        N+G + R         L +   R    +      +A A  
Sbjct: 159 QAKSVTDPVIIVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGA-- 216

Query: 67  VIDS---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +++    RV  NL  A+ DL     +IY T A       +V                  
Sbjct: 217 -LENFPVARVV-NLSRALEDLKEAGFWIYGTAAGGSEPLHTVSFR--------------G 260

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  GL+       + ++S P+    PSLN S A  + ++E      +++
Sbjct: 261 PIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMALYEIFRQRSLNT 317


>gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 247

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R+   F +  + +   R    +     +SA A   +   +V SN+
Sbjct: 100 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKV-SNI 158

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              I  L     +I  T                 A    E +     + I+ G E  G++
Sbjct: 159 NNTIRGLKERGLWIVGT--------------DVNAGKSFEELDYDFPLAIVIGSEGKGVS 204

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +   + ++  P+     SLN S A  +++++ 
Sbjct: 205 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239


>gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 247

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R+   F +  + +   R    +     +SA A   +   +V SN+
Sbjct: 100 ILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKV-SNI 158

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              I  L     +I  T                 A    E +     + I+ G E  G++
Sbjct: 159 NNTIRGLKERGLWIVGT--------------DVNAGKSFEELDYDFPLAIVIGSEGKGVS 204

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +   + ++  P+     SLN S A  +++++ 
Sbjct: 205 KLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239


>gi|227432354|ref|ZP_03914346.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351875|gb|EEJ42109.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 170

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 29/176 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5   IVLFEPLMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRA--GLDYWDHVKLVK 60

Query: 75  ----SNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                +  + +A+   +Y  +   N++  +                 +  +   +FG+E 
Sbjct: 61  HPGLPDFLDTLAETDNLYLVSKFANQDYTQP------------NYAQNDTDNYFLFGKET 108

Query: 130 WGLTNEEIALSN---AIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            GL   E+ +       I  P +     SLN+S  V ++++E +     S+ +   
Sbjct: 109 TGLP--EVFMRQNPEKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQQSFSNLETTH 162


>gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC61]
 gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           C56-T3]
 gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC52]
 gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC61]
 gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           C56-T3]
 gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC52]
          Length = 246

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         L +   R    ++    +S  A   +   RV +  
Sbjct: 98  ILDELEDPHNLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLA 157

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      ++  T A  +++++S+                   + ++ G E  G++ 
Sbjct: 158 RTIDELKERGVWVAGTDASAQDDYRSL--------------DGTMPLALVIGSEGKGISR 203

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +   + +   P+     SLN S A  L+++E         E
Sbjct: 204 LVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 246


>gi|1022801|gb|AAA79704.1| OBP33pep [Arabidopsis thaliana]
          Length = 210

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 33/149 (22%)

Query: 28  IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI------ 81
           +G +AR+   F +T+L LV    G     A  S  +A  +    R F +L EA       
Sbjct: 7   VGTLARSATAFGVTELILV----GRRDFNAFGSHGSASHI--RFRHFHSLIEARNYLKEE 60

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            D                  +   + A  +NE  F  +N   + G E  GL+ +E  + +
Sbjct: 61  KDCDICG-------------VEIADGASAVNEHPFK-RNTAFLLGNEGSGLSAKEYEICD 106

Query: 142 AIISFPVNPLFP----SLNISQAVLLMVW 166
             +  P    +     SLN++ A  +++ 
Sbjct: 107 FFVYIP---QYGCGTASLNVTVAASIVLH 132


>gi|116617771|ref|YP_818142.1| rRNA methylase (SpoU class) [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096618|gb|ABJ61769.1| Predicted rRNA methylase (SpoU class) [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 170

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 29/176 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5   IVLFEPLMPANTGNIART--TAGTDAVLHLIEPLGFELDDKHVKRA--GLDYWDHVKLVK 60

Query: 75  ----SNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                +  + +A+   +Y  +   N++  +                 +  +   +FG+E 
Sbjct: 61  HPSLPDFLDTLAETDNLYLVSKFANQDYTQP------------NYAQNDTDNYFLFGKET 108

Query: 130 WGLTNEEIALSN---AIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            GL   E+ +       I  P +     SLN+S  V ++++E +     S+ +   
Sbjct: 109 TGLP--EVFMRQNPEKAIRIPQDDSHVRSLNLSNTVAIVLYEALRQQSFSNLETTH 162


>gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 281

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 11/177 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++ ++    V +L + +   N G V R         + L +      + K+  +S  + 
Sbjct: 114 QEILDARPTLVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSL 173

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGI 123
             +        + +A+  L        R+            A  + +E      G     
Sbjct: 174 FHLPVAVGVP-VDQAVQGL--------RDAGVRILAADGAGADDLDDELDAGTMGTPTAW 224

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           IFG E WGL  E  AL++A++  P++    SLN++ A  + ++            + 
Sbjct: 225 IFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRPRRAPDA 281


>gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
 gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
          Length = 277

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 2   TPYAPQLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           T   P    SA G    I++   Q   N+G + R      +    L        S +A  
Sbjct: 105 TIAMPASTPSAPGDASLIVVDGVQDPGNLGSLLRTAAAAGIRHALLGEGCAQAWSPRALR 164

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFS 117
           +   A  V+        ++E       +    AR  +     LA   +E A  L E    
Sbjct: 165 AGMGAQFVVR-------IEE---GCELL----ARLESYPGLCLATALREDAHPLYELDLR 210

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G  V  +FG E  GL+   +A ++  +  P+     SLN++ A  + ++E    
Sbjct: 211 G-PVAWLFGAEGQGLSPALLARADGCVIIPMTAGIESLNVAAAAAVCLFEQARQ 263


>gi|148377354|ref|YP_001256230.1| rRNA methylase [Mycoplasma agalactiae PG2]
 gi|148291400|emb|CAL58784.1| rRNA methylase [Mycoplasma agalactiae PG2]
          Length = 243

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 16/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-F 74
           V+ L + Q   N+G + R   +F       V     + ++K   SS  A   ++ V   +
Sbjct: 98  VVFLDNVQDPGNVGTIIRVAKSFGFDT---VVSNVNFYNDKVIRSSQGALFTVNLVNYNY 154

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLT 133
            NL   +             +N FK      + + V  E++ F      I+FG E  G++
Sbjct: 155 DNLTNILLKY---------KQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGIS 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +++ +I  P+N  F SLN++    ++++E  + 
Sbjct: 206 SALADIADMLIYVPIN--FESLNVAICAGIVLYEANKA 241


>gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
           ATCC 23134]
 gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
           ATCC 23134]
          Length = 246

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           PQL    K P++ IL       N G +AR      +  + + +      S  A  +S+ A
Sbjct: 88  PQLYEEGKTPLVLILDRLTDVRNFGAIARTAECAGIHAIVIPSRGSAQVSSDAMKTSSGA 147

Query: 65  DCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +   R  +NL++ I       L  +  T   +   +                     
Sbjct: 148 LNYLPVCR-EANLEKTIEFLQESGLQIVACTEKTSETIYAPDYTV--------------- 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              I+ G E  G++   I  ++ +   P+     SLN+S A  ++V+E +   
Sbjct: 192 PTAIVMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVYEAVRQR 244


>gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
 gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides DSM 266]
          Length = 252

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           IL   +   NIG + R         + L+  +    +     +SA A   +  +RV    
Sbjct: 107 ILQGLEDPHNIGAIIRTAEAVAADAVLLIEGKGSPVNATVHKASAGA---LSHMRVCKVK 163

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L   +  LH         R     ++A    A +    I   + + I+ G E  GL  E
Sbjct: 164 SLVRCLEFLH--------ERKFL--IIAADMDAEINYTDIDLTKALAIVLGAEGSGLAPE 213

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +   +  +  P+     SLN+S    ++++E M   + 
Sbjct: 214 AVKFCDHTVRIPMAGCVESLNVSVTAGVLLYEAMRQRLA 252


>gi|254419188|ref|ZP_05032912.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185365|gb|EDX80341.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 149

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 13/154 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L  P + +N+G   R    F + +L +V P      ++A   +A     +  +   ++  
Sbjct: 5   LFQPDIPQNVGACIRLSACFGV-ELHVVEPTGFRFDDRAMKRAALDYGPLSHMTRHADW- 62

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A            R+R   + +L     A  L++ +F   +  ++FG+E  G  +   A
Sbjct: 63  DAFQ----------RDRPAGRLILFTTRGATPLSDFVFHPDDT-LLFGKETSGAPDYVHA 111

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +A +  P+ P   SLN+S    + +WE +  +
Sbjct: 112 AVDARVVIPLRPEARSLNLSVTAGIALWEGLRQT 145


>gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 254

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 21/166 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG  +I  + Q   N+G + R    F ++ +  +N      + K   +S  +        
Sbjct: 105 KGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDVFNPKVLRASMGS-------- 156

Query: 73  VFSNLKEAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                   I  +  I AT+    + +     V A    A  L         V  + G E 
Sbjct: 157 --------IFHIPVIAATSQILLKLKQRGIKVFATYLKAQKLVHECNISDKVAFVLGNEA 208

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G++   + L +  +  P+     SLN+S A  + ++E     ++ 
Sbjct: 209 KGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQRLIK 252


>gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
 gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
          Length = 273

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 16/185 (8%)

Query: 6   PQLQNSAK-----GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P L  +AK       V++L   Q   N+G + R+        + +   R    +     +
Sbjct: 98  PDLLEAAKASGRAPLVVVLDGIQDPHNLGAIIRSAHALGAHGIVIGKDRAVQVTGVVAKA 157

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SA A       RV  N+  A+ +L       A    + K  L        L         
Sbjct: 158 SAGAVEHCPIARVV-NISRALEELKEAGLWVAAADTHSKEPL----WGARL------DGP 206

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + ++ G E  G+    +   +  +  P+     SLN S +  ++++E       S     
Sbjct: 207 LALVVGAEGAGVREGVLKHCDFRLGIPMVGQVGSLNASVSAAVLLYEVARQRGGSRPSGG 266

Query: 181 KEQNT 185
           +  + 
Sbjct: 267 RRGDQ 271


>gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87]
 gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87]
          Length = 268

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 4   YAPQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
              +L  S   P+I LV   P+   NIG + R     N+  + + NP+    +     SS
Sbjct: 108 ALQKLNFSHNNPLI-LVAEAPEKPGNIGALLRTADAANVDAVLIANPKTDLYNPNIIRSS 166

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS----VLAPKEAAIVLNERIFS 117
                      VF+N             TT+      +     + A    A  +  +I  
Sbjct: 167 VG--------CVFTN--------KIAIGTTSEIIKFLQHKNIAIYAAALQASEIYTKIDF 210

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +   I+ G E  GL  E    +   I  P+N    S+N+S A  ++++E     
Sbjct: 211 TKASAIVVGTEATGLNQEWREAATQNIIIPMNGAIDSMNVSVAAGILIFEAKRQR 265


>gi|126665731|ref|ZP_01736712.1| predicted rRNA methylase [Marinobacter sp. ELB17]
 gi|126629665|gb|EBA00282.1| predicted rRNA methylase [Marinobacter sp. ELB17]
          Length = 154

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++L +P++  N G + R   N    +L L+ P      +K    +       +    +V 
Sbjct: 4   VVLYEPEIPPNTGNIIRLCANTGC-KLHLIEPLGFTLEDKRMRRA--GLDYSEYASVKVH 60

Query: 75  SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +    +       ++  T +  + +  V                 +   ++FG E  GL
Sbjct: 61  KSYPAFLHSEQPQRLFGLTTKGSHYYHEV--------------SYQEGDYLMFGPETRGL 106

Query: 133 T---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                + +   + +   P+     SLN+S    L+V+E    
Sbjct: 107 PAPVRDALPDGHRL-RVPMCAHSRSLNLSNTAALVVYEAWRQ 147


>gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
 gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
          Length = 378

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 11/162 (6%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G +AR+        L L   R    +      +A A   +   RV  NL  A+  L
Sbjct: 78  PHNLGAIARSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVV-NLNRALDSL 136

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +  ++ +    E ++ L +    G  V I+ G E  GL        + ++
Sbjct: 137 ---------KQEGYRVIGLASEGSVSLEQADLEGPLV-IVTGSEADGLAMLTRKHCDQLV 186

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           S P+    PSLN S A  L+++E      +   K  +     
Sbjct: 187 SIPLRGATPSLNASVATALLLYEVARRGWMKGLKGGQPAPRL 228


>gi|167009227|ref|ZP_02274158.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 161

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 22/164 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +        I L +P++  N G + R   N    +L L+    G+  E  +   A  D  
Sbjct: 1   MVKGLNMISIALYEPEIPPNTGNIIRLCANVG-AKLHLIE-LFGFKLEDKQLRRAGLDYH 58

Query: 68  -IDSVRVFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               ++++ N  E      D   I+A T + +  +  V    +                +
Sbjct: 59  EFADLKIYKNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------IL 103

Query: 124 IFGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E  GL  + + L     +  P++    SLN+S +V ++++
Sbjct: 104 LFGPETRGLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 147


>gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07]
 gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07]
          Length = 248

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +     N+G + R         + +   R    +     +SA A   +   +V + 
Sbjct: 100 IILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTN- 158

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                     I  T  R +     + A         ++  +G  +G++ G E +G++   
Sbjct: 159 ----------IVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGFGISRLV 207

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + I+  P+     SLN S A  ++++E     +  S
Sbjct: 208 KQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLGKS 247


>gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-23m63]
          Length = 245

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +     N+G + R         + +   R    +     +SA A   +   +V + 
Sbjct: 97  IILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTN- 155

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                     I  T  R +     + A         ++  +G  +G++ G E +G++   
Sbjct: 156 ----------IVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGFGISRLV 204

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + I+  P+     SLN S A  ++++E     +  S
Sbjct: 205 KQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQRLGKS 244


>gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 308

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 7/172 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L   +   N G V R         + L +      + K+  +S  + 
Sbjct: 137 EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKSVRASVGSL 196

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        + +A+A L               +  A  +      ++   G     +F
Sbjct: 197 FHLPVAVGVP-VDQAVAGLKDA------GVRILAADGAGDDDLDDELDKGTMGGPTAWVF 249

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E WGL  E  AL++A++  P++    SLN++ A  + ++        S  
Sbjct: 250 GNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRASGG 301


>gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 260

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 19/173 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
           P+L     G  ++L   Q   N+G + R+     +  L +  P    P + K   ++  A
Sbjct: 105 PELP-PRPGLRLVLDAIQDPGNVGTLLRSAAAAGVG-LVMCAPGTVDPFNPKVARAAMGA 162

Query: 65  DCVID-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             ++   V  +  ++  +       A +A  +  +                +   Q   +
Sbjct: 163 HFLVPLRVSPWETIRAELQSYTVYAADSAGQQPYY---------------AVDWRQPAAL 207

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I G E  GL+    AL++  I+ P++    SLN   A  ++++E +    V+ 
Sbjct: 208 IVGNEAHGLSEPARALAHQTITIPMSGSIESLNAGVAGSIILFEALRQQTVAH 260


>gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
           AFC27]
 gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
           AFC27]
          Length = 259

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 36/167 (21%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           Q   N+G   R      +    +V P+D     +  AR  ++ A   I  VRV       
Sbjct: 115 QDPHNLGACLRTAEAAGVHG--VVTPKDRAAGLTAVARKVASGAAERIPLVRVT------ 166

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----------QNVGIIFGRER 129
                          N  + + A +E  + L   +  G             +G++ G E 
Sbjct: 167 ---------------NLARVMRALRERGLWLVGTVVGGSHNSLYETDLQGPLGLVLGAED 211

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GL        + ++  P+     SLN+S A  + ++E      +  
Sbjct: 212 RGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRGLLP 258


>gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium
           erythraeum IMS101]
          Length = 288

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 25/158 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS---VRVFSNLKEAI 81
             N+G + R      +  L +   R    +      +A A   +++    RV  NL  A+
Sbjct: 145 PHNLGAIIRTGEALGIQGLVIPQRRAVGITSTVTKVAAGA---LENFPVARVI-NLNSAL 200

Query: 82  ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +L     +IY T A++      +   K    ++           ++ G E  GL+    
Sbjct: 201 EELKKEGFWIYGTVAKDGE---PIHTVKFTGAIV-----------LVVGSEGEGLSLLIQ 246

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +A++S P++   PSLN+S A  + ++E        
Sbjct: 247 KNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQHWSK 284


>gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 251

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R   +     + +   R    ++    +S  A   +  VRV   
Sbjct: 102 IILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNM 161

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +I+ T A+  ++++++                   + I+ G E +G++
Sbjct: 162 VRTMEELQKRGLWIFGTDAKGSSDYRTMDV--------------DMPLAIVIGSEGFGMS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 208 CLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 244


>gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
 gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
          Length = 249

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L + +   N+G + R      +  + +   R    ++    +S  A   +  VRV + 
Sbjct: 99  IVLDEVEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNL 158

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              +++      +   T A+   +++                     + ++ G E  GL+
Sbjct: 159 ARTMEDLKKRGLWFIGTDAKGSEDYRG--------------AAYDMPIALVIGSEGKGLS 204

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 205 RLVREKCDFLVRIPMVGQVTSLNASVATSLLMYEAYR 241


>gi|242310580|ref|ZP_04809735.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522978|gb|EEQ62844.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 158

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 21/169 (12%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++ +N G + R     N   + L L+ P     ++K    +         + V+
Sbjct: 6   IVLHQPRIPQNTGNIGRLCFASN---SILHLIYPLGFHLTQKELKRA--GMDYWQHLEVY 60

Query: 75  S--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+            ++   N     L  K      N  +  G    + FGRE  GL
Sbjct: 61  EWENLESF---------MSSSLLNLPHFYLTTKTQKPYYNANLSKGAY--LHFGREDAGL 109

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             + + A      + P+     SLN++ +V ++++E +        ++ 
Sbjct: 110 DTKILQAKQQDCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPLQDA 158


>gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88]
 gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88]
          Length = 245

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 19/163 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           ++IL + Q   N G + R    F +  + +   R    +     SS  A   +   +V  
Sbjct: 96  ILILDEIQDPHNFGAIIRTAEVFGVDGIIIPKRRSVGITPIVYKSSVGAVEHVKIAKVNN 155

Query: 74  FSNLKEAIADLH-FIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++  + + + + +IY    A +R  +   L                  + ++ G E  G
Sbjct: 156 INSTIDFLKENNIWIYGADMATDRYIYSENL---------------KGPIALVVGSEGKG 200

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           ++       + ++  P++    SLN S A  ++++E     + 
Sbjct: 201 ISKLTKEKCDILVKIPMSGQINSLNASVAGGIVMYEISRQRLE 243


>gi|311111742|ref|YP_003982964.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310943236|gb|ADP39530.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 162

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 29/166 (17%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKEA 80
           P++  N G   R        +L LV P  G+  E A    A  D   +  V V   L++A
Sbjct: 16  PEIPGNTGNAIRLAAVTG-AELHLVEPL-GFNFEDAHLRRAGLDYHDLAVVTVHKTLQDA 73

Query: 81  IADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              +     F + TTA                              ++FG E  GL   +
Sbjct: 74  WKAMMPARVFAFTTTAATSYADLEYRD----------------GDVLMFGPESVGLP-AD 116

Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +   +  I+     P+ P   SLN++ +  + ++E       +  K
Sbjct: 117 VQQ-DEHITERVKIPMIPGRRSLNLANSASIAIFEAWRQHGFTGGK 161


>gi|225432460|ref|XP_002278797.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147777374|emb|CAN73835.1| hypothetical protein VITISV_043470 [Vitis vinifera]
 gi|297736948|emb|CBI26149.3| unnamed protein product [Vitis vinifera]
          Length = 217

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 32/159 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     N+G +AR+     +++L LV  R  + S  +  S+++        R F +
Sbjct: 7   VVVHNIAKRHNVGTLARSASALGVSELILVG-RRDFNSFGSHGSTSHLRF-----RHFHS 60

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L +A       D                  +   + A+ +N+  F  ++   + G E  G
Sbjct: 61  LLDARHFLKEKDCDICG-------------VEITDNAVAVNQHPFK-RSTAFLLGNEGTG 106

Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166
           L+ +E  + +  +  P    +     SLN++ A  +++ 
Sbjct: 107 LSVKECEICDFFVYIP---QYGGGTASLNVTVAASIVLH 142


>gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum
           CFBP2957]
 gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum CFBP2957]
          Length = 263

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 17/173 (9%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +   +IL   Q   N+G + R      +  + +        S K   ++  A   
Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166

Query: 68  IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++ V      +   A LH  + AT++  R+    V                G+ VG +FG
Sbjct: 167 LNIVEHC-TFESMHARLHVPLLATSSHARHAVFDVPL--------------GKPVGWVFG 211

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            E  G++ + +++    IS P      SLN++ A  + ++E +    V   + 
Sbjct: 212 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQRTVKGPRG 263


>gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
 gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
          Length = 232

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 84  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTAAVAKASTGAIEYIPVARVTNLS 143

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +      +I  T AR + +++               +     +G++ G E  G++ 
Sbjct: 144 RTIDDLKERGLWIAGTDARGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 189

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 190 IIGEKCDFLINLPMVGKVTSLNASVAASLLMYEVYR 225


>gi|20808975|ref|NP_624146.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20517641|gb|AAM25750.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 210

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 72/172 (41%), Gaps = 13/172 (7%)

Query: 7   QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSANA 64
           ++    +  +++ VD      N   + R      + ++      + G    +A S +AN 
Sbjct: 18  EVLQKRQKDLVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVSMAANR 77

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I+  RV+   ++AI ++        + R N + V+   + +      I   +   ++
Sbjct: 78  WLFIE--RVYDR-EKAIKEI--------KERENLQVVVTWLDESSKDFREINYTKPTLLV 126

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G E  G++ + + L++  I  P+  +  SLN+S A  ++++E +   +   
Sbjct: 127 VGNELKGVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQRLDKG 178


>gi|332532739|ref|ZP_08408613.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037766|gb|EGI74216.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 228

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 20/156 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIA 82
            N+  + R+        +  V     WP ++   +   S  +   ++   +  N+ +A+ 
Sbjct: 31  HNLSAIVRSADAVGCHHVHAV-----WPEKQKWLTNNTSGGSKNWLE-THLHRNIDDAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                  T  R RN    +LA    E A+   E +   +   II G+E+ G++ + +  +
Sbjct: 84  -------TAMRERNPEIQILATHLSEDAVDFRE-VDYTKPTAIIVGQEKTGISEKALEYA 135

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  I  P+  +  SLN+S A  L+++E      ++ 
Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQRQRELAG 171


>gi|258406290|ref|YP_003199032.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
           DSM 5692]
 gi|257798517|gb|ACV69454.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
           DSM 5692]
          Length = 202

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R+   F +  + L+   + +P+   R+S++    V    R      EA+A  
Sbjct: 40  PHNVAAIMRSCDAFGVPDVHLLYTSEAFPALGRRASASARKWV---GRHHHTSSEALAG- 95

Query: 85  HFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           H         R++   +L+     +A  L E  F+     I+ G E  G+     +  + 
Sbjct: 96  HL--------RDHGMRILSTSCSPSARPLPEWEFT-SPTAIVLGNEHRGVDPALRSHIDG 146

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
            +  P+  +  S N+S A  ++++E           +    +      EL +     
Sbjct: 147 ELFIPMQGMVQSFNVSVAAAIILYEAWRQRNRHGLYDHPSYSP----EELETRYQQW 199


>gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
 gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
          Length = 284

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            L +    P I+L+       N+G + R+   F    +  V       +     +++ A 
Sbjct: 128 ALGDGPMPPRIVLLDRVTDPHNVGAILRSAEVFGARAVVAVQRHSAPETGALAKTASGAL 187

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VG 122
                +RV  NL +A+  L          +     VL     A +  E    G+    V 
Sbjct: 188 ERQPYLRV-RNLADAMEAL----------KGMGYLVLGLDGEADLTVEAAVEGKRDRPVA 236

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +     N ++       F SLN+S A  + ++
Sbjct: 237 LVMGAEGPGLREKTRETCNELVKIDAAAGFGSLNVSNAAAVALY 280


>gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 261

 Score = 63.2 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 24/179 (13%)

Query: 5   APQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           APQ Q +        I+L   Q   N+G + R     N+  L +          K   +S
Sbjct: 97  APQSQTNFLKITTLGIVLDKIQDPGNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRAS 156

Query: 62  ANADCVIDSVRVFSNLK-EAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           A     +    +  NLK E +      L  + AT   +  N+  +   K           
Sbjct: 157 AGEWFNLHKA-ISENLKNEILKLQSQGLQ-VLATVPNSNINYWEIDLRK----------- 203

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                 I+ G E  G++ + I L++  +  P++    SLN++ +  ++++E      + 
Sbjct: 204 ---PTIIVLGNEGSGISKDLIDLADYSVKIPLSNGVESLNVAVSAAIILYEIQRQRQLE 259


>gi|315186915|gb|EFU20673.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 249

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSSSANADCVI 68
             ++L +     N   V R+     L  + +V       P  G     AR  S +     
Sbjct: 39  ITVVLENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARWLSLH--RYQ 96

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D     S L+E   + + I ATT            P      ++E   +       FG E
Sbjct: 97  DPRVAVSRLRE---EGYRIIATT--------PHRTP----TPVDEFDVTRGKCAFFFGGE 141

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL++  +  ++  ++ P+     SLNIS    +++   ++ 
Sbjct: 142 LPGLSDAVLEAADEYLTIPMYGFVESLNISVTAGIVLHNVVQR 184


>gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Paulinella chromatophora]
 gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Paulinella chromatophora]
          Length = 526

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G + R+        L L   R+   +      +A A   +   RV +   +L + +
Sbjct: 295 PHNLGAIVRSAEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSL-DIL 353

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            D              ++ V    E  + L E   +G  V I+ G E  GL+       +
Sbjct: 354 KD------------KGYRIVGLATEGDVSLTEADLNGPLV-IVTGSEGNGLSLLTRRYCD 400

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSI---VSSEKNVKEQNTPATKGE 191
            +I  P+    PSLN S A  LM++E    +    +  +  V +   P+  G+
Sbjct: 401 QLIRIPLRGATPSLNASVASALMLYEVARRTWMKDLGGQSPVPQMVRPSIAGQ 453


>gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus
           oleovorans Hxd3]
          Length = 256

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 17/164 (10%)

Query: 17  IILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            ILV        N+G +AR      +  L +       P+  A  +SA A   +   R  
Sbjct: 102 FILVADGLTDPHNLGALARTALCAGVHGLIIPKDNAASPTPAAVKASAGALEFLPVARET 161

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             + + +A+ D     A    +    +++        +            ++ G E  G+
Sbjct: 162 NIARVLDALKDAGLWIA--GLDGRGEQTIYDSDLTGPL-----------ALVVGDEGRGI 208

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + I+S P   +  SLN S A  + ++E        +
Sbjct: 209 RRLVGQKCDFILSIPQTDMVHSLNASVAGAVAMYEAFRQRRAKA 252


>gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis
           E264]
          Length = 281

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 16/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L        ++L   Q   N+G + R+     + Q     P   +  S K   S+  
Sbjct: 123 APALPERVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQ-VFCAPGTAYAWSSKVLRSAMG 181

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  V  
Sbjct: 182 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLTG-PVAW 227

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +FG E  G++      +   ++ P      SLN++ A  + ++E          
Sbjct: 228 VFGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA 281


>gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC2047]
          Length = 244

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 20/173 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L+  ++  V++L       N+G   R+     +T   +V P+D     +      ++ A 
Sbjct: 87  LEEVSQPLVLVLDGVTDTHNLGACLRSADAAGVT--AVVVPKDNSADLNSVVSKVASGAA 144

Query: 66  CVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  V+V +NL    +A+ D       TA + ++             L E   +G  V 
Sbjct: 145 ETLPFVKV-TNLARTMKAMQDRGLWITGTAVDESSRP-----------LYEADLTGPRV- 191

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           I+ G E  G+        + ++  P+     SLN+S A  + ++E +   + S
Sbjct: 192 IVMGSEGKGMRRLTQEHCDELVYIPMAGEVSSLNVSVATGVCLFEAVRQRVKS 244


>gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
 gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
          Length = 251

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 23/166 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDS 70
              +++L   Q   N+G   R           +V P+D     +  A   ++ A   +  
Sbjct: 101 NALILVLDGVQDPHNLGACLRVADAAGAH--AVVAPKDRAVGLNATAVKVASGAADTVPY 158

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           + V +NL  A+ ++     ++                    A      +     V  + G
Sbjct: 159 ITV-TNLARALREMQDAGVWVVGAAG--------------EAEKTLYGVDQKVPVAWVLG 203

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GL        + +   P++    SLN+S A  + ++E     
Sbjct: 204 AEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGICLFEARRQR 249


>gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710b]
          Length = 281

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 16/169 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L     G  ++L   Q   N+G + R+     + +     P   +  S K   S+  
Sbjct: 123 APALPARVAGTSVVLDGVQDAGNVGSILRSAAAAGVER-VFCAPGTAYAWSSKVLRSAMG 181

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  +  
Sbjct: 182 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 227

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  G++      +   ++ P      SLN++ A  + ++E     
Sbjct: 228 VFGNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQ 276


>gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
           11300]
 gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
           11300]
          Length = 246

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 17/171 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           +++L       N G + R+        + +   R    S     ++A A   +   +   
Sbjct: 90  IVLLDGITDPRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVVKTAAGATSYLPVAQTKN 149

Query: 74  FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              L +A+  D  +IY                   A     R      V ++ G E  GL
Sbjct: 150 LPRLIDALKEDGVWIYGAAG--------------EAAQDIGRTDLSGKVALVIGAEGEGL 195

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
                   +A++  P      SLN S A  ++++E       +  KN  +Q
Sbjct: 196 RRLVREKCDALVRIPTRGQVQSLNASVAAGILLYEAARARDKNKSKNKGKQ 246


>gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240013]
          Length = 250

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      ++ A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVASGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 175

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V+IL + +   N+G V R    F L  + L       P    + ++  A   ++  +
Sbjct: 18  TPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCGYTPVPPHRDIQKTALGATETVEW-Q 76

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F+   EA+A L     T         S++  +           S + + +IFG E  G+
Sbjct: 77  YFATTTEAVAALQEAGYTVMAVEQAVNSIMLDQFIP-------ASDKPLALIFGNEVSGV 129

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             E + +    I  P + +  SLNIS +  ++VW+  
Sbjct: 130 DAEVMKMVEGCIEIPQSGMKHSLNISVSTGIVVWDIF 166


>gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
 gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri
           A1501]
 gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 251

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L + A+GP ++LV        N+G   R         L ++ P+D     +   R  + 
Sbjct: 88  ELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLNATVRKVAC 145

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  VI  V V +    L++      ++  T               EA   L  +  +G 
Sbjct: 146 GAAEVIPLVAVTNLARTLEKLQQKGLWVVGTAG-------------EAEQSLYAQDLTGP 192

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            V ++ G E  G+        + ++  P+     SLN+S A  + ++E +      +  +
Sbjct: 193 IV-LVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRGRGAATD 251


>gi|46580760|ref|YP_011568.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450180|gb|AAS96828.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234472|gb|ADP87326.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 196

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   ++L +     N+  + R+   F + Q+ L      +PS   ++S++ A   +D+VR
Sbjct: 22  KDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPSLSGKTSAS-ARKWVDTVR 80

Query: 73  V--FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                +L   + A  H + AT+           +P    +   +     +   II G E 
Sbjct: 81  HQDRDSLMSTLRASGHQVLATS----------CSPVAKPVADYDLT---RPTAIIMGNEH 127

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            G++ E + + +  +  P+  +  S N+S A  +++ E     +V+         +  T 
Sbjct: 128 SGVSQELVDVVDGEVYIPMYGMIQSFNVSVAAAILLSEASRQRVVAG----MYAKSTYTD 183

Query: 190 GELLSFLDYLEI 201
            E  + L     
Sbjct: 184 EEFEARLAQWIE 195


>gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 266

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 18/170 (10%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           +P AP  Q +     ++L D Q   N+G + R      +  + L        S K   + 
Sbjct: 109 SPEAPPAQAAR----VMLEDIQDPGNLGTILRTAAAAGVYDVFLSKGCVDVFSPKVLRAG 164

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A   +  +   ++L   +            +R   + ++   E +  L     +G  V
Sbjct: 165 MGAHFAL-RIHEHADLAGEL------------SRFGGRKLVTHLEGSSSLYGHDLTG-PV 210

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +FG E  G+++  +AL++A I  P+     SLN++ A  + ++E +  
Sbjct: 211 AFVFGNEGAGVSDALLALADARIRIPMPGHAESLNVAMAATVCLFERVRQ 260


>gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 247

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 12/168 (7%)

Query: 6   PQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P +  + + P+I+L+       N G +AR+   F    L + + +    + +A  +SA A
Sbjct: 89  PSVFENGQNPLIVLLDGITDVRNFGAIARSAEVFGAHALVISSKKSAQVNAEAVKTSAGA 148

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +I   R   ++  AI  L                V     AA      +     V ++
Sbjct: 149 LTLIPVCR-EKSMVGAIELLKLS----------GVKVYVSDLAATASIAALDWTIPVALV 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+T    AL++     P      SLN S A  ++++E     
Sbjct: 198 IGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILYEATRQR 245


>gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 259

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      +    +V P+D     +  AR  +  A   +  +RV +
Sbjct: 111 ILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARKVACGAAETVPLIRVTN 168

Query: 76  NLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                        A T R    ++N   V    EA   + +   +G  + ++ G E  G+
Sbjct: 169 ------------LARTMRELQEQHNIWIVGTAGEATSGIYQAKLTGA-IALVMGAEGDGM 215

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + +IS P+     SLN+S A  + ++E +   + + 
Sbjct: 216 RRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAAQ 259


>gi|254423600|ref|ZP_05037318.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196191089|gb|EDX86053.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 213

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 70/183 (38%), Gaps = 20/183 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSE-----KARSSSANADCVIDS--VRVFSNLKE 79
           NIG + R +    + +  +V+P+   P +     + R+ S  +   I    V+ F +   
Sbjct: 38  NIGTIIRNVNALGVEKAYIVDPKKALPDDWQEMREKRALSKTSVSAIKWSFVKRFDSTAA 97

Query: 80  AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            I  L         T+          L  ++ A++          + + FG E  G+++ 
Sbjct: 98  CIDHLEQNRFVSIVTS--------PHLKGRKNAVLDEADYTIYTKLAVWFGNESMGISDL 149

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
            +  S+  +S P+  +  SLN+     ++++E  +      +   + +N    K      
Sbjct: 150 AVEHSDLCVSIPMFGMIESLNLGTTSGIVLYEITKQR-REYQHQYRWRNNRGPKLNNERS 208

Query: 196 LDY 198
           LD+
Sbjct: 209 LDH 211


>gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC
           19707]
 gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC
           19707]
          Length = 274

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 36/167 (21%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           Q   N+G   R      +    +V P+D     +  AR  ++ A   I  VRV       
Sbjct: 130 QDPHNLGACLRTAEAAGVHG--VVTPKDRAAGLTAVARKVASGAAERIPLVRVT------ 181

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-----------QNVGIIFGRER 129
                          N  + + A +E  + L   +  G             +G++ G E 
Sbjct: 182 ---------------NLARVMRALRERGLWLVGTVVGGSHNSLYETDLQGPLGLVLGAED 226

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GL        + ++  P+     SLN+S A  + ++E      +  
Sbjct: 227 RGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRGLLP 273


>gi|315445821|ref|YP_004078700.1| rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
 gi|315264124|gb|ADU00866.1| predicted rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
          Length = 154

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 23/167 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++   P++  N G   R +       L LV P     SE     +      + SV V ++
Sbjct: 4   VLFYSPRIAPNTGNAIRMVAGTGCA-LHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHAD 62

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L  A + L    ++A TA               A      +       ++FG E  GL  
Sbjct: 63  LGAAWSALMPARVFAFTA--------------HAATSFAGVGYEPGDVLMFGPEPTGL-- 106

Query: 135 EEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +E+ L++  I+     P+     SLN+S A  + V+E       +  
Sbjct: 107 DELTLADPHITEQVRIPMLSGRRSLNLSNAAAVAVYEAWRQHGFAGA 153


>gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 284

 Score = 62.8 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 11/156 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VI+L       N+G + R+   F    L          S     +++ A   +  + V  
Sbjct: 138 VIVLDQVTDPHNVGAILRSATAFGADALVTTARHSPQESGVLAKAASGALEHVTQIEVV- 196

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+         +A ++  F+++           E   SG+ + I+ G E  GL  +
Sbjct: 197 NLADAL---------SALSKQGFRTI-GLDSDGPESFEASLSGERIAIVLGAEGKGLRQK 246

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             A  +A+    +     SLN+S A  + ++    +
Sbjct: 247 TQATVDALARLEMPGAIRSLNVSNAAAIALYATRRH 282


>gi|295134598|ref|YP_003585274.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294982613|gb|ADF53078.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 168

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 64/171 (37%), Gaps = 22/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +  N      ++L       NIG + R    F++ ++          S + + +S +   
Sbjct: 9   KFSNKKFPVTLVLDHISGEANIGSIFRLSDAFHVEEIIFCGTEPNLNSNRLKKTSRSTHE 68

Query: 67  VID-------SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +        +  +     EA +    I A      +     L            +   +
Sbjct: 69  YVKFQFSENPTAIIKGKKAEAYS----IIALEITQNSVPIQQL-----------ELKPSE 113

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            V +I G E +G++ + + L ++I+  P+     S+N++QA+ + ++E  +
Sbjct: 114 KVVLIAGHENFGISEDLLRLCDSIVHIPMFGNNSSMNVAQAIGISLYEITK 164


>gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 250

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 15/162 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+  V R+     + ++  V     W  + K R  +A          + +++ +A+  
Sbjct: 30  PHNVSAVLRSCDAVGINRIHGV-----WDQKTKIRKGTAMGSEHWVKTEMHTSIGDAV-- 82

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                  +   + N + ++       V    I   Q   II G+E+ G T E IA+++  
Sbjct: 83  -------SVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEAIAVADKN 135

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           I  P+  +  SLN+S A  ++++E      V+   N  + + 
Sbjct: 136 IVIPMVGMVQSLNVSVAAAVVLYEAQRQREVAGMYNSLQLSE 177


>gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803]
 gi|3915481|sp|P74261|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673
 gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803]
          Length = 274

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 29/171 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV------ 71
           +L   Q   N+G + R      +  + L        S K   SSA +  ++         
Sbjct: 124 VLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSPKVLRSSAGSSLLLPQQQLQSLP 183

Query: 72  ---RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                F         L    AT                 A      I   +   +IFG E
Sbjct: 184 PLLEKFHT-----QGLQL-IAT--------------VPQATQTLWEIDFQRPTIVIFGSE 223

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             GL+   + L+   ++ P  P   SLN++ AV +M++E       +S   
Sbjct: 224 GQGLSAPVLELTTHQVAIPQAPQVESLNVAIAVGVMLYEARRQQWAASTPG 274


>gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 253

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 23/166 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R         L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAV-T 157

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL  A+  L     ++  T               EA + L ++  +G  + II G E  G
Sbjct: 158 NLARALEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKG 203

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +        + ++  P+     SLN+S A  + ++E +    V + 
Sbjct: 204 MRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 249


>gi|317049240|ref|YP_004116888.1| tRNA/rRNA methyltransferase SpoU [Pantoea sp. At-9b]
 gi|316950857|gb|ADU70332.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. At-9b]
          Length = 359

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 14/164 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV 67
           Q  AK  V+ L D     N+G + R+  +F +  L LVN      S  A  ++   A+ V
Sbjct: 207 QAEAKDCVLALEDVSNPHNLGGIMRSCAHFGVKGL-LVNDASLLESGAAVRTAEGGAEHV 265

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                      +AI+   F     A  +  +  V         L +     + V ++ G+
Sbjct: 266 -----------QAISGESFSAGLEAFRKAGYTIVTTSSHEGTPLAKAELPAKMV-LVLGQ 313

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ER GL++      +  +S        SLN+S A  +++ E    
Sbjct: 314 EREGLSDSAFQQGDMSLSIGGTGNVESLNVSVATGILLAEWWRQ 357


>gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 249

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 21/156 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R+   F +  + +  P+           +        +  V    
Sbjct: 102 ILDEITDPHNLGAIIRSAEAFGVHGIII--PK---------RRAVGV-----NATVVKTS 145

Query: 78  KEAIADLHFI----YATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             A+  +          T RN +     ++          E I     V ++ G E  G+
Sbjct: 146 AGAVEHMKIAKVSNINNTIRNLKERGLWIVGTDVNGGKSFEEIDYDFPVALVIGNEGKGV 205

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +   +   + ++  P+     SLN S A  L+V++ 
Sbjct: 206 SKLVLQNCDFVVKIPMKGKINSLNASVAASLLVYQV 241


>gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547]
 gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM
           20547]
          Length = 323

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 10/156 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L       N+G + R+   F    + +   R    +  A  +SA A   +   RV +N
Sbjct: 173 VALDGITDPRNLGAIIRSAAAFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVARV-TN 231

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+ +L        R++  F   L      + L     +   + ++ G E  G++   
Sbjct: 232 LNRALQEL--------RSQGIFVIGLDADGD-VELPGLPLAPDPLVVVVGSEGKGISRLT 282

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + I+S P+     SLN   A  + ++E     
Sbjct: 283 REHCDQIVSIPMTAGNESLNAGTAAAVTLYEIARER 318


>gi|229917708|ref|YP_002886354.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
 gi|229469137|gb|ACQ70909.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
          Length = 254

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 20/148 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N   V R+   F +  L +V  R  +        + +AD  +D V    +++EAI  L
Sbjct: 68  PHNQSAVLRSADAFGVQTLHVVEGRAKFKPNSII--AKSADRWVDVVE-HGSIEEAIDAL 124

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 +YAT                      E +   +   ++FG E  G++   +  +
Sbjct: 125 KESGYQVYATALSEEAIP-------------LEEVDVSKPTVLLFGNEHSGVSETALHKA 171

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +     P+     SLNIS A  + +++ 
Sbjct: 172 DGNFVIPMQGYVQSLNISVAAAISLYDV 199


>gi|89256878|ref|YP_514240.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315257|ref|YP_763980.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503053|ref|YP_001429118.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368153|ref|ZP_04984173.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|254369752|ref|ZP_04985762.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953624|ref|ZP_06558245.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313057|ref|ZP_06803751.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144709|emb|CAJ80040.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130156|gb|ABI83343.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253963|gb|EBA53057.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|156253656|gb|ABU62162.1| RNA methyltransferase, TrmH family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157122711|gb|EDO66840.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 155

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 22/157 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRV 73
             I L +P++  N G + R   N    +L L+    G+  E  +   A  D      +++
Sbjct: 2   ISIALYEPEIPPNTGNIIRLCANVG-AKLHLIE-LFGFKLEDKQLRRAGLDYHEFADLKI 59

Query: 74  FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + N  E      D   I+A T + +  +  V    +                ++FG E  
Sbjct: 60  YKNFAEFYQQNKDKQ-IWACTTKAKQYYHQVDFSCDD--------------ILLFGPETR 104

Query: 131 GLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
           GL  + + L     +  P++    SLN+S +V ++++
Sbjct: 105 GLPADVLELLKQTQLKIPMHKNSRSLNLSNSVAVILY 141


>gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
 gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
          Length = 238

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 13/149 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL D Q   NIG + R    F++ Q+ L N      ++K   S   A+  I+   ++ +L
Sbjct: 100 ILDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHIN--CIYDDL 157

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           K  I+ L          +NN K + +  E    + ++I   + +  I G E  G+  + +
Sbjct: 158 KTVISTL---------KKNNVKIIGSALENGQDI-KQIKISEKMAFIVGNEGNGMNKDIL 207

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              + +   P+N    SLN++ A  +M++
Sbjct: 208 QECDYVGYIPIN-TIESLNVAIAGSIMMY 235


>gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 274

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 34/184 (18%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
             +  SAK   I L   +   N+G + R         + L+       S +   S+  + 
Sbjct: 113 ETITESAKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRSTMGSI 172

Query: 65  ----------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
                     +  +D      N K  I   H   A   R  +    ++            
Sbjct: 173 FSIPLYRFNENAFLDWST---NFKGMIIGAHLQGAVDYRTIDFKGPII------------ 217

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                   ++ G E+ GL+N      + +   P N    SLN++ A  +M++E   + + 
Sbjct: 218 --------LLMGNEQQGLSNALANRCHQLARIPQNGHADSLNLAIATAIMLYEIRRSDLT 269

Query: 175 SSEK 178
              +
Sbjct: 270 LEPR 273


>gi|304312834|ref|YP_003812432.1| hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
 gi|301798567|emb|CBL46797.1| Hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
          Length = 565

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 12/151 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NIG + R   +F ++ +  V       S  A  ++      +        L EA  D 
Sbjct: 427 PHNIGAILRVAAHFGVSSIV-VRDASLARSGAALRTAEGGGEHVR-------LLEA-DDF 477

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             + A     R  F  V         L         V ++ G+E  GL++     S+  I
Sbjct: 478 SRMLAAC--RREGFTVVSTSSHEGTSLFAAPLP-ARVVLLIGQESTGLSSSLQEGSDLKI 534

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           S P      SLN+S A  +++ E   N   +
Sbjct: 535 SIPGTKNVESLNVSVAAGILLAEYWRNHASN 565


>gi|108798157|ref|YP_638354.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119867253|ref|YP_937205.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|126433816|ref|YP_001069507.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|108768576|gb|ABG07298.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119693342|gb|ABL90415.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|126233616|gb|ABN97016.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 179

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 21/173 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++   P++  N G   R +      +L LV P     SE     +      + SV V  +
Sbjct: 4   VMFYSPRIAPNTGNAIRMVAGTGC-ELHLVRPLGFDLSEPKLRRAGLDYHDLASVTVHDD 62

Query: 77  LKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L  A  D      +YA TA               A V    +       ++FG E  GL 
Sbjct: 63  LPAAW-DAVLPASVYAFTA--------------HATVSFADVDYRPGDVLMFGPEPTGLD 107

Query: 134 NEEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            E +A  +  A +  P+     SLN+S A  + V+E       +        +
Sbjct: 108 AETLADPHITAQVRIPMLAGRRSLNLSNAAAVAVYEAWRQHGFAGGDIRPRGD 160


>gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC
           25196]
 gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 249

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 23/178 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
            + ++   P ++LV    Q   N+G   R    F +    ++ P+D     +      ++
Sbjct: 87  DVLDTLAEPALLLVLDGIQDPHNLGACLRVADAFGVH--AVIAPKDRAVGLTAAVHKVAS 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+        +  T A               A      +    
Sbjct: 145 GAADNVPYISVTNLARTLRGLKQRGVTVLGTAA--------------DADTQLGVLQLAG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            +  + G E  G+        + ++S P+     SLN+S +  + ++E          
Sbjct: 191 PIAWVLGSEEKGMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFETHRQRYAPKA 248


>gi|15806040|ref|NP_294741.1| rRNA methylase [Deinococcus radiodurans R1]
 gi|6458745|gb|AAF10591.1|AE001953_5 rRNA methylase [Deinococcus radiodurans R1]
          Length = 265

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 13/170 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P     Q      V++L   +   N+G + R           LV  R   P       ++
Sbjct: 104 PAPRLPQPGDDTVVVVLHGLEKPGNVGAILRTADAAGAAG-VLVLGRGADPYGPNVIRAS 162

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
                        ++  A+          A   N       P   A   +  +     V 
Sbjct: 163 QGAVF--------SVPTAVLGEDAALGWLA-EHNFRTVACTPDAPADYWDTPLT--GRVA 211

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  GL   E   ++  +  P++    SLN++ A  L+++E +   
Sbjct: 212 LLLGTEHAGLP-AEWRAAHQAVRVPMHGQADSLNVATAAALVLYEALRQR 260


>gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 242

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L ++  GP ++LV        N+G   R           ++ P+D     +  A   ++
Sbjct: 82  ELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAH--AVIAPKDRAVGLNATAAKVAS 139

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL   + DL     ++  TT              E A     +    
Sbjct: 140 GAAESVPYITV-TNLARTLRDLKDRGIWLIGTT--------------EDAEQTLYQGDFT 184

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               +I G E  G+        + ++  P+     SLN+S A  + ++E     +V  
Sbjct: 185 GPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLFEARRQRLVKG 242


>gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
           chondrophila WSU 86-1044]
 gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
           chondrophila WSU 86-1044]
          Length = 242

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            +N+G + RA   F +  +     R    +  A  +   A  ++ ++ V SNL E +   
Sbjct: 100 PQNLGAILRAAECFGVDAVIWSKNRGCSLTPSAAKAGVGASELVPTI-VVSNLAETVKKF 158

Query: 85  HFI--YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                +A TA   +    +      A    E+        +I G E  G+      L++ 
Sbjct: 159 QKSGYFAVTAEISDRASPL-----NAFQFPEKTL------LIMGSEGKGIQPLISKLADE 207

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
            +  P++    SLN+SQA  +++
Sbjct: 208 QVYIPMSGKIDSLNVSQATAVLL 230


>gi|163791007|ref|ZP_02185429.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
 gi|159873746|gb|EDP67828.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
          Length = 169

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 24/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I L +PQ+  N G +AR     N T L L+ P      +K    +       + V +   
Sbjct: 5   IALFEPQIPANTGNIARTCAATN-THLHLIEPLGFQTDDKHLKRA--GLDYWNEVHITYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLA---PKEAAIVLNERIFSGQNVGIIFGRERWG 131
            NL   +       A     +N    ++     +  + V    I        +FG+E  G
Sbjct: 62  KNLAAFME-----VA-----KNGQLHLITKFGNRVYSDVDYAAIEEDHY--FLFGKETTG 109

Query: 132 LTNEEIALSNA--IISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           L  EE    +    +  P+N     SLN+S    ++++E +   
Sbjct: 110 LP-EEFMREHEEDCLRIPMNDEHVRSLNLSNTAAILIFEALRQQ 152


>gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 259

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      +    +V P+D     +  AR  +  A   +  +RV +
Sbjct: 111 ILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARKVACGAAETVPLIRVTN 168

Query: 76  NLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                        A T R    ++N   V    EA   + +   +G  + ++ G E  G+
Sbjct: 169 ------------LARTMRELQEQHNIWIVGTAGEATSGIYQAKLTGA-IALVMGAEGDGM 215

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + +IS P+     SLN+S A  + ++E +   + + 
Sbjct: 216 RRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAAQ 259


>gi|294638299|ref|ZP_06716552.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291088552|gb|EFE21113.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 219

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 14/172 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  V R      + Q+  V P  G       S++A ++  + SV+   ++  A+++L
Sbjct: 19  PHNVSAVIRTADAVGVHQVHAVWP--GKSMRTLVSTAAGSNSWV-SVKTHRDIASAVSEL 75

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                         + +     A  V    I   +   I+ G+E+ G++ E + L++  I
Sbjct: 76  ---------KGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLADRDI 126

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
             P+  +  SLN+S A  L+++E             +      +  E    L
Sbjct: 127 IIPMVGMVQSLNVSVASALILYEAQRQR--QQAGMYQHHQPRLSDEEQQRLL 176


>gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
           ATCC 43380]
 gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
           ATCC 43380]
          Length = 246

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLASVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+    +  +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQENNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246


>gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 249

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 15/149 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSA-NADCVIDS 70
           K P+++L       N+G + R+   F    L +V   R   P     + +A  A  ++  
Sbjct: 99  KRPILVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARAASGALEIVPW 156

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           VRV  NL  A+ ++             +  +    EA   + E I     V ++ G E  
Sbjct: 157 VRVV-NLARALDEI---------AEAGYWRIGLDGEADTTIGEAIGQ-SRVALVLGAEGE 205

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           GL +  IA  + I   P++P   SLN+S 
Sbjct: 206 GLRHNSIAHCDIIAKLPISPRMESLNVSN 234


>gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
           chlorophenolicum L-1]
 gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
           chlorophenolicum L-1]
          Length = 246

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSS-SANADCVIDS 70
           K PV++L       N+G + R+   F    L +V   R   P     +  ++ A  ++  
Sbjct: 99  KRPVLVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARSASGALEIVPW 156

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           VRV  NL  A+ ++             +  +    EA   L E I +   V ++ G E  
Sbjct: 157 VRVV-NLARALDEI---------AEAGYWRIGLDGEAEQTLGEAIGT-SRVALVLGAEGE 205

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           GL +  +A  + +   P++P   SLN+S 
Sbjct: 206 GLRHNSMAHCDILAKLPISPRMESLNVSN 234


>gi|297626567|ref|YP_003688330.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922332|emb|CBL56904.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 286

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 15/182 (8%)

Query: 8   LQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
            ++ A+  ++++    +   N G V R    F    + L +      + K   +S  +  
Sbjct: 115 FEDIAEPRLVVICAQVRDPGNAGTVVRCADAFGADAVVLTHGSVDITNPKTVRASVGSIF 174

Query: 65  -DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              +I  V +   ++ A A    + A                +   ++      GQ    
Sbjct: 175 HLPIISGVELTGAIEWAHASGLQVLAADGSG-----------QPVDLMAGAGQLGQPTAW 223

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           + G E WGL   ++ L++ + + P+     SLN+S A  + ++        + E+    +
Sbjct: 224 LMGNEAWGLPRHDLELADRVAAVPMWGAAESLNLSTAAAICLYATASAQRRAPEQQPNPE 283

Query: 184 NT 185
            +
Sbjct: 284 GS 285


>gi|291514391|emb|CBK63601.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 243

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 21/153 (13%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSNLKEAIA 82
            G+N   + R    F + ++  V     + P+       A        VR  ++  EA+A
Sbjct: 64  HGQNAAALIRHCEAFGVQEMHTVETLCPFEPNPDI----ARGTHQWVDVRRHASTGEAVA 119

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      I ATT    +                          ++FG E  G+++E IA
Sbjct: 120 ALKGAGYRIVATTPHREDATPETFDVGR------------GPFALVFGTEHAGISDEVIA 167

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++  +  P+  +  SLN+S +  ++++   E 
Sbjct: 168 SADEFLRIPMCGMVESLNVSASAAILIYTLSER 200


>gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 298

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+L + +   N+G + R      +  + +   R+   +      S  A   +   +V +
Sbjct: 150 IIVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGITSTVYKCSVGAIEHMKIAKV-T 208

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI +L          + +   V     A    + ++       ++ G E  G++  
Sbjct: 209 NINSAIDEL----------KESGLWVYGADIAGEEYSYQVDFNGPCAMVIGSEGRGISKL 258

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +   + ++  P+     SLN S A  +M++E ++  ++ 
Sbjct: 259 TLKKCDKLVKIPMVGKINSLNASVAGGIMMYEILKGRLLK 298


>gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
           proteobacterium HdN1]
 gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
           proteobacterium HdN1]
          Length = 248

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 16/151 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G   R+     +  +     +    S   R  +  A   +  ++V +    L+   
Sbjct: 110 PHNLGACLRSADAAGVHAVITTRDKSAGLSAAVRKVAVGAAETVPFIQVTNLARTLEMVR 169

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               ++Y T               E A  + E    G N+GI+ G E  GL        +
Sbjct: 170 QQGVWVYGTALS------------EGAKTIYETDLRG-NIGIVMGAEGVGLRRLTQDCCD 216

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++  P+     SLN+S A  + ++E +   
Sbjct: 217 GLVYIPMAGTVQSLNVSVATGVCLFEALRQR 247


>gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
 gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
          Length = 181

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 13/173 (7%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + + K P V++L D +   N+G V R+   F +T + L       P+ +   ++   
Sbjct: 15  EEFKEANKLPLVVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTALGG 74

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNV 121
           +  +D  + F + ++AI  LH        ++  +   +   E +  L      + + Q+ 
Sbjct: 75  EDSVDW-KYFEHTEDAIKALH--------SQGYYVYCVEQVEGSTKLQNLQSTLDTTQHY 125

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            II G E  G+    + LS+  +  P      SLN+S    +++WE  +  + 
Sbjct: 126 AIIMGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSTTAGIVIWEFAKAYLE 178


>gi|300741849|ref|ZP_07071870.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300381034|gb|EFJ77596.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 155

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 29/166 (17%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKEA 80
           P++  N G   R        +L LV P  G+  E A    A  D   +  V V   L++A
Sbjct: 9   PEIPGNTGNAIRLAAVTG-AELHLVEPL-GFNFEDAHLRRAGLDYHDLAVVTVHKTLQDA 66

Query: 81  IADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              +     F + TTA                              ++FG E  GL   +
Sbjct: 67  WKAMMPARVFAFTTTAATSYADLEYRD----------------GDVLMFGPESVGLP-AD 109

Query: 137 IALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +   +  I+     P+ P   SLN++ +  + ++E       +  K
Sbjct: 110 VQQ-DEHITERVKIPMIPGRRSLNLANSASIAIFEAWRQHGFTGGK 154


>gi|269137386|ref|YP_003294086.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202]
 gi|267983046|gb|ACY82875.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202]
 gi|304557487|gb|ADM40151.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 219

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  V R      + Q+  V P  G       S++A ++  + +V+   ++  A+ +L
Sbjct: 19  PHNVSAVIRTADAVGVHQVHAVWP--GKSMRTLVSTAAGSNSWV-NVKTHRDIATAVGEL 75

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                         + +     A  V    I   +   I+ G+E+ G++ E + L++  I
Sbjct: 76  ---------KGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLADRDI 126

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFL 196
             P+  +  SLN+S A  L+++E       +      + +   ++ E    L
Sbjct: 127 IIPMVGMVQSLNVSVASALILYEAQRQRQQAGMYGRSQPSL--SEEEQQRLL 176


>gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 246

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246


>gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
 gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
          Length = 255

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 16/159 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74
            ++L   Q   N+G + R      + Q  L+ P      S K   +   A  V+ ++   
Sbjct: 112 AVLLDGVQDPGNVGTLLRTAAASGVKQ-VLMAPGCASAWSPKVLRAGQGAHFVL-AIHEE 169

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++L   +AD      TTA                            +  IFG E  G+  
Sbjct: 170 ADLAAFMADYR---GTTA----------VTCLDGATSLYEARWTGPLAWIFGAEGLGVRR 216

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E I  +   I  P+     SLN+  A  + ++E +   +
Sbjct: 217 ELIETAKLRIKIPMPGAVESLNVGAAAAVCLFEALRRKL 255


>gi|239817363|ref|YP_002946273.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           S110]
 gi|239803940|gb|ACS21007.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           S110]
          Length = 153

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 25/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+LV P++  N G V R   N   T L LV P      ++    +       +   V   
Sbjct: 4   IVLVQPEIPPNTGNVIRLAANTGCT-LHLVEPLGFSMDDRLLRRA--GLDYHEYAEVKRH 60

Query: 74  --FSNLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +  L EA       ++A T R     ++V   +                 ++FG E  
Sbjct: 61  AGWQALLEAERPAAERMFALTTRG---TRAVHDVRFQPGDW-----------LVFGSETS 106

Query: 131 GLTNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL     E       +  P+     SLN+S AV + V+E    
Sbjct: 107 GLPPAVREGFAEPQRLRLPMREGQRSLNLSNAVAVTVFEAWRQ 149


>gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. CB0205]
          Length = 406

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 16/174 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+        L L   R    +      +A A   +   RV  NL  A+  L
Sbjct: 176 PHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVV-NLNRALDSL 234

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                        ++ +    E ++ L+E    G  V ++ G E  GL+       + ++
Sbjct: 235 ---------KNEGYRVIGLAGEGSVALSEADLDGPLV-VVTGSEGDGLSMLTRKHCDQLV 284

Query: 145 SFPVNPLFPSLNISQAVLLMVWE-----CMENSIVSSEKNVKEQNTPATKGELL 193
             P+    PSLN S A  ++++E      M+    ++      +    T   L 
Sbjct: 285 RIPIRGATPSLNASVATAMVLYEVARRGWMKQISGAAPAPRIVRPQLPTPAPLE 338


>gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001]
 gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001]
          Length = 262

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 55/172 (31%), Gaps = 16/172 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
            L ++ +   I+L   Q   N+G + R+     + +     P   +  S K   S   A 
Sbjct: 106 PLPDTVEETCIVLDGVQDAGNVGSILRSAAAAGIQR-VFCAPGTAYAWSSKVLRSGMGAH 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++   ++  ++  A           A        ++          +       +  +F
Sbjct: 165 FLL---QIHEDVDAA-----------ALIGRLAVPIVITDSHGAEAIDECDLSGELAWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E  G++       +  ++ P      SLN++ A  + ++E          
Sbjct: 211 GNEGAGVSQAWRDAVSLRVTIPQPGGMESLNVAAAAAVCMFEQCRQQRARRA 262


>gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           infantis ATCC 700779]
 gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           infantis ATCC 700779]
          Length = 242

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  QTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++   SG  V +
Sbjct: 148 HVPIARVTNLSQTLDKLKEEGFWTFGT--------------DMNGTPCHKWNTSG-KVAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|309379967|emb|CBX21378.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 261

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 18/167 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  +   
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFL--- 165

Query: 71  VRVFS--NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             ++   +L+  +A     ++AT  R              A++ NE +   +    +FG 
Sbjct: 166 SEIYPQADLEIWLAHYKGRVFATALREEK----------QAVLYNEDLR--EPTTWVFGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  G+    +  ++  +  P++    SLN++ A  + ++E M    V
Sbjct: 214 EGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAV 260


>gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
          Length = 252

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 11/162 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L + +   N+G + R      +  + +   R+   +     +SA A   +   +V S
Sbjct: 102 ILVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKYVKIAKV-S 160

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI  L          +       A  +       +  +G  + ++ G E  G++  
Sbjct: 161 NINLAIDKL---------KKEGIWVYGAEIDGENYCYNQNMTGA-LALVIGSEGRGISKL 210

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                + ++  P+     SLN S A  ++++E ++  IV   
Sbjct: 211 TKQKCDVLVKIPMVGKVNSLNASVAAGIVMYEILKQRIVKRG 252


>gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
 gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
          Length = 257

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 21/168 (12%)

Query: 10  NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  + P II+  + +   N+G + R         + +   R    +     +SA A   +
Sbjct: 104 DKGEDPFIIICDEIEDPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWL 163

Query: 69  DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              RV +NL  A+ DL     +IY T     N     +                  VG++
Sbjct: 164 PVARV-ANLPAAVDDLKKQGIWIYGTDGAGENYSGVDMR---------------GPVGLV 207

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E +G+        + ++S P+     SLN S A  + ++E +   
Sbjct: 208 VGSEGFGMGRLMKEKCDFLLSLPMAGKITSLNASVAAGIFMYEVVRQR 255


>gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1002]
 gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1002]
          Length = 247

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   G  +ILV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T                 A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG--------------DAQKSVYETELD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + +++ P+     SLN+S A  + ++E +    V  
Sbjct: 190 GPVALVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247


>gi|218258662|ref|ZP_03474983.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225287|gb|EEC97937.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
           DSM 18315]
          Length = 179

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 1   MTPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +TP A   ++S K P V++L   +   N+G V R    F +  + L       P  +   
Sbjct: 15  LTPEA--FKDSEKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 72

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-G 118
           ++  A+  +     F +  +A+  L        + +      +   E + +L++ +    
Sbjct: 73  TALGAEETVGW-EYFEDTMDAVDKL--------KQQGYTVCAVEQAEGSTMLDKLLLDKN 123

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   +I G E  G+    +   +  I  P      SLN+S    +++W+  + 
Sbjct: 124 KKYAVIMGNEVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQ 176


>gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 249

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+     +    +V PRD     +   R  +  A  V+  ++V +
Sbjct: 104 VLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDKASGLTSVVRKVACGAAEVVPLIQVTN 161

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +L+E      +I  T                 A     +      + ++ G E  G+
Sbjct: 162 LARSLRELKDRGVWIVGTAG--------------EADHDVYQAKLTGPMALVMGAEGKGM 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++S P+     SLN+S A  + ++E +   
Sbjct: 208 RRLTREHCDELVSIPMAGAVSSLNVSVATGVCLFEAVRQR 247


>gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355]
          Length = 188

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 24/174 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+          +V P+D     +  A+  ++
Sbjct: 30  PDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG-AHAVIV-PKDRSAPLNATAKKVAS 87

Query: 63  NADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  +RV +    L+  + + + ++  T                 A     +    
Sbjct: 88  GAAENVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTVYQSKMT 132

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 133 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 186


>gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23
           rrna gm2251 2'-o-methyltransferase) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus
           asymbiotica]
          Length = 245

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L    + P +++L       N+G   R+     +    ++ PRD     +  A+  + 
Sbjct: 86  PDLLAKVETPFLLVLDGVTDPHNLGACLRSADAAGVH--VVIVPRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  VRV +    L+       ++  T                 A     +     
Sbjct: 144 GAAESVPLVRVTNLARTLRVLQEHNIWVVGTAG--------------EADHTLYQSKLTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 190 PIALVMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLFEAVRQR 242


>gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 13/168 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   +L  + K   I L D     N+G + R+     +  + L +P       +A   S 
Sbjct: 112 PDPKELLANTKRIAI-LEDVMNPTNVGAIFRSAAALGVEAVFLTHPSADPFYRRAARVSM 170

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNE-RIFSGQN 120
                +     +        D  +I A    ++  FK V +A KE AI L+   + +   
Sbjct: 171 GTVFQVPWTYFY-------KDSDYIGAL---HQAGFKVVSMALKENAIPLSAPELKNQDK 220

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + I+FG E  G+ ++ I+ S+ +   P+     SLN++ A  +  WE 
Sbjct: 221 LAIVFGTESTGIKDDTISKSDYVTIIPMYNEVDSLNVAAASAVTFWEL 268


>gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
           NJ9703]
 gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
           NJ9703]
          Length = 249

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P +++L       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               +V
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLYHCDLPD--------------SV 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ SEK
Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKSEK 249


>gi|218887307|ref|YP_002436628.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758261|gb|ACL09160.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 344

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
               ++    ++ L   Q   N+G +AR ++      L +V          A  ++A A 
Sbjct: 176 RDAPDAPLPLIVALDQVQDPGNVGTLARTLYALGAAGLVVVRHGGAALGGAAARAAAGAL 235

Query: 66  CVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +   +V +NL  A+     A      A  A    + K    P+               
Sbjct: 236 EKLPVAKV-TNLARALDEADEAGYTIYAAGGAAPETDGKPGSGPRNPFTEPLRT-----P 289

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             ++ G E  G+        +  +S P+   F SLN++QA  ++
Sbjct: 290 AVLVLGNEDSGIRPNVAKRCHFTLSIPMARDFDSLNVAQAGAIL 333


>gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
           ATCC 23685]
 gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
           ATCC 23685]
          Length = 228

 Score = 62.8 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 21/177 (11%)

Query: 6   PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61
           P L  S   P    IL       N+G   R+     +    +V PRD     +  A+  +
Sbjct: 67  PDLLASLDHPPFLLILDGVTDPHNLGACLRSADAAGI-DAVIV-PRDRSAQLNATAKKVA 124

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +  +RV +             A T R     N   +    EA   L +   +G 
Sbjct: 125 CGAAESVPLIRVTN------------LARTMRLLQEENIWIIGTAGEADHSLYQSKMAGA 172

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +     + 
Sbjct: 173 -MALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRSAAR 228


>gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           NM305]
 gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           NM305]
          Length = 246

 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L +  +  ++IL       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LASKPQPLLLILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  +RV +             A T R    ++N   V    EA   + +   +G  + 
Sbjct: 147 ETVPLIRVTN------------LARTMRELQEQHNVWIVGTAGEATSSIYDAKLTGA-IA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + +
Sbjct: 194 LVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIIRQKLST 246


>gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM
           10]
 gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Antiqua]
 gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Nepal516]
 gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Pestoides F]
 gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125]
 gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Angola]
 gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1]
 gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
 gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
 gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
 gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
           D27]
 gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003]
 gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10]
 gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516]
 gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua]
 gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92]
 gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F]
 gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125]
 gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis
           Angola]
 gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis YPIII]
 gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
 gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
 gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004]
 gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038]
 gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
           D27]
 gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003]
 gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 246

 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVRQRGLKA 246


>gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 268

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 20/171 (11%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++    +  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           S  +  ++    +   + +   +       A T  + +    +L              + 
Sbjct: 167 SMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALTDDSISIDHPIL-------------AAE 213

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             + I+ G E  GL+ + IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 214 PRLAIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATAAAVAFWQLR 264


>gi|254478160|ref|ZP_05091542.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
 gi|214035889|gb|EEB76581.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
          Length = 198

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 71/172 (41%), Gaps = 13/172 (7%)

Query: 7   QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSEKARSSSANA 64
           ++    +   ++ VD      N   + R      + ++      + G    +A S +AN 
Sbjct: 6   EVLQKRQKDFVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSEAKKGIEINEAVSMAANR 65

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I+  RV+   ++AI +L        + R N + V+   + +      I   +   ++
Sbjct: 66  WLFIE--RVYDR-EKAIKEL--------KERENLQVVVTWLDESSKDFREIDYTKPTLLV 114

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G E  G++ + + L++  I  P+  +  SLN+S A  ++++E +   +   
Sbjct: 115 VGNELKGVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQRLDKG 166


>gi|329912122|ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545704|gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
          Length = 262

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 16/169 (9%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADC 66
           +  +  G  ++L + Q   N+G + R+     + +    +P   +  S K   +   A  
Sbjct: 109 MPVALAGSAVLLDNLQDPGNMGSILRSAAAAGI-EYVFCSPGTAFAWSPKVLRAGMGAHF 167

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++   ++F N+   +A++          RN    VLA           I   Q V  +FG
Sbjct: 168 LL---KIFENVD--LAEVV---------RNASVPVLATSSHVAQRVYDIDLTQPVAWLFG 213

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            E  G+  + +AL+   ++ P      SLN++    +  +E +      
Sbjct: 214 HEGQGVEEQLLALATHQVAIPHIGAMESLNVAACAAVCFFEQVRQRSAG 262


>gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           enterocolitica W22703]
          Length = 246

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P++ +L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLESVETPLLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALQA 246


>gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia
           oklahomensis EO147]
 gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia
           oklahomensis C6786]
          Length = 262

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 17/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L        ++L   Q   N+G + R+     + Q     P   +  S K   S+  
Sbjct: 104 APALPERVVDTSVVLDGVQDAGNVGSILRSAAAAGVQQ-VFCAPGTAYAWSSKVLRSAMG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++     D+  +             V           +       V  
Sbjct: 163 AHFLLD---IHEDV-----DVDTLI------ERLAVPVALTDSHGARAIDDCDLSGPVVW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSS 176
           +FG E  G++      +   ++ P      SLN++ A  + ++E C +  +  +
Sbjct: 209 VFGNEGAGVSARWRDAATHRVTIPQPGGMESLNVAAAAAICLFEQCRQQRVRGA 262


>gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 247

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 21/177 (11%)

Query: 6   PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61
           P L    + P    IL       N+G   R+     +    +V PRD     +  A+  +
Sbjct: 86  PDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAAGV-DAVIV-PRDRSAQLNATAKKVA 143

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +  +RV +             A T R   + N   V    EA   L +   +G 
Sbjct: 144 CGAAENVPLIRVTN------------LARTIRLLQQENIWIVGTAGEADHSLYQSRMTGA 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +      +
Sbjct: 192 -MALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVVRQRSAKA 247


>gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 249

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           +IL   +   N+G + R      +  + +   R    ++    +SA A   +  VRV + 
Sbjct: 100 VILDGLEDPHNLGSILRTADAAGVDGVIIPKRRSVALTQTVAKASAGAIQHVPVVRVTNL 159

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + +   + ++I  T A N  +++ +               +   + I+ G E  G++
Sbjct: 160 SQTMDQLKDEGYWIAGTAADNATDYRQM--------------AADMPLAIVIGNEGHGMS 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                  +  I  P+     SLN S A  LM++E       + E
Sbjct: 206 RLVKEKCDFYIKIPMVGHINSLNASVAASLMMYEIYRKRHPAGE 249


>gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 249

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   I  +RV +
Sbjct: 97  VLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               ++    + ++I  T A N  +++ +               +G  +GI+ G E  G+
Sbjct: 157 LANTIETLKDNGYWIVGTEAENSTDYREM--------------DAGMPLGIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +       +  I+ P+     SLN S A  LM++E   
Sbjct: 203 SRLVKEKCDFYINIPMVGHVNSLNASVAASLMMYEVFR 240


>gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 223

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 71/179 (39%), Gaps = 21/179 (11%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +LV+      N+  + R      + +   ++ +D   +  + +  +     +++      
Sbjct: 24  VLVEAVNKPHNLSAILRTCDAAGVFEANFISEKDKVKTFNSTAQGSQKWVKLNN---HET 80

Query: 77  LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              A+++L      +Y TT   R+         E             N   + G E+WGL
Sbjct: 81  TISAVSELKKKGFKLYGTTLNERSTDYRNFDYSE-------------NTCFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           +++ I+  +  I  P++ +  SLN+S A  ++++E +      S   +K +   A + E
Sbjct: 128 SDQLISKVDESIFIPMSGMVQSLNVSVATSILLFEAIRQRKSKSLLPLKGEGLSAEEYE 186


>gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 256

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 15/162 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+  V R+     + ++  V     W  + K R  +A          + +++ +A+  
Sbjct: 36  PHNVSAVLRSCDAVGINRIHGV-----WDQKTKIRKGTAMGSEHWVKTEMHTSIGDAV-- 88

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                  +   + N + ++       V    I   Q   II G+E+ G T E IA+++  
Sbjct: 89  -------SVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEAIAVADKN 141

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           I  P+  +  SLN+S A  ++++E      V+   N  + + 
Sbjct: 142 IVIPMVGMVQSLNVSVAAAVVLYEAQRQREVAGMYNSLQLSE 183


>gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           kristensenii ATCC 33638]
 gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           kristensenii ATCC 33638]
          Length = 246

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLESVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + 
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALK 245


>gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
           ATCC 29473]
 gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
           ATCC 29473]
          Length = 248

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PGLLASVESPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  +RV +    L+    +  +I  T                 A     +     
Sbjct: 144 GAAENVPLIRVTNLARTLRVLQENNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    +++
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQRSLNA 246


>gi|85373106|ref|YP_457168.1| putative RNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786189|gb|ABC62371.1| putative RNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 152

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 15/161 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+LV P++  N G V R     ++ +L L++P      +K    S         +R+  
Sbjct: 3   AIVLVHPEIPGNTGAVGRTCVALDM-ELVLIHPLGFAIDDKRVKRS--GLDYWPHIRLVE 59

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                        A  A        +   +E A          ++  ++FGRE  GL   
Sbjct: 60  --------CASWDAFLAERAPRADQLFLFEEYAPRSFYEPDYPKDAYLVFGRETKGLPQG 111

Query: 136 EIALSNA--IISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
            +A ++   ++S P+ +    SLN++  V    ++ M   +
Sbjct: 112 IVA-AHRAQMVSLPMRSDKVRSLNLANTVAAAAYQAMRGQL 151


>gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 246

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSS-SANADCVIDS 70
           K PV++L       N+G + R+   F    L +V   R   P     +  ++ A  ++  
Sbjct: 99  KRPVLVLDQVTDPHNVGAILRSAAAF--DALCIVTQDRHAPPESGVLARSASGALEIVPW 156

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           VRV  NL  A+ ++             +  +    EA   L E I +   V ++ G E  
Sbjct: 157 VRVV-NLARALDEI---------AEAGYWRIGLDGEAEQTLGEAIGT-SRVALVLGAEGE 205

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           GL +  +A  + +   P++P   SLN+S 
Sbjct: 206 GLRHNSMAHCDILAKLPISPRMESLNVSN 234


>gi|223996685|ref|XP_002288016.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977132|gb|EED95459.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 364

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 72/178 (40%), Gaps = 18/178 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARS-SSANADCVIDS 70
             +++L + +   N+G + R+       ++    + PR G    +  + S+  A+ V+ +
Sbjct: 184 PLILVLDNLRSAANVGSIFRSADACGCLEIVTTGITPRPGANGAEKLAKSALGAERVV-A 242

Query: 71  VRVFSNLKEAIA-------DLHFIYATTARNRNNFKSVLAPK-------EAAIVLNERIF 116
            R F+  K+A+        +   +   T      +  +  P          +I + + + 
Sbjct: 243 TRHFATTKQALEYLRNKRPNFMLVGMETTERSKVYTELQYPGSKDSLTTTDSISIEDEVL 302

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +   V +  G E  G+  + + L +A++  P+     SLN++    ++++E +     
Sbjct: 303 TSPGVALFLGNEVSGVDTDIMPLLDAVVEIPMFGKKNSLNVASCAPVVMYEVLRQWGA 360


>gi|332289318|ref|YP_004420170.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
           UMN179]
 gi|330432214|gb|AEC17273.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
           UMN179]
          Length = 161

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R   N    +L L++P      +K    S       +   +   
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANCGF-RLHLIHPLGFQWDDKRLRRS--GLDYHEYTTIKHH 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  E +                 K + A        + ++       ++FG E  G+  
Sbjct: 61  QSYAEFLE------------SEQPKRLFALTTKGGPAHSQVKFQLGDYLMFGPETRGIPM 108

Query: 135 EEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +        I  P+     S+N+S +V + V+E    
Sbjct: 109 AILNTMPIEQKIRIPMCANSRSMNLSNSVAVTVYEAWRQ 147


>gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
 gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
          Length = 212

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 64  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 124 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 169

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 170 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 205


>gi|120402541|ref|YP_952370.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119955359|gb|ABM12364.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 154

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 19/165 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++   P++  N G   R +      +L LV P     SE     +      + SV V  +
Sbjct: 4   VMFYSPRIAPNTGNAIRMVAGTGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHPD 62

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L  A A +    ++A TA               A      +       ++FG E  GL  
Sbjct: 63  LDSAWAAVTPARVFAFTA--------------HATASFADVAYRPGDVLMFGPEPTGLDA 108

Query: 135 EEIALSN--AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +A  +  A +  P+     SLN+S A  + V+E       S  
Sbjct: 109 ATLADPHITAQVRIPLLAGRRSLNLSNAAAVAVYEAWRQQGFSGA 153


>gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
           V453]
 gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
           V453]
          Length = 250

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 16/157 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L + +   N+G + R         + L   R    +     +SA A   +   RV +   
Sbjct: 103 LDEIEDPHNLGSILRTADCTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQ 162

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + +      ++  T          V+   +    L +       V I+ G E  G+   
Sbjct: 163 TIDQLKEMGVWVVGT----------VVDAVQ---ELYDTEVFDGPVAIVIGNESKGMGRL 209

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++  P+     SLN S A  ++++E +   
Sbjct: 210 IREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 246


>gi|300173493|ref|YP_003772659.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887872|emb|CBL91840.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811]
          Length = 170

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P +  N G +AR          L L+ P      +K    +       + V++  
Sbjct: 5   IVLFEPLMPANTGNIART--TAGTNAILHLIEPLGFDLDDKHVKRA--GLDYWEHVKLVK 60

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++L + +A        T  +++    V             +    +   +FG+E  GL 
Sbjct: 61  HASLPDFLA--------TLTDKDQLYLVSKFANMDYTQPNYMQMQGDQYFLFGKETTGLP 112

Query: 134 NEEIALSN---AIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVK 181
             E+ +       I  P N     SLN+S  V ++++E +      +   + 
Sbjct: 113 --EVFMRQNPEKAIRIPQNDTHIRSLNLSNTVAIVLFEALRQQHFPNLDTIH 162


>gi|221065310|ref|ZP_03541415.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           KF-1]
 gi|220710333|gb|EED65701.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           KF-1]
          Length = 164

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 59/173 (34%), Gaps = 15/173 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           I+LV P++  N G V R   N   + L L+ P  G+  E      A  D     +V   +
Sbjct: 4   IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPL-GFSMEDRHMRRAGLDYHEYANVARHA 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I             R      +    ++        +G    ++FG E  GL  E
Sbjct: 62  SWDAFIDSCQ--------PRRERMFAMTTHSSSPAHAMEFKAGDW--LVFGSESKGLPPE 111

Query: 136 EIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             A       +  P+     SLN+S AV + V+E       +     + +   
Sbjct: 112 VRAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQGFAGAALAEPKTAL 164


>gi|313141828|ref|ZP_07804021.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130859|gb|EFR48476.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 157

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 68/170 (40%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           I+L  P++ +N G + R    F     L L++P     ++K    +       + + V+ 
Sbjct: 5   IVLHQPRIPQNTGNIGRLC--FASDSVLHLIHPLGFSITQKELKRA--GMDYWNHLEVYE 60

Query: 76  --NL----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             NL    + ++ ++   Y TT   ++      AP +    L+            FGRE 
Sbjct: 61  WENLSSFMESSLLEIPHCYLTT---KSQTPYYNAPLKKGAYLH------------FGRED 105

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            GL +  ++   +   + P+     SLN++ +V ++++E +         
Sbjct: 106 AGLDSTLLSHYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPSP 155


>gi|224418296|ref|ZP_03656302.1| rRNA methylase (SpoU class) [Helicobacter canadensis MIT 98-5491]
 gi|253827619|ref|ZP_04870504.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
 gi|253511025|gb|EES89684.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
          Length = 163

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 68/170 (40%), Gaps = 27/170 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           I+L  P++ +N G + R    F     L L++P     ++K    +       + + V+ 
Sbjct: 11  IVLHQPRIPQNTGNIGRLC--FASDSVLHLIHPLGFSITQKELKRA--GMDYWNHLEVYE 66

Query: 76  --NL----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             NL    + ++ ++   Y TT   ++      AP +    L+            FGRE 
Sbjct: 67  WENLSSFMESSLLEIPHCYLTT---KSQTPYYNAPLKKGAYLH------------FGRED 111

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            GL +  ++   +   + P+     SLN++ +V ++++E +         
Sbjct: 112 AGLDSTLLSHYKDYCYTIPMQNNARSLNLATSVGIVLYEGIRQRDFIPSP 161


>gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
 gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
          Length = 251

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 69/174 (39%), Gaps = 22/174 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA 64
            L++     V++L +    +N+G + R+   F+++ L ++ P  R    +      S+ A
Sbjct: 95  TLKDDDSALVLVLDEITDPQNLGAILRSADQFSVS-LVII-PERRSAQANTTVVKVSSGA 152

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +    V +    ++   +   ++Y  +   +  +K+V                 +  
Sbjct: 153 AQYVPLATVTNMNREIEYLKSQGFWVYGASMSGQAVYKTVFP---------------KRT 197

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            ++ G E  G+      L + +++ P++    SLN+S A  ++++E        
Sbjct: 198 VLVMGNEGKGIGQLTQKLCDHMVTIPMSGHIDSLNVSVATGILLYEVRRQQATK 251


>gi|317485615|ref|ZP_07944491.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923152|gb|EFV44362.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 196

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 17/188 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   ++L +     N+  + R+   F +  L L      +P E  + SSA+A   ++SVR
Sbjct: 22  KDLTLVLANIHDPHNVSAIYRSADAFGVAALHLYYTDTAFP-ELGKKSSASARKWVESVR 80

Query: 73  V--FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                 L  A+ A  H I AT+            P+   +   +     +   +I G E 
Sbjct: 81  HRSAEELYAALKAGGHQILATS----------CTPESKPLGAYDFT---KPTAVIMGNEH 127

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            G+  E  +L +  +  P+  +  S N+S A  +++ E     + +   +          
Sbjct: 128 SGVPAELNSLVDGEVYIPMYGMIQSFNVSVAAAVILSEASRQRVQAGMYDRPSYPPDELA 187

Query: 190 GELLSFLD 197
             L ++++
Sbjct: 188 ARLEAWIE 195


>gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu012]
 gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu012]
          Length = 256

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V+ +   N G V R         + L   R   P       ++        V V  ++
Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAG-RSVDPYNGKCLRASTGSIFAIPVVVAPDV 170

Query: 78  KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             AIADL      + AT               E A+   +R+ + +    +FG E  GL+
Sbjct: 171 GAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEAHGLS 218

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  AL++  +   ++    SLN++ A  + ++E    
Sbjct: 219 AEIAALADHRVHILMSGGAESLNVAAAAAICLYESARA 256


>gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium
           sibiricum 255-15]
          Length = 254

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              +I+L + +   N+G + R         + +   R    ++    +S  A   I  VR
Sbjct: 101 TPLMILLDELEDPHNLGSILRTADAVGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVR 160

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    +++      +   T AR  ++++++                   +GI+ G E 
Sbjct: 161 VTNLTRTMEDLKKKGIWFVGTDARESDDYRTL--------------DGTMPLGIVIGSEG 206

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G++       + ++  P+     SLN S A  L+++E     
Sbjct: 207 KGMSRLVREKCDFLVHLPMAGHVTSLNASVAASLLLYEVYRTR 249


>gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
          Length = 442

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G + R+        L L   R    +      +A A   +   RV +   +L+   
Sbjct: 255 PHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLE--- 311

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                      R ++    V+   E              + ++ G E  GL+       +
Sbjct: 312 -----------RLKDAGYRVVGLAEEGSATLAEADLDGPLVVVTGSEGQGLSMLTRRHCD 360

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            ++  P+  + PSLN S A  L+++E    + + + K      
Sbjct: 361 QLVRIPLRGVTPSLNASVATALLLYEVARRNWMGALKGTDPAP 403


>gi|320102938|ref|YP_004178529.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
 gi|319750220|gb|ADV61980.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
          Length = 284

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 13/175 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQL--GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60
            A Q   +  G  ++LV P L   EN+G + R         L  V P    P S +    
Sbjct: 113 AASQRVTARSGRSVVLVCPALFNPENLGALIRLGDVMGAVGLV-VGPGCPDPLSRRVTRV 171

Query: 61  SANAD---CVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           S  A     V+++  V + L     + D     A          S L P    +   +RI
Sbjct: 172 SMGASLAFPVVEASNVAAALDYLAGLGDHLLAAAVC---EPAGPSALKPGATVVPF-DRI 227

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                V ++ G E  GL    +  ++ + +  + P   SLN++ A  ++++    
Sbjct: 228 TWPDRVALLLGSEAHGLEPCWVQRADQLTTIVMRPGADSLNLAVATGILLYHLTR 282


>gi|282890121|ref|ZP_06298652.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499972|gb|EFB42260.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 277

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 22/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
           QL+N     +I+    +   N+G + R      L  L + +      +     +S     
Sbjct: 120 QLKNQNNPFLIVAEAIEKPGNLGTILRCSDAVGLDALIVCDACTDIHNPNVVRASVGTLF 179

Query: 65  -DCVIDS--VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              VI+S        LK+    +  + AT                 A      I     +
Sbjct: 180 TVPVIESQGAETLQWLKQ--KGISILAAT---------------PHAKQELADIDLTGPL 222

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I  G E+ GL+ + +  ++  +  P+  +  SLN++ A  ++++E +   
Sbjct: 223 AIAVGTEQLGLSPQWMEQADIQVRIPMYGIADSLNVAMATTILLYEALRQR 273


>gi|120601954|ref|YP_966354.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120562183|gb|ABM27927.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
          Length = 196

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 21/192 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   ++L +     N+  + R+   F + Q+ L      +P+   ++S++ A   +D+VR
Sbjct: 22  KDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPALSGKTSAS-ARKWVDTVR 80

Query: 73  V--FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                +L   + A  H + AT+           +P    +   +     +   II G E 
Sbjct: 81  HQDRDSLMSTLRASGHQVLATS----------CSPVAKPVADYDLT---RPTAIIMGNEH 127

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            G++ E + + +  +  P+  +  S N+S A  +++ E     +V+            T 
Sbjct: 128 SGVSQELVDVVDGEVYIPMYGMIQSFNVSVAAAILLSEASRQRVVAGMYAKPTY----TD 183

Query: 190 GELLSFLDYLEI 201
            E  + L     
Sbjct: 184 EEFEARLAQWIE 195


>gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
 gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
          Length = 278

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 11/170 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L   AKG +++L      +NIG + R+   F    + L +      S     ++  A  
Sbjct: 117 ELGTPAKGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVGAVD 176

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                RV  NL  A+ +L           +     +A    A    + +   Q   ++ G
Sbjct: 177 KAPYARVV-NLSRALEELA----------DLGWRAVALAGEAEQSLDAVLDSQPTVLVLG 225

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            E  G+        +A+   P+   F SLN+S A  + ++E  +   V  
Sbjct: 226 SEGEGVRRLVAEHCDALGKIPMPGGFESLNVSAAAAIALYEASKVRAVDE 275


>gi|309803077|ref|ZP_07697176.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 11V1-d]
 gi|309806996|ref|ZP_07700978.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 03V1-b]
 gi|312872567|ref|ZP_07732635.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312875010|ref|ZP_07735029.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2053A-b]
 gi|315653901|ref|ZP_07906817.1| RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325913153|ref|ZP_08175523.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 60-B]
 gi|308164858|gb|EFO67106.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166616|gb|EFO68813.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 03V1-b]
 gi|311089755|gb|EFQ48180.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2053A-b]
 gi|311091929|gb|EFQ50305.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|315488597|gb|EFU78243.1| RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325477574|gb|EGC80716.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 60-B]
          Length = 170

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           ++L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5   VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRA--GLDYWDKVKINK 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L++ +A        T ++ +    +      +    E     +N   +FG+E  GL 
Sbjct: 61  HDSLEDFLA--------TLQSNDEMYLISKFSSKSYTDVEYTDPTKNYYFVFGKETTGLP 112

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +       +  P++    + N++ +V ++++E +   
Sbjct: 113 KTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQ 152


>gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
 gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
          Length = 270

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 10/154 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G V R      +  + L        S K    S  A   +    +   +  A+ 
Sbjct: 126 QDPSNLGTVLRTAEALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMA-LVETMPPAVN 184

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L          +        P   A  + + +FS  ++ ++ G E  GL  E I     
Sbjct: 185 ALE--------QKGFVTMAAVPDREAEPITQVLFSSPSIVLV-GNEGNGLKPETIRACQR 235

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            ++ P+     SLN S A  L++WE M  S  ++
Sbjct: 236 RVTIPMLGRAESLNASVAASLLMWEMMRASGEAA 269


>gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
 gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
          Length = 323

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 26/174 (14%)

Query: 11  SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           S   PVI++ +      N+G + R         L +   R    +      +A A   ++
Sbjct: 158 SVTDPVIVVAEGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAGA---LE 214

Query: 70  S---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           +    RV  NL  A+ +L     +IY T         +V                   + 
Sbjct: 215 NFSVARVV-NLSRALEELKEAGFWIYGTATTGSEPLHTVKF--------------SGPIV 259

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  GL+       + ++S P+    PSLN S A  + ++E      +++
Sbjct: 260 LVIGSEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALYEIYRQRSLNT 313


>gi|29839982|ref|NP_829088.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
 gi|29834329|gb|AAP04966.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
          Length = 265

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 22/158 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI 81
           +   N+G + R         + L +P     +     SS      +    ++S  L E +
Sbjct: 125 EKPGNVGAILRIADGVGADGVILCDPIVDLYNPNVIRSSLGTVFTLP---IWSATLDEVL 181

Query: 82  ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             +      ++AT+            P+ + +   E     Q + ++FG E+ GLT+  +
Sbjct: 182 QTIAEEKWQVFATS------------PRASTMYFCE--NYNQPLALVFGSEKDGLTSHWL 227

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             + A IS P+     SLN+S AV  + +E +    ++
Sbjct: 228 KGNFAKISLPMLGQVDSLNLSTAVSAVAYEVIRQRWLA 265


>gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
           capsiferriformans ES-2]
 gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
           capsiferriformans ES-2]
          Length = 247

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           +L   Q   N+G   R+   F +    ++ P+D      A     +  A   +  + V +
Sbjct: 100 VLDGIQDPHNLGACLRSADAFGVH--AVIAPKDRAVGITATVEKVACGAAETVPYITVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L+E      ++                    A            + I+ G E  GL
Sbjct: 158 LARTLRELKDQGIWVVGAAG--------------EAKQDLHSFKHTGPLAIVLGAEGEGL 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               +   + ++  P+     SLN+S +  + ++E     
Sbjct: 204 RRLTMETCDELVRIPMLGSVESLNVSVSTGICLFEARRQR 243


>gi|299534093|ref|ZP_07047445.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           S44]
 gi|298718002|gb|EFI59007.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           S44]
          Length = 164

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 23/177 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           I+LV P++  N G V R   N   + L L+ P  G+  E      A  D     +V   +
Sbjct: 4   IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPL-GFSMEDRHMRRAGLDYHEYANVARHA 61

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +         ++A T    ++     A +  A              ++FG E  G
Sbjct: 62  SWDALLETCQPQRERMFAMTT---HSSSPAHAMEFKAGDW-----------LVFGSESKG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           L  E  A       +  P+     SLN+S AV + V+E       +     + +   
Sbjct: 108 LPPEVRAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQGFAGAALAEPKTAL 164


>gi|15608782|ref|NP_216160.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Rv]
 gi|148661440|ref|YP_001282963.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu001]
 gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu010]
 gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu011]
 gi|1838995|emb|CAB06638.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium
           tuberculosis H37Rv]
 gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu001]
 gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu010]
 gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu011]
          Length = 260

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V+ +   N G V R         + L   R   P       ++        V V  ++
Sbjct: 112 VTVEIREPGNAGTVIRIADAMGAAAVILAG-RSVDPYNGKCLRASTGSIFAIPVVVAPDV 170

Query: 78  KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             AIADL      + AT               E A+   +R+ + +    +FG E  GL+
Sbjct: 171 GAAIADLRAAGLQVLATA-----------VDGEMALDDADRLLA-EPTAWLFGPEAHGLS 218

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  AL++  +   ++    SLN++ A  + ++E    
Sbjct: 219 AEIAALADHRVHILMSGGAESLNVAAAAAICLYESARA 256


>gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           frederiksenii ATCC 33641]
 gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           frederiksenii ATCC 33641]
          Length = 246

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLASVETPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRALKA 246


>gi|145219814|ref|YP_001130523.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205978|gb|ABP37021.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 232

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 73/204 (35%), Gaps = 19/204 (9%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +      +++ +     N+  + R+     +  L  V+ +    + +  ++ A     
Sbjct: 14  LASRQPDLTVVMDNVNKPHNLSAIIRSCDAVGIHDLYAVSSKKSIHTTQNAAAGAGRWTN 73

Query: 68  IDSVRVFSNLKEAI--ADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +   +    L   +    +  + AT T  +R+                          I+
Sbjct: 74  LHLRKDIGTLCRKLGMEGMQVLAATNTEESRDFRTIDFT---------------LPTAIV 118

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQ 183
            G E  G++ E I  ++  I+ P+  +  SLN+S A  L+++E   + S+    +  + +
Sbjct: 119 LGAEWEGVSAEAIQAADMAITIPMYGMVESLNVSVAAALILFEAERQRSLKGMYRTRRLE 178

Query: 184 NTPATKGELLSFLDYLEISLEERG 207
            +   K         L   L E+G
Sbjct: 179 ESLYRKLLFELSYPRLSRQLREKG 202


>gi|292900306|ref|YP_003539675.1| RNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200154|emb|CBJ47280.1| putative RNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|312173349|emb|CBX81604.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 344

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 15/171 (8%)

Query: 3   PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P +  L  S +   ++ L D     N+G + R+  +F    L LV+      S  A  ++
Sbjct: 185 PVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243

Query: 62  -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A+ V           +AI+   F     A  +  +  V       + L+        
Sbjct: 244 EGGAEHV-----------QAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELP-AR 291

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + ++ G+ER GL++      +  +S        SLN+S A  +++ E    
Sbjct: 292 MVLVLGQERDGLSDSSFQRGDLSVSIGGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|238060046|ref|ZP_04604755.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237881857|gb|EEP70685.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 297

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + RA+    +    L++P    P   ++   S      +   R+     EA+A + 
Sbjct: 154 NLGAIFRAVAALGV-DAVLLSPSCADPLYRRSVRVSMGEVFAVPYARLEP-WPEALAGV- 210

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  R        + P   A+ +    +       ++ G E  GLT   +  S+A +
Sbjct: 211 -------RAAGFTVLAMTPAPDAVPIQRLTVAQRARSALLLGAEGAGLTRAALDASDARV 263

Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170
             P+     SLN++ A  +  WE   
Sbjct: 264 VIPMRRGVDSLNVAAATAVACWELGR 289


>gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           meningitidis 053442]
 gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           meningitidis 053442]
          Length = 234

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 73  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 130

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P                 
Sbjct: 131 AETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPD--------------RA 176

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 177 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233


>gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5948]
 gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5948]
          Length = 248

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  ++  T A N  +++               + +  ++ I+ G E  G+
Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +       +  I  P+     SLN S A  LM++E         E
Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247


>gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 282

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 15/175 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++  +    V +L   +   N G V R         + L +      + KA  +S  +  
Sbjct: 112 EILAARPKLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLF 171

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +        ++ A+A L      + A      ++  + L               G    
Sbjct: 172 HLPVAVGVP-VERAVAGLREAGVRVLAADGAGEDDLDTELDAGTM----------GGPTA 220

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            +FG E WGL  E  AL++A++  P++    SLN++ A  + ++        +  
Sbjct: 221 WVFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLYASARAQRAAGG 275


>gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 271

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 15/157 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73
           V+++   Q   N+G + R    F    +  VN      + K   S+  +   +D    R 
Sbjct: 127 VVVIDSVQDPGNLGTIIRCADAFGFECVITVNGTVDVYNPKVVRSAMGSMFHVDVVRERK 186

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + EA+             R     V  P     V   ++       I+ G E  G+ 
Sbjct: 187 KEEVLEALN-----------KRGFALYVTTP--YGDVDISKLSVDDRFAIVIGNESKGVD 233

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              +  +   +   +     SLN + A  ++++E  +
Sbjct: 234 VAFLENATKKVKISMPGKAESLNSAVAAAIVLYELRK 270


>gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 263

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 26/167 (15%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +  ++    + L   +   N+G + R      +  + L+       S +   ++  +  
Sbjct: 111 DIDPNSNAVWVALEQIRDPGNLGTIIRTADAAGIGGVILIGDCVDPFSVETVRATMGSVF 170

Query: 67  VIDSVRVFSNLKEA-IADLHF----IYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +    V    +EA +AD       +  T  TA + +       P               
Sbjct: 171 ALP---VVKCTREAFLADRSRWTGSVVGTLLTATHNHRTADYRRP--------------- 212

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              I+ G E+ GLT +  A  +  +  P+     SLN+S A  +M++
Sbjct: 213 -TLILMGTEQSGLTPDIAAACDTHVKIPMRGRADSLNLSVATGIMIY 258


>gi|257469642|ref|ZP_05633734.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317063878|ref|ZP_07928363.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689554|gb|EFS26389.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 255

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 11/166 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + PY        +  +++L       N+G + R         + L        +EK   S
Sbjct: 93  VYPYIKGSLEKLQKNIVVLDKIGDPGNLGTIIRVADAAGFKDIILTKGSVDCYNEKVVRS 152

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  +  +++   ++   +E I  L          R  +K  +   +   V    +   + 
Sbjct: 153 SMGS--ILNMNILYMEEEELITFL---------KREGYKIEVTALDKDSVSYTEMKLTER 201

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             I+FG E  G++   + + +  I  P+  +  SLN++ A  ++++
Sbjct: 202 NAIVFGSEGDGVSQNFLKMCDEKIIIPIYGIAESLNVAMACGIILY 247


>gi|313471787|sp|A2RKW7|TRML_LACLM RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase llmg_1343
 gi|300070939|gb|ADJ60339.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 169

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G +AR     N T L L+ P     S+K    +       D V +   
Sbjct: 4   IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRA--GLDYWDKVNIV-- 58

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             + + D     A    +      V    E      +     ++   +FGRE  GL  E 
Sbjct: 59  YHKNLQDFMNSIA----DGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEF 114

Query: 137 I-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +  I  P+N     SLN+S    ++V+E ++  
Sbjct: 115 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 152


>gi|213029186|ref|ZP_03343633.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 69

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +  +ID++ VF  L +A+ D+ F  ATTAR+R  F    +P E   +L E+    ++  
Sbjct: 1   GSGDIIDNIEVFHTLADALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAA 60


>gi|125624162|ref|YP_001032645.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492970|emb|CAL97933.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 196

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G +AR     N T L L+ P     S+K    +       D V +   
Sbjct: 31  IALFEPRIHFNTGNIARTCAATN-TVLHLIEPFGFEISDKHLKRA--GLDYWDKVNIV-- 85

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             + + D     A    +      V    E      +     ++   +FGRE  GL  E 
Sbjct: 86  YHKNLQDFMNSIA----DGGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEF 141

Query: 137 I-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +    +  I  P+N     SLN+S    ++V+E ++  
Sbjct: 142 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQ 179


>gi|23308848|ref|NP_600607.2| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21324156|dbj|BAB98781.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
          Length = 198

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 15/160 (9%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSN 76
           V+ +   N G + R         +            KA  SSA +   I   R   +   
Sbjct: 51  VETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADV 110

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +  +    I AT+A    +        + A  L  +         +FG E  GL    
Sbjct: 111 LGQLRSKGLQILATSADGEVDL-------DDADELLAK-----PTAWLFGNEAHGLDESL 158

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +A ++  +  P+     SLN++ A  + ++E  +      
Sbjct: 159 LAQADHRVRIPIRGRAESLNLATAASICLYESSKALFAGE 198


>gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
          Length = 247

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 99  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 204

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 205 IIGEKCDFLIHLPMVGKVTSLNASVAASLLMYEVYR 240


>gi|46446016|ref|YP_007381.1| hypothetical protein pc0382 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399657|emb|CAF23106.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 148

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 17/158 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL  PQ+ +N G + R       T L +V+P      ++    +       + V V  +
Sbjct: 3   IILFQPQIPQNAGNIVRTCAVTG-TDLMMVHPLGFSTHDRWLKRA--GLDYWEGVSV--S 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
             E + +            N   S       A  L   +    +  +IFG E  GL +  
Sbjct: 58  FIENLENY---------LENQQASFYFFSSKATTLYTEVSYAADSFLIFGSETSGLPSIF 108

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +E    N  +  P+ P    LN++ +  + ++E     
Sbjct: 109 QE-KWGNRFVKIPMKPKVRCLNLATSAGIALYEAWRQQ 145


>gi|84495467|ref|ZP_00994586.1| putative rRNA methylase [Janibacter sp. HTCC2649]
 gi|84384960|gb|EAQ00840.1| putative rRNA methylase [Janibacter sp. HTCC2649]
          Length = 272

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 16/152 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEA 80
           +   N+G + R      +  +  V+P   W +      S        + S  +   +   
Sbjct: 132 EKPGNLGAMLRTADAAGVDAVIAVDPVTDWGNPNVVRGSKGTVFSIPVASATLGETIDWL 191

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 + ATT            P    +  +  +  G  V I  G E++GLT+E +  +
Sbjct: 192 REGGIRLIATT------------PDTETLHTDADLTGG--VAIAVGTEKFGLTDEALRAA 237

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  +  P++    SLN S A  ++V+E +   
Sbjct: 238 DLRVRIPMHGQVNSLNASAAAAIVVYEAVRQR 269


>gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y4.1MC1]
 gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y4.1MC1]
          Length = 245

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 97  ILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLA 156

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++S+                   + ++ G E  G+  
Sbjct: 157 RTMDELKERGVWIVGTDAKAKEDYRSL--------------DGTMPLALVIGSEGKGIGR 202

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +   + +I  P+     SLN S A  L+++E         E
Sbjct: 203 LILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 245


>gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
 gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
 gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
 gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
          Length = 254

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 23/167 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVI 68
           KG  II  + Q   N+G + R    F  + +  +N      + K   +S  +      ++
Sbjct: 105 KGIYIIADNIQDPGNLGTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHIPVIV 164

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            + ++   LK+    +  ++AT  + R               L         V  + G E
Sbjct: 165 TASQILLKLKQ--RGIK-VFATHLKARK--------------LVHECNISDKVAFVLGNE 207

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             G++   + L +  +  P+     SLN+S A  + ++E     ++ 
Sbjct: 208 AKGVS--VVDLVDDFVKIPMTGEAESLNVSIAAGIFLYESQRQRLIK 252


>gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens B str. ATCC 3626]
 gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens ATCC 13124]
 gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens B str. ATCC 3626]
          Length = 289

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 11/160 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R         + +   R+   +     +S  A   +   +V +
Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKV-T 199

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI +L           NN     A         E  F G   GII G E  G++N 
Sbjct: 200 NINNAIEEL---------KANNLWIYGADIAGEEYSYETNFKGA-CGIIIGSEGRGMSNL 249

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + ++  P+     SLN S A  +M++E +++ I+ 
Sbjct: 250 TKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRIIK 289


>gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens str. 13]
 gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens CPE str. F4969]
 gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens D str. JGS1721]
 gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str.
           13]
 gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens CPE str. F4969]
 gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens D str. JGS1721]
          Length = 289

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 11/160 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R         + +   R+   +     +S  A   +   +V +
Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKV-T 199

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI +L           NN     A         E  F G   GII G E  G++N 
Sbjct: 200 NINNAIEEL---------KANNVWIYGADIAGEEYSYETNFKGA-CGIIIGSEGRGMSNL 249

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + ++  P+     SLN S A  +M++E +++ I+ 
Sbjct: 250 TKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRIIK 289


>gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9763]
 gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9719]
 gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9635]
 gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
 gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5937]
 gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A8117]
 gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A10102]
 gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M809]
 gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315]
 gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2]
 gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9763]
 gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9719]
 gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9635]
 gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
 gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5937]
 gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A10102]
 gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A8117]
 gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus
           04-02981]
 gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M809]
 gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11]
 gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 248

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  ++  T A N  +++               + +  ++ I+ G E  G+
Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +       +  I  P+     SLN S A  LM++E         E
Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247


>gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 244

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 13/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +     N+G + R         + +   R    +  A  +SA A   I   RV + 
Sbjct: 97  IILDEITDPHNLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTN- 155

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                        TT    + +   +      A   + +      +G++ G E  G++  
Sbjct: 156 -----------ITTTINYLKEHNIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRL 204

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + +I  P+     SLN S A  ++++E +   
Sbjct: 205 VRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQR 241


>gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           BVS033A4]
 gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           BVS033A4]
          Length = 244

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 13/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +     N+G + R         + +   R    +  A  +SA A   I   RV + 
Sbjct: 97  IILDEITDPHNLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTN- 155

Query: 77  LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                        TT    + +   +      A   + +      +G++ G E  G++  
Sbjct: 156 -----------ITTTINYLKEHNIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRL 204

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + +I  P+     SLN S A  ++++E +   
Sbjct: 205 VRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQR 241


>gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           metalliredigens QYMF]
          Length = 248

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 17/164 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL +     N+G + R      +  + +   R    +     +SA A   +   +V +
Sbjct: 98  ILILDEIMDPHNLGSIIRTADAVGVDGIIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + +      ++                       L+        + ++ G E  G+
Sbjct: 158 ISQTIDKLKEKGVWVAG--------------ADMKGKQLHFEADFKGALALVIGGEGSGI 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +       + ++  P+     SLN S A  ++++E     I + 
Sbjct: 204 SRLVKEKCDFLVKLPMAGQVSSLNASVAAAVLMYEAYRQRISAE 247


>gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens E str. JGS1987]
 gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens NCTC 8239]
 gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens C str. JGS1495]
 gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens SM101]
 gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens C str. JGS1495]
 gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens E str. JGS1987]
 gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens NCTC 8239]
          Length = 289

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 11/160 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R         + +   R+   +     +S  A   +   +V +
Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKV-T 199

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI +L           NN     A         E  F G   GII G E  G++N 
Sbjct: 200 NINNAIEEL---------KANNVWIYGADIAGEEYSYETNFKGA-CGIIIGSEGRGMSNL 249

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + ++  P+     SLN S A  +M++E +++ I+ 
Sbjct: 250 TKKKCDKLVKIPMVGKINSLNASVAGGIMMYEVLKSRIIK 289


>gi|218768195|ref|YP_002342707.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
 gi|121052203|emb|CAM08526.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
 gi|316985032|gb|EFV63985.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
 gi|325134334|gb|EGC56980.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M13399]
 gi|325140360|gb|EGC62882.1| RNA methyltransferase, TrmH family [Neisseria meningitidis CU385]
 gi|325144441|gb|EGC66741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240013]
 gi|325200182|gb|ADY95637.1| RNA methyltransferase, TrmH family [Neisseria meningitidis H44/76]
 gi|325206036|gb|ADZ01489.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M04-240196]
          Length = 261

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 28/172 (16%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  +   
Sbjct: 109 PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFL--- 165

Query: 71  VRVFSNLKEAIADLH--------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             ++       ADL          ++AT  R                 L E         
Sbjct: 166 SEIYPQ-----ADLEIWLVRYKGRVFATALREEKQ------AVLYGEDLCE------PTA 208

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +FG E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 209 WVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 260


>gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
           DSM 10642]
 gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
           DSM 10642]
          Length = 224

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 20/153 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  +N+G V R    F  + + +   R    +E     S  A   +   RV  NL  +I 
Sbjct: 87  QDPQNLGAVLRTAEFFGCSGVVIPKRRAAQVTETVVEVSQGAAFHLKISRV-ENLANSIK 145

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            +      +       ++       P                + ++ G E  G++     
Sbjct: 146 KIKKYGFLVVGAEIGGKDLRSVKFTP---------------PLALVVGGEDRGISQPVKK 190

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + + ++        PSLN+S A  ++++E   +
Sbjct: 191 MCDFLVEIKGVGKTPSLNLSVAAGILLYEVRRH 223


>gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
 gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
          Length = 241

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 23/160 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           IL      +NIG + R+   FN+  + L  P D  P+E     +  A   ++ +++   +
Sbjct: 99  ILDQITDPQNIGAIIRSAAAFNIDAIIL--PLDNSPNENGT-IAKAACGTLELIKIIKVT 155

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL   I  L     ++   T              EA     +++ S   + +IFG E  G
Sbjct: 156 NLNSCINYLKKHGFWVIGLTG-------------EANDYFTDKLISD-KIALIFGSEDKG 201

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +        + +   P++    SLN+S A  ++     ++
Sbjct: 202 MRRLVQENCDYLAKIPISDKVESLNVSNAASIIFHSLWDH 241


>gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius
           str. 'morsitans']
 gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 245

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 19/172 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L   A   +++L       N+G   R      +    +V PRD     +  A+  ++ A 
Sbjct: 89  LTQQAAPLLLVLDGVTDPHNLGACLRCADAAGVHA-VIV-PRDRAAPLNATAKKVASGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             +  +RV +             A T R    +N   V    EA   L +   +G  + +
Sbjct: 147 ETVPLIRVTN------------LARTLRLLQEHNVWIVGTAGEADHHLYQSKLTG-PLAL 193

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + G E  G+        + +IS P+     SLN+S A  + ++E +      
Sbjct: 194 VMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLFEAVRQRWQK 245


>gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
 gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L]
 gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
 gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0488]
 gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0442]
 gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0193]
 gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0465]
 gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0389]
 gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0174]
 gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
 gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
 gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
 gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus
           Q1]
 gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB102]
 gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CDC 684]
 gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0248]
 gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A1055]
 gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Western North America USA6153]
 gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Kruger B]
 gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Vollum]
 gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Australia 94]
 gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI]
 gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Ames]
 gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC
           10987]
 gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
 gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Sterne]
 gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family
           [Bacillus cereus E33L]
 gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0488]
 gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0193]
 gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0442]
 gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0389]
 gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0465]
 gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0174]
 gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
 gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
 gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
 gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           cereus Q1]
 gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB102]
 gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CDC 684]
 gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0248]
 gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           cereus biovar anthracis str. CI]
 gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 247

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 99  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 204

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240


>gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46]
          Length = 248

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  ++  T A N  +++               + +  ++ I+ G E  G+
Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +       +  I  P+     SLN S A  LM++E         E
Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247


>gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925]
 gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           BKT015925]
          Length = 263

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R      +  + +   R+   +     +SA A   +   +V +
Sbjct: 116 ILILDEIEDPHNLGSIMRTAEICGVHGIIIPKRRNVGITPTVYKTSAGATEYMKVAKV-A 174

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  +I D+                  A         +  F G  V ++ G E  G++  
Sbjct: 175 NLNRSIDDI---------KEKGIWVYGADMAGESYCFQTNFKGA-VALVIGSEGRGISKL 224

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                + ++  P+     SLN S A  +M++E ++  + 
Sbjct: 225 TKEKCDVLVKVPMVGNITSLNASVAAGIMMYEVLKQKME 263


>gi|325962866|ref|YP_004240772.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468953|gb|ADX72638.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 303

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 69/181 (38%), Gaps = 11/181 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++ +     + +L   +   N G V RA  +     + L        + KA  S+A + 
Sbjct: 122 EEVLDGGPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTASSVDIYNPKAVRSTAGSL 181

Query: 66  CVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------ 118
             +  V + +++ E  A          A +     ++   ++ +        +G      
Sbjct: 182 FHLP-VVLGADVGELAAACRARGIGILAADGYGSLNLDTLQDESAR-RRLTGAGPSSTYA 239

Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             Q    +FG E  GL+ EE+AL++  ++ PV     SLN+  A  + ++    +  V +
Sbjct: 240 LEQPTAWLFGNEAQGLSEEELALADHRVAVPVYGSAESLNLGTAATVCLYASARSQQVPA 299

Query: 177 E 177
            
Sbjct: 300 A 300


>gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133]
          Length = 248

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   I+ V V  
Sbjct: 97  VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGA---IEHVPVIR 153

Query: 74  FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL + I DL     ++  T A N  +++               + +  ++ I+ G E 
Sbjct: 154 VTNLAKTIDDLKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEG 199

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            G++       +  I  P+     SLN S A  LM++E         E
Sbjct: 200 QGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247


>gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8]
 gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8]
          Length = 263

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 24/174 (13%)

Query: 6   PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           PQL    + P  +L+  D Q   NIG + R      +  + L        S KA      
Sbjct: 104 PQLP-VPEQPEFVLMLEDIQDPGNIGSMLRTAAASGVDVVYLSTSCTDVWSPKALRGGQG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A  V+  V     L  A+ +     YAT  +  + +   L+                   
Sbjct: 163 AQFVLPIVERVD-LINALQEFDGNSYATAMQGESLYAQDLS---------------APTA 206

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENS 172
            + G E  GL  + +A ++  I+ P+         SLN   A  + ++E M  +
Sbjct: 207 FVIGNEGAGLRKQTMAATSKRITIPMANTALGSVESLNAGAAAAVCLFERMRQA 260


>gi|254411771|ref|ZP_05025547.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
 gi|196181493|gb|EDX76481.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
          Length = 306

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC----VIDSVRVFSNLK 78
           Q   N+G + R      +  L L +P            ++        +  +  +   ++
Sbjct: 160 QDPGNLGTIIRTATAAGVDGLWL-SPDSVDLENPKVLRASAGQWFRLPISANANLSQVVR 218

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           ++ A    + AT        K+ L+  E    +           I+ G E  GL++E   
Sbjct: 219 QSQAQGVQVVAT------LPKAPLSYWEIDWRI--------PTLILLGNEAAGLSSELTV 264

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L++  +  P+     SLN++ A  L+V+E +   +  + 
Sbjct: 265 LADQAVQIPLGQDVESLNVAIAAALIVYEALRQRVGGTG 303


>gi|307106389|gb|EFN54635.1| hypothetical protein CHLNCDRAFT_17312 [Chlorella variabilis]
          Length = 195

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 15/142 (10%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G +AR    FN+ QL LV  R           +  +   +D    ++ L E   DL 
Sbjct: 11  HNLGTLARCATAFNVRQLCLVGSRQF-----NTFGAHGSSEYVDFCH-YNTLDECCQDLK 64

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T              + A  ++   F G N   + G E  GL  +++AL ++ + 
Sbjct: 65  DNKGCTVVGVEII-------DGAQPVHRFPFRG-NTAFMLGNEGQGLNEKQLALCDSFLY 116

Query: 146 FPVNPL-FPSLNISQAVLLMVW 166
            P       SLN++ A  +++ 
Sbjct: 117 IPQYGAGTASLNVAVAASIVLH 138


>gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
 gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 198

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 50  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 109

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 110 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 155

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 156 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 191


>gi|172037390|ref|YP_001803891.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
           ATCC 51142]
 gi|171698844|gb|ACB51825.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
           ATCC 51142]
          Length = 219

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 25/177 (14%)

Query: 7   QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           ++    +  + +L +      N+  + R      +  +  +N  D +P+    S  +   
Sbjct: 13  EVLEKRQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPT---FSQVSQGS 69

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQ 119
                +    N++ AI  L             FK        A  L ++          Q
Sbjct: 70  DKWIFLHTHPNIQTAINHL---------KSKKFKIY------AAHLTDKSVDYRDIDYTQ 114

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              ++ G E+WG++ E  +L +  I  P+  +  SLN+S A  ++++E     +   
Sbjct: 115 PTALLLGAEKWGVSEEAASLVDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQRLQKK 171


>gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
           ureae ATCC 25976]
 gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
           ureae ATCC 25976]
          Length = 247

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 20/174 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L       ++IL       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 89  LSQKQNPFLLILDGVTDPHNLGACLRTADVAGV-DAVIV-PKDKSAQLTSTARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  +RV +             A T R    ++N   V    EA   + +   +G  + 
Sbjct: 147 ETVPLIRVTN------------LARTMRELQEQHNIWIVGTAGEATSGIYQAKLTGA-IA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   + + 
Sbjct: 194 LVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAAQ 247


>gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 275

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 29/157 (18%)

Query: 27  NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKE---- 79
           N+G + R  A  N       LV P    P   +A   S      +   ++ +   +    
Sbjct: 134 NVGAIFRSAAALNM---DAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPEN 190

Query: 80  ------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                 A+       A + R+               + +  + +   + I+ G E  GL 
Sbjct: 191 GSAQLHALGFKTAAMALSDRS-------------VSIDDAALAAEPKLAIVLGTEGDGLA 237

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           N  IA  +  +  P++    SLN++ A  +  W+   
Sbjct: 238 NSTIAACDYTVKIPMSHGVDSLNVAAASAVAFWQLGR 274


>gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5]
 gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum
           indicum S5]
          Length = 228

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 26/163 (15%)

Query: 16  VIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN------ADCVI 68
            I+L    Q   N+G + R+   F    + +   +    S+    +SA          V+
Sbjct: 82  CIVLADRVQDPGNLGAIIRSAAAFG-ADVVITEHQSAPISDTVIKASAGNIYHTRVGRVV 140

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++ R     KE                N F +V    E   +   ++     + ++ G E
Sbjct: 141 NAARYVEKAKE----------------NGFWTVALDGEGESLFRLKL--DGKILLMVGNE 182

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             GL +  +  ++   S P+ P   SLN S A  + ++E    
Sbjct: 183 GSGLKDILLRHADWRASIPMRPGVESLNASAATAIALYEIARQ 225


>gi|264680077|ref|YP_003279986.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           CNB-2]
 gi|262210592|gb|ACY34690.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           CNB-2]
          Length = 164

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 23/177 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-DSVRVFS 75
           I+LV P++  N G V R   N   + L L+ P  G+  E      A  D     +V   +
Sbjct: 4   IVLVAPEIPPNTGNVIRLAANTGCS-LHLIEPL-GFSMEDRHMRRAGLDYHEYANVARHA 61

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +         ++A T    ++     A +  A              ++FG E  G
Sbjct: 62  SWDAFLETCQPQRERMFAMTT---HSSSPAHAMEFKAGDW-----------LVFGSESKG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           L  E  A       +  P+     SLN+S AV + V+E       +     + +   
Sbjct: 108 LPPEVRAQFPNEQRLRLPMLASQRSLNLSNAVAVTVFEAWRQQGFAGAALAEPKTAL 164


>gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON]
 gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis
           50-1 BON]
          Length = 249

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G + R         + +   R    +     +SA A   I    V +    ++   
Sbjct: 111 PHNMGAIIRTAECMGAHGIIIPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLK 170

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            D  +I     R R       +                 +G+I G E  G+        +
Sbjct: 171 KDGLWIMGADMRGR----PCRSMDLKGP-----------IGLIIGGEGSGIRRLVKEKCD 215

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++S P++    SLN S A  ++++E     +
Sbjct: 216 VLLSIPMSGHIASLNASVAAGMLMYEISMQRL 247


>gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 260

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 15/154 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKE 79
           Q   N+G + R+   F    + L +      + K   +S  A     VI++      + +
Sbjct: 119 QDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMGATVRIPVIEA----GAMPD 174

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           AI        T  R +       A  ++  +   +      V ++ G E  GLT+E IA 
Sbjct: 175 AI--------TQLRAKGITCLAAALYKSQPLSAAQASYPGGVCVVIGSEGQGLTDETIAA 226

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++ +  P+     SLN   A  +++W   E S+
Sbjct: 227 CSSTVRIPMTDRVESLNAGIAGSILLWHFREESL 260


>gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 245

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 97  ILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLA 156

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++S+                   + ++ G E  G+  
Sbjct: 157 RTMDELKERGVWIVGTDAKAKEDYRSL--------------DGTMPLALVIGSEGKGIGR 202

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +   + +I  P+     SLN S A  L+++E         E
Sbjct: 203 LILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 245


>gi|15805267|ref|NP_293955.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6457905|gb|AAF09819.1|AE001885_3 RNA methyltransferase, putative [Deinococcus radiodurans R1]
          Length = 158

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           ++L +P+   N+G VAR        +L L+ P      ++    +      +  V +   
Sbjct: 13  VVLFEPEKAGNVGNVARTCSVLG-AELHLIRPFGFHLHDREFRRAV--MDYLQGVTLHEY 69

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               + +  + D   ++A +                A   + R    +   ++FG E  G
Sbjct: 70  AGWSDFQAQLPDAARVFAFST--------------HATEYHTRAGFKRGDYLLFGPESRG 115

Query: 132 LTNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    + L +A+  +  P      SLN+S AV    +E    
Sbjct: 116 LP---VWLRDALPKLKLPQPGRGRSLNLSVAVGAAAFEAGRQ 154


>gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
           9941]
 gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
           9941]
          Length = 237

 Score = 62.0 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 17/163 (10%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVID 69
           + P++ +L       N+G V RA          +V P+D     +  A  +SA A   + 
Sbjct: 84  ENPLVAVLDGVTDPRNLGAVLRAAD--GAAASGVVVPKDRAAGVTPAAVKASAGASEHVR 141

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             RV +NL+ A+           R +     V A +       E   SG  V ++ G E 
Sbjct: 142 LARV-TNLRRAVD----------RMKEEGLWVYAAEPGGENYAEADLSG-PVALVLGSEG 189

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+        + ++S P+     SLN+S A  ++++E     
Sbjct: 190 RGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLYEARRQR 232


>gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 251

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           ++    + +N     ++IL       N+G + R     N+T + +   R    +     +
Sbjct: 91  LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150

Query: 61  SANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           S  A   +   RV +    L   + D  F I+ T                     ++   
Sbjct: 151 STGAVEHVPIARVTNLSQTLDT-LKDKDFWIFGT--------------DMNGTPSHKWNT 195

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G  + ++ G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 196 KG-KLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 251


>gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           limnophilus DSM 3776]
 gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           limnophilus DSM 3776]
          Length = 271

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANAD 65
            Q      ++IL   Q   N+G + R         + L  P  G    + +A  SSA A 
Sbjct: 115 FQAQLPALLVILDGIQDSFNLGAIIRCAEALGAGGIVL--PEKGQSGVNSQAARSSAGAV 172

Query: 66  CVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +  +     L  AI  L      I A T ++  +  +V+ P                +
Sbjct: 173 NFLP-IYRVPALDRAIDQLKSRGMKILAATEKSEQSLWNVVIP--------------APL 217

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +I G E  G+++  ++  +  +  P+     SLN + A  +++ E    S+
Sbjct: 218 CLIIGNEGKGVSSALLSACDIQVRIPMAGQTSSLNAAVAAGILLAEIQRQSL 269


>gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316]
 gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 249

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           ++    + +N     ++IL       N+G + R     N+T + +   R    +     +
Sbjct: 89  LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 148

Query: 61  SANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           S  A   +   RV +    L   + D  F I+ T                     ++   
Sbjct: 149 STGAVEHVPIARVTNLSQTLDT-LKDKDFWIFGT--------------DMNGTPSHKWNT 193

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G  + ++ G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 194 KG-KLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 249


>gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae COH1]
 gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 515]
 gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 515]
 gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae COH1]
          Length = 251

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           ++    + +N     ++IL       N+G + R     N+T + +   R    +     +
Sbjct: 91  LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150

Query: 61  SANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           S  A   +   RV +    L   + D  F I+ T                     ++   
Sbjct: 151 STGAVEHVPIARVTNLSQTLDT-LKDKDFWIFGT--------------DMNGTPSHKWNT 195

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G  + ++ G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 196 KG-KLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 251


>gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
 gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
 gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
 gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
          Length = 198

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 50  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 109

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 110 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 155

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 156 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 191


>gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
 gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
          Length = 254

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 23/166 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDS 70
              +++L   Q   N+G   R           +V P+D     +  A   ++ A   +  
Sbjct: 101 NALILVLDGVQDPHNLGACLRVADAAGAH--AVVAPKDRAVGLNATAAKVASGAADTVPY 158

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           + V +NL  A+ ++     ++                    A     ++     +  + G
Sbjct: 159 ITV-TNLARALREMQEAGVWVVGAAG--------------EAEKSVYQVDQRGPLAWVLG 203

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GL        + +   P++    SLN+S A  + ++E     
Sbjct: 204 AEGDGLRRLTRDTCDELAQIPMHGSVESLNVSVASGICLFEARRQR 249


>gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           AH1134]
 gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
 gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           AH1134]
 gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
 gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
          Length = 247

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 99  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGTMPIGLVIGSEGKGMSR 204

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240


>gi|227505320|ref|ZP_03935369.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198022|gb|EEI78070.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 156

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+  +P +  N G   R       + L L+ P      +K    +      +  +++  +
Sbjct: 6   IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADLQIHKD 64

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +A L    ++A T      F  V                 +   ++FG E  GL  
Sbjct: 65  FDACMAALPGARVFAFTTHTDKWFTDVEF--------------QEGDVLLFGTEPTGLPP 110

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +        +  P+ P   S+N+S A    V+E    
Sbjct: 111 EHVNHPRITEQVRIPMVPARRSMNLSNAASTAVYEAWRQ 149


>gi|212712554|ref|ZP_03320682.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
           30120]
 gi|212684770|gb|EEB44298.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
           30120]
          Length = 167

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 33/173 (19%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I+L +P++  N G + R   N   + L L++P      +K    +      +D    +
Sbjct: 2   PHIVLFEPEIPPNTGNIIRLCANTGFS-LHLIHPLGFTWDDKRLRRAG-----LD----Y 51

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------------ 122
           S   + I   H  YA            L P         R+F+    G            
Sbjct: 52  SEFAD-IKHHHDYYAF------LESEGLNPDNNQSPTGARVFALTTKGKPSHSNVSYRED 104

Query: 123 --IIFGRERWGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++FG E  GL    +        I  P+     S+N+S +V ++V+E    
Sbjct: 105 DYLMFGPETRGLPPYVLDNMPIEQKIRIPMLAESRSMNLSNSVAVVVFETWRQ 157


>gi|15639048|ref|NP_218494.1| hypothetical protein TP0054 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025288|ref|YP_001933060.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322312|gb|AAC65050.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017863|gb|ACD70481.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059469|gb|ADD72204.1| RNA methyltransferase, TrmH family [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 319

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 22/193 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVF 74
           V++L       N+G + R+   F +  L + + R     +      +      +  +R  
Sbjct: 119 VVLLDRVGDAHNLGAIIRSAAFFGVHSLVVSDCRQQAQVTSATYRVAQGGMEFVQLLR-C 177

Query: 75  SNLKEAIADL----HFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +N +E +         + A+    R+     ++L+P+E              V ++ G E
Sbjct: 178 TNAQEVLEMCAGKMTRVGASPHAFRSLTRLSNILSPEE-------------AVILVLGNE 224

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
             GL+    A  + +     +    SLN++QA  L +   ++      +     + TP  
Sbjct: 225 ETGLSEHLTAHCDHLCRIAGSGQVESLNVAQAGALFLSTIVQLRQSPQDYTQGHRATPRA 284

Query: 189 KGELLSFLDYLEI 201
           +  +      LE 
Sbjct: 285 QERVHRC-GQLEE 296


>gi|119357014|ref|YP_911658.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354363|gb|ABL65234.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 224

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 74/194 (38%), Gaps = 23/194 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA-- 82
             N+  + R+     + ++  V+ R      +  +++A     ++ V +  ++   ++  
Sbjct: 19  AHNLSAIIRSCDAVGIHEIHAVSYRKNIFDRQ--TAAAGTTRWVE-VTLHQSITSGLSMI 75

Query: 83  ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
               +  + A+ +    +F+S+   +                 +I G E  G++ E +  
Sbjct: 76  AGRGMQILAASGSSKNVDFRSIDYTR--------------PTALILGAEWDGVSTEALEA 121

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL-LSFLDY 198
           ++  IS P++ +  SLN+S A  ++++E       +   +       +    L  +    
Sbjct: 122 ADHHISIPMHGMIESLNVSVAAAVILFEAERQRTAAGMYSRPMLEKESFDRLLFENAYPR 181

Query: 199 LEISLEERGYFRPV 212
           L   L E+G   P 
Sbjct: 182 LGRILREKGLPYPE 195


>gi|292489188|ref|YP_003532075.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|291554622|emb|CBA22290.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
          Length = 344

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 15/171 (8%)

Query: 3   PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P +  L  S +   ++ L D     N+G + R+  +F    L LV+      S  A  ++
Sbjct: 185 PVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243

Query: 62  -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A+ V           +AI+   F     A  +  +  V       + L+        
Sbjct: 244 EGGAEHV-----------QAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELP-AR 291

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + ++ G+ER GL++      +  +S        SLN+S A  +++ E    
Sbjct: 292 MVLVLGQERDGLSDSSFQQGDLSVSIGGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|262183803|ref|ZP_06043224.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 156

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+  +P +  N G   R       + L L+ P      +K    +      +  +++  +
Sbjct: 6   IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFEDKHLKRAGLDYHDLADLKIHKD 64

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+ D   ++A T      F  V                 +   ++FG E  GL 
Sbjct: 65  FDACMEALPD-ARVFAFTTHTEKWFTDVEY--------------QEGDVLLFGTEPTGLP 109

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E          +  P+ P   S+N+S A    V+E    
Sbjct: 110 EEHAFHPRVTERVRIPMMPARRSMNLSNAASTAVYEAWRQ 149


>gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
          Length = 248

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  ++  T A N  +++               + +  ++ I+ G E  G+
Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +       +  I  P+     SLN S A  LM++E         E
Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247


>gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
 gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
          Length = 247

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 99  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 204

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240


>gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
 gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9765]
 gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
 gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9765]
 gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 248

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +  ++  T A N  +++               + +  ++ I+ G E  G+
Sbjct: 157 LAKTIDELKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +       +  I  P+     SLN S A  LM++E         E
Sbjct: 203 SRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247


>gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
           radiotolerans SRS30216]
 gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
           radiotolerans SRS30216]
          Length = 321

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 18/176 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M        +     V+ L       N+G V R++  F    + +   R    +  A  +
Sbjct: 160 MDLLDRAADSGRPALVVALDGVTDPRNLGAVVRSVAAFGGHGVVVPERRAAGMTASAWKT 219

Query: 61  SANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           SA A       R  +NL  AI +      F+    A             E  ++L +   
Sbjct: 220 SAGAAARTPVAR-ATNLVRAIEEYQKAGLFVVGLDA-------------EGDVLLPQLKL 265

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   + ++ G E  GL+       + ++S P+   F SLN   A  + ++E   + 
Sbjct: 266 ADGPLVLVVGAEGAGLSRLVREKCDQVVSIPMAGAFESLNAGVAAGIALYEVARHR 321


>gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 247

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      +    +V P+D     +  AR  +  A   +  +RV +
Sbjct: 99  ILDGVTDPHNLGACLRTADAAGV-DAVIV-PKDKSAQLTSTARKVACGAAETVPLIRVTN 156

Query: 76  NLKEAIADLHFIYATTARN---RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                        A T R    ++N   V    EA   + +   +G  + ++ G E  G+
Sbjct: 157 ------------LARTMRELQEQHNIWIVGTAGEATSGIYQAKLTGA-IALVMGAEGDGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + +IS P+     SLN+S A  + ++E +   + + 
Sbjct: 204 RRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQKLAAQ 247


>gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396]
 gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396]
          Length = 238

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 15/160 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+     +    +V P+D     +  AR  +  A  V   +RV +
Sbjct: 92  VLDGVTDPHNLGACLRSANAAGVHA-VIV-PKDKSAPLNAAARKVACGAAEVTPLIRV-T 148

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL   +  +                ++     A     +     +V I+ G E  G+   
Sbjct: 149 NLARTLKHIQ----------TYGVWLVGAAGEAEQSLYQADLKGSVAIVMGAEDKGMRRL 198

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                +++++ P+     SLN+S A  + ++E +      
Sbjct: 199 TRENCDSLVNIPMLGEVSSLNVSVATGVCLFEAVRQRQAG 238


>gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
 gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
          Length = 248

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL +     N G + R     N+T + +   R    +     +S  A   I   R
Sbjct: 100 NPLLLILDELNDPHNFGSILRTADATNVTGIIITKHRAVGVTPVVAKTSTGAVEHIPIAR 159

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +NL +A+  L     +I+ T                      +   SG  + +I G E
Sbjct: 160 V-TNLGQALDKLKAAGFWIFGT--------------DMNGTPSTQWNTSG-KLALIIGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+++      + +++ P+N    SLN S A  ++++E   N 
Sbjct: 204 GRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|323449932|gb|EGB05816.1| hypothetical protein AURANDRAFT_72107 [Aureococcus anophagefferens]
          Length = 1088

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 11  SAKGP-VIILVD-PQLGENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANAD 65
            A GP  ++L +     +N+G V R    F      +V      D +  +  R S  +A 
Sbjct: 138 PATGPSTVVLCERTNNLDNVGAVFRNGAAFGAG--AVVFDGRSADPYYRKSIRVSGGHAL 195

Query: 66  CVI--DSVRVFSNLKEAIADLHFIYA-----TTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            +       +   ++ A A  H + A     T+AR+     +V AP        +     
Sbjct: 196 AIPFTRRGSIADVVQAAKASGHVVCALVTPPTSARSTAVDDAVGAPVPINEWRADD--RP 253

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + V ++ G E  GLT+E   L++  ++ P+     S+N++ A  + + E 
Sbjct: 254 ERVAVLMGAEGPGLTDEAQRLADVRLTIPMANAVDSVNVATACSIALHEL 303


>gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
 gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
          Length = 212

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 64  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 124 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 169

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 170 IIGEKCDFLIHLPMVGKVTSLNASVAASLLMYEVYR 205


>gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
 gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
 gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
 gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
 gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
 gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
 gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
 gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
 gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 161

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 13  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 72

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 73  RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGTMPIGLVIGSEGKGMSR 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 119 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 154


>gi|150025852|ref|YP_001296678.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772393|emb|CAL43873.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 217

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 12/139 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F + +L ++  R G   +K  +    A   +D +  F ++   I    
Sbjct: 44  HNTSAVMRSCEVFGIQELNVIEERYGKSIDKEIAM--GAQKWVD-INTFDSVTNCIE--- 97

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                + +N+        P E    L E     +   + FG ER GL+ E +  ++  + 
Sbjct: 98  -----SLKNKGYQIIATTPHEN-DCLLEDFDISKPSALFFGTERDGLSEEILKQADGFLK 151

Query: 146 FPVNPLFPSLNISQAVLLM 164
            P+     SLNIS +  ++
Sbjct: 152 IPMVGFTESLNISVSAAII 170


>gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama]
 gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu
           str. Miyayama]
          Length = 243

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 30/181 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
             P+L++     S +  VIIL       NIG + R+   F +  L +   ++     +  
Sbjct: 79  SQPELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAFGVDALVV---KERHSPSETS 135

Query: 59  SSSANADCVIDSVRVF--SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLN 112
             +  A   ++S+ V   +NL  A+  L     F YA     R+    +  P        
Sbjct: 136 VIAKTASGALESIPVCTIANLTNAVKILQENGYFCYALDGGARSKLTEIRFP-------- 187

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV--NPLFPSLNISQAVLLMVWECME 170
                   V  + G E  G+++      +  +S P+  +  F S+N+S A  + ++    
Sbjct: 188 ------NKVAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMFRFYS 241

Query: 171 N 171
            
Sbjct: 242 A 242


>gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 286

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R +       + LV       S +   ++  +   +   R    
Sbjct: 133 VALDRVRDPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRATMGSVFSVPLARA--- 189

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNE 135
             EA        A  A   +    ++       V    + +SG  V ++ G E+ GL ++
Sbjct: 190 -DEA--------AFLAWREHFAGLMVGTHLKGSVDYRNVDYSGGPVLLLMGNEQQGLPDK 240

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
                + ++  P      SLN++ A  +M++E    ++ +S    
Sbjct: 241 LAEACDRLVRIPQAGRADSLNLAVATGVMLYEIRRTALPASHGTP 285


>gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2]
          Length = 245

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 23/171 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L   +K  +++L       N+G   R      +    +V P+D     +   R  +  A 
Sbjct: 91  LDKESKPLLLVLDGITDPHNLGACLRTADGAGVH--AVVVPKDKSASLNGTVRKVACGAA 148

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            VI  ++V +NL   +  L     +I  T        K++             I      
Sbjct: 149 EVIPLIQV-TNLARTLKHLQDKGLWIVGTAG---ETDKTLYD-----------IKLDGPT 193

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 194 ALVMGAEGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLYEIVRQR 244


>gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 247

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 99  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 204

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240


>gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
 gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
 gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 161

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 13  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 72

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 73  RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 118

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 119 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 154


>gi|15677017|ref|NP_274169.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|15677053|ref|NP_274205.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|7226378|gb|AAF41528.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|7226416|gb|AAF41563.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
          Length = 203

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 28/172 (16%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A G  ++L   Q   N+G V R+     +  + L        S K   +   A  +   
Sbjct: 51  PAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFL--- 107

Query: 71  VRVFSNLKEAIADLH--------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             ++       ADL          ++AT  R                 L E         
Sbjct: 108 SEIYPQ-----ADLEIWLVRYKGRVFATALREEKQ------AVLYGEDLCE------PTA 150

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +FG E  G+    +  ++  +  P++    SLN++ A  + ++E M     
Sbjct: 151 WVFGNEGAGVGKAVLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRAA 202


>gi|68536793|ref|YP_251498.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411]
 gi|260579148|ref|ZP_05847040.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC
           43734]
 gi|68264392|emb|CAI37880.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411]
 gi|258602747|gb|EEW16032.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 171

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 24/152 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++   P++  N G   R       + L L  P      +K    +      +  V V   
Sbjct: 16  VVFDRPEIPPNTGNAIRMCAGTGAS-LHLAGPLAFKFDDKHVRRAGLDYHELADVHVHEG 74

Query: 77  LKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + EA+A +         ++A TA+    F  V                     ++FG E 
Sbjct: 75  IDEALAHVTDPARGSGRVFAFTAQTGTWFTEVDY--------------QPGDVLLFGPEP 120

Query: 130 WGLTNEEIA--LSNAIISFPVNPLFPSLNISQ 159
            GL +E +A     A +  P+ P   S+N+S 
Sbjct: 121 TGLADEVLADPRVTAKVRIPMLPGRRSMNLSN 152


>gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
 gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
 gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
 gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
 gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 175

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 27  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 86

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 87  RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 132

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 133 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168


>gi|242310426|ref|ZP_04809581.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239522824|gb|EEQ62690.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 228

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 22/153 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       N+G + R+ +   +  + +   +D +  E    +S+ A   +    V +
Sbjct: 85  VLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIKD-FKQEGVLRASSGAMLGMPFCVVHN 143

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            L + I +L      ++ T+ + ++                +   SG+   +  G E  G
Sbjct: 144 PL-DVINELKQSDFTLFGTSMQGKDL---------------QNALSGKK-ALFLGSEGHG 186

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           L+N+ +A  +  ++ P+   F SLN+  A  ++
Sbjct: 187 LSNKILAKMDYNLTIPMKREFDSLNVGVAGAIL 219


>gi|110597360|ref|ZP_01385647.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
 gi|110340904|gb|EAT59375.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
          Length = 180

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R      + ++ L       P ++   ++  A   +        L         
Sbjct: 40  NVGSMFRTADAAGIEKMILSGYTATPPRKEIDKTALGAQDSVAWEYHADPL--------- 90

Query: 87  IYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
             A +A  R   K   L   E +   +        + ++ G E  GL NE + L + ++ 
Sbjct: 91  -VALSALKRAGVKICGLEITEGSRPYSALTPGDFPLCLVVGNEVDGLENELLELCDEVLE 149

Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170
            P      SLN++ A  + ++E + 
Sbjct: 150 IPQYGTKHSLNVAVASGIALFEFVR 174


>gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 248

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 23/168 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   I+ V V  
Sbjct: 97  VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGA---IEHVPVIR 153

Query: 74  FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL + I DL     ++  T A N  +++               + +  ++ I+ G E 
Sbjct: 154 VTNLAKTIDDLKDNGFWVAGTEANNATDYR--------------NLEADMSLAIVIGSEG 199

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            G++       +  I  P+     SLN S A  LM++E         E
Sbjct: 200 QGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHDVGE 247


>gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 248

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A         PV++L +P+   N G V R    F  T +      D W     R  +   
Sbjct: 98  ARLAHTPRTAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTVDPWHPTVVRGGAG-- 155

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +        L+ A               +     L   +             +  + 
Sbjct: 156 ---LHFATAVERLEVA---------------DLPAGPLFALDPEGDDIRSTKLPDDAVLA 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           FG ER GL+ E  A ++ ++S P+ P   S N++ +V + ++  
Sbjct: 198 FGSERTGLSPELRARADHLLSLPMRPQVSSYNLATSVAMTLYHW 241


>gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 257

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 16/164 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73
           ++IL       NIG + R    FN+  L L  P +  PSE A    +++ A  ++  + V
Sbjct: 107 IVILDQVTDTHNIGSILRTSACFNVNALVL--PHNHSPSENASIAKAASGALDIVPLIYV 164

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGL 132
            +           I  T    +            A    + I S +    IIFG E  G+
Sbjct: 165 TN-----------IVKTMQYLKKVGYWCYGFDCNAKENIDEIKSLEKKRVIIFGSEEKGM 213

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + ++  P++ +  SLN+S A  + ++     +  S+
Sbjct: 214 RRLVKENCDYLLKIPISNVIDSLNVSNAAAIGLYSIYIKTNASA 257


>gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 282

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 63/175 (36%), Gaps = 15/175 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++  +    V +L   +   N G V R         + L +      + KA  +S  +  
Sbjct: 112 EILAARPKLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLF 171

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----G 122
            +        ++ A+A L          R     VLA   A     +    G  +     
Sbjct: 172 HLPVAVGVP-VERAVAGL----------REAGVRVLAADGAGEDDLDTELDGGTMRGPTA 220

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            +FG E WGL  E  AL++A++  P++    SLN++ A  + ++        +  
Sbjct: 221 WVFGNEAWGLPEETRALTDAVLRVPIHGKAESLNLATAAAVCLYASARAQRAAGG 275


>gi|256846965|ref|ZP_05552411.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715629|gb|EEU30604.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 169

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 46/175 (26%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P    N G +AR     N   T L L+ P      +K    +       D V+V 
Sbjct: 5   IVLFEPLFPANTGNIARTCAGTN---TVLHLIKPLGFSTDDKHMRRA--GLDYWDKVKVV 59

Query: 75  -----SNLKEAIADLHFIY-----ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                 +  + + DL  +Y     AT    R+                       +   +
Sbjct: 60  YHDDLPSFIQTVPDLKHLYIVSKFAT----RDYTDVDYT-------------ESGDHYFL 102

Query: 125 FGRERWGLTN------EEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172
           FG+E  GL         E+A     I  P N     +LN+S +  ++++E +   
Sbjct: 103 FGKETTGLPEPFMRKYPELA-----IRIPQNDQNIRALNLSNSAAIIIYEALRQQ 152


>gi|260903735|ref|ZP_05912057.1| rRNA methylase [Brevibacterium linens BL2]
          Length = 147

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 22/141 (15%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSN 76
              N+G + R+   F +    LV PR   P   ++   S      +   R+        +
Sbjct: 8   HHINVGAIFRSAAAFGV-DAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIESWPAGVDS 66

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+E    L F  A  A      +  +A ++ A    ER        I+FG E  GL    
Sbjct: 67  LRE----LGFHVAALA----LEQDSVAIRDFAANAPER------TAIVFGTEGDGLRRST 112

Query: 137 IALSNAIISFPVNPLFPSLNI 157
           IA  ++ +  P++    SLN+
Sbjct: 113 IAACDSTVMIPMSGGVDSLNV 133


>gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
 gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
          Length = 175

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 27  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 86

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 87  RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 132

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 133 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168


>gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
           NRL30031/H210]
 gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
           NRL30031/H210]
          Length = 249

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P +++L       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               +V
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLYHCDLPD--------------SV 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + +IS P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249


>gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
           salmoninarum ATCC 33209]
          Length = 336

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 64/178 (35%), Gaps = 23/178 (12%)

Query: 13  KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVID 69
             P+I+ L       N+G + R++  F   Q  +V P  R    +  A  +SA A   + 
Sbjct: 174 NSPLIVALDGITDPRNLGAIIRSVSAFA-GQAVIV-PERRSVGLTASAWKTSAGAAVRVP 231

Query: 70  SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             R   NL  A+        F+                  +  + L     + + V I+ 
Sbjct: 232 VAR-AGNLNRALESFKGMGYFVLGLDG-------------DGDVSLPALAVAKEPVCIVV 277

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           G E  GL+       + I+S P++    SLN S AV + ++E        S +     
Sbjct: 278 GSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEIARQRSGGSAEQGNPS 335


>gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           HGF5]
 gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           HGF5]
          Length = 250

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 16/157 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L + +   N+G + R         + L   R    +     +SA A   +   RV +   
Sbjct: 103 LDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQ 162

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + +      ++  T          V+   +    L +       V I+ G E  G+   
Sbjct: 163 TIDQLKEMGVWVVGT----------VVDAVQ---ELYDTEVFDGPVAIVIGNENKGMGRL 209

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++  P+     SLN S A  ++++E +   
Sbjct: 210 IREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 246


>gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102]
 gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102]
          Length = 249

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P +++L       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ SEK
Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKSEK 249


>gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
 gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
 gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
 gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
          Length = 212

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 64  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 124 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 169

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 170 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 205


>gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus
           Ueda107]
          Length = 249

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 63/181 (34%), Gaps = 29/181 (16%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
            L  +   P  +LV        N+G   R+     +    ++ P+D     +  AR  + 
Sbjct: 88  SLLETLDEPPFLLVLDGVTDPHNLGACMRSAEAAGVH--AVIAPKDKSAGLTPVARKVAC 145

Query: 63  NADCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            A  V+      +  R    L+E    +    A    +++ +++ L              
Sbjct: 146 GAAEVLPFIPVTNLARTLKKLQE--KGIWLFGAAGEASQSLYQTRLT------------- 190

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + I+ G E  GL        + ++  P+     SLN+S A  + ++E +    V+ 
Sbjct: 191 --GPIAILMGAEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLFEAVRQRQVAP 248

Query: 177 E 177
            
Sbjct: 249 A 249


>gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 245

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 11/160 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R      +  + +   R    +     +SA A   +   RV +
Sbjct: 97  ILILDEIEDPHNLGSILRTADCTGVHGVIIPKRRSAGLTATVSKTSAGAVEYVPVARV-T 155

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL + I  L                       A  +    F    + ++ G E  G+   
Sbjct: 156 NLAQTIEQL---------KEKGIWVAGTDVNQAEDVYRSNFRM-PIALVIGNENKGVGRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + ++  P++    SLN S A  ++++E       S
Sbjct: 206 VKEKCDFLVKLPMHGQINSLNASVAAGVLMYEVARQRSSS 245


>gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846]
          Length = 245

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L N     +++L       N+G   R           +V P+D     +  AR  +  A 
Sbjct: 89  LANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA-VIV-PKDKSAQLTSIARKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  +RV +NL   + +L      ++  T                 A     +      
Sbjct: 147 ETVPLIRV-TNLSRTLRNLQQNHNIWVVGTAG--------------EATETIYQSKLTGP 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 192 LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQRL 244


>gi|332521339|ref|ZP_08397795.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043067|gb|EGI79265.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 152

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L++P++  N G + R       + L LV P     ++     +          ++  +
Sbjct: 5   IVLIEPEIPNNTGNIGRLALGSG-STLHLVKPFGFEITDTRLKRA--GLDYWQHLNLHYY 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N+++ +             +N  K ++         +  I    ++ ++FG+E  GL  
Sbjct: 62  DNIEDFLE------------KNKTKKMVFLSSHGTKQHWDIKFEDDLFLVFGKESKGLPK 109

Query: 135 EEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
              +   + +   P+ +    SLN++ AV ++V+E ++ 
Sbjct: 110 SLTSKHQDKLFKIPLYSEHIRSLNLANAVSIVVYEGLKQ 148


>gi|238918012|ref|YP_002931526.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238867580|gb|ACR67291.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 230

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 21/184 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  V R      + Q+  V P  G       S++A ++  + SV+   ++  A+ +L
Sbjct: 30  PHNVSAVIRTADAVGVHQVHAVWP--GKSMRTLVSTAAGSNSWV-SVKTHRDIAAAVGEL 86

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                         + +     A  V    I   +   I+ G+E+ G++ E + L++  I
Sbjct: 87  ---------KGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEALQLADRDI 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
             P+  +  SLN+S A  L+++E         +  +  ++ P+   E        +  L 
Sbjct: 138 IIPMVGMVQSLNVSVASALILYEAQRQR---QQAGMYGRSQPSLNEEQQ------QRLLW 188

Query: 205 ERGY 208
           E GY
Sbjct: 189 EGGY 192


>gi|237750840|ref|ZP_04581320.1| rRNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373285|gb|EEO23676.1| rRNA methylase [Helicobacter bilis ATCC 43879]
          Length = 160

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 37/169 (21%)

Query: 17  IILVDPQLGENIGMVARAM--WN-FNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           I+LV+PQ+ +N G + R     N      L L++P      EK    +         ++V
Sbjct: 7   IVLVEPQIPQNTGNIGRLCVAANAM----LHLIHPLGFSTKEKDLKRA--GLDYWQHLKV 60

Query: 74  FS--NLKEAIADLHFIYATTARNRNNFKSVLAPKE-------AAIVLNERIFSGQNVGII 124
           +   NL+                  +F     P          A  L           + 
Sbjct: 61  YEWANLE------------------SFWQTYTPDATHFFFSTKAKKLYFEADLKHGAFLY 102

Query: 125 FGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           FGRE  GL    +    N I   P+     S+N++ +   +++E +  S
Sbjct: 103 FGREDAGLPLHILESFKNQIYKIPMQKGVRSINLATSAGAVLYEAVRQS 151


>gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 237

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 19/171 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +    +  +++L   +   N+G + R         + +   R+   +      S  A 
Sbjct: 79  EAIPQGKQPLLVMLDGLEDPHNLGAILRTCDCIGADGVIIGKHRNVRLTPTVAKVSTGAI 138

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +  V V +NL +AI  L     ++  T      +F++    +E    +         +
Sbjct: 139 DTV-KVSVVTNLAQAIKYLKKQGYWVVGT------DFENSRDYREGQYDV--------PL 183

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E +G+++      +  +  P+     SLN S A  +++++     
Sbjct: 184 VLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQR 234


>gi|162449973|ref|YP_001612340.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56']
 gi|161160555|emb|CAN91860.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56']
          Length = 152

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 14/154 (9%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P++ +N G +AR       + L L+        E++   +      +D   +   L+
Sbjct: 2   LVEPEIPQNTGNIARLAAAT-QSPLHLLGRLGFRIDERSVRRAG-----LDYWHLV-TLE 54

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           + +   HF      R+ +    +      A              ++FG+E  GL  E +A
Sbjct: 55  QQLDIAHF------RHHHPNARLRLFSAVAPRSYLDADFRPGDALVFGKESVGLDPELLA 108

Query: 139 LS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + +   P      SLN++ AV ++++E +  
Sbjct: 109 RMPDDVFGIPTLGPVRSLNLANAVSIVLYEALRQ 142


>gi|227832337|ref|YP_002834044.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453353|gb|ACP32106.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 158

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+  +P +  N G   R       + L L+ P      +K    +      +  +++  +
Sbjct: 8   IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFEDKHLKRAGLDYHDLADLKIHKD 66

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+ D   ++A T      F  V                 +   ++FG E  GL 
Sbjct: 67  FDACMEALPD-ARVFAFTTHTEKWFTDVEY--------------QEGDVLLFGTEPTGLP 111

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E          +  P+ P   S+N+S A    V+E    
Sbjct: 112 EEHAFHPRVTERVRIPMMPARRSMNLSNAASTAVYEAWRQ 151


>gi|242279118|ref|YP_002991247.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM
           2638]
 gi|242122012|gb|ACS79708.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM
           2638]
          Length = 161

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 21/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L +P++  N G +AR     + TQL L+ P     S+K    +         V+  V+
Sbjct: 12  IVLFEPEIPPNTGNIARLCAGTD-TQLHLIEPLGFSISDKHLKRA--GLDYWPKVKLSVW 68

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N +E   +     +  T+A+   +                +   G +  ++ G E  GL
Sbjct: 69  KNWQEYKENAKPQRLVTTSAKRGTHLFEF------------KFLPGDH--LVLGPETRGL 114

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                      ++ P      SLN+S +  +++++ + 
Sbjct: 115 PEWMFDEFKHAVNIPTTDNVRSLNLSTSAGIILYQALS 152


>gi|77361707|ref|YP_341282.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876618|emb|CAI87840.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 228

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIA 82
            N+  + R+        +  V     WP  +   +   S  +   ++   +  N+ +A  
Sbjct: 31  HNLSAIVRSADAVGCHHVHAV-----WPENQKWLTNNTSGGSKNWLE-THLHKNIDDA-- 82

Query: 83  DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 AT  R RN    +LA      A+   E I   +   II G+E+ G++ + +  +
Sbjct: 83  ------ATAMRARNPDIQILATHLSTDAVDFRE-IDYTKPTAIIVGQEKTGISEQALKHA 135

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  I  P+  +  SLN+S A  L+++E      ++ 
Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQRQRELAG 171


>gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 246

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 17/166 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G +++L   +  +N+G + R      +  + +   R    +E     SA A   +   RV
Sbjct: 95  GLLLVLDGIEDPQNLGSLLRTADAAGVHGVIIPERRAVGLTETVAKVSAGAVEYVPVARV 154

Query: 74  FS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +    L+      +++  T               + A  L         + ++ G E  
Sbjct: 155 TNIARTLEMLKERGYWVVGTH--------------QEADELYYEARLTGPLAVVIGSEGR 200

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G++       +  +  P+     SLN + A  ++++E        +
Sbjct: 201 GMSRLVAETCDFTVRLPMRGHVTSLNAAVAGAILLYEVRRQRSAGA 246


>gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 272

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R+   F +    +V+PR   P   ++   S      +   R  S   +L + + 
Sbjct: 138 NVGALFRSAAAFGVDG-VVVSPRCADPLYRRSVRVSMGTVLHLPWARAASWPGDL-DLLR 195

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F  A  A   +             V        + + ++ G E  GL+   ++ ++ 
Sbjct: 196 SAGFAVAALALTED------------SVALGSFAVPERLALLLGTEGDGLSRRALSGADL 243

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  P++P   SLN++ A  + +WE    
Sbjct: 244 VVRIPMDPRVDSLNVAAASAVALWETRRA 272


>gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
          Length = 242

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +  A+  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKAEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9301]
          Length = 334

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 20/165 (12%)

Query: 9   QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +++   P+I+         N+G + R+   F+   + +   R    +      +A A   
Sbjct: 182 KHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALEH 241

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   RV  NL  A+ +L      +   +    +   S+   +E A ++           +
Sbjct: 242 LHVSRVV-NLNRALEELKKNGFLVVGLSG---DGQISISNFQEKAPLV-----------V 286

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + G E  G++       + I+S P+     SLN S A  + ++  
Sbjct: 287 VVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLYHL 331


>gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum
           lavamentivorans DS-1]
          Length = 288

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 11/158 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       N G + R+   F    L                +++ A  ++   R+ +
Sbjct: 142 VVVLDQVTDPHNFGAILRSAAVFGAGALITTERNSPSLGGVLAKAASGALELVRVARI-T 200

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  AI +L          +     V+            +     V ++ G E  GL   
Sbjct: 201 NLVRAIEEL----------KELGFEVVGLDGEGEASLPDLKLSPRVALVLGAEGAGLRRL 250

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                + +   P      SLN+S A  + ++E    ++
Sbjct: 251 TREHCDLLARLPAAGGMKSLNVSNAAAVALYELFRRNL 288


>gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum
           STM815]
          Length = 247

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T               EA   L E    G
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGIWVVGTAG-------------EATASLYETKLDG 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +    V  
Sbjct: 191 -PVALVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLFEAVRQRAVKK 247


>gi|289555644|ref|ZP_06444854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
 gi|289440276|gb|EFD22769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
          Length = 158

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 25/151 (16%)

Query: 34  AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---EAIADLHFIYAT 90
                   +L LV P     SE     +      + SV V ++L    EA++    ++A 
Sbjct: 25  TCAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAHAWEALSP-ARVFAF 82

Query: 91  TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS----F 146
           TA               A  L   +       ++FG E  GL  +E  L++  I+     
Sbjct: 83  TA--------------QATTLFTNVGYRAGDVLMFGPEPTGL--DEATLADTHITGQVRI 126

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           P+     SLN+S A  + V+E       +  
Sbjct: 127 PMLAGRRSLNLSNAAAVAVYEAWRQHGFAGA 157


>gi|259501039|ref|ZP_05743941.1| RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|302190512|ref|ZP_07266766.1| rRNA methyltransferase [Lactobacillus iners AB-1]
 gi|309804594|ref|ZP_07698659.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 09V1-c]
 gi|259167733|gb|EEW52228.1| RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|308165986|gb|EFO68204.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 09V1-c]
          Length = 170

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           ++L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5   VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRA--GLDYWDKVKINK 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L++ +A L       A +     S  + K    +  E     +N   +FG+E  GL 
Sbjct: 61  HDSLEDFLATLQ------ANDEMYLISKFSSKSYTDI--EYTDPTKNYYFVFGKETTGLP 112

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
              +       +  P++    + N++ +V ++++E +        +    
Sbjct: 113 KTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQGFPHLEQSHH 162


>gi|281356874|ref|ZP_06243364.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316432|gb|EFB00456.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 253

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 13/174 (7%)

Query: 3   PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P  P  +   + P +  L       N G V R + +  L +L           +KA  S 
Sbjct: 92  PAPPGEETPPEVPFIFALDGLGDPGNFGTVCRTLRSTGLDELWYTKGSIDPYGDKAIRSG 151

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                 +  +R F NL+        + A  AR     K  L                Q  
Sbjct: 152 LGVQFAL-KLRCFENLE-------TLRAAAARF-GYDKVFLTDPHQGESCFTAPDLFQRS 202

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            ++ G E  G+   ++A +   ++ P+   + SLN +QA  + ++E +     +
Sbjct: 203 VVVIGGEANGVN--DLAAARR-VTIPMPGNYESLNAAQAATVFLFEYVRRLTTA 253


>gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 247

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 18/161 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG +++L      +N+G + R      ++ + L   R    +E    +S  A   +   +
Sbjct: 96  KGILLVLDHITDPQNVGSIMRTAEILGVSGIILPKERSSPINEVVVKASTGAVFYLPIAK 155

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V S    L++      ++ A   +   N   +  P                + ++ G E 
Sbjct: 156 VGSLRNTLEKFKKKGGWVVAV-EKGGKNIHEIDFPF--------------PLALVVGSEG 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G++   +  ++ + S P+     S N+S A  + +WE  +
Sbjct: 201 KGVSKSVLEEADIVASIPMKGKITSFNVSNATAIALWEVFK 241


>gi|227544885|ref|ZP_03974934.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909895|ref|ZP_07127355.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185159|gb|EEI65230.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300892543|gb|EFK85903.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 169

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P    N G +AR     N   T+L L+ P      +K    +       D V++ 
Sbjct: 5   IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59

Query: 75  -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                 +  + I D++ +Y  +    +++  V    E             +   +FG+E 
Sbjct: 60  YHEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE------------GDHYFLFGKET 107

Query: 130 WGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172
            GL    +       I  P N     +LN+S +  ++++E +   
Sbjct: 108 TGLPERFMQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEVLRQQ 152


>gi|305665198|ref|YP_003861485.1| putative SpoU rRNA methylase family protein [Maribacter sp.
           HTCC2170]
 gi|88709950|gb|EAR02182.1| putative SpoU rRNA methylase family protein [Maribacter sp.
           HTCC2170]
          Length = 176

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 10/162 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      +++L + +   NIG V R    F + ++ L       P +  R ++  A   +
Sbjct: 19  KTEKTPIILVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAIPPHKDIRKTALGATESV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127
                   L E I +L           +   + +   + + +LNE  I       ++FG 
Sbjct: 79  SWEYRKDTL-ELIKELQ--------ADDCEIAAVEQADNSQMLNEFLIQKTSKYALVFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E  G++ E ++ S+ ++  P      SLNIS +  +++W+  
Sbjct: 130 EVKGVSQEVVSASDVVLEIPQFGTKHSLNISVSAGIVIWDFW 171


>gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
 gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
          Length = 288

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 26/168 (15%)

Query: 18  ILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74
           IL + Q   N+G + R  A  N    +  L++P    P   +A   S      I    + 
Sbjct: 129 ILENVQNPTNVGAIFRSAAALNM---EAVLLSPGCSDPLYRRASRVSMGTVFQIPWTFIR 185

Query: 75  SNLK-----------EAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            + +           +AIA+L    Y T A    +    +   E            + + 
Sbjct: 186 DSNEMRCKREVIWPKQAIAELKKLGYKTAALALTDDSVSIDDSELMKE--------EKLA 237

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +I G E  GL NE IAL +  +  P+     SLN++ A  +  W+  +
Sbjct: 238 VILGNEGEGLENETIALCDYTVKIPMTHGVDSLNVAAASAVAFWQLGK 285


>gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
          Length = 480

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 19/165 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G V R+        + L   R    +  A   +A A   +   RV +   +L E +
Sbjct: 280 PHNLGAVVRSAEAMGAHGVVLPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSL-EKL 338

Query: 82  ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            D  + +                  E  + L +   SG  V ++ G E  GL+       
Sbjct: 339 KDAGYRVIGLAG-------------EGDVTLPDVDLSGPLV-LVTGSEDQGLSLLTRRHC 384

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           + ++  P+  + PSLN S A  L V+E    + +           
Sbjct: 385 DQLVRIPLRGVTPSLNASVATALCVYEVARRNWMKDIHGQAPSPP 429


>gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
 gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
          Length = 380

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 22/152 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    LVN      S  A  ++   A+ V         L +A+A 
Sbjct: 243 PHNLGGIMRSCAHFGVKG-VLVNDASQLESGAAVRTAEGGAEHV--KAISAEGLVDALAQ 299

Query: 84  LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  I  T++        V  P                  I+ G+E  GL++     
Sbjct: 300 FRAAGYTIVTTSSHKGTTLSQVSLP--------------AKTVIVLGQEGDGLSDSAWQQ 345

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  +S        SLNIS A  +++ E    
Sbjct: 346 GDVKVSIDGTGNVESLNISVATGILLAEWWRQ 377


>gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
          Length = 283

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 34/163 (20%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+     +    LV P    P   +A   S      +   R+            
Sbjct: 136 NVGAIFRSAAALGI-DAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTG 194

Query: 74  ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                    L E +      +A T    ++   +  P   A          + + ++FG 
Sbjct: 195 GWAPDGVPLLHE-LGFKTAAFALT----DDSVPLDDPALNAE---------ERLALVFGT 240

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  GL ++ IA  +  +  P+     SLN++ A  +  W+   
Sbjct: 241 EGDGLAHDTIARCDYTVRIPMACGVDSLNVAAASAVAFWQLRR 283


>gi|255532027|ref|YP_003092399.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
 gi|255345011|gb|ACU04337.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
          Length = 176

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 19/170 (11%)

Query: 6   PQLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            + +   K P+I++   V      NIG V R    F + +L L       P  +   ++ 
Sbjct: 15  EEFKEQEKLPLIVVLDNVRSMH--NIGSVFRTADGFAIEKLYLCGITARPPHREIEKTAL 72

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQ 119
            A   +     F    +AIA L          + +   ++  ++AA        +    +
Sbjct: 73  GATQSVAWAH-FETTVDAIASL----------KADGYHIIGIEQAAGSTMLNTYKPTYSK 121

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              +IFG E  G+++E +A  +  I  P      S NI  +  +++W+  
Sbjct: 122 KYALIFGNEVNGVSDEVMAQIDECIEIPQFGTKHSFNIVISAGIVLWDFF 171


>gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
 gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
          Length = 284

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 26/177 (14%)

Query: 7   QLQNSAKGPVIILV---DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            L+  A  P  +LV     +   N+G V R         + LV       S +A  ++  
Sbjct: 124 PLERLAPKPNEVLVALDRVRDPGNLGTVLRTADAVGAKGVVLVGETVDPFSLEAVRATMG 183

Query: 64  ADCVIDSVRVFSNLKEA-----IADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +          S + EA      A     +  T      +++                 +
Sbjct: 184 SIF----AVPVSRVGEAAFIEWRAGCRAPLIGTHMSGATDYRKPDY-------------A 226

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +   ++ G E+ GLT+      + ++  P      SLN++ A  +M++E     + 
Sbjct: 227 SKGSVLVMGNEQAGLTDALANACDTLVRIPQVGRADSLNLAVATGVMLFEARRGILE 283


>gi|16331214|ref|NP_441942.1| hypothetical protein slr0992 [Synechocystis sp. PCC 6803]
 gi|3915412|sp|P74516|TRML_SYNY3 RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase slr0992
 gi|1653708|dbj|BAA18620.1| slr0992 [Synechocystis sp. PCC 6803]
          Length = 153

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 16/157 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75
           +LV+PQ+  N G +AR       T+L LV P      ++    +         V     +
Sbjct: 5   VLVNPQIPPNTGNIARTCAATG-TELHLVGPLGFELGDRYLKRA--GLDYWPYVDLHYHN 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + +E I   H+        R    ++L       V            ++ G E  GL   
Sbjct: 62  SCEEFIT--HW--------RGQGGNLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGLPQM 111

Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
              LS  ++  P+ +    SLN++ +  + ++E    
Sbjct: 112 MRDLSTQLLCIPMPHSEVRSLNLASSAAIALFEAGRQ 148


>gi|124267154|ref|YP_001021158.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124259929|gb|ABM94923.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 261

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 21/163 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLR-LVNPRDGWPSE--KARSSSANADCVIDSVR 72
            ++L   Q   N+G V R+     + Q+  L      W S+  +A   +  A  +++S  
Sbjct: 117 TVVLDRLQDAGNVGSVLRSAAALGVAQVVALKGTAALWSSKVLRAGMGAHFALHLVESAE 176

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +L                       +LA    A +           G + G E  G+
Sbjct: 177 V-GDLDA-----------------LGVPLLATSSHAGLALAEGRLPSPCGWVLGHEGQGV 218

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               +A  +     P      SLN++ A  + ++E +     +
Sbjct: 219 GKALLARCSETRRIPQPGGQESLNVAAAAAICLYESLRQRGSA 261


>gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 269

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 27/174 (15%)

Query: 7   QLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +L+   K P ++LV   P+   NIG + R     NL  + + NP+    +     SS   
Sbjct: 113 ELKFKNKNP-LVLVAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVGC 171

Query: 65  DCVIDSVRVFSNLKEAIADLH------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             V  +     N  E IA L       F  A TA       S   P              
Sbjct: 172 --VFTNPIATGNTTEIIAFLKENNINIFCAALTASKVYTNTSFKTP-------------- 215

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               I+ G E  GL+ E +  +   I  P+     S+N+S +  ++++E     
Sbjct: 216 --SAIVVGTEATGLSEEWLENATQNIIIPMEGEIDSMNVSVSAAILIFEAKRQR 267


>gi|309810015|ref|ZP_07703862.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312870678|ref|ZP_07730786.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 3008A-a]
 gi|312874347|ref|ZP_07734378.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2052A-d]
 gi|325911440|ref|ZP_08173852.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 143-D]
 gi|329920512|ref|ZP_08277244.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 1401G]
 gi|308169655|gb|EFO71701.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311090113|gb|EFQ48526.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2052A-d]
 gi|311093789|gb|EFQ52125.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 3008A-a]
 gi|325476790|gb|EGC79944.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 143-D]
 gi|328936188|gb|EGG32641.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 1401G]
          Length = 170

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 16/160 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           ++L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5   VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRA--GLDYWDKVKINK 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L++ +A L       A +     S  + K    +  E     +N   +FG+E  GL 
Sbjct: 61  HDSLEDFLATLQ------ANDEMYLISKFSSKSYTDI--EYTDPTKNYYFVFGKETTGLP 112

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +       +  P++    + N++ +V ++++E +   
Sbjct: 113 KTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQ 152


>gi|220912252|ref|YP_002487561.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219859130|gb|ACL39472.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 297

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 9/169 (5%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             + ++    + +L   +   N G V RA  +     + L        + KA  S+A + 
Sbjct: 122 ESVLDAGPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTGSSVDIYNPKAVRSTAGSL 181

Query: 66  CVID---SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----- 117
             +       V ++L EA               +     L  + A   L           
Sbjct: 182 FHLPVVLGAEV-AHLAEACKSRGIGILAADGYGSLNLDALQDENARRRLTGSGPDSAYDL 240

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G     +FG E  GL+  E+ L++  ++ PV     SLN+  A  + ++
Sbjct: 241 GGPTAWLFGNEAQGLSEAELELADHRVAVPVYGAAESLNLGTAATVCLY 289


>gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB108]
 gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB108]
          Length = 247

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 99  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 159 RTIDELKGRGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 204

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240


>gi|159489640|ref|XP_001702805.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280827|gb|EDP06584.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 153

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV PQ+ +N G VAR+      T L LV P       K    +       D+V V   
Sbjct: 1   IVLVHPQIPQNTGNVARSCAATG-TPLHLVGPLGFELDNKKLKRA--GLDYWDNVAV--- 54

Query: 77  LKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              A+       +A         + V           E  +   +  ++FG E  GL  +
Sbjct: 55  ---ALHSTWDHFFAAFINLPGPKRLVAFTVAGWDDTVEFTYQSGDW-LVFGAETSGLPPQ 110

Query: 136 EIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSE 177
              ++      P+ +    S+N++ A  + ++E +      +E
Sbjct: 111 VRPVTVRYARIPIRDTHVRSINLAVAAGIGLFEAVRQLDAGAE 153


>gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 235

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 12/153 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L      +N+G +AR + +F    + L        +E A  +S+ A   +  V    +
Sbjct: 94  VVLDRVTEPQNLGAIARTVESFGGVGILLPEKNSAPINEIALKASSGALFHL-MVSRVPS 152

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E++     +  +           +   E        I   + +G+I G E  G+    
Sbjct: 153 LNESLITFKKLGGS-----------IYAVETGGKDIRNINFQKPLGLILGSEGKGIEKNL 201

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           + LSN I+S P     PSLN+S A  + +W   
Sbjct: 202 LKLSNEIVSIPTVGKTPSLNVSVAAGIAIWSMF 234


>gi|255551565|ref|XP_002516828.1| rRNA methylase, putative [Ricinus communis]
 gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis]
          Length = 216

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 30/149 (20%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVRVFSNLKEAI 81
            N+G +AR+   F +T+L LV  R  + +  +  S+++        + + R    LKE  
Sbjct: 16  HNVGTLARSATAFGVTELILVG-RRDFNAFGSHGSTSHLRFRHFHSLLNAR--DYLKE-- 70

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            +                  +   + A+ +NE  F  ++   + G E  GL+ +E  + +
Sbjct: 71  KECDICG-------------VEITDGALPVNEHPFK-KSTAFLLGNEGTGLSAKECEICD 116

Query: 142 AIISFPVNPLFP----SLNISQAVLLMVW 166
             +  P    +     SLN++ A  +++ 
Sbjct: 117 FFVYIP---QYGRGTASLNVTVAASIVLH 142


>gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus
           NVH 391-98]
          Length = 247

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I  VRV +  
Sbjct: 99  ILDEIEDPHNLGSIMRTADATGAHGIIIPKRRSVGLTASVAKASTGAIEYIPVVRVTNLS 158

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 204

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + ++  P+     SLN S A  L+++E   
Sbjct: 205 IIGQKCDFLVHLPMVGKVTSLNASVAASLLMYEVYR 240


>gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301]
          Length = 246

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 32/173 (18%)

Query: 15  PVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADC 66
           P+++L      V      N G +AR+        L  + P       + +A  SSA A  
Sbjct: 94  PLVVLFDGVTDVR-----NFGAIARSAECAGAHGL--ITPLKNSAPVNAEAIRSSAGALT 146

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            I   RV S    LK   A+   + A T ++R         +                 I
Sbjct: 147 TIPVCRVGSVRNTLKALQAEGFQVVAATEKSRKLLYDADFRR--------------PTVI 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + G E  G++ E + L +  ++ P+     SLN+S A  +M++E +   I   
Sbjct: 193 VMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEVVRQRIGPE 245


>gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
 gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
          Length = 250

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 23/183 (12%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARS 59
           +   +  + + P  +LV        N+G   R      +    ++ P+D     +     
Sbjct: 84  HLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSK 141

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +  A   +  + V +    L+E      ++  T      +      P            
Sbjct: 142 VACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMDGEADLFHYDIP------------ 189

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +NV  + G E  G+        +A++S P+     S+NIS +  +++ E     ++  
Sbjct: 190 --ENVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETRRQRVLRG 247

Query: 177 EKN 179
           E  
Sbjct: 248 EAG 250


>gi|300786824|ref|YP_003767115.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
 gi|299796338|gb|ADJ46713.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
          Length = 155

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 19/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++   P++  N G   R   N    +L LV P      +K    +      +  VRV +
Sbjct: 3   RVLFYQPEIPPNTGNAIRLAANTGC-ELHLVEPLGFTLEDKQLRRAGLDYHDLARVRVHA 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +L  A   L    +YA TA              +A  L   +       ++FG E  GL 
Sbjct: 62  SLVAAWEVLLPAKVYAFTA--------------SATRLYTDVAYTPGDVLMFGPESVGLP 107

Query: 134 N--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +E       +  P+ P   SLN++    + V+E    
Sbjct: 108 AAVQEAPEVTDRVRLPMLPTSRSLNLANTAAITVYEAWRQ 147


>gi|149186958|ref|ZP_01865266.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
 gi|148829347|gb|EDL47790.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
          Length = 150

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFN--LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            I L +P++  N+G V R        +    L+ P      ++    +  A   ID V V
Sbjct: 2   RIALFEPEIAGNVGNVMRLGACMGAGVD---LIEPLGFPWDDRRVRRA--AMDYIDHVEV 56

Query: 74  -----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                F   + A A    +  TT   ++++     P +                ++FG+E
Sbjct: 57  VRHVSFEAFRAARAGQRLVLFTTRATQSSYDFAYRPDDI---------------LLFGKE 101

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+T+   A  +A +  P+ P   SLN++ +  L + E +  +
Sbjct: 102 SAGVTDAVRACVDASVRLPMKPEVRSLNLATSAGLALGEALRQT 145


>gi|40715982|gb|AAR88654.1| rRNA methylase-like protein [Viscum album]
          Length = 368

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NI  V R+     L  + +++        + R  S  A+  +D + ++ + +E   +L 
Sbjct: 183 GNISAVFRSADALGLQSVHVISCGSSKRYRENRHVSMGAEKWLD-IELWDSTQECFRNLK 241

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                 +R      + L   E+  V    +       I+ G E+ G++ E + LS+   S
Sbjct: 242 ------SRGYRIVTAHL---ESDAVSIYNMDWTSPTAIVTGNEKRGISEEALGLSDLHCS 292

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIV 174
            P+  +  SLN+S A  +++   + +  +
Sbjct: 293 IPMRGMVDSLNVSVAAGILMHHAVRDRTL 321


>gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           HTCC5015]
 gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           HTCC5015]
          Length = 264

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 27/171 (15%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADC----- 66
             V++L       N+G   R+     +    ++ P+D      A  R  +  A       
Sbjct: 112 PLVLVLDGVTDPHNLGACLRSANGAGVD--VVIAPKDKSAGLTAVSRKVACGAAEETPFI 169

Query: 67  -VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V +  R    L E    L  +      +R+ ++  L                  + ++ 
Sbjct: 170 QVTNLARTLKGLAE--RGLWIVGLADGEDRSLYEGRLD---------------GPMALVM 212

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  GL        + I++ P+     SLN+S A  + ++E +      S
Sbjct: 213 GAEGDGLRRLTRESCDEIVAIPMGGSVSSLNVSVAAGVCLYEVVRQRRAPS 263


>gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis MSMB43]
          Length = 262

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 16/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           AP L        ++L   Q   N+G + R+     + +     P   +  S K   S+  
Sbjct: 104 APALPARVADTSVVLDGVQDAGNVGSILRSAAAAGVKR-VFCAPGTAYAWSSKVLRSAMG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  +  
Sbjct: 163 AHFLLD---IHEDID----------AGTLIERLAIPVALTDSHGARAIYDCDLAG-PLAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +FG E  G++      +   ++ P      SLN++ A  + ++E          
Sbjct: 209 VFGNEGAGVSARWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA 262


>gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Neisseria meningitidis H44/76]
 gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           CU385]
          Length = 261

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 157

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 158 AETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPD--------------SA 203

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 204 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260


>gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
           SK114]
 gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
           SK114]
          Length = 249

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P +++L       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               +V
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIVGTDMGGNSDLYHCDLPD--------------SV 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249


>gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
 gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
          Length = 305

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 26/164 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--------SVRVFS- 75
             N G V R+        + LV       + K   S+  +   +           +    
Sbjct: 155 PGNAGTVIRSADAAGCECVVLVGDCVDVFNPKVIRSTTGSLFHLPILTMDESTFAQWCHE 214

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L  A      +Y T  R+         P+   +VL +R F+ Q   ++FG E  GL
Sbjct: 215 RGMTLVAA-----DVYGTKERS---------PRTLPVVLAQRTFAQQPTCVLFGNEARGL 260

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               +  ++ I+S P+     SLN++ +  +M+     +S V +
Sbjct: 261 ETGMLEQADDIVSIPIYGKAESLNLATSASIMLMSMAMSSHVET 304


>gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB]
 gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica
           RCB]
          Length = 243

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 23/172 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
            + ++ + P  +LV        N+G   R      +    ++ P+D     ++ A  ++ 
Sbjct: 86  DVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVH--AVIAPKDRAVGLTDVAAKTAC 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  V V +    L+E      ++  T                 A          +
Sbjct: 144 GAAETVPYVMVTNLARTLRELQEREIWVIGTAG--------------EAESDLYAAEWPK 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               + G E  G+        + ++  P++    SLN+S A  + ++E    
Sbjct: 190 ATAWVLGAEGEGMRRLTRENCDQLVKIPMHGTVESLNVSVAAGVCLFEARRR 241


>gi|45658662|ref|YP_002748.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294827733|ref|NP_710968.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601906|gb|AAS71385.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293385576|gb|AAN47986.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
          Length = 274

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 65/158 (41%), Gaps = 14/158 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRV 73
           P++++   +   N+G + R           LV +P+    +     +S  A         
Sbjct: 126 PILVIEGVEKPGNLGTILRTAEGAGFHT-VLVADPKLDLFNPNVIRASTGALF------- 177

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L+  + ++  IY    +N+    +V  P+      N  +     + ++FG E++GL+
Sbjct: 178 --TLEVYLGEIKLIYEILKKNQYRTLAV-TPEATKHYYNADLK--GKIALVFGSEQYGLS 232

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 S+  +S P+     SLN++ +  ++++E +  
Sbjct: 233 TYARNNSDEYVSLPMFGESDSLNLAMSAGIVMYEVIRQ 270


>gi|228472383|ref|ZP_04057148.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228276251|gb|EEK14986.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 220

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 18/143 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIAD 83
            N   V R    F +    ++  + G   +   +    A+  + ++R        EA+  
Sbjct: 46  HNTSAVVRTCEVFGVQTAHIIEEKYGKRLDSKIAM--GAEKWVTTIRYPHTQPCIEALRG 103

Query: 84  LHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I AT             P +   +  +           FG ER GL+ E I+ ++ 
Sbjct: 104 QGYRIVAT------VPPPGATPLQEFDITPKS-------AFFFGTERDGLSQEVISQADE 150

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
            ++ P+     SLNIS +V +++
Sbjct: 151 CLTIPMVGFTESLNISVSVAIIL 173


>gi|257783855|ref|YP_003179072.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
 gi|257472362|gb|ACV50481.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
          Length = 220

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 58/210 (27%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+P++  N G + R       T L LV P      +K+   +  A     +V V+ N 
Sbjct: 5   VLVEPEIPANTGNIGRTCVVSG-THLHLVGPLGFSLDDKSLKRAGMAYWKSLNVSVYDNW 63

Query: 78  KEAIADLHFIYATTARNRNNFKSVL----APKEAAIVLNERIFSGQNVG-------IIFG 126
            + I        T+      F   +      K     L ++               +IFG
Sbjct: 64  NQFIEKNGLA-DTSTTPEGVFAHDVGIDAVDKPHLHFLTKKAKKTYTQATYRDGDYLIFG 122

Query: 127 RERWGLTNEEIA-LSNAIISFPVNPL---------------------------------- 151
           +E  GL+ E +A  ++     P+                                     
Sbjct: 123 KESLGLSEELLAKHADECERIPMLQDSVSLVNREDWSQKHDALDGGGQYSHPVLLQQDIC 182

Query: 152 ----------FPSLNISQAVLLMVWECMEN 171
                       +LN+S A  ++++E +  
Sbjct: 183 GNFIDPNEFSVSALNVSNAAAIVLYEALRQ 212


>gi|194468370|ref|ZP_03074356.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           100-23]
 gi|194453223|gb|EDX42121.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           100-23]
          Length = 169

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P    N G +AR     N   T+L L+ P      +K    +       D V++ 
Sbjct: 5   IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59

Query: 75  -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                 +  + I D++ +Y  +    +++  V    E             +   +FG+E 
Sbjct: 60  YHEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE------------GDHYFLFGKET 107

Query: 130 WGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172
            GL    +       I  P N     +LN+S +  ++++E +   
Sbjct: 108 TGLPERFMQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQ 152


>gi|38233754|ref|NP_939521.1| putative rRNA methyltransferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200015|emb|CAE49684.1| Putative rRNA methyltransferase [Corynebacterium diphtheriae]
          Length = 272

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 33/181 (18%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A +        V + V+     N G + R         +          S KA  +SA 
Sbjct: 108 SAREALKGNPSLVCVAVETGEPGNAGTLVRVADAMGADCVIFAGTTVDPQSPKAVRASAG 167

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---- 119
           +   +  + V                   R  +  K     +   + +      G+    
Sbjct: 168 S---LFHIPVV------------------REPDMQKVWQILRARNVQMLATAAQGEINLD 206

Query: 120 --------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                       + G E  GL +E ++ ++  +  P+     SLN++ A  + ++E  ++
Sbjct: 207 TAGELLEKPTAWLMGNEAHGLNDEALSAADHSVRIPIRGRAESLNLATAASICMYESSKS 266

Query: 172 S 172
            
Sbjct: 267 Q 267


>gi|148543814|ref|YP_001271184.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184153219|ref|YP_001841560.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227364718|ref|ZP_03848767.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682655|ref|ZP_08162172.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530848|gb|ABQ82847.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           DSM 20016]
 gi|183224563|dbj|BAG25080.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227070177|gb|EEI08551.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978494|gb|EGC15444.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 169

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 26/165 (15%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L +P    N G +AR     N   T+L L+ P      +K    +       D V++ 
Sbjct: 5   IVLFEPLFPANTGNIARTCAGTN---TELHLIKPLGFSTDDKHMKRA--GLDYWDKVKIT 59

Query: 75  -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                 +  + I D++ +Y  +    +++  V    E             +   +FG+E 
Sbjct: 60  YHEDLPSFMKTIPDINRLYIVSKFATHDYSDVDYTGE------------GDHYFLFGKET 107

Query: 130 WGLTNEEIALSNA-IISFPVNPL-FPSLNISQAVLLMVWECMENS 172
            GL    +       I  P N     +LN+S +  ++++E +   
Sbjct: 108 TGLPERFMQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEALRQQ 152


>gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 270

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 12/150 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+   F +  + L+       S +A  +S  +   +  +R    L EA A L
Sbjct: 133 PGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMGSIVNVPLIR----LDEA-AYL 187

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
            +    T R       +      A +  E +  G    ++ G E+ GL     A  N ++
Sbjct: 188 DWHRGWTGR--TVGTHLR-----AELQPESVERGSATLLVMGNEQSGLPARIAATCNQLV 240

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             P+     SLN++ A  +M++    ++  
Sbjct: 241 RIPMRDGADSLNLAAATAIMLYAVTASAGA 270


>gi|118591955|ref|ZP_01549350.1| RNA methyltransferase [Stappia aggregata IAM 12614]
 gi|118435598|gb|EAV42244.1| RNA methyltransferase [Stappia aggregata IAM 12614]
          Length = 157

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 13/159 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I L  P + +N G + R      +T + L+ P     S+ A   +      ++   + 
Sbjct: 2   PDIALYQPDIPQNTGTILRLAACMGVT-VHLIEPAGFPISDSALKRA--GMDYLERAAMV 58

Query: 75  SNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++   A  D         R+      +L  K      +    +     ++ GRE  G+ 
Sbjct: 59  RHISFAAFDDWR-------RSERRRLVLLTTKSDLPYADFTFETDDI--LMMGRESSGVP 109

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  AL++A ++ P+     SLN++ +  +++ E +  S
Sbjct: 110 EDVHALADARLTIPMADGMRSLNVAVSTGMVLGEALRQS 148


>gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           Y412MC10]
          Length = 256

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 16/157 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L + +   N+G + R         + L   R    +     +SA A   +   RV +   
Sbjct: 109 LDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNLGQ 168

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + +      ++  T          V+   +    L +       V I+ G E  G+   
Sbjct: 169 TIDQLKEMGVWVVGT----------VVDAVQ---ELYDTEVFDGPVAIVIGNENKGMGRL 215

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++  P+     SLN S A  ++++E +   
Sbjct: 216 IREKCDVLVKLPMAGKINSLNASVAAGVVMYEVLRRR 252


>gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus]
          Length = 249

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   I  +RV +
Sbjct: 97  VLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               ++    + +++  T A N  +++ +                   + I+ G E  G+
Sbjct: 157 LANTIETLKDNGYWVVGTEANNSTDYREMDVAM--------------PLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +       +  I+ P+     SLN S A  LM++E   
Sbjct: 203 SRLVKDKCDFYINIPMVGHVNSLNASVAASLMMYEVFR 240


>gi|118444087|ref|YP_877482.1| RNA methyltransferase [Clostridium novyi NT]
 gi|118134543|gb|ABK61587.1| RNA methyltransferase, TrmH family, group 2 [Clostridium novyi NT]
          Length = 160

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 32/166 (19%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72
           I+L +P++ +N G + R     N   ++L L+ P      +K+   +           V 
Sbjct: 9   IVLFEPEIPQNTGNIGRTCVLTN---SKLHLIKPLGFRIDDKSLKRA--GLDYWPHLDVE 63

Query: 73  VFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V  +  + I    D +   +TT                A   ++ +       I+FGRE 
Sbjct: 64  VHESFDDMIKKYPDANIYLSTTK--------------EAKYHHDEVKYKTGDFIVFGRES 109

Query: 130 WGLTNEEIALSNAI---ISFPV-NPLFPSLNISQAVLLMVWECMEN 171
            GL   E      +   I  P+      SLN+S  V ++ +E +  
Sbjct: 110 SGLP--EYIRDRYVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQ 153


>gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 278

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 65/174 (37%), Gaps = 11/174 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
            Q  A   ++IL   Q   N+G + RA     +T + + +      + K   S+  +   
Sbjct: 116 TQEKAPAQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYR 175

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +  V    +L +A+           R +     + A         ++     + G + G 
Sbjct: 176 VPFV-YVEDLADAVR----------RVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGN 224

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           E  GL++E   L++A I  P+     SLN + A  ++++E          + + 
Sbjct: 225 EANGLSDETAELADAYIKIPMLGKVESLNAAVAASILMYETARQRRNGKGQKID 278


>gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 254

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L D     N+G + R         + L N      + K + S   +   ++ ++  ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIA L       A +   + S+L P   A            V +I G E  G++ E 
Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AL++  +  P+     SLN + A  +M++
Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIY 251


>gi|255584325|ref|XP_002532898.1| rRNA methylase, putative [Ricinus communis]
 gi|223527332|gb|EEF29478.1| rRNA methylase, putative [Ricinus communis]
          Length = 334

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            N+    R+        + +V+          R  S  A+  +D + ++ + +E    + 
Sbjct: 149 GNVSAAFRSADALGFQSVHVVSCDSSKRYRDNRHVSMGAEKWLD-IELWDSTQECFEVLK 207

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +     ++  +                I+ G E  G+++E + LS+ 
Sbjct: 208 SRGYRIATT----HVGMDAVSIYDM--------DWSCPTAIVVGNENRGISDEALELSDL 255

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
             S P+  +  S N+S A  +++ + 
Sbjct: 256 HCSIPMKGMVDSFNVSVAAGILMHQA 281


>gi|145350134|ref|XP_001419472.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579704|gb|ABO97765.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 183

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 27/172 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVIDS--VR 72
           ++LV P++  N G +AR       ++  L LV P      +     +        S  V+
Sbjct: 23  VVLVTPKIPGNTGCIARTCAA---SRVPLHLVAPLGFSLDDAQLKRA--GLDYWKSVCVK 77

Query: 73  VFSNLKEAIADLHFIYATTARNRNN----FKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V  +            A  A  R       + V   K  A    E         ++FG E
Sbjct: 78  VHDDWD----------AFYAYWRELGDERGRLVAFSKFGARPHAEDGAYRPGDWLLFGAE 127

Query: 129 RWGLTNEEIALSNA---IISFPVNP-LFPSLNISQAVLLMVWECMENSIVSS 176
             GL +  +    A   +   P++     SLN+S +  + V+E +     S 
Sbjct: 128 TTGLPDAAMEACKATGGVRRIPIDESHVRSLNLSVSCGIGVYEALRQLDGSP 179


>gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           G11MC16]
 gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           G11MC16]
          Length = 246

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 98  VLDELEDPHNLGAIMRTADAVGAHGVIIPKRRSVGLTPTVAKASTGAIEHIPVARVTNLA 157

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      ++  T A  +++++S+                   + ++ G E  G++ 
Sbjct: 158 RTIDELKERGVWVAGTDAAAKDDYRSL--------------DGTMPLALVIGSEGKGISR 203

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +   + +   P+     SLN S A  L+++E         E
Sbjct: 204 LVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEVYRKRYPLGE 246


>gi|114319697|ref|YP_741380.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226091|gb|ABI55890.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 220

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 25/176 (14%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +L+D      N+  + R      + +   V+            ++++      +V   ++
Sbjct: 22  VLLDQVHKPHNLSAILRTCDAVGVPRAHAVS---RHQDFTVHRAASSGTGQWVAVETHAD 78

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERW 130
           L  A+          A      K        A  L+E+          +   ++ G E+ 
Sbjct: 79  LPAAVR---------AVQGQGMKVY------AAHLSEQAVDYRQVDYTKPCCLLLGAEKE 123

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           G++ E  AL++  +  P+  L  SLN+S A  ++++E     + + +         
Sbjct: 124 GVSEEGAALADGHVIIPMFGLGASLNVSVAAAVILFEAQRQRLAAGQYETPRMAEA 179


>gi|332886049|gb|EGK06293.1| hypothetical protein HMPREF9456_00167 [Dysgonomonas mossii DSM
           22836]
          Length = 263

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 14/157 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS 75
           IIL   +   N+G V R           +V +P     +  A  SS      + +    S
Sbjct: 118 IILESVEKPGNLGAVLRTADA-AQADAVIVCDPATDIYNPNAIRSSVGCVFTVQTAVCTS 176

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             +EA++ L        R+RN      A +  A    +     +   I+ G E  GLT  
Sbjct: 177 --QEALSYL--------RSRNIK--AYAAELNASQWYQDTDFTKPSAIVMGTEADGLTLF 224

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  ++  +  P+     SLN+S +  ++ +E M   
Sbjct: 225 WLDNADYRVKIPMRGKIDSLNVSVSTAILTFEAMRQR 261


>gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6]
 gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           veneficus SNP6]
          Length = 227

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 13/149 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G   R    F    + +   R    +E     SA A   +   R   N+  A+ 
Sbjct: 91  EDPRNLGAAIRTAEFFGCAGVVIPKRRAVQVNETVVKVSAGAALHVSIAR--DNITNALK 148

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     + +     V+  +     + E         ++ G E  G++     L + 
Sbjct: 149 ----------KAKKFGIKVIGAELDGENI-ENADLTPPAALVIGGEDRGISQPVRKLCDF 197

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  P      SLN+S A  ++++E  ++
Sbjct: 198 LVKIPGRGKVGSLNLSVAAGILMYEFSKS 226


>gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801]
 gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801]
          Length = 260

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 60/178 (33%), Gaps = 26/178 (14%)

Query: 5   APQLQNSAKGPVI-------ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           A  +      P I       IL   Q   N+G + R      +  + L +      + K 
Sbjct: 95  ATAVNPKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKV 154

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNE 113
             SSA A   +  +     L   I         + AT     N +  V            
Sbjct: 155 LRSSAGAWFHVPLIVSCD-LSATIKHYQASGVQVIATLPTATNTYWDVDL---------- 203

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                Q   I+ G E  GL+ E  +L++  +S P+     SLN++ A  L+++E    
Sbjct: 204 ----TQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQ 257


>gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42]
 gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42]
          Length = 249

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I  V+V +  
Sbjct: 101 ILDELEDPHNLGSIMRTADAVGAHGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVTNLA 160

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E      ++  T A  R +++S+                   + ++ G E  G+  
Sbjct: 161 RTLDEMKERGIWVVGTDASAREDYRSM--------------DGKMPLALVIGSEGRGMGR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I  P+     SLN S A  L+++E   
Sbjct: 207 LVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYR 242


>gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
 gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
          Length = 250

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 11/167 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +G ++ L   Q   N+G + R+        + +   R    +     S+A A   I   +
Sbjct: 95  RGLILALDGVQDPHNLGALIRSAACAGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQ 154

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V +NL +A+ +L             F    A   AA  L ++  SG NV I+ G E  G+
Sbjct: 155 V-TNLAQALDEL---------KEAGFWIYGAADSAASSLYDQDLSG-NVVIVIGSEGEGV 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
                   + +++ P+     SLN S A  ++++E +   +  S +N
Sbjct: 204 RPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILFEVLRQRLAFSPQN 250


>gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 268

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 15/165 (9%)

Query: 10  NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  K P+I++++  +   N+G + R      +  + L +P+  W +     +S  A   +
Sbjct: 116 SPGKNPLILVLETVEKPGNLGAILRTADAAGVHAVFLCDPQTDWYNPNVIRASLGAVFTV 175

Query: 69  DSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
               V +   +A+  L     A  A +                          +  + G 
Sbjct: 176 PVFTVAA--ADALNWLQMHKIAILATHLEASYPYFD-----------CDLSGAIAFVMGT 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G++N  +  +   +  P++    S+N+S +  ++++E +   
Sbjct: 223 EANGISNFWVEAAQQRVIIPMHGQVDSMNVSVSTAILLFEALRQR 267


>gi|330805649|ref|XP_003290792.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
 gi|325079070|gb|EGC32689.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
          Length = 591

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 75/195 (38%), Gaps = 26/195 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-------VNPRDGWPSEKAR 58
             L ++A+  ++ L   +   N+G +AR    F +  + +               S +A 
Sbjct: 368 ESLGSAARPIIVFLDGVENPMNLGAIARTCALFGVKSIIINASSTENTKSPINPFSGEAY 427

Query: 59  SSSANADCVIDSVRV-----FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAA 108
            SS  A   ++ V +     ++   E + +        +  T++         L      
Sbjct: 428 RSSRGA---LEHVNISIINTYTETMECLNEFTSNGWELVV-TSSNLELKNNVTLY----- 478

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              + ++   + + ++FG E  G+  + +  S   ++ P   L  SLN++Q+  +++ EC
Sbjct: 479 SKGSNKLLGLKPMILVFGSESKGIGKKIMKASTRCLTIPGTGLIESLNVAQSASVILAEC 538

Query: 169 MENSIVSSEKNVKEQ 183
                 + E   +++
Sbjct: 539 WRIQGKNLESPDEKR 553


>gi|256832338|ref|YP_003161065.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685869|gb|ACV08762.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 275

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 12/153 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVF 74
           +L D +   N G V RA        + L        + K   SSA +     VI +  + 
Sbjct: 120 VLTDVRDPGNAGTVIRAADAAGADVVILAGDSVDLMNPKVVRSSAGSLFHMPVITNASLV 179

Query: 75  SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +  A+      ++ TT         ++ P+    V       G     +FG E  GL+
Sbjct: 180 D-VHGALKMAGIPLFGTTPYADLTLDDLVEPQGPTSV-------GAPHAWVFGNEAQGLS 231

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E+ ++ ++++  P+     SLN++ A  + ++
Sbjct: 232 VEDQSMCDSLVRIPMYGRAESLNLAMAATICLY 264


>gi|146297844|ref|YP_001192435.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146152262|gb|ABQ03116.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 151

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV+P++  N G + R       ++L L++P     ++K    S     V   V  + N
Sbjct: 4   VVLVEPEIPNNTGNIGRLCVGTE-SRLHLIHPFGFVINDKNLKRSGLDYWVHLDVTEYQN 62

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           ++E I    D   ++  ++ +  ++            L      G    ++FG+E  GL+
Sbjct: 63  VEEWIQQIPDHSRVFLMSSHSEKSY------------LENEFQDGDW--LVFGKESVGLS 108

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +A     ++ P++PL  S NI+ +V  +V E    
Sbjct: 109 AAFMARFENHLTIPMSPLIRSFNIANSVAFVVGEAKRQ 146


>gi|291277503|ref|YP_003517275.1| putative RNA methylase [Helicobacter mustelae 12198]
 gi|290964697|emb|CBG40552.1| putative RNA methylase [Helicobacter mustelae 12198]
          Length = 154

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L++P++ +N G + R        +L L++P      EKA   +      +  +R + N
Sbjct: 4   IVLIEPRIPQNTGNIGRLCVAAG-ARLHLIHPLGFSIDEKALKRAGMDYWRVLDLREWKN 62

Query: 77  LKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L+E          HF+ +T A+                         +   + FGRE  G
Sbjct: 63  LQEFWESHPFDHKHFLLSTKAKKIYYEAPFC----------------RECFLYFGREDAG 106

Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +  +   +  +   P+     S+N++ +V ++++E +  
Sbjct: 107 IDSGILQTYAKQVYKIPMQKNIRSINLATSVGVVLYEAIRQ 147


>gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           ATCC 27126]
          Length = 246

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L++ A+  +++L       N+G   R      +    +V P+D     +   R  +  A 
Sbjct: 91  LESEAQPLILVLDGVTDPHNLGACLRTADGAGVH--AVVVPKDKSASLNGTVRKVACGAA 148

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            V+  +++ +NL   +  L     +I  T        K++                    
Sbjct: 149 EVVPLIQI-TNLARTLKHLQDKGLWIVGTAG---ETDKTLYDVDLKGP-----------T 193

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 194 ALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLYEIVRQR 244


>gi|308189701|ref|YP_003922632.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|319776885|ref|YP_004136536.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
 gi|238809672|dbj|BAH69462.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624443|gb|ADN68748.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|318037960|gb|ADV34159.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
          Length = 177

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 17/161 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N G + R  +     +L ++ P       K   S   A  ++  ++    
Sbjct: 4   IVLFEPEISPNTGNIIRTCFALG-AKLHIIKPIGFDLDPK-YLSRPAAGRLLSDIQHEVH 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  E   + +  Y T    R   K+        +   +     + V I+FG+E  G
Sbjct: 62  ASYKDFYEKYKNKNIFYLT----RYGLKTYTD-----VDFKKEYKKNKEVWIMFGKESTG 112

Query: 132 LTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +       +  P+     S+N++  V ++ +E M  
Sbjct: 113 IDKEILQTHLENCLRIPMMSEMRSINLANTVAIVGFEIMRQ 153


>gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
 gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
          Length = 247

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 18/173 (10%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P +++L       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 87  PDLLAKVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  ++V +    L+    +  +I  T                 A     +      +
Sbjct: 147 AESVPLIKVTNLARTLRFLQEENVWIVGTAG--------------EADHTLYQSKLTGPM 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            ++ G E  G+        + +IS P+     SLN+S A  + ++E M   I+
Sbjct: 193 ALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAMRQRII 245


>gi|332006235|gb|AED93618.1| protein agamous-like 26 [Arabidopsis thaliana]
          Length = 368

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 24/153 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----CVIDSVR 72
           ++LV PQ+  N G +AR      +  L LV P  G+  + AR   A  D     V+ +  
Sbjct: 84  VVLVSPQIPGNTGCIARTCAASAVG-LHLVGPL-GFQVDDARVKRAGLDYWPFVVVKAHS 141

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            ++  +E             R +   K ++A  +    ++          ++FG E  GL
Sbjct: 142 SWAEFQEYF-----------RLQEGEKRMIAFTKRGTRIHSDFSYRSGDYLLFGSETSGL 190

Query: 133 TNEEIALSNA------IISFPVNPLF-PSLNIS 158
             E ++  N        +  P+   +   LN+S
Sbjct: 191 PPEALSDCNHEPYGGGTLRIPMVETYVRCLNLS 223


>gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 312

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 18/173 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +T    Q +++   PV++ V       N+G + R         L L   R    +     
Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMK 193

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +A A       RV +      E  +   +IY T A     ++ +            +  
Sbjct: 194 VAAGALETFPVARVINLNRTFTELKSAGFWIYGTVA---GEYQPLY-----------KAD 239

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               + ++ G E  GL++      + ++S P++ + PSLN+S A  + ++E  
Sbjct: 240 LSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVATGMALYEIF 292


>gi|296130835|ref|YP_003638085.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296022650|gb|ADG75886.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 153

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 19/165 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +   +P++  N G   R       T L LV P      E     +      +  V V ++
Sbjct: 3   VAFFEPRIPGNTGNAIRMCAGTGAT-LHLVEPLGFELDEARLRRAGLDYHDLAHVVVHAS 61

Query: 77  LKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L   +  L    ++A T R  + +  V                  +  ++FG E  GL  
Sbjct: 62  LAALLDALPASRVWAFTTRATDRYTDV--------------AWRDDDVLLFGPEPTGLPA 107

Query: 135 EEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + +A       +  P+ P   S+N+S A  +  +E          
Sbjct: 108 DVLAHPRVTGEVRIPMLPGRRSMNLSNAAAVATYEAWRARGFPGG 152


>gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Neisseria meningitidis WUE
           2594]
 gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           H44/76]
          Length = 250

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           N1568]
          Length = 250

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    +++P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVISPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 266

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 17/174 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +TP A  L  S+    I+    +   N+G + R         L L++      S ++  +
Sbjct: 104 LTPLA-ALDRSSADIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162

Query: 61  SANADCV--IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           S  A     I   R    L         +  T+                A    +     
Sbjct: 163 SMGALFTQSITQARWEEFLPWLRGGAGQLIGTS--------------LKATQDYQEPAYQ 208

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               ++ G E  GL  +  A  + ++  P+     SLN + A  +M +E +   
Sbjct: 209 SPSFLLVGNEAQGLPADYEAQCDLLVKMPMRGKADSLNAAVATAVMAYELLNQR 262


>gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 254

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L D     N+G + R         + L N      + K + S   +   ++ ++  ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIA L       A +   + S+L P   A            V +I G E  G++ E 
Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AL++  +  P+     SLN + A  +M++
Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIY 251


>gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 248

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  +++L   Q   N+G   R+      T + +   +    +   R +SA A   +  V+
Sbjct: 98  KALLLVLDGVQDPHNLGACLRSALAAGATAVVIPRDKSAPVNATVRKTSAGAADRLPVVQ 157

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L+E      +IY            V                  NV ++ G E 
Sbjct: 158 VTNLARTLRELQKQGVWIYGLAGEVDETLYGVDL--------------KGNVALVLGGEA 203

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL        + ++  P+     SLN+S A  + ++E +   
Sbjct: 204 DGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLFEAVRQR 246


>gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
 gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
          Length = 260

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 24/177 (13%)

Query: 5   APQLQNSAKGPVI-------ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           A  +      P I       IL   Q   N+G + R      +  + L +      + K 
Sbjct: 95  ATAVNPKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKV 154

Query: 58  RSSSANADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
             SSA A     +I S  + + +K   A    + AT     N +  V             
Sbjct: 155 LRSSAGAWFHVPLIVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDL----------- 203

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               Q   I+ G E  GL+ E  +L++  +S P+     SLN++ A  L+++E    
Sbjct: 204 ---TQPSLILLGNEGAGLSEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQ 257


>gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
 gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
          Length = 283

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 34/163 (20%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+     +    LV P    P   +A   S      +   R+            
Sbjct: 136 NVGAIFRSAAALGI-DAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTG 194

Query: 74  ------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                    L E +      +A T    ++   +  P   A          + + ++FG 
Sbjct: 195 GWAPTGVPLLHE-LGFKTAAFALT----DDSVPLDDPALNAE---------ERLALVFGT 240

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  GL ++ IA  +  +  P+     SLN++ A  +  W+   
Sbjct: 241 EGDGLAHDTIARCDYTVRIPMACGVDSLNVAAASAVAFWQLRR 283


>gi|302378497|gb|ADL32329.1| WemW [Proteus mirabilis]
          Length = 167

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71
           I+L +P++  N G + R   N     L L+ P  G+  +  R   A  D      +    
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61

Query: 72  RVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             ++ L+ E ++  +    T AR        L  K      N     G    ++FG E  
Sbjct: 62  DYYAFLESEGLSPDNVQSPTGARL-----FALTTKGTPAHSNVSYQDGDY--LLFGPETR 114

Query: 131 GLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL    +        I  P+     S+N+S  V ++V+E    
Sbjct: 115 GLPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157


>gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
          Length = 307

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 18/173 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +T    Q +++   PV++ V       N+G + R         L L   R    +     
Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMK 193

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +A A       RV +      E  +   +IY T A     ++ +            +  
Sbjct: 194 VAAGALETFPVARVINLNRTFTELKSAGFWIYGTVA---GEYQPLY-----------KAD 239

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
               + ++ G E  GL++      + ++S P++ + PSLN+S A  + ++E  
Sbjct: 240 LSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVATGMALYEIF 292


>gi|254526789|ref|ZP_05138841.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538213|gb|EEE40666.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str.
           MIT 9202]
          Length = 160

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 26/164 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76
           L +P++ +N G +AR+   FN+  L L+ P      +K    +         V V  + N
Sbjct: 5   LFEPRIPQNTGNIARSCAAFNIP-LNLIEPFGFKLEDKYLKRA--GLDYWPLVTVNKYEN 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++ +A           ++   + +   K   I L +  F   ++ ++FGRE  GL +  
Sbjct: 62  FEKFLA-----------SKATKRIISFSKRNGIYLKDFKFKQDDI-LLFGREDLGLPDYI 109

Query: 137 IALSNAIISF---------PVNPLFPSLNISQAVLLMVWECMEN 171
           I  ++ +IS                 SLN+S A  + ++E  + 
Sbjct: 110 IDKTDFLISIFMPNLQTGNNAQKGVRSLNLSVACGIAIYEAHKQ 153


>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
          Length = 1145

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 62/188 (32%), Gaps = 47/188 (25%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-----------VNPRDGWPSEKAR 58
           N  +  V++L   +   NIG + R    F +  L L           VNP        +R
Sbjct: 317 NVVRPIVVLLDGVENPMNIGSIVRTCAGFGVETLYLFNQEGASASGRVNPFSTASYLSSR 376

Query: 59  SSSANADCVIDSVR----------------VFSNLKEAIADLHFIYATTARNRNNFKSVL 102
            +  + D +  + R                + S    AI+D                   
Sbjct: 377 GAIEHLDVIPITARNTAINMIKEFAEQKWEIVST-ATAISDKALTL-------------- 421

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
                    +      + + +IFG E  G+      LS A ++ P   L  SLN+SQ+  
Sbjct: 422 -----FSEGSALTLGTKPLLLIFGSESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAA 476

Query: 163 LMVWECME 170
           +++ EC  
Sbjct: 477 IILAECWR 484


>gi|288957122|ref|YP_003447463.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909430|dbj|BAI70919.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 279

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 15/168 (8%)

Query: 1   MTPYAPQLQNS-----AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN--PRDGWP 53
           M P    L ++     A  P++IL       N+G + R    F L +  LV+  P    P
Sbjct: 106 MAPRTLPLFDTEAARRAAEPLLILDGVGNPHNLGAILRTAAFFGLPR-VLVSDHPGQALP 164

Query: 54  SEKARSSSANADCV--IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
           SE A   +        ++       + + +   H ++ T     +  +  +         
Sbjct: 165 SEAAYRVAEGGFEWVALERAPALPAVLKRLRASHRLFGTAL---DQSRPAVDAGALTGWR 221

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            +     +   ++ G E  G+    +A   A+++ P +    SLN++ 
Sbjct: 222 GK--ADTKPPAVVLGNEEDGIPPATLAACEAVLTIPGSGHVQSLNVAA 267


>gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
           FTG]
 gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
           FTG]
          Length = 248

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 23/166 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73
           ++IL + Q   N G   R+  +  +  + +  P+D     +   +  +  A      + V
Sbjct: 99  ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155

Query: 74  FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL  AI  L     +I        ++  S+                  +V I+ G E 
Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G+     A  + +   P+     SLN+S A  + ++E +   I  
Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQRISK 247


>gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
 gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
          Length = 248

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 23/166 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73
           ++IL + Q   N G   R+  +  +  + +  P+D     +   +  +  A      + V
Sbjct: 99  ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155

Query: 74  FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL  AI  L     +I        ++  S+                  +V I+ G E 
Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G+     A  + +   P+     SLN+S A  + ++E +   I  
Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQRISK 247


>gi|145595526|ref|YP_001159823.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145304863|gb|ABP55445.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 321

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 19/173 (10%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A ++  +A+  V+IL D     N+G + RA+    +    L++P    P  +     +
Sbjct: 159 PTAAEVLGTARR-VVILEDVNNHTNLGSIFRAVAGLGV-DAVLLSPTCADPLYRRSVRVS 216

Query: 63  NADCVIDSVRVFSNL---KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             +        ++ L    +A+A++        R        L P   A+ + +R+  GQ
Sbjct: 217 MGEVF---AVPYATLGPWPDALAEV--------RAAGFSVLALTPAPDAVPI-QRLEPGQ 264

Query: 120 NV--GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                ++ G E  GLT E +  S+  +  P+     SLN++ A  +  WE   
Sbjct: 265 RARAALLLGAEGSGLTREAMEASDVRLVIPMRRSVDSLNVAAATAVACWELGR 317


>gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
           30120]
 gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
           30120]
          Length = 245

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P ++IL       N+G   R+     +    +V P+D     +  A+  + 
Sbjct: 86  PDLLESTESPFLLILDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  +RV +             A T R     N   V    EA   L +   +G +
Sbjct: 144 GAAENVPLIRVTN------------LARTLRLLQEYNVWIVGTAGEADHNLYQSKLTG-S 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           V ++ G E  G+        + +IS P+     SLN+S A  + ++E +   I  
Sbjct: 191 VALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRITK 245


>gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           bercovieri ATCC 43970]
 gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           bercovieri ATCC 43970]
          Length = 246

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQRALKA 246


>gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 250

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 21/165 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R      +  + +   R    +     +SA A   +   RV    
Sbjct: 101 ILDEIEDPHNLGSILRTAECTGVHGVIIPKRRSAAVTATVSKTSAGAVEYVPVARVTNLV 160

Query: 75  SNLKEAIADLHFIYAT-TARNRNNFKS--VLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +++      +I  T        ++S  VL                  V I+ G E  G
Sbjct: 161 QTMEQLKEAGVWIVGTDVGAKEEMYRSGNVLT---------------GPVAIVIGNENKG 205

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        + ++  P+N    SLN S A  ++++E +       
Sbjct: 206 MGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIMYEVLRRRRAEG 250


>gi|89898599|ref|YP_515709.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89331971|dbj|BAE81564.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 265

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 14/154 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI 81
           +   N+G + R         + L +P     +     SS      +    ++S  L+E +
Sbjct: 125 EKPGNVGALLRIADGVGADGVVLCDPIVDLYNPNVIRSSLGTVFTLP---IWSATLEEVL 181

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T         V  P+ +++   E     Q + ++FG E+ GLT+  +    
Sbjct: 182 Q--------TLSEEKWQVFVTTPRASSLYFCE--NYNQPLALVFGSEKDGLTSSWLNGDF 231

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + IS P+     SLN+S AV  + +E +    VS
Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAYEVIRQRWVS 265


>gi|115477186|ref|NP_001062189.1| Os08g0506500 [Oryza sativa Japonica Group]
 gi|42408928|dbj|BAD10185.1| rRNA methylase-like [Oryza sativa Japonica Group]
 gi|113624158|dbj|BAF24103.1| Os08g0506500 [Oryza sativa Japonica Group]
          Length = 236

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 34/178 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P +  N G +AR      +  L LV                    V+  V++  +
Sbjct: 75  VVLVSPLIPGNTGSIARTCAASAVG-LHLV----------------GVRYVV--VKIHDS 115

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             E   D           ++  K +LA  +    ++          ++FG E  GL    
Sbjct: 116 WNE-FRDYFM-------KQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGSETKGLPQSA 167

Query: 137 IALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           +   +        I  P+   +   LN+S +V + ++E              E    A
Sbjct: 168 LEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYEQLHYQPELPEEA 225


>gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella
           tarda FL6-60]
          Length = 247

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 21/177 (11%)

Query: 6   PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61
           P L      P    IL       N+G   R+     +    +V PRD     +  A+  +
Sbjct: 86  PDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAAGV-DAVIV-PRDRSAQLNATAKKVA 143

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +  +RV +             A T R   + +   V    EA   L +   +G 
Sbjct: 144 CGAAENVPLIRVTN------------LARTMRLLQQESIWIVGTAGEADHSLYQSRMTGA 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +      +
Sbjct: 192 -MALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRSAKA 247


>gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia
           rustigianii DSM 4541]
 gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia
           rustigianii DSM 4541]
          Length = 245

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 65/175 (37%), Gaps = 20/175 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V P+D     +   +  + 
Sbjct: 86  PDLLESTESPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSAQLNATVKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   I  +RV +             A T R     N   V    EA   L +   SG +
Sbjct: 144 GAAENIPLIRVTN------------LARTLRLLQEYNVWIVGTAGEADHTLYQSKLSG-S 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +      
Sbjct: 191 IALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRTAK 245


>gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
           ATCC 35405]
          Length = 258

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL       N G + R+   F +  + +   +     E     SA A   +  V V +
Sbjct: 112 VVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTN 171

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      +  T  R +     +         L    F  + V +I G E  G++  
Sbjct: 172 -----------LVRTVERLKKEGFWIYGADAGGKALPNLTFPKKTV-LIMGNEGRGMSRL 219

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                + I+S P      SLN+S A  ++++E   
Sbjct: 220 VEETCDEIVSIPTKGKLDSLNVSVAAGILLYEISR 254


>gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           brennaborense DSM 12168]
 gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           brennaborense DSM 12168]
          Length = 262

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 19/163 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVIDS 70
           V++L       NIG + R+     ++   L     V   DG  SE    +SA A   +  
Sbjct: 114 VVVLDSVTDPHNIGAILRSCDQLGVSLAVLPERRGVKNVDG--SEVISRASAGASAWVP- 170

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + + SNL  A+  L           ++  + +   +                +I G E  
Sbjct: 171 ISIASNLVRAVGQLK-AAGFWIYGADSGGTPVTDVDFPP----------RTVLIMGSEGS 219

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G++       + I+S P      SLN+S A  +++++    S+
Sbjct: 220 GISRLLAEQCDRIVSIPTCGKLDSLNVSVAAGILLYDIYRKSL 262


>gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
           capsulatum ATCC 51196]
          Length = 270

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +  +N+G + R+     +  + L   R    S  A  +SA A   I   RV  NL  A+ 
Sbjct: 107 EDPQNLGALLRSADGAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVV-NLVRALE 165

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L          +      +   E   +  +         ++ GRE  GL +      + 
Sbjct: 166 QL----------KEQNIWCVGLDERGTMSYDAYDWTTPSVVVLGREGEGLHDLVRKTCDH 215

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           ++  P+     SLN+S A  ++++E      V   +   
Sbjct: 216 LVRIPMAGGVSSLNVSAAGAVVLYEAARQRRVGKPETAP 254


>gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7425]
          Length = 387

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R         L +   R    +      +A A       RV  NL +A+  L
Sbjct: 230 PHNLGAIIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVV-NLNQALEQL 288

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +IY   A      K + + + +  V+           ++ G E  GL+       
Sbjct: 289 KAAGFWIYGMAATA---AKPIYSVEFSGPVV-----------LVVGAEGTGLSLLAQRYC 334

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           + ++S P+    PSLN S A  + ++E       +S +    Q++
Sbjct: 335 DQLVSIPLLGKTPSLNASVATGMALYEIFRQRSSTSVRQPLPQHS 379


>gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
 gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
          Length = 269

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 11/154 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+++       NIG + R+     +  + L        + +A   S  +  ++    V  
Sbjct: 122 VVVIHGVVDTTNIGAIFRSAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVDR 181

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L++         A    +R+    +  P          +     + ++ G E  GL   
Sbjct: 182 PLEQLKELGFRTAAMALTDRSV--PLDYPP---------LKEEPRLALVMGTEGDGLPEA 230

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            I  ++ ++  P+     SLN++ A  +  WE  
Sbjct: 231 AIEGADYVVRIPMAHGVDSLNVAAASAVAFWELR 264


>gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
 gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
          Length = 342

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 19/174 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
                  V++L       N G + R+        + + N R    +     +SA A   +
Sbjct: 181 PADRPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHV 240

Query: 69  DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +V  N+  A+ DL     ++   T              E A  +         V ++
Sbjct: 241 PIAQV-PNIARALEDLKSAGFWVGGAT--------------EHAEGICWDAPFEGRVALV 285

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            G E  G++   +   +     P      SLN++QA   + +E +  +  + ++
Sbjct: 286 MGSEGDGISRLVLDTCDFTTKLPQRGATESLNVAQAATALCFEWLRRNQTALDR 339


>gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 3431]
          Length = 243

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  AR  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATARKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           intermedia ATCC 29909]
 gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           intermedia ATCC 29909]
          Length = 246

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S   P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLESVDMPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRLLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVRQRALKA 246


>gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri]
          Length = 244

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 10/155 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L       N G + R    FN+  + +++ R    +     +SA A   +   RV +NL
Sbjct: 99  VLDQISDPHNFGAILRTCDLFNVDGVIILDKRQVDINATVAKTSAGAFNYVPVCRV-NNL 157

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             AI  L          +  F                +     + +I G E  G++ + +
Sbjct: 158 TNAIEYL---------KKQGFWIYATSLNTKAQNVSELKYDIPICLIVGNEGTGISAKLL 208

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             ++  I  P      SLN+S A  +++++     
Sbjct: 209 KHADFNIYIPTAGHLDSLNVSVASAILIYQIKMLQ 243


>gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240149]
          Length = 234

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      ++ A
Sbjct: 73  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVASGA 130

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 131 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 176

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 177 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233


>gi|91218034|ref|ZP_01254985.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
 gi|91183781|gb|EAS70173.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
          Length = 263

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 23/178 (12%)

Query: 4   YAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
               L+ S+K P+I++ + P+   NIG + R      L  + + NP+    +     SS 
Sbjct: 103 RIENLRLSSKTPLIMIAEAPEKPGNIGALLRTADAAKLDAVIIANPKTDLYNPNIIRSSV 162

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSG- 118
                     VF+N             TT+   +  K+    K  A  L +    +  G 
Sbjct: 163 G--------TVFTN--------SIGTGTTSEIIDFLKN-NNIKIYAAALQDSSSYLAEGF 205

Query: 119 -QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +   I+ G E  GL+ E    ++ II  P+     SLN+S +  ++++E      +S
Sbjct: 206 KEATAIVVGTEHQGLSEEWRINADKIIKIPMEGQVDSLNVSVSAAILIFEAKRQRQLS 263


>gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 243

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S + P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RMA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 244

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    + P +++L       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLAQVETPFLLVLDGVTDPHNLGACLRSADAAGVHAVIIPRDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +  +RV +    L+  + + + ++  T                 A     +      
Sbjct: 146 AESVPLIRVTNLARTLR-LLQEYNIWVVGTAG--------------EADHTLYQSKLTGP 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLFEAVRQR 242


>gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 286

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 15/176 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            Q+  +    V +L   +   N G V R         + L +      + KA  +S  + 
Sbjct: 117 EQVLAARPKLVAVLAHVRDPGNAGTVLRTADAAGADAVVLTDASVDPYNPKAVRASVGSL 176

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSG---QNV 121
             +        ++EA+          AR R     VLA   A    L++ +  G      
Sbjct: 177 FHLPVATGVP-VEEAV----------ARLRAAGVRVLAADGAGERDLDQELDQGTLEGPC 225

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +FG E WGL  E  AL++A++  P++    SLN++ A  + ++           
Sbjct: 226 AWVFGNEAWGLPEETRALADAVVRVPIHGHAESLNLATAAAVCLYASARAQRSPRG 281


>gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 249

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L + +   N+G + R         + + N R    ++    +S  A   I  VRV + 
Sbjct: 100 ILLDELEDPHNLGSIMRTADAVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPVVRVTNL 159

Query: 76  -NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
               + + D    I+ T A+  ++++++                   +GI+ G E  G++
Sbjct: 160 NKTIDVLKDRGLWIFGTDAKGSSDYRTMDV--------------DMPLGIVIGSEGAGMS 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  ++++E   
Sbjct: 206 RLVREKCDFLVHLPMKGKVTSLNASVAASILLYEVYR 242


>gi|197334706|ref|YP_002157141.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11]
 gi|197316196|gb|ACH65643.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11]
          Length = 159

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V+   N
Sbjct: 4   IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +  L       A + +    + A        +      +   ++FG E  GL  + 
Sbjct: 63  YAAFLEYL-------ANDSDVEHRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPADL 115

Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        +  P+ P   SLN+S +V ++V+E    
Sbjct: 116 IDGLPMEQRVRIPMMPDSRSLNLSNSVAIIVFEAWRQ 152


>gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
 gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
          Length = 320

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G + R++  F    + +   R    +  A  +SA A   I   + 
Sbjct: 170 PLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAK- 228

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL  A+ D           R  F  +    +  + L +   + + + ++ G E  GL+
Sbjct: 229 AGNLTRALEDF---------KRAGFFVLGLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLS 279

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + I+S P++    SLN   A  + ++E     
Sbjct: 280 RLVRETCDQIVSIPMSSAVESLNAGLATGVALYEIARQR 318


>gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
 gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
          Length = 284

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 13/155 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE----AI 81
           N+G   R+     +    LV P    P   ++   S      +   R+     +     +
Sbjct: 137 NVGAAFRSAAALGI-DAVLVTPTCCDPLYRRSVRVSMGTVFQVPWTRIGQTPDDWPDRGL 195

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             LH    +TA       ++     +  + +  + + + + II G E  GL    IA  +
Sbjct: 196 ERLHACGFSTA-------AMALSDNSVSLSDAALNACERLAIIMGTEGDGLAKRTIAQCD 248

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  P+     SLN++ A  +  ++   +S  S 
Sbjct: 249 FTVRIPMRHGVDSLNVAAASAVAFYQLCSSSNSSG 283


>gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 254

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L D     N+G + R         + L N      + K + S   +   ++ ++  ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIA L       A +   + S+L P   A            V +I G E  G++ E 
Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AL++  +  P+     SLN + A  +M++
Sbjct: 222 AALADEKLYIPIKGRAESLNAAVAAGIMIY 251


>gi|27377595|ref|NP_769124.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27350740|dbj|BAC47749.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L  P + +N G + R      L    ++ P     S++    +      +D V +   
Sbjct: 3   IALFQPDIPQNTGTILRLCACLGLAA-HIIEPAGFPVSDRHFRRA--GMDYLDQVSITRH 59

Query: 74  --FSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +   +E  A      +  TT       K+    ++     ++         ++FGRE 
Sbjct: 60  VSWPQFEEWRAAQGCRLLLFTT-------KAATDYRDFRYQTSDI--------LLFGRES 104

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+T+  +  ++A +  P+ P   SLN++    +   E +  
Sbjct: 105 AGVTDAVVEAADARLVIPIAPGLRSLNVAMTAAMAAGEALRQ 146


>gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           mollaretii ATCC 43969]
 gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           mollaretii ATCC 43969]
          Length = 246

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S + P +++L       N+G   R+     +    +V PRD     +  A+  ++
Sbjct: 86  PALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNAIAKKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  ++V +    L+       +I  T                 A     +     
Sbjct: 144 GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG--------------EADHTLYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    + +
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVRQRSLKA 246


>gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78]
 gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78]
          Length = 273

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 22/157 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSNLK 78
            N+G   R      +    L+ PR   P   +A   S  A   +   R+         +K
Sbjct: 131 ANLGAAFRNAAALGV-DAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIK 189

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A        A    +R+     L  +E              + ++FG E  GLT   + 
Sbjct: 190 QA--GFTLA-AFCLSDRSLTLDALVAREDP-----------RLALLFGSEGPGLTPAALT 235

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            ++  +  P+     SLN++ A  ++ +   +NS   
Sbjct: 236 AADLHVRIPMQAGIDSLNVAAATAVVFYATRKNSPSG 272


>gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
           DSM 1131]
 gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
           DSM 1131]
          Length = 249

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  +   P +++L       N+G   R+     +    +V P+D     +  A+  + 
Sbjct: 86  PDLLENTSSPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  +RV +             A T R     N   V    EA   L +   +G +
Sbjct: 144 GAAENVPLIRVTN------------LARTLRLLQEYNVWIVGTAGEADHNLYQSKLTG-S 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 191 IALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRL 243


>gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           KF-1]
 gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           KF-1]
          Length = 256

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 23/165 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G   R      +    ++ P+D      A  +  ++ A   +    V +
Sbjct: 104 VLDGVTDPHNLGACLRVADGAGVH--AVIAPKDHAAGINATVAKVASGAAETVPYFMVTN 161

Query: 76  ---NLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               LKE      +I  T+   +R+ ++  L                    ++ G E  G
Sbjct: 162 LARTLKELKERGIWIIGTSGDADRHLYQMDLT---------------GPTALVLGAEGDG 206

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        +A++S P+     SLN+S A  + ++E +   + ++
Sbjct: 207 MRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALRQRLAAA 251


>gi|160880554|ref|YP_001559522.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160429220|gb|ABX42783.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 238

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 18/153 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV+P    N+G + R    F +  +  + P     + K   SS  A   +   + F +
Sbjct: 95  IVLVNPSNMGNLGTILRTAVGFGIHDVSFIEPGADVFNPKVVRSSMGALFRLRH-QYFES 153

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKE---AAIVLNERIFSGQNVGIIFGRERWGLT 133
             E               + N    +          +        +   ++FG E  GL 
Sbjct: 154 FSE-------------YQKQNPNHEIFTFMLNGKKPLTINDCPKPKLFSLVFGNEATGLD 200

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +  +++  +II  P +    SLN++ AV +  +
Sbjct: 201 DSYLSVGTSII-IPQSEEVDSLNLTIAVGIGTY 232


>gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
 gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
          Length = 352

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    L+       S  A  ++   A+ V        ++ EAI  
Sbjct: 215 PHNLGAMMRSCAHFGVKG-VLLQDAALLESGAAIRTAEGGAEHV--QPITGDSVLEAIEQ 271

Query: 84  LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  I  T++           P+               + ++ G+ER GL++  ++ 
Sbjct: 272 FRSAGYTIVTTSSHEGTPLFKATLPR--------------KMVLVLGQERDGLSDAALSS 317

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +S        SLN+S A  +++ E    
Sbjct: 318 ADLSVSINGTGNVESLNVSVATGVLLAEWWRQ 349


>gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185]
 gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185]
          Length = 243

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P+L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PELIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|86748324|ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gi|86571352|gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 150

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 29/166 (17%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            I L  P + +N G + R  A  N    +  ++ P     S++    +      +D + +
Sbjct: 2   RIALYQPDIPQNTGTLLRFCACLNV---EAHIIEPAGFPTSDRHFRRA--GMDYLDQITI 56

Query: 74  F-----SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                 S  ++    AD   I  TT          L  +  +  +           ++ G
Sbjct: 57  VRHDSWSKFEQWRKDADCRVILLTT----KGVTPYLEQRYQSTDV-----------LLLG 101

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           RE  G+ +E  A ++A I  P+ P F SLN++ A  L+V E +  +
Sbjct: 102 RESAGVPDEVAAAADARIVIPMQPGFRSLNVAMAAALVVGEALRQT 147


>gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509]
          Length = 243

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S + P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
 gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
          Length = 249

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L ++A G  ++LV    Q   N+G   R+     +T + +   +    +   R +S+ A
Sbjct: 90  DLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIISKDKSVGINATVRKTSSGA 149

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +   +L+E      +IY        +          A+ L        NV
Sbjct: 150 ADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL--------YALDLR------GNV 195

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            ++ G E  GL        + +   P+     SLN+S A  + ++E +    +
Sbjct: 196 ALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQRTL 248


>gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 253

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 21/165 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R         L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               EA + L ++  +G  + II G E  G+
Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                   + ++  P+     SLN+S A  + ++E +    V + 
Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 249


>gi|254456524|ref|ZP_05069953.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083526|gb|EDZ60952.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 157

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 19/166 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            S   P I L +P + +N   + R        +L ++ P     S+K            D
Sbjct: 5   PSILRPKIALYEPDIPQNTAAIIRTCACLG-AKLEIIEPCGFHLSDKRFKRVVMDYMDWD 63

Query: 70  SVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            + ++ +     +A  +   +  TT                A V        +N  I+FG
Sbjct: 64  KINIYQSSDKFFKAKKNQRIVLMTT---------------KASVSYTEFKFEKNDTILFG 108

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           RE  G+      L N  +  P++    SLNI+ +V +++ E +  +
Sbjct: 109 RESSGVPESVHQLINDRLKIPMSEDTRSLNIASSVAIILAESLRQT 154


>gi|170728904|ref|YP_001762930.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|169814251|gb|ACA88835.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 231

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 24/166 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVF--SNLKEAI 81
           NI  V R      + Q+  V     WP  + R    +++ +   + +++ +   + ++A 
Sbjct: 32  NIAAVIRTADAVGVHQIHAV-----WPDIEMRVSGNTASGSQQWVKTIKHYHMDDAQQAF 86

Query: 82  ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              +  + ATT              E A+   E I   +   II G ER G++ E IA +
Sbjct: 87  RAQNMQVLATT------------FSETAVDFRE-IDYTRPTAIILGNERDGVSQEGIAAA 133

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
              I  P+  +  SLN+S A  L+++E       +     ++ +  
Sbjct: 134 GQHIIIPMIGMVQSLNVSVASALVMYEAQRQRTAAGMYGTRKLDEA 179


>gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 266

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 17/161 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+L + +   N G + R         + +   R+   +     SS  A   +   +V +
Sbjct: 115 IIVLDEIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTN 174

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               +++   D  ++Y       N    V                     +I G E  G+
Sbjct: 175 LNTTIEKLKKDGIWVYGADMSGENYCFDVDF--------------KGPAALIIGSEGRGI 220

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                   + ++  P+     SLN S A  ++++E ++  I
Sbjct: 221 AKLTKEKCDVLVKIPMVGRVSSLNASVAGGILMYEILKQRI 261


>gi|260460492|ref|ZP_05808743.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259033597|gb|EEW34857.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 285

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G V R +       + LV       S +   ++  +   +   +  + 
Sbjct: 131 VALDRVRDPGNLGTVIRTVDAVGAKGIILVGDTTDPFSVETVRATMGSIFAVPIAK--AT 188

Query: 77  LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  +A        +  T  +   +++SV   +               V ++ G E+ GL
Sbjct: 189 TEAFLAWRGAFSGLVAGTHLKGAVDYRSVDFSR-------------GPVLLMMGNEQQGL 235

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                A  + ++  P      SLN++ A  +M++E    ++
Sbjct: 236 PESLAASCDRLLRIPQAGRADSLNLAVATGIMLFEIRRGAL 276


>gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
          Length = 240

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 83  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 142

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 143 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLCQSKMTG-RLA 189

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 190 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239


>gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
           17982]
          Length = 325

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 16/172 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            LQ      ++ L       N+G V R+   F    + +   R    +  A   SA A  
Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226

Query: 67  VIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV      L+EA    +F+                       L     +   + +
Sbjct: 227 RVPVARVTNLVRALEEAKQAGYFVVGLDGGGD-------------APLRGLSLADGPLVV 273

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + G E  GL+       + I+S P+     SLN + A  + ++E        
Sbjct: 274 VTGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQD 325


>gi|260903728|ref|ZP_05912050.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
          Length = 154

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 19/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+   P++  N G   R         L LV P     S+     +      +  V V ++
Sbjct: 5   IVFHTPEIPGNTGNAIRLAAVTG-AHLHLVEPLGFDLSDAKLRRAGLDYHDLAHVTVHAS 63

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           L +    L    + A T     +F  V                     ++FG+E  GL +
Sbjct: 64  LTDLWNHLGERRVIAFTTHTDQSFAEVDYRD--------------GDVLLFGQESTGLPD 109

Query: 135 EEIALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   +  +    P+ P   SLN++ +  + ++E     
Sbjct: 110 SVVDDDHVDLSVRIPMLPSRRSLNLANSASIAIYEAWRQQ 149


>gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus
           DSM 2379]
          Length = 251

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 11/162 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  A G +++L   Q   N+G + R       + + +   R    +  A  +SA A   I
Sbjct: 91  REDAAGFLLVLDGIQDPHNLGALIRTAACAGASGVVIPRDRACAITPAAEKASAGAVETI 150

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +V +N+ +++  L          R+ +       EA   L E  FSG  + ++ G E
Sbjct: 151 TVAQV-TNIAQSLEKL---------KRSGYWVYGLSGEADASLYEVAFSG-KIALVIGGE 199

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             G+        +A++S P+     SLN S A  + ++E   
Sbjct: 200 GEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALYEVAR 241


>gi|59712952|ref|YP_205728.1| rRNA methylase [Vibrio fischeri ES114]
 gi|59481053|gb|AAW86840.1| predicted rRNA methylase [Vibrio fischeri ES114]
          Length = 159

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V+   N
Sbjct: 4   IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKN 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +  L       A + +    + A        +      +   ++FG E  GL  + 
Sbjct: 63  YAAFLEYL-------ANDSDVEHRIFACTTKTTGHHTTPTYQKGDVLLFGPETRGLPADL 115

Query: 137 IA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I        +  P+ P   SLN+S +V ++V+E    
Sbjct: 116 IDGLPMEQRVRIPMMPDSRSLNLSNSVAIIVFEAWRQ 152


>gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 251

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 21/166 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R         L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               EA + L ++  +G  + II G E  G+
Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                   + ++  P+     SLN+S A  + ++E +       + 
Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSAKRKP 250


>gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 250

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 21/165 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R        Q  +V P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAG-AQAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               E    L +   +G  V ++ G E  G+
Sbjct: 159 LARTLEKLQKKGLWVVGTAG-------------EVEQELYQLDMTGPTV-LVMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                   + ++  P+     SLN+S A  + ++E +       +
Sbjct: 205 RRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQRQAKRQ 249


>gi|328545333|ref|YP_004305442.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
 gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
          Length = 279

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 16/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L   +   N+G + R       + + LV       + +A  ++  +   +   R+ ++
Sbjct: 133 IALDRVRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRATMGSLFHVPLARLSTD 192

Query: 77  LKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +A+A      +  T      +++S+                 +   ++ G E+ GL  
Sbjct: 193 AFKALAAKWPGMVVGTHLEGSVDYRSLDY--------------SEPALLLMGNEQQGLPA 238

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +  A  + ++  P      SLN++ A  + ++E     +
Sbjct: 239 DMAACCSHLVRIPQVGQADSLNLAVATGIALYEIRRKHL 277


>gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
           fergusonii ECD227]
          Length = 243

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 265

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 12/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           QL  ++    I L   +   N+G + R         + L+       S +A  ++  +  
Sbjct: 112 QLDPASASCWIALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATMGSV- 170

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                        AI     + A  A       SV+  +  A V            I+ G
Sbjct: 171 ----------FAVAIVRCT-VEAFLAWRTAWPGSVVGTRLDATVSYREAAYAGPTLILMG 219

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E+ GLT+   A  +  +  P+     SLN++ A  +M +   + +
Sbjct: 220 NEQAGLTDGLAAACDVNVKIPMRGRADSLNLAIATGIMAYAVTDAA 265


>gi|239948353|ref|ZP_04700106.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes
          scapularis]
 gi|239922629|gb|EER22653.1| tRNA/rRNA methyltransferase [Rickettsia endosymbiont of Ixodes
          scapularis]
          Length = 58

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query: 14 GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
           P+IILV PQ+GENI   ARA+ NF L +L +V P
Sbjct: 2  NPIIILVAPQMGENISATARAIKNFGLNELGIVAP 36


>gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
          Length = 265

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 16/174 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           PQL    K P ++IL       N G + R      +  + L        +  A  +SA A
Sbjct: 104 PQLFEEGKTPFLLILDRLTDVRNFGAICRTAECVGVHAIILPEKGAAPINSDAIKTSAGA 163

Query: 65  DCVIDSVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              I ++R+    NL  A+  L            +   V +  E A  L   +   Q   
Sbjct: 164 ---IYNLRICKEKNLAHAVDFLQ----------QSGLQVFSASEKAQKLIYDVDFTQPCA 210

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I+ G E  G++ E +  S+  I  P+     SLN+S A   +++E +   + + 
Sbjct: 211 IVMGNEETGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEAVRQKLSTP 264


>gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           ATCC 29906]
 gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           ATCC 29906]
          Length = 247

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P +++L       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 87  PDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 146

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 147 AESVPLIRVTN------------LARTLRLLQEENIWIVGTAGEADHTLYQSKLTG-PLA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++ G E  G+        + +IS P+     SLN+S A  + ++E M   I
Sbjct: 194 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQRI 244


>gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2]
 gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2]
          Length = 249

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L + +   N+G + R         + +   R    +     +S  A   I  V+V +
Sbjct: 99  ILVLDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L+E      ++  T A  + +++S+                   + ++ G E  G+
Sbjct: 159 LSRTLEEMKGRGIWVVGTDASGQQDYRSL--------------DGNMPLALVIGSEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                   + +I  P+     SLN S A  L+++E   
Sbjct: 205 GRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYEVYR 242


>gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           subterraneus DSM 13965]
          Length = 306

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 12/162 (7%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            + P++++    Q   N+G V R+          +   R       A  SSA A   +  
Sbjct: 131 REPPLLVICAGIQDPHNLGAVFRSAEAAGAHGAVVPVHRSAPLGPTAFKSSAGALVHLAV 190

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +V        A+L+ +     R +     V+A         ++    +   ++ G E  
Sbjct: 191 AQV--------ANLNQVV---RRFKEQGVWVVAADPEGAQPYDQWDWTRPTALVLGSEGR 239

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G+    +   +  +  P+     SLN+S A  ++++E     
Sbjct: 240 GIPPLLLRQCDGRVFIPMAGKVASLNVSVAAGILLFEAARQR 281


>gi|298346967|ref|YP_003719654.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|315656580|ref|ZP_07909467.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298237028|gb|ADI68160.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|315492535|gb|EFU82139.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 275

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 16/166 (9%)

Query: 6   PQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P +  S +G   +IL   Q   N+G + R       + + +        S K   +S  +
Sbjct: 113 PSVTGSPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              + + R F +L   +  L      I  T+     +   +L P  A         S + 
Sbjct: 173 VFHVPTPR-FQDLAAVVKALRSEGWTIVGTSL----SGDVMLTPVTAGTW------SNKK 221

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           V  + G E  GL   E +  + ++S P+     SLN++ A  L +W
Sbjct: 222 VAWVMGNEAHGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267


>gi|282854556|ref|ZP_06263891.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|289427763|ref|ZP_06429474.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|295130948|ref|YP_003581611.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|282582138|gb|EFB87520.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|289159027|gb|EFD07220.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|291375145|gb|ADD98999.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
          Length = 271

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 14/164 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +L + A    +I    +   N G V R    F    + L        + K   SS  + 
Sbjct: 111 RELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSI 170

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             +  V V   L +A+               +  SVLA       L+    SG   + + 
Sbjct: 171 FHLP-VVVGVELADAVE----------WAHQHQMSVLAADGGGHSLDVVARSGCLKRPIA 219

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + G E WGL   + AL++ I+  P+     SLN+S A  ++++
Sbjct: 220 WLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 263


>gi|168185518|ref|ZP_02620153.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
           [Clostridium botulinum C str. Eklund]
 gi|169296507|gb|EDS78640.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
           [Clostridium botulinum C str. Eklund]
          Length = 160

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 36/168 (21%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72
           I+L +P++ +N G + R     N   ++L L+ P      +K+   +           V 
Sbjct: 9   IVLFEPEIPQNTGNIGRTCVLTN---SKLHLIKPLGFRIDDKSLKRA--GLDYWPHLDVE 63

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +  + I               N    L+  +     ++ +   +   I+FGRE  GL
Sbjct: 64  IHESFDDMIK-----------KYPNANIYLSTTKEPKYHHDEVNYKKGDFIVFGRESSGL 112

Query: 133 TNEEIALSNAI--------ISFPV-NPLFPSLNISQAVLLMVWECMEN 171
                   + I        I  P+      SLN+S  V ++ +E +  
Sbjct: 113 P-------DYIRDKYVENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQ 153


>gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae
           Sd197]
 gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 243

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLCQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
           ATCC 14580]
 gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580]
 gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
           ATCC 14580]
 gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580]
          Length = 249

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L + +   N+G + R         + +   R    +     +S  A   I  V+V +
Sbjct: 99  ILVLDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L+E      ++  T A  + +++S+                   + ++ G E  G+
Sbjct: 159 LSRTLEEMKGRGIWVVGTDASGQQDYRSL--------------DGNMPLALVIGSEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                   + +I  P+     SLN S A  L+++E   
Sbjct: 205 GRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYEVYR 242


>gi|307207954|gb|EFN85513.1| Probable methyltransferase TARBP1 [Harpegnathos saltator]
          Length = 1333

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 17/175 (9%)

Query: 1    MTPYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
            +     ++    +G +++  LV      N+G +AR    F +  L + N  D    +  +
Sbjct: 1168 IESAHREVSQLHEGLIVVASLV--SRPPNLGGIARTCEIFGVKSLVIAN-LDCVKDKDFQ 1224

Query: 59   SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA--IVLNERIF 116
              S +A+  I+ ++V   L E +             ++   S++  ++ A  I L E  F
Sbjct: 1225 CLSVSAEKWINMIQV--TLHE-LQQYLL------EKKSAGWSIVGAEQTANSINLLEAKF 1275

Query: 117  SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + + ++ G E+ G+    I L N  +  P   +  SLN+  A  + +W+    
Sbjct: 1276 EKKTI-LVLGNEKDGIPANFIPLFNTCVEIPQVGVIRSLNVHVAAAICIWQYASQ 1329


>gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 245

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 16/173 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P   +    P +++L       N+G   R      +  + +   R    +   +  +  A
Sbjct: 86  PDFLSQLDRPFLLVLDGVTDPHNLGACLRTADAAGVDAVIIPRDRSAQLNATTKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R    +N   V    EA   L +   +G  V 
Sbjct: 146 AENVPLIRVTN------------LARTLRLLQESNIWIVGTAGEATHSLYQSKLTG-PVA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ G E  G+        + +IS P+     SLN+S A  + ++E M      
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIMRQRSAQ 245


>gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
 gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
          Length = 360

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 201 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 260

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI  L        R R  +   L       ++ E  F    + ++ G E  
Sbjct: 261 ARVV-NLNKAIQGL--------RERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 310

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G++       +AI   P++    SLN S A  + ++       +++
Sbjct: 311 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 356


>gi|88802324|ref|ZP_01117851.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
 gi|88781182|gb|EAR12360.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
          Length = 168

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 16/163 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR- 72
              I+    +  ENIGM  R   +F ++++      +  PS + +     A   I     
Sbjct: 17  PITIVCDAIRTPENIGMCFRISESFGVSKIYF---HEASPSTENKIVKKTARNTIHQTEH 73

Query: 73  -VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERW 130
             +SN KE I        TT R + N    +   + +I + +      + + ++ G ER 
Sbjct: 74  ETYSNFKELI--------TTLRAQGNKIIGIEITDKSINIQDFDFQKNEKIVLLLGSERN 125

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G+ N  I  ++  I+ P+     S+N+  ++ + ++E     +
Sbjct: 126 GVEN--INSADETIAIPMYGKNSSMNVIHSLAITLYEATSQLL 166


>gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC
           73102]
          Length = 363

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 23/182 (12%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +     Q ++     +++        N+G + R         L +   R    +      
Sbjct: 186 LADLIEQSKSVTDPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKV 245

Query: 61  SANADCVIDSVRV--FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114
           +A A   +++  V    NL  A+ +L     +IY T A       +V             
Sbjct: 246 AAGA---LENFTVSRVVNLSRALEELKEAGFWIYGTAASGSEPVHTVNF----------- 291

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                 + ++ G E  GL        + ++S P+    PSLN S A  + ++E      +
Sbjct: 292 ---KGPIVLVIGSEGEGLGMLTQRSCDFLVSIPLQGKTPSLNASVAAGMALYEIYRQRSL 348

Query: 175 SS 176
           ++
Sbjct: 349 NT 350


>gi|289450456|ref|YP_003475578.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185003|gb|ADC91428.1| RNA methyltransferase, TrmH family [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 267

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 17/154 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+   F    + L        + K   S+  +   +  V  FS+ + A  
Sbjct: 127 QDPGNLGSIWRSADAFGFDAVILAAGGASPNNRKTLRSAMGSVFHVP-VLPFSDTEAAYT 185

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +I A T          L  +  A +          + +  G E  GL++    
Sbjct: 186 FLKQENFWIAAAT----------LDGRPLAEIARRHDLP--KIALAIGNEGNGLSSYARK 233

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++A +  P++    SLN + A  ++ +E  E  
Sbjct: 234 EADATVYIPISGKAESLNAACAAGILCYEFREAQ 267


>gi|149276476|ref|ZP_01882620.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
 gi|149232996|gb|EDM38371.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
          Length = 219

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 10/157 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             V++L + +   NIG + R    F +TQL L       P  +   ++  A   +D  + 
Sbjct: 67  PLVVVLDNVRSMHNIGSIFRTGDGFAITQLCLCGITAQPPHREIEKTALGATQSVDW-KH 125

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGL 132
           + +  EA+           R        +     + +LN  +    Q   +IFG E  G+
Sbjct: 126 YESTLEAVK--------ALREEGYLIIAVEQASGSTMLNTFKPQQDQKYALIFGNEVNGV 177

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           ++E + + +  I  P      S NI  +  +++W+  
Sbjct: 178 SDEVMEVIDECIEIPQFGTKHSFNIVISAGIVLWDFF 214


>gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435]
 gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 249

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  VVILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E     +++    A N  +++ +               +   + I+ G E  G+
Sbjct: 157 LAKTIDELKEHGYWVAGAEADNATDYRDM--------------AADMPLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +       +  I  P+     SLN S A  LM++E   
Sbjct: 203 SRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYR 240


>gi|254228570|ref|ZP_04921995.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
 gi|151938952|gb|EDN57785.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
          Length = 236

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP +      +SA A   ++ V    +++ AI 
Sbjct: 39  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGARNWVE-VDTHDSIETAIT 92

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G +++   L++ 
Sbjct: 93  EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLADQ 143

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +E   P
Sbjct: 144 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 187


>gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 242

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            I   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HIPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 247

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 23/166 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73
           ++IL + Q   N G   R+  +  +  + +  P+D     +   +  +  A      + V
Sbjct: 99  ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155

Query: 74  FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL  AI  L     ++        ++  S+                  +V I+ G E 
Sbjct: 156 VTNLARAIEKLKQLGVWVIGLAGEANDSLYSMNLAD--------------SVAIVAGAEG 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G+     A  + +   P+     SLN+S A  + ++E +      
Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQRTQQ 247


>gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 269

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+     +    LV+PR G P   ++   S      +   R+  +  + +A L 
Sbjct: 132 NVGAIFRSAAALGV-DAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARL-ESWPDHLAQL- 188

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
                  + +    + +   + A+ L++        + ++ G E  G++ E +A  +  +
Sbjct: 189 -------KEQGFTVAAMELTDNAVDLDDLAARKIPKLALVLGTEGAGMSEETLAAVDLAV 241

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
             P+     SLN++ A  +  WE  
Sbjct: 242 KIPMRAGVDSLNVAAASAVAFWELR 266


>gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
 gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
          Length = 222

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 74  ILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 133

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 134 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 179

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 180 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 215


>gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 259

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAIA-- 82
           N+G +AR      +    ++ P+ G    +  A  +SA A   I   R   NL +     
Sbjct: 121 NLGAIARTAECSGVH--AIIVPKKGSAEINPDAIKTSAGALYKIPVCR-HDNLGKVGKFL 177

Query: 83  ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
               +  + +T               E        +       II G E  G++++ I +
Sbjct: 178 IDSGIQLVVST---------------EKTEESIYSVDYTAPTCIIMGAEDVGVSDDLIRI 222

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           S+ +   P+     SLN+S +  ++++E +    ++ 
Sbjct: 223 SDHLAKIPMFGEIGSLNVSVSAGVVLYEAIRQRQITK 259


>gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 230

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 15/157 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           V+IL   Q  +N G + R+   F    + +   R    +     +S+       +V+V  
Sbjct: 83  VLILDHIQDPQNFGAIIRSANVFGFKHIIIPKDRACDVTPSVLKTSSGG---FKNVKVIK 139

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++L +AI +L        +N+  +    A  + A  LN+  F  + + II G E  G++
Sbjct: 140 VNSLFDAIEEL--------KNKGFWIYASALNQQAKKLNDAKF-NEKIAIIVGNEGSGVS 190

Query: 134 NEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECM 169
              +  S+ II    +     SLN+S A  ++++   
Sbjct: 191 KTLLKHSDEIIYIEQDKESVQSLNVSVATGILLYTVF 227


>gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
           DSM 20213]
 gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
           DSM 20213]
          Length = 332

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 18/165 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F    + L   R    +  A   SA A   +   RV  N
Sbjct: 179 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 237

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +AI  L     ++                       + E  F    + ++ G E  GL
Sbjct: 238 LTKAIEGLKERGYYVVGLDGGGDKL-------------VGETGFETDPLVVVLGSEGSGL 284

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +       +AI   P++    SLN S A  + ++         +E
Sbjct: 285 SRLVRESCDAIAGIPISSSVESLNASVAAGISLYAVSRARREGAE 329


>gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 291

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 16/176 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +TP A +L  S +  ++ L   +   N+G V R       T + L+       S +   +
Sbjct: 129 LTPLA-KLDVSGRNVIVALDRVRDPGNLGTVLRTADAAGATGVVLIGETVDPFSLETVRA 187

Query: 61  SANADCVIDSVRVFS-NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +  +   +   +       E        +  T             P+  A          
Sbjct: 188 TMGSIFAVPLAKASEAEFLEWRKGFSGLVAGTHM---EGAVDYREPRYGA---------- 234

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           Q   ++ G E+ GLT     + + ++  P +    SLN++ A  +M++E    ++ 
Sbjct: 235 QPTILLMGNEQAGLTPSLARICDVLVRIPQSGRADSLNLAVATGVMLFEARRGALT 290


>gi|78779323|ref|YP_397435.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712822|gb|ABB49999.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9312]
          Length = 160

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 26/166 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           + L +P++ +N G +AR+   FN+  L L+ P      +K    +         V V  +
Sbjct: 3   VTLFEPRIPQNTGNIARSCAAFNIP-LNLIEPLGFKLEDKYLKRA--GLDYWPLVTVNKY 59

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +N K+ +A           ++   + +   K+  I L +  F   +V ++FGRE  GL +
Sbjct: 60  ANFKKFLA-----------SKQTKRIISFSKKNGIYLKDFKFQEDDV-LLFGREDSGLPD 107

Query: 135 EEIALSNAIISFPV------NPLF---PSLNISQAVLLMVWECMEN 171
             I  S+ +IS  +      N       SLN+S A  + ++E  + 
Sbjct: 108 LIIDNSDYLISIFMPNLQTENNDQKGVRSLNLSVACGIAIYEAHKQ 153


>gi|313157998|gb|EFR57404.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 178

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 13/172 (7%)

Query: 3   PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P A +    AK PV ++L + +  +N+G   R    F +  + L       P+     ++
Sbjct: 12  PTAGEFAAMAKMPVTVVLDNVRSLQNVGAFFRTGDAFAVEHIALCGITAVPPNRDIHKTA 71

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQ 119
             A+  +     +   +  I  LH          + ++ +   +    V+ +  R   G 
Sbjct: 72  LGAELTVPWS-YYETTEACIDRLH---------ADGYEVLAVEQVEGAVMLDVFRAAPGV 121

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++FG E  G+    +   +  I  P      S+N++ +  +++W     
Sbjct: 122 KYALVFGNEVMGVGQSAVDRCDGAIEIPQAGTKHSINVAVSGGVVLWSFFRR 173


>gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
           YK9]
 gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
           YK9]
          Length = 264

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 12/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   +   N+G + R+        + L        + K   S+  +   +    + +
Sbjct: 119 VVVLDGVRDPGNVGTIIRSADAVGADAVVLGRGCVDLYNPKTVRSTMGSLFHLP--VIEA 176

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L E +           + +     + A    + V            ++ G E  GL+ E
Sbjct: 177 DLLELL----------PKAQERGIRLAATSLQSAVSCYDCDWTSATWLLMGSESDGLSPE 226

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + L++  +  P+     SLN++ A  ++++E +   
Sbjct: 227 VLELADQSVIIPIRGRAESLNVAMAATVILYEALRQR 263


>gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
           17241]
 gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
           17241]
          Length = 256

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRV---FSNL 77
           +   N+G + R         L +  P+ G     A    +SA A   +   RV    S +
Sbjct: 116 EDPHNLGAIIRTAEAAGAHGLII--PKRGGAGLTAIVGRTSAGAVEHLPVARVTNLVSTI 173

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           KE  A   +IY   A      ++ L                    ++ G E +GL+    
Sbjct: 174 KELKARGVWIYGADASGARWDQTDLT---------------GPSALVIGSEGFGLSRLVR 218

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +A++S P+     SLN S A  ++++E +   
Sbjct: 219 ETCDALLSLPMRGEVNSLNASVAAGILMYEAVRQR 253


>gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18]
 gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18]
 gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha275]
 gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           OX99.30304]
 gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M6190]
 gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M13399]
 gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M0579]
 gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           ES14902]
 gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           961-5945]
 gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           G2136]
 gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M04-240196]
 gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           NZ-05/33]
          Length = 250

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      ++ A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVASGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491]
 gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491]
          Length = 250

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      ++ A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVASGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           weihenstephanensis KBAB4]
          Length = 247

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 99  ILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 158

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 159 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGNMPIGLVIGSEGKGMSR 204

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 205 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 240


>gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 251

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 18/177 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N ++    ++
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRLIKKFSHL 249


>gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           HI4320]
 gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           HI4320]
          Length = 247

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P +++L       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 87  PDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 146

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 147 AESVPLIRVTN------------LARTLRLLQEENIWIVGTAGEADHTLYQSKLTG-PLA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++ G E  G+        + +IS P+     SLN+S A  + ++E M   I
Sbjct: 194 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMRQRI 244


>gi|167751467|ref|ZP_02423594.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
 gi|167655275|gb|EDR99404.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
          Length = 262

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL + Q   NIG + R+   F++  + L        + K   S+  +   +       +
Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLP--IYCCD 175

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +EAI  L     T      + +SV   +E            Q   ++ G E  G+++  
Sbjct: 176 TEEAITLLQKGGFTVYSAELSDRSVRLGEEKLP---------QKTAVVIGNEGNGVSDTV 226

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             L +  +  P++    SLN S A  ++ WE  +
Sbjct: 227 KKLCDKSLFIPISSA-ESLNASVAASVIAWEMSK 259


>gi|26553475|ref|NP_757409.1| rRNA methylase [Mycoplasma penetrans HF-2]
 gi|26453481|dbj|BAC43813.1| rRNA methylase [Mycoplasma penetrans HF-2]
          Length = 238

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 69/160 (43%), Gaps = 15/160 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N+ K  +++L + Q   N G + R   +F +  +          +E    +S      ++
Sbjct: 85  NTDKKIILVLDEIQDPGNFGAICRTSKSFQVAGIIFKKNNQIQINETVIKTSLGTVNYLN 144

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP-KEAAIVLNERIFSGQNVGIIFGRE 128
            ++V +NL E +  L          + N+ +V     E +I L++       + +I G E
Sbjct: 145 FLKV-NNLSEVLNKL---------KKENYWTVCTALDEKSIPLSKFKTDINKLVVIVGNE 194

Query: 129 RWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVW 166
             G++  E+    S+ I+   ++    SLN+S +  ++++
Sbjct: 195 NKGVS--ELIKKDSDFIVKIEMDSSVQSLNVSVSTAIILY 232


>gi|260063174|ref|YP_003196254.1| spoU protein [Robiginitalea biformata HTCC2501]
 gi|88783268|gb|EAR14440.1| spoU protein [Robiginitalea biformata HTCC2501]
          Length = 217

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F +    L+  R G   +K  +    A   +D +  + +    +    
Sbjct: 43  HNASAVIRSCDIFGIQDAHLIEERFGNRLDKNIAM--GAQRWVD-IHRYKSTDACVH--- 96

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                 A     ++ V        V  E +     V + FG E+ GL+   I  ++A I 
Sbjct: 97  ------ALREKGYRIVATSPHQGSVSPEALPLDTPVAVFFGTEKEGLSEGLIRQADAAIQ 150

Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
            P+     SLN+S A  +++ E 
Sbjct: 151 IPMVGFTESLNVSVAAAIVLREL 173


>gi|87125512|ref|ZP_01081357.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
 gi|86166812|gb|EAQ68074.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
          Length = 277

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 22/184 (11%)

Query: 6   PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             L         +L     Q   N+G + R     ++ +L L+       S K   SS+ 
Sbjct: 101 EALPEPPGHTSFVLALDRVQDPGNLGTLLRTALAADV-ELVLLASGADPLSPKVVRSSSG 159

Query: 64  ADCVIDSVRV-------FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLN 112
           A   +   R+          L E + DL      + AT            AP E      
Sbjct: 160 AVLTLAQERLGPEERQGVRALAERLQDLRCDGLQVVAT------LVPDASAPVEVLPYW- 212

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   +   ++ G E  GL  E +A  +  ++ P +P   SLN++ A + ++ E    +
Sbjct: 213 -ELDWTRPTALVLGNEGSGLHPELLACCSHGVTLPHSPRVESLNVAAAAVPLLLERRRAT 271

Query: 173 IVSS 176
           + + 
Sbjct: 272 MTAP 275


>gi|298208325|ref|YP_003716504.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
 gi|83848246|gb|EAP86116.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
          Length = 264

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 20/155 (12%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P+   NIG + R     N+  + + NP+    +     SS           VF+N     
Sbjct: 123 PEKPGNIGALLRTADAANVDAVIIANPKTDLYNPNIIRSSVG--------CVFTN----- 169

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGLTNEEI 137
                   TT    +  K        A +     +  Q+      I+ G E  GL++E  
Sbjct: 170 ---QVAVGTTTEIISFLKKQKVNIYCAALQASEHYHLQDFTTATAIVVGTEATGLSDEWR 226

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   I  P+     S+N+S A  ++++E     
Sbjct: 227 KNATQNIIIPMQGEIDSMNVSVAAGILIYEAKRQR 261


>gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 18RS21]
 gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
 gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae CJB111]
 gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 2603V/R]
 gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 18RS21]
 gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae CJB111]
 gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
          Length = 251

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           ++    + +N     ++IL       N+G + R     N+T + +   R    +     +
Sbjct: 91  LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 150

Query: 61  SANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           S  A   +   RV +    L   + D  F I+ T                     ++   
Sbjct: 151 STGAVEHVPIARVTNLSQTLDT-LKDKEFWIFGT--------------DMNGTPSHKWNT 195

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G  + ++ G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 196 KG-KLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 251


>gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
          Length = 276

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N G + R      +  + +   R+   +     +S  A   +   ++ +
Sbjct: 128 IVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGAIEHMKIAKI-T 186

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI  L                  A         +  F G  V +I G E  G+   
Sbjct: 187 NINNAIDKL---------KEQGIWVYGADMNGENYCYDVDFRGA-VALIIGSEGKGILKL 236

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++  P+     SLN S A  ++++E ++  
Sbjct: 237 TKNKCDVLVKIPMVGNISSLNASVAGGILMYEILKQR 273


>gi|145295523|ref|YP_001138344.1| hypothetical protein cgR_1451 [Corynebacterium glutamicum R]
 gi|140845443|dbj|BAF54442.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 271

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 15/160 (9%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSN 76
           V+ +   N G + R         +            KA  SSA +   I   R   +   
Sbjct: 124 VETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADV 183

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +  +    I AT+A    +        + A  L  +         +FG E  GL    
Sbjct: 184 LGQLRSKGLQILATSADGEVDL-------DDADELLAK-----PTAWLFGNEAHGLDESL 231

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +A ++  +  P+     SLN++ A  + ++E  +      
Sbjct: 232 LAQADHRVRIPIRGRAESLNLATAASICLYESSKALFAGE 271


>gi|86142668|ref|ZP_01061107.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85830700|gb|EAQ49158.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 175

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 28/163 (17%)

Query: 17  IILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID---SV 71
            +LV        N G + R      +  +   N    + S + + ++ +++ ++      
Sbjct: 22  FVLVCDGINSPANAGSLFRLADALGIAHIYFCNTTIQFESTRLKRTARSSEKLVPYSPDA 81

Query: 72  RVFSNL---KEAIADLHFI---YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V + L   KE   D H I     TT+      K + +  E A          + + ++ 
Sbjct: 82  DVITTLNGLKE--KDYHLIGLELTTTS------KPLASLNEYAF---------KKIALVL 124

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           G ER+G+  + + + + I   P+     S+N+SQA  +  ++ 
Sbjct: 125 GHERYGICEDVLNILDHITYIPMRGKNSSMNVSQAAAIAAYQL 167


>gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali
           symbiont]
          Length = 244

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 16/172 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  ++ A
Sbjct: 86  PDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAPLNATAKKVASGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  V 
Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEYNVWIVGTAGEADHNLYQSKMTGAMV- 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +     
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRQA 244


>gi|328947262|ref|YP_004364599.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328447586|gb|AEB13302.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 255

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 64/167 (38%), Gaps = 20/167 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANADCVID 69
           K   +IL       N+G + R+   F +  + +  P D   S     +   +      + 
Sbjct: 100 KEDAVILDRVGNANNLGAIVRSAAFFGIKNIVI--PLDESQSSITTSSYRVAEGGMEFV- 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           ++    ++   + D+       AR   + K+     E  ++  E+        ++ G E 
Sbjct: 157 NIYSVRSIPFLLKDMK---GKMARFGTSLKAQKKVSEMKLLCQEK-----PALVVLGNEE 208

Query: 130 WGLTNEEIALSNAIISFP------VNPLFPSLNISQAVLLMVWECME 170
            G++ E     ++++  P        P   SLN++QA  ++++E  +
Sbjct: 209 KGISEEVAQNCDSLVIIPFAGMGEAGPKVDSLNVAQAASVIMYELKK 255


>gi|318057501|ref|ZP_07976224.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080806|ref|ZP_07988138.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 266

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 28/177 (15%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P AP        P+++L +P+   N G V R    F                  +   + 
Sbjct: 114 PPAPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFG----------------ASGVVTT 157

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
               +     V      A A LHF    T   R     + A    A         G  V 
Sbjct: 158 GDLDLWHPAVV-----RAGAGLHFA---TPVARRAVPELPAGPLWAFDAEGEDLRGVRVP 209

Query: 123 ----IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               + FG ER GLT      ++ +++ P+ P   S N++ +V + ++     +   
Sbjct: 210 DDALLAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYHWSLGAGRP 266


>gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640]
 gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06]
          Length = 250

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
 gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 253

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 21/165 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R         L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               EA + L ++  +G  + II G E  G+
Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                   + ++  P+     SLN+S A  + ++E +    V + 
Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 249


>gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
           MED121]
 gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
           MED121]
          Length = 270

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 23/171 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC------ 66
              +IIL       N+G   R+        L +   +    +      +  A        
Sbjct: 117 PPLIIILDGITDPHNLGACLRSADAAGAHALVMPKDKSAPLNATVSKVACGAAESMPVYA 176

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V +  R    L++      +I+ T                 A              I+ G
Sbjct: 177 VTNLARTMKKLQDK---GVWIFGTAG--------------EASQTIYEQDLTIPSAIVMG 219

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E  G+        + ++  P+  +  SLN+S A  + ++E +   IV   
Sbjct: 220 AEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGICLYEAVRQRIVKKA 270


>gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 21/173 (12%)

Query: 6   PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61
           P L  +   P    IL       N+G   R+     +    +V PRD     +  A+  +
Sbjct: 86  PALLENLDKPPFLLILDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVA 143

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A   +  +RV +             A T R     N   V    EA   L +   +G 
Sbjct: 144 CGAAETVPLIRVTN------------LARTMRFLQEQNIWIVGTAGEADHNLYQSKMTG- 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 PMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|197287001|ref|YP_002152873.1| methyltransferase [Proteus mirabilis HI4320]
 gi|227354755|ref|ZP_03839173.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|194684488|emb|CAR46253.1| putative methyltransferase [Proteus mirabilis HI4320]
 gi|227165198|gb|EEI50026.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|302378451|gb|ADL32286.1| WemF [Proteus mirabilis]
 gi|302378467|gb|ADL32301.1| WemO [Proteus mirabilis]
          Length = 167

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 15/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71
           I+L +P++  N G + R   N     L L+ P  G+  +  R   A  D      +    
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             ++ L+     L    A +      F   L  K      N     G    ++FG E  G
Sbjct: 62  DYYAFLES--EGLSPDNAQSPTGARLF--ALTTKGTPAHSNVSYQDGDY--LLFGPETRG 115

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +        I  P+     S+N+S  V ++V+E    
Sbjct: 116 LPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157


>gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
           Uo5]
 gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
           Uo5]
          Length = 260

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 18/176 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N ++    N
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRLIKKVSN 248


>gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 287

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 17/177 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L + +   N G V R         + L +      + KA  +S  + 
Sbjct: 116 EEVLAARPRLVALLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDVYNPKAVRASVGSL 175

Query: 66  CVIDSVRVFSNLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +       +++ A+       +  + A  A +R+    +           ++   G  
Sbjct: 176 FHLPVAVGV-SVERAVEGLRAEGVRVLAADGAGDRDLDAEL-----------DKGTMGGP 223

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
              +FG E WGL  E  AL++A++  P++    SLN++ A  + ++         + 
Sbjct: 224 TAWVFGNEAWGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASARAQRAPAG 280


>gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           Ch1-1]
 gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           Ch1-1]
          Length = 247

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   G  +ILV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T        KS+   +             
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG---EATKSLYDTELDGP--------- 191

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +    V  
Sbjct: 192 --VALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRAVKK 247


>gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab]
          Length = 270

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 22/177 (12%)

Query: 4   YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            +P  +    G V   V+  Q   N+G + R +       L L        + K   +SA
Sbjct: 106 ASPPPEALRLGLV---VETLQDPGNLGSLIRVVAATGADGLWLSADSVDPENPKVLRASA 162

Query: 63  NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                    +V S+L   I         + A T          LAP       ++     
Sbjct: 163 G-QWFRRPPQVLSDLPAWIQSCRRQGIQVLAAT----------LAPLATCYWDHDLT--- 208

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +    + G E  GL    I L++A +  P+     SLN++    L+++E +      
Sbjct: 209 RPTLFLLGNEGAGLQESTIQLADAQVRIPMAAGVESLNVAMTGGLLLYEALRQQRAQ 265


>gi|304389322|ref|ZP_07371287.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327440|gb|EFL94673.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 275

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 16/166 (9%)

Query: 6   PQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P +  S +G   +IL   Q   N+G + R       + + +        S K   +S  +
Sbjct: 113 PSVTGSPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              + + R F +L   +  L      I  T+     +   +L P  A         S + 
Sbjct: 173 VFHVPTPR-FQDLAAVVKALRAEGWTIVGTSL----SGDVMLTPVTAGTW------SNKK 221

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           V  + G E  GL   E +  + ++S P+     SLN++ A  L +W
Sbjct: 222 VAWVMGNEAHGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267


>gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 254

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 15/164 (9%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L+N     +++L       N+G + R+   F    + +VN      +EKA  S+ 
Sbjct: 102 PSPSPLKNIRS--LLVLNQINDPGNLGTLIRSALAFGWEGIFIVNQSCDIFNEKAIRSAR 159

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +   +   +L+E    L     TT     +   +             I   + V 
Sbjct: 160 GATFRLPYRK--GDLQELEEILTHNKLTTWVADVSGTPMQD-----------ITPPEKVA 206

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++   E  G+++    L +  ++ P++    SLN++ A  +++ 
Sbjct: 207 LVLSNEARGVSSSTHPLFSQHVTIPMSGKMESLNVAVAGAILLH 250


>gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           28-1]
 gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           28-1]
 gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 354

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             +    ++ L       N+G V R+   F    + +   R    +  A   SA A  ++
Sbjct: 201 PPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIV 260

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +  +NL  A+ DL    A                   + L +   +   + ++ G E
Sbjct: 261 PVAQ-ATNLTRALQDLKRAGAFVIGLDGGGD---------VALPDLQLTDVPLVVVTGSE 310

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++       + I+S P+ P   SLN + A  + +++ 
Sbjct: 311 GRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350


>gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
 gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
 gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
 gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
 gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
 gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
          Length = 212

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   I   RV +  
Sbjct: 64  ILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLS 123

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+ + +++               +     +G++ G E  G++ 
Sbjct: 124 RTIDELKERGLWIAGTDAKGKTDYR--------------NLDGKMPIGLVIGSEGKGMSR 169

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + +I+ P+     SLN S A  L+++E   
Sbjct: 170 IIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 205


>gi|227546236|ref|ZP_03976285.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133084|ref|YP_004000423.1| spou2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481810|ref|ZP_07940838.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688754|ref|YP_004208488.1| rRNA methylase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690746|ref|YP_004220316.1| rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213217|gb|EEI81089.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|291517171|emb|CBK70787.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
 gi|311774079|gb|ADQ03567.1| SpoU2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916747|gb|EFV38141.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455602|dbj|BAJ66224.1| putative rRNA methylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460090|dbj|BAJ70710.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 292

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 20/150 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
             N G V RA        +  V+      + K   S+A +   +    +  +  E     
Sbjct: 142 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 199

Query: 82  ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            D +       +Y T  R          P+    VL ++        ++FG E  GL  +
Sbjct: 200 GDHNMDVWAADVYGTEERK---------PESLPAVLADKAAVEAPKAVLFGNEARGLEPD 250

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +     I+S P+     SLN+  +  +M+
Sbjct: 251 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|169824492|ref|YP_001692103.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302380508|ref|ZP_07268973.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233775|ref|ZP_07320429.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           BVS033A4]
 gi|167831297|dbj|BAG08213.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302311451|gb|EFK93467.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495209|gb|EFL54961.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           BVS033A4]
          Length = 155

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L++P+   N G + R     N   T+L LV P      +K    S       D V   
Sbjct: 4   IVLLEPEKPSNTGNIGRTCVLTN---TRLHLVRPFSFRLDDKLLKRS--GMDYWDKVDLV 58

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  ++ E +  +                V   +  A      +       ++FG+E  G+
Sbjct: 59  IHDDIDEFLEYI-----------KGNDRVFYVETFATHYYHEVEYKDGDYLVFGKESSGI 107

Query: 133 TNEEIALSNAI-ISFPVNPLF-PSLNISQAVLLMVWECMEN 171
             + ++      I  P+N     SLN++ +  ++++E +  
Sbjct: 108 DKDLVSKHKEHSIKIPMNMEIDRSLNLANSCNIVLFEALRQ 148


>gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
 gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 242

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 11/150 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R+   F+++ + L        +      +  A   I+ V+V  NL      +++
Sbjct: 104 NLGAIIRSAAAFDISTIILPENNSIEENGTIAKIAVGALEKINLVKV-KNL---YNTINY 159

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           +       ++ F  +      +  L E+ F       + G E  GL N      + +I  
Sbjct: 160 L------KKHEFWIIGLDLNDSNQLTEQTFH-SKTAFVLGSENKGLRNLTRQQCDFLIKI 212

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           P++    SLN++ A  ++ +E  + SI   
Sbjct: 213 PMSHKTESLNVAGAATIIFYESFKFSIKQQ 242


>gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           ATCC 14018]
          Length = 331

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI  L        R R  +   L       ++ E  F    + ++ G E  
Sbjct: 232 ARVV-NLNKAIQGL--------RERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 281

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G++       +AI   P++    SLN S A  + ++       +++
Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 327


>gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           409-05]
 gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           409-05]
          Length = 331

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI  L        R R  +   L       ++ E  F    + ++ G E  
Sbjct: 232 ARVV-NLNKAIQGL--------RERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 281

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G++       +AI   P++    SLN S A  + ++       +++
Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 327


>gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 354

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             +    ++ L       N+G V R+   F    + +   R    +  A   SA A  ++
Sbjct: 201 PPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIV 260

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +  +NL  A+ DL    A                   + L +   +   + ++ G E
Sbjct: 261 PVAQ-ATNLTRALQDLKRAGAFVIGLDGGGD---------VALPDLQLTDVPLVVVTGSE 310

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++       + I+S P+ P   SLN + A  + +++ 
Sbjct: 311 GRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350


>gi|154488654|ref|ZP_02029503.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
           L2-32]
 gi|154082791|gb|EDN81836.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
           L2-32]
          Length = 290

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 18/160 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-----RVFSNLKE 79
             N G V R+        + LV+      + K   S+A +   +  V       F    E
Sbjct: 140 PGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMGTDEYFDWCAE 199

Query: 80  ---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+     +Y T AR       VLA  ++               ++FG E  GLT + 
Sbjct: 200 RGLAVYAAD-VYGTDARPPEPLTDVLAVPQSLAQAK---------TVLFGNEARGLTQDV 249

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   + I+S P+     SLN+  +  +M+     +S V  
Sbjct: 250 LERVDRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVER 289


>gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 246

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 11/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+L +     N+G + R      +  + +   R    +     SSA A   +   RV +
Sbjct: 98  IIMLDEITDPHNLGAIIRTADAAGVHGVVVTRRRSALLTPVVAKSSAGAVEYVPVARV-T 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL ++I  L            N   V         +         + I+ G E  GL   
Sbjct: 157 NLVQSIKILQ----------ENGIWVAGADMEGDKVYWEAPLSGPIAIVIGGEGKGLGRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++  P+     SLN S A  L+ +E +   
Sbjct: 207 VKEKCDFLVRLPMQGKISSLNASVATALLAYEVVRQR 243


>gi|50842892|ref|YP_056119.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
 gi|289426403|ref|ZP_06428146.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|50840494|gb|AAT83161.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
 gi|289153131|gb|EFD01849.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|313808089|gb|EFS46566.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA2]
 gi|313813590|gb|EFS51304.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL025PA1]
 gi|313819728|gb|EFS57442.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL046PA2]
 gi|313823743|gb|EFS61457.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL036PA2]
 gi|313829638|gb|EFS67352.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL063PA2]
 gi|313840042|gb|EFS77756.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL086PA1]
 gi|314919433|gb|EFS83264.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL050PA1]
 gi|314923955|gb|EFS87786.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL001PA1]
 gi|314954516|gb|EFS98922.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL027PA1]
 gi|314962173|gb|EFT06274.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL002PA2]
 gi|314963802|gb|EFT07902.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL082PA1]
 gi|314976761|gb|EFT20856.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL045PA1]
 gi|314984483|gb|EFT28575.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA1]
 gi|314986660|gb|EFT30752.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA2]
 gi|314990775|gb|EFT34866.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA3]
 gi|315079654|gb|EFT51644.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL053PA2]
 gi|315100540|gb|EFT72516.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL046PA1]
 gi|327327988|gb|EGE69757.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL103PA1]
 gi|327329586|gb|EGE71344.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL096PA2]
 gi|327444366|gb|EGE91020.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL043PA2]
 gi|327452174|gb|EGE98828.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL092PA1]
 gi|327452807|gb|EGE99461.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA3]
 gi|327457884|gb|EGF04539.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL083PA2]
 gi|328755365|gb|EGF68981.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA1]
 gi|328760149|gb|EGF73726.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL099PA1]
 gi|332675828|gb|AEE72644.1| tRNA/rRNA methyltransferase YsgA [Propionibacterium acnes 266]
          Length = 273

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 14/164 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +L + A    +I    +   N G V R    F    + L        + K   SS  + 
Sbjct: 113 RELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSI 172

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             +  V V   L +A+               +  SVLA       L+    SG   + + 
Sbjct: 173 FHLP-VVVGVELADAVE----------WAHQHQMSVLAADGGGHSLDVVARSGCLKRPIA 221

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + G E WGL   + AL++ I+  P+     SLN+S A  ++++
Sbjct: 222 WLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 265


>gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 269

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+     +    LV+PR G P   ++   S      +   R    L+    DL 
Sbjct: 132 NVGAIFRSAAALGV-DAVLVSPRCGDPLYRRSVRVSMGTVFQVPWAR----LESWPGDLA 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
            +     R +    + +   + A+ ++E        + ++ G E  G++ E ++  +  +
Sbjct: 187 VL-----REQGFTVAAMELTDDAVDVDELAARNLDKLALVLGTEGAGMSPETLSAVDLAV 241

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
             P+     SLN++ A  +  WE  
Sbjct: 242 RIPMRAGVDSLNVAAASAVAFWELR 266


>gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           FB024-16]
 gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           FB024-16]
          Length = 354

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             +    ++ L       N+G V R+   F    + +   R    +  A   SA A  ++
Sbjct: 201 PPTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIV 260

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +  +NL  A+ DL    A                   + L +   +   + ++ G E
Sbjct: 261 PVAQ-ATNLTRALQDLKRAGAFVIGLDGGGD---------VALPDLQLTDVPLVVVTGSE 310

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++       + I+S P+ P   SLN + A  + +++ 
Sbjct: 311 GRGISRLVRDTCDQIVSIPIAPRMESLNAAVATGIALYQI 350


>gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 243

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    + P   IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIAGLENPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEENIWIVGTAGEADHTLYQSKMTG-RMA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 260

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 25/164 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFS 75
           IL   Q   N+G + R     N+  + L +      + K   +SA A          + S
Sbjct: 114 ILERLQDPGNLGTIIRTAVATNIDGIWLSSDSVNIDNSKVIRASAGAWF---KAPLVITS 170

Query: 76  NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           NLK+ +       ++ + AT    + N+  +   +                 I+ G E  
Sbjct: 171 NLKDIVMNYKNQGVN-VVATLPNAKKNYWDLDLTR--------------PTIILLGNEGS 215

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           GL+ + + +++  +  P+     SLN++    L+++E      +
Sbjct: 216 GLSEQLVNMADETVKIPLEQNIESLNVAVTGALILYEAKRQRTL 259


>gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
           carboxydivorans Nor1]
 gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
           carboxydivorans Nor1]
          Length = 248

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           Q Q   + P ++L+ + +   N+G + R      +  + L   R    S     +SA A 
Sbjct: 88  QAQTKGEAPFLVLLDELEDPHNVGAILRTADATGVHGVLLPKRRSCPLSATVAKTSAGAI 147

Query: 66  CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   R+      L++      ++                   A             + 
Sbjct: 148 EYVPVARIGNIVQTLEKLKKAGLWVVG--------------ADMAGDKAYYETDLTGPLV 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + ++  P+     SLN S A  L+++E +   
Sbjct: 194 VVVGSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILYEVLRQR 243


>gi|62390273|ref|YP_225675.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325610|emb|CAF21399.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 282

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 15/160 (9%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSN 76
           V+ +   N G + R         +            KA  SSA +   I   R   +   
Sbjct: 135 VETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADV 194

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +  +    I AT+A    +        + A  L  +         +FG E  GL    
Sbjct: 195 LGQLRSKGLQILATSADGEVDL-------DDADELLAK-----PTAWLFGNEAHGLDESL 242

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +A ++  +  P+     SLN++ A  + ++E  +      
Sbjct: 243 LAQADHRVRIPIRGRAESLNLATAASICLYESSKALFAGE 282


>gi|319440343|ref|ZP_07989499.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 299

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 11/157 (7%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V+     N G + R         +            KA  SSA +   +  V   +++ E
Sbjct: 148 VETAEPGNAGALIRVADATGAAGVIFAGETVDPQGGKAVRSSAGSLFHLP-VSRHTSIPE 206

Query: 80  AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +  LH     + AT+         V   + +     E    GQ V  +FG E  GL + 
Sbjct: 207 VVERLHEQGYVVLATSG-----DGDVSLDEASIAPAGETPLLGQRVAWLFGNEAHGLGDW 261

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  L++  +S P+  L  S N+  A  + ++E    +
Sbjct: 262 Q-DLADVRVSIPMQGLAESFNLVTAAAVCLYETARVA 297


>gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa
           SC2]
 gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa
           SC2]
          Length = 248

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 20/165 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L + +   N+G + R         + +   R    +     +SA A   +   RV + 
Sbjct: 99  ILLDEIEDPHNLGSILRTADCTGAHGIIVPKRRSAAVTVTVSKTSAGAVEYVPVARVSNL 158

Query: 76  --NLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +     +  ++  T  TA +      V                   V I+ G E  G
Sbjct: 159 GQTIDRLKEEGVWVVGTDVTATDPVFGNGVFT---------------GPVAIVIGNENKG 203

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        + ++  P+     SLN S A  ++++E +      S
Sbjct: 204 MGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYEVLRGRQARS 248


>gi|302378477|gb|ADL32310.1| WenD [Proteus vulgaris]
          Length = 166

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 15/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71
           I+L +P++  N G + R   N     L L+ P  G+  +  R   A  D      +    
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             ++ L+     L+   A +      F   L  K      N     G    ++FG E  G
Sbjct: 62  DYYAFLES--EGLNPDNAQSPTGARVF--ALTTKGTPAHSNVSYQDGDY--LLFGPETRG 115

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +        I  P+     S+N+S  V ++V+E    
Sbjct: 116 LPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157


>gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 297

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 7/155 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   +   N G V R         + L +      + K   +S  +   +  V     +
Sbjct: 145 VLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPVVTGVP-V 203

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +EA+A L               +  A  +      +R   G     +FG E WGL  E  
Sbjct: 204 EEAVAGLR------GIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEETR 257

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           AL++A++  P++    SLN++ A  + ++      
Sbjct: 258 ALADAVVRVPLHGKAESLNLATAAAVCLYASARAQ 292


>gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 289

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 12/154 (7%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVI 68
           +   G +++L       N+G V R+   F + +  ++  R   P       S+  A   +
Sbjct: 122 DPTHGALLVLDQITDPHNVGAVLRSAAAFGI-RAVIMQDRKAPPLFGTVCKSAVGAAERV 180

Query: 69  DSVRVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             VRV      L E       +         +          A+   +    G  + ++ 
Sbjct: 181 AHVRVTNIADTLLEFSKAGRHVLGLAGEAELDL-------ATALAAPDGKGWGPGLVLVM 233

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           G E  GL        + ++  P+     SLN+S 
Sbjct: 234 GSEDKGLRQRVAECCDQLVRIPMTDTVESLNVSN 267


>gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400]
 gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 247

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   G  +ILV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T        KS+   +             
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG---EATKSLYDTELDGP--------- 191

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +    V  
Sbjct: 192 --VALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSVKK 247


>gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
 gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia
           coli AA86]
 gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
          Length = 243

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|213692751|ref|YP_002323337.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524212|gb|ACJ52959.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458909|dbj|BAJ69530.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 292

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 20/150 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
             N G V RA        +  V+      + K   S+A +   +    +  +  E     
Sbjct: 142 PGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 199

Query: 82  ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            D +       +Y T  R          P+    VL ++        ++FG E  GL  +
Sbjct: 200 GDHNLDVWAADVYGTEERK---------PESLPAVLADKAAVEAPKAVLFGNEARGLEPD 250

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +     I+S P+     SLN+  +  +M+
Sbjct: 251 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|120436002|ref|YP_861688.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117578152|emb|CAL66621.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 174

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 69/168 (41%), Gaps = 23/168 (13%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------ 64
            K P+I+L+ +     N+G + R    F + ++          S + + ++ N       
Sbjct: 15  RKFPIILLLDNITSEANLGSMFRLADAFGVEKIVFCGSEPNLQSNRLKRTARNTFKTVQF 74

Query: 65  DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   DSV+   NLK E   ++     +++    +F                +   + + +
Sbjct: 75  EFFEDSVKTIKNLKTEGYKNIAIEITSSSNPIGSF---------------SLNEDEKLVL 119

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I G ER G++ E + L + +    +     S+N++Q+V + ++E  + 
Sbjct: 120 IAGNERHGISAEVLNLCDELYHIEMFGENSSMNVAQSVGIALYEITKA 167


>gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC
           H10407]
          Length = 243

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|251788493|ref|YP_003003214.1| putative methyltransferase [Dickeya zeae Ech1591]
 gi|247537114|gb|ACT05735.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
          Length = 397

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 14/148 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    LVN      S  A  ++   A+ V         L +A+A 
Sbjct: 260 PHNLGGIMRSCAHFGVKG-VLVNDASQLESGAAVRTAEGGAEHV--KAISAEGLVDALAQ 316

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      R    +++           ++       I+ G+E  GL++      +  
Sbjct: 317 F----------RAAGYTIVTTSSHKGTTLSKVALPAKSVIVLGQEGDGLSDSAWQQGDVK 366

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        SLNIS A  +++ E    
Sbjct: 367 VSIDGTGNVESLNISVATGILLAEWWRQ 394


>gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
 gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
          Length = 257

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 13/171 (7%)

Query: 3   PYAPQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P   +L +  K P   L++  Q   N+G + R      +T + +        + K   S+
Sbjct: 96  PSIEELLHKEKNPCFFLLENLQDPGNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVIRST 155

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A   +  V +  +L E I  L          + N  SV A      V  ++ +   + 
Sbjct: 156 MGAIFRVPFV-IADSLPEVIFQL----------KQNGVSVYAGHLKGDVFYKQDYRDGS- 203

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + G E  GLT+E  AL++  I  P+     SLN + +  ++++E M   
Sbjct: 204 AFLIGNEGNGLTDEITALADYKIKIPMKGKVESLNAAVSATILMYETMRQR 254


>gi|23465637|ref|NP_696240.1| rRNA methylase [Bifidobacterium longum NCC2705]
 gi|23326310|gb|AAN24876.1| possible rRNA methylase [Bifidobacterium longum NCC2705]
          Length = 294

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 20/150 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
             N G V RA        +  V+      + K   S+A +   +    +  +  E     
Sbjct: 144 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 201

Query: 82  ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            D +       +Y T  R          P+    VL ++        ++FG E  GL  +
Sbjct: 202 GDHNMDVWAADVYGTEERK---------PESLPAVLADKAAVEAPKAVLFGNEARGLEPD 252

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +     I+S P+     SLN+  +  +M+
Sbjct: 253 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 282


>gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 255

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 94  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 151

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 152 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------ST 197

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 198 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254


>gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
           CS-328]
 gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
           CS-328]
          Length = 304

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 18/173 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +T    Q +++   PV++ V       N+G + R         L L   R    +     
Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIVRTAEAIGAQGLILPQRRAVGINATVMK 193

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            +A A       RV +   +L E  +   +IY T A     F+ +        ++     
Sbjct: 194 VAAGALETFPVARVINLNRSLTELKSAGFWIYGTVA---GEFQPLYNANLTGAIV----- 245

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                 ++ G E  GL++      + ++S P+    PSLN+S A  + ++E  
Sbjct: 246 ------LVVGSEGEGLSHAIAENCDVLLSIPLQGTIPSLNVSVATGMALYEIF 292


>gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           peroris ATCC 700780]
 gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           peroris ATCC 700780]
          Length = 242

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 64/170 (37%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRSVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  +I+ T                     ++   SG  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWIFGT--------------DMNGTPCHKWNTSG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P++    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNRL 242


>gi|313826065|gb|EFS63779.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL063PA1]
          Length = 273

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 14/164 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +L + A    +I    +   N G V R    F    + L        + K   SS  + 
Sbjct: 113 RELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSI 172

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             +  V V   L +A+               +  SVLA       L+    SG   + + 
Sbjct: 173 FHLP-VVVGVELADAVE----------WAHQHQMSVLAADGGGHSLDVVARSGCLKRPIA 221

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + G E WGL   + AL++ I+  P+     SLN+S A  ++++
Sbjct: 222 WLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 265


>gi|86134820|ref|ZP_01053402.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85821683|gb|EAQ42830.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 177

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 15/167 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGEN-IGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +   K P+I+++D     N IG V R    F + ++ L       P++    ++  A 
Sbjct: 16  EFKAVEKTPIIVILDNVRSLNNIGSVFRTSDAFLIDKIYLCGISATPPNKDIHKTALGAT 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVG 122
             +D   V   L         +     + +     VL+ ++A        F+    +   
Sbjct: 76  ESVDWEYVEDTL-------TLV----KKLKKEGIKVLSIEQAENSTMLDTFTPKLAEKYA 124

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           I+ G E  G+  E I  S+  I  P      SLNIS    +++W+  
Sbjct: 125 IVMGNEVKGVQQEVINASDFCIEIPQLGTKHSLNISVTTGVVIWDLF 171


>gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 235

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 13/161 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  V R      + ++  V  +        R ++  +   +       N+ +A+A+L
Sbjct: 30  PHNVSAVVRTCDAVGIHRVHTVWEKKYQFR---RGTAMGSQQWVRQTN-HDNINDAMAEL 85

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   + +     V    + A+   + I   +   I+FG+E++G ++E  A+++  I
Sbjct: 86  --------KGQGMQVLVTHLSDTAVDFRD-IDYTKPTAILFGQEKYGASDEAKAIADQDI 136

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             P+  +  SLN+S A  L+++E      ++   N ++   
Sbjct: 137 VIPMMGMVQSLNVSVAAALVLYEAQRQRTIAGMYNTQQLPE 177


>gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
 gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
          Length = 246

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 23/173 (13%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           ++ +   GP    IL       N+G   R      +    ++ PRD     +   +  + 
Sbjct: 87  EVLDEIVGPAFLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNSTVQRVAC 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    ++E      ++  T               + A      I + Q
Sbjct: 145 GAADTVPYITVTNLARTMRELKERGVWLVGT--------------DDQASHDMHAIDARQ 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  + G E  G+        + +++ P+     SLN+S A  + ++E +   
Sbjct: 191 PMAWVMGAEGEGMRRLTRETCDELVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
           tundripaludum SV96]
 gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
           tundripaludum SV96]
          Length = 248

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 50/169 (29%), Gaps = 31/169 (18%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L + Q   N G   R      +  + +        +      ++ A             
Sbjct: 101 VLDNVQDPHNFGACLRTADATGVHGVIITKDNATGITPTVCKVASGA------AETVP-- 152

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----------IIFGR 127
                    +Y  T  +R         KE  I +                     ++ G 
Sbjct: 153 ---------VYQVTNLSRTLRWL----KEQGIWVMGAAGEATQTAYQTDFTVPLALVVGA 199

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E  GL        + ++  P+     SLN+S A  ++++E +   +++S
Sbjct: 200 EGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYETVRQRLLAS 248


>gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
           PRL2010]
 gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
           PRL2010]
 gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 332

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +P  + +A+   I L      +N+G V R+   F    + L   R    +  A   SA A
Sbjct: 166 SPSARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGA 225

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I   RV  NL +AI         + R R  +   L       ++ E  F    + ++
Sbjct: 226 AAHIPVARVV-NLTKAIE--------SMRERGYYTVGLD-GGGDKLVGETGFETDPLIVV 275

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            G E  GL+       +AI   P+  +  SLN S A  + ++
Sbjct: 276 LGSEGKGLSRLVRESCDAIAGIPITSMVESLNASVAAGISLY 317


>gi|262392639|ref|YP_003284493.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
 gi|262336233|gb|ACY50028.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
          Length = 227

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP +      +SA A   ++ V    +++ AI 
Sbjct: 30  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGARNWVE-VDTHDSIETAIT 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G +++   L++ 
Sbjct: 84  EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +E   P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178


>gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes
           MGAS315]
 gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus
           pyogenes MGAS315]
 gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
          Length = 248

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  A   ++IL       N+G + R     N+  + +   R    +     +S  A   I
Sbjct: 96  EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVCVTPVVSKTSTGAVEHI 155

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV +    L +  A   +I+ T             P +          +   + ++ 
Sbjct: 156 PIARVTNLSQTLDKLKARGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 200

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++       + +I+ P+N    SLN S A  ++++E   N 
Sbjct: 201 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 259

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +   +IL   Q   N+G + R      +  + +        S K   ++  A   
Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166

Query: 68  IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++ V      +   A LH  + AT++  R+    V                G+ VG +FG
Sbjct: 167 LNIVEHC-TFESMHARLHVPLLATSSHARHAVFDVPL--------------GKPVGWVFG 211

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G++ + +++    IS P      SLN++ A  + ++E +   
Sbjct: 212 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQR 256


>gi|46191103|ref|ZP_00120535.2| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|189439683|ref|YP_001954764.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|296453794|ref|YP_003660937.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|189428118|gb|ACD98266.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|296183225|gb|ADH00107.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 292

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 20/150 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
             N G V RA        +  V+      + K   S+A +   +    +  +  E     
Sbjct: 142 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 199

Query: 82  ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            D +       +Y T             P+    VL ++        ++FG E  GL  +
Sbjct: 200 GDHNMGVWAADVYGT---------EECKPESLPAVLADKAAVEAPKAVLFGNEARGLEPD 250

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +     I+S P+     SLN+  +  +M+
Sbjct: 251 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF]
 gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071]
 gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071]
          Length = 273

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 22/157 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSNLK 78
            N+G   R      +    L+ PR   P   +A   S  A   +   R+         +K
Sbjct: 131 ANLGAAFRNAAALGV-DAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIK 189

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A        A    +R+     L  +E              + ++FG E  GLT   + 
Sbjct: 190 QA--GFTLA-AFCLSDRSLTLDALVAREDP-----------RLALLFGSEGPGLTPAALT 235

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            ++  +  P+     SLN++ A  ++ +   +N    
Sbjct: 236 AADLHVRIPMQAGIDSLNVAAATAVVFYATRKNGPSG 272


>gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
           NCTC 12261]
 gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
           NCTC 12261]
          Length = 242

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 61/170 (35%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKGEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|281425955|ref|ZP_06256868.1| RNA methylase, SpoU family [Prevotella oris F0302]
 gi|299142398|ref|ZP_07035530.1| RNA methylase, SpoU family [Prevotella oris C735]
 gi|281399848|gb|EFB30679.1| RNA methylase, SpoU family [Prevotella oris F0302]
 gi|298576120|gb|EFI47994.1| RNA methylase, SpoU family [Prevotella oris C735]
          Length = 179

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 14/172 (8%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P V++L D +   N+G V R+   F +  + L       P+ +   ++   +
Sbjct: 16  EFKEAEKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITATPPNAEIHKTALGGE 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE----RIFSGQNV 121
             +   + F   +EA+  LH            F   +   E + +L E    +  + +  
Sbjct: 76  DSVAW-KYFERTEEAVEALHH--------DGYFVYSIEQVEGSTMLQELTIDKPLTSKGY 126

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +I G E  G+  + I +S+  +  P      SLN+S    +++WE +   +
Sbjct: 127 AVIMGNEVKGVKQQVIDMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFVRKML 178


>gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
           hollisae CIP 101886]
 gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
           hollisae CIP 101886]
          Length = 245

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 15/167 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L       +++L       N+G   R      +    +V P+D     +  AR  +  A 
Sbjct: 90  LDGKENPLLLVLDGVTDPHNLGACLRNADAAGVCA-VIV-PKDKSAQLNATARKVAVGAA 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V+  VRV           +      A        V    EA   + +   +G  + I+ 
Sbjct: 148 EVVPLVRVT----------NLARTMRALQERGIWFVGTAGEATHDVYDAKLTG-PLAIVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 197 GAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 267

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 12/172 (6%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A ++ N     V + V      N G + R         +          S K   +SA 
Sbjct: 108 SAGKILNGKPSLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAG 167

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   +   R   N+K+ +  L          R +   ++A      V        Q    
Sbjct: 168 SLFHVPVAR-DPNIKDVLGQL----------RKSGMQIVATAADGEVDLAEADLSQPTAW 216

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +FG E  GL  E +  ++  +  P+     SLN++ A  + ++E  +    S
Sbjct: 217 LFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQEQS 267


>gi|145225467|ref|YP_001136145.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145217953|gb|ABP47357.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 154

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 58/171 (33%), Gaps = 31/171 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++   P++  N G   R +       L LV P     SE     +      + SV V ++
Sbjct: 4   VLFYSPRIAPNTGNAIRMVAGTGCA-LHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHAD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------IIFGRERW 130
           L  A                   SVL P            S   VG      ++FG E  
Sbjct: 63  LGAA------------------WSVLMPARVFAFTAHAATSFAGVGYEPGDVLMFGPEPT 104

Query: 131 GLTNEEIALSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           GL  +E  L++  I+     P+     SLN+S A  + V+E       +  
Sbjct: 105 GL--DEATLADPHITGQVRIPMLSGRRSLNLSNAAAVAVYEAWRQHGFAGA 153


>gi|313673216|ref|YP_004051327.1| tRNA/rRNA methyltransferase (spou) [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939972|gb|ADR19164.1| tRNA/rRNA methyltransferase (SpoU) [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 156

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           + L +P++ +N G +AR     ++ +L L+       S+K    +       + V +   
Sbjct: 5   VALFEPEIPQNTGNIARLCAGTDV-ELILIGKLGFSLSDKYLKRA--GLDYWEYVTLHKV 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L++  +             N ++     K       E   S   + I FG E  GL  
Sbjct: 62  DTLEQFFSQF---------PDNIYEYAFLSKFGEKYYTEIPLSDNIITI-FGNESSGLP- 110

Query: 135 EEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E+      + +   P+N    S N+S +V +++++ +  
Sbjct: 111 -EMIRDRFMDRLYRIPMNDKIRSQNLSNSVAIVLYDILRR 149


>gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 252

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 23/154 (14%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSVRV 73
           V      N G V R         + L        + K   +SA +   I      D+  V
Sbjct: 104 VGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAADV 163

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + LK+A                    VLA      V  + +        +FG E  GL 
Sbjct: 164 VTQLKDA-----------------GLQVLATVLGGSVSLDEVDLSGPTAWLFGPEAHGLP 206

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            E  AL+ A +  P+     SLN++ A  + +++
Sbjct: 207 AEVAALATAGVEIPMTGGAESLNVASAAAICLYQ 240


>gi|119025947|ref|YP_909792.1| rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765531|dbj|BAF39710.1| possible rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
          Length = 290

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 18/160 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-----RVFSNLKE 79
             N G V R+        + LV+      + K   S+A +   +  V       F    E
Sbjct: 140 PGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMGTDEYFDWCAE 199

Query: 80  ---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+     +Y T AR       VLA  ++               ++FG E  GLT + 
Sbjct: 200 RGLAVYAAD-VYGTDARPPEPLTDVLAVPQSLAQAK---------TVLFGNEARGLTQDV 249

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   + I+S P+     SLN+  +  +M+     +S V  
Sbjct: 250 LERVDRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVER 289


>gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
 gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
          Length = 363

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++S  G ++ L       N+G V R+   F    + +   R    +  A  +SA A   +
Sbjct: 207 RSSPPGLLVALDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARL 266

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              R  +    L    A   F+    A             ++ + ++E   +   + ++ 
Sbjct: 267 PVARATNLARTLVSYAAGGQFVVGLAA-------------DSEVSIDELTMATDPLVLVI 313

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL+       +  +  P+     SLN   A  + + E     
Sbjct: 314 GSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAAGITLAEIARRR 360


>gi|51892235|ref|YP_074926.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51855924|dbj|BAD40082.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 273

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 13/180 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P +  L +   G V++L   Q   N+G   R++         +    D + + K    + 
Sbjct: 107 PLSRTLDDLGPGLVLVLDGLQDPGNLGTAIRSLEAMGGGGAVVAGGVDPY-NPKVVRGAM 165

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +  V+    + +A+A L          R   + +   +    +    +   +   
Sbjct: 166 GSLFRLPVVKRP--IGDALAGL----------RAAGRRIYLAEAGGALAPWAVDLARGAA 213

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++ G E  G + E  AL++ ++S P+     SLN   A  L+ +E M     ++   +  
Sbjct: 214 VVVGSEAAGPSPEARALADGVVSIPMAGPTESLNAGVAASLLAYEAMRQQGAAAPPALSH 273


>gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 250

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +E+
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETRRQRVLKNEE 249


>gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 94  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 151

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 152 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------ST 197

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 198 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254


>gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
 gi|167705415|gb|EDS19994.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
          Length = 238

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 21/148 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R    F++ Q+ L N      ++K   S   A+  +    ++ NL + I+
Sbjct: 105 QDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHL--SCIYGNLTQLIS 162

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      +  +   N  N                +I     +  + G E  G+  E +A
Sbjct: 163 QLQEKGVVVIGSALENGKN--------------IAQINRYSKMAFVVGNEGNGMNPEVLA 208

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
             + I   P+N    SLN++ A  +M++
Sbjct: 209 KCDDIGYIPIN-TIESLNVAIAGGIMMY 235


>gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL1A]
          Length = 442

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 17/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
            +N+G + R+        L L   R    +      +A A   +   RV +   +L++  
Sbjct: 281 PQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLK 340

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            + + +                 +E +  L+E  F G  V ++ G E  G++     L +
Sbjct: 341 DEGYTVVGLA-------------EEGSSTLSEIKFQGPLV-VVVGSEDKGISLITRRLCD 386

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            ++  P+  +  SLN S A  + ++E   +  + S          
Sbjct: 387 QLVRIPLKGVTTSLNASVATSIFLYEVARSKWMRSISGQDPSPRL 431


>gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A]
 gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL2A]
          Length = 416

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 17/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
            +N+G + R+        L L   R    +      +A A   +   RV +   +L++  
Sbjct: 255 PQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLK 314

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            + + +                 +E +  L+E  F G  V ++ G E  G++     L +
Sbjct: 315 DEGYTVVGLA-------------EEGSSTLSEIKFQGPLV-VVVGSEDKGISLITRRLCD 360

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            ++  P+  +  SLN S A  + ++E   +  + S          
Sbjct: 361 QLVRIPLKGVTTSLNASVATSIFLYEVARSKWMRSISGQDPSPRL 405


>gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
 gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
          Length = 243

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 13/170 (7%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
              A  L+N   GP+++L      +NIG + R    F+  +  +   R   P     + +
Sbjct: 84  PSLAEILENGETGPLLVLDQITDPQNIGALFRLAAAFS-AKAVIAQDRRTPPLGGPLAKA 142

Query: 62  A-NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A  A   +  + V  N+  A+  +          R     +        +        + 
Sbjct: 143 ATGAVECVPFIPVV-NISRALEAI----------REKHIPIFGLAGEGALSLRDTAPTRT 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             ++ G E  GL     A+ + +++ P++P   SLN++ A  + ++    
Sbjct: 192 CALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYHLGR 241


>gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           O157:H7 str. EC1212]
 gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli LT-68]
 gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1357]
 gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           O157:H7 str. 1125]
 gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 155-74]
 gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2747-71]
 gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-218]
 gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-304]
 gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-227]
          Length = 240

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 83  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 142

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 143 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 189

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 190 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239


>gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 259

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAIA-- 82
           N+G +AR      +    ++ P+ G    +  A  +SA A   I   R   NL +     
Sbjct: 121 NLGAIARTAECSGVH--AIIVPKKGSAEINPDAIKTSAGALYKIPVCR-HDNLGKVGKFL 177

Query: 83  ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
               +  + +T               E        +       II G E  G++++ I +
Sbjct: 178 IDSGIQLVVST---------------EKTEESIYSVDYTAPTCIIMGAEDIGVSDDLIRI 222

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           S+ +   P+     SLN+S +  ++++E +    ++ 
Sbjct: 223 SDHLAKIPMFGEIGSLNVSVSAGVVLYEAIRQRQITK 259


>gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 250

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------ST 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249


>gi|33240425|ref|NP_875367.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237952|gb|AAQ00020.1| Predicted rRNA methylase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 166

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 21/163 (12%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I L +P++ +N G + R    F+   L L+ P     + K    +         +
Sbjct: 6   INKLSIALYEPRIPQNTGNIGRTCLAFDF-DLHLILPLGFEINNKRLKRA--GLDYWKYI 62

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L E+ A             N  + +   KE  I L++  F   +  ++FGRE  G
Sbjct: 63  NL--ELHESFAHYSKFI-------NPSRIIGFSKEGGIPLSKIEFQSND-SLLFGREDLG 112

Query: 132 LTNEEIALSNAIISFPV--------NPLFPSLNISQAVLLMVW 166
           L +      + + + P+        +    SLN+S A  +  +
Sbjct: 113 LPSHVKNKCDFMATIPMPGKSNSKNDNGVRSLNLSVACGIASF 155


>gi|238759850|ref|ZP_04621006.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701911|gb|EEP94472.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 230

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  + R      + Q+        WP+ +  +   SA        V+  +++  AIA
Sbjct: 30  PHNVSAIIRTADAVGIHQVH-----AIWPTTQMYTRLSSAAGSNSWVQVKTHTHIAGAIA 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        ++++         + A+   E I   +   I+ G+E+ G++ E +AL++ 
Sbjct: 85  HL--------KSQDMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGISEEALALADQ 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
            I  P+  +  SLN+S A  L+++E       ++    + Q+  +   +     +
Sbjct: 136 DIIIPMIGMVQSLNVSVASALILYEAQRQR-QNAGMYQRTQSVLSENEQQRLLFE 189


>gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp]
          Length = 250

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 21/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R        Q  +V P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAG-AQAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               EA   L +   +G  V ++ G E  G+
Sbjct: 159 LARTLEKLQKKGLWVVGTAG-------------EAEQELYQLDMTGPTV-LVMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + ++  P+     SLN+S A  + ++E +       
Sbjct: 205 RRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQRQAKG 248


>gi|301168147|emb|CBW27735.1| putative rRNA methylase [Bacteriovorax marinus SJ]
          Length = 164

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 29/152 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R     NL +L L++P     SEKA   +       DS+++   
Sbjct: 15  IVLNAPEIPGNTGSIGRTCAALNL-ELILIHPLGFDISEKAVRRA--GLDYWDSIKISEY 71

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------GQNVGIIFGRE 128
                           R+ ++F     PKE  +    +            +   +IFG E
Sbjct: 72  ----------------RDFDHFLESEKPKEEELFFFTKSAEETIFETTITEGSYLIFGSE 115

Query: 129 RWGLTNEEIAL-SNAIISFPV-NPLFPSLNIS 158
             GL  + +A  SN  + FP+ N    SLN++
Sbjct: 116 SVGLPKDLLAKFSNRQVCFPILNKEIRSLNLA 147


>gi|269965888|ref|ZP_06179981.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
 gi|269829441|gb|EEZ83682.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 236

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP +      +SA A   ++ V    +++ AI 
Sbjct: 39  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGARNWVE-VDTHDSIETAIT 92

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G + +   L++ 
Sbjct: 93  EL---------KAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLADQ 143

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +E   P
Sbjct: 144 DIIIPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 187


>gi|332880032|ref|ZP_08447716.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682028|gb|EGJ54941.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 217

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 12/140 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R    F + Q   +  R G   +   +    A   +D V  + N +  I    
Sbjct: 40  HNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAM--GAQKWVD-VFRYDNTQHCID--- 93

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                + R +        P + A  LN+   S +     FG E+ GL+ + ++ ++  + 
Sbjct: 94  -----SLRAKGYQIVATTPHKDAYFLNDFDIS-KKSAFFFGTEKEGLSEQVLSQADTFLK 147

Query: 146 FPVNPLFPSLNISQAVLLMV 165
            P+     SLNIS AV +++
Sbjct: 148 IPMVGFTESLNISVAVAIVL 167


>gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 296

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 7/155 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   +   N G V R         + L +      + K   +S  +   +  V     +
Sbjct: 144 VLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPVVTGVP-V 202

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +EA+A L               +  A  +      +R   G     +FG E WGL  E  
Sbjct: 203 EEAVAGLR------GIGVRVLAADGAGADDLDDELDRGTMGGPSAWVFGNEAWGLPEETR 256

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           AL++A++  P++    SLN++ A  + ++      
Sbjct: 257 ALADAVVRVPLHGKAESLNLATAAAVCLYASARAQ 291


>gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 250

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYHCNLPD--------------ST 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249


>gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha153]
          Length = 250

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +    + P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCVLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
           str. Ikeda]
          Length = 266

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 11/150 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R+   FN++ + L        +      +  A   I+ V+V  NL      +++
Sbjct: 128 NLGAIIRSAAAFNISTIILPENNSIEENGTIAKIAVGALEKINLVKV-KNL---YNTINY 183

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           +       +  F  +      +  L E+ F    +  + G E  GL N      + +I  
Sbjct: 184 L------KKYGFWIIGLDLNNSNQLTEQTFH-SKMAFVLGSENKGLRNLTRQQCDFLIKI 236

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           P++    SLN++ A  ++ +E  + SI   
Sbjct: 237 PMSHKTESLNVAGAATIIFYESFKFSIKQQ 266


>gi|15827131|ref|NP_301394.1| tRNA/rRNA methyltransferase [Mycobacterium leprae TN]
 gi|221229609|ref|YP_002503025.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13092679|emb|CAC29927.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae]
 gi|219932716|emb|CAR70512.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 158

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 23/156 (14%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P++  N G   R         L LV P     S      +      + SV V ++L EA 
Sbjct: 13  PRIPPNTGNAIRTAAVTGCA-LHLVEPIGFDLSNPKLRRAGLDYHDLASVTVHTSLSEAW 71

Query: 82  ADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             L    ++A +                A  L   +       ++FG E  GL  +   L
Sbjct: 72  NALSPARVFAFST--------------LANTLFTDVSYQAGDVLMFGPEPTGL--DAATL 115

Query: 140 SNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  I+     P+     SLN+S A  + V+E    
Sbjct: 116 ADDHITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 151


>gi|163755356|ref|ZP_02162476.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
 gi|161324776|gb|EDP96105.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
          Length = 218

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F +  + ++  R G   ++  +    A   +D +  +++ ++ I    
Sbjct: 43  HNTSAVLRSCDVFGIQDVHVIEARLGKKMDREIAM--GAQKWVD-IHRYNDTQQCID--- 96

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T + +        P E +  L++   + Q     FG+E+ GL+ E ++ ++  + 
Sbjct: 97  -----TLKKQGYRIIATTPHEDSQYLHDFDIT-QKAAFFFGKEKEGLSEEVLSQADEFLK 150

Query: 146 FPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTPA 187
            P+     SLNIS +  + + E   +           E+   A
Sbjct: 151 IPMVGFTESLNISVSAAITIQEVTTKLRNSDIPWQFTEEEVLA 193


>gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           W619]
          Length = 248

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 21/173 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66
           +      +++L       N+G   R       T   +V P+D     +   R  +  A  
Sbjct: 92  RTETPPLILVLDGVTDPHNLGACLRTADAAGAT--AVVVPKDKSATLTPVVRKVACGAAE 149

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           VI  V V +    L++      ++  T               EA   + ++  +G  V +
Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-M 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I G E  G+        + ++  P++    SLN+S A  + ++E +       
Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQRQAKR 248


>gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
 gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
          Length = 361

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++      ++ +        L +  
Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFR 282

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + I +T++ N         PK               + ++ G+ER GL++  I+ S+
Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLVLGQERDGLSDAAISSSD 328

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++        SLN+S A  +++ E    
Sbjct: 329 LSVAIDGTGNVESLNVSVATGVLLAEWWRQ 358


>gi|271968868|ref|YP_003343064.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
           43021]
 gi|270512043|gb|ACZ90321.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
           43021]
          Length = 292

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---FSNLKEAI 81
            N+G + R      +  + L +PR   P   ++   S  A   I   R+   +  L+E  
Sbjct: 142 GNVGAIFRCAAALGVDGIIL-SPRCADPLYRRSVKVSMGAVFAIPYARMGNWYDGLEE-- 198

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                      R        L P + A  + + +   + V ++ G E  GL++  +  ++
Sbjct: 199 ----------IRAAGFQTLALTPDQDATPM-DTVEMRERVALLLGSEGDGLSSRWLREAD 247

Query: 142 AIISFPVNPLFP-----SLNISQAVLLMVWECMENSIVSSEKNVK 181
             +  P++P        SLN+  A  +     M  + V   +   
Sbjct: 248 EQVCIPMSPTAMASGVDSLNVVAAAAIACHGLMRGTAVPQGRRQP 292


>gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549]
          Length = 248

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73
           ++IL + Q   N G   R+  +  +  + +  P+D     +   +  +  A      + V
Sbjct: 99  ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155

Query: 74  FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL  AI  L     +I        ++  S+                  +V I+ G E 
Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+     A  + +   P+     SLN+S A  + ++E +   
Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244


>gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida
           U112]
 gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
           subsp. novicida FTE]
 gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112]
 gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
           subsp. novicida FTE]
          Length = 248

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73
           ++IL + Q   N G   R+  +  +  + +  P+D     +   +  +  A      + V
Sbjct: 99  ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155

Query: 74  FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL  AI  L     +I        ++  S+                  +V I+ G E 
Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+     A  + +   P+     SLN+S A  + ++E +   
Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244


>gi|156743085|ref|YP_001433214.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
           13941]
 gi|156234413|gb|ABU59196.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
           13941]
          Length = 496

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 19/167 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK----EA 80
            EN+GM  R      +  + +          +   ++  A   I  +   ++L     +A
Sbjct: 345 PENLGMTLRTADAAGVEAVIVAGSGADPFHRECVRAARGAVGRIP-IYTCADLPTWVGQA 403

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            A    +   T    N  +++        ++           II G E  GLT+  +A+ 
Sbjct: 404 RARGIHVVGATG---NVERTLYDADLPLPLM-----------IIVGNETEGLTDATLAVC 449

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           ++++  P+ P   SLN+  A  +++++ +   +        +  T A
Sbjct: 450 SSLVRIPMAPGQDSLNVGVAAGVILYDIVRRRLCDRHLAPTKNPTTA 496


>gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           phytofirmans PsJN]
 gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           phytofirmans PsJN]
          Length = 247

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   G  +ILV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     ++  T        KS+   +             
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWVVGTAG---EATKSLYDTELDGP--------- 191

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++  P+     SLN+S A  + ++E +    V  
Sbjct: 192 --VALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSVKK 247


>gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
           str. 301]
 gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           CFT073]
 gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei
           Ss046]
 gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UTI89]
 gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC
           O1]
 gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           E24377A]
 gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS]
 gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC869]
 gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC508]
 gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC
           8739]
 gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           SMS-3-5]
 gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           53638]
 gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
 gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
 gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E110019]
 gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
 gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
           1012]
 gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           101-1]
 gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4115]
 gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
           fergusonii ATCC 35469]
 gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           IAI1]
 gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           ED1a]
 gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           55989]
 gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           IAI39]
 gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UMN026]
 gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           83972]
 gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
 gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
 gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B
           str. REL606]
 gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9]
 gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp.
           4_1_40B]
 gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1412]
 gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354]
 gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088]
 gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           107-1]
 gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           119-7]
 gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           198-1]
 gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           84-1]
 gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           115-1]
 gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           182-1]
 gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           187-1]
 gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           21-1]
 gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           116-1]
 gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           175-1]
 gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           45-1]
 gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           200-1]
 gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           69-1]
 gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           196-1]
 gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           185-1]
 gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           124-1]
 gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           78-1]
 gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           146-1]
 gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           NC101]
 gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           H736]
 gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
 gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           145-7]
 gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
 gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
 gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA206]
 gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA143]
 gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA271]
 gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA280]
 gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
 gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
 gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
 gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli
           CFT073]
 gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T]
 gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
           UTI89]
 gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
           536]
 gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS]
 gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E24377A]
 gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC
           8739]
 gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           SMS-3-5]
 gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           53638]
 gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC869]
 gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC508]
 gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
 gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
 gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E110019]
 gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
 gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
           1012]
 gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           101-1]
 gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989]
 gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1]
 gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88]
 gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39]
 gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a]
 gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026]
 gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82]
 gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
 gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           83972]
 gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
 gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of
           23S rRNA 2'-O-ribose G2251 methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)]
 gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1]
 gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella
           flexneri 2002017]
 gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042]
 gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088]
 gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1412]
 gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354]
 gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           IHE3034]
 gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           196-1]
 gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           185-1]
 gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           200-1]
 gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           175-1]
 gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           198-1]
 gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           69-1]
 gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           84-1]
 gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           45-1]
 gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           115-1]
 gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           182-1]
 gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           116-1]
 gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           21-1]
 gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           187-1]
 gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           119-7]
 gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           107-1]
 gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           124-1]
 gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           78-1]
 gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           146-1]
 gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           NC101]
 gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
 gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972]
 gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UM146]
 gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           145-7]
 gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W]
 gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli
           DH1]
 gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           85-1]
 gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           110-3]
 gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           153-1]
 gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           16-3]
 gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC
           9905]
 gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           WV_060327]
 gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           EC4100B]
 gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H- str. H 2687]
 gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli EPECa14]
 gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli E128010]
 gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella sonnei 53G]
 gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli RN587/1]
 gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11]
 gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482]
 gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120]
 gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252]
 gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263]
 gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489]
 gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863]
 gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007]
 gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           57-2]
 gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           60-1]
 gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           117-3]
 gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167]
 gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. 1044]
 gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli STEC_7v]
 gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
 gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
 gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA206]
 gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA143]
 gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA271]
 gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA280]
 gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
 gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
 gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 5216-82]
 gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
 gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-671]
 gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 4343-70]
 gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71]
 gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri VA-6]
 gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-272]
          Length = 243

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
           novicida Fx1]
          Length = 248

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73
           ++IL + Q   N G   R+  +  +  + +  P+D     +   +  +  A      + V
Sbjct: 99  ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155

Query: 74  FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL  AI  L     +I        ++  S+                  +V I+ G E 
Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEADDSLYSMNLAD--------------SVAIVAGAEG 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+     A  + +   P+     SLN+S A  + ++E +   
Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244


>gi|315127927|ref|YP_004069930.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315016441|gb|ADT69779.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 228

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIA 82
            N+  + R         +  V     WP ++   +   S  +   +D   +  N+ +A  
Sbjct: 31  HNLSAIVRTADAVGCHHVHAV-----WPEKQKWLTNNTSGGSKNWLD-THLHKNIDDA-- 82

Query: 83  DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 A + R  N    +LA    E A+   E I   +   II G+E+ G++ + +  +
Sbjct: 83  ------AASIRAHNPDVQILATHLSEDAVDFRE-IDYTKPTAIIVGQEKTGISEKALEYA 135

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  I  P+  +  SLN+S A  L+++E      ++ 
Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQRQRELAG 171


>gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae]
          Length = 255

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 17/181 (9%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +  +G  +ILV        N+G   R         L ++ P+D     +   +  + 
Sbjct: 88  ELLDRTEGAPLILVLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPTVQKVAC 145

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  VI  V V +NL   +  L          +     V    EA   L ++  +G  + 
Sbjct: 146 GAAEVIPLVAV-TNLAATLKKLQ---------QRGLWIVGTAGEAEQELYDQDMTGPTI- 194

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +I G E  G+        + ++  P+     SLN+S A  + ++E +    V ++ + K+
Sbjct: 195 LIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAKTSSKK 254

Query: 183 Q 183
           +
Sbjct: 255 K 255


>gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 307

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 9/166 (5%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +      P + L   +   N+G + R+        + L++      S +A  +S  A  
Sbjct: 150 AVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRASMGA-- 207

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            I +V +            F+  T      N + +     A++   +  +SG  + I+ G
Sbjct: 208 -IFNVEIVQ-----CNQSDFVAFTQQWTNQNGQIIGTALPASVDYRDADYSGALM-ILMG 260

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E+ GL    + L   +I  P+     SLN++ A  + ++E + N 
Sbjct: 261 NEQAGLPPSLMQLCTQLIRLPMLGRSDSLNLAVATGVTLYEVLRNR 306


>gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           SE11]
 gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11]
          Length = 243

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|302378509|gb|ADL32340.1| WenM [Proteus vulgaris]
          Length = 167

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 15/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71
           I+L +P++  N G + R   N     L L+ P  G+  +  R   A  D      +    
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             ++ L+     L+   A +      F   L  K      N     G    ++FG E  G
Sbjct: 62  DYYAFLES--EGLNPDNAQSPTGARVF--ALTTKGTPAHSNVSYQDGDY--LLFGPETRG 115

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +        I  P+     S+N+S  V ++V+E    
Sbjct: 116 LPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157


>gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 248

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 23/178 (12%)

Query: 6   PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61
            ++    + P +ILV        N+G   R       T   +V P+D     +   R  +
Sbjct: 87  EEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVA 144

Query: 62  ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A  VI  V V +    L++      ++  T               EA   + ++  +G
Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTG 191

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V +I G E  G+        + ++  P++    SLN+S A  + ++E +       
Sbjct: 192 PLV-MIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQRQAKR 248


>gi|163756791|ref|ZP_02163900.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
 gi|161323180|gb|EDP94520.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
          Length = 268

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 30/165 (18%)

Query: 18  ILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ILV   P+   NIG + R     N+  + + NP+    +     SS           VF+
Sbjct: 121 ILVAEAPEKPGNIGALLRTADAANIDAVFIANPKTDLYNPNIVRSSVG--------CVFT 172

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------GQNVGIIFGR 127
                         +TA       S L  K+ AI       S         +   I+ G 
Sbjct: 173 T--------QIAMGSTA----EIISFLQEKDIAIYCAALTASEHYHLQNYQKATAIVVGT 220

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL++E +  S   I  P+     S+N+S A  ++++E     
Sbjct: 221 EATGLSDEWLNNSTQNIIIPMQGKIDSMNVSVAAAIVIFEAKRQR 265


>gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. G5101]
          Length = 243

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
           15-3]
          Length = 282

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 33/169 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65
           I L   +   N+G + R      +  + L+       S +   ++  +            
Sbjct: 128 IALDRVRDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPETVRATMGSIFSIPLYRCNES 187

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++    F            I  T          +  P +         F    + ++ 
Sbjct: 188 TFLNWSTHFR---------GMIVGT---------HLKGPVDY----RTIDFKNGPIILLM 225

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           G E+ GL++  +   N +   P      SLN++ A  +M++E   + + 
Sbjct: 226 GNEQQGLSDVLVNHCNNLARIPQCGHADSLNLAVATAIMLYEIRRSYLT 274


>gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1001]
          Length = 247

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 25/178 (14%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L +   G  +ILV        N+G   R           ++ PRD     +  A   ++
Sbjct: 87  ELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNATAAKVAS 144

Query: 63  NADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  + V +NL  A+ +L     +I  T                 A          
Sbjct: 145 GAADTVPYITV-TNLARALRELKDAGVWIVGTAG--------------EATKSLYETELD 189

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V I+ G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 190 GPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRSAKK 247


>gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP6-BS73]
 gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1087-00]
 gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP6-BS73]
 gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1087-00]
 gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA04375]
 gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41301]
          Length = 242

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae
           R6]
 gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
 gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family
           [Streptococcus pneumoniae R6]
 gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
          Length = 253

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 99  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 158

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 159 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 203

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 204 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253


>gi|300774602|ref|ZP_07084465.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300506417|gb|EFK37552.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 176

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             VIIL + +   N+G   R    F + ++ L       P  +   ++  A   +D    
Sbjct: 25  PLVIILDNIRSMHNVGAAFRTADAFLIEKIILCGITPQPPHREIHKAALGATESVDWSHE 84

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                 A+ADL         N      +    ++ ++ +  I   +   +I G E  G++
Sbjct: 85  ADT-NTAVADLK-------SNGYEIIGIEQTTDSQMITDFTIDKSKKYALILGNEVEGIS 136

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +E +   +  +  P      SLN+S    +++WE  + 
Sbjct: 137 DEVLPNIDVFLEIPQLGTKHSLNVSVCGGIVMWEFAKA 174


>gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 282

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 11/151 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       N+G + R+   F    L          S     S++ A   ID + V  
Sbjct: 134 VLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASGALEHIDQIEV-K 192

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL EA+  LH      A  R       AP E      E+ F+G+ + ++ G E  GL  +
Sbjct: 193 NLAEALGQLHE-----AGFRTMGLDSDAPAE-----LEKSFAGEKIALVLGAEGKGLRQK 242

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                  +    +     SLN+S A  + ++
Sbjct: 243 TRETVTTLARLDMPGAIHSLNVSNAAAISLY 273


>gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
 gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
          Length = 361

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++      ++ +        L +  
Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFR 282

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + I +T++ N         PK               + ++ G+ER GL++  I+ S+
Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLVLGQERDGLSDAAISSSD 328

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++        SLN+S A  +++ E    
Sbjct: 329 LSVAIDGTGNVESLNVSVATGVLLAEWWRQ 358


>gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           D39]
 gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
 gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1873-00]
 gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae SP195]
 gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae MLV-016]
 gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
 gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           D39]
 gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
 gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1873-00]
 gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae SP195]
 gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae MLV-016]
 gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17570]
 gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41317]
 gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47368]
          Length = 242

 Score = 60.5 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 266

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N+G + R+     +  + +   R    +     +S  A   I  VRV +NL
Sbjct: 120 ILDGIEDPHNLGSIIRSADALGVHGIIIPKRRAASLTGIVAKTSTGALEHIPVVRV-TNL 178

Query: 78  KEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + +  L     +I+AT               + A        S   + +I G E  G++
Sbjct: 179 GQVVDQLKTKGVWIFAT---------------DMAGQDIRSWNSQGPIAVIIGNEGQGVS 223

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            + +  ++  I+ P+     SLN S A  ++++E     I
Sbjct: 224 KKLLDHADQTITIPMVGHVQSLNASVAASIIMYEVASKRI 263


>gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
           29256]
 gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
           29256]
          Length = 249

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249


>gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
 gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 238

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 21/148 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R    F++ Q+ L N      ++K   S   A+  +    ++ NL + I+
Sbjct: 105 QDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHL--SCIYGNLTQLIS 162

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      +  +   N  N                +I     +  + G E  G+  E +A
Sbjct: 163 QLQEKGVVVIGSALENGKN--------------IAQINRYSKMAFVVGNEGNGMNPEVLA 208

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
             + I   P+N    SLN++ A  +M++
Sbjct: 209 KCDDIGYIPIN-TIESLNVAIAGSIMMY 235


>gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 289

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 27/192 (14%)

Query: 7   QLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            L ++   P   V +L   +   N G V R         +   +      + K   +SA 
Sbjct: 107 SLADALSPPPTLVTVLAHVRDPGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAG 166

Query: 64  A---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ- 119
           +     V+   R F  L  A+ +                  LA   A     +    G  
Sbjct: 167 SLFHVPVVAGTR-FETLIGALRECGLTV-------------LAADGAGEHTLDAALDGGL 212

Query: 120 ---NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  +FG E WGL  E +   + ++  P+     SLN++ A  + ++    ++    
Sbjct: 213 LDRPTAWVFGNEAWGLPEEILRAVDHVVRVPIYGRAESLNLATAAAVCLY---ASARAQR 269

Query: 177 EKNVKEQNTPAT 188
                    PA 
Sbjct: 270 AGRAVPGAAPAD 281


>gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
           polysaccharea ATCC 43768]
 gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
           polysaccharea ATCC 43768]
          Length = 194

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 33  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 90

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 91  AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPD--------------SA 136

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 137 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 193


>gi|257463319|ref|ZP_05627716.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060896|ref|ZP_07925381.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313686572|gb|EFS23407.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 224

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 21/155 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71
           I+L D Q   N+G + R +     + + L        +EK   SS  +       V++  
Sbjct: 76  IVLDDIQDPGNLGTMIRLVDAAGFSDIFLTKHSVDCYNEKVVRSSMGSIFHVRLHVMEKK 135

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L+                  N+  ++   +   V    +   +    +FG E  G
Sbjct: 136 EILEYLQT----------------ENYHVLVTTLQRDSVAYTEMQLKEKNAFVFGNEGHG 179

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ E + L+   I  P++    SLN++ A  ++++
Sbjct: 180 VSKEFLELAEQKIIIPISGQAESLNVAMAAGIILF 214


>gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 249

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 23/179 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62
           +L +  +GP ++LV        N+G   R           ++ P+D      A  +  ++
Sbjct: 87  ELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINATVAKVAS 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E      ++  T               EA   L +  F G 
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA-------------DEAEQDLYQADFKGA 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            + ++ G E  G+        + ++S P+     SLN+S A  + ++E +        K
Sbjct: 192 -IALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAK 249


>gi|13472801|ref|NP_104368.1| rRNA methylase [Mesorhizobium loti MAFF303099]
 gi|14023548|dbj|BAB50154.1| rRNA methylase [Mesorhizobium loti MAFF303099]
          Length = 274

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G V R +       + LV       S +   ++  +   +   +  + 
Sbjct: 120 VALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAK--AT 177

Query: 77  LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  +A        +  T  +   +++SV   +               V ++ G E+ GL
Sbjct: 178 TEAFLAWRGGFSGLVAGTHLKGAVDYRSVDFSR-------------GPVLLMMGNEQQGL 224

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                A  + ++  P      SLN++ A  +M++E    ++
Sbjct: 225 PESLAASCDRLLRIPQAGRADSLNLAVATGIMLFEIRRGAL 265


>gi|268611052|ref|ZP_06144779.1| hypothetical protein RflaF_16350 [Ruminococcus flavefaciens FD-1]
          Length = 269

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 15/149 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG V R+          L+ P    P   ++   S      +    + +   + I +L 
Sbjct: 131 NIGAVFRSAAALGF-DAVLLTPSSSDPLFRRSVRVSMGTVFQLPWTYLENGSPDYIGELR 189

Query: 86  ---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F+ A  A  R+  K +  P+         + S   + ++ G E  GL +E I   + 
Sbjct: 190 NAGFVTAAMALRRDTIK-INDPR---------LASVDRLAVLLGTEGEGLKDETIDSCDY 239

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            I  P++    SLN++ A  +  W+  ++
Sbjct: 240 TIKIPMSHGVDSLNVAAASAVAFWQLGKH 268


>gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
          Length = 260

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 54/167 (32%), Gaps = 15/167 (8%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A   V++L+  +   N+G + RA        L LV       S +   +S  A   +   
Sbjct: 107 AAPLVLVLLGLEKPGNLGAILRAADGAG-ADLVLVAEGVDLFSPQVIRNSTGAVFALPVY 165

Query: 72  RVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            V    +EA           AR        ++A       L         V  + G E  
Sbjct: 166 PVAE--EEA-----------ARFLEEQNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDK 212

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           GL       +   +  P+     SLN++    L+++E +      + 
Sbjct: 213 GLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGGAP 259


>gi|85711929|ref|ZP_01042984.1| rRNA methylase SpoU [Idiomarina baltica OS145]
 gi|85694326|gb|EAQ32269.1| rRNA methylase SpoU [Idiomarina baltica OS145]
          Length = 230

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 18/154 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR---SSSANADCVIDSVRVFSNLKEAIA 82
            N+  V R      + ++        W S K R    ++  +   + +V   S L  A+ 
Sbjct: 31  HNLSAVVRTADAVGVHEMH-----AIWLSSKMRVSGGTALGSQNWV-NVHHHSQLSPAVE 84

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +        + +     V    + A+   E I   Q   I+ G+E+ G T E + +++ 
Sbjct: 85  QI--------KQQGMQVVVTHLSDQAVDFRE-IDYTQPTAILLGQEKHGATEEALKIADH 135

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +  P+  +  SLN+S A  +M++E       + 
Sbjct: 136 HVKIPMVGMVQSLNVSVAGAVMLYEAQRQREQAG 169


>gi|107028816|ref|YP_625911.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU
           1054]
 gi|116690025|ref|YP_835648.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia
           HI2424]
 gi|105897980|gb|ABF80938.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU
           1054]
 gi|116648114|gb|ABK08755.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia
           HI2424]
          Length = 260

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P L        ++L   Q   N+G + R+     +       P   +  S K   S 
Sbjct: 103 PAHP-LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSG 160

Query: 62  ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A  ++    +  +++ EA+A+                 V                   
Sbjct: 161 MGAHFLLS---IHEDVEAEALAE------------RLDVPVALTDSHGAQAVYDCDLSGP 205

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V  +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 206 VAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus
           nasoniae]
          Length = 244

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 22/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R+     +    +V P+D     +  A+  +  A   +  +RV +
Sbjct: 99  ILDGITDPHNLGACLRSAEAAGI-DAVIV-PKDKSAQLNATAKKVACGAAESVPLIRVTN 156

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++ +    +I  T               EA   L E   +G  + ++ G E  G+
Sbjct: 157 LARTLRQ-LQQHIWIVGTAG-------------EANHTLYESKLTGA-IALVMGAEGEGM 201

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + +IS P+  +  SLN+S A  + ++E +   
Sbjct: 202 RRLTREHCDELISIPMAGVVSSLNVSVATGVCLFEAVRQR 241


>gi|281358057|ref|ZP_06244541.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281315430|gb|EFA99459.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 182

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   I+L   +   N G + R        ++         P  K   ++  AD ++   R
Sbjct: 26  KQLCIVLDRLRSAHNTGNIFRIAEAVGAAEIIACGYTPAPPHPKLEKTAMGADKMVP-CR 84

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  +   A+         T R       + A           +     + I+FG E  G+
Sbjct: 85  VMPDSATAVR--------TLREEGYRMILAAECMPGSRFAWEMKYEFPLAIVFGNEALGV 136

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             E + L + ++S P+     S+N+  +   +++
Sbjct: 137 APETLELVDGLVSLPMFGEKSSINVGNSAAAILY 170


>gi|148241713|ref|YP_001226870.1| rRNA methylase [Synechococcus sp. RCC307]
 gi|147850023|emb|CAK27517.1| rRNA methylase [Synechococcus sp. RCC307]
          Length = 279

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 14/177 (7%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           AP    +    ++ L   Q   N+G + R      + ++ L    D W  +  R+S+  A
Sbjct: 111 APSWPQAKSPLLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQPKVLRASAGAA 170

Query: 65  DCVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             +  S++   +L   +A       A  A  R+  +    P              Q   +
Sbjct: 171 LEL--SMQRLDDLAPVLAMARERGVACYAALRDGGQPYWQPD-----------WHQPSLL 217

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + G E  GL    +      ++ P +    SLN++ A  +++ E +       E   
Sbjct: 218 LLGNEGSGLDPALVQQGVTALTIPHHAAVESLNVAVAAGVLLLERVRQGHDRRESAA 274


>gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
           RED65]
 gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
           RED65]
          Length = 246

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 10  NSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           +S   P  +LV        N+G   R      +    ++ P+D      A     +  A 
Sbjct: 90  DSLDEPAFLLVLDSVTDPHNLGACLRTADAAGVHG--VIAPKDKAVGLTATVSKVACGAA 147

Query: 66  C------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                  V +  R    L+E    + ++Y T                 A     +     
Sbjct: 148 ESVPFYQVTNLARTMKELQE--RGI-WLYGTAG--------------EASESVFKTDLKG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            + I+ G E  GL        + +I+ P+     SLN+S A  + ++E +     S
Sbjct: 191 PIAIVMGAEGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLFEAVRQRQSS 246


>gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
 gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
          Length = 229

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 67/177 (37%), Gaps = 21/177 (11%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVR 72
           +LV+  +   N+  + R+     + +   V+    PR         S++  +   +  +R
Sbjct: 24  VLVEHVEKPHNLSAILRSCDAVGVLEAHAVSFSGRPRTF------NSTAQGSQRWVP-LR 76

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             + +  A+  L        ++R            A    +  F+G     + G E+WGL
Sbjct: 77  DHATIASAVHHL--------KDRGFKLYGTNLGVDARDYRDCDFTG-PCAFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           T E   L +  +  P+  +  SLN+S A   +++E +     +       +  PA +
Sbjct: 128 TEEATGLMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAAGVAPHNGEGIPAEQ 184


>gi|94499900|ref|ZP_01306436.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
 gi|94428101|gb|EAT13075.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
          Length = 229

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 12/148 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R+   F + +L +V P D +  +  R  +  +   + +V+   ++ +AI   
Sbjct: 30  PHNLSAIIRSCDAFAVNELNVVWPYDDY--QTFRGRAMGSQQYV-NVKTHKDVSQAIQGF 86

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   + +          + A+   + I   +   I+ G E+ G++ + + L +  I
Sbjct: 87  --------KQQGYQIVAAHFCDQAVPHYD-IDYTKPTAIVMGAEKNGVSAKAMDLVDHSI 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
             P+  +  SLN+S A  L++ E M   
Sbjct: 138 IVPMEGMVQSLNVSVAAALILSEAMHQR 165


>gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
 gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
          Length = 234

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81
             N+  + R      + ++  V     WP E  R  S   A A   ++ +    N+ +AI
Sbjct: 30  PNNVSAIIRTADAVGVHKVHAV-----WPKENMRVLSHTSAGARNWVE-LDTHDNMVDAI 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                   T  + +          + AI   + +   +   IIFG E+ G+T E +A+++
Sbjct: 84  --------THLKAQGMQVLATNLSDTAIDFRD-VDYTKPTAIIFGGEKNGITAEALAMAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             I  P+  +  SLN+S A  L+++E       +     ++   P
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179


>gi|259907580|ref|YP_002647936.1| putative methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224963202|emb|CAX54686.1| Predicted tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283477422|emb|CAY73338.1| hypothetical protein EPYR_00958 [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 15/171 (8%)

Query: 3   PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P +  L  + +   ++ L D     N+G + R+  +F    L LV+      S  A  ++
Sbjct: 185 PVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCAHFGAKGL-LVDDASLLESGAAVRTA 243

Query: 62  -ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A+ V            AI+   F     A  +  +  V       + L+      + 
Sbjct: 244 EGGAEHV-----------RAISGESFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAKM 292

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           V ++ G+ER GL++      +  +S        SLN+S A  +++ E    
Sbjct: 293 V-LVLGQERDGLSDSTFRQGDLSVSISGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
          Length = 249

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 19/159 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL       N+G + R+   F    + L   R    +     +SA A   I   RV +
Sbjct: 97  VLILDGILDPHNLGALIRSAHCFGANGIILPERRAASVTGTVIKTSAGAARHIPIARV-A 155

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL  A+ +L     +I+   AR     +SV  P                VG++ G E  G
Sbjct: 156 NLARALDELKTKGFWIFGADARA---DQSVSDPDYQGA-----------VGLVMGGESKG 201

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L        + +IS P+     SLN+S +  +++ E   
Sbjct: 202 LRPLIRKKCDDLISIPMLGKIDSLNVSVSGGIILHEIRR 240


>gi|254247898|ref|ZP_04941219.1| rRNA methylases [Burkholderia cenocepacia PC184]
 gi|124872674|gb|EAY64390.1| rRNA methylases [Burkholderia cenocepacia PC184]
          Length = 260

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P L        ++L   Q   N+G + R+     +       P   +  S K   S 
Sbjct: 103 PAHP-LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSG 160

Query: 62  ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A  ++    +  +++ EA+A+                 V                   
Sbjct: 161 MGAHFLLS---IHEDVEAEALAE------------RLDVPVALTDSHGAQAVYDCDLSGP 205

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V  +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 206 VAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
 gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
          Length = 286

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE----AI 81
           N+G + R+    N+    LV P    P   +A   S      +   R+  ++ +     +
Sbjct: 145 NVGAIFRSAAALNV-DAVLVTPTCCDPLYRRAVRVSMGTVFQVPWTRLGEDVHDWPGQGL 203

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             LH +   TA       ++    ++  + +  + + + + ++FG E  GL+   IA  +
Sbjct: 204 ERLHALGFKTA-------AMALSDDSVSLGDPTLAAEEKLALVFGTEGDGLSPRTIATCD 256

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             +  P++    SLN++ A  +  WE 
Sbjct: 257 YTVRIPMSHGVDSLNVAAASAVAFWEL 283


>gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
           14685]
 gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
           14685]
          Length = 250

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129]
 gi|2500862|sp|P75424|Y355_MYCPN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
           homolog
 gi|1674172|gb|AAB96129.1| tRNA/rRNA methyltransferase-like protein [Mycoplasma pneumoniae
           M129]
          Length = 242

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L + Q   N G + R      +  +          +     +S        ++   +N
Sbjct: 98  VMLHEIQDPHNFGAILRTCMAAEVDGIIFKKHNQAPINSTVIRTSMGTVFY-QNLVQVTN 156

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L  AI  L     +  ATT   R   K         +  ++RI       ++ G E  GL
Sbjct: 157 LSYAITTLQKHGFWTVATTLDERLKPKDYR-----QVDFDKRI-------LLVGNEDKGL 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
               +  ++  +  P+NP   SLN+S AV ++++  
Sbjct: 205 NALLLKNADLKVKIPMNPKLNSLNVSVAVGIILFGW 240


>gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 249

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+  + A    ++L D Q   N+G + R    F    +          + K   ++  + 
Sbjct: 97  PEQLDFANQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNPKVVQATMGS- 155

Query: 66  CVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +   ++ +++L+  I             R     V         + E    G+   I+
Sbjct: 156 --LSRTQIHYTDLESFI-------------RTVRLPVFGALLDGTSIYE-TRWGKEGLIL 199

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  G++ + + L +  ++ P      SLN++ A  +   E    
Sbjct: 200 MGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIFCNEIARM 246


>gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 249

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+  + A    ++L D Q   N+G + R    F    +          + K   ++  + 
Sbjct: 97  PEQLDFANQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNPKVVQATMGS- 155

Query: 66  CVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +   ++ +++L+  I             R     V         + E    G+   I+
Sbjct: 156 --LSRTQIHYTDLESFI-------------RTVRLPVFGALLDGTSIYE-TRWGKEGLIL 199

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  G++ + + L +  ++ P      SLN++ A  +   E    
Sbjct: 200 MGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIFCNEIARM 246


>gi|2222703|emb|CAB09926.1| rRNA methylase [Mycobacterium leprae]
          Length = 169

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 23/156 (14%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P++  N G   R         L LV P     S      +      + SV V ++L EA 
Sbjct: 24  PRIPPNTGNAIRTAAVTGCA-LHLVEPIGFDLSNPKLRRAGLDYHDLASVTVHTSLSEAW 82

Query: 82  ADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             L    ++A +                A  L   +       ++FG E  GL  +   L
Sbjct: 83  NALSPARVFAFST--------------LANTLFTDVSYQAGDVLMFGPEPTGL--DAATL 126

Query: 140 SNAIIS----FPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  I+     P+     SLN+S A  + V+E    
Sbjct: 127 ADDHITQQVRIPMLSGRRSLNLSNAAAVAVYEAWRQ 162


>gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 242

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1180]
          Length = 243

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC
           3083-94]
 gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC
           3083-94]
          Length = 243

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 12/168 (7%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  +RV           + +         N   V    EA   L +   +G  + ++
Sbjct: 146 AESVPLIRVT----------NLVRTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALV 194

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 195 MGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
           novicida 3523]
          Length = 248

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73
           ++IL + Q   N G   R+  +  +  + +  P+D     +   +  +  A      + V
Sbjct: 99  ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSSPVNATVKKVACGAAEH-TKIVV 155

Query: 74  FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL  AI  L     ++        ++  S+                  +V I+ G E 
Sbjct: 156 VTNLARAIEKLKQLGIWVIGLAGEADDSLYSMNLED--------------SVAIVAGAEG 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+     A  + +   P+     SLN+S A  + ++E +   
Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244


>gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC
           796-83]
 gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 3594-74]
          Length = 240

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 12/168 (7%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 83  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 142

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  +RV           + +         N   V    EA   L +   +G  + ++
Sbjct: 143 AESVPLIRVT----------NLVRTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALV 191

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 192 MGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239


>gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
 gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
          Length = 253

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 99  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 158

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 159 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 203

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 204 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253


>gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
           49176]
 gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
           49176]
          Length = 279

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L D     N+G + R      +T + +        + K   S+  +   +       +L
Sbjct: 140 VLEDTADPGNLGTIMRTAEAAGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPF-TYVEDL 198

Query: 78  KEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           KE I +L       YAT  +   ++K +                     II G E  GL+
Sbjct: 199 KETIKELKKSGISFYATHLKGEKSYKDIKY--------------SGRSAIIVGNEARGLS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +E   L++  +  P+     SLN + A  LM++E 
Sbjct: 245 DEVADLADTYVLIPMQGKVESLNAAVAAALMMYEV 279


>gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 267

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 12/169 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A ++ N     V + V      N G + R         +          S K   +SA 
Sbjct: 108 SAGKILNGKPSLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAG 167

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   +   R   N+K+ +  L          R +   ++A      V        Q    
Sbjct: 168 SLFHVPVAR-DPNIKDVLGQL----------RKSGMQIVATAADGEVDLAEADLSQPTAW 216

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  GL  E +  ++  +  P+     SLN++ A  + ++E  +  
Sbjct: 217 LFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQ 264


>gi|332974393|gb|EGK11319.1| rRNA methylase [Psychrobacter sp. 1501(2011)]
          Length = 159

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 66/165 (40%), Gaps = 20/165 (12%)

Query: 38  FNLTQLRLVNPRDGWPSE--------KARSSSANADCVIDSVRVFSNLKEAIADLHFIYA 89
             + +L +V+ R  +P +             S +A      V+VFS+ +E +  L     
Sbjct: 1   MGVEKLYVVDSRKLFPDDWEQLRQRKSLLKPSVSAIK-WTFVKVFSSTEECLDHLE---- 55

Query: 90  TTARNRNNFKSVLAPK---EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                      V +P    +  ++L +  ++ + + + FG E  G++   I  S A +  
Sbjct: 56  ----KYRYTSIVTSPHIKGQNNVLLQDGDYTQKRLAVWFGNESRGISEIAIKRSEACVQI 111

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            +  +  SLN++ +  ++++E  +      ++N + +       +
Sbjct: 112 EMAGMIESLNLATSTGIVLYEVTKQRRAYQQQNKRGRRVDPPVVQ 156


>gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX9]
 gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX9]
          Length = 263

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 17/166 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + L + R    S     +SA A   +   RV     +L++
Sbjct: 106 EDPHNLGALLRSADGAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQ 165

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++     R          P   A   N       +  ++ G E  GL +     
Sbjct: 166 MKRANIWVLGLDERG--------TPDYTAFDFN------SDCVLVLGSEGTGLHDLTKKT 211

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
            + ++  P+     SLN+S A  ++++E +          +K    
Sbjct: 212 CDHLLRIPMAGSVSSLNVSVAGAVVMYEALRQRSQPLPSALKPVKP 257


>gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 244

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  +   P   IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIAALDNPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AENVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
 gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
          Length = 248

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL +     N G + R     N+T + +   R    +     +S  A   I   R
Sbjct: 100 NPLLLILDELNDPHNFGSILRTADATNVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 159

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +NL +A+  L     +I+ T                      +   SG  + +I G E
Sbjct: 160 V-TNLGQALDKLKAAGFWIFGT--------------DMNGTPSTQWNTSG-KLALIIGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+++      + +++ P+N    SLN S A  ++++E   N 
Sbjct: 204 GRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii
           Sb227]
 gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 243

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 12/168 (7%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  +RV           + +         N   V    EA   L +   +G  + ++
Sbjct: 146 AESVPLIRVT----------NLVRTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALV 194

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 195 MGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|1717813|sp|P52393|TSNR_STRLU RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
           Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
           rRNA methylase; AltName: Full=Thiostrepton-resistance
           methylase
 gi|763508|gb|AAA99931.1| rRNA methyltransferase [Streptomyces laurentii]
          Length = 270

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 10/167 (5%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            S  G V++L   ++  NIG + R         + LV+   G  +++    ++    V  
Sbjct: 112 ESLSGDVVLLDGVKIVGNIGAIVRTRSALGAAGIVLVDSGLGTIADRRLIRASRG-YVFS 170

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V +   EA+A          R+    + V+   +  + + E     + + ++FG E+
Sbjct: 171 LPIVLATRDEALAFF--------RDGGM-RPVVFEADGKLSIGELDGIDERLVLVFGSEK 221

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G + E   ++   +S P+NP   SLN+S +  + +      ++   
Sbjct: 222 TGPSGEFAGVATESVSIPMNPAAESLNVSVSAGIALHRRARRNLSRP 268


>gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 235

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q   N+G + R   +F      +V+       ++K   S+  +   I  +R+   L  AI
Sbjct: 101 QDPGNLGTIIRTAHSFGF-DAVIVSETCVDEFNDKVIRSTQGSIFHIPVIRMP--LDVAI 157

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A +          +     V A        N +      + ++ G E  G+++  + L +
Sbjct: 158 AQI----------KAWNIPVYASYLGENTHNLQDIKTCPIAVVMGSEGSGVSDAVVDLCD 207

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
             +    +  F SLN++ A  ++ +   +
Sbjct: 208 GTVKIETS-QFESLNVAIASAIICYTLRK 235


>gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
 gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
          Length = 333

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL       N+G + R         + +   R    +     +SA A   +   RV +
Sbjct: 186 IIILDGITDPHNLGSILRTANAVGAHGVVIPKRRAIGLTAAVSKASAGAIEYVPVARVTN 245

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               +        ++  T               ++       I     + ++ G E  G+
Sbjct: 246 IAQTIDYLKEQNLWVVGT--------------DQSGEKSFYEIDLKGPIALVIGSEGEGM 291

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + +++ P+     SLN + A  ++++E ++  
Sbjct: 292 GKLVSEKCDFVVNLPMKGQISSLNAAVAGAIVMYEILKQR 331


>gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 313

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 10/166 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 154 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 213

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI  L        R R  +   L       ++ E  F    + ++ G E  
Sbjct: 214 ARVV-NLNKAIQGL--------RERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 263

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G++       +AI   P++    SLN S A  + ++       +++
Sbjct: 264 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAA 309


>gi|163840031|ref|YP_001624436.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162953507|gb|ABY23022.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 151

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 25/164 (15%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSNLKEA 80
           P++  N G   R       ++L LV P  G+  E ++   A  D   +  + V  +L  A
Sbjct: 5   PEIPGNTGNAIRLAAITG-SELHLVEP-FGFELEDSKLRRAGLDYHDLAVLHVHPDLPSA 62

Query: 81  IADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            A L    + A T+   +   S    +  A  +           ++FG E  GL  E   
Sbjct: 63  WAALAPERVLAFTS---DGEASYTDIEYQAGDV-----------LMFGPESVGLPAE--V 106

Query: 139 LSNAIIS----FPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++  ++     P+ P   SLN++ A  + V+E          +
Sbjct: 107 KTDPHVTSRVRLPMLPGLRSLNLANAASIAVYEAWRQHGFPGAQ 150


>gi|218781768|ref|YP_002433086.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763152|gb|ACL05618.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans
           AK-01]
          Length = 158

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 17/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+LV+P++  N G + R         L L+ P            +       + VR+ + 
Sbjct: 5   IVLVEPEIHWNTGNIGRTCLGAG-ADLHLIKPLGFSLDSSHVKRA--GLDYWEKVRLHTW 61

Query: 76  -NLKEAIADLHFIYATTARNRNNF-KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +  E           +A+ +N   +++L  K  A    +       + ++ G E  GL 
Sbjct: 62  GSFDE----------FSAKMQNAPDETLLFSKLGARPFWDMPSHMTRLFLVLGAETRGLP 111

Query: 134 NEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMEN 171
              +      +   P+     SLN+S    ++++E M  
Sbjct: 112 QGVLDQYPGNVYHVPITNEIRSLNLSTTAGIVLYESMRG 150


>gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
           M21/2]
          Length = 275

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 29/157 (18%)

Query: 27  NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKE---- 79
           N+G + R  A  N       L+ P    P   +A   S      +   ++ +   +    
Sbjct: 134 NVGAIFRSAAALNM---DAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPEN 190

Query: 80  ------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                 A+       A + R+               + +  + +   + I+ G E  GL 
Sbjct: 191 GSAQLHALGFKTAAMALSDRS-------------VSIDDAALAAEPKLAIVLGTEGDGLA 237

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           N  IA  +  +  P++    SLN++ A  +  W+   
Sbjct: 238 NSTIAACDYTVKIPMSHGVDSLNVAAASAVAFWQLGR 274


>gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 242

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
 gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
          Length = 253

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 99  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIE 158

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 159 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 203

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 204 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253


>gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC3059-06]
 gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
 gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 70585]
 gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CCRI 1974]
 gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS455]
 gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
 gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
 gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
 gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC3059-06]
 gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
 gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 70585]
 gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV200]
 gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS455]
 gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
 gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
 gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
          Length = 242

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae
           TIGR4]
 gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae JJA]
 gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae TIGR4]
 gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae JJA]
          Length = 242

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
 gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
          Length = 244

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 22/175 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S   P +++L       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PGLLASLDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  +RV +    L+       +I  T                 A     +     
Sbjct: 144 GAAETVPLIRVTNLARTLRFLQEQNVWIVGTAG--------------EADHTLYQSKLTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +     
Sbjct: 190 PLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRQA 244


>gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
 gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
          Length = 260

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 29/174 (16%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--- 68
           A   V++L+  +   N+G + RA        L LV       S +   +S  A   +   
Sbjct: 107 AAPLVLVLLGLEKPGNLGAILRAADGAG-ADLVLVAEGVDLFSPQVIRNSTGAVFALPVY 165

Query: 69  -----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                ++ R    L+E   +L  + AT             P+   +        G  V  
Sbjct: 166 PVAEGEAARF---LEE--HNLPLVAAT-------------PEGERLYWEGDYRGG--VAF 205

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + G E  GL       +   +  P+     SLN++    L+++E +      + 
Sbjct: 206 LLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGGAP 259


>gi|225452930|ref|XP_002278944.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 372

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            N+    R+        + +V+       +  R  S  A+  +D + ++++ +E    + 
Sbjct: 187 GNVSAAFRSADALGFQSVHVVSCDSSKRYKDNRHVSMGAEKWLD-IELWNSTQECFEVLK 245

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +                          I+ G E  G+++E + LS+ 
Sbjct: 246 SRGYRIATTHVGMDAVSIYDMDWTCP------------TAIVVGNENRGISDEALELSDL 293

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
             S P+  +  S N+S A  +++ 
Sbjct: 294 HCSIPMKGMVDSFNVSVAAGILMH 317


>gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC0288-04]
          Length = 242

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENSLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|296082972|emb|CBI22273.3| unnamed protein product [Vitis vinifera]
          Length = 369

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            N+    R+        + +V+       +  R  S  A+  +D + ++++ +E    + 
Sbjct: 184 GNVSAAFRSADALGFQSVHVVSCDSSKRYKDNRHVSMGAEKWLD-IELWNSTQECFEVLK 242

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +                          I+ G E  G+++E + LS+ 
Sbjct: 243 SRGYRIATTHVGMDAVSIYDMDWTCP------------TAIVVGNENRGISDEALELSDL 290

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
             S P+  +  S N+S A  +++ 
Sbjct: 291 HCSIPMKGMVDSFNVSVAAGILMH 314


>gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 249

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKNAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T     ++      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +E+
Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAER 249


>gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1003]
 gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1003]
          Length = 247

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 28/185 (15%)

Query: 3   PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSE 55
           P A  L     G      +++L       N+G   R           ++ PRD     + 
Sbjct: 80  PLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNA 137

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVL 111
            A   ++ A   +  + V +NL  A+ +L     +I  T+                A   
Sbjct: 138 TAAKVASGAADTVPYITV-TNLARALRELKEAGVWIVGTSG--------------EATKS 182

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                    V I+ G E  G+        + ++  P+     SLN+S A  + ++E +  
Sbjct: 183 LYETELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQ 242

Query: 172 SIVSS 176
             V  
Sbjct: 243 RSVKK 247


>gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 267

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVI 68
              ++IL   +   NIG + R      +  + L N +    +      S  +       I
Sbjct: 110 NSLILILDGIEKPGNIGAMLRTADAAGIHIIILCNMKTHIYNSNVIRCSLGSVFTRKIFI 169

Query: 69  DSV-RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + +  + S L+E   +   I  T       +       + A  L +   +  N+ IIFG 
Sbjct: 170 EKMGSIISWLQE---NKVKIVGT-----GFYNH-----QKAKNLYKTKLNYSNLAIIFGS 216

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G++N    ++N II+ P+     SLN+S A+ ++++E +   
Sbjct: 217 ENKGISNIWFNIANKIITIPMFGNVDSLNVSHAMSIIIYEIIRQR 261


>gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 250

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
           cancerogenus ATCC 35316]
 gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 243

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L      P   IL       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PDLIAGLDNPFFLILDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  +RV +             A T R     N   V    EA   L +   +G  
Sbjct: 144 GAAENVPLIRVTN------------LARTMRLLQEENIWIVGTAGEADHTLYQSKMTG-R 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 260

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L D     N+G + R         + L N      + K + S   +   ++ ++  ++
Sbjct: 119 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 176

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIA L       A +   + S+L P   A            V +I G E  G++ E 
Sbjct: 177 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 227

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AL++  +  P+     SLN + A  +M++
Sbjct: 228 EALADEKLYIPIKGRAESLNAAVAAGIMIY 257


>gi|297570796|ref|YP_003696570.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931143|gb|ADH91951.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 226

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 25/167 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLV-----NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +   NIG + R    FN++ + +V     N R    +++  +   +A+         S+L
Sbjct: 78  EHDLNIGSIVRTGNAFNVSGVHIVGKKKWNRRGALVTDRYLNVHHHAE--------VSSL 129

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            E            AR  +     +   E +  + E     +   +IFG+E  GL+ E +
Sbjct: 130 VE-----------WARENDYQLVAVDNMEGSTPIAETALP-ERAVLIFGQESNGLSAELL 177

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           A +++ +  P      S+N++ A  + +   +      +    + + 
Sbjct: 178 AAADSAVYIPQYGSTRSMNVAAAAAISMHMWIMQHGPRNAPAPESRP 224


>gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 294

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L   Q   N+G + R       + + L+       S K   ++  A   +        
Sbjct: 144 IVLDRVQDPGNVGTILRTADAAGASGVILLRGSADVYSGKVVRATMGALFHVPFAEGIAV 203

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L + +          A             +    ++      Q + I+FG E  G++ 
Sbjct: 204 MELMDFVRSERVTLCAAA------------CDDGACMHYAADLRQPLVIVFGNEANGVS- 250

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           EE+  ++  I  P+     SLN+S AV  +++E M   
Sbjct: 251 EELLAASEHIYIPMCGSAESLNVSAAVAAVLYEAMRQR 288


>gi|238896030|ref|YP_002920766.1| putative methyltransferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548348|dbj|BAH64699.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 361

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++      ++ +        L +  
Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFR 282

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + I +T++ N         PK               + +  G+ER GL++  I+ ++
Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLALGQERDGLSDAAISSAD 328

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++        SLN+S A  +++ E    
Sbjct: 329 LSVAIDGTGNVESLNVSVATGVLLAEWWRQ 358


>gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
 gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
          Length = 243

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  +   P   IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIATLDQPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|333025681|ref|ZP_08453745.1| putative rRNA methylase [Streptomyces sp. Tu6071]
 gi|332745533|gb|EGJ75974.1| putative rRNA methylase [Streptomyces sp. Tu6071]
          Length = 266

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 28/177 (15%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P        P+++L +P+   N G V R    F  +   +V   D  P   A   + 
Sbjct: 114 PPEPGFAGPRTSPLLVLDEPRNLGNAGAVIRLAAGFGASG--VVTTGDLDPWHPAVVRAG 171

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
                              A LHF    T   R     + A    A         G  V 
Sbjct: 172 -------------------AGLHFA---TPVARRAVPELPAGPLWAFDAEGEDLRGLRVP 209

Query: 123 ----IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               + FG ER GLT      ++ +++ P+ P   S N++ +V + ++     +   
Sbjct: 210 DDALLAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALYHWSLGAGRP 266


>gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 249

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAEK 249


>gi|296284574|ref|ZP_06862572.1| putative RNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 160

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 31/162 (19%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +   P I+LV+P++  N G V R     ++ +L L++P     ++     +         
Sbjct: 2   AIPSPSIVLVNPEIAGNTGAVGRTCVALDM-ELVLIHPLGFTITDTRLKRA--GLDYWQH 58

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--------GQNVG 122
           +R    L E             R+   F    +P+   + L E             ++  
Sbjct: 59  IR----LAEF------------RSWEAFFEERSPRADQLFLFEEYAPRDFYQPEYPEDAY 102

Query: 123 IIFGRERWGLTNE--EIALSNAIISFPV-NPLFPSLNISQAV 161
           ++FGRE  GL  E  E   +   +S P+ +    SLN++  V
Sbjct: 103 LVFGRETKGLPPEIVEAHRAQM-VSLPMKSDKVRSLNLANTV 143


>gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 246

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 17/157 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           IIL + +   N+G + R         + +   R    +     +S  A   +   RV + 
Sbjct: 97  IILDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVSLTATVAKASTGAIEYVPVARVTNL 156

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + E      +I+ T A+   +++              ++     + ++ G E  G++
Sbjct: 157 ARTVDELKERGVWIFGTDAKGTQDYR--------------QLDGVIPLALVIGSEGKGIS 202

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + ++  P+     SLN S A  L+++E   
Sbjct: 203 RLLRDKCDVLVRLPMIGHVTSLNASVAASLLMYEVYR 239


>gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 254

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L D     N+G + R         + L N      + K + S   +   ++ ++  ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIA L       A +   + S+L P   A            V +I G E  G++ E 
Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGVSPEI 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AL++  +  P+     SLN + A  +M++
Sbjct: 222 EALADEKLYIPIKGRAESLNAAVAAGIMIY 251


>gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
 gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
          Length = 242

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis]
 gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis]
          Length = 342

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 25/165 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNP-RDGWPSEKARSSSANADCVIDSV 71
           +++L   Q   N+G + R+   F    +  L    P      ++KA  +S  A      V
Sbjct: 185 ILVLEGIQDPGNLGTLVRSAVAFRWGGIFLL----PGCCDPFNDKALKASRGASF---QV 237

Query: 72  RVFS----NLKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            + S    +L EA+ D   +  +    A +         P            +   + ++
Sbjct: 238 PIVSGSWHHL-EALKDEFQMKMLAGHPASDDEQ-----TPVSELSQGFADSLADIPICLV 291

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            G E  GL+ + +     ++S P+   + SLN++ A  + ++   
Sbjct: 292 LGNEGQGLSEKSLQECQ-LVSIPMARNYESLNVAVAGGIFLYMLQ 335


>gi|152971435|ref|YP_001336544.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150956284|gb|ABR78314.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 361

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++      ++ +        L +  
Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFR 282

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + I +T++ N         PK               + +  G+ER GL++  I+ ++
Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLALGQERDGLSDAAISSAD 328

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++        SLN+S A  +++ E    
Sbjct: 329 LSVAIDGTGNVESLNVSVATGVLLAEWWRQ 358


>gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 268

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 22/150 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSNLKE 79
           N+G + R+     +    LV PR   P   ++   S      +   R+       + L+E
Sbjct: 133 NVGAIFRSAAALGV-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPGSVTRLQE 191

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A      + A    + +     LA +E            + + ++ G E  GL    +A 
Sbjct: 192 A---GWTVAAMALADDSVTLDELAAREP-----------ERLALVMGTEGDGLGTRTVAA 237

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +  +  P+     SLN++ A  + ++   
Sbjct: 238 CDVTVRIPMAGGVDSLNVAAASAVAMYTLR 267


>gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 252

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 22/165 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R         L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               EA + L ++  +G    II G E  G+
Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPT--IIMGAEGKGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                   + ++  P+     SLN+S A  + ++E +    V + 
Sbjct: 204 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 248


>gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708]
          Length = 323

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 26/174 (14%)

Query: 11  SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           S   PVI++        N+G + R         L +   R    +      +A A   ++
Sbjct: 155 SVTDPVIVVADGITDPHNLGAIIRTAEAIGSQGLVIPQRRASGITSTVVKVAAGA---LE 211

Query: 70  S---VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           +    RV  NL  A+  L     +IY T A       +V                  +  
Sbjct: 212 NFPVARVI-NLSRALEQLKEAGYWIYGTAAAGSEPIHTVKF--------------SGSTV 256

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  GL+       + ++S P+    PSLN S A  + ++E      +++
Sbjct: 257 LVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALYEIYRQRSLNT 310


>gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2]
          Length = 311

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 19/168 (11%)

Query: 10  NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + A+ P+++ L       N+G + R+   F    + +   R    +  A  +SA A   I
Sbjct: 156 DRAEAPLLVALDGITDPRNLGAIVRSAAAFGGHGVIIPERRAASMTAAAWKTSAGAAARI 215

Query: 69  DSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +V  NL  AI +L     F+                  +  + L E  FS   + I+
Sbjct: 216 KVAQVV-NLARAIDELKKQNVFVVG-------------LDMDGEVELPELTFSRDPLCIV 261

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G++       + I+S P+     SLN   A  + ++E     
Sbjct: 262 VGSEGKGISRLIADKCDQIVSIPIAATTESLNAGIAAAVSLYEVARTR 309


>gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 227

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 13/149 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +     NIG + R+ + F    L L   +        R+SSA A  +   + +  +
Sbjct: 86  VILDEVTDVGNIGAIVRSAYAFGADGLILSGMKTCNLEAILRTSSAAAFELP--IALVPS 143

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            K+ + +L  I  T           L   +   V  +++       +I G E  GL+ + 
Sbjct: 144 TKDMLNELKQIGFT-----------LYGADMDGVDVQKVTFAPKRALIMGSEGKGLSPKV 192

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV 165
               + ++S  +   F SLN+S A  ++ 
Sbjct: 193 KERLDTVVSIKMARAFDSLNVSAAAAILC 221


>gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 237

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +   ++  ++IL + Q   N G + R+   F +  + +        +E    +S  A 
Sbjct: 80  ENMARKSQSIILILDEIQDPRNFGALIRSAEVFGVDAIIIPERNSVRINETVVKTSTGAI 139

Query: 66  CVIDSVRVF--SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  V+V   SN  E +  + + +Y                   A   +      Q V 
Sbjct: 140 EYVPIVKVTNLSNTIEKLKKIDYWVYGAAG--------------EAESSSAEEQYPQKVV 185

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++ G E  GL  +     + +I  P+     SLN+S A  +++ E  +
Sbjct: 186 LVLGNEGTGLRKKVREYCDKLIKIPMRGKINSLNVSVAGGILLSEIAK 233


>gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
 gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
          Length = 370

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 23/167 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SNLK 78
             N+G + R+        + L   R    +      +A A   +   RV         LK
Sbjct: 177 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 236

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A    + +                  E      E +     + ++ G E  GL+     
Sbjct: 237 DA---GYRVVGLA--------------EEGDQTLEEVDLDGPLVVVTGSEDQGLSMLTRR 279

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             + +I  P+  + PSLN S A  L ++E      +   +       
Sbjct: 280 HCDHLIRIPLRGITPSLNASVATALCLYEVARRGWMKGLRGQNPSPQ 326


>gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
           bacterium Broad-1]
 gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
           bacterium Broad-1]
          Length = 318

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 12/163 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  ++ L       N+G + R+   F    + +   R    +  A  +SA A   I   +
Sbjct: 164 KPLIVALDQVTDPRNLGAIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQ 223

Query: 73  VFSNLKE--AIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +  ++  A  D    +        +    +  P+  A        +   + I+ G E 
Sbjct: 224 TVNLTRQLKAYQDAGCMVVGL-----DMEGDITLPELGAPD----GLADGPLVIVVGAEG 274

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+       + I+S P+     SLN   A  ++++   E  
Sbjct: 275 GGLSRLVQETCDQIVSIPMANSVESLNAGVAASVVLYAVAEAR 317


>gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 285

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G V R +       + LV       S +   ++  +   +   +  + 
Sbjct: 131 VALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAK--AT 188

Query: 77  LKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +  +A        +  T  +   +++SV   +               V ++ G E+ GL
Sbjct: 189 TEAFLAWRGGFSGLVAGTHLKGAVDYRSVDFSR-------------GPVLLMMGNEQQGL 235

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                A  + ++  P      SLN++ A  +M++E    ++
Sbjct: 236 PESLAASCDRLLRIPQAGRADSLNLAVATGIMLFEIRRGAL 276


>gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
 gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
          Length = 242

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N++ + +   R    +     ++  A   +   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +   +  + + T                     ++    G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|206577025|ref|YP_002237077.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
 gi|206566083|gb|ACI07859.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
          Length = 361

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++      ++ +        L +  
Sbjct: 224 PHNLGAIMRSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAERVEPITGDSFIDTLDQFR 282

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + I +T++ N         PK               + ++ G+ER GL++  I+ S+
Sbjct: 283 KAGYAIVSTSSHNGTPLFKAELPK--------------KMVLVLGQERDGLSDAAISSSD 328

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++        SLN+S A  +++ E    
Sbjct: 329 LSVAINGTGNVESLNVSVATGVLLAEWWRQ 358


>gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 235

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 66/161 (40%), Gaps = 13/161 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R      + ++  V  +        R ++  +   +        + +A+A+L
Sbjct: 30  PHNVSAIVRTCDAVGIHRVHTVWEKKYQFR---RGTAMGSQQWVRQTN-HDGINDAMAEL 85

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   + +     V    + A+   + +   +   I+FG+E++G T+E  AL++  I
Sbjct: 86  --------KGQGMQVLVTHLSDTAVDFRD-VDYTKPTAILFGQEKYGATDEAKALADQDI 136

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             P+  +  SLN+S A  L+++E      ++   N ++   
Sbjct: 137 VIPMMGMVQSLNVSVAAALVLYEAQRQRTIAGMYNTQQLPE 177


>gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23]
 gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa
           M23]
 gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 249

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L ++A G  ++LV    Q   N+G   R+     +T + +   +    +   R +S+ A
Sbjct: 90  DLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGA 149

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +   +L+E      +IY        +          A+ L        NV
Sbjct: 150 ADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL--------YALDLR------GNV 195

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            ++ G E  GL        + +   P+     SLN+S A  + ++E +    +
Sbjct: 196 ALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQRTL 248


>gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
           1-1C]
          Length = 280

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 33/169 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65
           I L   +   N+G + R         + L+       S +   ++  +            
Sbjct: 128 IALDRVRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPETVRATMGSIFSVPLYRCNES 187

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++    F            I  T  +   +++++              F    + ++ 
Sbjct: 188 TFLNWSTHFK---------GMIVGTHLKGSVDYRTID-------------FKNGPIILLM 225

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           G E+ GL++  +   + +   P      SLN++ A  +M++E   + + 
Sbjct: 226 GNEQQGLSDVLVNHCHKLARIPQCGHADSLNLAVATAIMLYEIRRSYLT 274


>gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 261

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTANAMGVH--AVIAPKDKSAGLNATVSKVACGA 157

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 158 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------ST 203

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 204 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260


>gi|254457129|ref|ZP_05070557.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
 gi|207085921|gb|EDZ63205.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
          Length = 259

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 61/145 (42%), Gaps = 14/145 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIAD 83
           EN+G +AR+     +    L  PR        +A   S      +  V ++ ++ + I +
Sbjct: 123 ENVGSIARSAAALGVDSYLL--PRQSPHPYGRRALRVSMGYVSKL-KVHIYEDISQTIQE 179

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L          ++ ++   A       L  ++ S Q   ++ G E  G++ E + + + +
Sbjct: 180 L---------KKDGYRIYAAEVTPDATLLSQVKSPQKWVLLMGHEGKGISQEVLDICDEV 230

Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC 168
           +S  + P   S N+S A  +M+++ 
Sbjct: 231 LSIEMAPGVKSFNVSVAASIMMYQL 255


>gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
 gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
          Length = 263

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 73/181 (40%), Gaps = 19/181 (10%)

Query: 1   MTPYAPQLQNSAKGP--VIIL--VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SE 55
           + P A  ++   +GP   +IL  V  Q   N+G + R+   F  T   L  P    P ++
Sbjct: 97  LVPPAHSVEKMLEGPGEALILIAVGLQDPGNLGTLIRSAEAFGATG-VLTTPGTVSPWNQ 155

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           KA  +SA +   +       +  E +             +   K + A K+ A+ + E  
Sbjct: 156 KAMRASAGSVFRLPVAVATPDAMETLE------------QQGIKLLAAMKDDAVAIGEAD 203

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +  +  I+ G E  GL  + + L++  ++ P      SLN + A  ++++E        
Sbjct: 204 LTVGS-AILIGNEGAGLNEDWLRLADQRVTIPCPGWVESLNAAVAGSILLYEASRQRGAR 262

Query: 176 S 176
           +
Sbjct: 263 T 263


>gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 290

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 10/155 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL D Q   N+G + R         +   +      +EK    +  +   +    V   
Sbjct: 143 VILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADIYNEKVLRGAMGSVFHLP---VLQT 199

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A+                 + +    +    L+  + + + VGII G E  G++   
Sbjct: 200 --GALEKTVLFL-----KEQGTRMIGTSLQGKTSLSASLAAQKAVGIILGNESKGMSKSM 252

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             L + +   P+     SLN+S A  +++++    
Sbjct: 253 ADLCDDLYKLPMYGHAESLNVSVAAGILMYDIARA 287


>gi|332701318|ref|ZP_08421406.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551467|gb|EGJ48511.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 196

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 23/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L    KG  +++ +     N+  + R+   F +  + L      +P    +SS++    V
Sbjct: 17  LARRQKGLTLVIDNVHDPHNVSAILRSCDAFGVPSVHLYYTTSAFPVLGQKSSASARKWV 76

Query: 68  I-----DSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +     D+  ++  L     D +F + AT    R   K + A   +A             
Sbjct: 77  MRTRHSDATSMYRGL----KDQNFQVLATGFSERA--KPLTAWDLSAP-----------T 119

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +I G E  G + E   +++  I  P+  +  SLN+S A  ++++E         
Sbjct: 120 AVILGNEHNGASPELAQVADGEIYIPMMGMVQSLNVSVAAAIILYEAWRQRWAKG 174


>gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
           92-3]
 gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
           92-3]
          Length = 255

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 98  PDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 157

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 158 AENVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLFQSKMTG-PMA 204

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 205 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 254


>gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 249

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 23/180 (12%)

Query: 7   QLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
           +L ++ +G   +++L       N+G   R   +       ++ P+D     +   +  ++
Sbjct: 86  ELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVGAH--AVIAPKDRAVGINATVQKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L++      ++  TT              + A           
Sbjct: 144 GAAETVPYITVTNLARTLRQLQERDIWVVGTT--------------DDAEESLYEPDYSG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            V  + G E  G+        + +++ P+     SLNIS A  + ++E     I+   ++
Sbjct: 190 GVAFVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLYEARRQRIMKMRQD 249


>gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
 gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
 gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
          Length = 249

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L ++A G  ++LV    Q   N+G   R+     +T + +   +    +   R +S+ A
Sbjct: 90  DLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGA 149

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +   +L+E      +IY        +          A+ L        NV
Sbjct: 150 ADRLPVIAVVNLARSLRELQKQDVWIYGLAGEVETSL--------YALDLR------GNV 195

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            ++ G E  GL        + +   P+     SLN+S A  + ++E +    +
Sbjct: 196 ALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQRTL 248


>gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
           defluvii]
 gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
           defluvii]
          Length = 246

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 11/168 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              +++L   +   N+G + R      +  + +   R    +     +SA A   +  V 
Sbjct: 90  TPLLVLLDGVEDPHNLGAILRTAEASGVQGVFIPERRAVGLTSVVAKASAGAVDYMP-VG 148

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL   I           R ++    V A    A      +     V ++FG E  G+
Sbjct: 149 RVPNLSRLIE----------RLQDAGIWVYALDAEAPKAYTELDFSGPVALVFGGEGTGV 198

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
                   +     P+     SLN+S +  ++++E +      + K +
Sbjct: 199 RPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLYEALRQRREGAGKKL 246


>gi|317151947|ref|YP_004119995.1| TrmH family RNA methyltransferase, group 3 [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942198|gb|ADU61249.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 266

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
            ++    +I L   Q   N+G++AR ++      L +   +  +    A  SSA A   +
Sbjct: 112 PDAPLPLIIALDQVQDTGNVGVLARTLYALGGAGLIVCQHQGAYLGAGAVRSSAGALNKL 171

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-IIFGR 127
              +   NL  A+ D            N   ++   +     LN      +    ++ G 
Sbjct: 172 PVAK-AGNLAAALKDCA----------NYDYTLYYAQTGEGSLNAYEAELKTPAVLVLGN 220

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  G+      L +  +S P    F SLN++QA  ++V E    
Sbjct: 221 EEKGVRPGVAKLCHHSLSIPFRREFDSLNVAQAGAVLVSEFSRR 264


>gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
 gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
          Length = 251

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 34/169 (20%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72
           + IL + +   N+G + R         + +   R    +     +SA A     V+    
Sbjct: 103 IFILDEIEDPHNLGAIVRTANLCGAHGVIIPKRRAVGITATVVKASAGAIAYTPVVKVTN 162

Query: 73  VFSNLKE--------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +   + E        A AD+                          L  R      +G++
Sbjct: 163 LAKTIDELKKRGMWFACADMD-----------------------GELMYRCNLTGPMGLV 199

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G E  G++       + ++S P++    SLN S A  ++ +E +   +
Sbjct: 200 IGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAGVLGYEVVRQRM 248


>gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           CNB-2]
 gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44]
 gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           CNB-2]
 gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44]
          Length = 256

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 21/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G   R      +    ++ P+D      A  +  ++ A   +    V +
Sbjct: 104 VLDGVTDPHNLGACLRVADGAGVH--AVIAPKDHAAGINATVAKVASGAAETVPYFMVTN 161

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               LKE      +I  T+    +  K +                     ++ G E  G+
Sbjct: 162 LARTLKELKERGIWIIGTSG---DADKHLYQMDLTGP-----------TALVLGAEGDGM 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   +A++S P+     SLN+S A  + ++E +   + ++
Sbjct: 208 RQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEALRQRLAAA 251


>gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
           Ech586]
          Length = 244

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L + A   +++L       N+G   R+     +    +V PRD     +  A+  +  A 
Sbjct: 89  LASHATPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVACGAA 146

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +  +RV +NL   +  L     +I  T                 A     +      +
Sbjct: 147 ETVPLIRV-TNLARTLRFLQEQNIWIVGTAG--------------EADHTLYQSKLTGPL 191

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            ++ G E  G+        + +IS P+     SLN+S A  + ++E +    V
Sbjct: 192 ALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRAV 244


>gi|171318091|ref|ZP_02907260.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5]
 gi|171096715|gb|EDT41600.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5]
          Length = 260

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 18/170 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           A  L        ++L   Q   N+G + R+     +       P   +  S K   S   
Sbjct: 104 AQPLPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMG 162

Query: 64  ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A  ++    +  +++ +A+A                  V                   V 
Sbjct: 163 AHFLLS---IHEDVEPDALAG------------RLDVPVALTDSHGAQAVYDCDLAGPVA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 208 WVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
           DSM 245]
 gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
           DSM 245]
          Length = 248

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 11/165 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             ++   ++IL   +   NIG + R         + L+  R    +     +SA A   +
Sbjct: 94  PRNSAPLLVILQGLEDPHNIGAIIRTAEAAAADAVVLIEGRGAPVNAAVHKASAGA---L 150

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             +R+       +  L  I             V A    A +            ++ G E
Sbjct: 151 SHMRICK-----VKSLVRIM---EYLHERGFRVYAADMDAELNYTDADLKGPTALVLGAE 202

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             GL+ E +    + +  P+     SLN+S    ++++E M   +
Sbjct: 203 GSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILLYEAMRQRL 247


>gi|260462507|ref|ZP_05810714.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259031703|gb|EEW32972.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 265

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 12/151 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++LV     +N+G + R    F    + +          KA   S  A   I       
Sbjct: 122 VVVLVGISNHDNMGSIFRNAAAFGADAVLIDATCCDPLYRKAIRVSVGAALKIPFASFTD 181

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                 A    + A     R   +  L+P+           S   + +  G E  GL   
Sbjct: 182 T-----AGFTAMLA----ERGFEQFALSPR--GRTDIRDAKSAGRLALYLGTEGEGLPES 230

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +A     +   +   F SLN++ A  + + 
Sbjct: 231 LLARLQT-VRITMAEGFDSLNVAAASAIALH 260


>gi|42523228|ref|NP_968608.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575433|emb|CAE79601.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 258

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 10/167 (5%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +   S    V +L + +   N+G + R        ++ L          K   ++    
Sbjct: 99  REQAESKLPLVFVLDNIRSAFNVGSIFRTAECLGAEKIYLCGYTPLPTQWKVEKTAMGTQ 158

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        L E + +L        ++       L    +A  L E+ F  +    + 
Sbjct: 159 EYLAWEE-APKLLECLEEL--------KDEGYRIVALETAASASDLFEK-FESEPTAFVL 208

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G ER+GL  E + + + +   P+     SLN+     +  +E M   
Sbjct: 209 GNERFGLDPEVLKIIDEVRIIPLRGRKNSLNVGVTAAVAGFEWMRQW 255


>gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 237

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 19/163 (11%)

Query: 15  PVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           P+ ILV    +  +N+G + R+   F +  + +   R    +     +SA A   +   R
Sbjct: 87  PLFILVLNHLEDPQNLGAILRSAEAFGVHGVIIPKRRAVQVTGAVAKASAGAYLKVPVAR 146

Query: 73  ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V   L+       ++    A+++ +                       + ++ G E 
Sbjct: 147 CTNVAETLRYLKEKGAWVVGADAKSKASLWDTDF--------------KLPLALVIGGEN 192

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GLT+  +   +  +S P+     SLN S A  L++ E +   
Sbjct: 193 VGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVVRQR 235


>gi|329890251|ref|ZP_08268594.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845552|gb|EGF95116.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 151

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 13/153 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L  P +  N+G   R    F++ +L ++ P      ++A   +A     +  +   ++  
Sbjct: 5   LFQPDIPHNVGACIRLSACFDV-ELHVIQPTSFNFDDRAMKRAALDYGPLSHMTRHADW- 62

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A            R+R   + VL    AA  L + +F   +V ++FG+E  G  +   A
Sbjct: 63  DAFQ----------RDRAPGRLVLFTTRAAEPLTDFVFQPDDV-LLFGKESAGSPDYVHA 111

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++A I  P+ P   SLN+S +  + + E +  
Sbjct: 112 AADARIYIPIRPEARSLNLSVSAGIGLHEALRQ 144


>gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 332

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 10/169 (5%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 172 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 231

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI         + R R  +   L       ++ E  F    + ++ G E  
Sbjct: 232 ARVV-NLNKAIQ--------SLRERGWYAIGLD-GGGDKLVGETGFETDPLVVVLGSEGK 281

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           G++       +AI   P++    SLN S A  + ++       ++++  
Sbjct: 282 GMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVANARRLAAKTE 330


>gi|256830639|ref|YP_003159367.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579815|gb|ACU90951.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 201

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 37/195 (18%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L +     N+  + R+   F +  + L   ++ +PS  A SSS +A   ID  R   
Sbjct: 26  TLVLNNIHDPHNVSAILRSCDAFGVFGVHLYYTKEKFPSL-ANSSSGSAKKWIDLTRH-- 82

Query: 76  NLKEA---IADLH----FIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +EA   I  L      I  T    TAR       ++                +   II
Sbjct: 83  --REAGPMIQGLRGRGMQIVGTGFSPTAR------PIMDIDFT-----------RPTAII 123

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            G E  G+  +        I  P+  +  SLN+S A   +++E M   + +   +     
Sbjct: 124 LGNEHRGMDPDVKIHVPDEIYIPMFGMVQSLNVSVAAATILYEAMRQRLAAGMYD----Q 179

Query: 185 TPATKGELLSFLDYL 199
           +P    E        
Sbjct: 180 SPLDTDEFEDVYADW 194


>gi|116791065|gb|ABK25846.1| unknown [Picea sitchensis]
          Length = 236

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 63/148 (42%), Gaps = 28/148 (18%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA---IA 82
            NIG + R    F ++++ LV  R  +      +  ++   +  + R F  L++A   + 
Sbjct: 14  HNIGTLVRTATAFGVSEVILVG-RKDFN-----AFGSHGSTLHLNFRHFYTLQQAHQYLK 67

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D           +++    +   + AI ++E  F  ++   + G E  GL+++E+ + + 
Sbjct: 68  D-----------KDSDICGVEIADGAIAVHEHPFK-KSTAFLLGNEGTGLSSKEMEICDY 115

Query: 143 IISFPVNPLFP----SLNISQAVLLMVW 166
            +       +     SLN++ A  +++ 
Sbjct: 116 FVYI---SQYGCGTASLNVTVAASIVLH 140


>gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 249

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 23/179 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ P+D     +      ++
Sbjct: 87  ELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVAS 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E      ++  T               + A     R     
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA--------------DEAEQDLYRADFKG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            + ++ G E  G+        +A++S P+     SLN+S A  + ++E +    V   K
Sbjct: 191 PIALVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRSVVPAK 249


>gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus
           denitrificans BC]
 gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
           denitrificans BC]
          Length = 248

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64
           +    A   +++L       N+G   R           ++ P+D      A  +  ++ A
Sbjct: 93  EADGVANPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGISATVAKVASGA 150

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +    V +    L E      ++  T+                A     ++     V
Sbjct: 151 AETVPYFMVTNLARTLGELKERNIWVIGTSG--------------DADKTLYQVDLKGPV 196

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 197 ALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALRQR 247


>gi|220903658|ref|YP_002478970.1| TrmH family RNA methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867957|gb|ACL48292.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 268

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 12/161 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANA 64
            ++ +    ++ L   Q   N+G + R ++      + L  PR    +    AR S+A A
Sbjct: 109 AVEQAPLPIILALDQVQDPGNVGTLCRTLYALGGAGIIL--PRHNSAYLGPAARRSAAGA 166

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +   RV +NL  A+ D       T           +    A  +           ++
Sbjct: 167 LEHLPVARV-TNLGHAL-DSAEEAGLTIYGAGGQNGPASVDAFAEPVR------LPAVLV 218

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            G E  GL    +     ++  P+   F SLN++QA  +++
Sbjct: 219 LGNEEKGLRPGIVKRCAHMLRIPLARSFDSLNVAQAGAILL 259


>gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 225

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 11/156 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG V++L       N G + RA   F +    LV      P   A   +++         
Sbjct: 79  KGSVVLLDRIFDPMNYGAIIRAANCFGIKT-ILVGLDRQAPITSAVCKASSG-------T 130

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +F    + +  ++   A   + + N  +  A      V  + +   +   II G E  G+
Sbjct: 131 IFYT--DIVGAVNTATAL-KKLQENGYTAYAADVNGKVELKDVEFAEKSIIIMGSEGKGI 187

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
               +  ++  I  P+N    SLN+SQ+  ++++E 
Sbjct: 188 RPALLDTADVHIKIPMNGDIDSLNVSQSAAVILYEY 223


>gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           M334]
 gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           M334]
          Length = 253

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N++ + +   R    +     ++  A   +   R
Sbjct: 105 NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKTATGAIEHVPIAR 164

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +   +  + + T                     ++    G  + +I G E 
Sbjct: 165 VTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIALIIGNEG 209

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 210 KGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253


>gi|291008734|ref|ZP_06566707.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 253

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPS 54
           M P A  L++ A  P  +L+        N+GM+ R      +  + +    V   D    
Sbjct: 89  MRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVI 148

Query: 55  EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           + +   + +A  +    +   +  E + +  +              + A +  A      
Sbjct: 149 KASAGVAFHAPVL--RAQTAGHAAELLTEAGY-------------PLYALEAGAQESIYE 193

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              G     + G E  GL+ +        ++ P+     SLN++ A  ++ +E +  +
Sbjct: 194 ADFGSRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRT 251


>gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591]
 gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591]
          Length = 244

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 24/176 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  +   P +++L       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PGLLAALATPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  +RV +NL   +  L     +I  T                 A     +    
Sbjct: 144 GAAETVPLIRV-TNLARTLRFLQEQNIWIVGTAG--------------EADHTLYQSKLT 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +    V
Sbjct: 189 GPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRAV 244


>gi|212705009|ref|ZP_03313137.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
 gi|212671561|gb|EEB32044.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
          Length = 196

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 21/190 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +      ++L +     N+  + R+   F + ++ L      +P    R +SA+A   
Sbjct: 17  LAHRQPDLTLVLANIHDPHNVSAIYRSCDAFGVDKVHLYYTDTPFPVL-GRKTSASARKW 75

Query: 68  IDSVRVFS--NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++SVR      L+ ++   +  I ATT       K +                 +   II
Sbjct: 76  VESVRHRDRQELETSLRAQNMQILATTFTP--TAKPLRTWDFT-----------RPTAII 122

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            G E  G+  E I++++  +  P+  +  S N+S A  +++ E       +   +     
Sbjct: 123 MGNEHSGVNEELISMADGELYIPMYGMIQSFNVSVASAIILSEACRQREAAGFYDSPRLE 182

Query: 185 TPATKGELLS 194
                 EL  
Sbjct: 183 P----DELER 188


>gi|94986799|ref|YP_594732.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
 gi|94731048|emb|CAJ54411.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
          Length = 196

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   ++L +     N+  + R+   F +  + L      +P   ++SS++    V     
Sbjct: 22  KNLTLVLANIHDPHNVSAIYRSADAFGIDTIHLYYTDTPFPKLGSKSSASAKKWV--KTI 79

Query: 73  VFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +  + I     D + + AT+  +             A  L    F+G +  II G E
Sbjct: 80  YHQSANKLIRMLKEDNYKVIATSCTS------------QAQPLLSHNFTG-STAIIMGNE 126

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             G+  E   L ++ +  P+  +  S N+S A  +++ E     + +   N  
Sbjct: 127 HAGVPPELTGLVDSELYIPMYGMVQSFNVSVAAAIILAEASRQRLSAGMYNTP 179


>gi|226326847|ref|ZP_03802365.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
 gi|225204684|gb|EEG87038.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
          Length = 167

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 15/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-----CVIDSV 71
           I+L +P++  N G + R   N     L L+ P  G+  +  R   A  D      +    
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFH-LHLIQPL-GFTWDDKRLRRAGLDYREFADIKQHH 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             ++ L+     L+   A +      F   L  K      N     G    ++FG E  G
Sbjct: 62  DYYAFLES--EGLNPDNAQSPSGARVF--ALTTKGTPAHSNVSYQDGDY--LLFGPETRG 115

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +        I  P+     S+N+S  V ++V+E    
Sbjct: 116 LPPYVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQ 157


>gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
 gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           MolK2]
 gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           IPO1609]
 gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
 gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           MolK2]
 gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           IPO1609]
          Length = 249

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 23/179 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62
           +L +   GP ++LV        N+G   R           ++ P+D      A  +  ++
Sbjct: 87  ELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINATVAKVAS 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E      ++  T               + A     +     
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA--------------DEAEQNLYQADFKG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            + ++ G E  G+        + ++S P+     SLN+S A  + ++E +        +
Sbjct: 191 PIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAQ 249


>gi|221194595|ref|ZP_03567652.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626]
 gi|221185499|gb|EEE17889.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626]
          Length = 220

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 56/209 (26%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76
           +LV+P++  N G + R       T L LV P      +K+   +  A     +V V+ N 
Sbjct: 5   VLVEPEIPANTGNIGRTCVVSG-THLHLVGPLGFSLDDKSLKRAGMAYWKSLNVSVYDNW 63

Query: 77  --LKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-----GIIFGR 127
               E   +AD+  + A    +  N  +V  P+   +    +    Q        +IFG+
Sbjct: 64  NQFVEKNGLADMPNVSADDFTHDVNDGAVDKPRLHFLTKKAKKTYTQATYRDGDYLIFGK 123

Query: 128 ERWGLTNEEIAL-SNAIISFPVNPL----------------------------------- 151
           E  GL+ E +A  ++     P+                                      
Sbjct: 124 ESLGLSEELLAKYADECERIPMLQDSVSLVNREDWSQKHDALDGEDQYSHPVLLQQDICG 183

Query: 152 ---------FPSLNISQAVLLMVWECMEN 171
                      +LN+S A  ++++E +  
Sbjct: 184 NFIDPNEFSVSALNVSNAAAIVLYEALRQ 212


>gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
 gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
          Length = 548

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 23/167 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SNLK 78
             N+G + R+        + L   R    +      +A A   +   RV         LK
Sbjct: 334 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 393

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A    + +                  E  + L E    G  + I+ G E  GL+     
Sbjct: 394 DA---GYRVVGLAG-------------EGDVTLAEADLEG-PLAIVTGSEGQGLSLLTRR 436

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             + +I  P+  + PSLN S A  + ++E      +   K       
Sbjct: 437 HCDQLIRIPLRGVTPSLNASVATAMCLYEVARRGWMKDLKGQAPSPP 483


>gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1]
          Length = 260

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
            IL + +   N+G + R         + +   R    +     +SA A       +V + 
Sbjct: 114 FILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNI 173

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E + D    +A                +    L  +     ++G++ G E  G++
Sbjct: 174 SKTIEE-LKDRGMWFACA--------------DMDGELMYKCNLTGSLGLVIGNEGSGVS 218

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                  + ++S P+     SLN S A  ++ +E +   +
Sbjct: 219 RLVKEKCDYVVSVPMKGDIDSLNASVAAGVLAYEVVRQRM 258


>gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
           29799]
 gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
           29799]
          Length = 284

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 29/156 (18%)

Query: 27  NIGMVARAMWN--FNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE---- 79
           N+G + R+            LV P    P   +A   S      I   R+  +  +    
Sbjct: 142 NVGAIFRSAAALHM---DAVLVTPTCCDPLYRRAVRVSMGTVFQIPWTRIGDSPADWPEK 198

Query: 80  ------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                 A+       A +    +N  S+  P   A            + I+ G E  GL+
Sbjct: 199 GLSRLNALGFKTAAMALS----DNSVSIDDPALMAED---------KLAIVLGTEGDGLS 245

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +  IA  +  +  P++    SLN++ A  +  W+  
Sbjct: 246 HTTIAHCDYTVRIPMSHGVDSLNVAAASAVAFWQLR 281


>gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614]
 gi|118437741|gb|EAV44377.1| rRNA methylase [Stappia aggregata IAM 12614]
          Length = 275

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 20/173 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             ++ S     + L   +   N+G + R +       + LV       + +A  ++  + 
Sbjct: 118 RDIEPSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRATMGSL 177

Query: 66  CVIDSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   ++    F +L        +     A +         P  A  VL          
Sbjct: 178 FHVPLAKLGKDEFKSLAA-----TWPGTVAATHLKGSVDYRTPDYAEPVL---------- 222

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            ++ G E+ GL ++  A    +I  P      SLN++ A  + ++E     + 
Sbjct: 223 -LVMGNEQKGLEDDMAAACPTLIRIPQVGQADSLNLAVATGVALYEIRRKHLE 274


>gi|288549949|ref|ZP_06390860.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317311|gb|EFC56249.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 199

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    L+       S  A  ++   A+ V        ++ +AI  
Sbjct: 62  PHNLGAMMRSCAHFGVKG-VLLQDAALLESGAAIRTAEGGAEHV--QPITGDSVLDAIEQ 118

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      R    S++     A     +    + + ++ G+ER GL++  ++ ++  
Sbjct: 119 F----------RKAGYSIVTTSSHAATPLFKATLPRKMVLVLGQERDGLSDAALSSADLS 168

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        SLN+S A  +++ E    
Sbjct: 169 VSIDGTGNVESLNVSVATGVLLAEWWRQ 196


>gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 219

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 42/196 (21%)

Query: 7   QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           Q  +  +  + +L++      NI  + R      +                    + +A 
Sbjct: 11  QTLDRRQPDLTVLMEDVHKPHNISAIIRTCDAVGV-------------------MAVHAM 51

Query: 65  -----DCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                  V+D+    +   E   DL        A       +       K  A  L++R 
Sbjct: 52  NQVADGDVLDTYSQVAQGSEKWVDLNRHPDVTVAI------DQLHQQNFKIYAAHLSDRA 105

Query: 116 FS------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                    Q   I+ G ERWG+++    L +  I  P+  +  SLN+S A  ++++E  
Sbjct: 106 VDYRTIDYTQPTAILMGAERWGVSDTAAELVDGHIIIPMLGMVQSLNVSVAAAVILFEAQ 165

Query: 170 ENSIVSSEKNVKEQNT 185
              + +   +    + 
Sbjct: 166 RQRLQAGFYDQPRLDP 181


>gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311]
 gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           CC9311]
          Length = 589

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 18/173 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G + R+        + L   R    +      +A A   +   RV +   +L+   
Sbjct: 355 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 414

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           +  + +                  E   +  E +     + I+ G E  GL+       +
Sbjct: 415 SSGYRVIGLA--------------EEGDLTLEEVDLDGPLVIVTGSEGQGLSMLTRRHCD 460

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            +I  P+  + PSLN S A  L ++E      +   K  +  +   T+ +L  
Sbjct: 461 QLIRIPLRGVTPSLNASVATALCLYEVARRGWMKGLKG-QNPSPRITRPQLAG 512


>gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240355]
          Length = 234

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 73  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 130

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 131 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 176

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 177 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 233


>gi|242238337|ref|YP_002986518.1| methyltransferase [Dickeya dadantii Ech703]
 gi|242130394|gb|ACS84696.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
          Length = 349

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    LV       S  A  ++   A+ V        NL +A++ 
Sbjct: 212 PHNLGGIVRSCAHFGVNG-VLVRDASQLESGAAVRTAEGGAEHV--KAIQSDNLIDALSQ 268

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      R    +++                    I+ G+E  GL++      +  
Sbjct: 269 F----------RKAGYTIVTTSSHKGTALYDTQLPARTVIVLGQESDGLSDGAWQQGDMK 318

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        SLNIS A  +++ E   +
Sbjct: 319 VSINGTGNVESLNISVATGILLAEWWRH 346


>gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 257

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  A   ++IL       N+G + R     N+  + +   R    +     +S  A   I
Sbjct: 105 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 164

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV +    L +  A   +I+ T             P +          +   + ++ 
Sbjct: 165 PIARVTNLSQTLDKLKARGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 209

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++       + +I+ P+N    SLN S A  ++++E   N 
Sbjct: 210 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes
           MGAS8232]
 gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 248

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  A   ++IL       N+G + R     N+  + +   R    +     +S  A   I
Sbjct: 96  EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 155

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV +    L +  A   +I+ T             P +          +   + ++ 
Sbjct: 156 PIARVTNLSQTLDKLKARGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 200

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++       + +I+ P+N    SLN S A  ++++E   N 
Sbjct: 201 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
 gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
 gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
          Length = 248

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  A   ++IL       N+G + R     N+  + +   R    +     +S  A   I
Sbjct: 96  EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 155

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV +    L +  A   +I+ T             P +          +   + ++ 
Sbjct: 156 PIARVTNLSQTLDKLKARGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 200

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++       + +I+ P+N    SLN S A  ++++E   N 
Sbjct: 201 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
           SCF1]
 gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
           SCF1]
          Length = 243

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLAQFDNPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
 gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
          Length = 326

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 21/173 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-NADCV 67
           Q++    +++L +    +N G + R+      +   +V+ R+  P   A S ++  A  V
Sbjct: 165 QSNRSPVILVLDEIHDPQNFGAILRSAHFLGCSA-VVVSDRNTAPLSPAVSRASVGALEV 223

Query: 68  I---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGI 123
           +   D +    NL E +          A + +    V+        V + ++  GQ   +
Sbjct: 224 MVANDKLMKARNLHEML----------AVSGDFGWRVVGASSGPNSVTSTKLSDGQPTIL 273

Query: 124 IFGRERWGLTNEEIALSNAIISFP---VNPL--FPSLNISQAVLLMVWECMEN 171
           + G E  GL          ++  P    +      SLN+S A  ++++E + +
Sbjct: 274 VMGNEHRGLRKHIRQCCQDVVIIPGQATDEDTRVDSLNVSVASAILLYELLHH 326


>gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 259

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +   +IL   Q   N+G + R      +  + +        S K   ++  A   
Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166

Query: 68  IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++ V      +   A LH  + AT++  R+    +                 + VG +FG
Sbjct: 167 LNVVEHC-TFESVHARLHVPLLATSSHARHAVFDMPL--------------NKPVGWVFG 211

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G++ + +++    IS P      SLN++ A  + ++E +   
Sbjct: 212 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQR 256


>gi|300781270|ref|ZP_07091124.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300532977|gb|EFK54038.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 269

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 33/173 (19%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +       V + V      N G + R           LV+         A   + +   
Sbjct: 111 SVLTGRPKLVAVCVGTNDPGNAGTIIR-----------LVD----ALGADAVIFAGDTVD 155

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-------- 118
             +S +V  +   ++  +       AR R+   ++   + A + L      G        
Sbjct: 156 -PESPKVVRSSAGSLFHVPV-----ARERDVNGAIGQLRAAGLKLAATTMGGEVSLDDPG 209

Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
               Q    +FG E  GL ++ +A ++  +S P+     SLN+S A  + +WE
Sbjct: 210 NALDQPTAWLFGNEAHGLPDDVLAAADYRVSIPIKGSAESLNLSTAASICLWE 262


>gi|325285781|ref|YP_004261571.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324321235|gb|ADY28700.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 151

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 68/162 (41%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I+L +P++  N G + R       + L LV P     ++K    +         +  +++
Sbjct: 5   IVLFEPEIPNNTGNIGRLSLASG-STLHLVKPFGFELNDKRVKRA--GLDYWQHLDLKIY 61

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++    E  +D  F +  +A+   N+  +                  N+  +FG+E  G
Sbjct: 62  DSITHFFEVHSDKKFAF-LSAKAEKNYYEIDYED--------------NMFFVFGKESVG 106

Query: 132 LTNEEIA-LSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           L    +    N++   P+ +    SLN++ AV +++++ +++
Sbjct: 107 LPASVVEKHKNSLYKIPLFSEHIRSLNLANAVSIVIYDAIKS 148


>gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
           F0421]
 gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
           F0421]
          Length = 255

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 22/152 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
             NIG + R+   F +    +V P+      SE     SA A   +  + V       ++
Sbjct: 118 PHNIGAIVRSADQFGV-DAVIV-PQRHSAGDSEIIAKISAGATAWVPLIEVPNLVRTAEQ 175

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
              +  ++Y   A      K +  P              Q   +I G E  G+       
Sbjct: 176 CKKEGFWVYGADASGEPIGK-LSFP--------------QKTLLILGSEGSGIARLLKNC 220

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +++I+ P      SLN+S A  ++++E   +
Sbjct: 221 CDSLIAIPTRGKLDSLNVSVAAGILLYEIRRS 252


>gi|90407844|ref|ZP_01216020.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3]
 gi|90311019|gb|EAS39128.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3]
          Length = 228

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           M+P        + N  +  + +L++      N+  + R      +  +     R+   ++
Sbjct: 1   MSPERFARITNMLNHRQPELTVLLEDVHKSHNLAAIVRTADAVGVNDVH--ATRETKTTK 58

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
               ++  +   +  +    N+++AIA          R +          + AI   E +
Sbjct: 59  VCGVTATGSQNWV-KIHTHENIEDAIA--------ALRAQGMQIIATNLSDTAIDFRE-V 108

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +   I+ G+E+ G++ + +AL++  +  P+  +  SLN+S A  L+++E       +
Sbjct: 109 DYTKPTAILMGQEKTGISAQALALADQDVIIPMLGMCQSLNVSVASALILYEAQRQRENA 168

Query: 176 S 176
            
Sbjct: 169 G 169


>gi|328907932|gb|EGG27692.1| putative rRNA methylase [Propionibacterium sp. P08]
          Length = 271

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 14/163 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L +      +I    +   N G V R    F    + L        + K   SS  +  
Sbjct: 112 KLPDEDVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIF 171

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGI 123
            +  +     L +A+   H         R    SVLA       L+    SG+    +  
Sbjct: 172 HLPVIVGVE-LADAVEWAH--------QREM--SVLAADGGGHSLDAVARSGRLKRPIAW 220

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + G E WGL   + AL++ ++  P+     SLN+S A  ++++
Sbjct: 221 LMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLY 263


>gi|227502757|ref|ZP_03932806.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|306835344|ref|ZP_07468367.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|227076487|gb|EEI14450.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|304568777|gb|EFM44319.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 156

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+  +P +  N G   R       + L L+ P      +K    +      +  V++  +
Sbjct: 6   IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADVQIHKD 64

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                EA+     ++A T      F  V              +   +V ++FG E  GL 
Sbjct: 65  FDACMEALPG-ARVFAFTTHTDKWFTDV-------------EYQDGDV-LLFGTEPTGLP 109

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +E +        +  P+ P   S+N+S +    V+E    
Sbjct: 110 DEHVNHPRITDQVRIPMVPARRSMNLSNSASTAVFEAWRQ 149


>gi|291557091|emb|CBL34208.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
          Length = 262

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL + Q   NIG + R+   F++  + L        + K   S+  +   +       +
Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLP--IYCCD 175

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +EAI  L      T  +           + ++ L E     Q   ++ G E  G+++  
Sbjct: 176 TEEAITLLQ-KGGFTVYSAELS-------DRSVKLGEEKLP-QKTAVVIGNEGNGVSDTV 226

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             L +  +  P++    SLN S A  ++ WE  +
Sbjct: 227 KKLCDKSLFIPISSA-ESLNASVAASVIAWEMSK 259


>gi|291530276|emb|CBK95861.1| rRNA methylases [Eubacterium siraeum 70/3]
          Length = 262

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL + Q   NIG + R+   F++  + L        + K   S+  +   +       +
Sbjct: 118 IILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLP--IYCCD 175

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +EAI  L      T  +           + ++ L E     Q   ++ G E  G+++  
Sbjct: 176 TEEAITLLQ-KGGFTVYSAELS-------DRSVKLGEEKLP-QKTAVVIGNEGNGVSDTV 226

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             L +  +  P++    SLN S A  ++ WE  +
Sbjct: 227 KKLCDKSLFIPISSA-ESLNASVAASVIAWEMSK 259


>gi|189346688|ref|YP_001943217.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
 gi|189340835|gb|ACD90238.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
          Length = 179

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 69/168 (41%), Gaps = 10/168 (5%)

Query: 4   YAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A +L+ S K PV ++L + +   N+G + R      + ++ L       P ++   ++ 
Sbjct: 15  SAEELEASPKYPVYLMLHNIRSMWNVGSMFRTADAAGIERIILTGYTATPPRKEIDKTAL 74

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  V+        L +AI  L        +        L   E + +    +     + 
Sbjct: 75  GAQDVVKWEYSADPL-DAIDRL--------KAEGVRICGLEIAENSRLYTAIVKEEFPIC 125

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++ G E  G+ +E ++  ++++  P   +  SLN++ A  + ++E + 
Sbjct: 126 LVVGNEVDGIDDEVLSCCDSVLEIPQYGVKHSLNVAVAAGVALFELVR 173


>gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815]
 gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815]
          Length = 266

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 20/178 (11%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
            L        ++L   Q   N+G + R+     +       P   +  S K   S+  A 
Sbjct: 106 PLPERVTHGCVVLDGVQDAGNVGSILRSAAAAGIGH-VFCAPGTAYAWSSKVLRSAMGAH 164

Query: 66  CVIDSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            ++   ++  +++    I  L    A T                             V  
Sbjct: 165 FLL---QIHEDIEAPTLIQLLDVPVAIT-------------DSHGAEAIYETDLSGPVAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           +FG E  G++          ++ P      SLN++ A  + ++E          +  +
Sbjct: 209 VFGNEGAGVSQPWRDAVTYRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRGKGARTAR 266


>gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 237

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 30/163 (18%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L   +   N+G + R+   F +  + L   R    +     +S  A   I    + S+ +
Sbjct: 94  LDRIEDPHNLGAIFRSADAFGVAGIVLPKDRSATITNTVVKASTGAVFYIPFS-IVSSFR 152

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---------GIIFGRER 129
            A+                       KEA   L      G+++         G++ G E 
Sbjct: 153 LALKKF--------------------KEAGGWLIGLESGGKSISNYSFPFPLGLVAGSEG 192

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+   + L +  ++ P+     SLN+S AV + ++   +  
Sbjct: 193 KGLSKTTLKLLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQ 235


>gi|291276915|ref|YP_003516687.1| putative rRNA methylase [Helicobacter mustelae 12198]
 gi|290964109|emb|CBG39953.1| putative rRNA methylase [Helicobacter mustelae 12198]
          Length = 251

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVFSN 76
           IL       NIG + R+ +   +  + L   R G+  E    +S  A  ++     V  N
Sbjct: 109 ILHGITDTGNIGSIFRSAYCLGVDGIVLCGVR-GFSIEGVLRTSVGA--ILQMPFCVVEN 165

Query: 77  LKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + + I +L           AR                    RI   Q   +  G E  GL
Sbjct: 166 ILDVIHELKNEKTLCLGADARGEEEG---------------RIAGVQKWALFLGSENTGL 210

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            ++ ++  + I++  ++  F SLN+  A  ++
Sbjct: 211 PSQVLSKLDRILAIKMHRGFNSLNVGVAAGIL 242


>gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri
           ATCC BAA-895]
 gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIAKFDNPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRLLQEENIWIVGTAGEADHTLFQSKMTG-RMA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|149369726|ref|ZP_01889578.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
 gi|149357153|gb|EDM45708.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
          Length = 179

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 10/161 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +    +IIL + +   NIG V R    F + ++ L       P +  + ++  A   +  
Sbjct: 23  TKTPLIIILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIQKTALGATESVAW 82

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRER 129
                N ++ I         + +N       +   E ++ L +  +   +   ++FG E 
Sbjct: 83  -EHVENTEDLI--------VSLKNEGVTICAIEQAEQSVSLEKYEVSKDKTYAVVFGNEV 133

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G+    +  S+ +I  P      SLNIS +  ++VW+  +
Sbjct: 134 KGVQQTVVTESDVVIEIPQYGTKHSLNISVSTGVVVWDFFK 174


>gi|322831470|ref|YP_004211497.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
 gi|321166671|gb|ADW72370.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
          Length = 367

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 12/150 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+  +F +  + + +P         R++   A+ V        N  E +   
Sbjct: 230 PHNLGGIMRSCAHFGINGMMVQDPAQLESGAAVRTAEGGAEHV--KAISADNFLEVLETF 287

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++           +      + ++ G E  GL++      +  +
Sbjct: 288 ----------RKAGYTIVTTSSHKGTALGKAQLPAKMVLVLGEESDGLSDSAWQQGDLSV 337

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           S        SLN+S A  +++ E    +  
Sbjct: 338 SIGGTGKVESLNVSVASGILLAEWWRQNQA 367


>gi|319403813|emb|CBI77397.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
 gi|319406821|emb|CBI80454.1| RNA methyltransferase [Bartonella sp. 1-1C]
          Length = 158

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R    F L  + ++ P     S++    +      ++   +  +
Sbjct: 5   IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFNLSDRNLKRA--GMDYLERASLERH 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L     D      T  R     + +L     A      I+  +N  ++FGRE  G+ +  
Sbjct: 62  L-----DWQSFIDTMQR---FNRRLLLLSTKAQTYYTEIYYQKNDVLLFGRESAGVPDYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++  ++ P+ P   SLN++ +V ++  E +  
Sbjct: 114 YKAADYALTIPMLPHARSLNLAISVAMVTGEALRQ 148


>gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis]
          Length = 186

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 32/153 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R++      ++  V     +   K   S++ A   I    V+ ++     
Sbjct: 60  KDPGNVGSLIRSLAAMGCRRILAVTGCCYFWEVKVLRSASGAHFYIP---VYEDI----- 111

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI----A 138
                               +       L    F    + ++ G ER GL+ + +     
Sbjct: 112 --------------------SWNRMLDYLPHDFFRDTEIVLVVGSERTGLSEQALRFGEQ 151

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   +  P+      LN + A  L+ +E  + 
Sbjct: 152 HAGKRLHIPMTNDKFCLNSAVAATLIAFEIRKQ 184


>gi|256824064|ref|YP_003148024.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256687457|gb|ACV05259.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 271

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 20/169 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q    G  ++    +   N+G + R      +  +   +P   W +      S       
Sbjct: 118 QPDGPGLYVVAEHLEKPGNLGAILRTADAAGVDAVIAADPVTDWGNPNVVRGSKG----- 172

Query: 69  DSVRVFSNLKEAIAD----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
               VF ++  A A     L F+       R        P     VL+ ++     V I 
Sbjct: 173 ---TVF-SVPVATAPTPEVLDFLAG-----RGMTLVATTP--HTEVLHTQVDLTGPVAIA 221

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G E+ GLT   +  +   +  P+     SLN++ +  ++V+E +   +
Sbjct: 222 VGAEKTGLTASALEGATHRVRIPMVGRANSLNVATSAAIVVYEAVRQRL 270


>gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b]
          Length = 244

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 60/172 (34%), Gaps = 16/172 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S + P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLESIENPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R         V    EA   L +       + 
Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEYQIWIVGTAGEADHTLYQSKLPAA-LA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +     
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRQA 244


>gi|224436469|ref|ZP_03657483.1| rRNA methylase (SpoU class) [Helicobacter cinaedi CCUG 18818]
 gi|313142980|ref|ZP_07805173.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128011|gb|EFR45628.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 156

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 27/162 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+LV+PQ+ +N G + R     + + L L++P      +K    +        +++V+  
Sbjct: 6   IVLVEPQIPQNTGNIGRLCVATD-SILHLIHPLGFSVEQKELKRA--GLDYWQNLQVYEW 62

Query: 76  -NLKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            NLKE      I + HF ++T                 A  L  +    Q   + FGRE 
Sbjct: 63  QNLKEFWEKHPINERHFFFST----------------KAKKLYYQADFSQGGFLYFGRED 106

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL +  +A S      P+     S+N++ +V   ++E +  
Sbjct: 107 RGLDSS-LAESARAYRLPMVKGIRSVNLATSVGAALYEGLRQ 147


>gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO]
 gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae
           TMO]
          Length = 233

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 19/166 (11%)

Query: 9   QNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +    G  I+L    VDP    N+G + R      ++ + +   R    +      SA  
Sbjct: 77  ETYLDGDFIVLLDHIVDP---HNLGAIIRTCVGAGVSAIVITKDRSAKITPAVVKVSAGT 133

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I  V + +N          I  T  + +N    V         L E  F    V I+
Sbjct: 134 VFRIP-VVIVTN----------IVYTIEKLKNKGYWVYGADMNGKNLYEEGFI-SPVAIV 181

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           FG E  GL+       + +IS P+     SLN+S +  ++++E   
Sbjct: 182 FGNEGEGLSRLVKERCDQLISIPMRSKIDSLNVSVSAGIILFEISR 227


>gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
           484]
 gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
           484]
          Length = 335

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 54/169 (31%), Gaps = 20/169 (11%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVID 69
               V+ L       N+G V R+   F      LV P  R    +  A   SA A   + 
Sbjct: 182 RPALVVALDGVTDPRNLGAVLRSAGAFGAHG-VLV-PERRAAGVTASAWKVSAGAAARVP 239

Query: 70  SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             RV      L+       F+         +             + E  F+   + ++ G
Sbjct: 240 VARVTNLVRTLQAYKEAGVFVVGLDGGGDQS-------------VAELAFAEDPLVLVVG 286

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            E  GL+       +AI S P+     SLN   A  + ++E       +
Sbjct: 287 SEGKGLSRLVREQCDAIASIPIASAVESLNAGVAAGIALYEVARRRGEA 335


>gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
          Length = 250

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 264

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  + L   Q   N+G + R         + L+       +EK   S+ +A   + ++ +
Sbjct: 117 GLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSA---LCNIPI 173

Query: 74  FS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           F    L E    +      T   +  N K               I   +   II G E  
Sbjct: 174 FEDVTLSEFYDFIKDNTIKTYVTSLENAKPYHT-----------ISYPKRTMIILGNEGN 222

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G++ E I + +  I+ P+     SLN+S A  L +++  E 
Sbjct: 223 GVSREIIEMCDQAITIPMYGDIESLNVSIAAALCMYKVREQ 263


>gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 264

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  + L   Q   N+G + R         + L+       +EK   S+ +A   + ++ +
Sbjct: 117 GLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSA---LCNIPI 173

Query: 74  FS--NLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           F    L E    +      T   +  N K               I   +   II G E  
Sbjct: 174 FEDVTLSEFYDFIKDNTIKTYVTSLENAKPYHT-----------ISYPKRTMIILGNEGN 222

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G++ E I + +  I+ P+     SLN+S A  L +++  E 
Sbjct: 223 GVSREIIEMCDQAITIPMYGDIESLNVSIAAALCMYKVREQ 263


>gi|158334676|ref|YP_001515848.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304917|gb|ABW26534.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 153

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 20/161 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSV 71
            ++LV P++  N G +AR       T+L LV P  G+         A  D      + + 
Sbjct: 3   RVVLVYPEIPPNTGNIARTCAAT-QTELHLVEPL-GFEISNRYLKRAGLDYWPFVKLQTH 60

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             ++  ++             R +   +SV   K +      +    ++  +IFG E  G
Sbjct: 61  ASWAAFEQV------------RQQQGGRSVSFSK-SGTHSYLQFQFCEDDWLIFGSESSG 107

Query: 132 LTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
           L  + +  S+A++  P+ +    SLN+S +  + ++E    
Sbjct: 108 LPPDILQDSSAVLRIPMAHEQVRSLNLSVSAAVGLFEARRQ 148


>gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
           25986]
 gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
           25986]
          Length = 302

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 21/170 (12%)

Query: 8   LQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +  GP  V++L       N G + R+        + + N R    +  +  +SA A 
Sbjct: 139 LDRAGDGPALVVVLDHVTDDGNFGAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAV 198

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   +V  N+  A+ DL     ++   + R   +     AP E              V
Sbjct: 199 MHLPIAQV-PNIARALDDLKAAGFWVSGASERAEGSCWD--APFE------------GRV 243

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ G E  G++   +   + +   P   +  SLN++QA   + +E +  
Sbjct: 244 ALVMGSEGDGISRLVLEKCDFLTKLPQRGMTESLNVAQATTALCFEWLRR 293


>gi|312891695|ref|ZP_07751205.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
 gi|311295879|gb|EFQ73038.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
          Length = 177

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 16/161 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++L + +   N+G + R    F + Q+ L       P+ +   ++  A   ++  + 
Sbjct: 24  PVAVVLDNVRSLHNVGSIFRTSDAFAVEQICLCGITGLPPNREIEKTALGATQSVNW-KH 82

Query: 74  FSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           + +  +AI     D + I A     +    ++L   E           G+   +IFG E 
Sbjct: 83  YPSTLDAIHQLRVDGYLIIA---IEQAVDSTMLNQFEP--------IPGEKYALIFGNEV 131

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G+ +E +   +  I  P      S NI  +  +++W+   
Sbjct: 132 NGVADEVMEQIDGCIEIPQFGTKHSFNIVVSAGIILWDFFS 172


>gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 331

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 10/156 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           SA+   I L      +N+G V R+   F +  + L   R    +  A   SA A   +  
Sbjct: 172 SARPLFIALDGITDPQNLGAVIRSAAAFGVNGVILPERRSASVNAAAWKVSAGAAAHMPI 231

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI           + R  +   L     + ++ E  F    + ++ G E  
Sbjct: 232 ARVV-NLTKAIE--------ALKERGYYSIGLD-GGGSKLVGETGFETDPLVVVLGSEGK 281

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL+       +AI S P+     SLN S A  + ++
Sbjct: 282 GLSRLTREACDAIASIPITSAVESLNASVAAGIALY 317


>gi|240168029|ref|ZP_04746688.1| putative 23S rRNA methyltransferase [Mycobacterium kansasii ATCC
           12478]
          Length = 261

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 13/154 (8%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V+     N G + R         + L        + K   +SA +   I ++ V      
Sbjct: 114 VEISEPGNAGTLIRIADAMGAAAVILAGHSVDPYNGKCLRASAGS---IFNIPVV----- 165

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNEEI 137
           A+AD H         R     VLA         +      G     +FG E  GL+ E  
Sbjct: 166 AVADTHAAI---VSLRGAGLQVLATAVDGETSLDDADPLLGVATAWLFGPESHGLSAEIA 222

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++  +  P++    SLNI+ A  + +++    
Sbjct: 223 GAADHRVRIPMSGRAESLNIAAAAAICLYQSARA 256


>gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Achromobacter xylosoxidans A8]
          Length = 245

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 7   QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           ++ +  +GP  ++IL       N+G   R      +    ++ PRD     +   +  + 
Sbjct: 87  EVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNATVQRVAC 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A   +  + V +             A T R+ ++    ++   + A     +I + Q +
Sbjct: 145 GAADTVPYLMVTN------------LARTMRSLKDRGVWLVGTDDQATDSMHQIDARQPM 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + G E  G+        + +++ P+     SLN+S A  + ++E +   
Sbjct: 193 AWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1]
 gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1]
          Length = 255

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 94  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 151

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 152 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------ST 197

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 198 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254


>gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Neisseria meningitidis 8013]
          Length = 250

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 249


>gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
 gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
          Length = 247

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L + +   N+G + R      +  + +   R    +     +S  A   I   RV +   
Sbjct: 100 LDELEDPHNLGSIMRTADASGVHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAQ 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + E      ++  T A+  ++++              R+     + ++ G E  G+   
Sbjct: 160 TIDELKERGVWVAGTDAKGADDYR--------------RLDGTLPICLVIGSEGKGIGRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                + +I  P+     SLN S A  ++++E   
Sbjct: 206 IRDKCDFLIKMPMVGHVTSLNASVAASILMYEVYR 240


>gi|189911203|ref|YP_001962758.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775879|gb|ABZ94180.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 257

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID 69
             +GPV+IL   Q   N+G + R      +    L++ RD  P +      SA A   I 
Sbjct: 105 PNEGPVLILDRIQDPGNLGNLLRTAECMGVKH-VLMSDRDTSPITPVVEKVSAGAIHHI- 162

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +   +NLK     + F+       +N +  +   +E    + E +     + +I G E 
Sbjct: 163 QIYRVANLK---HGIDFL------KKNEYWILATDEEGEEGIWETLPDVSQMAVIMGNEG 213

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            G+    +  ++ +   P+     SLN+  A  + +
Sbjct: 214 EGVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 249


>gi|330723254|gb|AEC45624.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis MCLD]
          Length = 175

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L  P++  N G + R+ +  N  +L ++ P       +     A    + D    + S
Sbjct: 4   IVLYQPEISPNTGNIIRSCFATN-AKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEIHS 62

Query: 76  NLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           N  E +             YAT   +  +FK +               + +++ ++FG E
Sbjct: 63  NYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRD-------------NNEDIFLMFGTE 109

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+    ++   N  +  P+     SLN++ +V+++++E +  
Sbjct: 110 STGIPKSILSKNLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQ 153


>gi|304373120|ref|YP_003856329.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis HUB-1]
 gi|304309311|gb|ADM21791.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis HUB-1]
          Length = 175

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 66/164 (40%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L  P++  N G + R+ +  N  +L ++ P       +     A    + D    + S
Sbjct: 4   IVLYQPEISPNTGNIIRSCFATN-AKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEIHS 62

Query: 76  NLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           N  E +             YAT   +  +FK +               + +++ ++FG E
Sbjct: 63  NYDEFVKKYGDKKIFYITRYATQTYSDVDFKQIRD-------------NNEDIFLMFGTE 109

Query: 129 RWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+    ++   N  +  P+     SLN++ +V+++++E +  
Sbjct: 110 STGIPKSILSKNLNTCLRIPMQEKSRSLNLANSVVIVIYEVLRQ 153


>gi|193212910|ref|YP_001998863.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
 gi|193086387|gb|ACF11663.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
          Length = 178

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 19/149 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N+G + R      + ++ +       P ++   ++  A   +   R F++  EA+     
Sbjct: 40  NVGSMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQLTVPW-RHFADPLEALSVLKG 98

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                ++       +   S L P +  +VL            + G E  G+ +E +A  +
Sbjct: 99  EGCK-VFGLEIAENSRSYSSLQPDDYPLVL------------LVGNEVDGIGDELLARCD 145

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++  P      SLN+S A  + ++EC+ 
Sbjct: 146 GVLEIPQYGTKHSLNVSVAAGVALFECVR 174


>gi|183221112|ref|YP_001839108.1| TrmH family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779534|gb|ABZ97832.1| Putative tRNA/rRNA methyltransferase, trmH family [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 233

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID 69
             +GPV+IL   Q   N+G + R      +    L++ RD  P +      SA A   I 
Sbjct: 81  PNEGPVLILDRIQDPGNLGNLLRTAECMGVKH-VLMSDRDTSPITPVVEKVSAGAIHHI- 138

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +   +NLK     + F+       +N +  +   +E    + E +     + +I G E 
Sbjct: 139 QIYRVANLK---HGIDFL------KKNEYWILATDEEGEEGIWETLPDVSQMAVIMGNEG 189

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            G+    +  ++ +   P+     SLN+  A  + +
Sbjct: 190 EGVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 225


>gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 251

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 14/167 (8%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68
            AK  +++L +     N+G   R+     + Q  +V PR      +  A  ++  A   +
Sbjct: 97  PAKPLLLVLENVTDPHNLGACLRSADAAGV-QAVIV-PRRNAAGLTPVACRTAVGAAESL 154

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
               +  NL   +  L        R+R     V    E          + +++ ++ G E
Sbjct: 155 AYYEI-GNLASLLDQL--------RDRGV-WVVGTALEERSESLFTFQAPESLAVVMGAE 204

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             GL        + ++  P+     SLN+S A  +M+++      V 
Sbjct: 205 GSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRAQRSVE 251


>gi|194334189|ref|YP_002016049.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
           271]
 gi|194312007|gb|ACF46402.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
           271]
          Length = 181

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            +   + K PV IIL + +   N+G + R      + ++ +       P ++   ++  A
Sbjct: 18  EEYNAAEKHPVTIILHNIRSMYNVGSIFRTADAAGIEKVIITGYTATPPRKEIDKTALGA 77

Query: 65  DCVIDS------VRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
              +        + V   +KE  IA       T +R   +      P             
Sbjct: 78  QETMAWEYFAHPLEVIPAMKEKGIAICGLEITTNSRAYTDVDRSDFP------------- 124

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              + +I G E  G+ ++ +   + I+  P      SLN+S A  + ++E + 
Sbjct: 125 ---LCLILGNEVQGIDDDILEQCDHILEIPQFGTKHSLNVSVAAGVALFEMVR 174


>gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032]
 gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter
           turicensis z3032]
          Length = 257

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+  +F +    +V       S  A  ++      ++ +    +  +A+A  
Sbjct: 120 PHNLGAIVRSCAHFGVKG-VVVQDASLLESGAAVRTAEGGAEHVEPIT-GDSFSDALAQF 177

Query: 85  H---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +   TT+ ++        P   A +        + + ++ G+E  G++    A ++
Sbjct: 178 RAAGYAIVTTSSHKG------TPLFKATL-------PKKMVLVLGQESEGISEATQANAD 224

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +S        SLN+S A  +++ E    
Sbjct: 225 LSLSIDGTGNVESLNVSVATGVLLAEWWRQ 254


>gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
           thiooxidans DMS010]
 gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
           thiooxydans DMS010]
          Length = 246

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 29/177 (16%)

Query: 6   PQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSS 61
             L  S   P +  IL   Q   N+G   R           ++ P+D     +  A   S
Sbjct: 87  MTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAGAH--AVIAPKDRASGLTATAVKIS 144

Query: 62  ANADCVIDSVRVFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           + A   +   +V +       L++A     ++  T+              ++ + L +  
Sbjct: 145 SGAAERVPFAQVTNLSRLMRELQDA---GVWLVGTSG-------------DSELSLFQAE 188

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G ++ I+ G E  G+        + ++  P+     SLN+S A  + ++E     
Sbjct: 189 LKG-SMAIVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLYEAYRQR 244


>gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 285

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 12/153 (7%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V      N G + R         +            K   +SA +   I   R   N+K+
Sbjct: 143 VLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVAR-DPNIKD 201

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            +           + R++   VLA      V        Q    +FG E  GL  E +  
Sbjct: 202 VL----------GKLRSSGMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDE 250

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  +  P+     SLN++ A  + ++E ++  
Sbjct: 251 ADMRVRIPILGRAESLNLATAASICLYESVKQQ 283


>gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19]
 gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11]
 gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1]
 gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291]
 gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae FA19]
 gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11]
 gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291]
 gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae FA19]
 gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11]
          Length = 250

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------ST 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249


>gi|239622239|ref|ZP_04665270.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514236|gb|EEQ54103.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 292

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 20/150 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
             N G V RA        +  V+      + K   S+A +   +    +  +  E     
Sbjct: 142 PGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLP--VLAMSTDEFFTWT 199

Query: 82  ADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            D +       +Y T  R          P+    VL ++        ++FG E  GL  +
Sbjct: 200 GDHNMDVWAADVYGTEERK---------PESLPAVLADKAAVEAPKTVLFGNEARGLEPD 250

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +     I+S P+     SLN+  +  +M+
Sbjct: 251 ILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|327539925|gb|EGF26526.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase,
           SpoU, predicted [Rhodopirellula baltica WH47]
          Length = 156

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 23/168 (13%)

Query: 12  AKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--- 67
            + P  ++L  P++ +N G + R        +L +V P      EK    +   D     
Sbjct: 1   MQPPAHVVLYQPEIPQNTGNIGRTCVAVG-AKLWIVEPASFQFDEKRLRRA-GLDYWQYL 58

Query: 68  -IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             + V  +  L E +    F + + +  R              V       G    ++FG
Sbjct: 59  DWEPVPSWDVLCERLNPERFFFFSKSAKRT-------------VWEAEFALGD--VLVFG 103

Query: 127 RERWGLTNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           RE  GL    +   +   +  P+     SLN+S    + ++E    +I
Sbjct: 104 RETSGLPASILKPDDPRSLRLPMREQVRSLNLSVTAGIALYEHQRQTI 151


>gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
 gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
 gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1]
 gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169]
 gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1]
 gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1]
 gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1]
 gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8]
 gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7]
 gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72]
 gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1]
 gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E]
          Length = 290

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 19/161 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R      +  + L   +    +      S  A  VI  + V +  
Sbjct: 134 VLDQITDAHNLGACLRTACAMGVDAVILPRHQSAPITPTVAKVSVGASEVIPVISVTNLA 193

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L++      FI+ T        KS     E           G  V II G E  G+  
Sbjct: 194 RTLEKMKKSGVFIFGTA-----LDKSAKPAFECDF--------GGKVAIIMGSEGDGMRR 240

Query: 135 EEIALSNAIISFPVNPLF---PSLNISQAVLLMVWECMENS 172
               + + ++  P+  +     SLN+S A  ++++E M   
Sbjct: 241 LTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLYEVMRQR 281


>gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
           R2A62]
 gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
           R2A62]
          Length = 260

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 15/167 (8%)

Query: 8   LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L    + P ++L+       N+G V R+   F  + +  ++      +     +++ A  
Sbjct: 103 LGEEGRAPRVVLLDRVTDPHNVGAVLRSAEVFGASAVVAMSRHAAPETGALAKTASGALE 162

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGI 123
               VRV  NL +A+             +     VL     A         G+    V +
Sbjct: 163 RQPYVRV-RNLADAME----------TLKGMGYIVLGLDGEAEGTIGAALEGKRDRPVAL 211

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + G E  GL  +     +A++       F SLN+S A  + ++   E
Sbjct: 212 VLGAEGPGLREKTKETCDALVKIDFAGGFGSLNVSNAAAVALYASRE 258


>gi|213962459|ref|ZP_03390721.1| SpoU protein [Capnocytophaga sputigena Capno]
 gi|213954785|gb|EEB66105.1| SpoU protein [Capnocytophaga sputigena Capno]
          Length = 220

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R    F + Q   +  R G   +   +    A   +D V  +++ +  I    
Sbjct: 43  HNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAM--GAQKWVD-VFRYNDTQSCID--- 96

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T R +        P + A  LN+   + +     FG E+ GL+ + ++ ++  + 
Sbjct: 97  -----TLRTQGYQIVATTPHKNAYFLNDFDIT-KKSAFFFGTEKEGLSAQVLSQADTFLK 150

Query: 146 FPVNPLFPSLNISQAVLLMV 165
            P+     SLNIS AV +++
Sbjct: 151 IPMVGFTESLNISVAVAIVL 170


>gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
           fluorescens SBW25]
 gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
           fluorescens SBW25]
          Length = 251

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 21/166 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+        L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 100 VLDGVTDPHNLGACLRSADAAGA--LAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               EA + + ++  +G  + +I G E  G+
Sbjct: 158 LARTLEKLQQRGLWVVGTAG-------------EAEVSIYDQDLTGPTI-LIMGAEGKGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                   + ++  P+     SLN+S A  + ++E        ++ 
Sbjct: 204 RRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEARRQRGAKAKT 249


>gi|94986333|ref|YP_605697.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
 gi|94556614|gb|ABF46528.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
          Length = 216

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 22/173 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDG-WPSEKARSSSANADCVI----DSVRVFSNLKE 79
             N   + R      +     V P+ G  P+  A S SA+    +    D+V     L+ 
Sbjct: 30  PHNFSAILRTCDAVGVLTAHAVPPKSGVLPTFDATSGSAHKWVAVQRQPDAVTAVRQLQA 89

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A   +  + AT    R+       P              +   ++ G E+WG+++E   +
Sbjct: 90  A--GMQ-VLATHLSQRSLD--YREPDYT-----------RPTCVLLGAEKWGVSDEAAEI 133

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
           ++A I  P+  +  SLN+S A   +++E     + +   +  +   PA    L
Sbjct: 134 ADANIVIPMFGMVQSLNVSVAAATILFEAQRQRLSAGMYDTPQL-APAELDRL 185


>gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 269

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 25/168 (14%)

Query: 17  IILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+LV   P+   NIG + R     N+  + + NP+    +     +S      +      
Sbjct: 118 ILLVAEAPEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPNIIRASVGCVFTVPIA--V 175

Query: 75  SNLKEAI-----ADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            +  E I      D + +  A +A      K             E  F+ +N  I+ G E
Sbjct: 176 GSTTEVIDYLKKKDFNIYCAALSA-----SKPYY----------EVPFAEKNTAIVVGTE 220

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GLT E +  S   I  P+  +  S+N+S A  ++++E  +  + + 
Sbjct: 221 DEGLTQEWLKNSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKKMRLTAK 268


>gi|325283202|ref|YP_004255743.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
 gi|324315011|gb|ADY26126.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
          Length = 260

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 27/173 (15%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L   A   +++L   +   N+G + R +         L+  R   P       ++   
Sbjct: 108 PTLPPQA--LLVVLHGLEKPGNVGAILRTVDGVG-ADGVLILGRGADPYSPNVIRASQGS 164

Query: 66  CV------IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                    D     + L+E       +  T    R  +++ L                 
Sbjct: 165 VFTVPLRQQDEAEALAWLEE--EGFTLVACTPDAPRTFWQADLT---------------G 207

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            V ++ G E  GL  E      + +S P+     SLN++ A  ++++E +   
Sbjct: 208 RVALLLGTEHEGLP-EHWRRHESAVSIPMRGQADSLNVATAAAVVLYEALRQR 259


>gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C300]
 gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C300]
          Length = 253

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 61/170 (35%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 99  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 158

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +      + + T                     ++    G  + +
Sbjct: 159 HVPIARVTNLSQTLDKLKDQGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 203

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 204 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 253


>gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 243

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLFQSKMTG-PMA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
           KT99]
 gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
           KT99]
          Length = 251

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 27/164 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVI------D 69
           IL       N+G   R      +    +V PRD     +      +  A  V+      +
Sbjct: 106 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGAAEVVPLFQVTN 163

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R   +L++    + +I                    A     +     ++ I  G E 
Sbjct: 164 LARTMKSLQD--KGI-WIVGAAG--------------EAEQDLYKADLKGSLAIAMGSED 206

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            GL        ++++S P+     SLN+S A  + ++E +   +
Sbjct: 207 KGLRRLTRESCDSLVSIPMTGSVSSLNVSVATGVCLFEAVRQRL 250


>gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
 gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
          Length = 241

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 12/161 (7%)

Query: 13  KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           K P+ + L + +   N+G + R      +  + +   R    +      S  A   +   
Sbjct: 89  KTPLFVMLDELEDPHNLGAILRTCDCVGVDGVIIGKHRGVKLTPTVAKVSTGAIDTVKVA 148

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V +NL + +  L          +  F  V            +      + ++ G E +G
Sbjct: 149 -VVTNLAQTLKGL---------KKEGFW-VAGADFDNSQDYRQASYDMPLVLVVGSEGFG 197

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++       +  +  P+     SLN S A  +++++     
Sbjct: 198 ISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLYQIYAQR 238


>gi|330469058|ref|YP_004406801.1| tRNA/rRNA methyltransferase SpoU [Verrucosispora maris AB-18-032]
 gi|328812029|gb|AEB46201.1| tRNA/rRNA methyltransferase (SpoU) [Verrucosispora maris AB-18-032]
          Length = 267

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 16/148 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83
           N+G + RA+    +    L++P    P   ++   S      +   ++  +      + D
Sbjct: 128 NLGAIFRAVAALGV-DAVLLSPSCADPLYRRSVRVSMGEVFAVPYAKLDPWPTALAQVRD 186

Query: 84  LHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             F + A T          L P + A              ++ G E  GLT   +A S+ 
Sbjct: 187 AGFTVLAMTPAPDAVPIQRLTPAQRA-----------RAALLLGAEGAGLTQAAMAASDV 235

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            +  P+     SLN++ A  +  WE   
Sbjct: 236 RVVIPMRRGVDSLNVAAATAVACWELGR 263


>gi|313123301|ref|YP_004033560.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279864|gb|ADQ60583.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 185

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71
           I+L +P++ +N G +AR     N  L    L+ P      +K    +      +     +
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFHLDDKHLKRAVLDYGGEV---EI 58

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRER 129
           R   +L+  +          A   +N +  L  K    A    +     ++   +FGRE 
Sbjct: 59  RRHDDLRAFL----------ATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRET 108

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
            GL    +   ++  +  P++    + N+S +  ++++E +        +          
Sbjct: 109 TGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168

Query: 189 KGE 191
           K +
Sbjct: 169 KDD 171


>gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella
           violacea DSS12]
 gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella
           violacea DSS12]
          Length = 251

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 60/175 (34%), Gaps = 27/175 (15%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANA 64
           +++N+    ++IL       N+G   R      +    +V PRD     +      +  A
Sbjct: 95  EVENTETPFLLILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGA 152

Query: 65  DCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             V+      +  R   +L++      +I                    A     +    
Sbjct: 153 AEVVPLFQVTNLARTMKSLQDK---GVWIVGAAG--------------EAEHNLYKADLK 195

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++ I  G E  GL        ++++S P+     SLN+S A  + ++E +   +
Sbjct: 196 GSLAIAMGAEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGVCLFEAVRQRL 250


>gi|257125465|ref|YP_003163579.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
 gi|257049404|gb|ACV38588.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
          Length = 157

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 39/170 (22%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L++P++  N G + R     N   T+L L+ P      +K    +         V++F
Sbjct: 7   IVLLNPEIHVNTGNIGRTCVLTN---TKLHLIKPLGFELDDKKIRRA--GLDYWKDVKLF 61

Query: 75  ----------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                      N++    +    +ATT   +                   +    N  I+
Sbjct: 62  VWENWEHFWRENIEN--GNAKIYFATTKTKQRYT---------------DVKFNDNDYIM 104

Query: 125 FGRERWGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           FG E  G+  E +     SN  I+ P+ PL  SLN+S AV ++++E +  
Sbjct: 105 FGPESRGIPEEILNRYKESN--ITIPMLPLGRSLNLSNAVAIVLFEALRQ 152


>gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna
           gm2251 2'-o-methyltransferase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 249

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 23/179 (12%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSA 62
           +L +  +GP ++LV        N+G   R           ++ P+D     +      ++
Sbjct: 87  ELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVAS 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E      ++  T               + A     R     
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA--------------DEAEQDLYRADFKG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            + ++ G E  G+        + ++S P+     SLN+S A  + ++E +    V   K
Sbjct: 191 PIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRSVVPAK 249


>gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
           6192]
 gi|306532807|gb|ADN02341.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
           6192]
          Length = 249

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 23/154 (14%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSSSANADCVIDSVRVFSNL 77
              N   V R+     L  + +V       P  G     AR  S +           S L
Sbjct: 48  HPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARWLSLHRYRDPRMA--VSRL 105

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +E   + + I ATT            P      ++E   +       FG E  GL++  +
Sbjct: 106 RE---EGYRIIATT--------PHRTP----TPVDEFDVTRGKCAFFFGGELPGLSDAVL 150

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++  ++ P+     SLNIS    +++   ++ 
Sbjct: 151 EAADEYLTIPMYGFVESLNISVTAGIVLHNVVQR 184


>gi|254460272|ref|ZP_05073688.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
 gi|206676861|gb|EDZ41348.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 157

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV P++  N G + R     NL +L L+ P      EK+   +         V +   
Sbjct: 8   IVLVTPEIPWNTGAIGRTCVALNL-ELILIKPLGFSLDEKSVRRA--GTDYWKHVNL--T 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +      ++    AR     + +   +E             +  ++FG E  GL    
Sbjct: 63  LYD-----DWVAFIEARKPTRDQ-LYFFEEHGAQSLYEPDYDPDGYLVFGCESAGLPKSL 116

Query: 137 IA-LSNAIISFPV-NPLFPSLNISQ-AVLLM 164
           +  L + +   P+ +    SLN++  A  ++
Sbjct: 117 LDGLEDRVFHLPMLSDKVRSLNLANVATAVI 147


>gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 248

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRV 73
           ++IL + Q   N G   R+  +  +  + +  P+D     +   +  +  A      + V
Sbjct: 99  ILILDNVQDPHNFGACIRSAHSAGIDFIII--PKDNSAPVNATVKKVACGAAEH-TKIVV 155

Query: 74  FSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +NL  AI  L     +I        ++  S+                  +V I+ G E 
Sbjct: 156 VTNLARAIEKLKQLGVWIIGLAGEANDSLYSMNLAD--------------SVAIVAGAEG 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+     A  + +   P+     SLN+S A  + ++E +   
Sbjct: 202 SGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 244


>gi|170733360|ref|YP_001765307.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
 gi|169816602|gb|ACA91185.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
          Length = 260

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P L        ++L   Q   N+G + R+     +       P   +  S K   S 
Sbjct: 103 PTHP-LPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSG 160

Query: 62  ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A  ++    +  +++ EA+A+                 V                   
Sbjct: 161 MGAHFLLS---IHEDVEAEALAE------------RLDVPVALTDSHGAQAVYDCDLSGP 205

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V  +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 206 VAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
 gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
          Length = 263

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L + +   N+G + R         + +   R    ++    +S  A   I  VRV +  
Sbjct: 117 VLDEIEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVTNLA 176

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +   T A    +++                     + ++ G E  G++ 
Sbjct: 177 RTMDELKKQGLWFAGTDAAAEGDYR--------------EADYNLPLCLVIGSEGKGISR 222

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + ++S P+     SLN S A  L+++E   
Sbjct: 223 LIKEKCDFLVSIPMKGRVTSLNASVAASLLMYEVFH 258


>gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter
           xylosoxidans C54]
          Length = 245

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 19/173 (10%)

Query: 7   QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           ++ +  +GP  ++IL       N+G   R      +    ++ PRD     +   +  + 
Sbjct: 87  EVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNSTVQRVAC 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A   +  + V +             A T R+ ++    ++   + A     RI + Q +
Sbjct: 145 GAADTVPYLMVTN------------LARTMRSLKDRGVWLVGTDDQATDSMHRIDARQPM 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             + G E  G+        + +++ P+     SLN+S A  + ++E +     
Sbjct: 193 AWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQRQA 245


>gi|319762190|ref|YP_004126127.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
           BC]
 gi|330825998|ref|YP_004389301.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
           K601]
 gi|317116751|gb|ADU99239.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           BC]
 gi|329311370|gb|AEB85785.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           K601]
          Length = 258

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 29/170 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L   A+ P ++L   Q   N+G + R+   F   Q+  +       S K   +  
Sbjct: 105 PAQQAL--DAQSPTVVLDRLQDAGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRAGM 162

Query: 63  NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +   R+   L   + D+      + AT++   +       P              
Sbjct: 163 GAHFAL---RLVEGLD--VQDIDRLRVPLLATSSHQGDWLHRAQLPW------------- 204

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
              G I G E  G++ +    ++  I    P      SLN+  A  + + 
Sbjct: 205 -PCGWIMGHEGQGVSPDLQRRASRHIRIVQPGGEE--SLNVGAAAAICLH 251


>gi|293374181|ref|ZP_06620512.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter
           sanguinis PC909]
 gi|325845359|ref|ZP_08168659.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1]
 gi|292647210|gb|EFF65189.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter
           sanguinis PC909]
 gi|325488613|gb|EGC91022.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1]
          Length = 173

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 23/165 (13%)

Query: 16  VIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSV 71
            I LV  +P++ +N G + R     ++ +L L+ P      EK+   +  A+ V  +D V
Sbjct: 2   AIHLVQFNPEIPQNTGNIMRTCAATDI-KLHLIKPMGFTLDEKSIKRA-GANYVNEVDYV 59

Query: 72  RVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            V+ N  E +       F + T    R   K+      +           ++  I+ G E
Sbjct: 60  -VYENWDEFVEKNKGGKFCFCT----RYGQKNHTEMDFSNPE--------EDYYIVLGAE 106

Query: 129 RWGLTNEEIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+  E +          P+     SLN+S    ++ +E +   
Sbjct: 107 SCGIPKEILRPYFENCFRIPMTNKVRSLNVSNVAAILAYEALRQQ 151


>gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
           TW07627]
 gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
           TW07627]
          Length = 243

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 15/157 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       N+G   R+     +  + +   R    +  AR  +  A   +  +RV +  
Sbjct: 99  ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATARKVACGAAESVPLIRVTN-- 156

Query: 78  KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      A T R     N   V    EA   L +   +G  + ++ G E  G+   
Sbjct: 157 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALVMGAEGEGMRRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + +IS P+     SLN+S A  + ++E +   
Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|147771037|emb|CAN62490.1| hypothetical protein VITISV_035537 [Vitis vinifera]
          Length = 205

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 53/183 (28%), Gaps = 56/183 (30%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV PQ+  N G +AR                         +S+     + +  +    
Sbjct: 66  VVLVSPQIPGNTGTIARTCA----------------------ASAVGLHLIEEGEK---- 99

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                     + A T   R               L            IFG E  GL  E 
Sbjct: 100 ---------RLLAFT--KRGTNIHSDFSYRKGDWL------------IFGSETCGLPPEA 136

Query: 137 IALS------NAIISFPVNPLF-PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           +            I  P+   +   LN+S +V + ++E          +   + +T ++K
Sbjct: 137 LLDCKSEALGGGTIQIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPSTDSSK 196

Query: 190 GEL 192
             L
Sbjct: 197 SFL 199


>gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
           F0359]
 gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
           F0359]
          Length = 271

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 25/173 (14%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62
           P++ N    P++ L   Q   N+G + R  A  N     L   +P      + K   S+ 
Sbjct: 112 PEVANER--PILYLEAIQDPGNLGTILRTAAAANVGAVFL---SPDCVDLYNGKTVRSAM 166

Query: 63  NA---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A     V+ +V    +L+   A                + +      A  L  ++   Q
Sbjct: 167 GAIFKVPVVQNV----SLERISAFCD----------EKKRILTGTLLGANKLYTQVDWRQ 212

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              I FG E  GL+          ++ P+     SLN++ +V +++++  E +
Sbjct: 213 PTVIAFGNEGNGLSQACAEACRQALTIPMKSHTESLNLATSVAVVLYKAWEEA 265


>gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 275

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 15/160 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
                V++L   +   N G V R+        +   +      + K   +SA +   +  
Sbjct: 112 DRPRLVVVLSHVRDPGNAGTVLRSADAAGADAVIFTDASVDPYNGKCVRASAGSLFHLP- 170

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----NVGIIFG 126
           V V   ++E           T   R+   ++LA         +           V  IFG
Sbjct: 171 VVVGVRIEEV----------TGFLRDAGLTLLAADGQGKRTLDEAADAGMLTGPVAWIFG 220

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E WGL  E +AL++  +S P+     SLN++ A  + ++
Sbjct: 221 NEAWGLPQETLALADETVSVPIYGRAESLNLATAAAVCLY 260


>gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
           equigenitalis MCE9]
 gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
           equigenitalis MCE9]
          Length = 245

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 23/173 (13%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
            + +    P +  IL       N+G   R      +    ++ P+D     +   +  + 
Sbjct: 87  DVLDVINEPALLLILDGVTDPHNLGACLRTADAAGVH--AVIAPKDRSVGLNSTVQRVAC 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+       +I  TT              +A       I +  
Sbjct: 145 GAADTVPYIMVTNLARTLRSLKERGIWIIGTT--------------DATEKSVYDIDAKL 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 191 PTAWVMGAEGDGMRRLTSESCDQLVRIPMLGSVESLNVSVASAVCLYESLRQR 243


>gi|295402439|ref|ZP_06812392.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112708|ref|YP_003991024.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
 gi|294975530|gb|EFG51155.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217809|gb|ADP76413.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 25/203 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N   V R    F +  + +V  R  +      +   +AD  + ++R   ++  AI DL
Sbjct: 59  PHNQAAVLRTAEAFGVQDVYVVAGRAPFQPNPLVTR--HADKWL-TLRQQPDIVTAIQDL 115

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  A+    + S L   E  I L + I   Q   ++FG E  G++ E I +++A  
Sbjct: 116 Q------AKGYRVYASYLG--EGTIRLCD-IDVSQPTALLFGNEHSGVSQEAIRVADATF 166

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLE-ISL 203
             P+     S NIS A  L +++  E +   +      +    +  E     +     +L
Sbjct: 167 MIPMYGFVQSFNISVAAALALYDVTERARRQAG-----ERYYLSFQEKKELYEKWMWQTL 221

Query: 204 EERGYFRPVEKKKKMLDDLYSIF 226
                      +++M   L   F
Sbjct: 222 -------NPRTRERMKARLGRSF 237


>gi|297588471|ref|ZP_06947114.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297573844|gb|EFH92565.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 155

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 32/166 (19%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           I+L++P+   N G + R     N   ++L LV P      +K    S       D V   
Sbjct: 4   IVLLEPEKPSNTGNIGRTCVLTN---SRLHLVRPFSFRLDDKLLKRS--GMDYWDKVDLV 58

Query: 73  VFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +  ++ E +      D  F   T A N  +                          +FG+
Sbjct: 59  IHDDMDEFLEYIKGNDRVFYVETFATNYYHELEYQD----------------GDFFVFGK 102

Query: 128 ERWGLTNEEIA-LSNAIISFPVN-PLFPSLNISQAVLLMVWECMEN 171
           E  G+  + +    +  I  P+N  +  SLN++ +  ++++E +  
Sbjct: 103 ESSGIDKDLVDKHKDHSIKIPMNMTIDRSLNLANSCNIVLFEALRQ 148


>gi|332827813|gb|EGK00548.1| hypothetical protein HMPREF9455_03191 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 263

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            LQ S    +IIL   +   N+G + R         + + +P     +  A  SS     
Sbjct: 108 DLQLSENPFIIILEAVEKPGNLGAILRTADAAQADAVIICDPATDLYNPNAIRSSVGCLF 167

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            + +  V S+ ++A+  L          R+      A +  A    +         I+ G
Sbjct: 168 TVKTA-VCSS-RDALDFL----------RHKKIKSFAAELQASQWYQDTDFSIPSAIVMG 215

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GLT+  +  ++A I  P+     SLN+S +  ++ +E M   
Sbjct: 216 TEADGLTDFWLTNADARIKIPMRGKIDSLNVSVSTAVLTFEAMRQR 261


>gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L]
 gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L]
          Length = 259

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNL-KE 79
           Q   N+G + R         L L +      + K   +S      +          L  +
Sbjct: 120 QDPGNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASVGQWFRLPMAVTPHLPTLVAQ 179

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A A    + AT                 A V    I       I+ G E  GL  + +  
Sbjct: 180 AQAQGIQVVAT--------------VPDAKVSYWDIDWRCPSLILLGNEAAGLREDLVKT 225

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  ++ P+ P   SLN++ A  LM++E     
Sbjct: 226 ADQQVNIPLMPGVESLNVAIAAALMLYEAKRQR 258


>gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 280

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 33/169 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65
           I L   +   N+G + R +       + L+       S +   ++  +            
Sbjct: 128 IALDRVRDPGNLGTIIRTVDAAGAKGIILIGETTDPFSPETVRATMGSIFSVPLYRCNES 187

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++    F            I  T  +   +++++              F    + ++ 
Sbjct: 188 TFLNWSTHFK---------GIIVGTHLKGSVDYRTID-------------FKNGPIILLM 225

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           G E+ GL++  +   + +   P      SLN++ A  +M++E   + + 
Sbjct: 226 GNEQQGLSDVLVNHCHKLARIPQCGHADSLNLAVATAIMLYEIRRSYLT 274


>gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
           F62]
 gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
           F62]
          Length = 250

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCNLPD--------------ST 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249


>gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 277

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEA---IA 82
           N+G + R++         LV+PR   P   ++   S      +   R+     EA   + 
Sbjct: 132 NVGAIFRSVAGLG-ADAVLVSPRCADPLYRRSVRVSMGTVLQVPWTRI-PEWDEAAPLLR 189

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A  A             EA  +    +   + V ++ G E  GL+  E+A ++ 
Sbjct: 190 DAGFEIAALA----------LADEAVALDEYAVAPPERVAMVLGSEGDGLSRRELAAADR 239

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +++ P+     SLN++ A  + +W     S
Sbjct: 240 VVAIPMLHGVDSLNVASASAVALWALRVRS 269


>gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 268

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 16/150 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R         L L++      S +A  ++  A     I + R    L     
Sbjct: 129 PGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWEDFLVWLRQ 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               +  T+ R     +    P+                 ++ G E  GL +      + 
Sbjct: 189 GEGDLIGTSLRA---TQDYQEPRYQTP-----------SFVLVGNEAQGLPDSYEDACDH 234

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  P+     SLN++ A  +M +E +   
Sbjct: 235 LVKIPMMGRADSLNVAVAGAIMAYEVLNQQ 264


>gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
           25996]
 gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
           25996]
          Length = 249

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYHCDLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +E
Sbjct: 193 AWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKAE 248


>gi|119357220|ref|YP_911864.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
 gi|119354569|gb|ABL65440.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
          Length = 180

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 9/144 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R      + ++ L       P ++   ++  A   +       +  EAIA    
Sbjct: 40  NVGAMFRTADAAGIEKIILTGYTAAPPRKEIDKTALGAQETVRW-EYCESALEAIA---- 94

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
               T + R      L   E +        +   + +I G E  G+ +E +   + +I  
Sbjct: 95  ----TLKARGVKICALEIAEPSRPYTAMRKTDFPLCLIVGNEVDGIGDELLRECDEVIEI 150

Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
           P      SLN++ A  + ++E + 
Sbjct: 151 PQYGAKHSLNVAVAAGVSLFEFIR 174


>gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 243

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AENVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLFQSKMTG-PMA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 268

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 11/155 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++++       NIG + R+     +  + L        + +A   S  +  +I      +
Sbjct: 125 IVVIHGVTDTTNIGAIFRSAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLIPWTWADA 184

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+  L F  A  A + ++   +  P          +     + ++ G E  GL + 
Sbjct: 185 PLA-ALRRLGFRTAALALSDDSV-PLDTP---------ALKQEPRLALVMGTEGDGLPHA 233

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            IA ++  +  P+     SLN++ A  +  WE   
Sbjct: 234 TIAEADYTVRIPMAHGVDSLNVAAASAVAFWELRR 268


>gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
           DSM 43833]
 gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
           DSM 43833]
          Length = 322

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G +AR+   F    + +       PS ++   ++ A     S   
Sbjct: 168 PLIVALDGVTDPRNLGAIARSAAAFGAHGIVV-------PSRRSVGVTSGAWKT--SAGT 218

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + L  A A  +      A  +     V    +A   + +     + + ++ G E  GL+
Sbjct: 219 LATLPVARA-SNLTQTLKAYRKEGLFVVGLDGDAKEEIADNTLLTEPLVLVVGSEGKGLS 277

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +   P+     SLN   A  + ++E     
Sbjct: 278 RLVRETCDMLARIPMGERVESLNAGVAAGIALYEIARRR 316


>gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 361

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 14/148 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    L+       S  A  ++   A+ V        ++ +AI  
Sbjct: 224 PHNLGAMMRSCAHFGVKG-VLLQDAALLESGAAIRTAEGGAEHV--QPITGDSVLDAIEQ 280

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      R    S++     A     +    + + ++ G+ER GL++  ++ ++  
Sbjct: 281 F----------RKAGYSIVTTSSHAGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLS 330

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        SLN+S A  +++ E    
Sbjct: 331 VSIDGTGNVESLNVSVATGVLLAEWWRQ 358


>gi|226355084|ref|YP_002784824.1| tRNA/rRNA methyltransferase yibK [Deinococcus deserti VCD115]
 gi|226317074|gb|ACO45070.1| putative tRNA/rRNA methyltransferase yibK [Deinococcus deserti
           VCD115]
          Length = 148

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 29/162 (17%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76
           +L +P+   N+G VAR        +L L+ P      ++    +      ++ V +  + 
Sbjct: 4   VLFEPEKAGNVGNVARTCSVLG-AELHLIRPFGFRLHDREFRRAV--MDYLEGVTLHEHA 60

Query: 77  ----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                + ++     ++A +                A  L  +    Q   ++FG E  GL
Sbjct: 61  SWTAFQASLPAGARVFAFST--------------HATELYTQAGFQQGDYLLFGPESRGL 106

Query: 133 T---NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                + +      +  P      SLN++ A  +  +E    
Sbjct: 107 PAWLRDALPK----LKLPQPGGGRSLNLAVAAGVAAFEAGRQ 144


>gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           JDR-2]
 gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           JDR-2]
          Length = 251

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 17/158 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R      +  + +   R    +     +SA A   +   RV +  
Sbjct: 105 ILDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVLKTSAGAAEHVPVARVTNLA 164

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +     +  ++  T                +A     +      + I+ G E  G+  
Sbjct: 165 QTIDRLKEEGVWVAGT--------------DVSAPQDVYKTKFDLPLAIVIGNEGKGMGR 210

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + ++  P++    SLN S A  ++++E +   
Sbjct: 211 LIKEKCDFLVKLPMHGRLNSLNASVAAGVLMYEVVRQR 248


>gi|325111023|ref|YP_004272091.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
 gi|324971291|gb|ADY62069.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
          Length = 278

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +    +G  + L   Q   N+G + R+   F +  +          +     ++A    
Sbjct: 125 PVPEGRQGIWLALDSLQDPHNVGAIFRSASFFGVMGIIATKNSSAPINATVYDTAAGGVE 184

Query: 67  VIDSVRVFSNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            I    V +NL  A+     +      T+              E A      +   +   
Sbjct: 185 DIPFA-VETNLNRALKLSRRVGLWNLGTS--------------EHAEKSVWEVDQKRPWM 229

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I+ G E+ GL    +   + I   P      SLN+S A  +++     +
Sbjct: 230 IVVGNEQKGLRRLVLEHCDQICQVPPLGETSSLNVSVAAGILLAALRRS 278


>gi|256820355|ref|YP_003141634.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256581938|gb|ACU93073.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 220

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIA 82
            N   V R    F + Q   +  R G   +   +    A   +D  R       +    A
Sbjct: 43  HNTSAVVRTCEVFGVQQAHSIEGRFGKRLDAKIAM--GAQKWVDVFRYNDTQSCIDALRA 100

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I ATT            P + A  LN+   S +     FG E+ GL+ + ++ ++ 
Sbjct: 101 QGYQIVATT------------PHKDAYFLNDFDIS-KKSAFFFGTEKEGLSEQVLSQADT 147

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
            +  P+     SLNIS AV +++
Sbjct: 148 YLKIPMVGFTESLNISVAVAIVL 170


>gi|227514833|ref|ZP_03944882.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC
           14931]
 gi|227086823|gb|EEI22135.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC
           14931]
          Length = 168

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 25/173 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P    N G +AR          L L+ P      +K    +       D V+V  
Sbjct: 5   IVLFEPLFPANTGNIARTCA--GTDTVLHLIKPLGFSTDDKHMKRA--GLDYWDKVKVVY 60

Query: 75  -SNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +L   +  +   H   A+    R+  +                    +   +FG+E  
Sbjct: 61  HDDLVAFLDSIDLDHLYIASKFAERDYSEVDYTI-------------AGDHYFLFGKETT 107

Query: 131 GLTNEEIALS-NAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           GL    +       I  P +     +LN+S    ++++E +      +   V 
Sbjct: 108 GLPEGFMRRYPEKAIRIPQDDNNIRALNLSNTAAIVIYEALRQQGFPNLARVH 160


>gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 287

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 33/181 (18%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------- 64
           A+   + L   +   N+G + R         + L+       S +   ++  +       
Sbjct: 128 AEDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRATMGSIFSVPLY 187

Query: 65  ----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                  ++    F            I  T  +   +++++              F    
Sbjct: 188 RFDESAFLNWSTHFK---------GMIVGTHLKGSIDYRTID-------------FKNGP 225

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           V ++ G E+ GL +      + +   P +    SLN++ A  +M++E   + +    +  
Sbjct: 226 VILLMGNEKQGLPDILANCCDKLARIPQSGRADSLNLAVATAIMLYEIRRSYLTLEPRKA 285

Query: 181 K 181
            
Sbjct: 286 A 286


>gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 266

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 12/153 (7%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V      N G + R         +            K   +SA +   I   R   N+K+
Sbjct: 124 VLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVAR-DPNIKD 182

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            +           + R++   VLA      V        Q    +FG E  GL  E +  
Sbjct: 183 VL----------GKLRSSGMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDE 231

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  +  P+     SLN++ A  + ++E ++  
Sbjct: 232 ADMRVRIPILGRAESLNLATAASICLYESVKQQ 264


>gi|113475890|ref|YP_721951.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110166938|gb|ABG51478.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 234

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 26/183 (14%)

Query: 1   MTPYAPQ-----LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           +TP   +     LQ   +   +IL D     N   V R+  +F +  + +V  ++ +   
Sbjct: 17  ITPARREKILSVLQQRTRDITVILEDIYQPHNASAVLRSCDSFGVQDVHIVENKNIFTIT 76

Query: 56  KARSSSANADCVID----SVRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAA 108
           ++ +    +D  +     + +  +N +E +  L    ++ A T      +K  +      
Sbjct: 77  QSVTI--GSDRWLTLYRYNEQSINNTEECLKRLKNEGYVIAAT----TPYKEHIT----- 125

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
               E +     V ++FG E  GL+      ++  +  P+     S NIS +  L ++  
Sbjct: 126 ---IEELSVNTKVALMFGSEINGLSEYAKNNADVSVKIPMVGFSESFNISVSAALCLYNL 182

Query: 169 MEN 171
           M  
Sbjct: 183 MSR 185


>gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter
           turicensis z3032]
 gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter
           turicensis z3032]
          Length = 243

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  +   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLFQSKMTG-PLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638]
 gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 244

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L      P   IL       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PDLIAQLDNPFFLILDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRAAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  +RV +    +++   +  +I  T                 A     +     
Sbjct: 144 GAAENVPLIRVTNLARTMRQLQEENIWIVGTAG--------------EADHTVYQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 190 RLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 277

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 16/176 (9%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P   ++ + A+    +L +     N+G + R+     +    L+ P    P   ++   S
Sbjct: 111 PSVREVCSGARRIA-VLENVMNPTNVGAIFRSAAALGM-DAVLLTPDCSNPLYRRSIRVS 168

Query: 62  ANAD----CVIDSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                       + +   +    +  L    + T A        +     +  V ++R+ 
Sbjct: 169 MGTVFQIPWTWLTAKETQHFPSYVRFLKSLCFGTAA--------MALTDSSIPVSDQRLA 220

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + + +I G E  GL+   +A  +  +  P+     SLN++ A  +  WE    S
Sbjct: 221 GEEKLAVILGSEGDGLSAATLADCDYTVRIPMAHGVDSLNVAAASAVAFWELCRCS 276


>gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
 gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
          Length = 265

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 12/150 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R+        L L +      +    ++S      +         + A  
Sbjct: 126 EKPGNLGTIIRSADGTGADGLILCDKCTDLFNPNVITASTGMCFSLPIA------EAASQ 179

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D      T    + N  ++L+    A  L   +     + +I G E++GL+ E +  S+ 
Sbjct: 180 D------TINYLKENNITILSATPHADKLYTDVDMTGPIAVIVGAEQYGLSEEWMKQSSI 233

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  P+     SLN++ A  L+++E +   
Sbjct: 234 NVKIPMLGKADSLNVATATTLLLYEAVRQR 263


>gi|149179294|ref|ZP_01857856.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797]
 gi|148841868|gb|EDL56269.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797]
          Length = 158

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           ++L  P + +N G + R        +L LV P       K    +          +    
Sbjct: 11  VVLYQPDIPQNTGNIGRTCVAVG-AKLWLVRPLGFQLDAKHLRRA--GMDYWQHLNWEAV 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E  + L         +R  +K  L       V +  +  GQ    +FG E  GL  
Sbjct: 68  DSLAEVQSQLQ--------DRTWWK--LTKFATRYVWDAELEPGQ--VFLFGSESNGLPP 115

Query: 135 EEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +    ++ +  P++    SLN++     +++E +  
Sbjct: 116 RILEEDPDSNLKLPMHQEVRSLNLASTATAVMYEAVRQ 153


>gi|294142851|ref|YP_003558829.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
           DSS12]
 gi|32562924|dbj|BAC79237.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea]
 gi|293329320|dbj|BAJ04051.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
           DSS12]
          Length = 232

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 18/162 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83
           NI  V R      + Q+  V     WP  + R    +++ +   + +++ +  + +A+  
Sbjct: 32  NIAAVIRTADAVGIHQVHAV-----WPDIEMRVSGNTASGSQQWVKTIKHYH-MDDAVQA 85

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                    R ++           A+   E I   +   II G E  G++ E IA ++  
Sbjct: 86  F--------RAQDMQILATNFSADAVDFRE-IDYTRPTVIILGNEHDGVSPEGIAAADQH 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           I  P+  +  SLN+S A  L+++E      V+     ++ + 
Sbjct: 137 IIIPMIGMVQSLNVSVASALIMYEAQRQRQVAGMYGTRKLDD 178


>gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761703|ref|ZP_04759790.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374011|gb|EER63544.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 268

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 16/150 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R         L L++      S +A  ++  A     I + R    L     
Sbjct: 129 PGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATARWEDFLVWLRQ 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               +  T+ R     +    P+                 ++ G E  GL +      + 
Sbjct: 189 GEGDLIGTSLRA---TQDYQEPRYQTP-----------SFVLVGNEAQGLPDSYEDACDH 234

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  P+     SLN++ A  +M +E +   
Sbjct: 235 LVKIPMMGRADSLNVAVAGAIMAYEVLNQQ 264


>gi|313207195|ref|YP_004046372.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312446511|gb|ADQ82866.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315022402|gb|EFT35429.1| 23S rRNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325335365|gb|ADZ11639.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 161

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 60/153 (39%), Gaps = 11/153 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   +IL   Q  ENIG++ R      + ++ +++      S + + ++ +A+  + ++ 
Sbjct: 15  KEISLILEHLQSPENIGLILRTAEAMGVQKVVILSDNFRQLSPRIKRTTRSAENNL-NII 73

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++ +EAI               N       K    V            I+ G E+ G+
Sbjct: 74  FVNSWEEAINHF----------EKNTHFYALEKTNKSVDYTTFEYHFPCVIVCGNEKDGV 123

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           +N+ +      +   +     SLN++ A  +++
Sbjct: 124 SNKALEKCTNHLHINMYGKNTSLNVAIATGILL 156


>gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Thiomonas sp. 3As]
          Length = 242

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV---FSNLKE 79
             N+G + R      +  L +  P+D     +      ++ A   +  + V     +L E
Sbjct: 104 PHNLGAILRTADAAGVH-LVI-APKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGE 161

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++  T               EAA          Q   ++ G E  G+       
Sbjct: 162 LQDRGLWVMGT--------------DEAATDDVYAANWTQPAVLVMGAEGAGMRRLVRET 207

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++  P+     SLN+S A  + ++E +   
Sbjct: 208 CDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240


>gi|328950244|ref|YP_004367579.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450568|gb|AEB11469.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 263

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 29/178 (16%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L      PV++ V+P+   N+G + R                    +      + 
Sbjct: 104 PRLEALDPPPHAPVLVAVNPEKPGNLGAILR----------------SADAAGAGAVVAV 147

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARN--------RNNFKSVLAPKEAAIVLNER 114
               +++   + S+       + F   T A +        R   + ++A    A      
Sbjct: 148 GGVDLMNPNVIRSST-----GVVFTLPTAAASSEAALDWVRARGRRLVAASPHAETSYWE 202

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +     V I  G E  GL  E +  ++  +  P+     SLN+S +  L+++E +   
Sbjct: 203 VDLTGAVAIAVGPEHAGLPPEWLEAADVRVRIPMCGRADSLNVSVSAALLLYEALRQR 260


>gi|193212564|ref|YP_001998517.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
           8327]
 gi|193086041|gb|ACF11317.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
           8327]
          Length = 221

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 15/189 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R+     + Q+  ++ R    +++   ++A A      V+V       ++D 
Sbjct: 31  PHNLAAIIRSCDAVGIHQVHAISRRSSIRTKQ--HTAAGASR---WVKV------GLSDS 79

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   R       V   +  A+     I   +   I+ G E  G + E + L++  +
Sbjct: 80  IVPVGEKIREAGMQILVATYRPDAVDFR-SIDYTRPTAIVMGEELTGPSEEAMNLADHFV 138

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL--LSFLDYLEIS 202
             P+  +  SLN+S A  L+++E       +   + +  +  A    L        L   
Sbjct: 139 YIPMFGMVESLNVSVAAALILFEAQRQRKAADLYDSRHFSD-AEFERLLFEYAYPRLSAV 197

Query: 203 LEERGYFRP 211
           L E+G   P
Sbjct: 198 LREQGKPYP 206


>gi|302335827|ref|YP_003801034.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
 gi|301319667|gb|ADK68154.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
          Length = 277

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+     +  L L  P    P + +A  +S      +          +A  D  
Sbjct: 137 NVGALFRSAAALGVDALLL-APTCADPFNRRAIRTSMGTVFQLPWAPAPRPWPQATFD-- 193

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  R        LA  E A+ L++  +     V + FG E  GL+++ ++  +   
Sbjct: 194 -----ALRADGFTSVALALDECAVRLDDPALADSGRVALFFGSEGTGLSDDVLSAVDRSA 248

Query: 145 SFPVNPLFPSLNISQAVLLMVWEC 168
             P++    SLN++ +  +  WE 
Sbjct: 249 IIPMSRGVDSLNVAASSAVAFWEL 272


>gi|260434472|ref|ZP_05788442.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH
           8109]
 gi|260412346|gb|EEX05642.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH
           8109]
          Length = 163

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 38/172 (22%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I L +PQ+  N G +AR    F +  L L+ P      +++   +         V
Sbjct: 4   IAPLRIALFEPQIPPNTGNIARTSAAFRVP-LTLIEPLGFKVDDRSVRRA--GLDYWPHV 60

Query: 72  R--VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------- 122
           +  + SN  E                  F++ L P++  I  + R  S  +         
Sbjct: 61  QLSITSNFAE------------------FQAELRPEQRLIGCSRRGGSSLSSFTFQRGDV 102

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPL--------FPSLNISQAVLLMVW 166
           ++FGRE  GL        ++I++ P+             SLN+S A  L+ +
Sbjct: 103 LLFGREDTGLPEPVREACDSILTIPMPGAADDAGQGGVRSLNLSVACALVTY 154


>gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  +   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRLLQEENVWIVGTAGEADHTLYQSKMTG-PLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
 gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118]
          Length = 256

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70
           +  +++L       N+G   R      +    ++ P+D      A  +  ++ A   +  
Sbjct: 106 EALILVLDGVTDPHNLGACLRVADGAGVH--AVIAPKDHAAGINATVAKVASGAAETVPY 163

Query: 71  VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             V +    L E      +I  T+              + A     +      V ++ G 
Sbjct: 164 FMVTNLARTLNELKERNIWIIGTS--------------DVAPKTIYQADLKGPVALVLGA 209

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E  G+        + ++S P+     SLN+S A  + ++E +   +
Sbjct: 210 EGDGMRALTAKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQRM 255


>gi|16126553|ref|NP_421117.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221235335|ref|YP_002517772.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|13423835|gb|AAK24285.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220964508|gb|ACL95864.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 268

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 12/159 (7%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A+  V++L      +N+G + R    F    + L          KA   S  A   + +
Sbjct: 118 PARAMVLVLCGIANHDNMGGIYRNAAAFGADAIVLDADCCDPLYRKAIRVSVGAVLSVPT 177

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            R+  +  E+IAD   + AT           L+P  +A  +   +       ++ G E  
Sbjct: 178 ARL--SRDESIAD--LLDAT-----GFEGLALSP--SADEILATLKPAARTAVLLGTEGP 226

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           GL+ + +A +  I   P+   F SLN++    +++    
Sbjct: 227 GLSPDVMARARRI-GIPMANSFDSLNVATTSGIVLHHLR 264


>gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 249

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 19/173 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L ++A G  ++LV    Q   N+G   R+     +T + +   +    +   R +S+ A
Sbjct: 90  DLVDAAGGQALLLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGA 149

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +   +L+E      +IY        +          A+ L         V
Sbjct: 150 ADRLPVIAVVNLARSLRELQKQDVWIYGLEGEAETSL--------YALDLR------GKV 195

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            ++ G E  GL        + +   P+     SLN+S A  + ++E +    +
Sbjct: 196 ALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFEAVRQRTL 248


>gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
           K12]
 gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
           K12]
          Length = 242

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV---FSNLKE 79
             N+G + R      +  L +  P+D     +      ++ A   +  + V     +L E
Sbjct: 104 PHNLGAILRTADAAGVH-LVI-APKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGE 161

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++  T               EAA          Q   ++ G E  G+       
Sbjct: 162 LQDRGLWVMGT--------------DEAATDDVYAAKWTQPAVLVMGAEGAGMRRLVRET 207

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++  P+     SLN+S A  + ++E +   
Sbjct: 208 CDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240


>gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3]
 gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3]
          Length = 286

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L   +   N+G + R       + + LV       S +   ++  +       R  ++
Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVAR--AS 192

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++E +     A++  + AT      +++ +               +G+ V ++ G E+ G
Sbjct: 193 VEEFLSWKKSANVS-VVATHLAGSVDYRKIDY-------------AGKPVVLLMGNEQSG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  E    ++ +   P      SLN++ A  +M++E   + +  + 
Sbjct: 239 LPPELAGRADQLARIPQQGRADSLNLAIATAVMLFEARRHLLELAP 284


>gi|134102874|ref|YP_001108535.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915497|emb|CAM05610.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 234

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPS 54
           M P A  L++ A  P  +L+        N+GM+ R      +  + +    V   D    
Sbjct: 70  MRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVI 129

Query: 55  EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           + +   + +A  +    +   +  E + +  +              + A +  A      
Sbjct: 130 KASAGVAFHAPVL--RAQTAGHAAELLTEAGY-------------PLYALEAGAQESIYE 174

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              G     + G E  GL+ +        ++ P+     SLN++ A  ++ +E +  +
Sbjct: 175 ADFGSRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRT 232


>gi|67923985|ref|ZP_00517438.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67854160|gb|EAM49466.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 216

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 25/175 (14%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +L +      N+  + R      +  +  +N  D +P+    S  +        +    +
Sbjct: 24  VLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTDEFPT---FSQVSQGSDKWTFLHTHPD 80

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERW 130
           +K AI        T  +++            A    E+          Q   I+ G E+W
Sbjct: 81  IKTAI--------TYLKSKKINI-------YAAHFTEKSLDYRDIDYTQPTAILLGAEKW 125

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           G++ E   L +  I  P+  +  SLN+S A  ++++E     +     +    + 
Sbjct: 126 GVSEEAANLVDGNIIIPMLGMVQSLNVSVAAAVILFEAQRQRLAGKMYDTSRLDP 180


>gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 292

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+    N+    LV PR   P   ++   S      +   R    L+   ADL 
Sbjct: 155 NVGAIFRSAAALNV-DAVLVTPRCADPLYRRSIRVSMGTVFQVPWAR----LESWPADLQ 209

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                T        + LA +E ++ L E      + + +I G E  GL+   +A  +  +
Sbjct: 210 -----TLHELGFKSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTV 264

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
             P++    SLN++ A  +  WE    S
Sbjct: 265 MIPMSHGVDSLNVAAASAVAFWETRPRS 292


>gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
 gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
          Length = 269

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 23/167 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           PQL N   G  ++L   Q   N+G + R       + + L        SEK   SS  + 
Sbjct: 110 PQLLNGLHGKYVLLDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEKVVRSSMGS- 168

Query: 66  CVIDSVRVFSNLK-EAIADLHFI-----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            ++  + ++ +L  E + ++          T+     N++             + +  G 
Sbjct: 169 -IL-RLPIYHDLDIEFLKEIKSFSKVPFIGTSLSASQNYRH-----------AKFVTEG- 214

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               IFG E  G++ E + L++  +  P+     SLN+S    ++++
Sbjct: 215 --VFIFGNEGSGISPEILDLTDWNVFIPMAGTVESLNVSSTAAIILF 259


>gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
           K601]
 gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
           denitrificans K601]
          Length = 248

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64
           +    A   +++L       N+G   R           ++ P+D      A  +  ++ A
Sbjct: 93  EADGVANPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGISATVAKVASGA 150

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +    V +    L E      ++  T+                A     ++     V
Sbjct: 151 AETMPYFMVTNLARTLGELKERNIWVIGTSG--------------DADKTLYQVDLKGPV 196

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 197 ALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEALRQR 247


>gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
           piechaudii ATCC 43553]
 gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
           piechaudii ATCC 43553]
          Length = 245

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 19/173 (10%)

Query: 7   QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           ++ +  +GP  ++IL       N+G   R      +    ++ PRD     +   +  + 
Sbjct: 87  EVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNATVQRVAC 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A   +  + V +             A T R  ++    ++   + A     +I + Q +
Sbjct: 145 GAADTVPYLMVTN------------LARTMRGLKDRGVWLVGTDDQATDSMHKIDARQPM 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             + G E  G+        + +++ P+     SLN+S A  + ++E +     
Sbjct: 193 AWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQRQA 245


>gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 234

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 12/148 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G +AR+   FN   + +   R+   ++    +S  A   ++  +V +NL + I 
Sbjct: 99  EDPHNLGAIARSALFFNFDGIIIPKHREALVNDTVYKTSQGAVDNVNICQV-TNLSQTIE 157

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L          +  F  + A       + +  FSG  V II G E  G+++  I  S+ 
Sbjct: 158 KL---------KKAGFW-IYAALLEGDNIKDVDFSG-KVAIIIGNEGKGISDNLIKASDF 206

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            +  P    F SLN S A  ++++E + 
Sbjct: 207 KVKIPNLSEFDSLNASVAAGIIMYEVIR 234


>gi|221198307|ref|ZP_03571353.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
 gi|221208246|ref|ZP_03581250.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
 gi|221171894|gb|EEE04337.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
 gi|221182239|gb|EEE14640.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
          Length = 260

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 18/170 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           +P L        ++L   Q   N+G + R+     +       P   +  S K   +   
Sbjct: 104 SPPLPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRAGMG 162

Query: 64  ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A  ++    +  ++  EA+A         AR       V                 Q V 
Sbjct: 163 AHFLLS---IHEDVAPEALA---------AR---LDVPVALTDSHGAQAIYDCDLSQPVA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +FG E  G++     ++   ++ P      SLN++ A  + ++E +   
Sbjct: 208 WVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638]
 gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638]
          Length = 365

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    L+       S  A  ++   A+ V  I    V   ++E  
Sbjct: 228 PHNLGAMMRSCAHFGVKG-VLLQDAAIVESGAAIRTAEGGAEHVQPITGESVLDAIEEFR 286

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + I  T++           P+               + ++ G+ER GL++  ++ ++
Sbjct: 287 KAGYSIVTTSSHTGTPLFQATLPR--------------KMVLVLGQERDGLSDAALSTAD 332

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +S        SLN+S A  +++ E    
Sbjct: 333 LSVSIEGTGKVESLNVSVATGVLLAEWWRQ 362


>gi|120610518|ref|YP_970196.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120588982|gb|ABM32422.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 260

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 29/170 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P AP LQ     P ++L   Q   N+G + R+   F   Q+  +    G  S K   +  
Sbjct: 104 PEAPVLQAGL--PTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGM 161

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIY----ATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +    +   L  A+ D+  +     AT++   +       P              
Sbjct: 162 GAHFALH---LVEGL--AVDDIDALALPLLATSSHGGDLLHRARLPW------------- 203

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
              G I G E  G++      +  +I    P      SLN+  A  + + 
Sbjct: 204 -PCGWILGHEGQGVSEALQQRATHLIRIAQPGGEE--SLNVGAAAAICLH 250


>gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
 gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
          Length = 249

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 24/179 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P    S   P +++L       N+G   R+     +    +V P+D     +  A+  + 
Sbjct: 86  PDFLESTDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +   RV +    L+  + + + +I  T                 A     +    
Sbjct: 144 GAAESVPLFRVTNLARTLR-LLKEYNVWIVGTAG--------------EADHTLYQSKLT 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +      S 
Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQRAEKSA 247


>gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 263

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 10  NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA--- 64
            + + P+++L+       N+G + R+   F      +   R   P   A + +++ A   
Sbjct: 108 PADRPPLVVLLDRVTDPHNVGAILRSAEVFGAAA-VISTARSAAPETGALAKTASGALER 166

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +    +   ++E  A    +        +   + L           R  + + + ++
Sbjct: 167 QPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTIGTAL-----------RDLTDRPIALV 215

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            G E  GL ++     N ++  P    F SLN+S A  + ++ C 
Sbjct: 216 LGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260


>gi|317057706|ref|YP_004106173.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315449975|gb|ADU23539.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 271

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 11/154 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L + Q   N+G + R      L  + L        + K   S+  +   +D + V  + 
Sbjct: 127 VLDELQDPGNLGTMIRTSDAVGLDGIVLTGNCVDLYNPKTVRSAVGSMPRVD-IFVEKDF 185

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +  I               +  +  A       + +  FS +   ++ G E  GL ++  
Sbjct: 186 ERVIEAFRL---------KDIPTAAAVINGGTEIRQYDFS-KGCAVVIGNEGRGLMHDHA 235

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +  ++  ++    SLN + A  + +WE    
Sbjct: 236 EMCSHKVTIAMHGHIDSLNAATAATIFLWEMTRQ 269


>gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 269

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 24/160 (15%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P+   NIG + R     ++  + + NP+    +     SS      +          E I
Sbjct: 125 PEKPGNIGALLRTADAAHIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIAT--GTTAEVI 182

Query: 82  ADL------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             L       +  A TA      K               +   +   I+ G E  GLT+E
Sbjct: 183 DFLKAKNISSYCAALTA-----SKPYY-----------EVSFSEASAIVVGTEDQGLTDE 226

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +  S   I  P+  +  S+N+S A  ++++E     +++
Sbjct: 227 WLTHSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKRQRVMT 266


>gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           chlorophenolicus A6]
 gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           chlorophenolicus A6]
          Length = 329

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 28/168 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNF---NLTQLRLVNP--RDGWPSEKARSSSANADCVIDSV 71
           + L       N+G + R++  F         +V P  R    +  A  +SA A   +   
Sbjct: 181 VALDGITDPRNLGAIIRSVSAFSGHG----VIV-PERRSVGVTASAWKTSAGAAVRVPVA 235

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           R  SNL  A+        F+                  +  + L +   + + V I+ G 
Sbjct: 236 R-ASNLNSALKQFKNMGIFVLGLDG-------------DGDVSLPDLSLATEPVCIVVGS 281

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           E  GL+       + I+S P++    SLN S AV + ++E        
Sbjct: 282 EGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEVSRQRAAK 329


>gi|89889339|ref|ZP_01200850.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
 gi|89517612|gb|EAS20268.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
          Length = 242

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 34/172 (19%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLR-------LVNPRDGWPSEKARSSSAN 63
           +  G  + L D +   N+G + R    F++ Q+        + NP+    S      ++ 
Sbjct: 93  NLSGLTVALDDVKDPGNLGTIIRLCDWFDVKQIICSTETVDVFNPKCVQAS-----MASL 147

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               +D V    NL+E + D      TTA                + + E       + +
Sbjct: 148 GRVQVDYV----NLEEFLQDASSKIFTTA-------------MNGVSIYETNLPDHGI-L 189

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPS---LNISQAVLLMVWECMENS 172
           + G E  G++ E + L N I S P     PS   LN++ A  +++ E   ++
Sbjct: 190 VMGNESAGISEEIMKLGNKI-SIPQYGSQPSTESLNVAMATAVVLGEWRRST 240


>gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
 gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 281

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 17/149 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81
             N+G + R    F +    +V      P      A+S+S   + V        NL EA+
Sbjct: 144 PHNVGAIVRTAAAFGVAG--IVTTARHAPGATGVLAKSASGGLEHVP--FVTVRNLAEAL 199

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            +L          R   +  L     A    + +   + + I+ G E  GL        +
Sbjct: 200 IELG--------ERGFTRVGLDSD--APESLDALTVARPLVIVLGAEGKGLRERTRGCCD 249

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            +   P +    SLN+S A  + ++    
Sbjct: 250 VLARIPFSGAIRSLNVSNAAAITLYALGR 278


>gi|163802263|ref|ZP_02196158.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
 gi|159174068|gb|EDP58878.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
          Length = 227

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP +    +  SA A   ++ V    ++  AI+
Sbjct: 30  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLAHTSAGARNWVE-VDTHDSIDTAIS 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L        +++     V    + A+   + I   +   II G E+ G ++    L++ 
Sbjct: 84  EL--------KSQGMQVLVTNLSDTAVDFRD-IDYTKPTAIILGSEKVGASDRAKKLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +     +E   P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYQREESALP 178


>gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 254

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L D     N+G + R         + L N      + K + S   +   ++ ++  ++
Sbjct: 113 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK--AD 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AIA L       A +   + S+L P   A            V +I G E  G++ E 
Sbjct: 171 LPDAIASLK------AADIPVYASLLDP---AAKQLGDFVPVAQVALIIGNEAHGVSPEI 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AL++  +  P+     SLN + A  +M++
Sbjct: 222 EALADEKLYIPIKGRAESLNAAVAAGIMIY 251


>gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 322

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            + + +A+ P+I+ L       N+G V R+   F +T + +   R    +  A   SA A
Sbjct: 162 ERTKENAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVNAAAWKVSAGA 221

Query: 65  DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R   +   L E      F+                     + L +   +   +
Sbjct: 222 AARVPVARETNLVRALGELKEAGCFVVGLDGGGD-------------VSLRDLDLATGPL 268

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            ++ G E  GL+       + I+S P++    SLN + A  + ++E       +
Sbjct: 269 VVVTGAEGKGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVASKRAEA 322


>gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ]
 gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma
           phagocytophilum HZ]
          Length = 258

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 23/169 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSAN 63
           Q + +    +++L +     N+G V R    FN+  + L    +P +     KA   S+ 
Sbjct: 101 QTEAAPTSTILVLDEVTDVHNVGAVLRTAACFNVDAVVLTEHNSPSESCGMAKA---SSG 157

Query: 64  ADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A  ++  V +      L+      ++ Y   A        V                 + 
Sbjct: 158 AIDIVPVVCIGNLVKTLEYLKQKNYWCYGFDASGGTCLHQVEF--------------SER 203

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             +I G E  G+ +      + ++  P++    SLN+S A  + ++   
Sbjct: 204 RVVILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSNAAAIAMYSVF 252


>gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia
           proteamaculans 568]
 gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia
           proteamaculans 568]
          Length = 243

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S   P +++L       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PALLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  +RV +    L+       ++  T                 A     +     
Sbjct: 144 GAAENVPLIRVTNLARTLRLLQEMNVWVVGTAG--------------EADHTLFQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQR 242


>gi|332293222|ref|YP_004431831.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171308|gb|AEE20563.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 218

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+  +F + +L ++   +    ++  +    A   +D V+  S+ K  I +L 
Sbjct: 43  HNTSAVIRSCESFGVQELHVIEEVNVKRIDREIAM--GAQKWVD-VQRHSSAKHCIENL- 98

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                  R +       +P + A  L E     +   I FGRE  GL++  + +++  I 
Sbjct: 99  -------RKQGYKIVATSPHKDAHRL-EDFDITEKAAIFFGRETEGLSDTVLDMADDFIY 150

Query: 146 FPVNPLFPSLNISQAVLLMV 165
            P+     SLNIS +  + +
Sbjct: 151 IPMVGFTESLNISVSAAITL 170


>gi|300789967|ref|YP_003770258.1| rRNA methylase [Amycolatopsis mediterranei U32]
 gi|299799481|gb|ADJ49856.1| rRNA methylase [Amycolatopsis mediterranei U32]
          Length = 249

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 22/172 (12%)

Query: 3   PYAPQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P  P+   SA    P ++L +P+   NIG V R      L+ +      D W     R S
Sbjct: 94  PAWPESARSADRASPAVLLENPRNLGNIGAVIRVAAGLGLSSVYSTGTVDPWHPTVIRGS 153

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +      +        L              A        + +   A I L E +   Q+
Sbjct: 154 AG-----LHYALPVRRL--------------AGIHEAEGPIYSLDPAGIDLREAVIP-QD 193

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + FG ER G++ E    S+ ++S P+     S N++ +V +  +  + +S
Sbjct: 194 ALLAFGSERSGISPELRRHSDVLLSIPMRAEVSSYNLTTSVAMAAYHWVLSS 245


>gi|120435451|ref|YP_861137.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117577601|emb|CAL66070.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 217

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 12/140 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F +  + ++   +  P    +  +  A   +D  R  S     + +L 
Sbjct: 44  HNTSAVVRSCDVFGIQNIHVI--EEKIPRRIDKEIAMGAQKWVDINRYTSTTT-CLKNL- 99

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                    +  ++ V         L E         + FG E+ GL+ E +  ++A + 
Sbjct: 100 --------KKKGYRIVATSPHDDSQLLEDFDISTPAALFFGTEKDGLSEEVMREADATVK 151

Query: 146 FPVNPLFPSLNISQAVLLMV 165
            P+     SLNIS +  +++
Sbjct: 152 IPMVGFTESLNISVSAAIIL 171


>gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 244

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 12/160 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL       N+G + R         + +   R    +     +SA A   +   +V + 
Sbjct: 97  IILDGITDPHNLGSIIRTADAVGAHAVIIPKRRSVQITPIVAKASAGAVEYLPVCKVTN- 155

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                     I  T    + N   + A         ++   G  +G++ G E  G++   
Sbjct: 156 ----------IVNTIKTLKENGLWIAAVDMDGHTFYQQNL-GGPLGLVVGSEGEGISRLV 204

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               +  +S P++    SLN S A  ++++E       S 
Sbjct: 205 KQNCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQRNASK 244


>gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
 gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
 gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
 gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
          Length = 248

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 26/155 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRVFSNLKE 79
           Q   N+G + R+   F    + L +      +EK   S+  A     +++      NL+E
Sbjct: 113 QDPGNLGTLLRSAVAFGFDGVILGDGCVDLYNEKVIRSTQGAIFKLPILNQ-----NLEE 167

Query: 80  AIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           A+  L      IY T+     N + +   +E              +  I G E  G++ E
Sbjct: 168 AVTSLKEQGVRIYGTSL---QNGRPLNEIEETM-----------KMAFILGNEGSGVSKE 213

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++L++  I   ++    SLN+S A  ++++   +
Sbjct: 214 LLSLTDGNIFIEMSENIESLNVSIAGSIIMYRFRQ 248


>gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
 gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
          Length = 244

 Score = 58.9 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL       N+G + R         + +   R    +     +SA A   +   +V   
Sbjct: 97  IILDGITDPHNLGSIIRTADAVGAHGIIIPKRRSVHITPIVAKASAGAVEYVPVCKVTNI 156

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + +K+   +  +I A                +       +      + ++ G E  G++
Sbjct: 157 VNTIKQLKEEGLWIAA---------------VDMGGDAFYQTNLTGPLALVVGSEGEGIS 201

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  +  +S P++    SLN S A  ++++E         
Sbjct: 202 RLTKENCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQRNAKK 244


>gi|54020406|ref|YP_115752.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|53987579|gb|AAV27780.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|144575296|gb|AAZ53517.2| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|312601121|gb|ADQ90376.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 174

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++G N G + R+ +   L +L ++ P       K     A A  ++  +     
Sbjct: 4   IVLFQPEIGPNTGNIIRSCFVAGL-KLHIIMPIAFDLDPKHLKRPA-AGILLSEIEHEIH 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + N  E     +  + T    R   K         +     I + +++  +FGRE  G
Sbjct: 62  KNWQNFSEKYGQKNLFFIT----RYGQKLY-----TEVDFYTEIETKKDIFFVFGRESTG 112

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +          +  P+     SLN++  V+++ +E    
Sbjct: 113 IPIEILKKNKEKC---LRIPMIAKARSLNLANTVVIIAYEFHRQ 153


>gi|295133953|ref|YP_003584629.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294981968|gb|ADF52433.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 217

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 23/168 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F +  + ++   + +P    R  +  A   + SV   ++ KE I+ + 
Sbjct: 44  HNTSAVIRSCDVFGIQNIHVI--EEKFPKRIDREIAMGAQKWV-SVNRHASAKECISHVR 100

Query: 86  ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                I AT+            P + ++ L +   + +   + FG ER+GL+ E I  ++
Sbjct: 101 EMGYQIVATS------------PHDDSLHLGDFDIT-KKSALFFGTERYGLSQEIIDEAD 147

Query: 142 AIISFPVNPLFPSLNISQAVLLM---VWECMENSIVSSEKNVKEQNTP 186
             +  P+     SLNIS +  ++   + E M    V  + N +E+   
Sbjct: 148 CTLKIPMYGFTESLNISVSAAIILQSLAEKMRKDDVKWQLNEQEKEAL 195


>gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 220

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       N+G   R+     +  + +   R    +  A+  +  A   +  +RV +  
Sbjct: 76  ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 133

Query: 78  KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      A T R     N   V    EA   L +    G  + ++ G E  G+   
Sbjct: 134 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGMRRL 182

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + +IS P+     SLN+S A  + ++E +   
Sbjct: 183 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 219


>gi|110636572|ref|YP_676779.1| RNA methylase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279253|gb|ABG57439.1| RNA methylase, SpoU family [Cytophaga hutchinsonii ATCC 33406]
          Length = 176

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 14/166 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      +I+L + +   N+G   R    F + ++ L       P+ +   ++  A   +
Sbjct: 19  KTKKTSIIIVLDNVRSLHNVGSFFRTADAFQIEKIYLCGITGTPPNREIHKTALGATESV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQNVGIIF 125
           +                       + + N   +L+ ++    +  +   I       +IF
Sbjct: 79  EW-----------EHAPLAVGFLPKLKANGYQILSIEQTDKSIALQDFSINKENKYVLIF 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E +G++ E I LS+  I  P      S N+S    +++WE    
Sbjct: 128 GNEVYGVSEEVIKLSDHAIEIPQFGTKHSFNVSVTGGIVLWEFFRR 173


>gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 23/179 (12%)

Query: 7   QLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSA 62
           +L +S +G   +++L       N+G   R   +       ++ P+D      A     ++
Sbjct: 86  ELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVGAH--AVIAPKDRSAGINATVEKVAS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L++      ++  T     ++ KS+  P               
Sbjct: 144 GAAETVPYITVTNLARTLRQLKERDIWVVGTA---DDSDKSLYEPDY-----------AG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
               + G E  G+        + +++ P+     SLNIS A  + ++E     ++   +
Sbjct: 190 GTAFVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLYEARRQRLMKIRQ 248


>gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894]
          Length = 357

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+  +F +    +V       S  A  ++      ++ +    +  +A+A  
Sbjct: 220 PHNLGAIVRSCAHFGVKG-VVVQDASLLESGAAVRTAEGGAEHVEPIT-GDSFSDALAQF 277

Query: 85  H---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +   TT+ ++        P   A +        + + ++ G+E  G++    A ++
Sbjct: 278 RAAGYAIVTTSSHKG------TPLFKATL-------PKKMVLVLGQESEGISEATQANAD 324

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +S        SLN+S A  +++ E    
Sbjct: 325 LSLSIDGTGNVESLNVSVATGVLLAEWWRQ 354


>gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
 gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
          Length = 242

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N++ + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +   +  +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEEGFWIFGT--------------DMNGTPSHQWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
 gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
          Length = 247

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L + +   N+G + R         + +   R    +     +S  A   +   RV +   
Sbjct: 100 LDELEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEHVPVARVTNLSR 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + E      +I  T A+  ++++               +  G  + ++ G E  G++  
Sbjct: 160 TIDELKDRGVWIVGTDAKESDDYR--------------NLDGGMPLTLVIGSEGKGMSRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                + ++  P+     SLN S A  L+++E   
Sbjct: 206 IREKCDFLVQLPMVGHVTSLNASVAASLLMYEVYR 240


>gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
 gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
          Length = 255

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 14/168 (8%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L +    P  ++V  +     N+G + R         + +   R    +     +SA A
Sbjct: 94  ALADERGEPPFLIVADELNDPHNLGAILRTAECTGAHGVIIPKRRSAGLTYTVGKASAGA 153

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +   RV SNL  A+ DL        + R  +  +           E   +G    ++
Sbjct: 154 LEYVPVARV-SNLAAALEDL--------KKRGLW--IYGADMEGTPWCEAELTG-PAALV 201

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+        + I+S P+     SLN S A  ++++E M   
Sbjct: 202 IGSEGAGIGRLVKEKCDVILSLPMRGKINSLNASVAAGVLMYEFMRQR 249


>gi|116671282|ref|YP_832215.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116611391|gb|ABK04115.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 155

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 25/170 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+   P++  N G   R        +L LV P  G+    A+   A  D   +  V V 
Sbjct: 3   RILFHTPEIPGNTGNAIRLAAITG-AELHLVEPL-GFDFSDAKLRRAGLDYHDLAVVTVH 60

Query: 75  SNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +++   EA+     +YA T+                      I       ++FG E  G
Sbjct: 61  KSIEAAWEALQP-ERVYAFTS--------------DGETSYADISYLPGDVLLFGPESVG 105

Query: 132 LTNEEIA---LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           L   E+       + +  P+ P   SLN++ A  + V+E    +  +  K
Sbjct: 106 LP-AELKNDPHVTSRVRLPMLPSLRSLNLANAASIAVFEAWRQNGFAGAK 154


>gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
 gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
          Length = 270

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 22/153 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKE 79
             N+G + R         L LV       S +A  +S  A   + +V +        L  
Sbjct: 129 PGNLGTILRTGDAVGAGGLILVGECVDPFSVEAVRASMGA---LFTVPIVKTEWQPFLDW 185

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  +   +     +++                       ++ G E  G+  +  A 
Sbjct: 186 LRQGPGQLVGLSLDTETDYR--------------SADYTAPTFLLTGNEAQGMPADYAAA 231

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++  P+     SLN + A  +M +E +   
Sbjct: 232 CDVLVKIPMLGKADSLNAAVATAVMAYEVLAQQ 264


>gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
           C4D1M]
 gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
           C4D1M]
          Length = 247

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 20/181 (11%)

Query: 3   PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSE 55
           P A  L     G      +++L       N+G   R           ++ PRD     + 
Sbjct: 80  PLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPRDRAVGLNA 137

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            A   ++ A   +  + V +NL  A+ +L                V    EA   L E  
Sbjct: 138 TAAKVASGAADTVPYITV-TNLARALREL---------KEAGVWIVGTAGEAKKSLYETE 187

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             G  V I+ G E  G+        + ++  P+     SLN+S A  + ++E +    V 
Sbjct: 188 LDG-PVAIVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLFEAVRQRAVK 246

Query: 176 S 176
            
Sbjct: 247 K 247


>gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48]
 gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           entomophila L48]
          Length = 247

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +      +++L       N+G   R       T + +   +    +   R  +  A  VI
Sbjct: 92  RTETPPLILVLDGVTDPHNLGACLRTADAAGATAVVIPKDKSASLTAVVRKVACGAAEVI 151

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             V V +    L++      ++  T               EA   + ++  +G  V +I 
Sbjct: 152 PLVAVTNLSRTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-MIM 197

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 198 GAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
           15053]
 gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
           15053]
          Length = 263

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 15/159 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRV 73
           +++L + Q   N+G V R      +T + + +      + K   S+  +     +   + 
Sbjct: 115 ILVLDNLQDPGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAK- 173

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L EA+           R + +     A     ++  +     +      G E  GL 
Sbjct: 174 --DLTEAVR----------RMKESGIHTYAAHLDGVLSYDEADLTKPCAFFIGNEGSGLR 221

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  AL++  I  P+     SLN + A  ++++E     
Sbjct: 222 EEVAALADTYIRIPMEGEVESLNAATAAAVLMFEAARQR 260


>gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
 gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
          Length = 259

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 23/165 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDS 70
           KG  ++L   Q   N+G + R    F ++QL          + K   ++    A  VI  
Sbjct: 111 KGVRVVLDGVQDPGNLGTIIRLCDWFGVSQLICSKDTVDCFNPKVVQATMGSLARVVISY 170

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V + S L+E          TT              E   + +E+I       ++ G E  
Sbjct: 171 VDIKSLLQE----------TT------LPIYGGVLEGVSLYSEKIEEDSY--LVVGNEGN 212

Query: 131 GLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECMENS 172
           G++ E IA+    I+ P    +    SLN++ A  +++ E M  +
Sbjct: 213 GISEEIIAILTHKITIPQYGASQKTESLNVATATAILLSEVMRTT 257


>gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum CMR15]
          Length = 259

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +   +IL   Q   N+G + R      +  + +        S K   ++  A   
Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166

Query: 68  IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++ V      +   A LH  + AT++  R+    +                 + VG +FG
Sbjct: 167 LNVVEHC-TFESVHARLHVPLLATSSHARHAVFDMPL--------------NKPVGWVFG 211

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            E  G++ + +++    IS P      SLN+  A  + ++E +    VS
Sbjct: 212 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVGAAAAICLFEAVRQRRVS 259


>gi|297158833|gb|ADI08545.1| rRNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 258

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 20/170 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            S   PV++L +P+   N+G V R    F +  +      D W     RS +      + 
Sbjct: 108 PSRSAPVVVLDNPRNLGNVGAVVRLAAGFGVAGVVTTGDIDPWHPNAVRSGAG-----LH 162

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                  L                + +     L   +A       +    +  + FG ER
Sbjct: 163 FATAVERL---------------TSDDLPPGPLYALDAEGEDIRSVVIPDDALLAFGSER 207

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            G++ E    +  +++ P+ P   S N++ +V + ++           + 
Sbjct: 208 HGISPEVRKRATRLVALPMRPQVSSYNLATSVAMALFHWGGPVQAPPAQP 257


>gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
 gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
          Length = 235

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 13/151 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VI+L + Q   N+G + R   +F    +          + K   +S  A        +F 
Sbjct: 95  VILLDEIQDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQASQGA--------IF- 145

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++     DL  +   ++      K +    + +I L +++    ++ I+ G E  G+   
Sbjct: 146 SIPVFREDLKNVI--SSLQERGIKVLGTSLQQSIPL-KKVKKEDDIAILLGNEGQGVKGN 202

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + L + I    ++  F SLN++ A  ++++
Sbjct: 203 LLELCDEITRIEMSG-FESLNVAVAGAILMY 232


>gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel]
 gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel]
          Length = 262

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 21/145 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRV---FSNLKEAI 81
           N+G + R+   F++  + L  P    PSE       S+ A  ++  VRV      ++   
Sbjct: 121 NVGAIVRSAACFDVDAVIL--PEHHSPSENCIITRVSSGAADLVPVVRVGNLVKTMEYLK 178

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            + ++ Y                          I   +   II G E  G+        +
Sbjct: 179 QNGYWCYGM--------------DVDGDKALHEISFCERRAIILGSEGKGIRRLTREHCD 224

Query: 142 AIISFPVNPLFPSLNISQAVLLMVW 166
            ++  P++    SLN+S A  ++++
Sbjct: 225 HLVKIPMSARINSLNVSNAAAIVLY 249


>gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii
           Ech703]
 gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
           Ech703]
          Length = 244

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  +   P +++L       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  +RV +             A T R     N   V    EA   L +   +G  
Sbjct: 144 GAAESVPLIRVTN------------LARTLRFLQERNVWIVGTAGEADHTLYQSKLTG-P 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRL 243


>gi|153833892|ref|ZP_01986559.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
 gi|269959394|ref|ZP_06173777.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|148869730|gb|EDL68707.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
 gi|269835831|gb|EEZ89907.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 227

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP +      +SA A   ++ V    +++ AI 
Sbjct: 30  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VDTHDSIETAIT 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G + +   L++ 
Sbjct: 84  EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +     +E   P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYEREESALP 178


>gi|237738319|ref|ZP_04568800.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420199|gb|EEO35246.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 255

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + RA        + L        +EK   SS  +   I ++ +    
Sbjct: 110 VLDKIQDPGNLGTIIRAADAAGFKDIILTKGSVDCYNEKCVRSSMGS---IFNMNIV--Y 164

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            E +  + F+          +K ++   E   +    I   +   IIFG E  G+++  +
Sbjct: 165 MEELQLIQFL------KEKKYKFLVTALENNSIEYTDITLSEKNAIIFGSEGNGVSDNFL 218

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +++  +  P+     SLN++ A  +++++  E
Sbjct: 219 KVADETVIIPIYGSAESLNVAMASGIILYKVRE 251


>gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 254

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 10/101 (9%)

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L+EA+          A  R+   +VLA   +     E          +FG E  GLT +
Sbjct: 164 TLQEAV----------AALRSAHLAVLAADASGTTDVETAPLAAPSAWVFGTEAQGLTAD 213

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E+AL++A++  P+     SLN++ A  + ++       V  
Sbjct: 214 ELALADAVVRVPLRGHAESLNVAMAATVCLYASSRAQHVPG 254


>gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 269

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 25/164 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKEAI 81
           +   N+GM+ R         + L  PR G P        ++        V   + L +A+
Sbjct: 122 KNPSNVGMIIRTCLAAGFDGIIL--PRKGCPDLNPLVIKASAGTAFYTRVLRCAELSDAL 179

Query: 82  ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             L      IY  +                A      +        + G E  G+  +  
Sbjct: 180 QQLRQANYTIYGLSGT--------------ATSTLYNLSFSPFSVFVLGNETEGINRDHH 225

Query: 138 ALSNAIISFPVNPLFP--SLNISQAVLLMVWECMENSIVSSEKN 179
            L +  +S P+   FP  SLN++ A  ++ +E     +     N
Sbjct: 226 NLIDTWVSIPI--EFPAESLNVASAAAVVCFELKRQHLEQHSSN 267


>gi|255264534|ref|ZP_05343876.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
 gi|255106869|gb|EET49543.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
          Length = 157

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 19/161 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           +LV P++  N G + R+     L +L L+ P      EK+   +         V +  + 
Sbjct: 9   VLVTPEIPYNTGAIGRSCVALGL-ELILIKPYGFSLDEKSVRRA--GTDYWKHVDLSEYD 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +  + +             R   +  +   +E             +  ++FG E  GL  
Sbjct: 66  SWADFLE-----------TRQPPRDQMYFFEEDGAQSFYAPEYHPDGYLVFGCESAGLPA 114

Query: 135 EEIALS-NAIISFPV-NPLFPSLNISQAVLLMVWECMENSI 173
             +    + +   P+ +    SLN++      +++ M  ++
Sbjct: 115 SVLDGMEDRMFHLPMLDTRVRSLNLANVATAAIYQAMRGTL 155


>gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae P1031]
 gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae P1031]
 gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17545]
          Length = 242

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNRL 242


>gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP19-BS75]
 gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47901]
          Length = 242

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNRL 242


>gi|89095094|ref|ZP_01168021.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
 gi|89080655|gb|EAR59900.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
          Length = 238

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 66/152 (43%), Gaps = 12/152 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R      +  +  V P++G+ +   R ++  +D  + S R   +++ AI+  
Sbjct: 30  PRNLSALVRNCDAVGIHSIHTVVPKEGYRT--YRGTAKGSDYYVKS-RAHESVENAIS-- 84

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             +     R +          + AI   E  F+ Q   ++ G E+ G+++    +S+A +
Sbjct: 85  --VV----RQQGMKVVAAHFSDKAIDYREFDFT-QPCALLMGAEKQGVSDVAAQMSDAHV 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             P+  +  SLN+S A  +++ E     + + 
Sbjct: 138 VIPMMGMVSSLNVSTAAGIILVEAQHQRLKAG 169


>gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
 gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
          Length = 256

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 15/168 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           +L   Q   N+G   R      +    ++ PRD     +     ++  A   I       
Sbjct: 102 VLDQVQDPHNLGACLRTAAGAGVQ--AVITPRDRAVGLTPTVYKAATGAVQHIP------ 153

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                +  +  +  T  + R     ++   E A V    +     + ++ G E  GL   
Sbjct: 154 -----LFQVTNLARTLRKLREAGMWLIGAAEQADVTLYEVDLSGPLVLVMGAEEAGLRRL 208

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
             A  + +I  P+     SLN+S A  ++++E +   +    K    +
Sbjct: 209 TRACCDRLIRIPMLGAIDSLNVSVATGVVLYEVVRQRMHGFTKPPLRE 256


>gi|326437534|gb|EGD83104.1| hypothetical protein PTSG_12070 [Salpingoeca sp. ATCC 50818]
          Length = 717

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 13/182 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NI  + R    F +     +        ++ R  S  AD  +  V  + +  + +A L 
Sbjct: 43  GNISAIQRTCDAFGVHDFHTIRRFPMDRMKQHRHVSKGADKWL-RVHRWGSTGDCMAHLR 101

Query: 86  ---FIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              +  A TA  + ++          A+ L       Q    +FG E  G++ + +  ++
Sbjct: 102 QHGYRIAVTAVADDSSSNHASVTDLHALEL------DQPTAFVFGNEVAGISTQALEEAD 155

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
            ++  P+     +LN+S A   ++             +  V  ++    +      L  L
Sbjct: 156 VLVQIPLVGFVSALNVSVAAGCVLHHATLQRRRFQGDDGGVISEDEALARMTTELLLRSL 215

Query: 200 EI 201
             
Sbjct: 216 GE 217


>gi|326385630|ref|ZP_08207264.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209964|gb|EGD60747.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 150

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 25/163 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRV- 73
            I L +P++  N+G V R         + L+ P    W   + R ++      ID V + 
Sbjct: 2   RIALFEPEIAGNVGAVLRLGACLGAA-VDLIEPMGFTWDDRRVRRAAM---DYIDHVTIA 57

Query: 74  ----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F   +  I     +  TT    + +     P +                ++FG+E 
Sbjct: 58  RHADFDAFRATIGAQRLVLFTTKSAESVYDFAFRPDDI---------------LLFGKES 102

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+         A I  P+ P   S+N++ +  L + E +  +
Sbjct: 103 AGVPAPVSDACTARIRIPMRPEVRSMNLAMSAGLALGEALRQT 145


>gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 248

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 24/167 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF 74
           I+L + +   N+G + R           +V P  R    +     +SA A   +   RV 
Sbjct: 99  ILLDEIEDPHNLGSILRTADCTGAHG-VIV-PKRRSAAVTVTVSKTSAGAVEYVPVARVN 156

Query: 75  S---NLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           +    +     +  ++  T  TA +      V                   V I+ G E 
Sbjct: 157 NLGQTIDRLKEEGVWVVGTDVTATDPVFGNGVFT---------------GPVAIVIGNEN 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G+        + ++  P+     SLN S A  ++++E +       
Sbjct: 202 KGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYEVLRGRQARG 248


>gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
 gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
          Length = 229

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V++L   Q   N G + R    F +  + +   R    +      S+ A   I  +R
Sbjct: 80  PNLVLMLDHIQDPHNFGAIIRNANGFGIKHIIIPKNRACEVTPTVLKISSGAFTEIKIIR 139

Query: 73  V---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V   F  LKE               +N F    +  +       +        +I G E 
Sbjct: 140 VGSLFDTLKEL-------------QKNGFWIYSSTLDDKATKLHKTKFATPTCLIVGNEE 186

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G+++  I  S+A++         SLN++ A  ++++E  +
Sbjct: 187 SGVSHTLIKHSDALVYIEQKGTVQSLNVASATAVLLYEATK 227


>gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
 gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
          Length = 275

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 13/172 (7%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           T    ++ + A   V + V+     N G + R         + L        + K   +S
Sbjct: 110 TTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRAS 169

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQ 119
           A +   I  V V  +   A+             R     VLA         + I      
Sbjct: 170 AGSIFAIP-VIVAPDTSAAL----------GALRGAGLQVLASVLDGEKSLDDIDQLLEA 218

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +FG E  GL+ E  A ++  +  P++    SLN++ A  + +++    
Sbjct: 219 PTAWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAICLYQSARA 270


>gi|307564841|ref|ZP_07627369.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
 gi|307346563|gb|EFN91872.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
          Length = 181

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 72/171 (42%), Gaps = 13/171 (7%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + K P V++L D +   N+G + R+   F +  + L       P+ +   ++   +
Sbjct: 16  EFKEAKKLPLVVVLDDVRSLYNVGSIFRSGDAFRIKAVYLCGITATPPNAEIHKTALGGE 75

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER---IFSGQNVG 122
             ++  + F+  ++AI  LH        ++  +   +   E ++ L +    +       
Sbjct: 76  DSVEW-KYFTRTEDAIVALH--------DQGYYVYCVEQVEGSVKLQDLSKILTPHSLYA 126

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           II G E  G+    + LS+  I  P      SLN+S    +++WE  +  +
Sbjct: 127 IIMGNEVKGVKQTVVDLSDNSIEIPQFGTKHSLNVSTTAGIVIWEFAKAYL 177


>gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
           ATCC 29220]
 gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
           ATCC 29220]
          Length = 243

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  +   P   IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIAALDQPFFLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
 gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
          Length = 210

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 28/193 (14%)

Query: 1   MTPY----APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPS- 54
           MTP        + N  +  + +L++      N   + R+     + +   +  + G P+ 
Sbjct: 1   MTPERLARIRAVLNKRQPDLTVLMERVHKPHNFSAILRSCDAVGVLEAHAIPAKHGIPNL 60

Query: 55  EKARSSS-----------ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA 103
           E+A   S           + A  V   +++ ++   A A L       AR      +  +
Sbjct: 61  EEAEDLSLKGKTFNETSGSAAKWV--GLQLHADTASAFAHLK------ARGFQVLAAHFS 112

Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
            +    V   +    +   I+ G E+WG++ E   L++A I  P+  +  SLN+S A  +
Sbjct: 113 ER---AVDYRQADYTRPTCILLGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAV 169

Query: 164 MVWECMENSIVSS 176
           +++E     + + 
Sbjct: 170 ILFEAQRQRLQAG 182


>gi|315503266|ref|YP_004082153.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315409885|gb|ADU08002.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 294

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 15/188 (7%)

Query: 6   PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           P  Q  A+GP ++  LV  +   N G V R         +          + K   +SA 
Sbjct: 117 PLEQAVARGPRLVAVLVGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASAG 176

Query: 64  ADCVIDSVRVFSNLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +   +D VR    L   EA+      I ATT    ++   +      A            
Sbjct: 177 SLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLAA----------P 226

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
              +FG E  GL +E    ++A +  P++    SLN++ A  + ++            + 
Sbjct: 227 TAWLFGSEAHGLPDELTGAADARVRVPLHGRAESLNLAAAAAVCLYSSARAQRAPRATHD 286

Query: 181 KEQNTPAT 188
               + ++
Sbjct: 287 TAGESASS 294


>gi|242089459|ref|XP_002440562.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
 gi|241945847|gb|EES18992.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
          Length = 220

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 21/145 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G +AR+   F + ++ +V  RD      +   S  A   +   R F++L  A+A  +
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFASL--ALARAY 69

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                    R      +   E A  +    F  ++   +FG E  GL+ +E  + +  + 
Sbjct: 70  L-----KEERGCDICGVEITEDAKPVTAHPFH-RSTAFLFGNEGTGLSQKECDICDFFVY 123

Query: 146 FPVNPLFP----SLNISQAVLLMVW 166
            P    +     SLN++ A  +++ 
Sbjct: 124 IP---QYGGGTASLNVTVAASIVLH 145


>gi|152993149|ref|YP_001358870.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425010|dbj|BAF72513.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 258

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 24/169 (14%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
                ++    +I+L +    +NIG +AR+    ++  L L  PR G      R+   + 
Sbjct: 102 KESTLDALGNHIIMLDEISNTDNIGSIARSAAALDVGSLLL--PRQGPHPYARRALRVSM 159

Query: 65  DCV--IDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
             +  +   R + N+KE I            A   ++      V  P + A         
Sbjct: 160 GHIGKLKFHR-YDNIKETIQKLKKMGYRIFAAEVTKDSTPLSQVRVPGKWA--------- 209

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                ++ G E+ G+++E +AL + +++  +     S N++ A  +M++
Sbjct: 210 -----LLMGHEQLGISDEILALCDEVVTIEMEEGIKSFNVAVAASIMMY 253


>gi|114569286|ref|YP_755966.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114339748|gb|ABI65028.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 148

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 23/162 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSV 71
            I+   P + +N+G   R    F   +L ++ P     ++K    +A     A   +   
Sbjct: 2   RIVFFQPDIPQNLGAAMRVAACFG-AELDIIEPCAFPLTDKGIRRAAMDYQAAISPLRHA 60

Query: 72  --RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             + +    EA A    +  TT      +     P +                ++FGRE 
Sbjct: 61  SWKAYQASAEASAG-RLVLFTTRGAGKLWDFSFRPDDR---------------LLFGRES 104

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+ ++    +   +  P+     SLN++ +  + + E    
Sbjct: 105 AGVPDDVHDAATCRVKIPIREGMRSLNVTVSAGIALAEASRQ 146


>gi|49474493|ref|YP_032535.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239997|emb|CAF26411.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 157

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 11/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R    F L  + ++ P     S++    +      ++   +  +
Sbjct: 5   IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFSLSDRNLKRA--GMDYLEYASLNRH 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +     D     +T    ++  + +L     A     +I+  +N  ++FGRE  G+ +  
Sbjct: 62  I-----DWQSFMST---MKHFNRRLLLLSTKAETCYTQIYYRENDVLLFGRESAGVPDYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +  +  P+ P   SLN++ +V +   E +  
Sbjct: 114 HEAVDHSLKIPMQPHARSLNLAMSVAITTGEALRQ 148


>gi|291514444|emb|CBK63654.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 178

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 11/147 (7%)

Query: 3   PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P A +     K PV ++L + +  +N+G   R    F + ++ L       PS     ++
Sbjct: 12  PSAEEFAAMEKMPVTVVLDNVRSAQNVGAFFRTGDAFAVERIVLCGITATPPSRDIHKTA 71

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQN 120
             A+  +      S +   IA L        R        +   E A++L+  R   G  
Sbjct: 72  LGAEMTVPWSYCASTVG-CIAQL--------RAEGYAVYAVEQVEGAVMLDAFRAAPGVK 122

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFP 147
             ++FG E  G+  E +   +  +  P
Sbjct: 123 YALVFGNEVDGVGQEAVDRCDGAVEIP 149


>gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
 gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
          Length = 286

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L   +   N+G + R       + + LV       S +   ++  +       R  ++
Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVAR--AS 192

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++E +     A +  + AT      +++ +               +G+ V I+ G E+ G
Sbjct: 193 VEEFLSWKKSAHVS-VVATHLAGSVDYRKIDY-------------AGKPVVILMGNEQSG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  E    ++ +   P      SLN++ A  +M++E   + +  + 
Sbjct: 239 LPPELAGKADQLARIPQQGRADSLNLAIATAVMLFEARRHLLELAP 284


>gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           GB-1]
          Length = 248

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 21/173 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66
           +      +++L       N+G   R       T   +V P+D     +   R  +  A  
Sbjct: 92  RTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVACGAAE 149

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           VI  V V +    L++      ++  T               EA   + ++  +G  V +
Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-V 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQAKR 248


>gi|89076058|ref|ZP_01162418.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89048210|gb|EAR53792.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 241

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81
             N+  + R      + ++  V     WP E  +  S   A A   ++ +    ++ EA+
Sbjct: 30  PNNVSAIIRTADAVGVHKVHAV-----WPKENMKVLSHTSAGARNWVE-LDTHDSMVEAV 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T +++          + AI   + +   +   +I G E+ G+T E +A+++
Sbjct: 84  Q--------TLKDQGMQVLATNLSDTAIDFRD-VDYTKPTAVILGGEKNGITAEALAMAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             I  P+  +  SLN+S A  L+++E       +     ++   P
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179


>gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
           DFL-43]
 gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
           DFL-43]
          Length = 300

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRV 73
           V+IL       N+G + R+   F      LV  +   P E      +++ A  +ID + V
Sbjct: 149 VVILDQVTDPHNVGAIMRSAVAFGAG--ALVTTQRHSPQESGVLAKAASGALEMIDHIEV 206

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL  AI D+     TT    +   S +          E    G  + ++ G E  GL 
Sbjct: 207 -RNLASAIEDIKAQGFTTVGLDSEGPSPI----------EAGLKGARIAMVLGAEGKGLR 255

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +     + +    +     SLN+S A  + ++   +
Sbjct: 256 QKTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQ 292


>gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 223

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +LV+      N+  + R      + +   ++  +   +  + +  +     +++     N
Sbjct: 24  VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +AI+DL      +Y TT  +++                      QN   + G E+WGL
Sbjct: 81  TIKAISDLKNKGFKLYGTTLNSKSVDYRNFD-------------YSQNTCFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +NE I++ +  I  P+  +  SLN+S A  ++++E +   
Sbjct: 128 SNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167


>gi|187917931|ref|YP_001883494.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
 gi|119860779|gb|AAX16574.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
          Length = 227

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 78/220 (35%), Gaps = 35/220 (15%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADC 66
           L N      ++L D    +N     R +    L+ + ++   + +  +      ++    
Sbjct: 37  LNNRTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNKYTLNPGVVLGASKWID 96

Query: 67  VIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +I    V   F NL                  N +K V    +   +  E       + I
Sbjct: 97  IIKYKCVKAAFDNL----------------KGNGYKIVATSLDNKAISLEDFPIDAKLAI 140

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
            FG E  GL++  +  ++  +  P+     S N+S AV ++ +  +     SS + + ++
Sbjct: 141 FFGTELTGLSHSVLENADLHLKIPMYGFTQSYNLSVAVAIVFYSLISRLKKSSIRYLLDE 200

Query: 184 NTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLY 223
           +               E  + +  Y+R + K  + +++L 
Sbjct: 201 D---------------EKLVLKLDYYRKIIKNYQAIEELK 225


>gi|313680632|ref|YP_004058371.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
           14977]
 gi|313153347|gb|ADR37198.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
           14977]
          Length = 258

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 14/170 (8%)

Query: 5   APQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           A +L++    P  +LV  + +   N+G + R+        + +V       +     +S 
Sbjct: 98  ARRLEDLPTRPRRVLVAVEIEKPGNLGAMLRSADASGADAVLVVGEAVDPENPNVIRAST 157

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
                         L  A  D     A  A  R     ++A    A  +           
Sbjct: 158 G---------TVFTLPLAAVDHD---AARAWLRERGLQIVAAAPRARRVYWEADLSGPTA 205

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + G E  GL    +  ++  +  P+  +  SLN S +  L+++E +   
Sbjct: 206 FVVGAEDRGLPPGWLEAADLAVRIPMEGVADSLNASVSAALLLYEGLRRQ 255


>gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 243

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    + P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIALHERPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +    G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   I
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRI 243


>gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN]
 gi|221230209|ref|YP_002503625.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae]
 gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 259

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 21/176 (11%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL----RLVNPRDGWPSEKA 57
           T     +   +   V+  V+     N G V R         +      V+P +G      
Sbjct: 96  TTRLATVLAGSPQLVVAAVEISEPGNAGTVIRIADAMGAAAVIFGGYTVDPYNG------ 149

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +   ++A  +     V ++  +A       YA     R     VLA         +    
Sbjct: 150 KCLRSSAGSIFSITVVVAS--DA-------YAAVTELRAAGLQVLATMVDGETSLDEAKP 200

Query: 118 --GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+    +FG E  GL+ E    ++  +  P+     SLN++    + +++    
Sbjct: 201 LLGKPTAWLFGSEPHGLSTEIAEAADYRVRIPMVGGVESLNVAATAAICLYQSSRA 256


>gi|86143085|ref|ZP_01061507.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
 gi|85830530|gb|EAQ48989.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
          Length = 268

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%)

Query: 10  NSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  K P+I++ + P+   NIG + R      +    L NPR    +     SS      +
Sbjct: 113 DLPKNPLIMVAEAPEKPGNIGALLRTADAAGVDAFILANPRTDLYNPNIIRSSVGGLFTV 172

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  + +E I  L          +    ++        +  E+        ++ G E
Sbjct: 173 PVAT--GSTQEVIDFL----------KQKNIAIYTAILQEAISYEKQDFTTASALVVGTE 220

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GL+    A +   I  P+     S+N+S A  ++++E     
Sbjct: 221 ADGLSEAWRAAAKQNIIIPMQGRLDSMNVSVAAAILIFEARRQR 264


>gi|332296699|ref|YP_004438621.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332179802|gb|AEE15490.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 250

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSSSANADCVIDSVRVFSNLKEAIAD 83
           N+G + R+   F +  + +  P D   S     +   +      ++ VRV+ +++ A+  
Sbjct: 113 NLGAIVRSAAFFGIRNIVI--PLDEAQSSVTTSSYRVAQGG---MEYVRVY-SVRSAVRL 166

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L  +     R   + +   AP      L      G+   ++ G E  G++       + +
Sbjct: 167 LQDMSGKMVRFGTDVRGA-APVSNMARLRA----GKAALVVLGNEEAGISPLIRENCDHL 221

Query: 144 ISFPV-NPLFPSLNISQAVLLMVWECME 170
           I  P  N    SLN++QA  ++++E  +
Sbjct: 222 IIIPAVNAAVESLNVAQAASIILYELAK 249


>gi|290958962|ref|YP_003490144.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260648488|emb|CBG71599.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 256

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 20/164 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +     PV++L +P+   N G V R    F  T +      D W     R  +      +
Sbjct: 112 RTPRAAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 166

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                   L+ A               +     L   +        +    +  + FG E
Sbjct: 167 HFATAVERLEVA---------------DLPPGPLFALDPEGDDIRGLKLPDDAVLAFGSE 211

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           R GL+    A ++ ++S P+ P   S N++ +V + ++     S
Sbjct: 212 RSGLSAGLRARADHLLSLPMRPQVSSYNLATSVAMTLYHWSAGS 255


>gi|91794292|ref|YP_563943.1| tRNA guanosine-2'-O-methyltransferase [Shewanella denitrificans
           OS217]
 gi|91716294|gb|ABE56220.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans
           OS217]
          Length = 233

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 18/152 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83
           NI  V R+     + Q+  V     WP    R    +++ +   + +++ +   +EA   
Sbjct: 32  NIAAVIRSADCVGIHQIHAV-----WPDIDMRVSGNTASGSQQWVKTIKHYR-FEEAEQ- 84

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                   A N  N + +        V    I   +   I+ G ER G + E IA ++  
Sbjct: 85  --------AFNAQNMQILTTTFSDTAVDYRDIDYTKPTAIVMGNERDGTSPEAIAAASQH 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           I  P+  +  SLN+S A  L+++E      ++
Sbjct: 137 ILIPMIGMVQSLNVSVAAALVMYEAQRQRQLA 168


>gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 275

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 27  NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKE---- 79
           N+G + R  A  N       LV P    P   +A   S      +   ++ +   +    
Sbjct: 134 NVGAIFRSAAALNM---DAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPEN 190

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            IA LH +   TA    + +SV        + +  + +   + I+ G E  GL +  IA 
Sbjct: 191 GIAQLHSLGFKTAAMALSDRSV-------SIDDSALSAEPKLAIVLGTEGDGLAHSTIAA 243

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            +  +  P++    SLN++ A  +  W+ 
Sbjct: 244 CDYTVKIPMSHGVDSLNVAAASAVAFWQL 272


>gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
 gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
          Length = 292

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 12/145 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+    N+    LV PR   P   ++   S      +   R    L+   ADL 
Sbjct: 155 NVGAIFRSAAALNV-DAVLVTPRCADPLYRRSIRVSMGTVFQVPWAR----LESWPADLQ 209

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                T        + LA +E ++ L E      + + +I G E  GL+   +A  +  +
Sbjct: 210 -----TLHELGFKSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTV 264

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
             P++    SLN++ A  +  WE  
Sbjct: 265 MIPMSHGVDSLNVAAASAVAFWETR 289


>gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis TXDOH]
          Length = 262

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           A  L        ++L   Q   N+G + R+     + Q     P   +  S K   S+  
Sbjct: 104 ASALPERVSDTSVVLDGVQDAGNVGSILRSAAAAGVKQ-VFCAPGTAYAWSSKVLRSAMG 162

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++D   +  ++           A T   R      L     A  + +   +G  V  
Sbjct: 163 AHFLLD---IHEDVD----------AGTLIERLAIPVALTDSHGARAIYDCDLTG-PVAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +FG E  G++      +   ++ P      SLN++ A  + ++E          
Sbjct: 209 VFGNEGAGVSVRWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQQRAPGA 262


>gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 304

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVFS 75
           +IL       N+G + R    F++  + +   R   P     + +++ A  V+  VRV  
Sbjct: 139 VILDQVTDPHNVGAILRTCAAFDVAAM-ITQDRHAPPESGTLAKAASGALEVVPWVRVV- 196

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  A+          +     +  +    E        + +G  V ++ G E  GL + 
Sbjct: 197 NLSRALE---------SIAEAGYWRIALDGEGKAEFPSALPTG-PVALVLGAEGEGLRHN 246

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
            +   +++   P++    SLN+S 
Sbjct: 247 VLQHCDSVARLPISRAIESLNVSN 270


>gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           parasanguinis ATCC 903]
 gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           parasanguinis ATCC 903]
          Length = 242

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N++ + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +   +  +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEEGFWIFGT--------------DMNGTPSHQWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
 gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
          Length = 244

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 12/161 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL +     N+G + R         + +   R    +     +SA A   +   +V +
Sbjct: 96  IIILDEITDPHNLGSIIRTADAVGAHAVVIPKRRSVDITPVVAKASAGAVEYVPVCKVTN 155

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      I  T    +     + A      V  ++  +G  +G++ G E +G++  
Sbjct: 156 -----------IVNTIKMLKEEGLWIAAADMDGGVFYKQDLTG-PLGLVVGSEGFGISRL 203

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + ++S P+     SLN S A  ++++E         
Sbjct: 204 VKQNCDFVVSMPMVGNVTSLNASVAGGILLYEVFRQRTSGK 244


>gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. WH 5701]
 gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. WH 5701]
          Length = 547

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 15/165 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+        L L   R+   +      +A A   +   RV  NL  +I  L
Sbjct: 284 PHNLGAIVRSAEALGAHGLVLPQRRNAGLTGSVAKVAAGALEHLPVARVV-NLNRSIEQL 342

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                        ++ V   +E  + L E    G  V ++ G E  GL+       + +I
Sbjct: 343 ---------KDAGYRVVGLAEEGNVSLMEADLDGPLV-VVTGSEAQGLSMLTRKHCDQLI 392

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
             P+    PSLN S A  L+++E      + +       N PA +
Sbjct: 393 RIPLRGATPSLNASVATALLLYEIARRGWMKNISG----NAPAPR 433


>gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 240

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 21/152 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F   Q+ +        ++K   ++  A  +        NLK+AI 
Sbjct: 106 QDPGNVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGA--LFQMNVCVMNLKDAIV 163

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      +Y T  R+                  E       +  + G E  G+ +E + 
Sbjct: 164 FLKHQGVDVYGTCLRD--------------ASSIETYQVKDKMAFVMGNEGQGVCDEILE 209

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L    +  P+     SLN+  A  + ++   +
Sbjct: 210 LCQHRLYIPI-QTVESLNVGIASAITMYHFQK 240


>gi|289178492|gb|ADC85738.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 309

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N G V R+        + LV       + K   ++  +   +    V +  + A  DL
Sbjct: 156 PGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLP---VLAMDERAFFDL 212

Query: 85  -----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  + A           V  P     +L  R     +  ++FG E  GLT E +  
Sbjct: 213 CRERDTTVLAADVYGTEGKPPVSLPD----LLRNRELVEGSKAVLFGNEARGLTTELLDE 268

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMV 165
               +S P+     SLN+  +  +M+
Sbjct: 269 CAMSVSIPIYGKAESLNLGTSAAVML 294


>gi|184155041|ref|YP_001843381.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|260663585|ref|ZP_05864474.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
 gi|183226385|dbj|BAG26901.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|260551811|gb|EEX24926.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
          Length = 168

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 19/170 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           I+L +P    N G +AR          L L+ P      +K    +       D V+V  
Sbjct: 5   IVLFEPLFPANTGNIARTCA--GTDTVLHLIKPLGFSTDDKHMKRA--GLDYWDKVKVVY 60

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L   +  +           ++   V    E      +   +G +   +FG+E  GL 
Sbjct: 61  HDDLVAFLDSIDL---------DHLYIVSKFAERDYSEVDYTIAGDHY-FLFGKETTGLP 110

Query: 134 NEEIALS-NAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
              +       I  P +     +LN+S    ++++E +      +   V 
Sbjct: 111 EGFMRRYPEKAIRIPQDDNNIRALNLSNTAAIVIYEALRQQGFPNLARVH 160


>gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
           12D]
          Length = 250

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 21/171 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDS 70
              +++L       N+G   R           ++ P+D     +      ++ A   +  
Sbjct: 95  TPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVASGAAETVPY 152

Query: 71  VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + V +    L+E      ++  T               + A     +      + I+ G 
Sbjct: 153 ITVTNLARTLRELQERGVWVIGTA--------------DEAEQDLYQADFKGPIAIVMGA 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  G+        +A++S P+     SLN+S A  + ++E +     +  K
Sbjct: 199 EGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPAK 249


>gi|290973947|ref|XP_002669708.1| spoU protein [Naegleria gruberi]
 gi|284083259|gb|EFC36964.1| spoU protein [Naegleria gruberi]
          Length = 307

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 46/218 (21%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVID------ 69
           +L D Q  +N+  + R +  F +  L +++  D    +K  ++  +  A   I+      
Sbjct: 51  VLEDVQSSQNVSAIIRTVECFGMNDLHIISNPDSMSDKKGISKGVAKGATDWINIKQYQN 110

Query: 70  SVRVFSNLKEAIADLHFIYATTA---------------------------RNRNNFKSVL 102
           S   F  LKE   +   I  T+                            R+    + V 
Sbjct: 111 SDECFKELKEK-HNCRIIV-TSPYSIPQLVLGQKRNSWREDQHPSVYNNLRDEITERHVR 168

Query: 103 APKEAAIV------LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
            P    I       LN      + + ++FG E  G++N  I  ++A ++ P+     S N
Sbjct: 169 VPHYIGIENVPIDLLNSDNDYDKPIAVVFGNESHGISNSAIDHADASLTIPLYGFTESFN 228

Query: 157 ISQAVLLMVW---ECMENSIVSSEKNVKEQNTPATKGE 191
           +  +  L  +   E   N + +SE     +    +  E
Sbjct: 229 VHVSTALTTYYLNEKFRNYLKNSETKSLAEKYMLSPEE 266


>gi|238765059|ref|ZP_04625995.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           kristensenii ATCC 33638]
 gi|238696745|gb|EEP89526.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           kristensenii ATCC 33638]
          Length = 365

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 12/152 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 226 PHNLGGIMRTCAHFGINGVLLQDPAVLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 283

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 284 ----------RKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSV 333

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           S        SLN+S A  +++ E    + +  
Sbjct: 334 SIGGTGKVESLNVSVATGILLAEWWRQNTLRP 365


>gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
           C-1013-b]
 gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
           C-1013-b]
          Length = 232

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 17/172 (9%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           T +  +L    K  V++L   Q   N G + R+   F +  + + +      +E    SS
Sbjct: 75  TAFLEKLLRKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSS 134

Query: 62  ANADCVIDSVRVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A   +D V+V      + +     + +Y   A  +N +     P              
Sbjct: 135 TGAIEHVDIVKVTNISDTIDKLKKYGYTVYGAEADGQNYYYQENYP-------------- 180

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +   ++ G E  G+  +     + I+   +     SLN+S A  +++ E  +
Sbjct: 181 EKACLVLGSEGNGMRKKVKEHCDKIVKIHLKGEINSLNVSVAGGIILSEMSK 232


>gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31]
 gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31]
          Length = 278

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L   A+G +++L      +NIG + R+   F    + L +      +     ++  A  
Sbjct: 117 DLGTPAQGLLVMLDQITDPQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVD 176

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            I   RV  NL  A+ +L           +     +A    A    +++  G+   ++ G
Sbjct: 177 KIAYARVV-NLSRALEELA----------DLGWRAVALAGEAQQTLDQVLDGRPTVLVLG 225

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            E  G+        +A+    +   F SLN+S A  + ++E  +
Sbjct: 226 SEGEGVRRLVSEHCDAMGKIAMPGGFESLNVSAAAAVALYEASK 269


>gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 242

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P++    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNRL 242


>gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 243

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L    + P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIALHERPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +    G  + 
Sbjct: 146 AESVPLIRVTN------------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 193 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae
           CDC 74-1112]
          Length = 243

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 12/168 (7%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  +RV           + +         N   V    EA   L +   +G  + ++
Sbjct: 146 AESVPLIRVT----------NLVRTMRMLQEENIWIVGTAGEADHTLYQSKMTG-RLALV 194

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 195 MGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 255

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 94  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 151

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 152 AETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYHCNLPD--------------SA 197

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 198 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 254


>gi|326316588|ref|YP_004234260.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373424|gb|ADX45693.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 264

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 29/171 (16%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P AP LQ     P ++L   Q   N+G + R+   F   Q+  +    G  S K   + 
Sbjct: 103 APEAPVLQAGL--PTVVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAG 160

Query: 62  ANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
             A   +    +   L   + D+      + AT++   +       P             
Sbjct: 161 MGAHFALH---LVEGLS--VDDIDTLRLPLLATSSHGGDLLHRACLPW------------ 203

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
               G I G E  G++      +  +I    P      SLN+  A  + + 
Sbjct: 204 --PCGWILGHEGQGVSEALQQRATHLIRIAQPGGEE--SLNVGAAAAICLH 250


>gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
 gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
          Length = 250

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYHCNLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249


>gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 262

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 21/164 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSV 71
             V++L       N+G   R           +V P+D      A  +  ++ A   +  +
Sbjct: 113 PLVLVLDGVTDPHNLGACLRVAD--GAGACAVVAPKDHAVGLNATVAKVASGAAETVPYL 170

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            V +   +L E       +  T+    +  K++                   V ++ G E
Sbjct: 171 MVTNLARSLGEMKERDIRVIGTS---DDATKTIYDVDLRGP-----------VALVLGAE 216

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 217 GHGMRQLTRKTCDELVRIPMQGAVESLNVSVAAGICLYEALRQR 260


>gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
           ATCC 23970]
 gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
           ATCC 23970]
          Length = 261

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 100 LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 157

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    ++E      +I  T     ++      P               + 
Sbjct: 158 AETVPYITVTNLARTMRELKEYGIWIIGTDMGGESDLYHCNLPD--------------SA 203

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ +EK
Sbjct: 204 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNEK 260


>gi|168017078|ref|XP_001761075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687761|gb|EDQ74142.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 241

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 17/187 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  V R+        + +++       +K R  S   +  +D   ++SN  + I    
Sbjct: 64  GNVSAVCRSADALGFQSVHVISNETKKRYKKNRKVSMGTEKWLD-AELWSNTSDCID--- 119

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T R R    +V       + + +         + FG E  G + E I  S+    
Sbjct: 120 -----TLRQRGYRIAVTHIAPDTVSIYDM-DWTIPTAVFFGNEFMGASEEAIKQSDVRCC 173

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY------- 198
            P+  +  S NIS A  +++     + I+ S  +           E    L +       
Sbjct: 174 IPMAGMVESFNISVAAGIIMHHAARDRIIRSGVHGDISPEDRRILEAEFCLRHNRHTVPL 233

Query: 199 LEISLEE 205
           L+  LE+
Sbjct: 234 LDRLLEK 240


>gi|159038777|ref|YP_001538030.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157917612|gb|ABV99039.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 307

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 15/171 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P A  L  +A+  V+IL D     N+G + RA+    +    L++P    P   ++   S
Sbjct: 145 PTATDLLATARR-VVILEDVNNHTNLGSIFRAVAGLGV-DAVLLSPTCADPLYRRSVRVS 202

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN- 120
                 +    +     +A+A++        R        L P   A+ + +R+  GQ  
Sbjct: 203 MGEVFAVPYAMLGP-WPDALAEV--------RAAGFTVLALTPAPDAVPI-QRLEPGQRS 252

Query: 121 -VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              ++ G E  GLT E +  S+  +  P+     SLN++ A  +  WE   
Sbjct: 253 RAALLLGAEGSGLTREAMEASDVRVVIPMRRGVDSLNVAAATAVACWELGR 303


>gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           italicus DSM 15952]
 gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           italicus DSM 15952]
          Length = 278

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL + +   N G + R      +  + +   R    +     +S  A   +   RV +N
Sbjct: 128 IILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHVPIARV-TN 186

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +A+  L     + + T A    N++S                    + +I G E  G+
Sbjct: 187 LSQAVQTLKERGFWTFGT-AMEGTNYRSWNT--------------QGAIALIIGNEGRGM 231

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + +++ P+     SLN S A  L+++E     
Sbjct: 232 SEGLKKSVDELLTIPMVGHVQSLNASVAAGLLMYEAFMQR 271


>gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
 gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
          Length = 262

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 16/171 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
            L  +     I+L   Q   N+G + R+     + Q     P   +  S K   S   A 
Sbjct: 106 PLPETVGQTCIVLDGVQDAGNVGSILRSAAAAGIQQ-VFCAPGTAYAWSSKVLRSGMGAH 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++   ++  ++           A T   R     V+     A  + +   SG+ +  +F
Sbjct: 165 FLL---QIHEDVD----------AQTLIERLAVPVVITDSHGAEAIYDCDLSGE-LAWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  G++       +  ++ P      SLN++ A  + ++E       +S
Sbjct: 211 GNEGAGVSQAWRDAVSLRVTIPQPGGMESLNVAAAAAVCMFEQCRQRRAAS 261


>gi|157373473|ref|YP_001472073.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|157315847|gb|ABV34945.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 231

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 18/162 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83
           NI  V R      + Q+        WP    R    +++ +   + ++R   ++ EA   
Sbjct: 32  NIAAVIRTADAVGIHQVH-----AIWPDLDMRVSGNTASGSQQWVKTIR-HDHMDEAQTQ 85

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                    R +          E A+   E I   +   II G ER G++ E IA ++  
Sbjct: 86  F--------RAQGMQILATNFSEDAVDFRE-IDYTRPTAIILGNERDGVSPEGIAAADQH 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           I  P+  +  SLN+S A  L+++E       +     +  + 
Sbjct: 137 IIIPMIGMVQSLNVSVASALIMYEAQRQREAAGMYGQRRLDE 178


>gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 169

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 15  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 74

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 75  HVPIARVTNLSQTLDKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 119

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 120 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFLNRL 169


>gi|28896932|ref|NP_796537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365880|ref|ZP_05778374.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260877833|ref|ZP_05890188.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895518|ref|ZP_05904014.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|28805140|dbj|BAC58421.1| tRNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088577|gb|EFO38272.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308089712|gb|EFO39407.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308113480|gb|EFO51020.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|328471708|gb|EGF42585.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 227

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP        +SA A   ++ V   ++++ AI 
Sbjct: 30  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VETHNSIETAIT 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G + +   L++ 
Sbjct: 84  EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +E   P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178


>gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 223

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 21/160 (13%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +LV+      N+  + R      + +   ++  +   +  + +  +     +++     N
Sbjct: 24  VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              AI+DL      +Y TT  + +                      QN   + G E+WGL
Sbjct: 81  TITAISDLKNKGFKLYGTTLNSESVDYRNFD-------------YSQNTCFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +NE I++ +  I  P+  +  SLN+S A  ++++E +   
Sbjct: 128 SNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167


>gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320]
 gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
 gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 367

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCV--IDSVRVFSNLKEA 80
             N+G + R+  +F +    +++P        A  R++   A+ +  ID+      L++ 
Sbjct: 229 PHNVGAIMRSCAHFGVKG--VISPDSSVLESGAAVRTAEGGAEYIQGIDADNFAQTLEQF 286

Query: 81  I-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             A    +  TT+ ++ +                +    + + +I G+E+ GL++  +  
Sbjct: 287 KQAGYTLV--TTSSHKGSVP------------LAKAQLPEKMVLILGQEKDGLSDSTLKQ 332

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  I         SLN+S A  +++ E    
Sbjct: 333 GDMSIYIGGTGHIESLNVSVASGVLLAEWWRQ 364


>gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 223

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 21/160 (13%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +LV+      N+  + R      + +   ++  +   +  + +  +     +++     N
Sbjct: 24  VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              AI+DL      +Y TT  + +                      QN   + G E+WGL
Sbjct: 81  TITAISDLKNKGFKLYGTTLNSESVDYRNFD-------------YSQNTCFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +NE I++ +  I  P+  +  SLN+S A  ++++E +   
Sbjct: 128 SNELISMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167


>gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       N+G   R+     +  + +   R    +  A+  +  A   +  +RV +  
Sbjct: 99  ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 156

Query: 78  KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      A T R     N   V    EA   L +    G  + ++ G E  G+   
Sbjct: 157 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGMRRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + +IS P+     SLN+S A  + ++E +   
Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 247

 Score = 58.5 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L + +   N+G + R         + +   R    +     +S  A   I   RV +   
Sbjct: 100 LDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAR 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + E      +I  T A+   +++              R      +G++ G E  G+   
Sbjct: 160 TIDELKEKGVWIAGTDAKGSEDYR--------------RFDGTMPLGLVIGSEGKGMGRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                + +I  P+     SLN S A  L+++E   
Sbjct: 206 IRDKCDFLIHLPMAGHVTSLNASVAAALLMYEVYR 240


>gi|260902542|ref|ZP_05910937.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308109724|gb|EFO47264.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
          Length = 227

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+  + R      L ++        WP        +SA A   ++ V   ++++ AI 
Sbjct: 30  PNNVSAIIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VETHNSIETAIT 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G + +   L++ 
Sbjct: 84  EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +E   P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178


>gi|260889011|ref|ZP_05900274.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254]
 gi|260861071|gb|EEX75571.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254]
          Length = 157

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 39/170 (22%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L++P++  N G + R     N   T+L L+ P      +K    +         V++F
Sbjct: 7   IVLLNPEIHVNTGNIGRTCVLTN---TKLHLIKPLGFELDDKKIKRA--GLDYWKDVQLF 61

Query: 75  ----------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                      N++   ++    +ATT   +                   +    N  I+
Sbjct: 62  VWENWEHFWQENIEN--SNAKIYFATTKTKQRYT---------------DVKFNDNDYIM 104

Query: 125 FGRERWGLTNEEIAL---SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           FG E  G+  E +     SN  I+ P+ PL  SLN+S AV ++++E +  
Sbjct: 105 FGPESRGIPEEILNKYKESN--ITIPMLPLGRSLNLSNAVAIVLFEALRQ 152


>gi|156972948|ref|YP_001443855.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524542|gb|ABU69628.1| hypothetical protein VIBHAR_00626 [Vibrio harveyi ATCC BAA-1116]
          Length = 227

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP +      +SA A   ++ V    +++ AI 
Sbjct: 30  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VDTHDSIETAIT 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G + +   L++ 
Sbjct: 84  EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +     +E   P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYEREESALP 178


>gi|153837870|ref|ZP_01990537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|149748733|gb|EDM59578.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
          Length = 231

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP        +SA A   ++ V   ++++ AI 
Sbjct: 30  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLTHTSAGARNWVE-VETHNSIETAIT 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G + +   L++ 
Sbjct: 84  EL---------KAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLADQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +E   P
Sbjct: 135 DIIIPMIGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178


>gi|157164272|ref|YP_001466038.1| RNA methyltransferase [Campylobacter concisus 13826]
 gi|112801236|gb|EAT98580.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter concisus
           13826]
          Length = 226

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 24/153 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76
           +L       NIG +AR+ +      L +V        +    SS+ A   I    +F + 
Sbjct: 87  VLYGISDVGNIGAIARSAYALGCEGLVIV--TKSVNMQGVLRSSSGAAYEIPIA-IFEDG 143

Query: 77  ---LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              L E +    F +YAT +                  + E  F+G+   ++ G E  G+
Sbjct: 144 LSLLNE-LKQCGFRLYATAS--------------NGKNIKEMKFAGKR-ALVMGSEGEGI 187

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
             + +A  +  +   +   + SLN+S A  ++ 
Sbjct: 188 PQKALAKCDECVGIKLKDGWDSLNVSAAFAIIC 220


>gi|91975781|ref|YP_568440.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB5]
 gi|91682237|gb|ABE38539.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB5]
          Length = 150

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 25/164 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
            I L  P + +N G + R     NL +  ++ P     S++    +      +D V +  
Sbjct: 2   RIALYQPDIPQNTGTLLRFCACLNL-EAHIIEPAGFPTSDRHFRRA--GMDYLDQVTILR 58

Query: 74  FSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             +  + +     AD   I  TT          L  +  +  +           ++ GRE
Sbjct: 59  HDSWSKFVQWRKEADCRVILLTT----KGVTPYLEQRYQSTDV-----------LLLGRE 103

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+ +E  A ++A +  P+ P   SLN++ A  L+V E +  +
Sbjct: 104 SAGVPDEVAAAADARVLIPMQPKMRSLNVAMAAALVVGEALRQT 147


>gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 269

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R+    ++    LV+PR G P   ++   S      +   R+ S   +L + + 
Sbjct: 132 NVGAIFRSAAALDI-DAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWPQDL-QVLK 189

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A                  A    +R+       ++ G E  G++ E +A  + 
Sbjct: 190 DHGFTVA----ALELTGDARDVDAVAATNPDRL------ALVLGTEGAGMSPETLAAVDL 239

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
            +  P+     SLN++ A  +  WE  
Sbjct: 240 AVKIPMRNGVDSLNVAAASAVAFWELR 266


>gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 247

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L + +   N+G + R         + +   R    +     +S  A   I  VRV +   
Sbjct: 100 LDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMAR 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + E      +I  T A+ + +F+ +                   +G++ G E  G+   
Sbjct: 160 TIDELKERGVWIAGTDAKGKQDFRQM--------------DGTMPLGLVIGSEGKGMGRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                + +I+ P+     SLN S A  L+++E   
Sbjct: 206 IRDKCDFLINLPMAGHVTSLNASVAAALLMYEVYR 240


>gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02]
 gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18]
 gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140]
 gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1]
 gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae 35/02]
 gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae SK-92-679]
 gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae 35/02]
 gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae SK-92-679]
          Length = 250

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R      +    ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P               + 
Sbjct: 147 AETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYHCNLPD--------------SA 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + ++S P+     S+N+S +  +++ E     ++ ++K
Sbjct: 193 AWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQRVLKNKK 249


>gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4]
          Length = 246

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G + R         + +   R    +     +S  A   I   RV +    + E  
Sbjct: 105 PHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLSQTIDELK 164

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               ++  T A+ + +++ +               +   + ++ G E  G++       +
Sbjct: 165 ERGIWVTGTDAKGKQDYRQM--------------DASMPLCLVIGSEGKGMSRLVKEKCD 210

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++  P+     SLN S A  L+++E   
Sbjct: 211 FLVQLPMRGHVTSLNASVAASLLLYEVHR 239


>gi|254446077|ref|ZP_05059553.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198260385|gb|EDY84693.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 273

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 20/157 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R+     +  +   +      +  A  SS     +     V ++  E I 
Sbjct: 129 EKPGNLGTILRSADAAGVDAVICCDSVTDLFNPNAVRSSTG--VLFSMPTVTASSDEVIK 186

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            +        ATT                   L         + I+ G E++GL+ + ++
Sbjct: 187 WIRQKGIRTIATT--------PHTDILYTDTDLR------GPLAIVMGSEQFGLSEKWLS 232

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             +  +  P+     SLN++ A L+ ++E +      
Sbjct: 233 ACDTKVLIPMAGQADSLNVAMATLITLFEAVRQRPSP 269


>gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens
           TC1]
 gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           aurescens TC1]
          Length = 330

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 23/170 (13%)

Query: 13  KGPVII-LVDPQLGENIGMVARAMWNF---NLTQLRLVNP--RDGWPSEKARSSSANADC 66
             P+ + L       N+G + R++  F         +V P  R    +  A  +SA A  
Sbjct: 177 NAPIFVALDGITDPRNLGAIIRSVSAFSGHG----VIV-PERRSVGVTASAWKTSAGAAV 231

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIF 125
            +   R  +NL  A+             +N    VL       V L +   + + V I+ 
Sbjct: 232 RVPVAR-AANLNNALKQF----------KNMGIYVLGLDGDGDVSLPDLTVATEPVCIVV 280

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           G E  GL+       + I+S P++    SLN S AV + ++E      V 
Sbjct: 281 GSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEVSRQRAVK 330


>gi|170699888|ref|ZP_02890918.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria
           IOP40-10]
 gi|170135210|gb|EDT03508.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria
           IOP40-10]
          Length = 260

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 18/169 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
             L        ++L   Q   N+G + R+     +       P   +  S K   S   A
Sbjct: 105 QPLPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMGA 163

Query: 65  DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             ++    +  +++ +A+A                  V                   V  
Sbjct: 164 HFLLS---IHEDVEPDALAG------------RLDVPVALTDSHGTQAVYDCDLAGPVAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 209 VFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301]
 gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301]
          Length = 261

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 19/155 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        S KA      A  V+  V   + + E   
Sbjct: 122 QDPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQGAQFVLPIVERANLIAELDN 181

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                YAT     + +   L                Q    + G E  GL  + IA ++ 
Sbjct: 182 FNGNSYATAMHGESLYAQDLT---------------QATAFVIGNEGAGLRKQTIAAADK 226

Query: 143 IISFPVNPLFP----SLNISQAVLLMVWECMENSI 173
            I+ P+         SLN   A  + ++E    ++
Sbjct: 227 SITIPMTESQFGSVESLNAGAAAAICLFERKRQAL 261


>gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
           E3_33 E1]
 gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
           E3_33 E1]
          Length = 278

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 29/180 (16%)

Query: 8   LQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
           L   A GP ++  L   Q   N+G V R       +   LV P+D     +     +SA 
Sbjct: 117 LDQLAGGPALVILLDRCQDPHNLGSVIRTAEAAGASA-VLV-PKDRSVRLTGTVVKASAG 174

Query: 64  AD------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           A        V++  R   +LKEA     ++      +                   ++  
Sbjct: 175 AALRFPVISVVNVKRALDDLKEA---GFWVVGLAGESSEP--------------LGKLAW 217

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            Q   +  G E  GL        + +   P++    SLN   A  L  +E       S +
Sbjct: 218 DQRTVLAVGAEGTGLAELTRKSCDFLARIPMSGQAESLNAGVAAALGAYEWARRFHFSGD 277


>gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 280

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 3/151 (1%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L + +   N G V RA        + L        S K   S+A +   +  V     L
Sbjct: 124 VLSNVRDPGNAGAVIRAADAAGADLVVLTTNSVDIHSPKVVRSTAGSLFHLPVVTGVP-L 182

Query: 78  KEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNE 135
            + +A L      T A +      +    + A    E +     +   +FG E WGLT +
Sbjct: 183 DQVVAALSAHGLQTLAADGVGTHDLDELLDVAGSAPEGVPDLAAHSAWVFGNEAWGLTED 242

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E  L++A++  P+  L  SLN++ A  + ++
Sbjct: 243 ERGLADAVVRVPIRGLAESLNLATAATVCLY 273


>gi|32472821|ref|NP_865815.1| SpoU rRNA methylase family [Rhodopirellula baltica SH 1]
 gi|32444058|emb|CAD73500.1| spoU rRNA Methylase family [Rhodopirellula baltica SH 1]
          Length = 177

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 58/173 (33%), Gaps = 23/173 (13%)

Query: 7   QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            L  S + P  ++L  P++ +N G + R        +L +V P      EK    +   D
Sbjct: 17  SLPLSVQPPAHVVLYQPEIPQNTGNIGRTCVAVG-AKLWIVEPASFQFDEKRLRRA-GLD 74

Query: 66  CV----IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                  + V  +  L E               R N +      + A             
Sbjct: 75  YWQYLDWEPVPSWDALCE---------------RLNPERFFFFSKFAKRTVWEAEFALGD 119

Query: 122 GIIFGRERWGLTNEEIALSN-AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++FGRE  GL    +   +   +  P+     SLN+S    + ++E    +I
Sbjct: 120 VLVFGRETSGLPASILKPDDPRSLRLPMREQVRSLNLSVTAGIALYEHQRQTI 172


>gi|300790280|ref|YP_003770571.1| tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32]
 gi|299799794|gb|ADJ50169.1| putative tRNA/rRNA methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 268

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
           R R    +   P+  +I L   R  +   V ++FG E  GLT   +A ++  +  P+   
Sbjct: 188 RARGFAVAAFTPRPGSIPLAALREHAPGRVALLFGAEGPGLTETALAAADHAVRIPMPAG 247

Query: 152 FPSLNISQAVLLMVWECMEN 171
             SLNI+ A  +  +E    
Sbjct: 248 VDSLNIATAAAVAFYELARG 267


>gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
          Length = 278

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 11/174 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
            Q  A   ++IL   Q   N+G + RA     +T + + +      + K   S+  +   
Sbjct: 116 TQEKAPAQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYR 175

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +  V    +L  A+           R +     + A         ++     + G + G 
Sbjct: 176 VPFV-YVEDLAGAVR----------RVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGN 224

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           E  GL++E   L++A I  P+     SLN + A  ++++E            + 
Sbjct: 225 EANGLSDETAELADAYIKIPMLGKVESLNAAVAASILMYETARQRRNGKGHKID 278


>gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
           342]
 gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
 gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
           342]
 gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
          Length = 243

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                   V +  R    L+EA     +I  T                 A     +    
Sbjct: 146 AENVPLIRVTNLARTMRLLQEA---NVWIVGTAG--------------EADHTLFQSKMT 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 252

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 17/148 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   NIG + R    F +  + L +      S K   S+  +   I   +V+S++   + 
Sbjct: 122 KDPGNIGTIIRTSEAFGIDGVLLSSECAELYSPKVVRSTMAS---IFRTKVYSDIN--LM 176

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D+          RN FK + A       + E+      + ++ G E  G++ E + + + 
Sbjct: 177 DI----------RNGFKIICA-DLKGKNIREKTDWDDTI-VVIGSEAQGVSKEILEICDE 224

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            +  P++    SLN + A  L ++E  +
Sbjct: 225 AVLIPMDKNIDSLNAAVAASLFMYEMTK 252


>gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 314

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 16/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       N+G V R+   F    + +   R    +  A  +SA A   +   RV +
Sbjct: 167 IVMLDGVTDPRNLGAVIRSASGFGAHGVVIPERRAAQITAAAWKTSAGAAARVPVARVTN 226

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               LKE   +   +    A             +  + L         V ++ G E  GL
Sbjct: 227 LTRTLKELQEEGLMVIGLAA-------------DGDVELPSSQMLDGPVVVVIGSEGKGL 273

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + ++S P++    SLN   A  + ++      
Sbjct: 274 SRLVGETCDELVSIPMSTGLESLNAGVAAGIALYAIARQR 313


>gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           schoenbuchensis R1]
          Length = 279

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 33/173 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65
           I L   +   N+G + R         + L+       S +   ++  +            
Sbjct: 128 IALDRVRDPGNLGTIIRTADAVGAKGVMLIGETTDPFSPETVRATMGSIFSVPLYRFSES 187

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++    F            I  T  +   +++SV                   + ++ 
Sbjct: 188 AFLNWSTHFK---------GIIIGTHLKTSVDYRSVD-------------LKKGPIILLM 225

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           G E+ GL +      + ++  P N    SLN++ A  +M++E     +     
Sbjct: 226 GNEQQGLPDVLADRCDQLVRIPQNGRADSLNLAIATAVMLYEIRRPYLTLEPT 278


>gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
           5_7_47FAA]
 gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
           5_7_47FAA]
          Length = 250

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDS 70
              +++L       N+G   R           ++ P+D     +      ++ A   +  
Sbjct: 95  TPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVASGAAETVPY 152

Query: 71  VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + V +    L+E      ++  T               + A     +        I+ G 
Sbjct: 153 ITVTNLARTLRELQERGVWVIGTA--------------DEAEQDLYQADFKGPTAIVMGA 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  G+        +A++S P+     SLN+S A  + ++E +     +  K
Sbjct: 199 EGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPAK 249


>gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 294

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 64/175 (36%), Gaps = 19/175 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+       I L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 132 LKPKNNDVYIALDRVRDPGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGSVFS 191

Query: 68  IDSVRVFSNLKEAI---ADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   +V     + +    D+   +  T  +   +++++              ++ + V +
Sbjct: 192 MPLYKVTE--ADFLNWRKDISGLVVGTHLKGAVDYRTI-------------PYANKPVVL 236

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + G E+ GL +      + +   P      SLN++ A  +M++E   +++   E+
Sbjct: 237 MMGNEQQGLPDSLADTCDKLARIPQAGRADSLNLAIATGVMLYEIRRDALTLDER 291


>gi|90581394|ref|ZP_01237189.1| putative tRNA methyltransferase [Vibrio angustum S14]
 gi|90437371|gb|EAS62567.1| putative tRNA methyltransferase [Vibrio angustum S14]
          Length = 241

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 34/173 (19%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R      + ++  V P++G   +    +SA A   ++ +    ++ EA+  L
Sbjct: 30  PNNVSAIIRTADAVGVHKVHAVWPKEGM--KVLSHTSAGARNWVE-LDTHDSMVEAVQAL 86

Query: 85  H----FIYAT----TA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                 + AT    TA   R+ +  K                       II G E+ G+T
Sbjct: 87  KDQGMQVLATNLSDTAIDFRDVDYTKP--------------------TAIILGGEKNGIT 126

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E +A+++  I  P+  +  SLN+S A  L+++E       +     ++   P
Sbjct: 127 AEALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179


>gi|332295579|ref|YP_004437502.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
           narugense DSM 14796]
 gi|332178682|gb|AEE14371.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
           narugense DSM 14796]
          Length = 244

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 26/153 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVN----PRDGWPS--EKARSSSANADCVIDSVRVF--SNLK 78
           NIG VAR           LV     P+         A  +S  +   + S+ V   SNL+
Sbjct: 105 NIGAVARTAQASG-----LVGGIILPKHRSLDITPAAIKASTGS---LLSIPVVRLSNLR 156

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
             + DL          +    SV+  ++   V  + +     +  +FG E   L++  + 
Sbjct: 157 YFVKDL----------KRRGVSVIGVEKRGSVRYDMLKYDLPICCVFGSESKSLSDVFLR 206

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +  +  P++  F SLN+S A  ++++E    
Sbjct: 207 DLDQNVYIPMSNDFNSLNLSVASSILLYEIFRQ 239


>gi|315223488|ref|ZP_07865344.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314946523|gb|EFS98515.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 220

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIA 82
            N   V R    F + Q   +  R G   +   +    A   +D  R       +    A
Sbjct: 43  HNTSAVVRTCEVFGVQQAHSIEGRFGKRIDAKIAM--GAQKWVDVFRYNDTQSCIDALRA 100

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I ATT            P + A  LN+   S +     FG E+ GL+ + ++ ++ 
Sbjct: 101 QGYQIVATT------------PHKDAYFLNDFDIS-KKSAFFFGTEKEGLSQQVLSQADT 147

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
            +  P+     SLNIS AV +++
Sbjct: 148 YLKIPMVGFTESLNISVAVAIVL 170


>gi|300812741|ref|ZP_07093148.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496281|gb|EFK31396.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 185

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 24/183 (13%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71
           I+L +P++ +N G +AR     N  L    L+ P      +K    +A     +     +
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFRLDDKHLKRAALDYGGEV---EI 58

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRER 129
           R   +L+  +          A   +N +  L  K    A    +     ++   +FGRE 
Sbjct: 59  RRHDDLRAFL----------ATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRET 108

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
            GL    +   ++  +  P++    + N+S +  ++++E +        +          
Sbjct: 109 TGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168

Query: 189 KGE 191
           K +
Sbjct: 169 KDD 171


>gi|284035447|ref|YP_003385377.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
 gi|283814740|gb|ADB36578.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
          Length = 176

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 14/147 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---EAIAD 83
           N+G V R    F   +L L       P      ++  A   +    V        +  AD
Sbjct: 39  NVGSVFRTADAFRAEKLYLCGITGQPPHRDITKTALGATESVAWEHVTDVTALVKQLQAD 98

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              + A    + +   +  +P+             +    + G E  G+ +E I  ++ +
Sbjct: 99  GWLVAAVEQADGSTSLADFSPE-----------PNKPYAFVLGNEVTGVCDEVIQAADLV 147

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME 170
           +  P      SLNI+    ++ W+ ++
Sbjct: 148 LEIPQFGTKHSLNIAVTAGIICWDFLQ 174


>gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 243

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       N+G   R+     +  + +   R    +  A+  +  A   +  +RV +  
Sbjct: 99  ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 156

Query: 78  KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      A T R     N   V    EA   L +    G  + ++ G E  G+   
Sbjct: 157 ----------LARTMRMLREENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGMRRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + +IS P+     SLN+S A  + ++E +   
Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 243

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       N+G   R+     +  + +   R    +  A+  +  A   +  +RV +  
Sbjct: 99  ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 156

Query: 78  KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      A T R     N   V    EA   L +    G  + ++ G E  G+   
Sbjct: 157 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGMRRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + +IS P+     SLN+S A  + ++E +   
Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|301063433|ref|ZP_07203965.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium
           NaphS2]
 gi|300442372|gb|EFK06605.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium
           NaphS2]
          Length = 160

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 19/167 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLR--LVNPRDGWPSEKARSSSANADCVID-SVRV 73
           ++L  P++  N G +AR        QLR  L++P      +K    +   D   D  V+ 
Sbjct: 10  VVLYQPEIPANTGNIARLC---GAAQLRLHLIHPLGFSVDDKHLKRA-GLDYWPDIDVQH 65

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +N    +  +H           N +     +  A  +  +    +   ++FGRE  GL 
Sbjct: 66  HANFDAFLDGMH----------ENARLFCFSR-HASTVYPQAKVNRGDYLLFGRETLGLP 114

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             EI  +      P+     SLN+S  V ++ +  +    +    N 
Sbjct: 115 -LEIRNAYPCYRVPIWGKVRSLNLSTTVGIVSYHYLHEMGLFGAPNA 160


>gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
           At-22]
 gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
           At-22]
          Length = 243

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 57/174 (32%), Gaps = 24/174 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 86  PDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 145

Query: 65  DC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                   V +  R    L+EA     +I  T                 A     +    
Sbjct: 146 AENVPLIRVTNLARTMRLLQEA---NVWIVGTAG--------------EADHTLFQSKMT 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|326442221|ref|ZP_08216955.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 264

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
               PV++L +P+   N+G V R    F  T +      D W     R+ +      +  
Sbjct: 111 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDLDPWHPNAVRAGAG-----LHY 165

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
               + L                  +     L   +        +    +  ++FG ER 
Sbjct: 166 ATAVARLD---------------PDDLPGGPLLVLDPEGDDIRTVALPDDALLVFGSERH 210

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           G++ E  A +  ++S P+ P   S N++ +V + ++      +        E  
Sbjct: 211 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHWGGTPLAPGTPETPEHG 264


>gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 248

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  A   ++IL       N+G + R     N+  + +   R    +     +S  A   I
Sbjct: 96  EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 155

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV +    L +  +   +I+ T             P +          +   + ++ 
Sbjct: 156 PIARVTNLSQTLDKLKSRGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 200

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++       + +I+ P+N    SLN S A  ++++E   N 
Sbjct: 201 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|227501820|ref|ZP_03931869.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227077845|gb|EEI15808.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 268

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 12/169 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A ++ N     + + V      N G + R         +            K   +SA 
Sbjct: 109 SAGKILNGKPKLISVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAG 168

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   +   R   N+K+ +  L          R +   ++A      V        Q    
Sbjct: 169 SLFHVPVAR-DPNIKDVLGQL----------RKSGMQIVATAADGEVELADADLSQPTAW 217

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  GL  E +  ++  +  P+     SLN++ A  + ++E  +  
Sbjct: 218 LFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQ 265


>gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
           DSM 15981]
 gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
           DSM 15981]
          Length = 275

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 22/174 (12%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKARS 59
           P    +   A+    +L +     NIG + R  A  N       L+ P    P   +A  
Sbjct: 111 PAVEAVCRGARRIA-VLENVMNPTNIGAIFRSAAALNM---DAVLLTPACSNPLYRRAIR 166

Query: 60  SSANADC-----VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
            S           ++      +  E ++ L F  A  A +  + + +  P+  A      
Sbjct: 167 VSMGTVFQVPWTFLEGTEWPQHGMELLSGLGFKTAAMALSDESVR-IDDPRLMAED---- 221

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                 + +I G E  GL  E IA  +  +  P+     SLN++ A  +  W+ 
Sbjct: 222 -----RLALILGTEGDGLAEETIADCDYTVRIPMAHGVDSLNVAAASAVAFWQL 270


>gi|209696205|ref|YP_002264135.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|208010158|emb|CAQ80483.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 159

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 24/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-------ANADCVID 69
           I L +P++  N G + R   N     L L+ P      EK    +       A+     D
Sbjct: 4   IALYEPEIAPNTGNIIRLSANCG-ANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKD 62

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                  L+      H I+A                      +      +   ++FG E 
Sbjct: 63  YAAFLDYLENESEGEHRIFAC--------------TTKTTGHHTTPSYQKGDVLLFGPET 108

Query: 130 WGLTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL  E I        +  P+     SLN+S +V ++V+E    
Sbjct: 109 RGLPAELIEGLPMEQRVRIPMMADSRSLNLSNSVAIIVFEAWRQ 152


>gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 257

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  A   ++IL       N+G + R     N+  + +   R    +     +S  A   I
Sbjct: 105 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 164

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV +    L +  +   +I+ T             P +          +   + ++ 
Sbjct: 165 PIARVTNLSQTLDKLKSRGFWIFGTDMNG--------TPSDCW-------NTNGKLALVI 209

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++       + +I+ P+N    SLN S A  ++++E   N 
Sbjct: 210 GNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 316

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 12/163 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+L       ++ L       N+G + R++  F    + +   R    +  A  +SA A 
Sbjct: 159 PELPGI--PLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAA 216

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             I   +  +NL   + D         R    F   L   E  + L +   + + + I+ 
Sbjct: 217 ARIPVAQ-CTNLTRTLEDY--------RKAGFFVIGLDM-EGDVELPDLELANEPIVIVV 266

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           G E  GL+       + I+S P++    SLN   A  + ++E 
Sbjct: 267 GSEGKGLSRLVRETCDQIVSVPMSSAVESLNAGIATGVTLYEV 309


>gi|189346347|ref|YP_001942876.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
 gi|189340494|gb|ACD89897.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
          Length = 219

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 81/222 (36%), Gaps = 33/222 (14%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L        +++ +     N+  + R+     + ++  V+ R    +   R ++A     
Sbjct: 14  LLRRQTSLTVVMDNVNKSHNLAALVRSCDAAGIHEIHAVSRRKHIFT---RHNAAAGSSK 70

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFG 126
             ++ ++ +++              R R++   VLA       ++   I       +I G
Sbjct: 71  WVNINLYHDIESVYR----------RLRDDGMQVLAAASTEKSVDFREIDYTLPTALILG 120

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E  G++ + I+ ++  I  P+  +  SLN+S A  ++++E     ++            
Sbjct: 121 AEWDGISEDAISGADRCIGVPMFGMVESLNVSVAGAVIIYEAQRQRLLKGMYGSPAL--- 177

Query: 187 ATKGELLSFL---------DYLEI------SLEERGYFRPVE 213
            T+ ++   L         ++L         L++ G+    E
Sbjct: 178 -TQTQMNRLLFEHTYPRLSEHLHEKGIDYPRLDDDGFILSPE 218


>gi|330447150|ref|ZP_08310800.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491341|dbj|GAA05297.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 66/162 (40%), Gaps = 12/162 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R      + ++  V P++G        +SA A   ++ +    ++ EA+   
Sbjct: 30  PNNVSAIIRTADAVGVHKVHAVWPKEGM--RVLSHTSAGARNWVE-LDTHDSMVEAVQ-- 84

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   +++          + AI   E +   +   II G E+ G+T E +++++  I
Sbjct: 85  ------ALKDQGMQVLATNLSDTAIDFRE-VDYTKPTAIILGGEKNGITAEALSMADQDI 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             P+  +  SLN+S A  L+++E       +     ++   P
Sbjct: 138 IIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179


>gi|270265372|ref|ZP_06193633.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
 gi|270040776|gb|EFA13879.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
          Length = 147

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-----DSVRVFSNLKE 79
             N+G + R+  +F +  + L +P         R++   A+ +      D + V    ++
Sbjct: 10  PHNLGAIVRSCAHFGVNGVLLQDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRK 69

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A     +   TT+ ++                  +      + ++ G+ER GL++     
Sbjct: 70  A----GYTIVTTSSHKGTP-------------LAQAKLPSKMVLVLGQERDGLSDSAWQQ 112

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  +S        SLN+S A  +++ +    
Sbjct: 113 GDMSVSIGGTGKVESLNVSVATGILLADWWRQ 144


>gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
           36D1]
 gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
           36D1]
          Length = 247

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 19/159 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R         + +   R    +     +S  A   I   RV +
Sbjct: 97  ILILDELEDPHNLGSILRTADAVGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARV-T 155

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL + IA L     +I  T A    +++ +               +   + ++ G E  G
Sbjct: 156 NLSQTIAGLKQQGLWIAGTDASGTTDYRQM--------------DADLPLCLVIGSEGKG 201

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++       + +I  P+     SLN S A  L+++E   
Sbjct: 202 MSRIVKEACDFLIRLPMAGHVTSLNASVAAGLLMYEVYR 240


>gi|308181009|ref|YP_003925137.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046500|gb|ADN99043.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 170

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I L +P +  N G +AR          L L+ P      +K    +       DSV +  
Sbjct: 5   IALFEPLMPANTGNIARTCA--GTDTALHLIEPLGFKIDDKHLKRA--GLDYWDSVDITY 60

Query: 74  FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            ++L++ +A   DL+ +Y  +    +++  V           +   +G++   +FG+E  
Sbjct: 61  HADLQDFLASIPDLNQLYLVSKFAEHDYTDV-----------DYSDTGKDHYFLFGKETT 109

Query: 131 GLTNEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           GL    +       I  P +     +LN+S +  ++++E +   
Sbjct: 110 GLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQ 153


>gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
           insecticola LSR1]
 gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
           insecticola LSR1]
          Length = 251

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 23/176 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L +     ++IL       N+G   R+     +    +V P+D     +   +  ++ A 
Sbjct: 93  LADKKDPLLLILDGVTDPHNLGACLRSADAAGVHA-VIV-PKDHSAPLNATVKKVASGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +  + V +NL   +  L     +I  T              ++       +    Q++
Sbjct: 151 ETVP-LIVVTNLARTLRLLKEHNIWIVGTAG----------DAEQNLYQWKIQ----QSM 195

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            ++ G E  G+        + +IS P+     SLN+S A  + ++E      +S+ 
Sbjct: 196 ALVMGSEGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLFEVTRQRNLSNH 251


>gi|300768854|ref|ZP_07078748.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300493587|gb|EFK28761.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 175

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I L +P +  N G +AR          L L+ P      +K    +       DSV +  
Sbjct: 10  IALFEPLMPANTGNIARTCA--GTDTALHLIEPLGFKIDDKHLKRA--GLDYWDSVDITY 65

Query: 74  FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            ++L++ +A   DL+ +Y  +    +++  V           +   +G++   +FG+E  
Sbjct: 66  HADLQDFLASIPDLNQLYLVSKFAEHDYTDV-----------DYSDTGKDHYFLFGKETT 114

Query: 131 GLTNEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           GL    +       I  P +     +LN+S +  ++++E +   
Sbjct: 115 GLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQ 158


>gi|28378810|ref|NP_785702.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254557015|ref|YP_003063432.1| rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|28271647|emb|CAD64553.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254045942|gb|ACT62735.1| rRNA methyltransferase [Lactobacillus plantarum JDM1]
          Length = 170

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I L +P +  N G +AR          L L+ P      +K    +       DSV +  
Sbjct: 5   IALFEPLMPANTGNIARTCA--GTDTALHLIEPLGFKIDDKHLKRA--GLDYWDSVDITY 60

Query: 74  FSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            ++L++ +A   DL+ +Y  +    +++  V           +   +G++   +FG+E  
Sbjct: 61  HADLQDFLASIPDLNQLYLVSKFAEHDYTDV-----------DYSDTGKDHYFLFGKETT 109

Query: 131 GLTNEEIALS-NAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           GL    +       I  P +     +LN+S +  ++++E +   
Sbjct: 110 GLPEPFMRKYPEKAIRIPQDDSHIRALNLSNSAAIVIYEALRQQ 153


>gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group]
          Length = 329

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 24/174 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWP-SEKARSSSANADCVIDSV 71
           +++L   Q   N+G + R+   F    +  L    P    P +EKA  ++  A   +   
Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLL----PACCDPFNEKALRAARGAS--LQLP 222

Query: 72  RV---FSNLKEAIA--DLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            V   +S+L   +A  D+  +     ++ N +    VL+       L + + S ++V ++
Sbjct: 223 VVSGNWSDLHALMAKPDMKMLAGHPESSSNGSERTHVLS-----KELADSLMS-ESVCLV 276

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            G E  GL+ E +     +++ P+   F SLN+S A  + ++         +E+
Sbjct: 277 LGSEGNGLSAETLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQTKQQKMAER 329


>gi|330444231|ref|YP_004377217.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
 gi|328807341|gb|AEB41514.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
          Length = 266

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 21/178 (11%)

Query: 4   YAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
              +   S + PV   +I+   +   N+G + R      +  + L +P     +     S
Sbjct: 103 STQEFLASRRNPVPFYLIIEQVEKPGNVGALLRTGDGVGVDGVILCDPIVDLYNPNVIRS 162

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S      +    + ++L E +  +        R  +    V +P+   +   E   +   
Sbjct: 163 SLGTVFTLP--VLCASLPEVLQLI--------RKESWEVYVTSPRAKKLYFEETFLA--P 210

Query: 121 VGIIFGRERWGLTN---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             I+FG E+ GL      E       I+ P+     SLN+S +V  + +E +   +VS
Sbjct: 211 TAIVFGSEKDGLMQPWFHERFK---EITLPMRGKADSLNLSTSVAAIAYEVLRQRMVS 265


>gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 276

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 22/177 (12%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L N  + P +++L       N+G   R      +    ++ P+D     +      +  A
Sbjct: 115 LDNLREPPFLLVLDGITDPHNLGACLRTADAMGVH--AVIAPKDKSAGLNATVSKVACGA 172

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L E      +I  T     ++      P               +V
Sbjct: 173 AETVPYITVTNLARTLCELKEYGIWIIGTDTGGESDLYHTDLPD--------------SV 218

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + G E  G+        + +++ P+     S+N+S +  +++ E     ++ +E 
Sbjct: 219 AWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGMVLGETRRQRVLRAEA 275


>gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 267

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 24/158 (15%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P+   NIG + R     N+  + + NP+    +     SS      +       +  E I
Sbjct: 125 PEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIAT--GSTTEVI 182

Query: 82  ADL------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             L       +  A TA     FK               +   +   I+ G E  GLT E
Sbjct: 183 DFLKAKGINSYCAALTA-----FKPYY-----------EVSFEEASAIVVGTEDQGLTEE 226

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  S   I  P+  +  S+N+S A  ++++E     +
Sbjct: 227 WLTHSTQNIIIPMEGVIDSMNVSVAAAVLIFEAKRQRV 264


>gi|23013325|ref|ZP_00053233.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 103

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            VI + +  ++LK  + D H I  T   +      VL               G+ + ++ 
Sbjct: 9   EVIRAQKFVASLKR-LRDSHRIVGTALGSGKPVAEVLN------------RPGKPIALLL 55

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  GL    +A  + I++ P +    SLN++    +++ E  +
Sbjct: 56  GNEEDGLPPATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAK 100


>gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
 gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
          Length = 266

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 32/175 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G V++L   Q   N+G + R+        + L        + K   S+  +   +    
Sbjct: 113 NGLVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHL---- 168

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---------- 122
               L+                 +    +   +E    L   +  GQ             
Sbjct: 169 --PVLE----------------GDLLSILPEARERGARLVTTMLEGQRSCFEYDFKGTSW 210

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           I+ G E  G++ E  AL +  I  P+     SLN + A  ++++E +     ++E
Sbjct: 211 IVIGSEGRGVSPEVAALVDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYAAE 265


>gi|238755721|ref|ZP_04617055.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
           ATCC 29473]
 gi|238706088|gb|EEP98471.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
           ATCC 29473]
          Length = 372

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           LQ + K   +  L +     N+G + R   +F +  + L +P         R++   A+ 
Sbjct: 216 LQQAPKQDCVLALEEVGNPHNLGAIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEH 275

Query: 67  VID-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           +   +   F ++ +   +  +   TT+ ++                  +      + ++ 
Sbjct: 276 IKAINADDFLSVLDTFRNAGYTIVTTSSHKGTS-------------LSKAELPAKMVLVL 322

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           G+E  GLT+      +  +S        SLN+S A  +++ E    +   
Sbjct: 323 GQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQ 372


>gi|219683722|ref|YP_002470105.1| rRNA methylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621372|gb|ACL29529.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 292

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N G V R+        + LV       + K   ++  +   +    V +  + A  DL
Sbjct: 139 PGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLP---VLAMDERAFFDL 195

Query: 85  -----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  + A           V  P     +L  R     +  ++FG E  GLT E +  
Sbjct: 196 CRERDTTVLAADVYGTEGKPPVSLPD----LLRNRELVEGSKAVLFGNEARGLTTELLDE 251

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMV 165
               +S P+     SLN+  +  +M+
Sbjct: 252 CAMSVSIPIYGKAESLNLGTSAAVML 277


>gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
           16992]
          Length = 333

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 172 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 231

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI         + + R  +   L     A ++ E  F    + ++ G E  
Sbjct: 232 ARVV-NLTKAIE--------SLKERGYYSVGLDGGGDA-LVGETGFETDPLVVVLGSEGN 281

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL+       ++I   P++ +  SLN S A  + ++
Sbjct: 282 GLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi
           ATCC 51908]
 gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC
           51908]
          Length = 245

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 27/164 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVI------D 69
           IL       N+G   R      +    +V PRD     +      +  A  V+      +
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGAAEVVPLFQVTN 158

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R   +L+E    +  + A    + + +K+ L                  + I  G E 
Sbjct: 159 LARTMKSLQE--KGVWIVGAAGEADSDLYKTDL---------------KGPLAIAMGAED 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            GL        ++I S P+     SLN+S A  + ++E +   +
Sbjct: 202 KGLRRLTRESCDSIASIPMAGSVSSLNVSVATGICLFEAVRQRL 245


>gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 245

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 7   QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           +L ++  GP  ++IL       N+G   R           ++ P+D     +  A   S+
Sbjct: 86  ELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAH--AVIAPKDRAVGLNATAMKVSS 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    +++      +I  T+              +A   L E  F+G 
Sbjct: 144 GASDTVPYITVTNLARTMRDLKERGVWIIGTS-------------DDAEKGLYEGDFTG- 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              ++ G E  G+        + +++ P+     SLN+S A  + ++E     +
Sbjct: 190 PTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQRL 243


>gi|298571690|gb|ADI87842.1| hypothetical protein AKSOIL_0334 [uncultured bacterium Ak20-3]
          Length = 272

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 1   MTPYAPQLQNS--AKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEK 56
           M P    L++    + P ++L++  +   N+G + R      +    LV   +    +  
Sbjct: 103 MKPKLKALEDFPVKQNPFLLLIESVEKPGNLGALLRTADGSGVDG-VLVLESQIDLYNPN 161

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
              SS      +       + +EA A       A  A   +N                  
Sbjct: 162 VIRSSLGCCFSLPIAMC--SREEAYAFCKERKIAIHAAVLSNASVYYDTVNYPS------ 213

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               +  I+ G E  GL    ++ +N +IS P++    SLN+S A  ++++E     
Sbjct: 214 ----STAILLGSEDKGLDPYWVSHANHLISIPMHGEADSLNVSAAGAVLLYEVSRRR 266


>gi|183601746|ref|ZP_02963116.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241190756|ref|YP_002968150.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196162|ref|YP_002969717.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219352|gb|EDT89993.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249148|gb|ACS46088.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250716|gb|ACS47655.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793745|gb|ADG33280.1| rRNA methylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 301

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N G V R+        + LV       + K   ++  +   +    V +  + A  DL
Sbjct: 148 PGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLP---VLAMDERAFFDL 204

Query: 85  -----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  + A           V  P     +L  R     +  ++FG E  GLT E +  
Sbjct: 205 CRERDTTVLAADVYGTEGKPPVSLPD----LLRNRELVEGSKAVLFGNEARGLTTELLDE 260

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMV 165
               +S P+     SLN+  +  +M+
Sbjct: 261 CAMSVSIPIYGKAESLNLGTSAAVML 286


>gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
 gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
          Length = 248

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 23/176 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
            L+       +IL       N G + R      +    +V  + G P S  A  +SA A 
Sbjct: 90  TLETETTPLFLILDQISDVRNFGAILRTAECTGVHA-VIVQKKGGAPVSGDAVKTSAGAI 148

Query: 66  CVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             I  ++V  ++K+AI     + +  I AT    +  +   L                  
Sbjct: 149 FNIPIIKV-DHIKDAIFYLQGSGVTTIAATEKSEKTIYDQTLT---------------TP 192

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           V I+ G E  G++   + L +   S PV     SLN+S A   +++E +   I  +
Sbjct: 193 VAIVMGSEGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLYEIVRQRITKA 248


>gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 250

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 58/178 (32%), Gaps = 30/178 (16%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVAR----------AMWNFNLTQLRLVNPRDGWP 53
                   ++G V++L       N+G + R           M             +D   
Sbjct: 92  ALEDALEKSRGTVLLLDQVTDPRNVGAILRSAAAFGAAAVVM-------------QDRNA 138

Query: 54  SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
             +  + +  A   +D+V V         +++     T   +  +  +     A   L  
Sbjct: 139 PPETGAMARAAVGALDTVPVV-------REVNLARTITVLQKAGYWVMGLDGTAKTELAA 191

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + +   ++ G E  GL   +    + ++  P+ P   SLN+S A  + ++E    
Sbjct: 192 AKPTDRPAALVLGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAAIALYELSRG 249


>gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
 gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
          Length = 271

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 59/181 (32%), Gaps = 26/181 (14%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           M  +A +        ++ L   Q   N+G V R      +T   L       P S KA  
Sbjct: 109 MPGFAVEAPEEDPVLMVALDGIQDPGNVGAVLRVARAVGVTG-VLCGEDTADPFSPKAVR 167

Query: 60  SSANADCV--IDSVRVFSNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
           SS  A     I   R+ + + E     +  +        R      ++            
Sbjct: 168 SSMGAAFTVPIRQGRLVNMIGEWHAKGVEPVETAVGEGVRYDRWNWNI------------ 215

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                  V I+ G E  G++ E   L    +  P+     SLN++ A  L+++E   +  
Sbjct: 216 ------PVMIVLGNEGRGISPEVRHLCRGKVHIPMPGGGESLNVAVAAALLLYEARRHRG 269

Query: 174 V 174
            
Sbjct: 270 A 270


>gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
           odorifera DSM 4582]
 gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
           odorifera DSM 4582]
          Length = 243

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 24/174 (13%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L  S   P +++L       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PGLLESVDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +  +RV +    L+  + +L+ ++  T                 A     +    
Sbjct: 144 GAAENVPLIRVTNLARTLR-LLQELNVWVVGTAG--------------EADHTLYQSKMT 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++ G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 189 GPMALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
           XCL-2]
 gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
           XCL-2]
          Length = 244

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 17/177 (9%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           T     L+  +    + L + Q   N+G + R      +T + +        +   R  +
Sbjct: 82  TDLKALLEAESNPLFLFLDEVQDPHNLGAILRTADATGVTAVVIPKHNSVGVNATVRKVA 141

Query: 62  ANADCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A   +  V    +   +KE      ++                  E    L +  F G
Sbjct: 142 CGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAG-------------ETNTTLYQLDFKG 188

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             VG++ G E  GL        + + + P+     SLN+S A  ++++E     + S
Sbjct: 189 A-VGLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLYEVYRQRLQS 244


>gi|294013040|ref|YP_003546500.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S]
 gi|292676370|dbj|BAI97888.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S]
          Length = 156

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 21/171 (12%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN---PRDGWPSEKARSSSANADCVI 68
           A+G  I L  P++  N+G + R    F++     V+   P     S+     +  A    
Sbjct: 2   ARGMRIALYQPEIAGNVGAILRLAACFSVP----VDIIMPTGFAFSDAKLKRA--AMDYG 55

Query: 69  DSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            S  V   +N +          A   R R   + ++     A      +    +  ++ G
Sbjct: 56  ASADVTRHANFE----------AFDVRRRAEGRRLMLMSSHASQRLPDVEFRADDILLMG 105

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E  G+ N    L++  +  P+ P F SLNI+ +  + V E +  +    +
Sbjct: 106 SESAGVPNAVRDLADVRVRIPMAPGFRSLNIAVSTGIAVAEALRQTGSFPQ 156


>gi|293401528|ref|ZP_06645671.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305166|gb|EFE46412.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 169

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 15/167 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFS 75
           +L +P++ +N G + R     N T+L L+ P  G+  ++A    A  D +  +D  R++ 
Sbjct: 5   VLYEPEIPQNTGNMMRTCMATN-TKLHLIQPL-GFSLDEAHLRRAGMDYMKELDY-RLYE 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N  +          T     NN+  +    + A    +      ++ ++ G+E  G+   
Sbjct: 62  NWDDF---------TKQNPSNNYYYMTRYGKQAPSQIDFTQCEGDIYLVLGKESTGIPKA 112

Query: 136 EIA-LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            +A   +  +  P+     SLN+S    ++V+E +          V+
Sbjct: 113 ILAKQLDHCMRLPMVANARSLNLSNCAAIIVYEVLRQLDYPGLSPVE 159


>gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           sputigena Capno]
 gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           sputigena Capno]
          Length = 245

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 23/153 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSNLKEAIADL 84
           N G + R      ++ + +  P+ G  S  A    +SA A   +   +V  NL +A+  L
Sbjct: 110 NFGAIIRTAECTGVSGIII--PKRGSVSITADTVKTSAGAVFRVPICKV-ENLVDAVYYL 166

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 + ATT         +L  ++  +             I+ G E  G++   + + 
Sbjct: 167 QGSGIRVVATT----EKTNQLLYAEDFTV----------PTAIVMGAEDVGVSPAVLKVV 212

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++    P+     SLN+S A  + ++E ++  +
Sbjct: 213 DSKAKLPMVGDISSLNVSVACAVFLYEVVKQRL 245


>gi|212715739|ref|ZP_03323867.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661106|gb|EEB21681.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
           16992]
          Length = 290

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 18/160 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--------DSVRVFSN 76
             N G V R+      + + LV+      + K   S+A +   +        D       
Sbjct: 140 PGNAGTVIRSADAAGCSAVVLVDDCVDMFNPKVVRSTAGSLFHLPILTMGTDDFFAWCDT 199

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            + A+     +Y T +R   +   V+A  E                ++FG E  GLT E 
Sbjct: 200 HELAVYAAD-VYGTDSRQPESLTDVIAMPETLA---------GAKAVLFGNEARGLTKEV 249

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  ++ I+S P+     SLN+  +  +M+     +S V  
Sbjct: 250 LERTDRIVSIPLYGKAESLNLGTSSSVMLLSLAMSSHVER 289


>gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group]
 gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group]
 gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 340

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 24/174 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWP-SEKARSSSANADCVIDSV 71
           +++L   Q   N+G + R+   F    +  L    P    P +EKA  ++  A   +   
Sbjct: 180 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLL----PACCDPFNEKALRAARGAS--LQLP 233

Query: 72  RV---FSNLKE--AIADLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            V   +S+L    A +D+  +     ++ N +    VL+       L + + S ++V ++
Sbjct: 234 VVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLS-----KELADSLMS-ESVCLV 287

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            G E  GL+ + +     +++ P+   F SLN+S A  + ++         +E+
Sbjct: 288 LGSEGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQTKQQKMAER 340


>gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           KT2440]
          Length = 248

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 21/173 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66
           +      +++L       N+G   R       T   +V P+D     +   R  +  A  
Sbjct: 92  RTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVACGAAE 149

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           VI  V V +    L++      ++  T               EA   + ++  +G  V +
Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-M 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I G E  G+        + ++  P+     SLN+S A  + ++E +    V  
Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQVKR 248


>gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group]
 gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group]
          Length = 329

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 24/174 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWP-SEKARSSSANADCVIDSV 71
           +++L   Q   N+G + R+   F    +  L    P    P +EKA  ++  A   +   
Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLL----PACCDPFNEKALRAARGAS--LQLP 222

Query: 72  RV---FSNLKE--AIADLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            V   +S+L    A +D+  +     ++ N +    VL+       L + + S ++V ++
Sbjct: 223 VVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLS-----KELADSLMS-ESVCLV 276

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            G E  GL+ + +     +++ P+   F SLN+S A  + ++         +E+
Sbjct: 277 LGSEGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQTKQQKMAER 329


>gi|87303170|ref|ZP_01085968.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 5701]
 gi|87282337|gb|EAQ74297.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 5701]
          Length = 229

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 62/188 (32%), Gaps = 20/188 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L        ++L       N+  + R+     + +  +V+ +    +  + +  +     
Sbjct: 15  LDRRMADLTVVLEAVDKPHNLSAILRSCDAVGVLEAHVVSLKGRPRTFNSTAQGSQKWVP 74

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   R    ++E +  L      +Y T           +  ++                 
Sbjct: 75  L---RPHERVEEVLGQLKQQGFRLYGT-----QLGTDAVDYRQCDFT--------GPTAF 118

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           + G E+WGL+    A+ +  +  P   +  SLN+S A  ++++E +             +
Sbjct: 119 LLGAEKWGLSEAAAAMVDQALFIPTGGMVQSLNVSVAAAVLLFEALRQRQAEGLVPEAGE 178

Query: 184 NTPATKGE 191
             PA   E
Sbjct: 179 GLPAGARE 186


>gi|227875350|ref|ZP_03993492.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269976366|ref|ZP_06183358.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|306818665|ref|ZP_07452387.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700709|ref|ZP_07637734.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris
           FB024-16]
 gi|227844255|gb|EEJ54422.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269935437|gb|EEZ91979.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|304648351|gb|EFM45654.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307613704|gb|EFN92948.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris
           FB024-16]
          Length = 153

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 18/153 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +I   P++  N G   R       T L +V P      +     +      +  ++   +
Sbjct: 4   VIFYQPRIAGNTGAAIRLAACTGAT-LHVVEPTVFDFEDTKLKRAGLDYHDLAHLQRHPD 62

Query: 77  LKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L +  A +   IYA T        SV                     ++FG E  GL   
Sbjct: 63  LDDCFAAIPGKIYAFTGHTEVMLPSVHF--------------QDGDALMFGPEDTGLPVP 108

Query: 136 EIA--LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +      + +  P+     SLN++ +  + ++
Sbjct: 109 VMDDPRVTSRVRIPMLEGRRSLNLAISAAVGLY 141


>gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63]
          Length = 252

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 18/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L + +   N+G + R      +  + +   R    S     +SA A   +   RV +
Sbjct: 108 VVVLDEVEDPHNLGAIIRTAECAGVHGIIIPKRRSAGLSYTVAKASAGAIEYMRVARVTN 167

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L E      ++Y                       +E  FSG    I+ G E  G+
Sbjct: 168 IAVTLDELKEKGVWVYG--------------ADMDGTDYDECDFSGA-CAIVIGNEGKGI 212

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + I S P+     SLN S A  +++++ M+N 
Sbjct: 213 SRLVREKCDVIASLPMKGQINSLNASVAAGILMYKAMKNR 252


>gi|301166246|emb|CBW25821.1| putative SpoU rRNA methylase family protein [Bacteriovorax marinus
           SJ]
          Length = 268

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 14/166 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++ +      ++L + +   N+G + R      + ++ L        + K   S+   D 
Sbjct: 109 KINDEPNPIHLVLDNLRSSFNVGSLFRTAEAIGIKEVHLCGYTPTPENSKTAKSALGTDK 168

Query: 67  VIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            I      S+L   +A+ +           R         ++ A  L E +   +   I+
Sbjct: 169 WIKWSYWESSLDCIDALKE-----------RGASIYAFETEKNAKAL-EEVREIRECAIV 216

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G ER+GL    +  S+ I+   ++    SLN+     + ++    
Sbjct: 217 LGNERYGLNESVLNRSDEILKIRLDGKKNSLNVGTCGAIAMYHMAR 262


>gi|294155367|ref|YP_003559751.1| rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291600056|gb|ADE19552.1| rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 174

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL  P++  N G + R  +     +L ++ P       K       A  ++  ++    
Sbjct: 4   IILYQPEICPNTGNIIRTCFALG-AKLHIIKPTSFDLHPK-YLRRYGAGRILSDIQHEIH 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + + +    + +  Y T    R   K+            +       V ++FGRE  G
Sbjct: 62  ASYDDFENKYKNKNIFYIT----RYGLKTY-----TEQNFKKAYDQSGEVWLMFGRESTG 112

Query: 132 LTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    +    N  +  P+     S+N++  V ++ +E M  
Sbjct: 113 IDKNILHKNINNCLRIPMVSEMRSINLANCVCIVGFEVMRQ 153


>gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016]
 gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 256

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL + Q   N G + R      +  + +   R+   +     SSA A   +   +V +
Sbjct: 105 IIILDEIQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTN 164

Query: 76  --NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              + E +  +  +IY       N    V                  ++ +I G E  G+
Sbjct: 165 LNTIIEKLKKENIWIYGADMTGENYCFDVDF--------------NSSIALIIGSEGKGI 210

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +       + ++  P+     SLN S A  ++++E ++  I S 
Sbjct: 211 SKLTKQKCDKLVKIPMMGNISSLNASVAAGMLMYEILKQKIKSD 254


>gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
          Length = 280

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL + Q   N G + R      +  + +   R+   +     SSA A   +   +V +
Sbjct: 129 IIILDEIQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTN 188

Query: 76  --NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              + E +  +  +IY       N    V                  ++ +I G E  G+
Sbjct: 189 LNTIIEKLKKENIWIYGADMTGENYCFDVDF--------------NSSIALIIGSEGKGI 234

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +       + ++  P+     SLN S A  ++++E ++  I S 
Sbjct: 235 SKLTKQKCDKLVKIPMMGNISSLNASVAAGMLMYEILKQKIKSD 278


>gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 329

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 29/174 (16%)

Query: 12  AKGPVII-LVDPQLGENIGMVARAMWNF---NLTQLRLVNP--RDGWPSEKARSSSANAD 65
           A  P+ + L       N+G + R++  F         +V P  R    +  A  +SA A 
Sbjct: 175 ANAPLFVALDGITDPRNLGAIIRSVSAFSGHG----VIV-PERRSVGVTASAWKTSAGAA 229

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   R  SNL  A+        F+      + +     L              + + V
Sbjct: 230 VRVPVAR-ASNLNNALKQFKNMGIFVLGLDG-DGDVSLPDLT------------LATEPV 275

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            I+ G E  GL+       + I+S P++    SLN S AV + ++E        
Sbjct: 276 CIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRAAK 329


>gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5]
          Length = 243

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 27/183 (14%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKAR 58
           +     ++       V+I        N G +AR+        L  + P       + +A 
Sbjct: 80  LADILERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAHGL--ITPLKNSAPVNAEAI 137

Query: 59  SSSANADCVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
            SSA A   I   RV         L+        + AT               E +  L 
Sbjct: 138 RSSAGALTAIPVCRVGSIRNTVKLLQ--TEGFQIVAAT---------------EKSRKLL 180

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 +   ++ G E  G++ E + L +  ++ P+     SLN+S A  +M++E +   
Sbjct: 181 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEAVRQR 240

Query: 173 IVS 175
           I  
Sbjct: 241 IAE 243


>gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281552|gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 264

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 21/174 (12%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           TP  P          ++L   Q   N G + R+     + Q+          S K   + 
Sbjct: 106 TPEMPT-PPRLTQSAVLLDKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAG 164

Query: 62  ANADCVIDSVRVFS--NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A  +++   +F   +L + +      + AT++               A      +   
Sbjct: 165 MGAHFLLE---IFEGVDLSDLLGRADIPVIATSS--------------HAEKQLYELDLR 207

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           Q V  +FG E  G+ ++ +A +   IS P      SLN++ +  +  +E +   
Sbjct: 208 QPVAWLFGHEGQGVADDLLARATHRISIPHLGDIESLNVAASSAVCFFEQLRQR 261


>gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 277

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 14/153 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL + +   N G + RA  +     + L        + K   S+  +   I    V ++L
Sbjct: 127 ILEEVRDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPKVVRSTTGSLFHIPVA-VGADL 185

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTN 134
            E ++         AR       VLA   A   L     +GQ       +FG E  GL +
Sbjct: 186 PEVVS--------CARAAGLR--VLAADIAGEDLLAARTAGQLARPTAWVFGNEARGLPD 235

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E + L +  ++ P+     S+N++ A  + ++E
Sbjct: 236 EWLGLVDRAVAVPIYGRAESMNLATAASVCLYE 268


>gi|16125439|ref|NP_420003.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 263

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G V R         + LV       S +   ++  +   +   +  + + E +   
Sbjct: 130 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK--ATIPEFL--- 184

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  A       SV+     A V ++     +   I+ G E+ GL  E  A  +  +
Sbjct: 185 -------AWRETWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNV 237

Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
             P+     SLN+S A  +M++
Sbjct: 238 KIPMRGRADSLNLSVATGIMIY 259


>gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus K5030]
 gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AN-5034]
 gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus Peru-466]
 gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ4037]
 gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus Peru-466]
 gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AN-5034]
 gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ4037]
 gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus K5030]
          Length = 247

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 23/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L       +++L       N+G   R      +  + +   R    +      +  A  V
Sbjct: 90  LAQHETPLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEV 149

Query: 68  I------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +      +  R    L+E    + +   T                 A     +      +
Sbjct: 150 VPLIRVTNLARTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPL 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ G E  G+        + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 193 AIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAK 247


>gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
           KPA171202]
 gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
           KPA171202]
          Length = 318

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 18/173 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q    G ++ L       N+G + R+   F    + + + R    +  A  +SA A    
Sbjct: 159 QTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA---- 214

Query: 69  DSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            + RV     SNL +A+      +A T      +  V    EA   +         + ++
Sbjct: 215 -AARVPVAMASNLNQALG----KFAATG-----WMIVGLAGEADSDIAAAPGLDGPLVLV 264

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            G E  GL        + + S P++    SLN S A  + ++E     + +SE
Sbjct: 265 VGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRVSASE 317


>gi|317153991|ref|YP_004122039.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944242|gb|ADU63293.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 226

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 28/180 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-----IDSVRVFSNLKE 79
             N+  V R+   F ++ + L      WP    +SS +    +     +D+  +  NL  
Sbjct: 54  PHNVSAVLRSCDAFGVSDVHLYYTTSQWPDLGKKSSGSAMKWIRLIRHVDAATMVGNLVG 113

Query: 80  AIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                H          +A  R     V+                    II   E  G + 
Sbjct: 114 GGGSAHDGGQILRTGFSATAR----PVMDFDFTIP-----------TAIILSNEHRGTSP 158

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPATKGE 191
           E  AL    +  P+  +  SLN+S A  ++++E     + + +    +  ++   A + E
Sbjct: 159 ELAALVPDEVYIPMQGMVQSLNVSVAAAIILYEAFTQRKRAGLYDAPSFSDEELAALRAE 218


>gi|212550772|ref|YP_002309089.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549010|dbj|BAG83678.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 274

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L  S    +I+L   +   N+G + R      +    + NP     +     SS     
Sbjct: 117 DLNLSNNPLIIVLESIEKPGNLGAILRTAEAAKIDATIICNPSTDIYNPNVVRSSIGC-- 174

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +  +    ++ +E          T A  ++    + A +  A              I+ G
Sbjct: 175 LFSNPIAVASNEE----------TLAYLKSKSVQIFAAELTAFKQYYNTDFTSASAIVIG 224

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GLTN  +  ++  I  P+  +  SLN+S +V ++ +E +   
Sbjct: 225 AEVNGLTNFWLDNAHQRIKIPMQGIIDSLNVSVSVAIITFEAIRQR 270


>gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
 gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
          Length = 254

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 31/184 (16%)

Query: 7   QLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSA 62
           ++  S +GP  ++IL       N+G + R+   F      ++ P+D      A     ++
Sbjct: 91  EVLESIEGPPLLVILDGVTDPHNLGAILRSADAFGAH--AVIAPKDNAVGINATVEKVAS 148

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG- 118
            A   +  + V +    ++E      ++ A                  A +  E+  SG 
Sbjct: 149 GAADTVPYLMVTNLARTIEELKEHDIWVIA------------------ADMDGEQPLSGI 190

Query: 119 ---QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V  + G E  G+        + +   P+     SLN+S +  L ++E       +
Sbjct: 191 DVRSGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSAALCLYETARQRGHA 250

Query: 176 SEKN 179
           S + 
Sbjct: 251 STRQ 254


>gi|227509370|ref|ZP_03939419.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227512233|ref|ZP_03942282.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227524036|ref|ZP_03954085.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227084627|gb|EEI19939.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227088775|gb|EEI24087.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227191082|gb|EEI71149.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 175

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 37/171 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P +  N G +AR          L L+ P       K    +       + V++  
Sbjct: 10  IVLFEPLMPANTGNIARTCA--GTDTILDLIEPLGFKLDNKHLKRA--GLDYWNKVQINY 65

Query: 74  FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             NL E +  +      F+ +  A           PK             Q+  ++FG+E
Sbjct: 66  HQNLPEFLKTVENPKNLFLVSKFANQDYTDPDYSDPK-------------QDYYLLFGKE 112

Query: 129 RWGLT------NEEIALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
             GL       N E       I  P +     +LN+S +  ++++E +   
Sbjct: 113 TTGLPEPFMRKNPE-----KAIRIPQDDDHIRALNLSNSCAIVIYEVLRQQ 158


>gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 276

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       N+G + R+   F    L          S     +++ A   ID + V  
Sbjct: 127 VLVLDQVTDPHNVGAIMRSAVAFGADALVTTARHSPAESGVLAKAASGALEHIDHIEV-R 185

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  AI +LH     T    +     L          E+   G+ + ++ G E  GL  +
Sbjct: 186 NLANAIEELHAAGFLTVGLDSEGPQRL----------EKTLQGKKIALVLGSEGKGLRQK 235

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 A+    +     SLN+S A  + ++    +    S
Sbjct: 236 TRETVRALARLDMPGAIHSLNVSNAAAVALYIARRSLAEGS 276


>gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
           ATCC 35580]
 gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
           ATCC 35580]
          Length = 274

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 18/169 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD- 65
           +L +  K  V++L       N G + R+   F++  + L   R     +     SA A  
Sbjct: 119 ELASREKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAA 178

Query: 66  --CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              ++ +  +   ++E   +  +++   A           P                  +
Sbjct: 179 WVPLLYTANLVRTVEELKRNGFWVFGADA-QGEPLPHTKFPD--------------KTLL 223

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I G E  G++       ++  + P +    SLN+S A  ++++E     
Sbjct: 224 IMGSEGSGISRLLKTSCDSFTAIPTSGKLDSLNVSVAAGILMYEVRRQQ 272


>gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum
           DSM 180]
          Length = 247

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVF-- 74
           L + Q   N+G   R      +    ++ P+D     +      ++ A   +  V+V   
Sbjct: 103 LDEVQDPHNLGACLRTAEAVGVQ--AVIAPKDNAVGLTPVVCKVASGAAETLPYVQVTNL 160

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + +A+ +                 + A  EA+  L     +G  +G++ G E  GL  
Sbjct: 161 ARVMDALKE------------RGIWLIGAAGEASDELYAADLTG-PLGLVMGAEGSGLRR 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + ++  P+     SLN+S A  + ++E +   
Sbjct: 208 LTRERCDRLVRLPMCGQVESLNVSVAAGVCLYEALRQR 245


>gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
 gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
          Length = 246

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 22/163 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           + IL + +   N+G + R   N      + +   R    +     +SA A       +V 
Sbjct: 100 IFILDEIEDPHNLGAIIRT-ANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVT 158

Query: 75  S---NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    ++E     L F+ A                +        +     +G++ G E  
Sbjct: 159 NISQTIEELKKQGLWFVCA----------------DMGGETMYNLNLKGPIGLVIGNEGN 202

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G++       + I S P+     SLN S A  ++ +E +   +
Sbjct: 203 GVSRLVKDKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQRL 245


>gi|254392368|ref|ZP_05007551.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197706038|gb|EDY51850.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 268

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
               PV++L +P+   N+G V R    F  T +      D W     R+ +      +  
Sbjct: 115 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDLDPWHPNAVRAGAG-----LHY 169

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
               + L                  +     L   +        +    +  ++FG ER 
Sbjct: 170 ATAVARLD---------------PDDLPGGPLLVLDPEGDDIRTVALPDDALLVFGSERH 214

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           G++ E  A +  ++S P+ P   S N++ +V + ++      +        E  
Sbjct: 215 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHWGGTPLAPGTPETPEHG 268


>gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 249

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+I IL +     N G + R     N+T + +   R    +     +S  A   +   
Sbjct: 99  ENPLILILDELNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIA 158

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV +    L +      +++ T                     ++   +G  + +I G E
Sbjct: 159 RVTNLSQTLDKLKEQGFWVFGT--------------DMNGTPSHKWNTAG-KLALIIGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++       + +I+ P+N    SLN S A  ++++E   + +
Sbjct: 204 GKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRHKV 248


>gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568]
 gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568]
          Length = 366

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 64/171 (37%), Gaps = 22/171 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  AK  V+ L +     N+G + R+  +F +  + L +P         R++   A+ + 
Sbjct: 213 EAPAKDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDPAVLESGAAVRTAEGGAEHIK 272

Query: 69  -----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                D + V    ++A     +   TT+ ++                  +      + +
Sbjct: 273 AINADDFLSVLDTFRKA----GYAIVTTSSHKGTP-------------LAQAKLPAKMVL 315

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + G+ER GL++      +  +S        SLN+S A  +++ +    +  
Sbjct: 316 VLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLADWWRQNQA 366


>gi|255323955|ref|ZP_05365081.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           tuberculostearicum SK141]
 gi|311739965|ref|ZP_07713799.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|255299135|gb|EET78426.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           tuberculostearicum SK141]
 gi|311305038|gb|EFQ81107.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 156

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 21/160 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+  +P +  N G   R       + L L+ P      +K    +      +  V++  +
Sbjct: 6   IVFDNPVIPTNTGNAIRTAAVTGAS-LHLIEPLGFNFDDKHLKRAGLDYHDLADVQIHKD 64

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +   +A+        TT                       I   +   ++FG E  GL 
Sbjct: 65  FQACMDALPGARVFAFTT---------------HTDKWFTDIEYQEGDVLLFGTEPTGLP 109

Query: 134 NEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E I        +  P+ P   S+N+S +    V+E    
Sbjct: 110 EEHINHPRVTDRVRIPMVPARRSMNLSNSASTAVFEAWRQ 149


>gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 272

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 12/160 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L  ++    + L   +   N+G + R         + L+       S +A  ++  +  
Sbjct: 119 SLDPTSAPCWVALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPYSVEAVRATMGSVF 178

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              +V +     EA           A  +    SV+  +  A V +      +   I+ G
Sbjct: 179 ---AVSITRTDPEAFL---------AWRKTWPGSVVGTRLDATVSHRSAVMQKPSLILMG 226

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E+ GLT++  A  +  +  P+     SLN++ A  +MV+
Sbjct: 227 NEQAGLTDQLAAACDVNVKIPMRGRADSLNLAIATGIMVY 266


>gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ3810]
 gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ3810]
 gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
           parahaemolyticus 10329]
          Length = 247

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 53/175 (30%), Gaps = 23/175 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L       +++L       N+G   R      +  + +   R    +      +  A  V
Sbjct: 90  LAQHETPLLLVLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEV 149

Query: 68  I------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +      +  R    L+E    + +   T                 A     +      +
Sbjct: 150 VPLIRVTNLARTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPL 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ G E  G+        + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 193 AIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAK 247


>gi|148554317|ref|YP_001261899.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
 gi|148499507|gb|ABQ67761.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
          Length = 149

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 22/166 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P +  N+G + R    F +  + ++ P     SE+    +       ++  +  
Sbjct: 2   RIALHQPDIAGNVGTILRMAACFGVP-VDIIEPCGFPFSERGLRRA--GMDYAEAAEISR 58

Query: 76  NLK----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +      E+ A    +  TTA +    K+   P +                ++ G E  G
Sbjct: 59  HADWAAFESRAAGRIVLLTTAADLTLDKAGFLPDDI---------------VLLGSEGAG 103

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +       ++  +  P+ P F SLN++ +  + + E +  +    +
Sbjct: 104 VPRPVHDRADLRVRIPMRPGFRSLNVAVSAGIALAEALRQTGGWPQ 149


>gi|127514429|ref|YP_001095626.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
 gi|126639724|gb|ABO25367.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
          Length = 234

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 18/153 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83
           NI  V R      + Q+  V     WP  + R    +++ +   + +++ +  + EA A 
Sbjct: 32  NIAAVIRTADAVGIHQIHAV-----WPDIEMRVSGNTASGSQQWVKTIKHYH-MDEAAAQ 85

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                                 E A+   + I   +   +I G ER G++ E +A+++  
Sbjct: 86  FKAA--------GMQILATNFSENAVDFRD-IDYTKPTVVIMGNERDGVSEEGLAIADQQ 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I  P+  +  SLN+S A  L+++E       + 
Sbjct: 137 IIIPMIGMVQSLNVSVASALVMYEAQRQRAEAG 169


>gi|294813801|ref|ZP_06772444.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294326400|gb|EFG08043.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 267

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 20/174 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
               PV++L +P+   N+G V R    F  T +      D W     R+ +      +  
Sbjct: 114 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVITTGDLDPWHPNAVRAGAG-----LHY 168

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
               + L                  +     L   +        +    +  ++FG ER 
Sbjct: 169 ATAVARLD---------------PDDLPGGPLLVLDPEGDDIRTVALPDDALLVFGSERH 213

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           G++ E  A +  ++S P+ P   S N++ +V + ++      +        E  
Sbjct: 214 GVSPELRARATRLLSLPMRPQVSSYNLATSVAMTLFHWGGTPLAPGTPETPEHG 267


>gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
 gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
          Length = 247

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             +++L       N+G   R+     +  + +        +E AR  +  A   +  + V
Sbjct: 97  PLILVLDGVTDPHNLGACMRSADAAGVHAVVIPKDNSAGLNETARKVACGAAETVP-LVV 155

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +NL  A+  L                  A  EA   +     +G  V I+ G E  G+ 
Sbjct: 156 VTNLARALNKLQ---------DAGLWVAGAAGEADADIYSADLTGPRV-IVMGAEGDGMR 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +I  P+     SLN+S A  ++++E +   
Sbjct: 206 RLTKETCDLLIKIPMMGSVSSLNVSVATGVVLFEVLRQR 244


>gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-2A]
 gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-2A]
          Length = 244

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 61/173 (35%), Gaps = 12/173 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           M P    +    + PV +L+       N G + R+     +  + + +      +     
Sbjct: 82  MEPLIESVLKEKENPVFVLLDGVTDTRNFGAILRSAAATGVDAVFISSTGSAPLNGDVVK 141

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +SA     +   +V     + + D+ +        + +    L   E +           
Sbjct: 142 TSAGGAFKVPISKV-----QHLKDVVY------YLKAHDIPTLGITEKSTETLYDSDLKG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++FG E  G++N  + + +     P+     SLN+S A  ++ +E +   
Sbjct: 191 PLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSVACAVVFYETIRQR 243


>gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402]
 gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 263

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 19/159 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 114 IMILDGLEDPHNLGSIIRTADAIGIDGIMIPKRRSVSLNQTVVKASTGAVEHVPVMRV-N 172

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           N+ +AI  L     ++  T A+   +++ +               +  ++ I+ G E  G
Sbjct: 173 NINQAIDKLKDAGYWVAGTDAKQSVDYRKM--------------TADIDLAIVIGSEGEG 218

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++       + +I  P+     SLN S A  L+++E   
Sbjct: 219 MSRLVKEKCDFLIHLPMVGHVNSLNASVAASLLMYEVYR 257


>gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 271

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 11/144 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       N+G + R+   F++  L   +      S     S++ A  ++  VRV  
Sbjct: 125 IVVLDSVTDPHNVGAILRSCAAFDVAALVTQDRHAPPESGTLAKSASGALEIVPWVRVV- 183

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL  A+  +         +   +  +    +   V    + SG  V ++ G E  GL + 
Sbjct: 184 NLSRALERM---------SEEGYWRIGLDGDGKAVFPAALPSG-PVALVLGAEGEGLRHN 233

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                ++I   P+     SLN+S 
Sbjct: 234 VAQHCDSIARLPIASAIESLNVSN 257


>gi|16124726|ref|NP_419290.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|13421646|gb|AAK22458.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
          Length = 160

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 11/164 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P + +N+G   R    F L  L ++ P     ++K+   +A     +  +    
Sbjct: 8   RIALFQPGIPQNVGACIRLTACFGLG-LDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHD 66

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + +  +          A  R + + +L   + A   +   F   +  ++FG E  G   E
Sbjct: 67  SWETFLK---------APERVDGRLLLFTTKGATPFHRFSFEPGDT-LLFGNESRGAPEE 116

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             A ++  I  P+ P   S+N++    + + E +  +    E  
Sbjct: 117 VHAAAHGRIVIPIRPEARSMNLATTAAMALGEALRQTGGFPEAG 160


>gi|306835998|ref|ZP_07468990.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304568164|gb|EFM43737.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 268

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 12/169 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A ++ N     + + V      N G + R         +            K   +SA 
Sbjct: 109 SAGKILNGKPKLISVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAG 168

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   +   R   N+K+ +  L          R +   ++A      V        Q    
Sbjct: 169 SLFHVPVAR-DPNIKDVLGQL----------RKSGMQIVATAADGEVELADADLTQPTAW 217

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  GL  E +  ++  +  P+     SLN++ A  + ++E  +  
Sbjct: 218 LFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYESAKAQ 265


>gi|271967363|ref|YP_003341559.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
           43021]
 gi|270510538|gb|ACZ88816.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
           43021]
          Length = 276

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R ++    VLA   A     + +        IFG E WGL  E + L++ ++  P++   
Sbjct: 185 RLKDAGLRVLAADGAGKQTLDDVDLSGPTAWIFGNEAWGLPEEILRLADEVVRVPIHGRA 244

Query: 153 PSLNISQAVLLMVWECMENSIVSSEKNVK 181
            SLN++ A  + ++    +    S     
Sbjct: 245 ESLNLATAAAVCLYASARSQRAGSPAPAP 273


>gi|225163934|ref|ZP_03726225.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224801470|gb|EEG19775.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 161

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 23/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           I+L  P++ +N G + R      L  ++L L++P     +++    +        S+ V 
Sbjct: 4   IVLFQPEIPQNTGNIGRMCA---LTQSRLHLIHPLGFTITDRHLRRA--GMDYWFSLDVH 58

Query: 75  SNLKEAIADLHFIYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +   A       + T+  A  R     +          +     G   G++FG E  G 
Sbjct: 59  HHADWA------AFLTSPHAPPRERLW-LFTTHATRRHWDAAFADGD--GLVFGNEGHGA 109

Query: 133 T---NEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIVSS 176
               ++EI  +   ++ P  NP   SLN+S A  +  +E +    + S
Sbjct: 110 PAWLHDEIGAARR-VTIPHANPDLRSLNLSTAAGIACYEALRQVGMPS 156


>gi|325125349|gb|ADY84679.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 185

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71
           I+L +P++ +N G +AR     N  L    L+ P      +K    +      +     +
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFRLDDKHLKRAVLDYGGEV---EI 58

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRER 129
           R   +L+  +          A   +N +  L  K    A    +     ++   +FGRE 
Sbjct: 59  RRHDDLRAFL----------ATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRET 108

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
            GL    +   ++  +  P++    + N+S +  ++++E +        +          
Sbjct: 109 TGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168

Query: 189 KGE 191
           K +
Sbjct: 169 KDD 171


>gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 333

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 172 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 231

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI         + + R  +   L     A ++ E  F    + ++ G E  
Sbjct: 232 ARVV-NLTKAIE--------SLKERGYYSVGLDGGGDA-LVGETGFETDPLVVVLGSEGN 281

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL+       ++I   P++ +  SLN S A  + ++
Sbjct: 282 GLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519]
 gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii]
          Length = 242

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 18/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R+        + +   R    +     ++A A   +  ++V   
Sbjct: 96  IILDEIEDPHNLGAIIRSAEGAGAHGVIIPKRRSASVNATVEKTAAGAASYMKVIKVTNL 155

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            S +++   +  +IYA                +      + +    +V ++ G E  G++
Sbjct: 156 VSTVEKLKKEGIWIYAL---------------DMDGESYDTVDLKGSVALVVGNEGKGIS 200

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  +  +  P+     SLN S A  ++++E +   
Sbjct: 201 RLLKDNCDFTLKIPMKGNVGSLNASVAASILLYEVVRQR 239


>gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           nigrificans DSM 574]
          Length = 252

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 11/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L +     N+G + R +       + +   R    +     +SA A   +   RV +
Sbjct: 106 IVMLDEINDPHNLGAIIRTVDAAGAHGIIIPRRRAVALTATVARASAGAVEYVPVARV-T 164

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL + I  L          +     V+        +         + ++ G E  GL   
Sbjct: 165 NLDQTIRQL----------KELGLWVVGADMDGPEVYWDAKLTGPLLLVIGGEGKGLGRL 214

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++  P+     SLN S A  L+V+E +   
Sbjct: 215 IKERCDMLVRLPMAGHVGSLNASVAAALLVYEVIRQR 251


>gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 248

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 15/168 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANA 64
           +   S    ++IL   +   N+G   R      +    ++ P+D      A  R  +   
Sbjct: 91  EEVTSEPPLLLILDGVEDPHNLGACFRVADAMGVH--AIICPKDSAVGVNATVRKVACGG 148

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                       +  A+ ++     T    ++    ++     A     +      + ++
Sbjct: 149 ------AESVPFI--AVTNIGRTIRT---LKDQGLFIIGTDGEAKHNLYQENLKGPIAMV 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+      L ++++S P+     SLN+S A  + + E     
Sbjct: 198 LGSEGKGMRRLTRELCDSLVSIPMFGQVESLNVSVASGICLSEIRRQR 245


>gi|255321809|ref|ZP_05362959.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
           RM3277]
 gi|255300913|gb|EET80180.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
           RM3277]
          Length = 226

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       NIG + R         + +V        E    +S+ A    +   V    
Sbjct: 87  VLYGLSDVGNIGAIVRTAHALGCGGIVVVA--KNLAMEGVLRASSGAAYEANIALVEDGL 144

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L   +  + F    TA    N   V                 Q V ++ G E  GL  +
Sbjct: 145 SLLNELKQVGFKIYATASGGKNAHEVKF--------------DQKVALVMGSEGEGLHKK 190

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +A S+ I+   +   + SLN+S A  ++ 
Sbjct: 191 VLAKSDEIVGIKMKNDWDSLNVSAAFAILC 220


>gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
           I]
 gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis
           12822]
 gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
           RB50]
 gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
           I]
 gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis]
 gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
           RB50]
 gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS]
          Length = 245

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           ++ +  +GP +  IL       N+G   R      +    ++ PRD     +   +  + 
Sbjct: 87  EVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVH--AVIAPRDRAVGLNATVQRVAC 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    ++E      ++  T               + A     ++ + +
Sbjct: 145 GAADTVPYLTVTNLARTMRELKERDVWLVGT--------------DDQAGESMHQVDARR 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  + G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 191 SMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESVRQR 243


>gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
           2002]
 gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
           2002]
          Length = 251

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 22/179 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R           ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGVTDPHNLGACLRVADAMGAH--AVIAPKDRSATLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             V+  + V +    L++      +I  TT                A        +   +
Sbjct: 147 AEVVPYITVTNLARTLRDLKDAGVWIAGTT--------------MEADTDLYHFDAAGPL 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             + G E  G+        + ++S P+     SLN+S +  +++ E     ++  E   
Sbjct: 193 AWVMGSEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVLSESRRQRVLKGEAKA 251


>gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
 gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
          Length = 253

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 23/167 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +G  +I  + Q   N+G + R    F +  +  +N      + K   +S  +   I    
Sbjct: 104 EGVYVIADNVQDPGNLGTIIRTADAFGVDAVFTINNSVDIYNPKVLRASMGSIFHIP--- 160

Query: 73  VFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +   E +  L      ++AT  +       V                 +    I G E
Sbjct: 161 VIATANEVLYKLKGKGVKVFATHLKGEKFVHEV--------------EIDKGTAFILGNE 206

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             G+++  +   +  I  P+     SLN+S A  + ++E     ++ 
Sbjct: 207 ARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQRLIK 251


>gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes J139]
 gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes J139]
 gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA2]
 gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL001PA1]
 gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL044PA1]
 gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL082PA2]
 gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA3]
 gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA3]
 gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA4]
 gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL060PA1]
 gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA2]
 gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL103PA1]
 gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
           P08]
          Length = 318

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q    G ++ L       N+G + R+   F    + + + R    +  A  +SA A    
Sbjct: 159 QTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA---- 214

Query: 69  DSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            + RV     SNL +A+      +A T      +  V    EA   +         + ++
Sbjct: 215 -AARVPVAMASNLNQALG----KFAATG-----WMIVGLAGEADSDIAAAPGLDGPLVLV 264

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            G E  GL        + + S P++    SLN S A  + ++E       +SE
Sbjct: 265 VGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRGSASE 317


>gi|257146495|emb|CAX30784.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Conomelus anceps]
 gi|257146515|emb|CAX30799.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Delphacidae sp.]
          Length = 239

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 12/148 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  V R      + Q+  +  ++   S  A ++ +N       VR  ++++ AI+  
Sbjct: 30  PHNISAVIRTADAVGIPQIHAIWCKNSSKSLSAAAAGSNHWV---KVRTHASIENAISTC 86

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  A  +     +      AI    +I   Q   II G+ER G++ + +AL++  I
Sbjct: 87  K-----AAGMQILAAHLTN---QAIDFR-QIDYNQPTCIILGQERAGISKQALALADHNI 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
             P+  +  SLN+S A  L+++E     
Sbjct: 138 HIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|83816316|ref|YP_444648.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
 gi|83757710|gb|ABC45823.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
          Length = 312

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVR 72
           G V++L   Q   N+G + R    F   Q  +  P   G    K   + A +   +   R
Sbjct: 164 GTVLVLDGIQDPGNVGTLLRTAAWFG-AQAVVAGPGTAGLYGPKVMRAGAGSHWALPLAR 222

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 +A            R R +  ++          +      +   ++ G E  GL
Sbjct: 223 T-----DAPGPFL------DRLRRHGAALYGADLQGTRADAW-GPDRPSALVLGSEAHGL 270

Query: 133 TNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECM 169
           +   +   +  +S P  P  P   SLN++ A  ++++E +
Sbjct: 271 SAAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLYEWL 310


>gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis
           HAW-EB3]
          Length = 246

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 27/164 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVI------D 69
           IL       N+G   R      +    +V PRD     +      +  A  V+      +
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGAAEVVPLFQVTN 158

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R   +L++    +  + A    + + +K+ L                 ++ I  G E 
Sbjct: 159 LARTMKSLQD--KGVWIVGAAGEADSDLYKTDL---------------KGSLAIAMGAED 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            GL        ++I S P++    SLN+S A  + ++E +   +
Sbjct: 202 KGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLFEAVRQRL 245


>gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
 gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
          Length = 262

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 18/174 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA 64
           P +     G ++++   Q   N+G + R+     + Q L  V   D + + K   S+  A
Sbjct: 103 PHVAPGKPGLLLVIDAVQDPGNLGTLLRSAEAVGVAQVLCSVGTVDLY-APKVVRSAMGA 161

Query: 65  DCVI--DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +    +  + E +A +  +YA              P+             Q   
Sbjct: 162 HFRLAMEQDLSWDAIGERLASVDHVYAA------------DPEARMPY--YAADWRQPSA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  GL++    L+   I+ P+     SLN++ A  ++++E +    +  
Sbjct: 208 LLVGNEAHGLSDAARRLATKQIAIPMRGGTESLNVAVAASVILFEALRQRTLGR 261


>gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
           F0415]
 gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
           F0415]
          Length = 246

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R      +  + +   R    +     +S  A   +   R
Sbjct: 98  NPLILILDGLTDPHNLGSILRTADATGVAGIIIPKHRAVGVTPVVAKTSTGAVEHVPIAR 157

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +     ++I+ T                     ++   +G  + +I G E 
Sbjct: 158 VTNLSQTLDKLKEAGYWIFGT--------------DMDGTPSHKWNTAG-KLALIIGNEG 202

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +I+ P+     SLN S A  ++++E   + +
Sbjct: 203 RGISANLKKQVDEMITIPMTGHVQSLNASVAAAVLMYEVFRHKL 246


>gi|237741818|ref|ZP_04572299.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429466|gb|EEO39678.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 258

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----D 65
           S    ++IL D     N+G + R     N   + L        +EK   ++  +      
Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNL 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++   + + LKE                NN+  +    + A +   +I   +   IIF
Sbjct: 165 YYLEKSEIINFLKE----------------NNYSIISTYLDKAAISYNKIKLKEKNAIIF 208

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++++ I ++N     P+     SLN++ A  +++++  E
Sbjct: 209 GNEGNGISDDFINITNYKTIIPILSNTESLNVAVATGIILYKFRE 253


>gi|291456687|ref|ZP_06596077.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
 gi|291381964|gb|EFE89482.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
          Length = 292

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+    ++    LV P  G P   +A   S      I   R+            
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGRNEDGTENKH 195

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              F  + E  +      A    +R+     L  +  A    E     + + +IFG E  
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIEKLALIFGTEGD 253

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL++  IA ++  +  P++    SLN++ +  +  +
Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289


>gi|163750719|ref|ZP_02157955.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
 gi|161329563|gb|EDQ00555.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
          Length = 231

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 18/153 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAIAD 83
           NI  V R      + Q+  V     WP  + R    +++ +   + +++ +      + D
Sbjct: 32  NIAAVIRTADAVGIHQIHAV-----WPDIEMRVSGNTASGSQQWVKTIKHYH-----MHD 81

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
               +    R +          + A+   E I   +   II G E  G++ E IA ++  
Sbjct: 82  AEAAF----RAQGMQILATNFSKEAVDFRE-IDYTRPTAIILGNEHDGVSAEGIAAADQH 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I  P+  +  SLN+S A  L+++E       + 
Sbjct: 137 IIIPMIGMVQSLNVSVASALIMYEAQRQRQAAG 169


>gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 252

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+        L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 100 VLDGVTDPHNLGACLRSADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               EA + + ++  +G  + +I G E  G+
Sbjct: 158 LARTLEKLQQRGLWVVGTAG-------------EAEVSIYDQDLTGPTI-LIMGAEGKGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + ++  P+     SLN+S A  + ++E +    V +
Sbjct: 204 RRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLFEALRQRSVKA 247


>gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
           60-3]
 gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
           60-3]
          Length = 247

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 26/178 (14%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKA 57
           P L +  + P I+L      V      N G +AR      +    +V P     S    A
Sbjct: 87  PMLYDEGQMPFIVLLDGVTDVR-----NFGAIARTCECAGVH--AIVIPERDSVSVTADA 139

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            ++SA A   +  + V    ++ +    F+       R++   ++     A      +  
Sbjct: 140 VNASAGA---LMRIPVCRE-RDLVTACRFL-------RDSGLQLVGADVDATTNYTSLPM 188

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +GI+ G E+ G++   +      +S P      SLN+S A  +M++E +     +
Sbjct: 189 TPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQQGAT 246


>gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1]
 gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans
           SPH-1]
          Length = 263

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64
           +    +K  +++L       N+G   R           ++ P+D      A  +  ++ A
Sbjct: 93  EADGISKPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGVNATVAKVASGA 150

Query: 65  DC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                   V +  R  + LKE   D+ +I  T+              + A      +   
Sbjct: 151 AETVPYFMVTNLARTLNELKE--RDI-WIIGTS--------------DDAPKTLYEVDLT 193

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
               ++ G E  G+        + +I  P+     SLN+S A  + ++E +      +  
Sbjct: 194 GPTALVLGAEGDGMRQLTRKTCDELIGIPMMGAVSSLNVSVASGVCLYEALRQRGQGTTP 253

Query: 179 NVKEQNTPATK 189
            V     PA +
Sbjct: 254 AV--SAAPADQ 262


>gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51]
 gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 275

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 59/188 (31%), Gaps = 43/188 (22%)

Query: 3   PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P+ P ++ +  G   V +L       N+G + R+     +  + L          +A   
Sbjct: 108 PHLPSVEEACAGASRVAVLEGIADSTNVGAIFRSAAALGIDTVLLTPSCCDPLCRRAVRV 167

Query: 61  SANADCVIDSVRV-------------------FSNLKEAIADLHFIYATTARNRNNFKSV 101
           S      +   R+                   F  +  A+ D             N  S+
Sbjct: 168 SMGTIFQVPWARIGSESSQWPQQGMKSLRKLGFKTVAMALND-------------NAVSI 214

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
             P+  A          + + I+ G E  GL    IA  +     P++    SLN++ A 
Sbjct: 215 DDPQLMAE---------EKLAIVLGSEGNGLAPCTIADCDYTACIPMSHNVDSLNVAAAS 265

Query: 162 LLMVWECM 169
            +  W+  
Sbjct: 266 AVAFWQLR 273


>gi|325684460|gb|EGD26624.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 185

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71
           I+L +P++ +N G +AR     N  L    L+ P      +K    +      +     +
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFHLDDKHLKRAVLDYGGEV---EI 58

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRER 129
           R   +L+  +          A   +N +  L  K    A    +     ++   +FGRE 
Sbjct: 59  RRHDDLRAFL----------ATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRET 108

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
            GL    +   ++  +  P++    + N+S +  ++++E +        +          
Sbjct: 109 TGLLETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168

Query: 189 KGE 191
           K +
Sbjct: 169 KDD 171


>gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
 gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
          Length = 271

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID- 69
           + K  +++L   Q   N G + R         + L        S+K   ++  +   +  
Sbjct: 118 ARKPLLVVLDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLPV 177

Query: 70  ----SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
               S    +   +A A    +   TA +                    +  G+   I F
Sbjct: 178 VTDVSAEEVATFAQA-AGCQLLA--TALDEQAKPHF------------AVDFGKGSLIAF 222

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++ EE+  +   +  P+     SLN+  +  ++++E +   
Sbjct: 223 GNEGGGVS-EELLAAAEKVYIPMYGEAESLNVGVSSAVVLYEAVRQR 268


>gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 255

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 25/153 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
           N G + R      +  + +  P+ G    +     +SA A   +   +V  ++K+A+   
Sbjct: 119 NFGAIIRTAECTGVDGIII--PKKGAAPVTADTIKTSAGAAFKVPIAKV-DHIKDAVFYL 175

Query: 82  --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             + +    AT    + N      P              +   I+ G E  G++   I  
Sbjct: 176 QASGISVTVAT---EKTNNTIYDVPF------------KEPCAIVMGSEDRGVSPSVIKA 220

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ +   P+     SLN+S A  + ++E +   
Sbjct: 221 ADQLAKLPLLGEIESLNVSVACAVFLYEVVRQR 253


>gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
           255-15]
 gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
           255-15]
          Length = 251

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 20/152 (13%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L   Q   N+G + R         + + +      + K   ++  +   +    +  +L+
Sbjct: 110 LDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRATQGSIFHLP--VIMMSLE 167

Query: 79  EAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           EAI DLH    FI  T  R     +     +               +G+I G E  G+  
Sbjct: 168 EAIQDLHELGVFILGTALRG---AQPYTDVENLGA-----------IGLIIGNEAQGVAP 213

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E +   +     P+     SLN + A  ++++
Sbjct: 214 ELLDQCDGRAYIPIRGKAESLNAAVAAGILLY 245


>gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 299

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 7/172 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L + +   N G V R         +   +      + KA  +S  + 
Sbjct: 128 EEILRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPYNPKAVRASVGSL 187

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        ++EA+  L      TA  R         ++    L++ +  G     IF
Sbjct: 188 FHLPVATGVP-VEEAVDGLR-----TAGARVLAADGAGERDLDEELDDGVL-GAPTAWIF 240

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E WGL     AL++ ++  P++    SLN++ A  + ++         + 
Sbjct: 241 GNEAWGLPEATRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAPTG 292


>gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
 gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Florida]
 gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
 gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Florida]
          Length = 261

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRV 73
           V+IL       N+G + R+   F+   + L  P    PSE      +S+ A  ++  V+V
Sbjct: 110 VVILDRVTDINNVGAIVRSAACFDADAVIL--PEHHSPSESCTITKASSGAADIVPVVQV 167

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 ++    + ++ Y                          I   +   II G E  
Sbjct: 168 GNLVKTMEYLKQNGYWCYGM--------------DAGGDKALHEISFCERRAIILGSEGK 213

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G+        + ++  P++    SLN+S A  + ++
Sbjct: 214 GIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 249


>gi|221233441|ref|YP_002515877.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|220962613|gb|ACL93969.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 154

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 11/164 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P + +N+G   R    F L  L ++ P     ++K+   +A     +  +    
Sbjct: 2   RIALFQPGIPQNVGACIRLTACFGLG-LDVIEPCSFPLNDKSLKRAALDYGSLSHLTRHD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + +  +          A  R + + +L   + A   +   F   +  ++FG E  G   E
Sbjct: 61  SWETFLK---------APERVDGRLLLFTTKGATPFHRFSFEPGDT-LLFGNESRGAPEE 110

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             A ++  I  P+ P   S+N++    + + E +  +    E  
Sbjct: 111 VHAAAHGRIVIPIRPEARSMNLATTAAMALGEALRQTGGFPEAG 154


>gi|87312089|ref|ZP_01094195.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
 gi|87285185|gb|EAQ77113.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
          Length = 269

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 24/166 (14%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +  +++L   +   N+G + R         L   + R    +  A  +S      + ++ 
Sbjct: 118 RPLIVVLEGVEKPGNLGAILRTADAVGADCLIAADARTDIFNPNAIRAS------LGTIF 171

Query: 73  VFSNLKEAIADLHFIYATTARN----RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                +          ATTA      R     + A +    V  E++       +I G E
Sbjct: 172 AVPTFE----------ATTAETLAFLRAAGAQMFAARVEGAVSYEQVELIGPTALILGSE 221

Query: 129 RWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENS 172
             GL+  +  L++ + +   P+  +  SLN+S    ++++E     
Sbjct: 222 AEGLS--DRWLADDVTNIRLPMRGIADSLNVSTTAAVLLYEANRQR 265


>gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 21/146 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-----FSNLKEA 80
           N+G   R+     +    LV PR   P   ++   S      +   R+        L+ A
Sbjct: 138 NLGAAFRSAAALGV-DAVLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIPWPSGIGELQAA 196

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                     T          +   E     NE+         IFG E  GL  E +   
Sbjct: 197 --------GFTVAALALSDDSVTLDEFVEQKNEK------TAFIFGTEGHGLAQETLEAV 242

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
           ++++  P+     SLN++ +  ++ +
Sbjct: 243 DSVVKIPMAGGVDSLNVAASAAVVFY 268


>gi|15835298|ref|NP_297057.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270285471|ref|ZP_06194865.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270289482|ref|ZP_06195784.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
 gi|301336868|ref|ZP_07225070.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
 gi|8163291|gb|AAF73591.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 265

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 22/155 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKE 79
           +   NIG + R      +  + L +P     +     SS  A     +  +     +L+E
Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGAVFTVPIWQA-----SLEE 180

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA- 138
            +A    +     R +        P       ++     Q + ++FG E+ GL+   +  
Sbjct: 181 VLA---LV-----REQEWKIFTTTPSTQTFYFDQNFC--QPLAVVFGSEKDGLSPSWLDG 230

Query: 139 -LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              N  I+ P+     SLN+S +V  + +E +   
Sbjct: 231 SFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263


>gi|281205358|gb|EFA79550.1| hypothetical protein PPL_07601 [Polysphondylium pallidum PN500]
          Length = 405

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N   G  ++L D +  EN+G   R      L++L L        + K   ++  A+  +
Sbjct: 223 KNIPWGISVLLDDCRSSENVGSFYRTCDGSGLSRLYLCGITATPANLKVAKTALGAEFDV 282

Query: 69  DSVRVFSNL---KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------- 118
                 S L   KE       I       R+  + +L   +      E + S        
Sbjct: 283 PWSYSPSALHCVKELKRKGVVIIGIEQTPRS--QPLLESIDKLASEIEIVDSQRQQQQQQ 340

Query: 119 ---QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                + ++FG E  GL+ E I   + I    +     SLN++ +  ++ +
Sbjct: 341 TRYPPICLLFGNEVAGLSQEVIDQCDYIYDLEMRGKKRSLNVAVSFGIVAY 391


>gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
           adiacens ATCC 49175]
 gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
           adiacens ATCC 49175]
          Length = 287

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 18/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL   +   N+G + R      +  + +   R    +     +S  A   +  VRV +
Sbjct: 141 IVILDGVEDPHNLGSILRTADATGVHGIIIPKRRSASLTATVAKASTGAIEHVPVVRVTN 200

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               +++  A   +++ T     +  K                 +   + I+ G E  G+
Sbjct: 201 LTQTIEQLKARGVWVFGTDMNGTDYRKW---------------NTKGPLAIVMGNEGKGV 245

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + +++ P+     SLN S A  LM++E   N 
Sbjct: 246 SRIVKESVDEMVTIPMVGHVQSLNASVASALMMYEVFRNR 285


>gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Puerto Rico]
 gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Virginia]
          Length = 251

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRV 73
           V+IL       N+G + R+   F+   + L  P    PSE      +S+ A  ++  V+V
Sbjct: 100 VVILDRVTDINNVGAIVRSAACFDADAVIL--PEHHSPSESCTITKASSGAADIVPVVQV 157

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 ++    + ++ Y                          I   +   II G E  
Sbjct: 158 GNLVKTMEYLKQNGYWCYGM--------------DAGGDKALHEISFCERRAIILGSEGK 203

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G+        + ++  P++    SLN+S A  + ++
Sbjct: 204 GIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 239


>gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parasanguinis F0405]
 gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parasanguinis F0405]
          Length = 242

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 21/178 (11%)

Query: 2   TPYAPQLQNSAK---GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           T  A  L+ +AK     ++IL       N+G + R     N++ + +   R    +    
Sbjct: 80  TDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRTADATNVSGVIIPKHRAVGVTPVVS 139

Query: 59  SSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            +S  A   I   RV +    L +   +  +I+ T                     ++  
Sbjct: 140 KTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGT--------------DMNGTPSHQWN 185

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +G  + +I G E  G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 186 TAG-KLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
 gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
          Length = 220

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              Q+    +  + IL +      N+  + R      +  +  +N  D +P+    S  +
Sbjct: 10  RIRQVLEKRQPDLTILTEDVHKPHNLSAIIRTCDAVGILDVHCINTTDEFPTFSQVSQGS 69

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           +    + S     N+K  I  L          R NF    A      +    I   Q   
Sbjct: 70  DKWVFLHS---HPNIKTGINHL---------KRQNFNIYAAHFTDQSLDYREIDYTQPTA 117

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I+ G E+WG++ E   L +  I  P+  +  SLN+S A  ++++E     +   
Sbjct: 118 ILLGAEKWGVSEEAANLVDGHIIVPMLGMVQSLNVSVAAAVILFEAQRQRLAQK 171


>gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
           12J]
          Length = 250

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDS 70
              +++L       N+G   R           ++ P+D     +      ++ A   +  
Sbjct: 95  TPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINTTVAKVASGAAETVPY 152

Query: 71  VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + V +    L+E      ++  T               + A     +        I+ G 
Sbjct: 153 ITVTNLARTLRELQERGVWVIGTA--------------DEAEQDLYQADFKGPTAIVMGA 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  G+        +A++S P+     SLN+S A  + ++E +     +  +
Sbjct: 199 EGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRAAAPAR 249


>gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL030PA1]
          Length = 318

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q    G ++ L       N+G + R+   F    + + + R    +  A  +SA A    
Sbjct: 159 QTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA---- 214

Query: 69  DSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            + RV     SNL +A+      +A T      +  V    EA   +         + ++
Sbjct: 215 -AARVPVAMASNLNQALG----KFAATG-----WMIVGLAGEADSDIAAAPGLDGPLVLV 264

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            G E  GL        + + S P++    SLN S A  + ++E       +SE
Sbjct: 265 VGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASRVRGSASE 317


>gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 263

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVAR---AMWNFNLTQLRLVNP-RDGWPSEKARSSSA 62
            L    +  V++L   Q   N+G + R   A+         +V          K   ++ 
Sbjct: 107 PLLAKERSLVVVLDGVQDPGNVGTIIRSADAVAADG----VIVGAGCADIYGPKVLRATM 162

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +    V ++L E +          A+ R    +  + + AA          Q V 
Sbjct: 163 GSLFHLP--VVHADLAEVLPQ--------AKQRGIRLAGTSLQAAANCFAYDFT--QPVW 210

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++FG E  GL+     L +  +  P+     SLN++ A  ++++E M   
Sbjct: 211 LLFGSEGGGLSPAVRELMDDGLLIPMRGQAESLNVAMAASVLLYEAMRQR 260


>gi|144227485|gb|AAZ44230.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 174

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++G N G + R+ +   L +L ++ P       K     A A  ++  +     
Sbjct: 4   IVLFQPEIGPNTGNIIRSCFVAGL-KLHIIMPIAFDLEPKHLKRPA-AGILLSEIEHEIH 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + N  E     +  + T    R   K         +     I + +++  +FGRE  G
Sbjct: 62  KNWQNFSEKYGQKNLFFIT----RYGQKLY-----TEVDFYTEIETKKDIFFVFGRESTG 112

Query: 132 LTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E +          +  P+     SLN++  V+++ +E    
Sbjct: 113 IPIEILKKNKEKC---LRIPMIAKARSLNLANTVVIIAYEFHRQ 153


>gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 277

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 90  TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149
           T  + R     +LA   +     + +   +    +FG E WGL  E + L++ ++  P+ 
Sbjct: 180 TVRQAREAGLRILAADASGARTLDEVDLSRPTAWVFGNEAWGLPPELLELADEVVRVPIY 239

Query: 150 PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
               SLN++ A  + ++     S  +  +++     P+T 
Sbjct: 240 GRAESLNLATAAAVCLY----ASARAQRRSLHPVEDPSTS 275


>gi|225012277|ref|ZP_03702714.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225003832|gb|EEG41805.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 174

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q      ++IL + +   NIG V R    F + ++ L       P +    ++  A   +
Sbjct: 19  QADKTPLILILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIHKTALGATENV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGR 127
                  N  E +  LH          N     +   E AI L+  +         I G 
Sbjct: 79  AW-EYAENTLEVVQKLH--------KENVSVWAIEQTEKAIFLDSFQPKKNTRHAFILGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E  G++ E +      +  P      SLNIS A  ++VW+  
Sbjct: 130 EVRGVSQEAVDACGQALEIPQFGTKHSLNISVATGVVVWDYF 171


>gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 253

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 63/166 (37%), Gaps = 23/166 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +  +   G  ++L   Q   N+G + R    F +T + L        +      S+ A 
Sbjct: 98  EEYLSEKPGTFLVLDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVSSGAL 157

Query: 66  CVIDSVRVF------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             +   ++F      + L+    + ++I +T+ R                    ++   +
Sbjct: 158 SFL---KIFTVKNLANTLELLKENGYWIVSTSDR--------------GTENWSKLPELK 200

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            + I+ G E  G+    +  S+ ++  P++    SLN++ A  +++
Sbjct: 201 ELAILMGNEGEGVKRILLEKSDFVLRIPIHGNLSSLNVTVATGIVL 246


>gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 329

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 170 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 229

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI         + + R  +   L     A ++ E  F    + ++ G E  
Sbjct: 230 ARVV-NLTKAIE--------SLKERGYYSVGLDGGGDA-LVGETGFETDPLVVVLGSEGN 279

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL+       ++I   P++ +  SLN S A  + ++
Sbjct: 280 GLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 315


>gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
 gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
          Length = 244

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 20/163 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+   +  +++L + Q   N+G + R   +F +  + +        + K   SS  A   
Sbjct: 91  LKPVKEENILLLDNVQDPGNVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFY 150

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I    + ++L E I  L      +YAT   +++                + I   +   I
Sbjct: 151 IP--VIQTDLVEEIKKLQERNIEVYATALHDKHKD-------------LQDIKPSKKYAI 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + G E  G+  E I LSN I+   +   F SLN++ A  + ++
Sbjct: 196 LVGNEGQGVRKELIDLSNHIVKIEM-ETFESLNVAIATSICMY 237


>gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 263

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G V R         + LV       S +   ++  +   +   +  + + E +   
Sbjct: 130 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK--ATIPEFL--- 184

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  A       SV+     A V ++     +   I+ G E+ GL  E  A  +  +
Sbjct: 185 -------AWRETWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNV 237

Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
             P+     SLN+S A  +M++
Sbjct: 238 KIPMRGRADSLNLSVATGIMIY 259


>gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
           WAL-14163]
 gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
           WAL-14163]
 gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 246

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 20/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
            IL   +   N+G + R         + +   R    +     +SA A       +V   
Sbjct: 101 FILDGIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNI 160

Query: 75  -SNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + ++E     L F+ A                +    L  R+     +G++ G E  G+
Sbjct: 161 SATIEELKEKGLWFVCA----------------DMGGELMYRMNLKGPIGLVIGSEGDGV 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +       + I S P+     SLN S A  ++ +E +   + 
Sbjct: 205 SRLVKEKCDYIASIPMKGDIDSLNASVAAGVLAYEIVRQRME 246


>gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 247

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 26/178 (14%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKA 57
           P L +  + P I+L      V      N G +AR      +  + +  P     S    A
Sbjct: 87  PMLYDEGQMPFIVLLDGVTDVR-----NFGAIARTCECAGVHAIVI--PERDSVSVTADA 139

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            ++SA A   +  + V    ++ +    F+       R++   ++     A      +  
Sbjct: 140 VNASAGA---LMRISVCRE-RDLVTACRFL-------RDSGLQLVGADVDATTNYTSLPM 188

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +GI+ G E+ G++   +      +S P      SLN+S A  +M++E +     +
Sbjct: 189 TPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQHNAN 246


>gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
           TCF52B]
 gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
           TCF52B]
          Length = 238

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 48/173 (27%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI----DSVR 72
           +IL   Q   N G + R                         + ++ AD +I    +SV+
Sbjct: 90  VILDQLQDPHNFGAIIRT------------------------AVASGADAIIIPKNNSVQ 125

Query: 73  VFSNLKEAIADLHFIYAT-----TARNRNNFKSVLAPKEAAIVLNERIFSGQ-------- 119
           V   +      +     T       +  N  + +   KE  I +     +G+        
Sbjct: 126 VTPTV------VKVSVGTIFKINIIKTINIARFIKNIKEMGIWVYGADTNGKVYYKTDLR 179

Query: 120 -NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + I+ G E  G+        +A+I+ P+     SLN+S +  ++++E M  
Sbjct: 180 KPIAIVLGNEGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLYEVMRQ 232


>gi|171059516|ref|YP_001791865.1| tRNA/rRNA methyltransferase SpoU [Leptothrix cholodnii SP-6]
 gi|170776961|gb|ACB35100.1| tRNA/rRNA methyltransferase (SpoU) [Leptothrix cholodnii SP-6]
          Length = 277

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSE--KARSSSANADCVIDSVR 72
            ++L   Q   N+G + R+     + Q L +      W  +  +A   +  A  +++ V 
Sbjct: 133 TLVLDRLQDPGNVGTLLRSAAALGVKQVLAMKGTAALWSPKVLRAGMGAHFALHLVEGVE 192

Query: 73  V--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V     L   +       AT++    +   V  P              Q    + G E  
Sbjct: 193 VNELDTLDLPL------LATSSHAEQSLHEVRLP--------------QPCAWVLGHEGQ 232

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           G+    +      +  P      SLN++ A  + ++E    ++  
Sbjct: 233 GVAEAVMRRCALTVRIPQPGGEESLNVAAAAAICLYESARQALTG 277


>gi|313899457|ref|ZP_07832967.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2]
 gi|312955745|gb|EFR37403.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2]
          Length = 169

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 64/170 (37%), Gaps = 21/170 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFS 75
           +L +P++ +N G + R       T+L L+ P      E+    +   D V  ++   ++ 
Sbjct: 5   VLYEPEIPQNTGNMMRTCMATG-TRLHLIQPLGFSLDEQHLKRA-GMDYVKELEY-TIYK 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT-- 133
           + +E          T     +N+  +    + A    +      ++  I G+E  G+   
Sbjct: 62  SWEEF---------TQQNPSDNYYYMTRYGKKAPSQFDFTKCEGDIYFILGKESTGIPKT 112

Query: 134 --NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             + ++      +  P+     SLN+S    ++++E +          V+
Sbjct: 113 ILSRQLEHC---MRLPMVANARSLNLSNCAAIILYEALRQLDYPGLSGVE 159


>gi|298292455|ref|YP_003694394.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
 gi|313471749|sp|D7A3L6|TRML_STAND RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|296928966|gb|ADH89775.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
          Length = 158

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
            + L +P + +N G +ARA+    L +L +V P  G+P   A    A     +D   +  
Sbjct: 4   ALALYEPDIAQNAGTLARAVACLGL-ELHIVEP-AGFPVGDAGFRRAG-MDYLDRAVIRR 60

Query: 74  ---FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              F   +E   A      + ATT   R     V                 +   ++ GR
Sbjct: 61  HASFKAFEEWRRA-EGRRLVLATT---RGAVAHVDFAFT------------ETDVVLLGR 104

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+       ++A I  P+N    SLN++ A  +++ E +  +
Sbjct: 105 ESAGVPEAVHESADARIVIPLNEGARSLNVALAGAMILGEALRQT 149


>gi|261420869|ref|YP_003254551.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|319768540|ref|YP_004134041.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
 gi|261377326|gb|ACX80069.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|300808463|gb|ADK35364.1| Rrm [Geobacillus stearothermophilus]
 gi|317113406|gb|ADU95898.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
          Length = 247

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 28/199 (14%)

Query: 7   QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANA 64
           ++ N     + +L++      N   V R    F +  + +V  +  + P+      +   
Sbjct: 40  EVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA--- 96

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                ++    ++K AIADL      +YA  +        V             I   Q 
Sbjct: 97  -DQWLTLHHKPDIKTAIADLKSQGYQVYA--SYLGEGTIPVSD-----------IDLSQP 142

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             ++FG E  G++ E + L++     P+     S NIS A  L +++  E +   + ++ 
Sbjct: 143 TALLFGNEHSGVSEEALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRH- 201

Query: 181 KEQNTPATKGELLSFLDYL 199
                    GE  +  +  
Sbjct: 202 ----YYLLPGEKKALYEQW 216


>gi|224080139|ref|XP_002306029.1| predicted protein [Populus trichocarpa]
 gi|222848993|gb|EEE86540.1| predicted protein [Populus trichocarpa]
          Length = 269

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 19/166 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            N+  V R+        + +++       ++ R  S  A+  +D + ++ + K+    + 
Sbjct: 84  GNVSAVFRSADALGFQSVHVISCDSSKRYKENRHVSMGAEKWLD-IELWDSAKDCFQVLK 142

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +     ++  +                I+ G E  G+++E + LS+ 
Sbjct: 143 SRGYRIATT----HVGIDAVSIYDM--------DWSCPTAIVVGNENRGISDEALELSDL 190

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNT 185
             S P+  +  S N+S A  +++        + + S      E+  
Sbjct: 191 HCSIPMKGMVDSFNVSVAAGILMHHAVCDRTSRLGSHGDLTPEETQ 236


>gi|159113391|ref|XP_001706922.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803]
 gi|157435023|gb|EDO79248.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803]
          Length = 1127

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
            N+G +AR    F L  L L            ++ S  AD  ++       ++E +   + 
Sbjct: 985  NLGGLARTAEVFGLDTLVL-GNTSFALDPSFKAMSMTADMWLN-------IEE-VQPCNL 1035

Query: 87   IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
            +     + ++++  V   + +  V  +     +   ++ G ER G   E ++L +  +  
Sbjct: 1036 VQWIAEKKKDDYSVVCLEQSSRSVYLQDADLPRKAVLVLGNERKGCPEEILSLCDMTVEI 1095

Query: 147  PVNPLFPSLNISQAVLLMVWEC 168
                   SLN+  +  + VW+ 
Sbjct: 1096 QQLGNIRSLNVHVSCAIFVWKW 1117


>gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides BS1]
 gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides BS1]
          Length = 247

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 11/166 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             +    +++L       N+G + R         + LV  +    +     +SA A    
Sbjct: 93  PRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDGVILVEGKGSPVNAAVHKASAGAVSHS 152

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +V  +L+  +  L          R     ++A    A      +        I G E
Sbjct: 153 RLCKV-KSLQACLKML----------REEGFQIIAADMHAEKNYTEVDFRIPSAFIMGTE 201

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             GL    +   + ++  P+     SLN+S +  ++++E M   ++
Sbjct: 202 EKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLYEAMRQRLL 247


>gi|290968976|ref|ZP_06560511.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780932|gb|EFD93525.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 270

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P++ L   Q   N+G + R     +   + L        ++K   S+  A      + + 
Sbjct: 119 PIVYLQSVQDPGNLGSIIRTAAAADAGAVVLSRDSVDVYNDKVLRSAMGAVF---KIPLV 175

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +++     D+  + A   R     + +     +      ++   Q   + FG E  GL  
Sbjct: 176 TDV-----DMETLQAYCLRT---HRRLTGAAASGSSSYTQLDYAQARVLAFGNEGNGLAL 227

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +      ++ P+ P   SLN++ AV +++++  E  
Sbjct: 228 PFLQACAETVTIPMRPETESLNLAAAVGIVLYKAWERQ 265


>gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|256112654|ref|ZP_05453575.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457]
 gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
 gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90]
          Length = 297

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + V +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           fluorescens Pf-5]
          Length = 254

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R           LV P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAGALA-VLV-PKDKSATLTPTVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      +I  T               EA   L ++  +G  + II G E  G+
Sbjct: 159 LARTLEKLQQRGLWIVGTAG-------------EAEQELYDQDLTGPTI-IIMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++  P+     SLN+S A  + ++E M   
Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAMRQR 244


>gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
           17982]
          Length = 290

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS------NLKE 79
           N+G   R+     +    LV P+   P   ++   S      +   R+ S       L+E
Sbjct: 146 NVGAAFRSAAALGIDT-VLVTPQCADPLYRRSVRVSMGTVFQVPWTRLESWPGDIATLQE 204

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A          T  +       ++  + A  L         + ++ G E  GL    IA 
Sbjct: 205 A--------GFTVASLALSDDSVSLDDFAA-LPALQGPDARLAMVMGTEGDGLGRHTIAA 255

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
           S+  +  P++    SLN++ A  ++ W
Sbjct: 256 SDYTVKIPMDHGVDSLNVAAASAVVFW 282


>gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 248

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 24/171 (14%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  A   ++IL       N G + R      +  + +   R    +     +S  A   +
Sbjct: 96  QQEANPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHV 155

Query: 69  DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              RV +NL +A+  L     +++ T  T      +                  +   + 
Sbjct: 156 PIARV-TNLSQALDQLKANGFWVFGTDVTGTPSYKW-----------------NTSGKLA 197

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +I G E  G++       + +I+ P+     SLN S A  ++++E   N +
Sbjct: 198 LIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRNKL 248


>gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1]
          Length = 248

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 21/173 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66
           +      +++L       N+G   R       T   +V P+D     +   R  +  A  
Sbjct: 92  RTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVACGAAE 149

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           VI  V V +    L++      ++  T               EA   + ++  +G  V +
Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EAEQEIYQQDLTGPLV-M 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I G E  G+        + ++  P+     SLN+S A  + ++E +       
Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRRAKR 248


>gi|167586870|ref|ZP_02379258.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ubonensis Bu]
          Length = 260

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 19/172 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P L     G  ++L   Q   N+G + R+     +       P   +  S K   S 
Sbjct: 103 PSHP-LPARVTGTSVVLDGVQDAGNVGSILRSAAAAGVKH-VFCAPGTAYAWSSKVLRSG 160

Query: 62  ANADCVIDSVRVFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A  ++    +  +++  A+A+                 V                   
Sbjct: 161 MGAHFLLS---IHEDIEAGALAE------------RIGVPVALTDSHGAQAIYDCDLAGP 205

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V  +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 206 VVWVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|311746904|ref|ZP_07720689.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
 gi|126578593|gb|EAZ82757.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
          Length = 234

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 31/171 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL--------VNPRDGWPSEKARS 59
           L    +   ++L +     N   V R    F +  + +        VNP        ++ 
Sbjct: 33  LAQRTRHFTVVLENIYKPHNASAVLRTCDCFGIQDVHIIEKTREYKVNP--FVTRGASQW 90

Query: 60  SSANAD---CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
            + +        ++  +  FS+LK        IY T+   +      L P E        
Sbjct: 91  LTLHKYFQPEEPENAVINCFSSLKS--NGFK-IYGTSPDPQTRPIQDLDPNE-------- 139

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 + ++FG E  G++NE    ++ ++  P+     S NIS A  L +
Sbjct: 140 -----KIALVFGNEHEGISNEVKNAADGLVHIPMRGFTESFNISVAASLFL 185


>gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
 gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
          Length = 253

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L N+   P +++L   Q   N+G   R+     +  + +   R    +   + ++A A  
Sbjct: 98  LHNNLNPPFLLVLDGVQDPHNLGACLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAE 157

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V  S+   +NL   +           R +          ++   L         + ++ G
Sbjct: 158 V-TSLFTVTNLATCLE----------RLKKCGIWCYGLDQSGTRLIYDAPLTGPLALVLG 206

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GL        + +++ P+     SLN+S A  + ++E +   
Sbjct: 207 AEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVAAGVGLFEVVRQR 252


>gi|87200913|ref|YP_498170.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136594|gb|ABD27336.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 267

 Score = 57.8 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+G + R         L L++      S +A  +S  A     +   R    +    A
Sbjct: 130 PGNLGTMLRTADAVGAGGLILIDDCVDPFSVEAVRASMGAIFTEKLAQARWDEFIAWLRA 189

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A + R+         P   A  +           ++ G E  GL  +     + 
Sbjct: 190 GEGQLVAASLRDA-------VPYRGAPYVA-------PCFVMVGNESRGLPEDYELACDL 235

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
            ++ P+     SLN + A  ++ +E +
Sbjct: 236 RVTMPMKGRADSLNAAVAGAVLAYEVL 262


>gi|323341718|ref|ZP_08081951.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464143|gb|EFY09336.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 170

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA--NADCV-IDSVRV 73
           ++L +P++ +N G + R         L L+ P      EK    S    +D + +     
Sbjct: 4   VVLYEPEIPQNTGNIMRTCVASGAA-LHLIEPLGFILDEKRVKRSVMDYSDDLNLTRHLD 62

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + +  + +    F        R    +      +AIV  +       + ++FG+E  G+ 
Sbjct: 63  WESFLKTVKGPVFYL-----TRYGEYTHSDFDYSAIVETD-------IYLVFGKESTGIP 110

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +    +     P+ P   S+N+S  V + V+E +  
Sbjct: 111 KSILKENYDHCFRIPMAPNARSMNLSNTVAICVFEVLRQ 149


>gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
           L2-32]
 gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
           L2-32]
          Length = 330

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 172 AARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPV 231

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI         + + R  +   L     A ++ E  F    + ++ G E  
Sbjct: 232 ARVV-NLTKAIE--------SLKERGYYSVGLDGGGDA-LVGETGFETDPLVVVLGSEGN 281

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL+       ++I   P++ +  SLN S A  + ++
Sbjct: 282 GLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|297201026|ref|ZP_06918423.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197712190|gb|EDY56224.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 248

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 20/158 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
               PV++L +P+   N G V R    F  T +      D W     R  +      +  
Sbjct: 106 PRTTPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----LHF 160

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 L  A                     +   +        +    +  + FG ER 
Sbjct: 161 ATAVERLTVA---------------ELPPGPVFALDPEGDDIRGVKLPDDAVLAFGSERS 205

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL+ E  A +  +++ P+ P   S N++ +V + ++  
Sbjct: 206 GLSPELRARAGHLVALPMRPQVSSYNLATSVAMTLYHW 243


>gi|21674078|ref|NP_662143.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647231|gb|AAM72485.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 169

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 11/145 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R      + ++ +       P ++   ++  A   +   R F++  EAI     
Sbjct: 29  NVGAMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQETVPW-RHFADPVEAI----- 82

Query: 87  IYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
               T   R + K   L   E +   +        + +I G E  G+ +  ++  + +I 
Sbjct: 83  ----TVLKRESKKIFGLEIAENSRSYSSLTAGDFPLALIVGNEVEGIGDALLSHCDGVIE 138

Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170
            P   +  SLN++ A  + ++EC+ 
Sbjct: 139 IPQYGVKHSLNVAVAAGVALFECVR 163


>gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
 gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
          Length = 254

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           K P II+  + Q   N+G + R         + +   R    +     +SA A   I   
Sbjct: 106 KPPFIIICDEIQDPHNLGAIIRTAEAAGADGVIIPKRRSATVNPTVFKTSAGAAAWIKIA 165

Query: 72  RV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV      +K       ++Y                +     +++   SG  + ++ G E
Sbjct: 166 RVSNLVDTIKTLKKHGVWVYG--------------AEADGTPIDKADLSGA-LALVIGSE 210

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +GL        + ++S P+     SLN S    ++++E ++
Sbjct: 211 GFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMYEAVK 252


>gi|57168674|ref|ZP_00367806.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
           RM2228]
 gi|305432697|ref|ZP_07401857.1| RNA methyltransferase [Campylobacter coli JV20]
 gi|57019955|gb|EAL56635.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
           RM2228]
 gi|304444206|gb|EFM36859.1| RNA methyltransferase [Campylobacter coli JV20]
          Length = 227

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 19/151 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID---SVRVF 74
           IL       NIG + R  +   +  L  +  R     E    +S+ A   ++   +  +F
Sbjct: 87  ILYGISDVGNIGAIVRTAYALGVDGLIFIGERLAM--EGVIRTSSGAALDLEIALNNDIF 144

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + L E +  + F    +A                     ++  G+   +I G E  GL+ 
Sbjct: 145 TVLNE-LKQVGFKLFASASGGKQIHHY------------KVDKGKK-ALILGSEGLGLSA 190

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + I   +  +   +   F SLN+S A  ++ 
Sbjct: 191 KIIKKCDECVGIEMKNNFDSLNVSVAFAILC 221


>gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 278

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 54/168 (32%), Gaps = 33/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------D 65
           + L   +   N+G + R +       + L+       S +   ++  +            
Sbjct: 133 VALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLETVRATMGSIFSIPLYRFDES 192

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++    F            +  T  +   +++ +              F    V ++ 
Sbjct: 193 AFLNWSAHFK---------GMVVGTHLKGSIDYRKID-------------FKNGPVILLM 230

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E+ GL +      + +   P +    SLN++ A  +M++E   + +
Sbjct: 231 GNEKQGLPDTLANRCDQLARIPQSGRADSLNLAVATAIMLYEIRRSYL 278


>gi|297531654|ref|YP_003672929.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
 gi|297254906|gb|ADI28352.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
          Length = 247

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 28/199 (14%)

Query: 7   QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANA 64
           ++ N     + +L++      N   V R    F +  + +V  +  + P+      +   
Sbjct: 40  EVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA--- 96

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                ++    ++K AIADL      +YA  +        V             I   Q 
Sbjct: 97  -DQWLTLHHKPDIKTAIADLKSQGYQVYA--SYFGEGTIPVSD-----------IDLSQP 142

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             ++FG E  G++ E + L++     P+     S NIS A  L +++  E +   + ++ 
Sbjct: 143 TALLFGNEHSGVSEEALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRH- 201

Query: 181 KEQNTPATKGELLSFLDYL 199
                    GE  +  +  
Sbjct: 202 ----YYLLPGEKKALYEQW 216


>gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
 gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
          Length = 243

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L      P +++L       N+G   R+     +    +V PRD     +  A+  + 
Sbjct: 86  PGLLEGIDTPFLLVLDGVTDPHNLGACLRSADAAGVHA-VIV-PRDRSAQLNATAKKVAC 143

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  +RV +    L+       ++  T                 A     +     
Sbjct: 144 GAAENVPLIRVTNLARTLRLLQEMNVWVVGTAG--------------EADHTLFQSKMTG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 190 PMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVRQR 242


>gi|308044253|ref|NP_001183802.1| hypothetical protein LOC100502395 [Zea mays]
 gi|238014636|gb|ACR38353.1| unknown [Zea mays]
          Length = 347

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+    R+     +  + +++          R  S  A+  +D + ++++  E      
Sbjct: 162 GNVSAAFRSADALGVQSVHVISCDSSKRYRDNRHVSMGAEKWLD-IEIWNSPAE------ 214

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                +A  +  ++          V    +   Q   I+ G E  G++++ + LS+   S
Sbjct: 215 ---CFSALKKRGYRIATTYLGTDSVCVYDMDWSQPTAIVVGNELRGISDDALELSDLHCS 271

Query: 146 FPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
            P+  +  S N+S A  +++        + +      + E+N          +L + E +
Sbjct: 272 IPMKGMVDSFNVSVAAGILMHHAVCDRVSRLGHHGDLLPEENRILLA---EFYLRHREST 328

Query: 203 LEERGYFRPVEKKKKMLDDL 222
                +     K  K++  L
Sbjct: 329 -ATIVHEYAKMKAGKVMTRL 347


>gi|229817954|ref|ZP_04448236.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
           20098]
 gi|229784558|gb|EEP20672.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
           20098]
          Length = 290

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           +Y T  R       VL        +           ++FG E  GL  + +     I+S 
Sbjct: 211 VYGTRKRKPERLPDVLDA------MRGEEHRKDGYAVLFGNEARGLNGKTLEQCQRIVSI 264

Query: 147 PVNPLFPSLNISQAVLLMV 165
           P+     SLN++ +  +++
Sbjct: 265 PMYGKAESLNLATSAAIIL 283


>gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HTCC2255]
 gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HTCC2255]
          Length = 264

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANAD 65
             +N  K  ++IL       N+G + R+   F   +  +   R+  P   A + +++ A 
Sbjct: 108 APRNDKKARLVILDRVTDPHNVGAILRSAEVFG-ARAVIATARNSAPETGALAKTASGAL 166

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                +RV  NL  +I  L     ++       +N+   +             +     +
Sbjct: 167 ERQPYLRV-RNLATSIKSLQEMGYYVVGLDGTAKNSIDDI-----------AELHQNSPL 214

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I+ G E  GL        + ++       F SLN+S A  + ++
Sbjct: 215 AIVLGAEGPGLRELTKQTCDELVKIDYAATFGSLNVSNATAVALY 259


>gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
           DSM 12260]
 gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
           DSM 12260]
          Length = 261

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 33/175 (18%)

Query: 16  VIILVDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           V++L   +   N G + R+         L  LR    R   P+     +S  A   +   
Sbjct: 106 VVVLDHLEDPHNAGAIVRSAEAVGALAALLPLR----RGALPTGAMVKASTGAALRLPLG 161

Query: 72  RVFSN------LKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           R+ +       L+EA     ++    A   R+ F++ L+P+               + ++
Sbjct: 162 RIGNVGQDLRLLQEA---GLWVVGLEAQGERSLFETPLSPR---------------MALV 203

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            G E  GL    +   + ++  P+     SLN S A  L ++E   +   SS   
Sbjct: 204 VGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGLYEWFRSVTPSSTFP 258


>gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 224

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 13/168 (7%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +LV+      N+  + R      + +   +  RD   +  + +  +     +++      
Sbjct: 24  VLVEAVNKPHNLSAILRTCDAAGVFEANFICKRDEVKTFNSTAQGSQKWVKLNN---HET 80

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
              A++ L          +  FK        +          +N   + G E+WGL++E 
Sbjct: 81  TISAVSHL---------KKKGFKLYGTTLNDSSTDYRNFDYAENTCFVLGAEKWGLSDEL 131

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           I+  +  I  P+  +  SLN+S A  ++++E +    + S   +  + 
Sbjct: 132 ISKVDESIFIPMTGMVQSLNVSVAASILLFEAIRQRQIKSLLPLNGEG 179


>gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Mississippi]
          Length = 244

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRV 73
           V+IL       N+G + R+   F+   + L  P    PSE      +S+ A  ++  V+V
Sbjct: 93  VVILDRVTDINNVGAIVRSAACFDADAVIL--PEHHSPSESCTITKASSGAADIVPVVQV 150

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 ++    + ++ Y                          I   +   II G E  
Sbjct: 151 GNLVKTMEYLKQNGYWCYGM--------------DAGGDKALHEISFCERRAIILGSEGK 196

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G+        + ++  P++    SLN+S A  + ++
Sbjct: 197 GIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 232


>gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
           16795]
 gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 14/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL +     N+G + R         + +   R    +     +SA A   +   +V + 
Sbjct: 101 IILDEITDPHNLGTIIRTADAVGAHGVIIPKRRSVHITSVVAKASAGAVEYVPVCKVTN- 159

Query: 77  LKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                       A T +  +     + A      V  E+  +G  + ++ G E +G++  
Sbjct: 160 -----------IANTIKQLKKEGLWIAAADMDGGVFYEQDLTG-PLALVIGSEGFGVSRL 207

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                + ++  P+     SLN S A  ++++E     +
Sbjct: 208 VKQNCDFVVKMPMIGNVSSLNASVAGGILLYEIFRQRM 245


>gi|17988081|ref|NP_540715.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|256045941|ref|ZP_05448813.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 297

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + V +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|332519939|ref|ZP_08396403.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044498|gb|EGI80692.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 176

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 10/163 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q S    +I+L + +   NIG V R    F + ++ L       P +    ++  +   +
Sbjct: 19  QASKTPIIIVLDNIRSLNNIGSVFRTSDAFLVEKIYLCGITATPPHKDINKTALGSTDAV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGR 127
                     E I  L          ++     +   E A +LN+          ++FG 
Sbjct: 79  SW-EYAKTTMEVIEKLKI--------KDVKICSIEQAENATMLNDFTVEKNTTYALVFGN 129

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  G+    +  S+++I  P      SLNIS +  ++VW+   
Sbjct: 130 EVKGVDQNIVNASDSVIEIPQFGTKHSLNISVSCGVVVWDLFS 172


>gi|207723369|ref|YP_002253768.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588568|emb|CAQ35531.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 245

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 17/166 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +   +IL   Q   N+G + R      +  + +        S K   +   A   
Sbjct: 93  LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAGMGAHFH 152

Query: 68  IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++ V      +   A LH  + AT++  R+    V                G+ VG +FG
Sbjct: 153 LNIVEHC-TFESMHARLHVPLLATSSHARHAVFDVPL--------------GKPVGWVFG 197

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G++ + +++    IS P      SLN++ A  + ++E +   
Sbjct: 198 NEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQR 242


>gi|187933079|ref|YP_001887256.1| tRNA/rRNA methyltransferase [Clostridium botulinum B str. Eklund
           17B]
 gi|188589587|ref|YP_001922195.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251780763|ref|ZP_04823683.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|187721232|gb|ACD22453.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           B str. Eklund 17B]
 gi|188499868|gb|ACD53004.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243085078|gb|EES50968.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 153

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 29/163 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ--LRLVNPRDGWPSEKARSSSANADCVID--SVR 72
           I+L  P++ +N G +AR      LT   L L+ P      EK    +           + 
Sbjct: 5   IVLYQPEIPQNTGNIARTCV---LTDSKLHLIKPLGFDIDEKHVRRA--GLDYWKYLDLE 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  + +  +               N +  L+   A    +E  F   +  I+FGRE  G+
Sbjct: 60  IHESYEAFME-----------KYKNERIFLSSTHAGDYYSEISFQKGD-FIMFGRESSGV 107

Query: 133 TNEEIALSNAIIS---FPV-NPLFPSLNISQAVLLMVWECMEN 171
                   + +I+    P+      SLN+S  V ++ +E +  
Sbjct: 108 P----ESIHEVITGMRIPMIQSSTRSLNLSNTVSIVAYEALRQ 146


>gi|291279760|ref|YP_003496595.1| rRNA methylase [Deferribacter desulfuricans SSM1]
 gi|290754462|dbj|BAI80839.1| rRNA methylase [Deferribacter desulfuricans SSM1]
          Length = 157

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 19/161 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSV 71
           ++ L +P++ +N G +AR     + T+L LV  R G+         A  D       + +
Sbjct: 2   IVALFEPEIPQNTGNIARLCAVTD-TKLLLVG-RLGFSISDKYLKRAGMDYWNYLDWEWI 59

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +  +   +   +  + Y   ++    + + ++          R F+     +IFG E +G
Sbjct: 60  KSINEFFDKYNNKEYSYFFISKFGKKYYTEIS----------REFNFNKSILIFGNESYG 109

Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L  E+I    S+ +   P+     SLN+S +V ++V+  +E
Sbjct: 110 L-REDIRNLYSDRLYRIPMKEGMRSLNLSNSVAIVVYHLLE 149


>gi|283777832|ref|YP_003368587.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283436285|gb|ADB14727.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 170

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           +IL  P++  N G + R+       +L LV P     SEK    +         +     
Sbjct: 15  VILWHPEIPPNTGNIGRSCVAVG-AKLWLVRPLGFDISEKQLRRA--GLDYWQHLEWEAV 71

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L E  A +              +  L  K      ++  +   +V ++FG E  GL  
Sbjct: 72  DSLDEIRAKI-------PEPFEQQRVWLFTKFGQSRYSDVTYEQGDV-LLFGCESAGLPE 123

Query: 135 EEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E ++   S+A +  P+ P   SLN+S +    ++E +       + 
Sbjct: 124 EIVSQFPSSAKLRLPMRPQVRSLNLSSSATAAMYEVIRQIGTPEDA 169


>gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
 gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
          Length = 275

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           T    ++ + A   V + V+     N G + R         + L        + K   +S
Sbjct: 110 TTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRAS 169

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           A +   I  V V  +   A+       A          SVL  +++   +++ + +    
Sbjct: 170 AGSIFAIP-VIVAPDTSAALG------ALRGAGLQALASVLDGEKSLDDIDQLLEA--PT 220

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +FG E  GL+ E  A ++  +  P++    SLN++ A  + +++    
Sbjct: 221 AWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAICLYQSARA 270


>gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 261

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           Q + ++ G ER GL  E+ A   A++S P+     SLN++ A  ++++E +   
Sbjct: 208 QPLILLMGSEREGLDAEQQAQCQALVSIPMRGQADSLNLAVATGVLLYEILAQR 261


>gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas
           putida BIRD-1]
          Length = 248

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 21/169 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC 66
           +      +++L       N+G   R       T   +V P+D     +   R  +  A  
Sbjct: 92  RTETPPLILVLDGVTDPHNLGACLRTADAAGATA-VIV-PKDKSATLTPVVRKVACGAAE 149

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           VI  V V +    L++      ++  T               EA   + ++  +G  V +
Sbjct: 150 VIPLVAVTNLARTLEKLQQRGLWVVGTAG-------------EADQEIYQQDLTGPLV-M 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 196 IMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 285

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 7   QLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           +L  +A G P+I+L       N+G + R+   F  + L + +      +     S++ A 
Sbjct: 128 ELARAADGRPLIVLDQVTDPHNVGAILRSSAVFGASGLVMTHRHSPPLNGVLAKSASGAL 187

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            +I    + +NL  A+ +L          R    +++     A    E +   +   ++ 
Sbjct: 188 ELIPVA-LVANLARAMEEL----------REAGFALVGLDGEAETAIEDLDWSRPTALVM 236

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           G E  GL        + +     +    SLN+S
Sbjct: 237 GSEGKGLRELTRKTCDTLARISTDGPVASLNVS 269


>gi|257146507|emb|CAX30793.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Glycaspis brimblecombei]
 gi|257146511|emb|CAX30796.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Diaphorina citri]
          Length = 239

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 12/148 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  V R      + Q+  +  ++   S  A ++ +N       VR  ++++ AI+  
Sbjct: 30  PHNISAVIRTADAVGIPQIHAIWCKNSSKSLSAAAAGSNHWV---KVRTHASIENAISAC 86

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  A  +     +      AI    +I   Q   II G+ER G++ + +AL++  I
Sbjct: 87  K-----AAGIQILAAHLTN---QAIDFR-QIDYNQPTCIILGQERAGISKQALALADHNI 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
             P+  +  SLN+S A  L+++E     
Sbjct: 138 HIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a]
          Length = 254

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           K P II+  + Q   N+G + R         + +   R    +     +SA A   I   
Sbjct: 106 KPPFIIICDEIQDPHNLGAIIRTAEAAGADGVIIPKRRSATVNPTVFKTSAGAAAWIKIA 165

Query: 72  RV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV      +K       ++Y                +     +++   SG  + ++ G E
Sbjct: 166 RVSNLVDTIKTLKKHGVWVYG--------------AEADGTPIDKADLSGA-LALVIGSE 210

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +GL        + ++S P+     SLN S    ++++E ++
Sbjct: 211 GFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMYEAVK 252


>gi|193214688|ref|YP_001995887.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088165|gb|ACF13440.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 219

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 72/178 (40%), Gaps = 13/178 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +++ +     N+  + R      + ++  V  R    +++  +S++ A+  +D V++ +
Sbjct: 24  TVVMENVNKAHNLAAIIRTCDAVGIPKVHAVALRPEIRTKQ--NSASGANRWVD-VQIHN 80

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + ++          +T R       V      A       F+ +   ++ G E  G++  
Sbjct: 81  STED--------VFSTLRQGGFQIFVAHFSPQATDFRAVDFT-KPTALVVGAEWEGISET 131

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            I+L++  +  P+  +  SLN+S A  +M++E           +    +  AT   LL
Sbjct: 132 AISLADGSLYVPMVGMVESLNVSVATAIMLFEAQRQRTEKGFYDKPRLDE-ATYQRLL 188


>gi|91224994|ref|ZP_01260253.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
 gi|91190240|gb|EAS76510.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
          Length = 227

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 17/164 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVFSNLKEAIA 82
             N+  V R      L ++        WP +      +SA A   ++ V    +++ AI 
Sbjct: 30  PNNVSAVIRTADATGLHKVH-----AIWPDKMRTLSHTSAGARNWVE-VDTHDSIETAIT 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L              + ++       V    I   +   II G E+ G + +   L+  
Sbjct: 84  EL---------KAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLAEQ 134

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            I  P+  +  SLN+S A  ++++E       +   + +E   P
Sbjct: 135 DIIIPMVGMVQSLNVSVASAVILYEAQRQREAAGMYDREESALP 178


>gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
 gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
          Length = 229

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 12/169 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL   +   N+  + R+     + +   V+ R+     +  +  +     + +   ++
Sbjct: 23  TVILEHVEKSHNLSAILRSCDAVGIIEAHAVSLRERLRIFQNTALGSQKWVRLRN---YN 79

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++  AI  L          +  FK          +             + G E+WGL+ E
Sbjct: 80  SIVPAITQL---------KQRGFKIYGTNLGIGSIDYRNCDFLGPSSFLLGAEKWGLSQE 130

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
              L +  I+ P++ +  SLN+S A  ++++E +    V+       + 
Sbjct: 131 AAELVDQSITIPMSGMVQSLNVSVATAILLFEVLRQRQVAETLPTNGEG 179


>gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           selenitireducens MLS10]
          Length = 255

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L + +   N+G + R         + +   R    +     +SA A   +   RV +  
Sbjct: 103 VLDELEDPHNLGSILRTADASGAHGVIIPKRRSVGLTSTVAKTSAGAIAHVPVARVTNLA 162

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +   T                   V  E +     + ++ G E  G++ 
Sbjct: 163 RTMDELKKQGLWFVGT--------------DAKGDVSYEGMTVDLPLALVIGSEGKGMSR 208

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 + ++S P+     SLN S A  L+++E + 
Sbjct: 209 LVKEKCDFLVSIPLMGKVTSLNASVAASLLMYEVLR 244


>gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           dentium JCVIHMP022]
          Length = 329

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F    + L   R    +  A   SA A   +   RV  N
Sbjct: 178 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV-N 236

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AI         + + R  +   L     A ++ E  F    + ++ G E  GL+   
Sbjct: 237 LTKAIE--------SLKERGYYSIGLDGGGDA-LVGETGFETDPLVVVLGSEGNGLSRLV 287

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  + I   P++ +  SLN S A  + ++
Sbjct: 288 RSTCDVIAGIPMSSMVESLNASVAAGITLY 317


>gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 456

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 23/167 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SNLK 78
             N+G + R+        + L   R    +      +A A   +   RV         LK
Sbjct: 263 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLK 322

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A    + +                  E      E       + ++ G E  GL+     
Sbjct: 323 DA---GYRVVGLA--------------EEGDQTLEEADLEGPLVVVTGSEGQGLSMLTRR 365

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             + +I  P+  + PSLN S A  L ++E    S +   +       
Sbjct: 366 HCDQLIRIPLRGVTPSLNASVATALCLYEVARRSWMKGLRGQNPSPQ 412


>gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 251

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 18/182 (9%)

Query: 1   MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +T      +++ K P+  +L       N G   R      +  + +   R    +     
Sbjct: 84  ITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGAGVDAVVIPKDRSASINATVSK 143

Query: 60  SSANADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            S+ A  VI  + V     ++KE      ++  T               + A      + 
Sbjct: 144 VSSGASEVIPVITVTNLVRSMKEMQEAGVWLVGT--------------DDEAEKSIYDLD 189

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + I+ G E  G+        + ++  P+  +  SLN+S A  + ++E +   +   
Sbjct: 190 LTGPIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLYEALRQRLTKV 249

Query: 177 EK 178
            K
Sbjct: 250 AK 251


>gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 243

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 13/161 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+ Q      +IIL   Q   N+G + R   +F+   + L        +EK   S+  A 
Sbjct: 91  PEQQALTSDKIIILDGVQDPGNLGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGAL 150

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++ +R  + L  AI +L             +K        AI L+ ++   +   +I 
Sbjct: 151 FHLNIIR--TELLTAIEEL---------KEKGYKIYGTSLHEAIPLS-QVHPKKRHALIM 198

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  G+  E +  ++  +   ++  F SLN++ A  + ++
Sbjct: 199 GNEGKGVREEILCQTDQNVYIEMD-TFESLNVAVAAAICMY 238


>gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 279

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L   +   N G V R         + L +      + K+  +S  + 
Sbjct: 114 EEIVAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSL 173

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        +++A+A L      +A  R          +    L+     G     +F
Sbjct: 174 FHLPVAVGVP-VEQAVAGLK-----SAGVRILAADGAGEDDLDAELDAGTM-GGPTAWVF 226

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E WGL  E  AL++A++  P++    SLN++ A  + ++      
Sbjct: 227 GNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQ 273


>gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis
           SP1PR4]
          Length = 263

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 10/164 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + L   R    +     +SA A   +   +V         
Sbjct: 104 EDPHNLGALLRTADGAGVDGILLPERRSAPITAVVAKTSAGATEHVRIAKVT-------- 155

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + + A     ++N   +   +       +  F+  +  ++ G E  GL +      + 
Sbjct: 156 --NLVRALERMKKDNIWVIGLDERGTPDYTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDY 213

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           ++  P+     SLN+S A  ++++E        S     +Q  P
Sbjct: 214 LLRIPMAGGVSSLNVSVAGAVVMYEVARQRRAPSAPPPVKQKKP 257


>gi|170781630|ref|YP_001709962.1| putative rRNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156198|emb|CAQ01340.1| putative rRNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 266

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTNEEIALSNAIISFPVN 149
           R R     VLA       L     SG        +FG E  GL +E +AL++  +  P+ 
Sbjct: 182 RVRAAGLQVLAADVKGDDLLAERTSGGLAGPTAWLFGNEARGLQDEHLALADRAVVVPIY 241

Query: 150 PLFPSLNISQAVLLMVWE 167
               S+N++ A  + ++E
Sbjct: 242 GQAESMNLATAASVCLYE 259


>gi|163761614|ref|ZP_02168685.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43]
 gi|162281210|gb|EDQ31510.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43]
          Length = 155

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 22/167 (13%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              P+I L  P +  N G + R      +  + ++ P     S++A   +      I+  
Sbjct: 1   MTKPLIALYQPDIPGNTGAIMRLGACMGIG-IHIIGPAGFDLSDRALKRA--GMDYIEMA 57

Query: 72  RV--FSNLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +      +E            +  TT        +V    +    L+ +        ++
Sbjct: 58  TLTRHDGWEEFEAWRKAEGRRLVLMTT------KSAVSYMDDTVQTLSAQD------VVL 105

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           FGRE  G        ++  ++ P+     SLN++ +V ++  E    
Sbjct: 106 FGRESVGAPERVHDAADLRLTIPMIEGRRSLNLAMSVAMVAGEINRR 152


>gi|46911829|emb|CAG18627.1| putative tRNA methyltransferase [Photobacterium profundum SS9]
          Length = 267

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 18/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81
             N+  + R      + ++  V     WP E  R  S   A A   ++ +    N+ +AI
Sbjct: 63  PNNVSAIIRTADAVGIHKVHAV-----WPKENMRVLSHTSAGARNWVE-LDTHDNMVDAI 116

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                   T  + +          + AI   + +   +   II G E+ G+T E +A ++
Sbjct: 117 --------TQLKAQGMQILATNLSDTAIDFRD-VDYTKPTAIILGGEKNGITAEALAQAD 167

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             I  P+  +  SLN+S A  L+++E       +     ++   P
Sbjct: 168 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 212


>gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD]
 gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD]
          Length = 260

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 18/169 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
             L        ++L   Q   N+G + R+     +       P   +  S K   S   A
Sbjct: 105 QPLPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMGA 163

Query: 65  DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             ++    +  +++ +A+A         AR       V                   V  
Sbjct: 164 HFLLS---IHEDVEPDALA---------AR---LDVPVALTDSHGAQAVYDCDLAGPVAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 209 VFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 267

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 14/169 (8%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A ++ N     V + V      N G + R         +            K   +SA 
Sbjct: 108 SAGKILNGKPNLVSVPVLTSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAG 167

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   I   R   N+K+ +  L          R +   +LA      V        Q    
Sbjct: 168 SLFHIPVAR-DPNIKDVLGQL----------RKSGMQILATAADGEVDLAEADLSQPTAW 216

Query: 124 IFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG E  GL   E+   ++  +  P+     SLN++ A  + ++E  + 
Sbjct: 217 LFGNEAHGLG--ELQEEADMRVRIPILGRAESLNLATAASICLYESAKA 263


>gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
 gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
          Length = 248

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L +     N+G   R       T   +V P+D     +   R  +  A   I  + V +
Sbjct: 102 VLDNVTDPHNLGACMRTADAAGAT--AVVVPKDKSAQITPTVRKVACGAVDNIP-LVVVT 158

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL  A+  L     ++  T                 A     +I     + ++ G E  G
Sbjct: 159 NLARALRTLQDLNVWVVGTAG--------------EADKSLYQIDFKGPLALVMGAEGKG 204

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +        + + S P++    SLN+S A  + ++E +     +
Sbjct: 205 MRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFEAVRQRHAN 248


>gi|297518058|ref|ZP_06936444.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50]
          Length = 174

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 9/137 (6%)

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +S+A        V+    + +A+A L        + +          + A+   E I   
Sbjct: 6   ASAAAGSNSWVQVKTHRTIGDAVAHL--------KGQGMQILATHLSDNAVDFRE-IDYT 56

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +   I+ G+E+ G+T E +AL++  I  P+  +  SLN+S A  L+++E       +   
Sbjct: 57  RPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMY 116

Query: 179 NVKEQNTPATKGELLSF 195
             +    P  + + L F
Sbjct: 117 LRENSMLPEAEQQRLLF 133


>gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1]
          Length = 255

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 27/172 (15%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC---- 66
              +IIL       N+G   R+          +V P+D     +      +  A      
Sbjct: 101 TPLIIILDGVTDPHNLGACLRSADAAGAH--AVVMPKDNSAPLNATVSKVACGAAESIPV 158

Query: 67  --VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V +  R    L++      +I+ T                 A              I+
Sbjct: 159 YAVTNLARTMKKLQD---QGVWIFGTAG--------------EATQTIYEQDLTIPTAIV 201

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G E  G+        + ++  P+  +  SLN+S A  + ++E +    V +
Sbjct: 202 MGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYEVVRQRAVKA 253


>gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 336

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 56/164 (34%), Gaps = 19/164 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +N++   ++ L       N+G + R+   F+   + +   R    +      +A A   +
Sbjct: 185 RNTSNPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHL 244

Query: 69  DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              RV  NL  A+ +L      +   +                  +   +      + +I
Sbjct: 245 PVSRVV-NLNRALEELKKNGFMVIGLSG--------------DGQLSISKFHEKTPLVVI 289

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            G E  G++       + ++  P+     SLN S A  + ++  
Sbjct: 290 VGAEDKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLFHL 333


>gi|114332105|ref|YP_748327.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114309119|gb|ABI60362.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas eutropha
           C91]
          Length = 154

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           +IL  P++  N G + R   N + TQL L+ P     S++    +       +  R  V 
Sbjct: 4   VILHQPEIPPNTGNIIRLCANTS-TQLHLIKPLGFNLSDRQLKRA--GLDYHEWARLTVH 60

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +L   ++          TT   ++  K      +                 +FG E  G
Sbjct: 61  EDLASCLSLMDGCRIFAVTTKATKHYDKVDYTTDDV---------------FLFGSETCG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  E +     +  I  P+ P   SLN+S +  ++++E    +     
Sbjct: 106 LPVEVLEDFSQDRRIRIPMVPSSRSLNLSNSAAVIIYEAWRQTGFDGG 153


>gi|255534645|ref|YP_003095016.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340841|gb|ACU06954.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 255

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 90  TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149
           T  +NR      ++P++ A +L +     + V ++FG E+ G+T E +  ++  ++ P+ 
Sbjct: 132 TEIKNRGYKILAVSPEKNATMLPDYQLK-EPVALVFGTEKEGVTEEILDFADETVAIPMY 190

Query: 150 PLFPSLNISQAVLLMVWECMENSIVS 175
               S N+S A  +  +E  +  I S
Sbjct: 191 GFTRSFNVSVAAAICFYELKQKLIRS 216


>gi|226331060|ref|ZP_03806578.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
 gi|225201855|gb|EEG84209.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
          Length = 367

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCV--IDSVRVFSNLKEA 80
             N+G + R+  +F +    +++P        A  R++   A+ +  ID+      L + 
Sbjct: 229 PHNVGAIMRSCAHFGVKG--VISPDSAVLESGAAVRTAEGGAEYIQGIDADNFAQTLDKF 286

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
               + + AT++   +                 +      + +I G+E+ GL+   +   
Sbjct: 287 KKAGYTLVATSSHKGSVP-------------LSKAQLPAKMVLILGQEKDGLSESTLNQG 333

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  I         SLN+S A  +++ E    
Sbjct: 334 DMSIYIGGTGHVESLNVSVASGVLLAEWWRQ 364


>gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10]
 gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10]
          Length = 266

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 32/175 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G V++L   Q   N+G + R+        + L        + K   S+  +   +    
Sbjct: 113 NGMVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHL---- 168

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---------- 122
               L+                 +    +   +E    L   +  GQ             
Sbjct: 169 --PVLE----------------GDLLSILPEARERGARLVTTMLEGQRSCFEYDFKGTSW 210

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           I+ G E  G++ E  AL +  I  P+     SLN + A  ++++E +     ++E
Sbjct: 211 IVIGSEGRGVSPEVAALVDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYAAE 265


>gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           pseudintermedius ED99]
          Length = 249

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 17/169 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A Q Q      V+IL   +   N+G + R      +  + +   R    ++    +S  A
Sbjct: 86  AEQAQKEGLSTVLILDGLEDPHNLGSILRTADATGVDGIIIPKRRSVSLTQTVAKASTGA 145

Query: 65  DCVIDSVRVF--SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  +RV   S   + + D  + I    A N  +++ +               +   +
Sbjct: 146 IQHVPVIRVTNLSQTMDVLKDKGYWIAGAEASNATDYRQM--------------QADMPL 191

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ G E  G++       +  I  P+     SLN S A  LM++E   
Sbjct: 192 AIVIGSEGQGMSRRVKEKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR 240


>gi|161936340|ref|YP_128429.2| tRNA guanosine-2'-O-methyltransferase [Photobacterium profundum
           SS9]
          Length = 234

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 18/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAI 81
             N+  + R      + ++  V     WP E  R  S   A A   ++ +    N+ +AI
Sbjct: 30  PNNVSAIIRTADAVGIHKVHAV-----WPKENMRVLSHTSAGARNWVE-LDTHDNMVDAI 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                   T  + +          + AI   + +   +   II G E+ G+T E +A ++
Sbjct: 84  --------TQLKAQGMQILATNLSDTAIDFRD-VDYTKPTAIILGGEKNGITAEALAQAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             I  P+  +  SLN+S A  L+++E       +     ++   P
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYEREKTLLP 179


>gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 670-6B]
 gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 670-6B]
          Length = 242

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + +      ++IL       N+G + R     N++ + +   R    +     ++  A  
Sbjct: 88  KTRQEENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +   +  + + T                     ++    G  + +
Sbjct: 148 HVPIARVTNLNQTLYKLKDEGFWTFGT--------------DMNGTPCHKWNTKG-KIAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G+++      + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|125550794|gb|EAY96503.1| hypothetical protein OsI_18405 [Oryza sativa Indica Group]
          Length = 168

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 33/151 (21%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82
            N+G +AR+   F + ++ +V  RD      +   S  A   +   R F++L  A A   
Sbjct: 20  HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFASLPLARAYLK 73

Query: 83  ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                                 +     A+ +    F  ++   +FG E  GL+ +E  +
Sbjct: 74  DERGCDICG-------------VEITHNALPVTAHPFR-RSTAFLFGNEGTGLSQKECEI 119

Query: 140 SNAIISFPVNPLFP----SLNISQAVLLMVW 166
            +  +  P    +     SLN++ A  +++ 
Sbjct: 120 CDFFVYIP---QYGGGTASLNVTVAASIVLH 147


>gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 249

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 11/148 (7%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V      N G V R         + L        + K   +SA +   I  +        
Sbjct: 104 VGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHD---- 159

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                        + + +   VLA      V  + +        +FG E  GL  + +AL
Sbjct: 160 -------AVGVVTQLKGSGLQVLATVLGGSVPLDEVDLSGPTAWLFGPEAHGLPADVVAL 212

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWE 167
           + A +  P+     SLN++ A  + +++
Sbjct: 213 ATAGVEIPMAGGAESLNVASAAAICLYQ 240


>gi|311740920|ref|ZP_07714747.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304440|gb|EFQ80516.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 18/175 (10%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   ++ +SAK    +L      ENIG + R      +  + L +        ++   S 
Sbjct: 100 PEVSEIVDSAKTIA-VLEGVGDHENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSM 158

Query: 63  NADCVIDSVRVFSNLK------EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                +    +           +A+AD  F               L P   A+ L E + 
Sbjct: 159 GHVLRLPFAHLEGGFTTWQRSLQALADASFTL-----------ISLTPNPEAVHLAEAMH 207

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               V ++ G E  GLT   +  ++     P+ P   SLN++ A  +  +E   +
Sbjct: 208 GLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPGTDSLNVATAAAISFYERQRS 262


>gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 247

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 26/178 (14%)

Query: 6   PQLQNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKA 57
           P L +  + P I+L      V      N G +AR      +    +V P     S    A
Sbjct: 87  PMLYDEGQMPFIVLLDGVTDVR-----NFGAIARTCECAGVH--AIVIPERDSVSVTADA 139

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            ++SA A   +  + V    ++ +    F+       R++   ++     A      +  
Sbjct: 140 VNASAGA---LMRIPVCRE-RDLVTACRFL-------RDSGLQLVGADVDATTNYTSLPM 188

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +GI+ G E+ G++   +      +S P      SLN+S A  +M++E +     +
Sbjct: 189 TPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQHNAN 246


>gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 283

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 24/158 (15%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P+   NIG + R     N+  + + NP+    +     SS      +       +  E I
Sbjct: 141 PEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIAT--GSTTEVI 198

Query: 82  ADL------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             L       +  A TA      K               +   +   I+ G E  GLT E
Sbjct: 199 DFLKAKGINSYCAALTA-----SKPYY-----------EVSFKKASAIVVGTEDQGLTEE 242

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  S   I  P+  +  S+N+S A  ++++E     +
Sbjct: 243 WLTHSTQNIIIPMEGIIDSMNVSVAAAVLIFEAKRQRV 280


>gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 243

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       N+G   R+     +  + +   R    +  A+  +  A   +  +RV +  
Sbjct: 99  ILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN-- 156

Query: 78  KEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      A T R     N   V    EA   L +    G  + ++ G E  G+   
Sbjct: 157 ----------LARTMRMLQEENIWIVGTAGEADHTLYQSKMPG-RMALVMGAEGEGIRRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + +IS P+     SLN+S A  + ++E +   
Sbjct: 206 TREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 242


>gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 266

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +G  +I  + Q   N+G + R    F    +  +N      + K   +S  +   I    
Sbjct: 104 EGVYVIADNVQDPGNLGTIIRTADAFGADAVFTINNSVDIYNPKVLRASMGSIFHIP--- 160

Query: 73  VFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +   E +  L      ++AT  +       V                 +    I G E
Sbjct: 161 VIATANEVLYKLKGKGVKVFATHLKGEKFVHEV--------------EIDKGTAFILGNE 206

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             G+++  +   +  I  P+     SLN+S A  + ++E     ++ +++N
Sbjct: 207 ARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQRLIKNKQN 255


>gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R]
 gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
 gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
 gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 276

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 27/173 (15%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A  L+N+    V++L      ENIG + R      +  +   N        +    S   
Sbjct: 115 AQVLENART--VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGH 172

Query: 65  DCVIDSVRVFSN----------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
              +    +             LKEA    H +              L P   A  L + 
Sbjct: 173 VLRLPFAHLEGTYTTWQRSLEQLKEA--GFHLV-------------SLTPDPEAEHLEDA 217

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +     V ++ G E  GLT   +  ++     P+ P   SLN++ +  +  +E
Sbjct: 218 LAGKDKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYE 270


>gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 249

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 23/179 (12%)

Query: 7   QLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62
           +L +  +G   +++L       N+G   R           ++ P+D      A  +  ++
Sbjct: 87  ELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAH--AVIAPKDRSVGINATVAKVAS 144

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  + V +    L+E      ++  T               + A     +     
Sbjct: 145 GAAETVPYITVTNLARTLRELQQRGVWVIGTA--------------DEAEQNLYQADFKG 190

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            + ++ G E  G+        + ++S P+     SLN+S A  + ++E +        +
Sbjct: 191 PIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRAAVPAQ 249


>gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
 gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
          Length = 249

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 20/167 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68
            A   ++IL +     N+G   R+     + Q  +V PR      +  A  ++  A   +
Sbjct: 97  PASPLLLILENVTDPHNLGACLRSADAAGV-QAVIV-PRRNAAGLTPVACRTAVGAAESL 154

Query: 69  DSVRV--FSNLKEAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
               +   ++L + + D   ++  T    R+       P E             ++ I+ 
Sbjct: 155 VYYEIGNLASLLDQLRDRGVWVVGTALEERSESLFTFQPPE-------------SLAIVM 201

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL        + ++  P+     SLN+S A  +M+++     
Sbjct: 202 GAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRAQR 248


>gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4]
 gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4]
          Length = 260

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 18/170 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           A  L        ++L   Q   N+G + R+     +       P   +  S K   S   
Sbjct: 104 AQPLPARVTDTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMG 162

Query: 64  ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A  ++    +  +++ +A+A+                 V                   V 
Sbjct: 163 AHFLLS---IHEDVEPDALAE------------RLDVPVALTDSHGAQAVYDCDLSGPVA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 208 WVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|56421995|ref|YP_149313.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|56381837|dbj|BAD77745.1| rRNA methylase [Geobacillus kaustophilus HTA426]
          Length = 247

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 28/199 (14%)

Query: 7   QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANA 64
           ++ N     + +L++      N   V R    F +  + +V  +  + P+      +   
Sbjct: 40  EVLNERTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYA--- 96

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                ++    ++K AIADL      +YA  +        V             I   Q 
Sbjct: 97  -DQWLTLHHKPDIKTAIADLKSQGYQVYA--SYLGEETIPVSD-----------IDLSQP 142

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             ++FG E  G++ E + L++     P+     S NIS A  L +++  E +   + ++ 
Sbjct: 143 TALLFGNEHSGVSEEALRLADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQAGRH- 201

Query: 181 KEQNTPATKGELLSFLDYL 199
                     E  +  +  
Sbjct: 202 ----YYLLPEEKKALYEQW 216


>gi|322688977|ref|YP_004208711.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460313|dbj|BAJ70933.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 292

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+    ++  + LV P  G P   +A   S      I   R+            
Sbjct: 137 NVGALMRSAAALDV-DVVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              F  + E  +      A    +R+     L  +  A    E       + +IFG E  
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLALIFGTEGD 253

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL++  IA ++  +  P++    SLN++ +  +  +
Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289


>gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 264

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 24/148 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R      +  + L+       S +   ++  +   +  V+     +E IAD 
Sbjct: 130 PGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIFALPIVKC--TREEFIADR 187

Query: 85  HF----IYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                 +  T  TA++ +       P                  ++ G E+ GLT E   
Sbjct: 188 GRWTGSVVGTLLTAKHDHRSAPYKRP----------------TLLLMGTEQSGLTPEIAD 231

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +  +  P+     SLN+S A  +M++
Sbjct: 232 TCDLHVKIPMRGRADSLNLSVATGIMIY 259


>gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
 gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
          Length = 260

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 23/155 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSVRVFSN 76
           Q   N+G + R      + ++ L        +EK   S+  +   I      +++ +   
Sbjct: 120 QDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSIFYIPIYYDDENLSLVKE 179

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LK      + +  +   ++N F++ L                  V +  G E  G++ E 
Sbjct: 180 LKG--KGFNLVVTSLDTDKNFFQADLR---------------GRVLLTVGNEGNGVSREV 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +++  +  P+     SLN++ A  ++++E +  
Sbjct: 223 LEMADTKVKIPMPGNAESLNVAVASSVIMYEKVRQ 257


>gi|255324981|ref|ZP_05366088.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297970|gb|EET77280.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 268

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 17/152 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK------E 79
           ENIG + R      +  + L +        ++   S      +    +           +
Sbjct: 122 ENIGAIFRHAAGMGVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQ 181

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A+AD  F               L P   A+ L E +     V ++ G E  GLT   +  
Sbjct: 182 ALADASFTL-----------ISLTPNPQAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKA 230

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++     P+ P   SLN++ A  +  +E   +
Sbjct: 231 TDIRARIPMAPGTDSLNVATAAAISFYERQRS 262


>gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 248

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 15/160 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           ++L       NIG + R         + LV  +    +     +SA A   +  +R+   
Sbjct: 102 VVLQGLDDPHNIGAIIRTAEAVAADAVVLVEGKGSPVNAVVHKASAGA---LSHMRICKV 158

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L  A+  LH               VLA    A +        ++  I+ G E  G+  
Sbjct: 159 KSLVRALELLHQC----------NVQVLAADMEAELNYTDADMKKSTAIVLGMEGSGIAP 208

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E +   + ++  P+     SLN+S    ++++E M   + 
Sbjct: 209 EALQFCDHVVRIPMAGCVESLNVSVTAGVLLYEAMRQRLA 248


>gi|194336255|ref|YP_002018049.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308732|gb|ACF43432.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 180

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 28/163 (17%)

Query: 21  DPQLG-----ENIGMVARAMWNFN----------LTQLRLVNPRDGWPSEKARSSSANAD 65
            P+        NI    R+MWN            + ++ L       P ++   ++  A 
Sbjct: 23  SPKHPLVLMLHNI----RSMWNVGSMFRSADAARIEKIILSGYTATPPRKEIAKTALGAQ 78

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +      ++  EA+         + +        L   E +            + ++ 
Sbjct: 79  DTVVW-EYHADPLEAV--------CSMKREGVRICGLEITEGSRPYTAVNAGDFPICLVV 129

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           G E  GL NE +   + ++  P      SLN++ A  + ++E 
Sbjct: 130 GNEVDGLENEILDSCDDVLEIPQYGTKHSLNVAVAAGIALFEL 172


>gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
 gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
          Length = 279

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%)

Query: 14  GPVIILVD-PQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANADCVI 68
            P++ILV+  Q   N+G + R          +T + + +      + K   S+  +   +
Sbjct: 129 NPLLILVENLQDPGNLGTILR----MGEGAGVTGVIMSSNTVDIYNPKTIRSTMGSIFRV 184

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             V    +  +A++          +N                L E    G     + G E
Sbjct: 185 PFV-YVQDFSDAVSQC--------KNAGIKVYAAHLDGKNTYLGEDYREG--TAFLIGNE 233

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GLT +    ++ +I  P+     SLN + A  ++ +E +   
Sbjct: 234 GNGLTEDITKQADTLIRIPMQGEVESLNAAIACTILTYEAVRQR 277


>gi|332292916|ref|YP_004431525.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171002|gb|AEE20257.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 261

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 21/155 (13%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P+   NIG + R      +  + + NP+    +     SS           VF+      
Sbjct: 123 PEKPGNIGALLRTADAAGVDAVIIANPKTDLYNPNIIRSSVG--------CVFTT----- 169

Query: 82  ADLHFIYATTAR----NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                   TTA      +    +V +      V            I+ G E  GL+ +E 
Sbjct: 170 ---QIATGTTAEVISFLQEKGIAVYSAILQEAVDYAAQDYTTPTAIVVGTEATGLS-QEW 225

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 I  P+     S+N+S A  ++V+E     
Sbjct: 226 RTVGTNIKIPMRGKIDSMNVSVAAGILVFEARRQR 260


>gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           equinus ATCC 9812]
 gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           equinus ATCC 9812]
          Length = 276

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+I IL       N G + R     N+T + +   R    +     +S  A   +   
Sbjct: 126 ENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVSKTSTGAVEHVPIA 185

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV +    L +      +++ T               +     + +  +   + +I G E
Sbjct: 186 RVTNLSQTLDKLKEQGFWVFGT---------------DMNGTSSHKWNTSGKLALIIGNE 230

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++       + +I+ P+N    SLN S A  ++++E   + +
Sbjct: 231 GKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRHKV 275


>gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 252

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L + +   N+G + R         + +   R    +     +SA A   +   RV +   
Sbjct: 104 LDELEDPHNLGSILRTADAVGAHGIIVPKRRSVGLTYTVAKASAGAIEHVPVTRVTNLAR 163

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + E   +  +   T A+   +++ V                   V ++ G E  G++  
Sbjct: 164 TMDELKKEGLWFVGTDAKGEQDYREVDL--------------DMPVVLVIGSEGRGISRL 209

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                + ++  P+     SLN S A  L+++E          K
Sbjct: 210 VKEKCDFLVQIPLAGKVTSLNASVAASLLMYEVYRRRFPQGLK 252


>gi|269103907|ref|ZP_06156604.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163805|gb|EEZ42301.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 236

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 18/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS---SSANADCVIDSVRVFSNLKEAI 81
             N+  + R      + ++  V     W +E+ R    +SA +   ++ +   +N+ +A+
Sbjct: 30  PNNVSAIIRTADAVGVHKVHAV-----WQAEQLRLHSHTSAGSRNWVE-LETHANITDAV 83

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                      + +          E A+   E I   +   II G E+ G+T E +AL++
Sbjct: 84  H--------AMKAQGMQVLATNLSERAVDFRE-IDYTKPTAIILGGEKHGITPEALALAD 134

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             I  P+  +  SLN+S A  L+++E       +      E   P
Sbjct: 135 QDIIIPMVGMVQSLNVSVASALILYEAQRQRQNAGMYQRTETLLP 179


>gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis
           DSM 16069]
          Length = 246

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 29/180 (16%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARS 59
           + P+L +       IL+        N+G   R+     +    ++ P+D   S  +  R 
Sbjct: 85  HIPELLSQIDEAPFILILDGVTDPHNLGACLRSADAAGVH--MVIAPKDNAASITDVVRK 142

Query: 60  SSANADC------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
            +  A        V + VR    L+EA     +I  T                 A     
Sbjct: 143 VACGAAETVPFIPVTNLVRAMKQLQEA---GVWIAGTAG--------------EAEQDIY 185

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +      + I+ G E  G+        + +I  P+     SLN+S A  + ++E +   I
Sbjct: 186 QANLKGPLAIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTLFEAVRQRI 245


>gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2]
 gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter
           eiseniae EF01-2]
          Length = 248

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 23/174 (13%)

Query: 6   PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--S 61
            +LQ +  GP ++LV        N+G   R           ++ P+D      A  +  +
Sbjct: 90  EKLQAAGSGPPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVA 147

Query: 62  ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           + A   +    V +    L E      +   T               + A     ++   
Sbjct: 148 SGAAETMPYFMVTNLARTLDELKERSIWCIGTC--------------DDAPGTLYQLDLK 193

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             V ++ G E  G+        + +   P+     SLN+S A  + ++E +   
Sbjct: 194 GPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGICLYEALRQR 247


>gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
           PC909]
 gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
 gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
           PC909]
 gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
          Length = 276

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL   +   N+G + R      +  + +   R    +      S  A   I    V +
Sbjct: 127 IIILDGLEDPHNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKLSTGAIEHIPVACV-A 185

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL  AI  L     +I  T A    +++++               +   +G++ G E  G
Sbjct: 186 NLTVAINQLKEAGLWIAGTDASEAQDYRTL--------------DATLPLGLVIGSEGKG 231

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           ++       +  +  P+     SLN S A  L+++E  
Sbjct: 232 MSRLVREACDFKVYLPMRGHVTSLNASVAAALLMYEIY 269


>gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
 gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
          Length = 233

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           +IL + +   N+G + R      +  + +   R    ++    +S  A   +   RV   
Sbjct: 85  VILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEYVPVARVVNI 144

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + + +      +I+ T  +  +                    +   V I+ G E  G++
Sbjct: 145 NNTIDKLKKANFWIFGTDMKGADYNDW---------------NADGPVAIVIGNEGKGIS 189

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            +     + +++ P+     SLN S A  L++++
Sbjct: 190 AQTKKKVDQMLTIPMVGHVQSLNASVAAALLIYQ 223


>gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
 gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
          Length = 235

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 13/169 (7%)

Query: 3   PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P  P+  ++     ++LV        N+G + R+   F    L          S     S
Sbjct: 72  PLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKS 131

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A   ID + V  NL +A+  LH            F+++    +    L E  F+G  
Sbjct: 132 ASGALEHIDQIEV-KNLADALGQLH---------EAGFQTIGLDSDGPAEL-ETSFAGDR 180

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           + ++ G E  GL  +       +    +     SLN+S A  + ++   
Sbjct: 181 IALVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 229


>gi|332529994|ref|ZP_08405944.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis
           ATCC 19624]
 gi|332040467|gb|EGI76843.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis
           ATCC 19624]
          Length = 154

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 17/165 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
            I+LV P++  N G V R   N     L L+ P      ++    +       +   V  
Sbjct: 3   RIVLVHPEIPPNTGNVIRLAANTGCA-LHLIEPLGFAMEDRLLKRA--GLDYHEYAEVRR 59

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++ +  +++         R        L  +   +V +     G    ++FG E  GL 
Sbjct: 60  HADWEAFLSE--------ERPNPERMFALTTRGTGVVHDSAFLPGDW--LVFGAETSGLP 109

Query: 134 NEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               A       +  P+     SLN+S AV + V+E    +  +S
Sbjct: 110 PGVRAQFAPERQLKLPMRAGQRSLNLSNAVAVTVFEAWRQNGFAS 154


>gi|254446967|ref|ZP_05060434.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263106|gb|EDY87384.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 225

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 19/210 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L+       +++ +     N   + R+     + +   V P  G  +    +  A+   
Sbjct: 12  TLKRRQTSLTVVMENVHKPHNFSAIVRSCEAVGVHRAHAVYPEGGIGNNAGTTVGAHKWV 71

Query: 67  VIDSVRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +D+ R      + +       + A                E A+   E +   Q   ++
Sbjct: 72  QVDTHRNIQTPFQQLKAQGFQLLTA-------------HLDETAVDFRE-VDYTQPTAVV 117

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            G E  G++ E   L++  I  P+  L  SLN+S A  L+++E      ++      E +
Sbjct: 118 MGSELHGISEEAAQLADHSIVIPMLGLTESLNVSVATALILFEAQRQRQLAGMYEQPELD 177

Query: 185 TPATKGEL--LSFLDYLEISLEERGYFRPV 212
             AT+  L        L    + RG   P 
Sbjct: 178 E-ATRKTLMFEWAYPDLARRYQSRGEPYPE 206


>gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 263

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 19/177 (10%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARS 59
           TP A     +     ++L   Q   N+G + R+     + Q    +P     W S K   
Sbjct: 104 TPVA-SAPKALTESAVLLDGLQDPGNLGSILRSAAAAGVRQ-VFCSPGTVAAW-SPKVLR 160

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +   A  V+D           + D   + A  A +R     +LA    A           
Sbjct: 161 AGMGAHFVLD----------IVEDADLV-ALCAASR---IPLLATSSHAAQTIYDCDLSG 206

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            V  + G E  G++      +   +  P      SLN++ A  + ++E +       
Sbjct: 207 PVAWLLGHEGQGVSAALQEAATQEVVIPHLGQMESLNVAAAAAVCLFEQLRQRTAGR 263


>gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 263

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGM---VARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           +  +  +G +++L +     N+G     ARAM    +    L++      + K   ++  
Sbjct: 104 ETVHPERGLILVLDEIHDPGNVGTMIRTARAMNAQGV---ILLSGSADLYNPKVVRAAMG 160

Query: 64  ADCVIDSVRVFSNL-KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
               +  + VF+ + ++A+         T   +  +  V    + A  L +  +  Q   
Sbjct: 161 N---LFHIPVFTGITEDAL--------MTFAQKAGWTLVATALDGAADLRDFTYP-QKTL 208

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +I G E  G+++  +  S A +  P+     SLN+  A  ++++E M   
Sbjct: 209 LIMGSEAEGVSHSLLEKSAARVKIPMLGEAESLNVGVAAGILLYEAMVQQ 258


>gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14]
 gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14]
 gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 292

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRV 73
           V++L       N+G + R+   F++  + L  P       +E     SA A   +  VRV
Sbjct: 133 VLVLDAITDPHNVGAIVRSADQFSVDAVLL--PHHHGAGGTETITRVSAGAVAWVPLVRV 190

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +           +  T    + +   +     A   +  R F      ++ G E  G++
Sbjct: 191 RN-----------LVRTAGILKRSGFWLYGADVAGEAIGARTFP-PKTALVLGNEGHGVS 238

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                  +A+IS P      SLN+S A  ++++E   +    
Sbjct: 239 PLLRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRRSQQSP 280


>gi|195628230|gb|ACG35945.1| hypothetical protein [Zea mays]
          Length = 163

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 33/151 (21%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82
            N+G +AR+   F + ++ +V  RD      +   S  A   +   R F +L  A A   
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFVSLALARAYLK 71

Query: 83  ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                                 +   + A  +    F  ++   +FG E  GL+ +E  +
Sbjct: 72  DERGCDICG-------------VEITDDAQPVTAHPFR-RSTAFLFGNEGTGLSQKECEI 117

Query: 140 SNAIISFPVNPLFP----SLNISQAVLLMVW 166
            +  +  P    +     SLN++ A  +++ 
Sbjct: 118 CDFFVYIP---QYGGGTASLNVTVAASIVLH 145


>gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           subsp. hominis C80]
          Length = 249

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  IIILDGLEDPHNLGSIIRTADASGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156

Query: 76  N---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   + +++    A N  +++++               +   + I+ G E  G+
Sbjct: 157 LSKIIDELKDNGYWVAGAEADNATDYRNM--------------AADMPLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +       +  I  P+     SLN S A  LM++E   
Sbjct: 203 SRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYR 240


>gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX8]
 gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX8]
          Length = 267

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 28/193 (14%)

Query: 4   YAPQLQNSAKGPV-----IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEK 56
               L N+  GP      + L   +   N+G + R+     +    +V P  R    S  
Sbjct: 83  ALEDLLNAPPGPTGFRFFLALDGVEDPHNLGALLRSADGSGIDG-VIV-PERRSAPLSAT 140

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLN 112
              SSA A   +   +V  N+  A+  +     +I     R          P        
Sbjct: 141 VAKSSAGASEHVRIAQVV-NITRALETMKKHNVWIVGLDERG--------TPDYTDFDFR 191

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 Q+  ++ G E  GL        + ++  P+     SLN+S A  ++++E M   
Sbjct: 192 ------QDCCLVLGSEGSGLHELVKRTCDHLLRIPMAGSVSSLNVSVAGAVVMYEAMRQR 245

Query: 173 IVSSEKNVKEQNT 185
              + +      T
Sbjct: 246 RSGAVQAPAASKT 258


>gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni]
 gi|238658466|emb|CAZ29521.1| rRNA methylase, putative [Schistosoma mansoni]
          Length = 338

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 31/170 (18%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-DCVIDSVRVFSNLKEAIADLH 85
           N G + R+   F ++ + L       PS      S  A + ++     F  L + + D+ 
Sbjct: 156 NFGNILRSAAFFGISAVILSTSPCVSPSPLISKISVGAMESIL-----FYRLTDTVMDMK 210

Query: 86  -------FIYATTARNR------NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                   I  T   ++      +    +L P E     +      + + +  G E  GL
Sbjct: 211 SLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDNTGVYPRPLILALGSESRGL 270

Query: 133 TNEEIALSNAIISFPVNPLF------------PSLNISQAVLLMVWECME 170
           +   +   + ++  P                  SLN+S A  +++++   
Sbjct: 271 SENVLNSCDLLLRIPGYGDSTKLNQCISQTIPSSLNVSVAAGILLYQLTM 320


>gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
           mediterranea MMB-1]
 gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
           mediterranea MMB-1]
          Length = 253

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 27/172 (15%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADC---- 66
              +IIL       N+G   R+          +V P+D     +      +  A      
Sbjct: 101 TPLIIILDGITDPHNLGACLRSADAAGAH--AVVMPKDKSAPLNATVSKVACGAAESMPV 158

Query: 67  --VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V +  R    L++      +I+ T                 A  +           I+
Sbjct: 159 FAVTNLARTMKKLQD---QGVWIFGTAG--------------EATDMLYDHDLTIPTAIV 201

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G E  G+        + ++  P+  +  SLN+S A  + ++E +      +
Sbjct: 202 MGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYEAVRQRTNKA 253


>gi|195644564|gb|ACG41750.1| hypothetical protein [Zea mays]
          Length = 163

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 33/151 (21%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82
            N+G +AR+   F + ++ +V  RD      +   S  A   +   R F +L  A A   
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFVSLALARAYLK 71

Query: 83  ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                                 +   + A  +    F  ++   +FG E  GL+ +E  +
Sbjct: 72  DERGCDICG-------------VEITDDAQPVTAHPFR-RSTAFLFGNEGTGLSQKECEI 117

Query: 140 SNAIISFPVNPLFP----SLNISQAVLLMVW 166
            +  +  P    +     SLN++ A  +++ 
Sbjct: 118 CDFFVYIP---QYGGGTASLNVTVAASIVLH 145


>gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
 gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
          Length = 291

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G   R+    N+    LV+P    P   +A   S      +   R+ ++      D  
Sbjct: 137 NVGAAFRSAAALNV-DAVLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGADRASWPQD-- 193

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
                T R      + LA  + +I L++ I +    + + FG E  GL++  I   + I+
Sbjct: 194 --GMATLRAAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRVIEACDMIV 251

Query: 145 SFPVNPLFPSLNISQAVLLMVWEC 168
             P+     SLN++ A  ++ W+ 
Sbjct: 252 RIPMAGGVDSLNVAAASAVVFWQL 275


>gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           anginosus F0211]
 gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           anginosus F0211]
          Length = 242

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 20/165 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+T + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 153

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +NL +A+  L     +I+ T                      +   +G  + +I G E
Sbjct: 154 V-TNLSQALDKLKHAGFWIFGT--------------DMNGTPSTKWNTAG-KLALIIGNE 197

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 198 GKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3]
 gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3]
          Length = 247

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 23/165 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71
           +L       N+G   R      +  + +   R    +      +  A  V+      +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R    L+E    + +   T                 A     +      + I+ G E  G
Sbjct: 160 RTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        + +I  P+     SLN+S A  + ++E +   I + 
Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247


>gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. RS9917]
 gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. RS9917]
          Length = 504

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 23/167 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SNLK 78
             N+G + R+        + L   R    +      +A A   +   RV        +LK
Sbjct: 285 PHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLESLK 344

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A                 ++ V   +E  + L E    G  V ++ G E  GL+     
Sbjct: 345 DA----------------GYRVVGLAEEGDLTLAEADLEGPLV-VVTGSEGDGLSLLTRR 387

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             + +I  P+  + PSLN S A  L ++E      +   +       
Sbjct: 388 HCDQLIRIPLRGITPSLNASVATALCLYEVARRGWMKDLRGQAPSPA 434


>gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
 gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
          Length = 239

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 30/167 (17%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L   +   N+G + R+   F +T + +   R    +E    +S  A   +    V ++  
Sbjct: 94  LDRIEDPHNLGAIFRSADAFKVTGIVIPRDRSVTVTETVAKTSTGALFYVPFA-VVNSFV 152

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---------GIIFGRER 129
            A+ +                     KE    L      G+ +         G++ G E 
Sbjct: 153 TALREF--------------------KEMGGWLVGLEAGGKPLSKFEFPFPLGLVAGSEG 192

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GL+   +   + ++   +     SLN+S AV + +++      ++S
Sbjct: 193 RGLSRSTVKQLDELVEIEMGGHVNSLNVSNAVAIGLYKVFCQRYINS 239


>gi|225011172|ref|ZP_03701633.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
 gi|225004682|gb|EEG42643.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
          Length = 273

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 23/175 (13%)

Query: 7   QLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L+ +AK P + LV   P+   NIG + R      +  + + NP+    +     SS   
Sbjct: 116 ALKVTAKNP-LYLVAEAPEKPGNIGALLRTADAAGIDAVIIANPKTDLYNPNVIRSSVGG 174

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQN 120
                   VF+        +     T+    +  ++  A   AA +   +  +       
Sbjct: 175 --------VFT--------VAVAMGTSKEVLDFLQAAKANVYAAALQASKPHTEVSYTGT 218

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             I+ G E  GL    +  SN  I  P+     S+N+S A  ++++E +    +S
Sbjct: 219 TAIVVGTEATGLEAIWLEQSNQNIRIPMRGKIDSMNVSVAAGILIFEAIRQRDIS 273


>gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 275

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+    ++    LV PR   P   +A   S      +  VR    L+   ADL 
Sbjct: 139 NVGAIFRSAAALDV-DAVLVTPRCADPLYRRAVRVSMGTVFQVPWVR----LEHWTADLQ 193

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
            +     ++     + LA  + A+ ++       + + +I G E  GL    +  ++  +
Sbjct: 194 RV-----KDAGFLTAALALSDDAVTVDALAAEAPEKLALILGTEGQGLGAATLHHADRHV 248

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
             P++    SLN++ A  +  WE  
Sbjct: 249 IIPMSHGVDSLNVAAASAVAFWETR 273


>gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
 gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
          Length = 249

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62
            L   +K PV+IL+        N+G   R+     +    +V P+D   +        + 
Sbjct: 88  TLLERSKKPVLILILDGITDPHNLGACLRSADATGVD--FVVIPKDKSANITPVVSKVAC 145

Query: 63  NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   I  VRV +NL  A+        +I+                   A  L   +   
Sbjct: 146 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAEHLLYAMDCS 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            N+ ++ G E  GL        + + S P+     SLN+S A  + ++E +       E
Sbjct: 191 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 249


>gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 299

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 66/190 (34%), Gaps = 21/190 (11%)

Query: 3   PYAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEK 56
           P A +L  +A+G      V++L D     N+G V R+     +    LV P    P   +
Sbjct: 117 PRADELLATARGGAPARRVVVLEDLVDHTNVGAVFRSAAALGV-DAVLVTPSCADPLYRR 175

Query: 57  ARSSSANADCVIDSVRVFSNLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
           +   S      +   R    L+      A+    F  A  A +         P +    L
Sbjct: 176 SVRVSMGTVFQVPWTR----LEAWPDMGALHGAGFTVAALALSDEA-----VPLDDFAAL 226

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 G  + ++ G E  GL    IA S+  +  P+     SLN++ A  ++ W     
Sbjct: 227 PVLAAPGAKLAMVMGTEGDGLGRRTIAASDYTVRIPMEHGVDSLNVAAASAVVFWATRGV 286

Query: 172 SIVSSEKNVK 181
              +S     
Sbjct: 287 GARTSGPAAG 296


>gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           UCN34]
 gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus
           gallolyticus UCN34]
 gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 249

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+I IL       N G + R     N+T + +   R    +     +S  A   +   
Sbjct: 99  ENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIA 158

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV +    L +      +++ T                     ++   SG  + +I G E
Sbjct: 159 RVTNLSQTLDKLKEQGFWVFGT--------------DMNGTPSHKWNTSG-KLALIIGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++       + +I+ P+N    SLN S A  ++++E   + I
Sbjct: 204 GKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRHKI 248


>gi|33862541|ref|NP_894101.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640654|emb|CAE20443.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
          Length = 245

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 21/174 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---E 79
           +   N+  + R+     + +   VN     P+    S++  +   I  ++  S+++   +
Sbjct: 46  EKPHNLSAILRSCDAVGVLEAHAVNYSGRLPTFN--STAQGSQKWIP-LKEHSSIEVAVK 102

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           AI D  F +Y T     +   +    ++            +    + G E+WGL+     
Sbjct: 103 AIKDSGFRLYGT-----HLGGNARDYRDCDFC--------EPTAFVLGAEKWGLSKLATP 149

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGE 191
           L +  I  P++ +  SLN+S A   +++E   +  +        E   PA   +
Sbjct: 150 LMDEGIFIPMSGMVQSLNVSVAAATLLFEALRQRRLAGIAPQAGEGLEPALYQQ 203


>gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 325

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 39/91 (42%)

Query: 94  NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153
            R      L P + A++L E +   Q   +I G E  GLT   +  S+     P+ P   
Sbjct: 225 QRGYRCVALTPSDDAVMLPEALDGAQRAALIVGAEGPGLTEHAMRASDVRARIPMAPGTD 284

Query: 154 SLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           SLN++ A  +  +E    SIV   + ++   
Sbjct: 285 SLNVATAAAMGFYERARTSIVGCGRPLRPAR 315


>gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase
           [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FS 75
           L + +   N+G + R         + +   R    +     +SA A   +   RV     
Sbjct: 101 LDELEDPHNLGSIMRTADAVGAHGVIIPKRRSVSLTATVAKASAGAINYVPVARVTNLVR 160

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            ++E      +I  T A  + +F+              +      + I+ G E  G++  
Sbjct: 161 TMEELKERGVWIAGTDASAKQDFR--------------QGDYTMPLAIVIGSEGKGMSRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + + S P+     SLN S A  L+++E   + 
Sbjct: 207 VRENCDFLYSLPMAGNVTSLNASVAAALLMYEVYRSR 243


>gi|317493379|ref|ZP_07951801.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918772|gb|EFV40109.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 371

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 53/151 (35%), Gaps = 19/151 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R   +F +  L +V       S  A  ++   A+ +            A+ +
Sbjct: 234 PHNLGGIMRTCAHFGVKGL-MVQDASMLESGAAVRTAEGGAEHI--QAIDADGFDGALDE 290

Query: 84  LH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +   TT+ ++                  +    + + ++ G+ER GL+   +   
Sbjct: 291 FRRAGYTIVTTSSHKGTTP------------LTKATLPKKMVLVLGQERDGLSETVMQQG 338

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +S        SLN+S A  +++ E    
Sbjct: 339 DLSLSIGGTGQVESLNVSVATGILLAEWWRQ 369


>gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum
           PSI07]
 gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum PSI07]
          Length = 259

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +   +IL   Q   N+G + R      +  + +        S K   ++  A   
Sbjct: 107 LPHRIEHDCVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFH 166

Query: 68  IDSVRVFSNLKEAIADLHF-IYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           ++ V      +   A LH  + AT+  AR       +  P                VG +
Sbjct: 167 LNIVEHC-TFESVHARLHVPLLATSSHARQAVFDVPLHKP----------------VGWV 209

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G++ + +++    IS P      SLN++ A  + ++E +   
Sbjct: 210 LGNEGAGVSEQWLSV-TTPISIPQPGGMESLNVAAAAAICLFEAVRQR 256


>gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 287

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R+     + L P+  A+ L E       V ++ G E  GLT + IA ++  +  P+    
Sbjct: 209 RDGGFRVAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGV 268

Query: 153 PSLNISQAVLLMVW 166
            SLN++ A  +   
Sbjct: 269 DSLNVATAGAIAFH 282


>gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 283

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 7/172 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L   +   N G V R         + L +      + KA  +S  + 
Sbjct: 111 EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSL 170

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        ++ A+  L       A  R          +    L +R   G     +F
Sbjct: 171 FHLPVAVGV-TVERAVGGLRD-----AGVRVLAADGAGADDLDDEL-DRGTMGTPTAWVF 223

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E WGL  E  AL++A++  P++    SLN++ A  + ++        +  
Sbjct: 224 GNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYASARAQRAAGG 275


>gi|296328847|ref|ZP_06871358.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153968|gb|EFG94775.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 256

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71
           +IL D     N+G + R     N   + L        +EK   ++  +        ++  
Sbjct: 109 VILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEKS 168

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + + LKE                NN+  +    +   +L  +I   +   +IFG E  G
Sbjct: 169 EIINFLKE----------------NNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNG 212

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++++ I +++     P+     SLN++ A  +++++  E
Sbjct: 213 ISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 251


>gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           ochracea DSM 7271]
 gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           ochracea DSM 7271]
          Length = 244

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 67/173 (38%), Gaps = 25/173 (14%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANAD 65
            ++ A    ++L       N G + R      ++ + +  P+ G  S  A    +SA A 
Sbjct: 90  TESGATPLFLVLDHLSDVRNFGAIIRTAECTGVSGIII--PKRGSVSITADTVKTSAGAV 147

Query: 66  CVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +   +V  NL +A+     + +  + AT          +L  ++  +           
Sbjct: 148 FRVPICKV-ENLVDAVYYLQGSGIRVVAAT-----EKTSQLLYTEDFTV----------P 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             I+ G E  G++   + + ++    P+     SLN+S A  + ++E ++  +
Sbjct: 192 TAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQRL 244


>gi|19704210|ref|NP_603772.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714434|gb|AAL95071.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 261

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 21/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71
           +IL D     N+G + R     N   + L        +EK   ++  +        ++  
Sbjct: 114 VILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEKS 173

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + + LKE                NN+  +    +   +L  +I   +   +IFG E  G
Sbjct: 174 EIINFLKE----------------NNYSIISTYLDKTAILYNKIELKEKNAVIFGNEGNG 217

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++++ I +++     P+     SLN++ A  +++++  E
Sbjct: 218 ISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 256


>gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 265

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 17/149 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVN---PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
            +N+G + R+   F    L L +   P+      KA + +     V   V +   L E I
Sbjct: 128 PQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLSRALDELI 187

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                          +   VL               G  V ++ G E  GL        +
Sbjct: 188 DAGWRTVGLAGGGERSLGEVLD--------------GSPVVLVLGSEGEGLRRLVAERCD 233

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            +   P+   F SLN+S A  + ++E   
Sbjct: 234 ELARIPMPGGFESLNVSNAAAIALYEASR 262


>gi|169334368|ref|ZP_02861561.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259085|gb|EDS73051.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
           17244]
          Length = 155

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 38/169 (22%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+L +P++ +N G + R     + T+L L+ P      +K    +       D     V+
Sbjct: 4   IVLFNPEIPQNTGNIVRTCAVTD-TKLHLIKPLGFSIKDKYLKRA--GLDYWDEATISVY 60

Query: 75  SNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            N ++ +   D+  +Y  T +   N+                    +N   +FG E  GL
Sbjct: 61  ENFEDFLDKNDVKNLYLLTTKGDKNYTDFKF--------------EENDYFMFGAETKGL 106

Query: 133 TNEEIALSNAI--------ISFPVNPL--FPSLNISQAVLLMVWECMEN 171
                   + I        +  P+ P      LN+S +V ++++E +  
Sbjct: 107 P-------DYIHQKYPSTRLRIPMIPKENARCLNLSNSVAVLLYEALRQ 148


>gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
          Length = 296

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 96  NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
           +    +  P ++ + L  R         +FG E WG+  E++ L ++  + P+     SL
Sbjct: 224 DQSHDIHHPWDSGLDLTAR------TTWVFGNEAWGMRTEDLELCDSSAAVPIYGKAESL 277

Query: 156 NISQAVLLMVWECMENS 172
           N++ A  + ++E   N 
Sbjct: 278 NLATAASVCIYESARNQ 294


>gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 248

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 22/176 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N ++ P++ IL       N+G   R           ++ P+D     +      +  A
Sbjct: 89  LENLSEPPLLLILDGVTDPHNLGACLRVADAMGAH--AVIAPKDRSATLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             V+  + V +    L++      +I  TT                A        +   +
Sbjct: 147 AEVVPYITVTNLARTLRDLKDAGVWIAGTT--------------MEADTDLYHFDASGPL 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             + G E  G+        + ++S P+     SLN+S +  +++ E     ++ + 
Sbjct: 193 AWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQRVLKAG 248


>gi|329851903|ref|ZP_08266584.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328839752|gb|EGF89325.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 257

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F +  + L          KA   S      +  +RV  NL EA+     
Sbjct: 129 NMGGLMRNAAAFGVDAVLLDAACCDPLYRKAIRVSVGGVFQVPHIRV-PNLVEAL----- 182

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                          L+P  +  V+ + +   +    +FG E  GL  E +A   + +  
Sbjct: 183 ------TAHGVAPYALSP--SGAVVLDDVAPAERSAFLFGAEGPGLAPEVMAACTS-VRI 233

Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
            ++  F SLN++    ++++    
Sbjct: 234 DMHGGFDSLNVATTSGIVLYHMCR 257


>gi|218659677|ref|ZP_03515607.1| rRNA methylase protein [Rhizobium etli IE4771]
          Length = 343

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 66/174 (37%), Gaps = 21/174 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +   R  + 
Sbjct: 54  VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 111

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E +A      +  + AT      +++++   K             + + ++ G E+ G
Sbjct: 112 PEEFLAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPIVLLMGNEQSG 157

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           L  +    ++A+   P      SLN++ A  +M++E    S ++    + EQ  
Sbjct: 158 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRPSPLTCRGQMTEQTY 211


>gi|315638089|ref|ZP_07893274.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481937|gb|EFU72556.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
          Length = 229

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +        E    SS+ A   +       
Sbjct: 85  IVMLCGISDVGNIGAIIRTAYALGVDGLLFIG--KNLAQESIVRSSSGAALDLPICLSND 142

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+ +L          +     +         ++   F      +I G E +GL+++
Sbjct: 143 AL-SALNEL----------KQMEFKLYGADGKGREVHHLTFPKGKKVLIMGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            I   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IIQKCDECVGIAMQNDFDSLNVSAAFAILC 221


>gi|332882239|ref|ZP_08449869.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679862|gb|EGJ52829.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 242

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 27/164 (16%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71
           +G ++ L + Q   N+G + R    F +  L L N +     + K   ++  +   +  V
Sbjct: 96  EGVIVALDNVQDPGNLGTIIRLCDWFGVETL-LCNTQTVDCYNPKVVQATMGS---LTRV 151

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V         DL     TTA        V         L    F  ++  +I G E  G
Sbjct: 152 AVH------YLDLAAFLTTTA------LPVYTMDLEGENLYTATFP-KDCILILGNEANG 198

Query: 132 LTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECM 169
           +++E  ALSN +I+ P    F       SLN++ A  +++ E M
Sbjct: 199 ISSEVRALSNEVITIP---RFSQHQRTESLNVAMAGAIILSEVM 239


>gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 231

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 63/193 (32%), Gaps = 20/193 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L        ++L       N+  + R      + +  +V+        +  + +A     
Sbjct: 15  LNRRMGDLTVVLEAVDKPHNLSAILRTCDAVGVLEAHVVS---LPGRPRTFNKTAKGSQK 71

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              +    +++  +  L      IY T     +        ++                 
Sbjct: 72  WVPLHPHPSIETCLNGLKEKGFRIYGT-----HLSVDARDYRDCDFT--------GPSCF 118

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           + G E+WG+++E +A+ +  +  P+  +  SLN+S A   +++E +     +     + +
Sbjct: 119 LMGAEKWGMSDEALAMVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRERAGLVPSQGE 178

Query: 184 NTPATKGELLSFL 196
             P         L
Sbjct: 179 GVPGGAEAYRQLL 191


>gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 248

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 19/155 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL- 84
            N+G + R    F+   + +   R    +     +SA A   I  V+V SN+  AI +L 
Sbjct: 109 HNLGAIIRTAEAFSAHGIIIPKRRSAVVNSTVVKTSAGATEYIKIVKV-SNINNAINNLK 167

Query: 85  ---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +I  ++                A V  + +     V I+ G E  G++       +
Sbjct: 168 KQGVWIVGSS--------------LDADVDFQNVDYTGPVAIVIGSEGKGMSELTQKNCD 213

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I   P+     SLN S A  + ++E +   +  +
Sbjct: 214 YIAKIPMRGNINSLNASVAASIFMYEVIRQRMGKA 248


>gi|238759744|ref|ZP_04620903.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
           ATCC 35236]
 gi|238702070|gb|EEP94628.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
           ATCC 35236]
          Length = 296

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 12/152 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 157 PHNLGGIMRTCAHFGINGVLLQDPAILESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 214

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 215 ----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDVSV 264

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           S        SLN+S A  +++ E    + +  
Sbjct: 265 SIGGTGKVESLNVSVATGILLAEWWRQNTLRP 296


>gi|115462009|ref|NP_001054604.1| Os05g0141400 [Oryza sativa Japonica Group]
 gi|46391115|gb|AAS90642.1| putative OBP33PEP [Oryza sativa Japonica Group]
 gi|113578155|dbj|BAF16518.1| Os05g0141400 [Oryza sativa Japonica Group]
 gi|215701017|dbj|BAG92441.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741370|dbj|BAG97865.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630148|gb|EEE62280.1| hypothetical protein OsJ_17068 [Oryza sativa Japonica Group]
          Length = 224

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 33/151 (21%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--- 82
            N+G +AR+   F + ++ +V  RD      +   S  A   +   R F++L  A A   
Sbjct: 22  HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFASLPLARAYLK 75

Query: 83  ---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                                 +     A+ +    F  ++   +FG E  GL+ +E  +
Sbjct: 76  DERGCDICG-------------VEITHNALPVTAHPFR-RSTAFLFGNEGTGLSQKECEI 121

Query: 140 SNAIISFPVNPLFP----SLNISQAVLLMVW 166
            +  +  P    +     SLN++ A  +++ 
Sbjct: 122 CDFFVYIP---QYGGGTASLNVTVAASIVLH 149


>gi|33592532|ref|NP_880176.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
 gi|33572178|emb|CAE41724.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
 gi|332381950|gb|AEE66797.1| putative RNA methyltransferase [Bordetella pertussis CS]
          Length = 257

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 23/172 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L        ++    Q   N+G + R      + ++ L        S K   S   A 
Sbjct: 103 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 162

Query: 66  CVIDSVRVFSNLK-EAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +    +  +L  EA+    D+  +  T AR+ + + + L  +                
Sbjct: 163 FALH---IHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPAR---------------C 204

Query: 122 GIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENS 172
             +FG E  G+    +  +   +  P  +    SLN+  A  + ++E     
Sbjct: 205 AWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 256


>gi|326800579|ref|YP_004318398.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
 gi|326551343|gb|ADZ79728.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
          Length = 176

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 13/171 (7%)

Query: 3   PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P   + +   K PV ++L   +   N+G V R    F + ++ L       P      ++
Sbjct: 7   PSVDEFKQLDKLPVTVVLDSVRSLHNVGSVFRTSDGFAVERILLCGITGTPPHRDIEKTA 66

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQ 119
             A   +   +   N++EAI +L          +   K +   +     +  R     G+
Sbjct: 67  LGATQSVAW-QYEKNIEEAIINL---------KQEGKKIIAIEQAEGSTMLHRFTPVLGE 116

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +  +IFG E  G++ E + L +  +  P      S N+  +  +++W+   
Sbjct: 117 SYALIFGNEVNGVSEEAMKLIDYCVEIPQFGTKHSFNVVISAGIVLWDFYR 167


>gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
           DSM 5476]
 gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
           DSM 5476]
          Length = 258

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VII  + +   N+G + R         + +   R    +     +SA A   +   RV S
Sbjct: 105 VIIADEIEDPHNLGALIRTAECAGAHGILIPKRRSASLTPIVSKTSAGAVSYLPVARV-S 163

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL   I           R +     V              FSG  V ++ G E  GL   
Sbjct: 164 NLALEID----------RLKERGIWVYGADMDGENWCATDFSGG-VALVVGSEGRGLGKL 212

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             +  + I+S P+     SLN S A  ++++E M   +    KN K
Sbjct: 213 VRSKCDVIVSLPMRGQVNSLNASVAGGILMYEVMRQRLNLKAKNSK 258


>gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1]
 gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1]
          Length = 252

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 12/175 (6%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L      P  +L+    Q  +N+G + R      +  + +   R    +    ++S+ A
Sbjct: 88  ALAEERGEPAFLLLLDHIQDPQNVGTLLRTAEVVGVHGVVIPGRRAAEVTPAVVNTSSGA 147

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  V V +NL   I  +                V    +      +R+     + ++
Sbjct: 148 VEHL-RVAVVTNLAATIEQIQHA---------GVWVVGVEDDERAYEYDRVDLDLPLALV 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            G E  GL        + ++  P+     SLN++ A  ++++           KN
Sbjct: 198 LGAEGPGLARLTRERCDFLVRLPMRGQIASLNVAVAGSIVLYHAWRVREQGRTKN 252


>gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 244

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 25/154 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSNLKEAI--- 81
           N G + R      ++ + +  P+ G  S  A    +SA A   +   +V  NL +A+   
Sbjct: 109 NFGAIIRTAECTGVSGIII--PKRGSVSITADTVKTSAGAVFRVPICKV-ENLVDAVYYL 165

Query: 82  --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             + +  + AT          +L  ++  +             I+ G E  G++   + +
Sbjct: 166 QGSGIRVVAAT-----EKTSQLLYAEDFTV----------PTAIVMGAEDVGVSPAVLKV 210

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++    P+     SLN+S A  + ++E ++  +
Sbjct: 211 VDSKAKLPMVGDISSLNVSVACAVFLYEALKQRL 244


>gi|23335009|ref|ZP_00120247.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|23465439|ref|NP_696042.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|189439462|ref|YP_001954543.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|312132870|ref|YP_004000209.1| spou1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482198|ref|ZP_07941220.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690946|ref|YP_004220516.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|23326090|gb|AAN24678.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
           NCC2705]
 gi|189427897|gb|ACD98045.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|311773840|gb|ADQ03328.1| SpoU1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916336|gb|EFV37736.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455802|dbj|BAJ66424.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 292

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+    ++    LV P  G P   +A   S      I   R+            
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              F  + E  +      A    +R+     L  +  A    E       + +IFG E  
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLALIFGTEGD 253

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL++  IA ++  +  P++    SLN++ +  +  +
Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289


>gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 21/171 (12%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P AP     A    I L + Q   N+G + R +  F   +  L++P    P + K   SS
Sbjct: 89  PGAPVAAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFR-CLLSPGSVDPYNPKVVRSS 147

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A        +F       A L    A  + R R    + L  +   +           
Sbjct: 148 MGA--------IFH------APLELDVALDSLRTRFARIACLDMQGEPVQSTAFTT---F 190

Query: 121 VGIIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              +FG E  G+  +++ AL     + P      SLN++  V +  +E   
Sbjct: 191 ECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELSR 241


>gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 357

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R+  +F +  + L +          R++   A+ +  ID+      L +   
Sbjct: 219 PHNLGAIMRSCAHFGVQGVVLQDTAMLESGAAVRTAEGGAEHIKGIDADGFTDTLNKFRN 278

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           + + I  T++                     +    + + ++ G+E  GL++      + 
Sbjct: 279 EGYTIVTTSS-------------HKGSTALAQATLPEKMVLVLGQESDGLSDSIWEDGDI 325

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +S        SLN+S A  +++ E    
Sbjct: 326 RLSIGGTGRVESLNVSVATGILLAEWWRQ 354


>gi|262202744|ref|YP_003273952.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262086091|gb|ACY22059.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 269

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           + V+P+   N G + R         + L+       + K   SSA +   +     R  S
Sbjct: 117 VGVEPREPGNAGTLIRCADAMGADAVVLLGDAVDPHNGKCVRSSAGSIFHLPIVRERSVS 176

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +   AIA        TA +       ++     ++             +FG E  GL  +
Sbjct: 177 DALSAIAAAGVCVLATAADGELILDDISDDADGLLTR-------PTAWLFGNEAHGLPVD 229

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             A+++  ++ P+     SLN++    + ++
Sbjct: 230 VQAMADHRVAVPIRGRAESLNVAATAAICLY 260


>gi|315655513|ref|ZP_07908412.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490168|gb|EFU79794.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 275

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 16/166 (9%)

Query: 6   PQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P +  S +G   +IL   Q   N G + R       + + +        S K   +S  +
Sbjct: 113 PSVTGSPEGNLALILPATQDPGNAGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              + + R F +L   +  L      I  T+     +   +L P  A         S + 
Sbjct: 173 VFHVPTPR-FQDLAAVVKALRAEGWTIVGTSL----SGDVMLTPVTAGTW------SNKK 221

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           V  + G E  GL   E +  + ++S P+     SLN++ A  L +W
Sbjct: 222 VAWVMGNEAHGLDATEESWCDVLVSIPMFGRAESLNVTSAATLCLW 267


>gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
 gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
          Length = 251

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 21/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+        L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 100 VLDGVTDPHNLGACLRSADAAGA--LAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      +I  T               EA + + ++  +G  + +I G E  G+
Sbjct: 158 LARTLEKLQQRGLWIVGTAG-------------EAEVSIYDQDLTGPTI-LIMGAEGKGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + ++  P+     SLN+S A  + ++E        +
Sbjct: 204 RRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQRGAKA 247


>gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
 gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
          Length = 264

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  I L   Q   N+G + R      +  + L+       ++K   S+ +A   +  + V
Sbjct: 115 GVYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSA---LHKIPV 171

Query: 74  FSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           + +     L + IA+ +     TA   +   +++                +   +I G E
Sbjct: 172 YEDVTLSMLNDLIAESNMSTYVTALEESKPYNMVT-------------YDKRCMLILGNE 218

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+T E + L    I  P+     SLN+S A  L +++  E 
Sbjct: 219 GNGVTPEVMNLCKHRIMIPMYGDIESLNVSVAAALCMYKAQEQ 261


>gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 262

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 12/142 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G V R         + LV       S +   ++  +   +   +  ++++E +   
Sbjct: 129 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK--ASVQEFL--- 183

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  A       SV+     A V ++     +   I+ G E+ GL  E  A  +  +
Sbjct: 184 -------AWRETWPGSVIGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNV 236

Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
             P+     SLN+S A  +M++
Sbjct: 237 KIPMRGRADSLNLSVATGIMIY 258


>gi|88799008|ref|ZP_01114589.1| putative tRNA methyltransferase [Reinekea sp. MED297]
 gi|88778235|gb|EAR09429.1| putative tRNA methyltransferase [Reinekea sp. MED297]
          Length = 224

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 6   PQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            Q+ N  +  + IL D     +N+  + R   +  +  + +V P  G        ++  A
Sbjct: 10  QQVLNQRQNDMTILTDKVHKSQNVSAIMRTADSVGIPTVHMVKPERGRL--VYHHTAGGA 67

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +D V V+  L E I         + RN           + AI   E  ++ +   +I
Sbjct: 68  SRFVD-VIVYETLSEGIQ--------SLRNAGMALYAAHWSDRAISYREADYT-RPFALI 117

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            G E++G++ E    ++  +  P+     SLN+S A  +++ E M   +    
Sbjct: 118 LGAEKYGISPEAADAADEHLIIPMVGACESLNVSVASGIILQEAMHQRMAQQA 170


>gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp.
           PRwf-1]
          Length = 261

 Score = 57.0 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 30/170 (17%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI------D 69
           +L       N+G   R      +    ++ P+      +      S  A  ++      +
Sbjct: 110 VLDQITDAHNLGACLRTAAAMGVD--AVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTN 167

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R   NLK+A     F+Y T                 A  L +    G  V II G E 
Sbjct: 168 LARCIENLKQA---GVFVYGTAL------------DATAKALPDVDLKG-KVAIIMGSEG 211

Query: 130 WGLTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVS 175
            G+        + ++  P+    +    SLN+S A  ++++E        
Sbjct: 212 EGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLYEVSRQRHQP 261


>gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
           F0254]
 gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
           F0254]
          Length = 233

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 17/173 (9%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           + +  +L    K  V++L   Q   N G + R+   F +  + + +      +E    SS
Sbjct: 75  SAFLEKLLKKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSS 134

Query: 62  ANADCVIDSVRVF---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A   +D V+V      + +     + +Y   A  +N +     P              
Sbjct: 135 TGAIEHVDIVKVTNISDTIDKLKKYGYAVYGAEADGQNYYYEENYP-------------- 180

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   ++ G E  G+  +     + I+   +     SLN+S A  +++ E  ++
Sbjct: 181 EKACLVLGSEGNGMRKKVKEHCDKIVKIHLKGQINSLNVSVAGGIILAEMSKS 233


>gi|331701050|ref|YP_004398009.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128393|gb|AEB72946.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 170

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 37/171 (21%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5   IVLFEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSIDDKHLKRA--GLDYWDKVQINY 60

Query: 74  FSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             NL E +  +      F+ +  A           P              Q+  ++FG+E
Sbjct: 61  HQNLPEFLKSVKNPQNLFLVSKFANQDYTDPDYSDP-------------SQDYYLLFGKE 107

Query: 129 RWGLT------NEEIALSNAIISFPVNPL-FPSLNISQAVLLMVWECMENS 172
             GL       N E       I  P +     +LN+S    ++++E +   
Sbjct: 108 TTGLPEPFMRQNPE-----KAIRIPQDDDNIRALNLSNTCAIVIYEVLRQQ 153


>gi|323457320|gb|EGB13186.1| hypothetical protein AURANDRAFT_6212 [Aureococcus anophagefferens]
          Length = 147

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL   + GEN+G V R         L         P+     ++ NA   +D  R  S
Sbjct: 3   TVILDGLRSGENVGNVIRTCETAGARVLC-CGTTPAPPTPAVLKAACNAAPFVDVRREPS 61

Query: 76  NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            L    A+             R +   +      A +            ++FG E  G+ 
Sbjct: 62  TLDAVRALQGRGVAVYALETTRGSV-PLYDADLPAPL-----------ALVFGNELVGVH 109

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +A  + ++S P   +  SLN++      V+E +  
Sbjct: 110 PDVLAACDGVVSLPTFGVKNSLNVASCAAAAVYEVVRR 147


>gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 330

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F    + L   R    +  A   SA A   +   RV  N
Sbjct: 179 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 237

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +A+  L     ++                       + E  F    + ++ G E  GL
Sbjct: 238 LTKALEGLKERGYYVVGLDGGGDKL-------------VGETGFESDPLVVVLGSEGSGL 284

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                   +AI   P++    SLN S A  + ++        ++ +
Sbjct: 285 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 330


>gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
 gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
          Length = 264

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 16/162 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--S 70
              V++L   +   N+G + R+        + L        + K   S+  +   +    
Sbjct: 114 NSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGKGSVDLYNPKTVRSTMGSLFHLPIIE 173

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +   L EA +    +  T+                A              ++ G E  
Sbjct: 174 ADLAELLPEAQSKGIKLVGTS--------------LQATHTCYTYDWTAGTWLLMGNESE 219

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL++      +  +  P+     SLN++ A  ++++E +   
Sbjct: 220 GLSDAVRLAVDESVIIPMQGEAESLNVAMAATVLLYEAVRQR 261


>gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 271

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 7/153 (4%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   +   N G V RA        + L        + K   S+A +   +  V     L
Sbjct: 115 VLAHVRDPGNAGTVLRAADAAGADAVVLTASSVDVHNPKTVRSTAGSLFHLP-VVPGPEL 173

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L      + A      ++   +L    AA      +   +    +FG E WGL 
Sbjct: 174 PDAVGALRSAGLTVLAAAGSGEHDLDDLLDVVGAAPAGVPDLS--RPTAWVFGNEAWGLR 231

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +E++AL++A +  P+     SLN++ A  + ++
Sbjct: 232 DEDLALADATVRVPLRGRAESLNLATAATVCLY 264


>gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
           16795]
 gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
           16795]
          Length = 265

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   Q   N+G + R   +  +  + L+       + K   S+  +  + D   + +
Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPKVIRSTMGS--IFDMNIIQT 177

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              EA+    F+ A      NNF  V +        NE  + G  + ++ G E  G+ +E
Sbjct: 178 TQDEAV---DFLKA------NNFDIVSSYLHTESYYNETTYDG-KIALVIGNEANGINDE 227

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+ S+ ++  P+     SLN + +  ++++E  +
Sbjct: 228 LISKSDKLVKIPIYGNAESLNAAISAAILMYEIKK 262


>gi|238752954|ref|ZP_04614415.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
           ATCC 43380]
 gi|238708815|gb|EEQ01072.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
           ATCC 43380]
          Length = 371

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 233 PHNLGGIMRTCAHFGINGVLLQDPAILESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 290

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 291 ----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 340

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           S        SLN+S A  +++ E    +   
Sbjct: 341 SIGGTGRVESLNVSVATGILLAEWWRQNSAQ 371


>gi|56753289|gb|AAW24848.1| SJCHGC03201 protein [Schistosoma japonicum]
          Length = 237

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 30/170 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH- 85
           N G + R+   F ++ + L       PS      S  A   ++S+R +  L + + D+  
Sbjct: 54  NFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGA---MESIRFYR-LTDTVMDMKS 109

Query: 86  ------FIYATTARNRNNFKSVLAP-------KEAAIVLNERIFSGQNVGIIFGRERWGL 132
                  I  T   N+     V  P       +  A   N    S + + +  G E  GL
Sbjct: 110 LSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPLVLALGSESRGL 169

Query: 133 TNEEIALSNAIISFPV---NPLF---------PSLNISQAVLLMVWECME 170
           +   +   + ++  P    +  F          SLN++ A  +++++   
Sbjct: 170 SENILNSCDLLLRIPGFGDSTKFNHCVSQSIPSSLNVAVATGILLYQLTM 219


>gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
          Length = 249

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62
            L   +K PV+IL+        N+G   R+     +    +V P+D   +        + 
Sbjct: 88  TLLERSKKPVLILILDGITDPHNLGACLRSADATGVD--FVVIPKDKSANITPVVSKVAC 145

Query: 63  NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   I  VRV +NL  A+        +I+                   A  L   +   
Sbjct: 146 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAEHLLYAMDCS 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            N+ ++ G E  GL        + + S P+     SLN+S A  + ++E +       E
Sbjct: 191 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 249


>gi|293190410|ref|ZP_06608842.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292820994|gb|EFF79949.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 243

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 15/140 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R        ++ +V  R  W    A  +    D  +  V     ++E +     
Sbjct: 107 NIGSIVRTANAMGARRVHVVG-RKRWNRRGAMVT----DRYLP-VDHRPEVRELVEHCS- 159

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                          +   E   V  E     +   ++FG E  GL+ E I   + +++ 
Sbjct: 160 -------KEGLTLVGVDNVE-GSVALEGAVLPERACLVFGSEASGLSEEMIRACDIVVAI 211

Query: 147 PVNPLFPSLNISQAVLLMVW 166
                  S+N+  A  +++W
Sbjct: 212 TQRGSTRSMNVGHAAAIVMW 231


>gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 257

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 15/162 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--S 70
              V+IL D Q   N G + R      ++ + L        + K   S+  +   +    
Sbjct: 108 NPLVMILEDLQDPGNAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGSVYRMPFLY 167

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V    +L + + D +         R     +           ++         + G E  
Sbjct: 168 VESVVSLAQELKDRNI--------RTFAAHL-----HGKNSYDQESYTGGTAFLIGNEGK 214

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GLT+E    ++ +I  P+     SLN + A  ++++E     
Sbjct: 215 GLTDEAADSADCLIRIPMCGKVESLNAAMASGILMYEAARQR 256


>gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
 gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
          Length = 269

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 19/166 (11%)

Query: 6   PQLQNSA-----KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARS 59
           P LQ+       K  +++L      +N+G + R    F  +   +V+         K+  
Sbjct: 109 PSLQSFLQHLPEKALILVLCGISNHDNMGSIFRNAAAFA-SNGIIVDKTSCDPLYRKSIR 167

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            SA A             + A  D++ I A   +++N     L+P  +A    ++    +
Sbjct: 168 VSAGA------ALKVPYTQNA--DINDIIA-ALKDKNFHLYALSP--SASHTLKQANKTK 216

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            + +IFG E  GL    +  S   +  P+   F SLN++ A  + +
Sbjct: 217 RMALIFGTEGDGLPTHILQQS-KTLRIPMTNGFDSLNVATASGIAL 261


>gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
          Length = 292

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+    ++    LV P  G P   +A   S      I   R+            
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              F  + E  +      A    +R+     L  +  A    E       + +IFG E  
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLALIFGTEGD 253

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL++  IA ++  +  P++    SLN++ +  +  +
Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289


>gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 333

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F    + L   R    +  A   SA A   +   RV  N
Sbjct: 182 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 240

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +A+  L     ++                       + E  F    + ++ G E  GL
Sbjct: 241 LTKALEGLKERGYYVVGLDGGGDKL-------------VGETGFESDPLVVVLGSEGSGL 287

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                   +AI   P++    SLN S A  + ++        ++ +
Sbjct: 288 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 333


>gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301]
 gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp.
           longum F8]
 gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. longum JDM301]
 gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
          Length = 330

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F    + L   R    +  A   SA A   +   RV  N
Sbjct: 179 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 237

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +A+  L     ++                       + E  F    + ++ G E  GL
Sbjct: 238 LTKALEGLKERGYYVVGLDGGGDKL-------------VGETGFESDPLVVVLGSEGSGL 284

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                   +AI   P++    SLN S A  + ++        ++ +
Sbjct: 285 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 330


>gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
           opportunistum WSM2075]
 gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
           opportunistum WSM2075]
          Length = 282

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 13/169 (7%)

Query: 3   PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P  P+  ++     ++LV        N+G + R+   F    L          S     S
Sbjct: 119 PLKPKRLDALGDTKLVLVLDQVTDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKS 178

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++ A   ID + V  NL +A+  LH            F+++    +    L E  F+G  
Sbjct: 179 ASGALEHIDQIEV-KNLADALGQLH---------EAGFQTIGLDSDGPAEL-ETSFAGDR 227

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           V ++ G E  GL  +       +    +     SLN+S A  + ++   
Sbjct: 228 VALVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 276


>gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
 gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
          Length = 258

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 11/160 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V+IL       N G +AR+     +  + + +      +  A  +SA A   +  VR
Sbjct: 108 SPLVLILDRITDVRNFGAIARSAECAGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVVR 167

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V +           ++ T    +    +++A  E +            V +I G E  G+
Sbjct: 168 VKN-----------LFYTCRDLQKMGLTLVAITEKSDKDMYEADFASPVAMIMGSEEDGI 216

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +NE + +++  ++ P+     SLN+S +  + ++E M   
Sbjct: 217 SNELMGIADEKVNIPMLGKIESLNVSVSAGVAIYEAMRQR 256


>gi|257146503|emb|CAX30790.1| tRNA (Guanosine-2'-O-)-methyltransferase [SBR proteobacterium]
          Length = 239

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  V R      + Q+  +  ++   S  A ++ +N       ++  + ++ AI+  
Sbjct: 30  PHNISAVIRTADAVGIPQIHAIWCKNSSKSLSAAAAGSN---HWVKIKTHATIENAISTC 86

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             +           + + A      +   +I   Q   II G+ER  ++ + +AL++  I
Sbjct: 87  KAV---------GMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALALADHNI 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
             P+  +  SLN+S A  L+++E       +S  +      P  + +     +
Sbjct: 138 HIPMMGMVQSLNVSVASALILYEAQRQRQDASMYDSLFSQLP-EEEQQEWLFE 189


>gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 289

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 58/181 (32%), Gaps = 33/181 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           ++   K   I L   +   N+G + R         + L+       S +   ++  +   
Sbjct: 124 IKGQIKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSTETVRATMGSIFS 183

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++    F            I  T  +   +++++              F
Sbjct: 184 VPLYRLDESAFLNWSAHFK---------GMIVGTHLKGSLDYRTLD-------------F 221

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               + ++ G E+ GL++      + +   P +    SLN++ A  +M++E     ++  
Sbjct: 222 KNGPIILLMGNEKQGLSDLLTNRCDKLARIPQSGRADSLNLAVATAVMLYEIRRPYLILE 281

Query: 177 E 177
            
Sbjct: 282 P 282


>gi|187250688|ref|YP_001875170.1| putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum
           Pei191]
 gi|186970848|gb|ACC97833.1| Putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum
           Pei191]
          Length = 148

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 66/162 (40%), Gaps = 23/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L++P++  N G + R+      T+L LV  + G+  E      +  D  ++   + + 
Sbjct: 3   IVLINPEIPFNTGNIGRSCVATG-TKLHLVG-KLGFKIEDKEIRRSGLDYWVNLDYKTYK 60

Query: 76  NLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +      ++ +   ++  + + + +F  +  P               +  +IFG E  G 
Sbjct: 61  DFDGFLSSVENKESMFFFSTKGKKSFWDIKYP--------------PDSYLIFGSESCGF 106

Query: 133 TNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             E  E      + + P+     SLN+S +  ++++E +   
Sbjct: 107 PKEIYETYK-EKLFTIPMTGPVRSLNLSTSAGVVLFEALRQQ 147


>gi|227892813|ref|ZP_04010618.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227865454|gb|EEJ72875.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 255

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P      + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L + I D   +               +  +      +       + +I G E  G+++ 
Sbjct: 171 DLADVITDFQDVA---------IPVYASMLDKKAKQLQDFAKVPQLALIIGNEAHGVSST 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +L +  +  P+     SLN + A  +M++
Sbjct: 222 IASLCDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42]
 gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42]
          Length = 248

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 21/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64
           + +      +++L       N+G   R           ++ P+D      A  +  ++ A
Sbjct: 93  EARGVKNPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVASGA 150

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +    V +    L E      ++  T+                A     ++     V
Sbjct: 151 AETVPYFMVTNLARTLNELKERNIWVIGTSG--------------DADKTLYQVDLKGPV 196

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 197 ALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALRQR 247


>gi|103486832|ref|YP_616393.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98976909|gb|ABF53060.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 152

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N+G + R    F +    ++ P  G+P   A    A  D           
Sbjct: 3   IALFQPDIAGNVGTILRTASCFGVPA-HIIEP-CGFPFGDAALRRAGMDY---------- 50

Query: 77  LKEAIADLHFIY---ATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              A AD+         +  +     + VL     A  L +  F+  ++ ++FG E  G+
Sbjct: 51  --AARADVRRHADWDGFSGWSHSTAGRLVLLTTAGATRLPDFAFAHGDI-LLFGSESAGV 107

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                A +   ++ P+ P F  LN++ A  + + E +  +
Sbjct: 108 PPHVHAAAAERVAIPMQPGFRCLNVAVAAGIALAEALRQT 147


>gi|225010432|ref|ZP_03700903.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
 gi|225005261|gb|EEG43212.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
          Length = 177

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG V R    F +T++ L       P +    ++  A   +      + L E + +L  
Sbjct: 37  NIGSVFRTADAFLVTKIYLCGITAQPPHKDINKTALGATETVAWEYRENTL-ELVKELQ- 94

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV-GIIFGRERWGLTNEEIALSNAIIS 145
                   ++     +   + A  L++     +    +IFG E  G+    +  S+ ++ 
Sbjct: 95  -------AQSIAVWSVEQAQGATFLDKMSLQPETTYALIFGNEVKGVQQAVVNESDGVVE 147

Query: 146 FPVNPLFPSLNISQAVLLMVWECME 170
            P      SLNIS +  ++VW+  +
Sbjct: 148 IPQFGTKHSLNISVSAGVVVWDFWK 172


>gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
           27678]
 gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
 gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
           27678]
 gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
          Length = 329

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F    + L   R    +  A   SA A   +   RV  N
Sbjct: 178 IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV-N 236

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AI         + + R  +   L     A ++ E  F    + ++ G E  GL+   
Sbjct: 237 LTKAIE--------SLKERGYYSIGLDGGGDA-LVGETGFETDPLVVVLGSEGNGLSRLV 287

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  + I   P++ +  SLN S A  + ++
Sbjct: 288 RSTCDVIAGIPMSSMVESLNASVAAGITLY 317


>gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 330

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 18/161 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++ L       N+G V R+   F    + +   R    +  A  +S+ A   +   R  +
Sbjct: 181 IVALDGVTDSRNLGAVVRSAAAFGAHGVVIPERRAAGMTAGAWKTSSGAAARLPVAR-AT 239

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL  A+         +    A             +    + +       V I+ G E  G
Sbjct: 240 NLTRALESYQKAGVMVVGLAA-------------DGEAEIGDLDALNGPVVIVAGSEGKG 286

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L+       + ++  P+     SLN   A  ++++E     
Sbjct: 287 LSRLVSETCDLLVRIPMPGQTESLNAGVAAGIVLYEAARLR 327


>gi|119472959|ref|ZP_01614815.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119444628|gb|EAW25938.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 228

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 20/156 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS---SANADCVIDSVRVFSNLKEAIA 82
            N+  + R+        +  V     WP  +   +   S  +   ++   +  N+ +A  
Sbjct: 31  HNLSAIVRSADAVGCHHVHAV-----WPENQKWLTNNTSGGSKNWLE-THLHKNIDDA-- 82

Query: 83  DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 AT  R  N    +LA    E A+   E I   +   II G+E+ G++ + +  +
Sbjct: 83  ------ATMMRQHNPNVQILATHLSEDAVDFRE-IDYTKPTAIIVGQEKTGISAQALKHA 135

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  I  P+  +  SLN+S A  L+++E       + 
Sbjct: 136 DQNIIIPMQGMVQSLNVSVAAALILFEAQHQREKAG 171


>gi|114704756|ref|ZP_01437664.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114539541|gb|EAU42661.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 150

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 17/160 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARSSSANADCVIDSVR 72
             I L  P +  N G V R         LR+  + P     S+++   +      +    
Sbjct: 3   ISIALYQPDIAGNTGAVMRTAA---CLDLRIEIIEPTGFELSDRSLKRA--GMDYLSLAN 57

Query: 73  VFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +  +L  EA            R R   + +L   +A  V+ +  F   ++ ++FGRE  G
Sbjct: 58  LTKHLDFEAFE--------AWRKRAGRRLILLTTKADTVVWDFEFRDDDI-VMFGRETAG 108

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  E  A ++A ++ P+     S+N+S +V L+  E +  
Sbjct: 109 VPVEVHAAADARLTIPMQTGARSMNLSASVALVCGEAVRQ 148


>gi|86130258|ref|ZP_01048858.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818933|gb|EAQ40092.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 218

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 12/140 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+  +F + +L ++   +    ++  +    A   +D  R  ++    I    
Sbjct: 43  HNTSAVIRSCESFGVQELHVIEEVNAKRIDREIAM--GAQKWVDVAR-HNSASSCIK--- 96

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                + R +       +P + A  L E   + +   I FGRE  GL+   +  ++  I 
Sbjct: 97  -----SLREQGYKIVATSPHKDAHRLEEFDVT-EKAAIFFGRETEGLSELVMEEADDFIY 150

Query: 146 FPVNPLFPSLNISQAVLLMV 165
            P+     SLNIS +  + +
Sbjct: 151 IPMVGFTESLNISVSAAITL 170


>gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 248

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 19/155 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL- 84
            N G + R    F+   + +   R    +     +SA A   +   +V SN+  AI +L 
Sbjct: 109 HNFGAIIRTAEAFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKV-SNINNAINNLK 167

Query: 85  ---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +I  ++   + +F +V                 Q + I+ G E  G++       +
Sbjct: 168 KQGVWIVGSSVDAKEDFSNVDY--------------DQPIAIVIGSEGEGISELVKKNCD 213

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            ++  P+     SLN S A  + ++E +   I  +
Sbjct: 214 YLVKIPMMGNMNSLNASVAASIFMYEVVRQRIGKA 248


>gi|297560901|ref|YP_003679875.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845349|gb|ADH67369.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 221

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 28/177 (15%)

Query: 19  LVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           LV+   Q   N+G + R    F + QL L          K   ++      ++  R+ S 
Sbjct: 63  LVESVTQ-PYNLGSILRTAATFGVDQLWLTGNSANPDDPKVGKTALGTAAKVEHTRMAS- 120

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------NVGIIFGRERW 130
                            +          +  A+ L              +V +  G E  
Sbjct: 121 ---------------TADALAAARADGYRVVAVELASGALPLHAAPLEPDVCLAVGAEDH 165

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           G +   +A ++A+   P      SLN++ A  + + E              E + PA
Sbjct: 166 GCSPALLAGADAVTYVPQIGRVGSLNVAVATAIALSEARRREWAGLG---GEADAPA 219


>gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 250

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 23/177 (12%)

Query: 3   PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKAR 58
            +   L  S+K P +IL+        N+G   R      +    +V P+D   S      
Sbjct: 84  SHLRALLESSKSPGLILILDGITDPHNLGACLRTADATGVD--FVVIPKDKSASITPVVS 141

Query: 59  SSSANADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
             +  A   +  VRV     ++        +IY                   A     ++
Sbjct: 142 KVACGAAESVPLVRVTNLVRSMDLLKEQGVWIYGAAG--------------EAEHSLYQV 187

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++ G E  GL        + + S P++    SLN+S A  + ++E +   
Sbjct: 188 DCRGTIALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLYEVLRQR 244


>gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 249

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           PQL    K P ++IL       N G + R      +  + +        +  A  +SA A
Sbjct: 86  PQLFEQGKTPFLLILDRLTDVRNFGAICRTAECVGIDAVIIPEKGAAPINSDAIKTSAGA 145

Query: 65  DCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              I ++++   +NL   +  L            +  SV A  E A  L   +   +   
Sbjct: 146 ---IYNIKICKENNLAHTVDFLQ----------QSGISVYAASEKAQKLIYDVNMTEPCA 192

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           I+ G E  G++ E +  ++  I  P+     SLN+S A   +++E +   + 
Sbjct: 193 IVMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVACGAILYEAVRQKMA 244


>gi|168061044|ref|XP_001782501.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665986|gb|EDQ52653.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 222

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 10/173 (5%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NI  V R+        + +++       +K R  S  ++  +D   ++ N  + IA   
Sbjct: 60  GNISAVFRSADALGFQSVHVISTETKKRYKKNRKVSRGSETWLD-AEMWENSSDCIA--- 115

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T R R    +V       + + +         +IFG E  G + E +  S+    
Sbjct: 116 -----TLRKRGYRIAVTHIAPNTVSIQDM-DWTIPTAVIFGNEYKGASEEAVKQSDIRCC 169

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
            P+  +  S N+S A  +++     + I+ S  +           E   ++ +
Sbjct: 170 IPMGGMVESFNVSVAAGIIMHHAAHDRIIRSGTHGDIPPQHRKILEAEFYMRH 222


>gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
           DSM 20109]
 gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
           DSM 20109]
          Length = 333

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 22/167 (13%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSV 71
             V+ L       N+G V R+   F      LV P  R    +  A   SA A      V
Sbjct: 183 PLVVALDGITDPRNLGAVLRSAGAFGAHG-VLV-PERRAAGVTASAWKVSAGAAAR-VPV 239

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +NL  A+ D      F+    A                + L +  F+   + ++ G 
Sbjct: 240 ARATNLTRALQDYRRAGVFVVGLDAGGD-------------VPLADLPFAADPLVLVVGS 286

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           E  GL+       +AI+S P+     SLN   A  + ++E      +
Sbjct: 287 EGKGLSRLVREQCDAIVSIPIASAVESLNAGVAAGIALYEVARQRAL 333


>gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
 gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
          Length = 324

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 11/172 (6%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   +      ++ L       N+G +AR+   F    L +   R    +  A  +SA  
Sbjct: 164 AEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAHGLLVPERRAAGVTTAAWKASAGT 223

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I   +V  NL   +          +    +  + L   E A          +   ++
Sbjct: 224 LARIPVAQVV-NLTRTLKQFQEAGFFVSGLDADGDTPLDQWELAT---------EPSVVV 273

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G E  GL+       + ++S P++    SLN S A  + ++E +     + 
Sbjct: 274 VGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALYEAVRRRTAAK 324


>gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 247

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 99  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 158

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 159 VTNLSQTLDKLKEASFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 203

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +IS P+N    SLN S A  ++++E   N +
Sbjct: 204 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 247


>gi|257146499|emb|CAX30787.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Mocydia crocea]
          Length = 239

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           Q   II G+ER G++ + +AL++  I  P+  +  SLN+S A  L+++E     
Sbjct: 112 QPTCIILGQERAGISKQALALADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           gallicum DSM 20093]
 gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           gallicum DSM 20093]
          Length = 348

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 10/156 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 185 NARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPI 244

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV  NL +AI  L        + R  +   L     +  + +  F    + ++ G E  
Sbjct: 245 ARVV-NLTKAIEGL--------KERGYYAVGLD-GSGSKEVGQTGFETDPLIVVLGSEGK 294

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL+       + I   P+  +  SLN S A  + ++
Sbjct: 295 GLSRLTREACDCIAGIPMTSMVESLNASVAAGITLY 330


>gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
 gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
          Length = 264

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 18/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
            IL + +   N+G + R         + +   R    +     +SA A       +V + 
Sbjct: 118 FILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNI 177

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E + +    +A                +    L  +     ++G++ G E  G++
Sbjct: 178 SKTIEE-LKERGMWFACA--------------DMDGELMYKCNLTGSLGLVIGNEGNGVS 222

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                  + ++S P+     SLN S A  ++ +E +   +
Sbjct: 223 RLVKEKCDYVVSVPMKGDIDSLNASVAAGVLAYEVVRQRM 262


>gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri]
 gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri]
          Length = 262

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 14/152 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F  T + L N      ++K   +S  A  +       +NL E I 
Sbjct: 118 QDPGNVGTLIRTGLGFGFTNIILYNHTVDLFNDKVLRASQGA--IFKVAIKEANLIE-IK 174

Query: 83  DLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           +         TT   R +              + +    +   +  G E  GL+     +
Sbjct: 175 NFQLNRYKIITTGLKRQSV--------FLQDCHCQFKQNERYILALGNEGHGLSTTLQEI 226

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           S+  +   +N    SLN++QA  ++++E    
Sbjct: 227 SDYNVQIKINSQLESLNVAQAGTILMYEINRQ 258


>gi|24214562|ref|NP_712043.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|24195527|gb|AAN49061.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
          Length = 220

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 23/166 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +  +   G  +IL   Q   N+G + R    F +T + L        +      ++ A 
Sbjct: 63  EEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGAL 122

Query: 66  CVIDSVRVF------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             +   ++F      + L+    + ++I +T+ R                    ++    
Sbjct: 123 SFL---KIFTVKNLANTLELLKENGYWIVSTSDR--------------GTEDWSKLPDLN 165

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            + I+ G E  G+    +  S+ ++  P++    SLN++ A  +++
Sbjct: 166 ELVILMGNEGEGIKRILMEKSDFVLRIPMHGNLSSLNVTVATGIVL 211


>gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 270

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R+     + L P+  A+ L E       V ++ G E  GLT + IA ++  +  P+    
Sbjct: 192 RDGGFRVAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGV 251

Query: 153 PSLNISQAVLLMVW 166
            SLN++ A  +   
Sbjct: 252 DSLNVATAGAIAFH 265


>gi|119962280|ref|YP_948432.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119949139|gb|ABM08050.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 155

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVF 74
            I+   P++  N G   R        +L LV P  G+    A+   A  D   +  V V 
Sbjct: 3   RILFHTPEIPGNTGNAIRLAAITG-AELHLVEPL-GFDFSDAKLRRAGLDYHDLAVVTVH 60

Query: 75  SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +++ A A L    ++A T+                      I   +   ++FG E  GL
Sbjct: 61  KDIEAAWAALKPERVFAYTS--------------DGETSYTDISYREGDVLMFGPESVGL 106

Query: 133 TNEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +      +    +  P+ P   SLN++ A  + V+E    +  +  K
Sbjct: 107 PDWLKQDPHVTARVRLPMKPSLRSLNLANAASIAVFEAWRQNGFAGAK 154


>gi|295690458|ref|YP_003594151.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295432361|gb|ADG11533.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 268

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 16/161 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            A+  V++L      +NIG + R    F    + L          KA   S  A   + +
Sbjct: 118 PARAVVLVLCGIANHDNIGGIYRNAAAFGADAVILDADCCDPLYRKAIRVSVGAALSVPT 177

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            R+    ++ + +A+  F               LA   +A  +  R+       ++ G E
Sbjct: 178 ARLGRGEDIADLLANTGF-------------EALALSPSASEVLARLKPAPRTAVLLGAE 224

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             GL+ + +A +   +  P+   F SLN++    +++    
Sbjct: 225 GPGLSPDVMARA-RTVGVPMAKGFDSLNVATTSGIVLHHLR 264


>gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus]
 gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
           floridanus]
          Length = 254

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANA 64
           + +N+    +++L       N+G   R+     +  + +V PRD   +  A  R  ++ +
Sbjct: 90  KTKNNIIPLLLVLDGITDPHNLGACIRSADAAGVH-MIIV-PRDRSANVNATVRKVASGS 147

Query: 65  DCVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +  VRV +    LK  +   + +I  +  R+              I+ N R+     
Sbjct: 148 SDRVPFVRVTNLSRTLK-LLKKYNIYIVGSVLRS------------NQILFNTRLID--P 192

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + ++  P      SLN+S A  + ++E +   
Sbjct: 193 IALVMGSESSGIRRLTRENCDKLVHIPTLQSTVSLNVSVATGIFLFETVRQR 244


>gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
          Length = 253

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 22/173 (12%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L  S   P ++IL       N+G   R+     +  + +   R    +  A+  +  A
Sbjct: 96  PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 155

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +  +RV +             A T R     N   V    EA   L +   +G  + 
Sbjct: 156 AESVPLIRVTN------------LARTXRXLQEENIWIVGTAGEADHTLYQSKXTG-RLA 202

Query: 123 IIFGRERWG---LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G   LT E     + +IS P      SLN+S A  + ++E +   
Sbjct: 203 LVXGAEGEGXRRLTRE---HCDELISIPXAGSVSSLNVSVATGICLFEAVRQR 252


>gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
 gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
          Length = 247

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           +L +  +GP ++LV        N+G   R        Q  +V P+D     +   R  + 
Sbjct: 88  ELLDRCEGPPLLLVLDGVTDPHNLGACLRTADAAG-AQAVIV-PKDKSATLNATVRKVAC 145

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  V+  V V +NL   +  L        R R    +V    E    L      G  V 
Sbjct: 146 GAAEVVPLVAV-TNLARTLEKL--------RQRGL-WTVGTAGEVEQELYGVDLRGPTV- 194

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +I G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 195 LIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
           ATCC 33386]
 gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
           ATCC 33386]
          Length = 234

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +  +  ++    +  V++L   Q   N G + R+   F +  + + +      +E    S
Sbjct: 74  LNEFLEKVLAKQRSIVLVLDQIQDPRNFGAIIRSAECFGVDGIIIQDRNSVSVTETVVKS 133

Query: 61  SANA---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S  A     +I    V  ++ +     +FIY   A     + +   P             
Sbjct: 134 STGAIEHVDIIKVTNVSDSMDKLKKYGYFIYGAEADGETEYYNEPFP------------- 180

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + + ++ G E  G+  +     + I++ P++    SLN+S A  +++ E  +N
Sbjct: 181 -EKLCLVLGSEGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILLAEISKN 233


>gi|221215472|ref|ZP_03588436.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
 gi|221164656|gb|EED97138.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
          Length = 260

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 19/172 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P L        ++L   Q   N+G + R+     +       P   +  S K   + 
Sbjct: 103 PSQP-LPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRAG 160

Query: 62  ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A  V+    +  ++  +A+A         AR       V                 Q 
Sbjct: 161 MGAHFVLS---IHEDVAPDALA---------AR---LDVPVALTDSHGAQAIYDCDLSQP 205

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V  +FG E  G++     ++   ++ P      SLN++ A  + ++E +   
Sbjct: 206 VAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|154507934|ref|ZP_02043576.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797568|gb|EDN79988.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
           17982]
          Length = 243

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 49/140 (35%), Gaps = 15/140 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R        ++ +V  R  W    A  +    D  +  V     ++E +     
Sbjct: 107 NIGSIVRTANAMGARRVHVVG-RKRWNRRGAMVT----DRYLP-VDHRPEVRELVEHCS- 159

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                          +   E   V  E     +   ++FG E  GL+ E I   +++++ 
Sbjct: 160 -------KEGLTLVGVDNVE-GSVALEGAVLPERACLVFGSEASGLSEEMIRACDSVVAI 211

Query: 147 PVNPLFPSLNISQAVLLMVW 166
                  S+N+  A  +++W
Sbjct: 212 TQRGSTRSMNVGHAAAIVMW 231


>gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 267

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+          L+ PR   P   ++   +  A   +   R+  +   A+ +L 
Sbjct: 132 NIGAIFRSGAALGF-DAVLLAPRCADPLYRRSIKVAMGAVFAVPWTRL-PDWYGALPELS 189

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
               TT          L     A+ +   +     V ++ G E  GL+      ++    
Sbjct: 190 AAGFTTV--------ALTLATDAVPIESAVAGLDKVALVLGSEGHGLSPRWEQAADRRAI 241

Query: 146 FPVNPLFPSLNISQAVLLMVW 166
            P+     SLN++ A  +  +
Sbjct: 242 IPMREGIDSLNVAAATAVACY 262


>gi|323139053|ref|ZP_08074112.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
 gi|322395713|gb|EFX98255.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
          Length = 158

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 14/168 (8%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                + L  P + +N G + R           ++ P     +++    +      +D V
Sbjct: 1   MTPLTLALYQPDIPQNAGAMLRTCACLG-ADAAIIGPAGFPVADRDFRRA--GMDYLDQV 57

Query: 72  RVFSNLKEAIADLHFIYATTARNR----NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            +          + F      R R     + + ++     A              ++ GR
Sbjct: 58  TIA-------RHVSFAAFMDWRARLAEAGDRRRLVLLSTRASKSYADCAYQPGDVLLVGR 110

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           E  G+ ++  A ++  +  P+ P   SLN++ +  +++ E +      
Sbjct: 111 ESAGVPDDVFAAADITVRIPMRPGARSLNVAVSAAIVLSEALRQLGAD 158


>gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           224-1]
 gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           224-1]
          Length = 275

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 18/147 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R      +  + +   R    +     +S  A   +   RV       K 
Sbjct: 110 EDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKL 169

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++I+ T     +  K                 +     ++ G E  G++   +  
Sbjct: 170 LKKRGYWIFGTAMEGEDYRKW---------------NANGKTVLVIGNEGKGISPLLLKQ 214

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  ++ P+     SLN S A  ++++
Sbjct: 215 MDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|254293112|ref|YP_003059135.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254041643|gb|ACT58438.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 152

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSVRV 73
           I    P + +N+G   R    F+ T++ ++ P     + KA   SA        ++    
Sbjct: 3   IAFYQPDIPQNLGSNFRIAACFS-TKVDIIGPCGFPLTAKALRRSAMDYGPMVDVEQHDS 61

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +++ K             + +R   + VL   + A  L E  F   +  ++FGRE  G+ 
Sbjct: 62  WTSFKN------------SPDRKKGRLVLFTTKGATPLLETKFESGDT-LLFGRESAGVP 108

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +E    +      P+NP   SLN+S +  + + E +  +
Sbjct: 109 DEVHDSAQIRCVIPLNPEARSLNVSVSAAIALHEALRQT 147


>gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           202-4]
 gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           MV-22]
 gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           202-4]
 gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           MV-22]
          Length = 251

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 18/147 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R      +  + +   R    +     +S  A   +   RV       K 
Sbjct: 110 EDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKL 169

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++I+ T     +  K                 +     ++ G E  G++   +  
Sbjct: 170 LKKRGYWIFGTAMEGEDYRKW---------------NANGKTVLVIGNEGKGISPLLLKQ 214

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  ++ P+     SLN S A  ++++
Sbjct: 215 MDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|302528045|ref|ZP_07280387.1| predicted protein [Streptomyces sp. AA4]
 gi|302436940|gb|EFL08756.1| predicted protein [Streptomyces sp. AA4]
          Length = 266

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 15/159 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRV 73
           V++LVD     N G V R         + L        + K+  ++A +     +   R 
Sbjct: 119 VVVLVDVAEPGNAGTVIRVADAAGADAVVLAGDTVDPHNGKSVRAAAGSTFHVPLARARN 178

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              +  A+             R      LA    A    E +  G  V  IFG E  GL 
Sbjct: 179 IPAVLTAL-------------RAAGLRTLAAHGYASASLETVRFGDPVAWIFGNEAHGLP 225

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++  +  +  P+     SLN++ A  + V+     +
Sbjct: 226 EDVLSSVDEAVRIPLYGKAESLNLATAAAVCVYTAAMAA 264


>gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 242

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+T + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 235

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V+IL + Q   N G + R+   F +  + +        +E    +S  A   +D V+
Sbjct: 87  KSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTGAIEYVDIVK 146

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V +N+ EA+           + +     V   +        +        ++ G E  G+
Sbjct: 147 V-TNISEAL----------LKLKKLDYWVYGAEGEGSKDYSKEKYPSRTALVLGSEGNGI 195

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +     + +I  P++    SLN+S A  +++ E +++
Sbjct: 196 RKKVKENCDVLIKIPMHGKINSLNVSVAGGIILSEIVKS 234


>gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
 gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
          Length = 266

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 23/181 (12%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P     Q S+   +++ V  +   N+G + R+          LV       S +   +S 
Sbjct: 104 PSLAAFQPSSNALLLVSVGLEKPGNLGALLRSADAAG-ADAVLVAGGVDLYSPQVIRNST 162

Query: 63  NADCVIDSVRVFSNLKEAIADLHF-----IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
               V+ S+  F+  ++A+ D        I ATT      +  V                
Sbjct: 163 G---VVFSLPTFAAPEQAVLDWLLQHNIPIVATTPHTHQTYWDVDLR------------- 206

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
              V I+ G E  GL+   +  +   +  P+     SLN+S    LM++E +        
Sbjct: 207 -GPVAIVLGTEHQGLSQTWLERAARKVRIPMQGQADSLNVSVTAALMLYEAVRQRQPRPL 265

Query: 178 K 178
            
Sbjct: 266 P 266


>gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
 gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
          Length = 229

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 29/187 (15%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVR 72
           +LV+  +   N+  + R+     + +   V+    PR         S++  +   +  +R
Sbjct: 24  VLVEHVEKPHNLSAILRSCDAVGVLEAHAVSLSGRPRTF------NSTAQGSQRWVP-LR 76

Query: 73  VFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              ++  A+  L      +Y T     N        ++                 + G E
Sbjct: 77  DHPDITAAVHHLKAQGFKLYGT-----NLGVDARDYRDCDFT--------GPCAFVLGAE 123

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           +WGL++   AL +  +  P+  +  SLN+S A   +++E +     +     + +  P  
Sbjct: 124 KWGLSDAATALMDQAVFIPMRGMVQSLNVSVATATLLFEALRQRQAAGRVPHQGEGIPPD 183

Query: 189 KGELLSF 195
             + L F
Sbjct: 184 HYDSLLF 190


>gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
 gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
          Length = 251

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P       S    ++IL   Q   N+G + R         + L+       +EK   S
Sbjct: 90  IYPMKESSIASIGDNIVILDRIQDPGNLGTIIRVSDAAGYKDIVLLKGSVDVYNEKTVRS 149

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  +  + +   ++    E I  +            N+KS         V    I  G  
Sbjct: 150 SMGS--LFNMNFIYMEEDELIKFM---------AEKNYKSTATALREDAVSYTDIIPGSK 198

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             IIFG E  G++   I +S++ +  P+     SLN++ A  +++++  E
Sbjct: 199 NAIIFGNEGQGVSERLIEVSDSKVIIPIYGSAESLNVAVATGIVLYKFRE 248


>gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
 gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
          Length = 297

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 62/184 (33%), Gaps = 33/184 (17%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
            L+       I L   +   N+G + R         + L+       S +   ++  +  
Sbjct: 136 SLKPKGNDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVF 195

Query: 65  ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                       ++  + FS L         +  T  +   +++++              
Sbjct: 196 SVPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------P 233

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ + V ++ G E+ GL +      + +   P      SLN++ A  +M++E    ++  
Sbjct: 234 YANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTL 293

Query: 176 SEKN 179
            E+ 
Sbjct: 294 DERG 297


>gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 272

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 12/153 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R+     +  + +   R    +  A  +S  A   +    +   + +A+ 
Sbjct: 132 EKPGNLGAILRSADAAGIDGVIVCGARLDLYNPNAIRASLGALFTLP--VIGMTVPQAL- 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    A  R +   +LA +    +            II G E  GL+ E +     
Sbjct: 189 ---------AWLRMHQFQMLATRVDGAIDYTTADLRGRTAIILGSEAEGLSREWLGDDIR 239

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            IS P+     SLN+S    ++ +E +      
Sbjct: 240 AISLPMLGTVDSLNLSVTAAILFYEALRQRRAK 272


>gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus
           VCS1703A]
          Length = 242

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 31/168 (18%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G   R      +  + L N      +   R  +  A           
Sbjct: 94  ILVLDSIQDPHNLGACLRTAMAAGVDAVVLPNSCAADITPVVRKIACGA----------- 142

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----------VGIIF 125
              EA+A          R  N  + V   KE  + +       +           + +I 
Sbjct: 143 --AEALAIF--------RVANLKREVEMMKEKGLWVVGGAGEAEKSLFDLDLSGGLVMIV 192

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G+        + + + P+     SLN+S A  +M++E     +
Sbjct: 193 GNEEKGIHYGLRQTCDWLAAIPMAETMESLNVSVACGIMLFEARRQRL 240


>gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 257

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 16/166 (9%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  A   ++IL       N+G + R     N+  + +   R    +     +S  A   I
Sbjct: 105 EQEANPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHI 164

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNVGIIFG 126
              RV +NL + +  L       AR    F + +   P +          +   + ++ G
Sbjct: 165 PIARV-TNLSQILDKLK------ARGFWIFGTDMNGTPSDCW-------NTNGKLALVIG 210

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G++       + +I+ P+N    SLN S A  ++++E   N 
Sbjct: 211 NEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b]
          Length = 249

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62
            L   +K PV+IL+        N+G   R+     +    +V P+D   S        + 
Sbjct: 88  TLLERSKKPVLILILDGITDPHNLGACLRSADATGVD--FVVIPKDKSASITPVVSKVAC 145

Query: 63  NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   I  VRV +NL  A+        +I+                   A  L   +   
Sbjct: 146 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAEHLLYAMDCS 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            N+ ++ G E  GL        + + S P+     SLN+S A  + ++E +       E
Sbjct: 191 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 249


>gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
 gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
          Length = 244

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 17/162 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R+     +  + L   +    +      +  A   I  + V +  
Sbjct: 97  VLDGVTDPHNLGACLRSADAAGVHAVVLPKDKSVGITPVVSKVACGAAETIPVITVTNLA 156

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E      +   T                 A            +  + G E  G+  
Sbjct: 157 RTLEEIQDAGVWCIGTAG--------------EATDTLYDADLNGPIAWVLGAEGDGMRR 202

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 + ++  P+     SLN+S A  + ++E +     S 
Sbjct: 203 LTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQFSK 244


>gi|116334061|ref|YP_795588.1| rRNA methylase (SpoU class) [Lactobacillus brevis ATCC 367]
 gi|116099408|gb|ABJ64557.1| Predicted rRNA methylase (SpoU class) [Lactobacillus brevis ATCC
           367]
          Length = 170

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 23/164 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDS--VRV 73
           I L +P    N G +AR          L L+ P      +     +       D   VR 
Sbjct: 5   IALFEPLFPANTGNIARTCA--GTDTILDLIKPLGFSVDDAHLKRA--GLDYWDKVDVRY 60

Query: 74  FSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             NL    + I+DL  +Y  +   +   +    P               +   +FG+E  
Sbjct: 61  HENLPAFLDTISDLSQLYLVS---KFADQDYTEPDYQVNE--------HDHYFLFGKETT 109

Query: 131 GLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           GL    +   +   I  P +     +LN+S +  ++++E +   
Sbjct: 110 GLPEPFMRQHAEKCIRIPQDDTHIRALNLSNSAAIVIYEVLRQQ 153


>gi|332160630|ref|YP_004297207.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604499|emb|CBY25997.1| hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664860|gb|ADZ41504.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 368

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 12/147 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 231 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 288

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 289 ----------RKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 338

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171
           S        SLN+S A  +++ E    
Sbjct: 339 SIGGTGKVESLNVSVATGILLSEWWRQ 365


>gi|149370475|ref|ZP_01890164.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium
           SCB49]
 gi|149356026|gb|EDM44583.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium
           SCB49]
          Length = 151

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 27/163 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VF 74
           I+LV P++  N G + R         L L+ P     S+     +         +   ++
Sbjct: 5   IVLVCPEIPNNTGNIGRLSLATG-AHLHLIKPFGFEISDSRLKRA--GLDYWKHIELTIY 61

Query: 75  SNLKEAIA---DLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERW 130
            +++E      D + +  ++    +  KSV   P E             ++ ++FG+E  
Sbjct: 62  ESIEEFYKINKDKNIVLLSS----HGDKSVWDIPFED------------DIMLLFGKESS 105

Query: 131 GLTNEEIA-LSNAIISFPVNPLF-PSLNISQAVLLMVWECMEN 171
           GL  E +    + +   P++     S+NI+ AV + V+E +  
Sbjct: 106 GLPAEILKKHPDNLYKIPLHSDHIRSINIANAVSVTVYEGLRQ 148


>gi|302848864|ref|XP_002955963.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
           nagariensis]
 gi|300258689|gb|EFJ42923.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
           nagariensis]
          Length = 312

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 11/156 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  V R         +  +N R     + ++ ++A AD  +D V+++ +  E +A   
Sbjct: 103 GNLAAVCRTADALGYGAVHCIN-RGDVKYKVSQRTAAGADKWLD-VKMWDSTAECLA--- 157

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                  R+           ++AI + E +   +    I G E++G++ E +A ++A   
Sbjct: 158 -----AVRSAGYQIITTHLSQSAITI-EEVDWTRPTAFILGNEKFGVSEEAVAAADACAI 211

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            P+  +  S NIS A  L+++E  +  +     +  
Sbjct: 212 IPMTGMVESFNISVASALIMYEARQQRLRRMGTHAD 247


>gi|294506400|ref|YP_003570458.1| RNA methyltransferase [Salinibacter ruber M8]
 gi|294342728|emb|CBH23506.1| Putative RNA methyltransferase [Salinibacter ruber M8]
          Length = 262

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVR 72
           G V++L   Q   N+G + R    F   Q  +  P   G    K   + A +   +   R
Sbjct: 114 GTVLVLDGIQDPGNVGTLLRTAAWFG-AQAVVAGPGTAGLYGPKVMRAGAGSHWALPLAR 172

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 +A            R R +  ++          +      +   ++ G E  GL
Sbjct: 173 T-----DAPGPFL------DRLRRHGAALYGADLQGTRADAW-GPDRPSALVLGSEAHGL 220

Query: 133 TNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECM 169
           +   +   +  +S P  P  P   SLN++ A  ++++E +
Sbjct: 221 SAAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLYEWL 260


>gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 362

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 22/171 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
              AK  V+ L +     N+G + R+  +F +  + L +P         R++   A+ + 
Sbjct: 209 SAPAKDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDPALLESGAAVRTAEGGAEHIK 268

Query: 69  -----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                D + V    ++A     +   TT+ ++                  +      + +
Sbjct: 269 AINADDFLSVLDTFRKA----GYTIVTTSSHKGTT-------------LAQAKLPAKMVL 311

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + G+ER GL++      +  IS        SLN+S A  +++ +    +  
Sbjct: 312 VLGQERDGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLADWWRQNQA 362


>gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
 gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus
           TPSY]
          Length = 248

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 21/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANA 64
           + +      +++L       N+G   R           ++ P+D      A  +  ++ A
Sbjct: 93  EARGVKNPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVASGA 150

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +    V +    L E      ++  T+                A     ++     V
Sbjct: 151 AETVPYFMVTNLARTLNELKERNIWVIGTSG--------------DADKTLYQVDLKGPV 196

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 197 ALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEALRQR 247


>gi|116670041|ref|YP_830974.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116610150|gb|ABK02874.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 298

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 29/181 (16%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
               + ++    + +L   +   N G V RA        + L        + KA  S+A 
Sbjct: 120 ALEAVLDAGPRLIAVLCQVRDPGNAGTVLRAADAAGADAVVLTASSVDIYNPKAVRSTAG 179

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------ 117
           +   +  V         ++DL    AT  R R     VLA      +  +++        
Sbjct: 180 SLFHLPVVLGVD-----LSDL----ATACRERGIG--VLAADGYGQLDLDQLQDENAARR 228

Query: 118 ------------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                       G+    +FG E  GL++ E+AL++  ++ PV     SLN+  A  + +
Sbjct: 229 LGNPGAESAYDLGRPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNVGTAATVCL 288

Query: 166 W 166
           +
Sbjct: 289 Y 289


>gi|262037359|ref|ZP_06010824.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
 gi|261748616|gb|EEY35990.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
          Length = 259

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 17/149 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R M       L L        + K   ++     + +   ++   +  +  L
Sbjct: 117 PGNLGTIMRTMEAAGFKNLILTKGSVDVYNPKTVRATMGG--IFNLNIIYETPENILKFL 174

Query: 85  ---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               ++  TTA + +             V   +I   +    IFG E  G+++  I  S+
Sbjct: 175 KEKEYLIITTALHED------------AVSYGKIELKKKNAYIFGNEGGGVSDYFIENSD 222

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
                P+     SLN+S AV + +++  E
Sbjct: 223 IKSIIPIYGNIESLNVSIAVGIFLYKMRE 251


>gi|254718366|ref|ZP_05180177.1| tRNA/rRNA methyltransferase (SpoU) [Brucella sp. 83/13]
 gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
 gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
          Length = 297

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 62/184 (33%), Gaps = 33/184 (17%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
            L+       + L   +   N+G V R         + L+       S +   ++  +  
Sbjct: 136 SLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVF 195

Query: 65  ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                       ++  + FS L         +  T  +   +++++              
Sbjct: 196 SVPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------P 233

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ + V ++ G E+ GL +      + +   P      SLN++ A  +M++E    ++  
Sbjct: 234 YANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTL 293

Query: 176 SEKN 179
            E+ 
Sbjct: 294 DERG 297


>gi|256823639|ref|YP_003147602.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
           16069]
 gi|256797178|gb|ACV27834.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
           16069]
          Length = 231

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 71/180 (39%), Gaps = 20/180 (11%)

Query: 1   MTPYAPQ-------LQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGW 52
           M P +P        L ++ +  + + +D      N+  + R      +  +  V P D  
Sbjct: 1   MLPRSPARLQKILTLLSNRQPDLTVFMDQVHKPHNLAAIVRTADAVGIGHVHAVFPEDVK 60

Query: 53  PSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
            +     +S+ +   + + +  SNLK  IA++        + +          + A+   
Sbjct: 61  FTG--HHTSSGSKRWVTTHK-HSNLKSGIAEM--------KAKGMQVLAAHFSDTAVDFR 109

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             I   Q   ++ G E  G+++E   +++  +  P+  +  SLN+S A  L+++E     
Sbjct: 110 -TIDYTQPTCLLVGSELVGVSDEAAEIADQHVIIPMVGMVQSLNVSVATALILYEAQRQR 168


>gi|300863733|ref|ZP_07108664.1| hypothetical protein OSCI_270001 [Oscillatoria sp. PCC 6506]
 gi|300338240|emb|CBN53810.1| hypothetical protein OSCI_270001 [Oscillatoria sp. PCC 6506]
          Length = 54

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDKFSRQSSR 255
           ++    +F R      EV +LRG++  +D   R   +
Sbjct: 1   MEKFRRLFNRAYPSTAEVSMLRGVLRQIDWALRTYPK 37


>gi|283782445|ref|YP_003373200.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283440898|gb|ADB19340.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 177

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 15/145 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+  +AR      LT+  +V    G   +    +   AD +   + V   L   + +L  
Sbjct: 44  NLSNIARTASCCGLTK--IVACGQGKLDK--TVARDGADEL--EIEVHRTLLPVLKEL-- 95

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                 R    F + L     ++ ++E  F  + V ++ G ER GL++EE++L N  +  
Sbjct: 96  ------RKEGWFLAALEQTTDSVNMHEYQFP-RKVALVIGNERHGLSDEELSLMNVCLEI 148

Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
           PV  L  S N++ A  + ++E    
Sbjct: 149 PVWGLPHSYNVANATAMALYEYCRQ 173


>gi|238795639|ref|ZP_04639154.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           mollaretii ATCC 43969]
 gi|238720758|gb|EEQ12559.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           mollaretii ATCC 43969]
          Length = 358

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 220 PHNLGGIMRTCAHFGINGVLLQDPAILESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 277

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 278 ----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 327

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           S        SLN+S A  +++ E    +   
Sbjct: 328 SIGGTGRVESLNVSVATGILLAEWWRQNSAQ 358


>gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 245

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 23/162 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC------VIDSV 71
           +L       N+G   R+     +  + +   R        R  +  A        V +  
Sbjct: 100 VLDGVTDPHNLGACLRSADAAGVHGVIVPKDRSASLGPIVRKVAVGAAESIPLFQVTNLA 159

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R   +L+E    + +I                    A     +      + I  G E  G
Sbjct: 160 RTLRSLQE--RGI-WIVGAAG--------------EATHTVYQSKLTGPLAIAMGAEGKG 202

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           L        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 203 LRRLTREHCDDLISIPMAGAVSSLNVSVATGICLFEAVRQRL 244


>gi|308047831|ref|YP_003911397.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630021|gb|ADN74323.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 235

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 28/170 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82
             N+  + R      + ++  V     +  E  R     A      V+V    ++ +A+ 
Sbjct: 30  PHNLSAMIRTADAIGVPEVHAV-----FLGEDNRLRGGTATGSQQWVKVNRHQSIGDAV- 83

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGLTNEE 136
                    AR R     V+     A  L+E+          +   I+ G+E+ G++ E 
Sbjct: 84  ---------ARMREQGMQVI-----ATNLSEKAVDFRSIDYTKPTAILMGQEKTGISQEA 129

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           +AL++  +  P+  +  SLN+S A  L+++E       +     +  +  
Sbjct: 130 LALADHDVIVPMVGMVQSLNVSVASALLLYEAQRQRQAAGMYGQRRLDEA 179


>gi|262366971|gb|ACY63528.1| tRNA/rRNA methyltransferase [Yersinia pestis D182038]
          Length = 213

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  AK  V+ L +     N+G + R   +F +  + L +P         R++   A+ + 
Sbjct: 58  QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 116

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  +    +             R    +++       V   +      + ++ G+E
Sbjct: 117 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 165

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GLT+      +  +S        SLN+S A  +++ E    +    
Sbjct: 166 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 213


>gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 279

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L   +   N G V R         + L +      + K+  +S  + 
Sbjct: 114 EEILAAKPTLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSL 173

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV 121
             +        ++EA+  L          R+    +LA   A     +        G   
Sbjct: 174 FHLPVAVGVP-VEEAVRGL----------RDAGVRILAADGAGEDDLDDELDAGTMGGPT 222

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +FG E WGL  E  AL++A++  P++    SLN++ A  + ++      
Sbjct: 223 AWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQ 273


>gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 249

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 15/155 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSA-NA 64
            L  + K P+++L       N+G + R+   F    L  +   R   P   A + +A  A
Sbjct: 91  DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V+  VRV +NL  A+ ++             +  +     +   L++ + SG    ++
Sbjct: 149 LEVVPWVRV-TNLARALDEI---------AEAGYWRIGLTGHSEATLSQTLGSG-KTALV 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            G E  GL     A  + +   P++    SLN+S 
Sbjct: 198 LGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
           23834]
 gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
           23834]
          Length = 248

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 22/176 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA 64
           L N  + P++ IL       N+G   R      +    ++ P  R    +      +  A
Sbjct: 89  LDNLTEPPLLLILDGITDPHNLGACLRVADAMGVH--AVIAPKNRSVGLNATVSKVACGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + V +    L+E      +I  T      +      P                V
Sbjct: 147 AETVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLFHYDIP--------------AAV 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             + G E  G+        +A++S P+     SLN+S +  +++ E      + + 
Sbjct: 193 AWVMGNEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRALKAG 248


>gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
           donghaensis MPA1U2]
 gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
           donghaensis MPA1U2]
          Length = 246

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 23/159 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--- 74
           IL + +   N+G + R      +  L +   R    +     +S  A   I+ V V    
Sbjct: 99  ILDELEDPHNLGSIMRTADAIGVHGLIIPKRRAVGLTGVVAKASTGA---IEHVPVVRIN 155

Query: 75  ---SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                + E      +I  T A+   +++ +               +   + +I G E  G
Sbjct: 156 NLSQTVDELKKRGVWIAGTDAKESVDYRRM--------------DAALPLAVIIGSEGKG 201

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++       + +   P+     SLN S A  L+++E   
Sbjct: 202 MSRILREKCDFLYQLPMIGHVTSLNASVAASLLMYEVYR 240


>gi|23465262|ref|NP_695865.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|23325895|gb|AAN24501.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
           NCC2705]
          Length = 169

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 18/166 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F    + L   R    +  A   SA A   +   RV  N
Sbjct: 18  IALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV-N 76

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +A+  L     ++                       + E  F    + ++ G E  GL
Sbjct: 77  LTKALEGLKERGYYVVGLDGGGDKL-------------VGETGFESDPLVVVLGSEGSGL 123

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                   +AI   P++    SLN S A  + ++        ++ +
Sbjct: 124 GRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNARRKAAAE 169


>gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           cristatus ATCC 51100]
 gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           cristatus ATCC 51100]
          Length = 243

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+T + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                    +++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPVHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +++ P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMYEVFRNRV 242


>gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 248

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   +   R
Sbjct: 100 NPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVPIAR 159

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +  A   + Y T                     +    SG  + +I G E 
Sbjct: 160 VTNLSQTLDKLKAKGFWTYGT--------------DMNGTPSHRWNTSG-KLALIIGNEG 204

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 205 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 248


>gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 242

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+T + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|307325425|ref|ZP_07604627.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306888894|gb|EFN19878.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 277

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 7/172 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L + +   N G V R         + L +      + KA  +S  + 
Sbjct: 106 EEILRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDPYNPKAVRASVGSL 165

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        ++ A++ L    A     R         ++    L++R+  G     IF
Sbjct: 166 FHLPVAVGVP-VERAVSGLREAGA-----RVLAADGAGERDLDSELDDRLL-GAPTAWIF 218

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E WGL     AL++ ++  P++    SLN++ A  + ++         + 
Sbjct: 219 GNEAWGLPEATRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAPAG 270


>gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63]
          Length = 260

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 24/154 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---- 78
           Q   N+G + R     N+T + L        S K    S  A   +  V V   +     
Sbjct: 125 QDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMGAVFRLPFV-VSDTISGYLN 183

Query: 79  --EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
               +     + + +A ++      ++P                  +  G E  GL  E 
Sbjct: 184 AHSELESYAAVVSASA-DKITTTPFVSP----------------CIVAVGNEGNGLKEET 226

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           I+     I+ P+     SLN + A  +++WE M+
Sbjct: 227 ISACKHKITIPMEGRAESLNAAVAASIIMWEMMK 260


>gi|225620368|ref|YP_002721625.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225215187|gb|ACN83921.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
          Length = 164

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 30/168 (17%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
             +I L  P++  N G + R      L   L +V+      S K    +       + ++
Sbjct: 11  NIIIALYRPEIPANTGNIGRLC--VGLNIPLHIVSKPSFIISSKEVKRA--GLDYWEHLQ 66

Query: 73  VF-----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +      +   E                +N K ++   +      +      N  ++FGR
Sbjct: 67  LVKHENENTFLEYCN-------------SNNKRIVPITKFGKHRYDEFQYSNNDILLFGR 113

Query: 128 ERWGLTN----EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  GL       ++  S   +  P++    S+N+S    ++ +E   +
Sbjct: 114 ESTGLRESLWENDLENS---VYIPMSDNIRSINVSNTAAIVAYEAYRH 158


>gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133738478|emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas
           arsenicoxydans]
          Length = 265

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 23/179 (12%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           TP   + Q   +   ++L   Q   N G + R+     + Q+          S K   + 
Sbjct: 106 TPELTEPQRLLQS-AVLLDRVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAG 164

Query: 62  ANADCVIDSVRVFSNLK-EAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
             A  +++   +F N+  EA+   AD+  + AT++               A      +  
Sbjct: 165 MGAHFLME---IFENVDLEALIARADIP-VIATSS--------------HAEKRLYDLDL 206

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            Q V  +FG E  G+T   +AL+   I+ P      SLN++ +  +  +E +      S
Sbjct: 207 TQPVAWLFGHEGQGVTEHLLALATHQITIPHLGAIESLNVAASSAVCFFEQVRQITARS 265


>gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104]
 gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104]
          Length = 263

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 13/156 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V      N G + R           L+      P       ++        V    +L
Sbjct: 112 VAVQISEPGNAGTLIRLSDAMGAAG-VLLAGHSVDPYNGKCLRASAGSIFSVPVVAAPDL 170

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNE 135
           +EA+A +          R     +LA      V  +R      +    +FG E  GL +E
Sbjct: 171 REAVAAV----------REAGLQLLATTVDGEVRLDRAGELLAKPTAWLFGPESHGLPSE 220

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             A ++  +  P+     SLN++ A  + +++    
Sbjct: 221 VAAAADHRVRIPMAGGAESLNVASAAAICLYQSARA 256


>gi|113953546|ref|YP_729908.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
 gi|113880897|gb|ABI45855.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
          Length = 229

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 17/172 (9%)

Query: 18  ILVDPQL---GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           +LV+        N+  + R+     + +   V+      S    S++  +   +  +   
Sbjct: 24  VLVE--HVDKPHNLSAILRSCDAVGVLEAHAVS--LSGRSRTYNSTAQGSQRWVP-LHSH 78

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N++EA+         T ++R            A+   +  F+G     + G E+WGL+ 
Sbjct: 79  PNIEEAVK--------TLKDRGFHLYGTNLSVDALDYRDCDFTG-PTAFVLGAEKWGLSE 129

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
               L +  +  P+  +  SLN+S A   +++E +     +       +  P
Sbjct: 130 NATKLMDTDVFIPMRGMVQSLNVSVATATLLFEALRQREAAGLAPSDGEGIP 181


>gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
           Ellin185]
 gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
           Ellin185]
          Length = 324

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+L       V+ L       N+G + R+   F    + +   R    +  A  +SA A 
Sbjct: 164 PELPG--TPLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSAGMTASAWKTSAGAA 221

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             I   +  SNL  A+ +      F+        +    V  P    + L +R      +
Sbjct: 222 ARIPVAQ-ASNLTAALKEFKKAGFFVIGL-----DMDGDVDLP---GLELADR-----PL 267

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++ G E  GL+       + I+S P++    SLN   A  + +++   N  + S +
Sbjct: 268 VVVVGSEGKGLSRLVSETCDQIVSVPMSSAVESLNAGIATSVTLYQVAVNRGLGSTR 324


>gi|227545915|ref|ZP_03975964.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227213549|gb|EEI81398.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 292

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+    ++    LV P  G P   +A   S      I   R+            
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              F  + E  +      A    +R+     L  +  A    E       + +IFG E  
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLALIFGTEGD 253

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL++  I+ ++  +  P++    SLN++ +  +  +
Sbjct: 254 GLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFY 289


>gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 320

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 17/172 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +G +++L +     N+G V R+   F    + +   R    +  A  +SA     +   +
Sbjct: 162 QGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVTAVAWRTSAGTAARLPVAK 221

Query: 73  ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +   LKE   + + +    A     +              +       V I+ G E 
Sbjct: 222 ATNITRTLKEFQQNGYQVVGLDAGGDTTY--------------DSYDGTGPVVIVVGSEG 267

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            GL+       + ++S P      SLN S A  +++ E       +  K  +
Sbjct: 268 KGLSRLVRETCDVLVSVPTTSWVESLNASVAAGVVLSEFSRQRRAAGVKPSE 319


>gi|123443445|ref|YP_001007418.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090406|emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 368

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 12/150 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 231 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 288

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 289 ----------RKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSV 338

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           S        SLN+S A  +++ E    +  
Sbjct: 339 SIGGTGKVESLNVSVATGILLSEWWRQNQA 368


>gi|110597515|ref|ZP_01385801.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340834|gb|EAT59308.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 215

 Score = 56.6 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 75/212 (35%), Gaps = 25/212 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC- 66
           L +      +++ +     N+  + R+     + +L  V+ R    +E+   ++A A   
Sbjct: 14  LLHRQPDLTVVMDNVNKAHNLSAIIRSCDTVGIGELHAVSYRKSIYTEQ--DAAAGASKW 71

Query: 67  -----VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                  +   V+  L +   ++  + A+++    +F+++                    
Sbjct: 72  TTLHLYHEMATVYKKLSD--QNMQILVASSSAGCMDFRNIDYTM--------------PT 115

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            ++ G E  G++   +  ++  I+ P+  +  SLN+S A  L+++E           +  
Sbjct: 116 ALVVGAEWDGISEAALHGADQTIAIPMFGMVESLNVSVATALILFEAQRQRSAKGMYDSL 175

Query: 182 EQNTPATKGEL-LSFLDYLEISLEERGYFRPV 212
           +         L       L   L + G   P 
Sbjct: 176 QMEPGLFHQTLFELAYPRLSRELRQEGTPYPR 207


>gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 265

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 25/162 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRV 73
           + V+     N G V R         + L    V+P +G         ++        V  
Sbjct: 114 VAVEIGEPGNAGTVIRLAAAMGAHGVILGGHSVDPYNGK-----CLRASTGSIFSIPVVT 168

Query: 74  FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             ++  A+  L      + ATT    +  K +    E+A +L      G+    +FG E 
Sbjct: 169 EPDVPAALDALRGAGLQVLATTV---DGEKRL---DESADLL------GRPTAWLFGPES 216

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL ++    ++  +  P++    SLN++ A  + +++  + 
Sbjct: 217 RGLPSDVAGAADHRMRIPMSGGAESLNVASAAAICLYQSAQA 258


>gi|256060292|ref|ZP_05450465.1| tRNA/rRNA methyltransferase (SpoU) [Brucella neotomae 5K33]
 gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
          Length = 297

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + V +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|326334333|ref|ZP_08200547.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693492|gb|EGD35417.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 261

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 25/173 (14%)

Query: 7   QLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           +L    + P+I++ + P+   NIG + R      +  + + NP+    +     SS    
Sbjct: 106 ELTFHKENPLILIAEAPEKPGNIGALLRTADAAGVDAVCIANPKTDLYNPNVIRSSVGTL 165

Query: 66  CVIDSVRVFSNLKEAIADLH------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             +      ++ KE ++ L       +  A +A    +  S                   
Sbjct: 166 FTVPIAT--ASTKEILSFLQKENFTIYCAALSASVPYDSVSYR----------------G 207

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              I+ G E  GL+ + ++ S+  I  P+     S+N+S +  ++++E +   
Sbjct: 208 RTAIVVGTEDVGLSPQWLSASSKNIIIPMRGKIDSMNVSTSAAVLIFEAVRQR 260


>gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 270

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 14/167 (8%)

Query: 3   PYAPQLQNSAKG-PVIILVDP--QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P    L +   G P  +++    +   N G V R         + L +      + K   
Sbjct: 108 PIDRPLADVLAGSPKFVVICTNVRDPGNAGTVIRGADATGADAVILSDASVDLYNPKLVR 167

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           SS  +   +   R  S+++E  A            R    ++ A           +    
Sbjct: 168 SSVGSLWHLPISR-GSSIEEIFAAC----------RAAGLTLHAADGVGETFLPDVDLAT 216

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               + G E WGL  E     + ++  P+     SLN++ A  + ++
Sbjct: 217 PHAWVMGNEAWGLEPEVREQCDDVVRVPIYGHAESLNLAMAATVCLY 263


>gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 249

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+I IL       N G + R     N+T + +   R    +     +S  A   +   
Sbjct: 99  ENPLILILDGLNDPHNFGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHVPIA 158

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV +    L +      +++ T                     ++   SG  + +I G E
Sbjct: 159 RVTNLSQTLDKLKEQGFWVFGT--------------DMNGTPSHKWNTSG-KLALIIGNE 203

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++       + +I+ P+N    SLN S A  ++++E   + I
Sbjct: 204 GKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRHKI 248


>gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 249

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 15/155 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSA-NA 64
            L  + K P+++L       N+G + R+   F    L  +   R   P   A + +A  A
Sbjct: 91  DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V+  VRV +NL  A+ ++             +  +     +   L++ + SG    ++
Sbjct: 149 LEVVPWVRV-TNLARALDEI---------AEAGYWRIGLTGHSEATLSQTLGSG-KTALV 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            G E  GL     A  + +   P++    SLN+S 
Sbjct: 198 LGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|284034068|ref|YP_003383999.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283813361|gb|ADB35200.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 279

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++   P    NIG + R+   F    L +          KA  +S  +   + +VRV  +
Sbjct: 118 VVFDRPTGPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVRASTGSLFALPAVRV-PS 176

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +E +    ++ A   R       V+   E   V        Q   ++ G E  GL+   
Sbjct: 177 QREVME---WVAA--RRAAGVPIVVVGTDEHGAVDVYDFDFTQPTLLLVGNETTGLSAAW 231

Query: 137 IALSNAIISFPVNPL 151
             L++ ++  P+   
Sbjct: 232 KELADELVRIPMTGA 246


>gi|227548138|ref|ZP_03978187.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079800|gb|EEI17763.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 273

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 52/156 (33%), Gaps = 21/156 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR----- 72
           + V+     N G + R         +          S KA  +SA +   +   R     
Sbjct: 122 VCVETNDPGNAGTLIRIADVCGADAVVFAGDTVDPESSKAVRASAGSLFHVPVARERNIS 181

Query: 73  -VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V   LK A        A T    +         + A  +       Q    +FG E  G
Sbjct: 182 DVMGQLKAA----GLSIAATTMGGDVSL------DDAAEVVA-----QPTAWLFGNEAHG 226

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L  E I  ++  +S P+     SLN++ A  + +WE
Sbjct: 227 LPQELIDAADHRVSIPIRGHAESLNLATAAAMCMWE 262


>gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
           105476]
 gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           tribocorum CIP 105476]
          Length = 271

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 6   PQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARS 59
           P LQ+  K       +++L      +N+G + R    F  +   +V+         K+  
Sbjct: 109 PSLQSFLKNLPEKALILVLCGISNHDNMGSIFRNAAAFA-SHGIIVDKTSCDPLYRKSIR 167

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            SA A             + A  D++ I A    + N     L+P  +A     +    +
Sbjct: 168 VSAGA------ALKVPYTQNA--DINDIIA-ALHDENFHLYALSP--SAPHTLRQAHKTK 216

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              +IFG E  GL    +  S A+   P+   F SLN++ A  + +
Sbjct: 217 RTALIFGTEGDGLPPHVLQQSTAL-RIPMTDGFDSLNVATASGIAL 261


>gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 249

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 15/155 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL-RLVNPRDGWPSEKARSSSA-NA 64
            L  + K P+++L       N+G + R+   F    L  +   R   P   A + +A  A
Sbjct: 91  DLPETDKRPLLVLDQVTDPHNVGAILRSAAAF--DALGIITQDRHAPPESGALARAASGA 148

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             V+  VRV +NL  A+ ++             +  +     +   L++ + SG    ++
Sbjct: 149 LEVVPWVRV-TNLARALDEI---------AEAGYWRIGLTGHSEATLSQTLGSG-KTALV 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            G E  GL     A  + +   P++    SLN+S 
Sbjct: 198 LGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter
           sp. 1501(2011)]
          Length = 262

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 26/168 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      +    ++ P+      +      S  A  ++  V   +
Sbjct: 111 VLDQITDAHNLGACLRTAAAMGVD--AVICPKHHSASLTPTVAKVSVGAMEIMP-VIAVT 167

Query: 76  NLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL   I +L     F+Y T               E A  L +    G  V II G E  G
Sbjct: 168 NLARCIENLKQSGVFVYGTAL------------DETAKALPDVDLKG-KVAIIMGSEGEG 214

Query: 132 LTNEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVS 175
           +        + ++  P+    +    SLN+S A  ++++E        
Sbjct: 215 MRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLYEVSRQRHQP 262


>gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera]
          Length = 1306

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 11/160 (6%)

Query: 16   VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +++L   Q   N+G + R+   F    + L++      + KA  +S  A   +    + S
Sbjct: 1141 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLP---IVS 1197

Query: 76   ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                +L+    +            +N K    P            +   + ++ G E  G
Sbjct: 1198 GSWIHLETLKNEFQMKM-IAGHPDSNQK--RKPVSPLSQGLADSLADVPLCLVLGSEGSG 1254

Query: 132  LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            L+ +   L   ++S P+   F SLN+S A  + ++     
Sbjct: 1255 LSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 1293


>gi|225469664|ref|XP_002266337.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 459

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 11/160 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G + R+   F    + L++      + KA  +S  A   +    + S
Sbjct: 303 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLP---IVS 359

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L+    +            +N K    P            +   + ++ G E  G
Sbjct: 360 GSWIHLETLKNEFQMKM-IAGHPDSNQK--RKPVSPLSQGLADSLADVPLCLVLGSEGSG 416

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L+ +   L   ++S P+   F SLN+S A  + ++     
Sbjct: 417 LSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 455


>gi|104773701|ref|YP_618681.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116513698|ref|YP_812604.1| rRNA methylase (SpoU class) [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422782|emb|CAI97421.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093013|gb|ABJ58166.1| Predicted rRNA methylase (SpoU class) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 185

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 24/183 (13%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSA---NADCVIDSV 71
           I+L +P++ +N G +AR     N  L    L+ P      +K    +      +     +
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLD---LIEPLGFRLDDKHLKRAVLDYGGEV---EI 58

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV--LNERIFSGQNVGIIFGRER 129
           R   +L+  +          A   +N +  L  K ++ V    +     ++   +FGRE 
Sbjct: 59  RRHDDLRAFL----------ATLPDNAEMYLISKFSSKVYTDVDYTDESKDYYFVFGRET 108

Query: 130 WGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
            GL    +   ++  +  P++    + N+S +  ++++E +        +          
Sbjct: 109 TGLPETFMRQYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQQGFPHMEKSHHYENDKL 168

Query: 189 KGE 191
           K +
Sbjct: 169 KDD 171


>gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 278

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 21/158 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L      EN+G + R      +  +            +    S      +    +   
Sbjct: 130 VVLEGVNDPENLGAIFRNCAALGVDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLPGT 189

Query: 77  -------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                  L +             R R      L P   A +   R    + V  + G E 
Sbjct: 190 PTTWQRSLDDL------------RERGFRTIALTPAAEAPLS--RAVDAEKVAFVLGAEG 235

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            GLT   +   +   + P+     SLN++ A  +  +E
Sbjct: 236 PGLTEHAMRACDVRAAIPMTDGTDSLNVATAAAVAFYE 273


>gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1]
 gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 255

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R+        L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRSADAAGA--LAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      +I  T               EA + + ++  +G  + +I G E  G+
Sbjct: 159 LARTLEKLQQRGLWIVGTAG-------------EAEVSIYDQDLTGPTI-LIMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++  P+     SLN+S A  + ++E     
Sbjct: 205 RRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 244


>gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
 gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
          Length = 256

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 21/161 (13%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVID 69
             KG  I+L   Q   N+G + R         + L     D +  +  RS   +   +  
Sbjct: 105 PHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDKVLRSMQGSHFHIP- 163

Query: 70  SVRVF-SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              VF +NL+E    + +     A TA +R++    +            +    +V I+ 
Sbjct: 164 ---VFQANLQEYLPILKEKGVQVAVTALHRDSKDYSV------------LQGATDVAIVV 208

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  G++++ I L++ +++ P+     SLN+S A  L+++
Sbjct: 209 GNEGQGVSDDVIDLADVVVTIPIFGKAESLNVSIASALLMY 249


>gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
           16841]
 gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
           16841]
          Length = 246

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 14/159 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           + IL + +   N+G + R   N      + +   R    +     +SA A       +V 
Sbjct: 100 IFILDNIEDPHNLGAIIRT-ANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKV- 157

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +NL  AI +L                V A       + +    G  +G++ G E  G++ 
Sbjct: 158 TNLTAAIKEL---------KEKGLWFVCA-DMGGTEMYKLDLKG-PIGLVIGNEGEGVSK 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                 + I S P+     SLN S A  ++ +E +   +
Sbjct: 207 LVKENCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQRL 245


>gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2]
 gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
 gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
          Length = 248

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79
             N+G   R      + Q  +V P+D     +   R  +  A  VI  V V +    L++
Sbjct: 108 PHNLGACLRTADAAGV-QAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++  T                 A     ++       ++ G E  G+       
Sbjct: 166 LQQRGLWVVGTAG--------------EADKTLYQLDLKGPTVLVMGAEGKGMRRLTREH 211

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +   P+     SLN+S A  + ++E +   
Sbjct: 212 CDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244


>gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
 gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
 gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
 gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
 gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
          Length = 248

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79
             N+G   R      + Q  +V P+D     +   R  +  A  VI  V V +    L++
Sbjct: 108 PHNLGACLRTADAAGV-QAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++  T                 A     ++       ++ G E  G+       
Sbjct: 166 LQQRGLWVVGTAG--------------EADKTLYQLDLKGPTVLVMGAEGKGMRRLTREH 211

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +   P+     SLN+S A  + ++E +   
Sbjct: 212 CDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244


>gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 15/172 (8%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S    V +L + +   N G V R         + L +      + KA  +S  +   +  
Sbjct: 118 SRPTLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSHFHLPV 177

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFG 126
                 ++ A+  L          R     +LA   A     +        G     IFG
Sbjct: 178 AVGVP-VERAVQGL----------REAGVRILAADGAGEHDLDAELDAGTMGGPTAWIFG 226

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            E WGL  E  AL++A++  P++    SLN++ A  + ++           +
Sbjct: 227 NEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYASARAQRTGGAR 278


>gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 233

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+T + +   R    +     +S  A   I   R
Sbjct: 85  NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 144

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 145 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 189

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 190 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 233


>gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
 gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
          Length = 247

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 23/151 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSS-SANADCVIDSVR 72
           P+++L       N+G + R+   F    L +V   R   P     +  ++ A   +  +R
Sbjct: 102 PLVVLDQVTDPHNVGAILRSAAAF--DALGIVTQDRHAPPESGTVARSASGALETVPWIR 159

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V  NL  A+ ++     +    T                A     +    Q + I+ G E
Sbjct: 160 VV-NLARALEEIAEAGFWRIGLTG--------------HANQTLAQAMGTQRICIVLGAE 204

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
             G+     A  + +   P++P   SLN+S 
Sbjct: 205 GEGMRQNTEAHCDELAKLPISPKVESLNVSN 235


>gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo]
 gi|254713278|ref|ZP_05175089.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M644/93/1]
 gi|254716369|ref|ZP_05178180.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M13/05/1]
 gi|256158847|ref|ZP_05456704.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M490/95/1]
 gi|256254228|ref|ZP_05459764.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
 gi|260169726|ref|ZP_05756537.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
 gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo]
 gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
          Length = 297

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + V +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330]
 gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|254705329|ref|ZP_05167157.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 3 str. 686]
 gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
 gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 297

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + V +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|238787892|ref|ZP_04631688.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           frederiksenii ATCC 33641]
 gi|238723840|gb|EEQ15484.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           frederiksenii ATCC 33641]
          Length = 363

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 225 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 282

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 283 ----------RKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 332

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           S        SLN+S A  +++ E    +   
Sbjct: 333 SIGGTGRVESLNVSVATGILLSEWWRQNSAQ 363


>gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
           700633]
 gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
           700633]
          Length = 252

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA-- 80
           Q   N+G + R         + L        ++K   S   +   +       NL +   
Sbjct: 116 QDPGNLGTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQFHV--AIYHENLMDVYG 173

Query: 81  -IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            + +     A TA +R+                + +    +V I+ G E  G+ +E I  
Sbjct: 174 KLKENDIPIAVTALHRD------------AKDFKWLTGRDSVAIVVGNEGNGVRDELIES 221

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           ++ II  P+     SLN++ A  +++++  
Sbjct: 222 ADFIIQIPMFGQAESLNVAIATGVLMYQTR 251


>gi|229496035|ref|ZP_04389759.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317127|gb|EEN83036.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 182

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 12/155 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--CVIDSVRVFSNLKEAIADL 84
           N+G + R    F L  L L       P      ++  A+     +     S L EA+  L
Sbjct: 37  NVGSLFRTADAFRLEGLILCGITGLPPHPMIHKTALGAELSVAWEHAE--STL-EAVEQL 93

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                          ++    ++       +   + V ++ G E  G+ ++ IA  +  I
Sbjct: 94  R-------SKGYKIWALEQATDSLCPEESPLTPPERVALVVGNEVHGVADDVIACVDRCI 146

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             P      SLN+S +  + ++  +   + +    
Sbjct: 147 EIPQYGTKHSLNVSVSAGIAIYSIVAEYLRTMPNP 181


>gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
 gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
          Length = 249

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 11/167 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L+ + +G V++L   Q   N+G + R+        + +   R    +  A  SSA A  
Sbjct: 89  ELKGNQEGLVLVLDSVQDPHNLGALIRSAACAGAHAVVIPKDRAAGVTAVAEKSSAGATE 148

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            I   +V +N+ +A+  L          +  F    A   A   L ++ FSG  V ++ G
Sbjct: 149 TISVAQV-TNISQALESL---------KKAGFWIYGADGSARSTLYQQDFSG-PVALVIG 197

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            E  G+        +A++S P+     SLN S A  +M++E +   +
Sbjct: 198 GEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLFEVVRQRM 244


>gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           oremlandii OhILAs]
          Length = 250

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 23/161 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R      +  + +   R    +     SSA A   +   +V SN+
Sbjct: 100 ILDEIMDPHNLGSMMRTADAVGVDGIIIPKRRSVGLTSTVAKSSAGAIEYVPVAKV-SNI 158

Query: 78  K---EAIADLHFIYA---TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               + I D+    A    +    +    +  P                + ++ G E  G
Sbjct: 159 AQTIDKIKDMGIWVAGADMSGSKEHYNMDLKGP----------------LALVIGNEGEG 202

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++       + +I  P+     SLN S A  ++++E     
Sbjct: 203 ISRLIKEKCDFLIKLPMVGQVSSLNASVAAAVLMYEVFRQR 243


>gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
           CNPT3]
 gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
           CNPT3]
          Length = 246

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 8   LQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
           L+N  + P ++IL       N+G   R+     +  + +  P+D     +   R  +  A
Sbjct: 91  LENLTEAPFLLILDGVTDPHNLGACLRSADAAGVHAVII--PKDNSASLTPVVRKVACGA 148

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  ++V +     +A                       EA   + +  FSG  + I 
Sbjct: 149 AESVALIQVTN-----LARCMRSL-----QDKGIWIYGTAGEATGSVYDCQFSGG-IAIA 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL        +A+I  P+     SLN+S A  + ++E +   
Sbjct: 198 MGAEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLFEVVRQR 245


>gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9211]
          Length = 413

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 19/173 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I L       N+G + R+        L L   R    +      +A A       RV + 
Sbjct: 243 IALDGLTDPHNVGAIIRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHFPVARVVNL 302

Query: 76  --NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +L E + D  + +                       +   +     + ++ G E  GL
Sbjct: 303 NRSLIE-LKDAGYSVIGLAG--------------DGDFVLNEVDLLGPLVLVIGSEDKGL 347

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           +       + ++  P+  +  SLN S A  + ++E      +           
Sbjct: 348 SVLTRRNCDQLVRVPLRGVTSSLNASVAASISLYEIASKGWMKGLSGQAPSPK 400


>gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
 gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
          Length = 361

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 16/165 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
             Q++A G V+ L       N+G V R+   F    + +   R    +  A  +SA A  
Sbjct: 199 ATQSAAPGLVVALDGVTDPRNLGAVVRSAAAFGANGVVVPERRAAGMTAAAWKTSAGAAA 258

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   R  +    L+       F+    A             +  + +++   +   + +
Sbjct: 259 RLPVARAVNLTRTLRSFAESGLFVVGLAA-------------DGEVDIDDLQVAADPLVL 305

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + G E  GL+       +  +  P+     SLN   A  + + E 
Sbjct: 306 VVGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIALAEI 350


>gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 235

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V+IL + Q   N G + R+   F +  + +        +E    +S  A   +D V+
Sbjct: 87  KSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTGAIEYVDIVK 146

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +N+ +AI+ L     ++Y        ++     P                  ++ G E
Sbjct: 147 V-TNISDAISKLKKLDYWVYGAEGEGSKDYSQEKYP--------------SRTALVLGSE 191

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+  +     + +I  P+     SLN+S A  +++ E +++
Sbjct: 192 GNGIRKKVKESCDVLIKIPMYGKINSLNVSVAGGIILSEIVKS 234


>gi|89889558|ref|ZP_01201069.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium
           BBFL7]
 gi|89517831|gb|EAS20487.1| tRNA/rRNA  methyltransferase, SpoU family [Flavobacteria bacterium
           BBFL7]
          Length = 175

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 62/161 (38%), Gaps = 9/161 (5%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++     +I+L + +   NIG V R+   + + ++ L       P +  R ++  A   +
Sbjct: 19  ESDKTPLIIVLDNVRSLNNIGSVFRSADAYRVEKIYLCGITAQPPHKDIRKTALGATETV 78

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                   + + I +L+    TT              E ++ L     S + V ++ G E
Sbjct: 79  AWEYRDHTI-DIIKELNEQGVTTCAIEQA--------EDSVSLRGFKPSTKKVAVVMGNE 129

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             G+  E +   + +I         SLNIS    +++++  
Sbjct: 130 VKGVQQEVVDSCDTVIELEQYGTKHSLNISVCTGIVIYDLF 170


>gi|33596189|ref|NP_883832.1| putative RNA methyltransferase [Bordetella parapertussis 12822]
 gi|33573192|emb|CAE36844.1| putative RNA methyltransferase [Bordetella parapertussis]
          Length = 274

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 23/172 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L        ++    Q   N+G + R      + ++ L        S K   S   A 
Sbjct: 120 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 179

Query: 66  CVIDSVRVFSNLK-EAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +    +  +L  EA+    D+  +  T AR+ + + + L  +                
Sbjct: 180 FALH---IHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPAR---------------C 221

Query: 122 GIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENS 172
             +FG E  G+    +  +   +  P  +    SLN+  A  + ++E     
Sbjct: 222 AWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 273


>gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
           40736]
 gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
           40736]
          Length = 311

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G V R++  F      +V      P  +A   +A A         
Sbjct: 162 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKTSAGAAA 214

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + +  A    +   A  A  +     V    +    L +    G  V I+ G E  GL+
Sbjct: 215 RTPVARA---TNLTRALEAYKKAGIVVVGLAADGEAELGDLEALGGPVAIVVGSEGKGLS 271

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  +  +  P+     SLN   A  ++++E     
Sbjct: 272 RLVGETCDYRVRIPMPGGTESLNAGVAAGIVLYEAARRR 310


>gi|206560438|ref|YP_002231202.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
 gi|198036479|emb|CAR52376.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
          Length = 260

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 17/171 (9%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P L        ++L   Q   N+G + R+     +       P   +  S K   S 
Sbjct: 103 PAHP-LPARVTETSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSG 160

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A  ++    +  ++             + R       +                   V
Sbjct: 161 MGAHFLLS---IHEDVD--------AGELSGR---LAVPIALTDSHGAQAVYDCDLSAPV 206

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 207 AWVFGNEGAGVSAFWCDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
 gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
          Length = 244

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 51/153 (33%), Gaps = 17/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79
           +   N+G + R      +  + +   R    +      S  A   +   +V +    L++
Sbjct: 103 EDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLED 162

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++      + +N +          ++           I+ G E +G++      
Sbjct: 163 LKKHSFWVVGC---DLDNAQDYRQIDYNMPLV-----------IVIGSEGFGISRLVKKT 208

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  +  P+     SLN S A  +++++   + 
Sbjct: 209 CDFNVVLPMMGHVTSLNASVATAVILYQVYNSR 241


>gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
 gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
          Length = 323

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 30/171 (17%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N     ++ L       N+G + R++  F    + +       P  +A   +A A     
Sbjct: 165 NGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVVI-------PERRAAGMTAGAWKTSA 217

Query: 70  S------VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                  V   +NL  A+ D       +    A             E    + +    G 
Sbjct: 218 GTAARTPVSRVTNLTRALQDYKKAGITVVGLAA-------------EGTHEVQDLDALGG 264

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            V I+ G E  GL        + ++  P+     SLN   A  ++++E   
Sbjct: 265 PVVIVVGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLYEAAR 315


>gi|239930134|ref|ZP_04687087.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 249

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 20/168 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +     PV++L  P+   N G V R    F  T +      D W     R  +      +
Sbjct: 102 RTPRTAPVVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 156

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                   L                        +   +             +  + FG E
Sbjct: 157 HFATAVERL---------------TAGELPPGPVFALDPEGEDIRGTKLPDDALLAFGSE 201

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           R GL+ E  A ++ +I+ P+  +  S N++ +V + ++         +
Sbjct: 202 RSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYHWSATGGAPA 249


>gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 292

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+    ++    LV P  G P   +A   S      I   R+            
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              F  + E  +      A    +R+     L  +  A    E       + +IFG E  
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPD--EDPTHIDKLALIFGTEGD 253

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL++  IA ++  +  P++    SLN++ +  +  +
Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289


>gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 280

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 19/182 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P +Q+      + L +    +N G + R+      T + +        S     +SA A 
Sbjct: 114 PSIQDGRSPVWVALDEVIDPQNFGAILRSCHYLGATGVVVCAKNSAPLSGVVSKASAGAL 173

Query: 66  CVIDSVRVFSN----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            V++ ++   N    L  ++ +       ++  R      L P             G   
Sbjct: 174 EVME-IQSCRNMMKFLDTSVQNGWRAVGASSEPRALPIQELEP-------------GLPT 219

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            ++ G E  GL          ++S   +    SLN+S A  +++ + +  S   SE  V 
Sbjct: 220 ILVLGNEGRGLRTNVKRSCTELVSIKAD-AVDSLNVSVAAGILLHDLLSRSTQQSESAVS 278

Query: 182 EQ 183
            Q
Sbjct: 279 AQ 280


>gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 255

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 18/179 (10%)

Query: 1   MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +T     ++++ + P+  IL       N G   R      +    +   R    +     
Sbjct: 84  ITEVVEDVESTHEKPLFLILDGVTDPHNFGACLRVADGAGVDAAVIPKDRSASINATVSK 143

Query: 60  SSANADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            S  A  V+  + V     ++KE      ++  T               + A      I 
Sbjct: 144 VSGGAAEVMPVITVTNLVRSMKEMQEAGVWLIGT--------------DDEATKSIYDID 189

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              ++ I+ G E  G+        + ++  P+  +  SLN+S A  + ++E +   +  
Sbjct: 190 LTGSIAIVMGAEGEGMRRLTKETCDELVRIPMQGVVSSLNVSVASGVCLYEVLRQRLSK 248


>gi|291438474|ref|ZP_06577864.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341369|gb|EFE68325.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 252

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 20/168 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +     PV++L  P+   N G V R    F  T +      D W     R  +      +
Sbjct: 105 RTPRTAPVVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 159

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                   L                        +   +             +  + FG E
Sbjct: 160 HFATAVERL---------------TAGELPPGPVFALDPEGEDIRGTKLPDDALLAFGSE 204

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           R GL+ E  A ++ +I+ P+  +  S N++ +V + ++         +
Sbjct: 205 RSGLSPELRARADHLIALPMRSMVSSYNLATSVAMTLYHWSATGGAPA 252


>gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 285

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 9/166 (5%)

Query: 8   LQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L+    GP   ++L +     N+G + R+     +  + + +        ++   S    
Sbjct: 120 LEAVGSGPARIVVLENLVDHTNVGAIFRSAAALGVDAVFVTSDCADPLYRRSVRVSMGTV 179

Query: 66  CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             +   R+  +    + +++  +   T A    +    L       V + +      + I
Sbjct: 180 FQVPWTRIDGWPRSAKMLSECGYT--TAALALTDDAVALDAFSRLEVCSAK---DSKIAI 234

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           I G E  GL +  IA  +  +  P+     SLN++ A+ +  WE  
Sbjct: 235 ILGAEGDGLRDSTIAAVDHSVVIPMAGDVDSLNVAAAMAVACWELR 280


>gi|167945644|ref|ZP_02532718.1| RNA methyltransferase TrmH, group 2 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 87

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 16/89 (17%)

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS--NAI 143
            ++A T R R N+              E  F   +  ++FG E  GL    +        
Sbjct: 7   RLFACTTRARRNY-------------AEAAFEAGD-ALLFGPETRGLPQALLDSLPEQQQ 52

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  P+ P   SLN+S AV L+++E     
Sbjct: 53  LRIPMRPEVRSLNLSNAVALILYEAWRQQ 81


>gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 248

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 6   PQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P L      P++ +L       N+G   R      +  + +   R  + +   +  ++ A
Sbjct: 87  PALLAQHTAPLLLVLDGVTDPHNLGACLRCADAAGVNAIIIPRNRSAYLNATVKKVASGA 146

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQN 120
              +  ++V +    L+        I  TT              EA   + +  F     
Sbjct: 147 AETMPLIQVTNLARTLRLLQEHNILILGTTI-------------EADSHIYQTSFKFTSP 193

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  G+        N ++  P+     SLN+S AV + ++E +   + S
Sbjct: 194 IALVVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFLFEVVRQRLSS 248


>gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533]
 gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533]
 gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 251

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 18/147 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R      +  + +   R    +     +S  A   +   RV       K 
Sbjct: 110 EDPHNLGSILRTCDATGVDAVIIPKRRASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKM 169

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++I+ T     +  K                 +     ++ G E  G++   +  
Sbjct: 170 LKKRGYWIFGTAMEGEDYRKW---------------NAKGKTVLVIGNEGKGISPLLLKQ 214

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  ++ P+     SLN S A  ++++
Sbjct: 215 MDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum]
          Length = 487

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 19/167 (11%)

Query: 5   APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
              +      P+++ L +    +N G + R    F ++ +   +      +  A  +SA 
Sbjct: 326 KEAMDKLKSPPLVVALDEIWDPQNTGAIIRTCHFFGVSGVVTTDKHSSPLTPVASKASAG 385

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNV 121
           A   ++   ++  +         +Y     ++ N   ++  +  E +  LN  +   Q  
Sbjct: 386 A---LEDTPIYKTMS--------MYGFLKGSKENGWKIMGTSLGEDSKPLN-SVKLTQPT 433

Query: 122 GIIFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLM 164
            ++ G E +G+++  I   +  +  P     NP   SLN S +  ++
Sbjct: 434 ILVIGNEGFGVSDNIIQECDETVKIPVSNKANPKLESLNASVSAGIV 480


>gi|319779560|ref|YP_004130473.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
 gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
          Length = 259

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 24/168 (14%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S +  +++L   Q   N+G + R      ++ + L        S K   S+  +   +  
Sbjct: 105 SMQNTIVLLDSIQDPGNLGTLLRTCVAVGISDVALNKGCSSAWSSKVLRSAQGSHAFLKI 164

Query: 71  VRVFS--NLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNER----IFSGQNVGI 123
                   L E + A  + I AT                 A+ L+ +    +   + +  
Sbjct: 165 YHHVDLIGLIEILQAGGYEIIAT-----------------ALDLSSKNLFELNLNKKIAW 207

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           IFG E  G+++E ++L       P+N    SLN+  A  + ++E    
Sbjct: 208 IFGNEGNGVSSEILSLGLEKCIIPINQNIESLNVGVAASICLYEQYRQ 255


>gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 313

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 12/160 (7%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G V R++  F      LV      P  +A   +A A     S   
Sbjct: 164 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVLV------PERRAAGMTAGAWKT--SAGT 214

Query: 74  FSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +     +A   +   A  A  +     V    +    + +    G  V I+ G E  GL
Sbjct: 215 AARTP--VARCTNLTRALEAYRKQGIVVVGLAADGEHEIGDLEALGGPVAIVVGSEGKGL 272

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       +  +  P+     SLN   A  ++++E     
Sbjct: 273 SRLVGETCDYRVRIPMPGGAESLNAGVAAGIVLYEAARRR 312


>gi|323360047|ref|YP_004226443.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323276418|dbj|BAJ76563.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 268

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG   R+          LV PR   P   ++   S      +   R+     EA     
Sbjct: 130 NIGAAFRSAAALG-ADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRL-PEWSEAKP--- 184

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
                         + LA  + A+ L+     G + V ++ G E  GL+   +A ++ ++
Sbjct: 185 -----LLHAAGLHLAALALSDDAVTLDAFSAVGHERVALLMGAEGDGLSRGALAAADTVV 239

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
           + P+     SLN++ A  + +WE     
Sbjct: 240 TIPMAGGVDSLNVAAASAVALWELGRGR 267


>gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 248

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   +   R
Sbjct: 100 NPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVPIAR 159

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +  A   + + T                     +    SG  + +I G E 
Sbjct: 160 VTNLSQTLDKLKAKGFWTFGT--------------DMNGTPSHRWNTSG-KLALIIGNEG 204

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 205 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 248


>gi|317124938|ref|YP_004099050.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
 gi|315589026|gb|ADU48323.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
          Length = 251

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 11/172 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M P    + ++    V++L       N+GM+ R+     +    +V PR G  S      
Sbjct: 89  MLPLEVAIDHADLRTVLVLDGITTPANVGMILRSATAAGIDG--IVVPRRGVASIDPLVV 146

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A+A  +     +             + A TA     F  V    +    L       + 
Sbjct: 147 KASAG-IAFRAPILKTF-------TAVEAVTALKEAGFHIVGLDADGDDDLFTAHLR-ER 197

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V ++ G E  G   E   L +  +S P+     SLN+S A  ++ +E +  +
Sbjct: 198 VAVVLGSETAGHGPEVARLVDTWVSIPMTGGVESLNVSAAAAVVCFELVRRA 249


>gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 332

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 16/147 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID---SVRVFSNLKEAI 81
             N+G + R+   F    L L   R    +  A  +SA A   I    +  + + LKE  
Sbjct: 192 PRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTSAGAAARIPVALAANLTATLKEFK 251

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               F+    A + +           A+ L +R      V I+ G E  GL+       +
Sbjct: 252 KQGVFVLGL-AGDGDVSLP-------ALELADR-----PVVIVVGSEGKGLSRLVTETCD 298

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++S P++    SLN   A  + +++ 
Sbjct: 299 QVVSIPISTATESLNAGIAASVALYQV 325


>gi|325474590|gb|EGC77776.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 263

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 19/148 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIAD 83
           N+G + R+   F +  + L    +    +  A   +      ++ V++F  S+    +  
Sbjct: 121 NLGAIIRSAAFFGIENIVLTKEDKQASITTSAYRVAQGG---MEFVKIFKVSSTAWFLRQ 177

Query: 84  LH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                    T  R  +              L   I   +   I+ G E  G++ E   L 
Sbjct: 178 CRGRLTCIGTDLRAHHEI----------ADLGRLIEKDEACVIVLGNEERGISEEAKKLC 227

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
             +I    +    SLN++QA  L     
Sbjct: 228 AHLIKIKGSGNVESLNVAQAATLFCHSL 255


>gi|269115011|ref|YP_003302774.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322636|emb|CAX37371.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 241

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N     +I L   Q   NIG + R   +F      +V   D + +EK   SS  A   ++
Sbjct: 91  NIKANKIIALNKLQDPGNIGTIFRLAKSFGFDS-VIVENIDIY-NEKIIRSSQGAMFSLN 148

Query: 70  SVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            ++       L     D   +Y+TT                +I LN+  F  + + I+ G
Sbjct: 149 IIKTNDLSKELSAFKKDDFLVYSTTLNK------------NSIKLNDIDFRNKKIVIVLG 196

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            E  G+  + I LS+  +  P+   F SLN++    ++
Sbjct: 197 NEGNGIDEKIIDLSDFNVYVPI--EFESLNVACCGAII 232


>gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
 gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
          Length = 278

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L      ENIG + R      +  +   N        +    S      +    +  
Sbjct: 123 VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAG 182

Query: 76  N-------LKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                   L E A A  H +              L P   A+ L + +   + V ++ G 
Sbjct: 183 TYTTWQRSLTELADAGFHLV-------------SLTPDPEAVHLEDALAGREKVALLVGA 229

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E  GLT   +  ++     P+ P   SLN++ +  +  +E
Sbjct: 230 EGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYE 269


>gi|189500156|ref|YP_001959626.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           BS1]
 gi|189495597|gb|ACE04145.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           BS1]
          Length = 216

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R+     +  +  V+      +   R  +A       ++ +   ++ A A  
Sbjct: 31  PHNLSAIIRSCDAVGIETVHAVSEEKIIKN---RQRAARGSSKWVNLELHETIEHAFA-C 86

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAI 143
                     R     VL        ++ R         I+ G E +G +   ++ ++  
Sbjct: 87  ---------LRAQGMQVLVAHHHEESVDFRTLDYTLPTAIVMGAELFGPSATTLSGADHC 137

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           I  P+  +  SLN+S A  ++++E       +   N  
Sbjct: 138 IHIPMQGMVESLNVSVAAAVILFEAQRQRTEAGLYNRP 175


>gi|308163268|gb|EFO65618.1| TAR RNA loop binding protein, putative [Giardia lamblia P15]
          Length = 209

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAIADLH 85
           N+G +AR    F L  L L            ++ S  AD  ++   V    L + IA+  
Sbjct: 67  NLGGLARTAEAFGLDSLVL-GSASFALDPSFKAMSMTADMWLNIEEVRPYKLAQWIAE-- 123

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                  + +  +  V   + +  V  +     Q   ++ G ER G   E ++L +  + 
Sbjct: 124 -------KRKEGYSVVCLEQSSKSVYLQDAKLPQKTVLVLGNERRGCPEEILSLCDMTVE 176

Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
                   SLN+  +  + VW+ 
Sbjct: 177 IQQLGNIRSLNVHVSCAIFVWKW 199


>gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
 gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
          Length = 267

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 16/173 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSAN 63
              + N+ K   + L D Q   N+G + R      + +  +VN R     S     +SA 
Sbjct: 97  KTAMANNRKALWLGLNDVQDPMNLGALIRTAALMGVNR-VVVNSRKTARLSAVVSKASAG 155

Query: 64  ADCV--IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A  V  I +V+  S   + + +  + I  T              +  A+       +G+ 
Sbjct: 156 AMEVYPIYAVKNLSKYLDYLVENDWNIIGTVGHKE-------VNQYQAMSCQNFNHNGKP 208

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECM 169
             ++ G E +G++       N+ ++ P +    P   SLN+S A  ++++   
Sbjct: 209 TILMLGNEGFGISASIKEKCNSFLTIPTSSSCPPDIDSLNVSVAAGILLYSLR 261


>gi|114769930|ref|ZP_01447540.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255]
 gi|114549635|gb|EAU52517.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255]
          Length = 147

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P +  N+G + R    F ++ L ++ P     S K+   SA     +D   +   ++  
Sbjct: 7   QPDIAPNLGSMIRLCACFGVS-LDIIEPCGFPLSLKSLRRSA-----MDYADITDMVR-- 58

Query: 81  IADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
               H  + T   NR   +  +L  K  AI+ + +  S     ++ GRE  G+ NE    
Sbjct: 59  ----HDSWETFQANREPGRLILLTTKADAILWDFKFKS--TDTLVMGRESAGVPNEVHNA 112

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ I  P+     SLN++    + + E ++ 
Sbjct: 113 CDSHIKLPMYGKARSLNVAMTAGMALSEALKQ 144


>gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 278

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 27/167 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF- 74
           ++L +     NIG + R+     +    LV+     P   ++   S      I    +  
Sbjct: 124 VVLENITDSTNIGAIFRSAAALGMDG-VLVSSSCCDPLYRRSVRVSMGTVFQIPWTWLHG 182

Query: 75  ----------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                     + L+  +       A T  + +    VL                + + I+
Sbjct: 183 DAFQWPQPGIATLRS-LGFSTAAMALTDNSISIEDPVL-------------ADAEKLAIV 228

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  GL  E IA  +     P+     SLN++ A  ++ W+    
Sbjct: 229 LGSEGNGLCEETIAHCDYTARIPMYHGVDSLNVAAAGAVIFWQLRAR 275


>gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 248

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 24/171 (14%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q      ++IL       N G + R      +  + +   R    +     +S  A   +
Sbjct: 96  QQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHV 155

Query: 69  DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              RV +NL +A+  L     +++ T  T      +                  +   + 
Sbjct: 156 PIARV-TNLSQALDQLKANGFWVFGTDVTGTPSYKW-----------------NTSGKLA 197

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +I G E  G++       + +I+ P+     SLN S A  ++++E   N +
Sbjct: 198 LIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRNKL 248


>gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
 gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
          Length = 260

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 18/169 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
             L        ++L   Q   N+G + R+     +       P   +  S K   S   A
Sbjct: 105 QPLPERVTHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMGA 163

Query: 65  DCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             ++    +  +++ +A+A         AR       V                   V  
Sbjct: 164 HFLLS---IHEDVEPDALA---------AR---LDVPVALTDSHGAQAVFDCDLAGPVAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 209 VFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|171920658|ref|ZP_02695161.2| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|185179064|ref|ZP_02555388.2| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024288|ref|ZP_02570194.2| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518663|ref|ZP_02557090.2| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524453|ref|ZP_02558302.2| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195867597|ref|ZP_03079599.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273695|ref|ZP_03206230.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554398|ref|YP_002284668.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550819|ref|ZP_03771768.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551032|ref|ZP_03771978.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903391|gb|EDT49680.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184209056|gb|EDU06099.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018961|gb|EDU57001.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997773|gb|EDU66870.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659660|gb|EDX53040.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660654|gb|EDX53909.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198249723|gb|EDY74504.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541899|gb|ACI60128.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225378847|gb|EEH01212.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379973|gb|EEH02335.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 172

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 30/169 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLT-QLRLVNP------RDGWPSEKARSSSANADCVID 69
           I+L +P++  N G +AR          L L+ P      +  +  +  R+S+ +    +D
Sbjct: 4   IVLFEPEIILNTGNIARMC--VGFNANLHLIRPYGFILDKARFDKDFVRASANH----LD 57

Query: 70  SVRVF--SNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +++F   +  E IA  + I    Y  T   R   K+    K           + ++V +
Sbjct: 58  ELKLFEYDDFYEFIAKNNIIENQIYFFT---RYGTKAPCDYKY-------ANLNKEDVYL 107

Query: 124 IFGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG+E  G+ ++ +       I  P +    SLNI+ +V + ++E +  
Sbjct: 108 VFGKESTGIDHDILRKYPQNWIRIPTSINLRSLNIANSVAMGIYEVLRQ 156


>gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
 gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
          Length = 248

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79
             N+G   R      +  L ++ P+D     +   R  +  A  VI  V V +    L++
Sbjct: 108 PHNLGACLRTADAAGV--LAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++  T                 A     ++       ++ G E  G+       
Sbjct: 166 LQQRGLWVVGTAG--------------EADKTLYQLDLKGPTVLVMGAEGKGMRRLTREH 211

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +   P+     SLN+S A  + ++E +   
Sbjct: 212 CDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244


>gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana]
 gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana]
          Length = 400

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 16/161 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   Q   N+G + R+   FN     L+       ++KA  +S  A   +    + S
Sbjct: 246 VLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLP---IVS 302

Query: 76  ------NLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRE 128
                  L E    +  +    A      K V     E A  L E+      + +I G E
Sbjct: 303 GNWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEK-----PLCLILGSE 357

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             GL+ +   +   ++S P+   F SLN+S A  + ++   
Sbjct: 358 GNGLSEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYMLQ 397


>gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5]
 gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5]
          Length = 240

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 14/158 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           I++      +N+G + R       +  L +   R    +E    +S+ A   +   +V S
Sbjct: 96  IVIDHITDPQNVGNLLRTCEVLGGVGAL-ISKDRTSPINETVVKASSGAVFHLKISKV-S 153

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L   + +   +              +   E        +     V ++ G E  G++  
Sbjct: 154 SLSRELKNFQKMGG-----------WVFAVEKGGKDIREVDIPLPVALVLGSEDKGVSKS 202

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            + +S+ I++ P+     SLN+  A  + +WE  +  +
Sbjct: 203 VLDISDQIVTIPMKGKVTSLNVGSAGAIAMWETAKKIL 240


>gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana]
 gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana]
 gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 352

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 16/161 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   Q   N+G + R+   FN     L+       ++KA  +S  A   +    + S
Sbjct: 198 VLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLP---IVS 254

Query: 76  ------NLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRE 128
                  L E    +  +    A      K V     E A  L E+      + +I G E
Sbjct: 255 GNWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEK-----PLCLILGSE 309

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             GL+ +   +   ++S P+   F SLN+S A  + ++   
Sbjct: 310 GNGLSEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYMLQ 349


>gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana]
 gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana]
 gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 350

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            NI    R+     +  + +V+          R  S  A+  +D +  +   KE    + 
Sbjct: 166 GNISAAFRSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLD-IEFWDTPKECFKVLK 224

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +     ++  +                I+ G E  G+++E + LS+ 
Sbjct: 225 SRGYRIATT----HLGMDTVSIYDM--------DWSCPTAIVVGNEGRGISDEALELSDL 272

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
             S P+N +  S N+S A  +++ 
Sbjct: 273 RCSIPMNGMVDSFNVSVAAGILMH 296


>gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 286

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +   R    
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAVPVARAAP- 193

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E IA      +  + AT      +++++   K             + V ++ G E+ G
Sbjct: 194 -EEFIAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L ++    ++A+   P      SLN++ A  +M++E   + +  +E
Sbjct: 239 LPDQLAGQADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284


>gi|329889553|ref|ZP_08267896.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844854|gb|EGF94418.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 279

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 32/180 (17%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +Q  AK   + L   +   N+G + R   +     + L+       S +A  ++  +  
Sbjct: 121 AIQPDAKPCWVALEQVRDPGNLGTIIRTADSAGCGGVILIGDCVDPFSVEAVRATMGS-- 178

Query: 67  VIDSVRVFSNLKEAIADLHFIYATT----ARNRNNFKSVLAP------KEAAIVLNERIF 116
                               ++A T    +R          P      +  A        
Sbjct: 179 --------------------VFAVTISKASREEFLAWRAQWPGSVIGTRLDATHGYRDSP 218

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 I+ G E+ GLT+E  A  +  +  P+     SLN++ A  +MV+   + +  SS
Sbjct: 219 VRHPAIIMMGNEQAGLTDELAAACDLNVKIPMRGRADSLNLAVATGVMVYAVTDAAYGSS 278


>gi|303232390|ref|ZP_07319082.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481474|gb|EFL44542.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
           PB189-T1-4]
          Length = 390

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 11/146 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G   R+      T + + N R       A  +SA A   +  V+V +N+  A+ +L
Sbjct: 223 EGNLGACVRSAEIVGATAVIIANARAAQVGVGAYKTSAGAVLRVPIVQV-ANVARAVLEL 281

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +N+    +A  E A        +  NV ++ G E+ G++       +   
Sbjct: 282 ----------KNHGFWAMAATEHAERAVWSSPTAGNVCLVMGSEQQGISALVRKSCDFEC 331

Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170
             P   +  SLN++QA  +M +E + 
Sbjct: 332 KLPQRGVIESLNVAQAATVMCYEWLR 357


>gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 248

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 24/171 (14%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q      ++IL       N G + R      +  + +   R    +     +S  A   +
Sbjct: 96  QQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHV 155

Query: 69  DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              RV +NL +A+  L     +++ T  T      +                  +   + 
Sbjct: 156 PIARV-TNLSQALDQLKANGFWVFGTDVTGTPSYKW-----------------NTSGKLA 197

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +I G E  G++       + +I+ P+     SLN S A  ++++E   N +
Sbjct: 198 LIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRNKL 248


>gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
 gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
          Length = 275

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 25/166 (15%)

Query: 14  GPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            P ++L+       N+G + R+   F      ++ P     + +  + +  A   ++   
Sbjct: 126 PPRVLLLDRVSDPHNVGAILRSAEVFGAC--AVIAPH-RHSAPETGALAKTASGALERQP 182

Query: 73  V--FSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGII 124
               +NL    EA+  + ++              L     A    E    G+    V ++
Sbjct: 183 YLRVTNLGRAIEALQGMGYVV-------------LGLAGEAERTIEEALEGRRSGPVALV 229

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G E  GL  +     + ++    +  F SLN+S A  + ++    
Sbjct: 230 LGAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275


>gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 246

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 23/165 (13%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSV 71
             +IIL       N+G + R         L L  P+ G  S    A  +SA A   +   
Sbjct: 96  PLIIILDGVTDVGNLGAIVRTAVCVGAHALVL--PKQGSASLGSGAMKTSAGALAHLPIC 153

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           R  +NL+ +I  L      + A                E       ++       I+ G 
Sbjct: 154 R-EANLQASINYLQNSGLQVIACH--------------EKTQTSIYQVKLTVPTAILLGS 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+  + +   +   S P+     SLN+S A  ++++E     
Sbjct: 199 EDKGIQPQLLNKVDVQASIPMVGPISSLNVSVAAAIILYESFRQR 243


>gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1]
          Length = 294

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 23/177 (12%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           P   QL  +A+   I+  +V+P    N+G + R+     +    L+ P    P   +A  
Sbjct: 130 PSVEQLCKNARRVAILENVVNPT---NVGAIFRSAAALGM-DAVLLTPACADPLYRRASR 185

Query: 60  SSANADCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
            S      I       +        + +  L +  A  A  R++  S+           E
Sbjct: 186 VSMGTVFQIPWTYFDKNACWPDGAMDVLHKLGYKTAAMA-LRDDSVSIDD---------E 235

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++ S + + I+ G E  GL +  IA  +  +  P+     SLN++ A  +  W+   
Sbjct: 236 KMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMTHGVDSLNVAAASAVAFWQLGM 292


>gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
           7942]
 gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
           7942]
          Length = 519

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 18/193 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           ++    Q + +   PVI++        N+G + R         L +  P+       A  
Sbjct: 321 LSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTAEALGAHGLVI--PQRRAVGVTAAV 378

Query: 60  SSANADCVIDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +   A   ++S    RV  NL  A+ +L             F    A  EA   ++E  F
Sbjct: 379 AKVAAGA-LESFPVARVV-NLNRALEEL---------KDAGFWIYGAAGEAKQSIHETSF 427

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           SG  V ++ G E  GL+       + +IS P+     SLN S A  ++++E        +
Sbjct: 428 SG-PVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLYEVSRQRQQLT 486

Query: 177 EKNVKEQNTPATK 189
                  +  AT 
Sbjct: 487 HHLEGIADNGATA 499


>gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
          Length = 301

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 21/160 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L      ENIG + R      +  +   N        +    S      +    +  
Sbjct: 146 VVVLEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAG 205

Query: 76  N-------LKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                   L E A A  H +              L P   A+ L + +   + V ++ G 
Sbjct: 206 TYTTWQRSLTELADAGFHLV-------------SLTPDPEAVHLEDALAGREKVALLVGA 252

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E  GLT   +  ++     P+ P   SLN++ +  +  +E
Sbjct: 253 EGPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYE 292


>gi|325282387|ref|YP_004254928.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
           MRP]
 gi|324314196|gb|ADY25311.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
           MRP]
          Length = 221

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 29/200 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD---GWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
             N+  + R            V P+    G    +   +S+ +     SV+  ++  EAI
Sbjct: 30  PHNLSAILRTCDAVGAMTAHAVPPQSMSLGSFRSRIFEASSGSAHKWVSVQQHASALEAI 89

Query: 82  ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             L      + AT    R+       P              +   ++ G E++G+++   
Sbjct: 90  RTLQGQGVQVLATHLSQRSVD--YREPDYT-----------RPTCVLLGAEKFGVSDVAA 136

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF-- 195
             ++A I  P+  +  SLN+S A   +++E     + +      +     +  EL     
Sbjct: 137 EAADANIVIPMMGMVQSLNVSVAAATILFEAQRQRLEAGMYAQPQL----SDEELRRMAF 192

Query: 196 ---LDYLEISLEERGYFRPV 212
                 L    +E+G   P 
Sbjct: 193 RWAYPDLAEKYDEQGVEYPP 212


>gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13]
 gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
 gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
          Length = 286

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A +L    + P++ +L       N+G + R+   F    L   +      S     +++
Sbjct: 125 RARKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQESGVLAKAAS 184

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277


>gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 269

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 58/151 (38%), Gaps = 20/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEA--IAD 83
           N+G + R+    ++    LV+PR G P   ++   S      +   R+ S  ++   + +
Sbjct: 132 NVGAIFRSAAALDI-DAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLSSWPQDLYLLKE 190

Query: 84  LHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
             F  A    TA  R+                    + + + ++ G E  G++ E +A  
Sbjct: 191 HGFTVAALELTADARDVDAV-------------AAQNPEKLALVLGTEGAGMSAETLAAV 237

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +  P+     SLN++ A  +  WE    
Sbjct: 238 DLAVKIPMRNGVDSLNVAAASAVAFWELRAR 268


>gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
          Length = 208

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 10/171 (5%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   Q    G V+ L       N+G + R+   F    + + + R    +  A  +SA A
Sbjct: 47  AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 106

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I    + +NL +A+    F  A            LA +  +   +   F G  V I+
Sbjct: 107 AARIPVA-MATNLNQALG--KFAAA------GWMIVGLAGEADSDFASAPGFDGPLV-IV 156

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G E  GL        + + S P++    SLN S A  + ++E        
Sbjct: 157 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 207


>gi|261749221|ref|YP_003256906.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497313|gb|ACX83763.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 259

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 22/166 (13%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCV 67
           K P I IL   +   N+G + R      +  + L N +    +      S  +      +
Sbjct: 107 KNPFILILDGIEKPGNLGSMLRIADAVGVHFIILCNIKTYIYNPNIIRCSLGSVFTNKIL 166

Query: 68  IDSVR-VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           I+  + + S L+                +     V    E AI L    FS   + I+ G
Sbjct: 167 IEKKKSIISWLQ---------------KKKIEIVVTGFHEKAIQLYRTKFS-SRLAIVLG 210

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G++   + +++ I++ P+     SLN+S A+ +M++E +   
Sbjct: 211 SENKGVSPIWLNIAHKIVTIPMFGDMDSLNVSNAMSIMIYEVLRQR 256


>gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus
           castenholzii DSM 13941]
          Length = 248

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 12/166 (7%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L      P ++L+    Q  +N+G + R      +  + +   R    +    ++SA A
Sbjct: 88  TLAEERNEPALLLMLDHIQDPQNVGTLLRTAEVVGVHGVIIPGRRAAEITPAVVNASAGA 147

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  + V SNL   I  +                V    +    + + +     + ++
Sbjct: 148 VEHL-RIVVVSNLAATIERVQHA---------GVWVVGVEDDERARVFDEVDLDLPLTLV 197

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G E  GL        + ++  P+     SLN++ A  ++++    
Sbjct: 198 LGAEGSGLARLTRERCDFLVRLPMRGRIASLNVAVAGSIVLYHAWR 243


>gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666]
          Length = 264

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 21/167 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68
           +A+  +++L       N+G   R           ++ P+D      A  +  ++ A   +
Sbjct: 113 TAQPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAAGINATVAKVASGAAETM 170

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
               V +    L E      +   T+              + A      +     V ++ 
Sbjct: 171 PYFMVTNLARTLGELKERNIWCIGTS--------------DDAPKTIYDVDLKGPVALVL 216

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 217 GAEGEGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQR 263


>gi|307293833|ref|ZP_07573677.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306879984|gb|EFN11201.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 156

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA---NADCVI 68
           A+G  I L  P++  N+G + R    F++  + +V P     S+     +A    A    
Sbjct: 2   ARGMRIALYQPEIAGNVGAILRLAACFSVP-VDIVMPMGFAFSDAKLKRAAMDYGAS--- 57

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             V   +N +          A  A+ R   + ++     A      +    +  ++ G E
Sbjct: 58  ADVTRHANFE----------AFDAQRRARGQRLMLMSSHASQRLPEVEFRADDILLMGSE 107

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             G+ +    L++  +  P+ P F SLNI+ +  + V E +  +    +
Sbjct: 108 SAGVPDAVRDLADVRVRIPMAPGFRSLNIAVSTGIAVAEALRQTGSFPQ 156


>gi|254707158|ref|ZP_05168986.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|254709299|ref|ZP_05171110.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|256030822|ref|ZP_05444436.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|261314635|ref|ZP_05953832.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261316808|ref|ZP_05956005.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|265987878|ref|ZP_06100435.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|261296031|gb|EEX99527.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261303661|gb|EEY07158.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|264660075|gb|EEZ30336.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
          Length = 176

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 16  LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 75

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 76  VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 113

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + V +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 114 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 173

Query: 177 EKN 179
           E+ 
Sbjct: 174 ERG 176


>gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 243

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N++ + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T               +     + +  +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT---------------DMQGTPSHKWNTGGKLVLIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRV 242


>gi|161524445|ref|YP_001579457.1| tRNA/rRNA methyltransferase SpoU [Burkholderia multivorans ATCC
           17616]
 gi|189350800|ref|YP_001946428.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|160341874|gb|ABX14960.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia multivorans ATCC
           17616]
 gi|189334822|dbj|BAG43892.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
          Length = 260

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 19/172 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P L        ++L   Q   N+G + R+     +       P   +  S K   + 
Sbjct: 103 PSQP-LPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRAG 160

Query: 62  ANADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A  ++    +  ++  +A+A         AR       V                 Q 
Sbjct: 161 MGAHFLLS---IHEDVAPDALA---------AR---LDVPVALTDSHGAQAIYDCDLSQP 205

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           V  +FG E  G++     ++   ++ P      SLN++ A  + ++E +   
Sbjct: 206 VAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-3C]
 gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-3C]
          Length = 246

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 20/177 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           + P+   +  + + P+ +L+D      N G + R      +  + +        +     
Sbjct: 84  LDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASCTGVDGIIIQKKGTAPVTADTIK 143

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +SA A   +  ++V  +LK+A+  L      + A T              E A      +
Sbjct: 144 TSAGAAFQVPIIKV-DHLKDAVFHLQACGIQVIAAT--------------EKAKNDLYEV 188

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  I+ G E  G+T   + ++NA    P+     SLN+S A  + ++E +   
Sbjct: 189 SFTGPTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLYEAVRQR 245


>gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 244

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P + ++ + P ++IL       N+G   R      +    +V PRD     +   +  + 
Sbjct: 86  PAMLDNLEMPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   I  + V +             A T R     N   V    EA   L +   +G  
Sbjct: 144 GAAETIPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242


>gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
           15579]
 gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
           15579]
          Length = 257

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 59/161 (36%), Gaps = 11/161 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N G + R      +  + +   R+   +     +SA A   +   +V +
Sbjct: 108 IVILDEIEDPHNFGSILRTAEVCGVHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTN 167

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                   ++ +     + +     +             +     + ++ G E  G++  
Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVSLSGPIALVIGSEGRGISKL 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  + ++  P+     SLN S A  ++++E ++  + S 
Sbjct: 217 TKSKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257


>gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 322

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81
             N+G + R++  F    + L   R    +  A  +S+ A   +   +   +   L+   
Sbjct: 182 PRNLGAIIRSVSAFAGDGVILPERRSAGVTATAWKTSSGAAARVPVAKATNLTRTLQNCK 241

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              +F+        +    +  P        +   + + + ++ G E  GL+       +
Sbjct: 242 KQGYFVVGL-----DGGGDMSLP--------QLELATEPLVVVVGSEGKGLSRLVTEHCD 288

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           AI+S P+     SLN S AV + ++E       +
Sbjct: 289 AIVSIPIESAMESLNASMAVGITLYEIARRRASA 322


>gi|238793926|ref|ZP_04637545.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           intermedia ATCC 29909]
 gi|238726693|gb|EEQ18228.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           intermedia ATCC 29909]
          Length = 364

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 226 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 283

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 284 ----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 333

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           S        SLN+S A  +++ E    +   
Sbjct: 334 SIGGTGRVESLNVSVATGILLAEWWRQNSAQ 364


>gi|162418675|ref|YP_001607797.1| putative methyltransferase [Yersinia pestis Angola]
 gi|162351490|gb|ABX85438.1| RNA methyltransferase, TrmH family [Yersinia pestis Angola]
          Length = 388

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  AK  V+ L +     N+G + R   +F +  + L +P         R++   A+ + 
Sbjct: 233 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 291

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  +    +             R    +++       V   +      + ++ G+E
Sbjct: 292 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 340

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GLT+      +  +S        SLN+S A  +++ E    +    
Sbjct: 341 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 388


>gi|34762513|ref|ZP_00143511.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887846|gb|EAA24916.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 261

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 21/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71
           +IL D     N+G + R     N   + L        +EK   +S  +        ++  
Sbjct: 114 VILDDVSDPGNLGTIIRICDATNFKDIILTKSTVDAYNEKVIRASMGSILNVNLYYLEKS 173

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + + LKE                NN+  +    +   +   +I   +   IIFG E  G
Sbjct: 174 EIINFLKE----------------NNYSIISTYLDKTAIPYNKIKLKEKNAIIFGNEGNG 217

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++++ I +++     P+     SLN++ A  +++++  E
Sbjct: 218 ISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 256


>gi|297243612|ref|ZP_06927543.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888363|gb|EFH27104.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 302

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA 82
             N G + R         +  V+      + K   S+A +   +  V+  V    + A  
Sbjct: 152 PGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLSVQDWFECAAK 211

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A      +  K V  PK    +L        ++ I+FG E  GL  E +   + 
Sbjct: 212 SNIRVIAADIYGTDKIKPVPFPK----ILVNSEVISSSLAILFGNEARGLPKEVLQQVDD 267

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
           I   P+     S+N++ +  +M+
Sbjct: 268 ISIIPIYGKAESMNLATSAAVML 290


>gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti
           VCD115]
 gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus
           deserti VCD115]
          Length = 241

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            V++L       N G + R+        + +   R    S     ++A A   +   +  
Sbjct: 94  VVVLLDGITDPRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAGATSYLPVAQT- 152

Query: 75  SNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            NL   I    A+  ++Y                 EAA  L +  FSG  + ++ G E  
Sbjct: 153 KNLPRLIDQLKAEGVWVYGAAG-------------EAAQELGKVDFSG-KLALVIGAEGE 198

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G+        + ++S PV     SLN S A  ++++E     
Sbjct: 199 GMRRLVREKCDVLVSIPVRGKVQSLNASVAAGILLYEATRGR 240


>gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1]
          Length = 246

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 19/157 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
             N G + R+        + +   R    S     ++A A   +   +   NL   I   
Sbjct: 103 PRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAGATAYLPVAQT-KNLPRLIDQL 161

Query: 82  -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            AD  ++Y                   A     R        ++ G E  G+        
Sbjct: 162 KADGVWVYGAAG--------------EAAQDVTRTDFSGKAALVIGAEGEGMRRLVREKC 207

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + ++S PV     SLN S A  ++++E   +   S  
Sbjct: 208 DVLVSIPVRGQVQSLNASVAAGILLYEMTRSRGKSGG 244


>gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
          Length = 383

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    LV       S  A  ++   A+ V        +    +A+
Sbjct: 246 PHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLAE 302

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      R+   +++           +        I+ G+E  GL++      +  
Sbjct: 303 F----------RHAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVK 352

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +S        SLNIS A  +++ E    +  
Sbjct: 353 VSIGGTGKVESLNISVATGILLSEWWRQNQA 383


>gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 329

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 10/156 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F    + +   R    +  A   SA A   +   RV  N
Sbjct: 180 IALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLPVARVV-N 238

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AI         + + R  +   L     A V  E  F    + ++ G E  G++   
Sbjct: 239 LTKAIE--------SLKERGYYSIDLDGGGTATV-GESGFESDPLIVVLGSEGKGISRLV 289

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               ++I+S P+  L  SLN S A  + ++   +  
Sbjct: 290 REQCDSIVSIPMTSLVESLNASVAAGIALFSVHQAR 325


>gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
           DSM 44985]
 gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
           DSM 44985]
          Length = 296

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L       N+G V R+   F    + + N R    +  A  +SA A   +   +   N
Sbjct: 148 VALDHISDPRNLGAVVRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQ-APN 206

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  ++             R      L  +       +     + + ++ G E  GL+   
Sbjct: 207 LARSLKQWQ--------ERGLLLVGLDAE--GDTSLDDFTGTEPLALVVGSEGKGLSRLV 256

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + ++S P++    SLN+S A  +++ E     
Sbjct: 257 RESCDFVVSIPMSGQVESLNVSVATGVVLGEIARQR 292


>gi|171742772|ref|ZP_02918579.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
           27678]
 gi|283456178|ref|YP_003360742.1| methylase [Bifidobacterium dentium Bd1]
 gi|306822630|ref|ZP_07456008.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309800805|ref|ZP_07694937.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278386|gb|EDT46047.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
           27678]
 gi|283102812|gb|ADB09918.1| rRNA methylase [Bifidobacterium dentium Bd1]
 gi|304554175|gb|EFM42084.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308222341|gb|EFO78621.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 290

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 20/161 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N G V R+        +  V+      + K   S+A +   +    +    +   A  
Sbjct: 140 PGNAGTVIRSADAAGCAAVVFVDECVDIFNPKVIRSTAGSLFHLP--VLTMGTEAFFAWC 197

Query: 85  HF---------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                      +Y T +R          P+    VL E         +IFG E  GLT E
Sbjct: 198 DERNLAIYAADVYGTDSRP---------PEPLTDVLAEPSTLAGAKTMIFGNEARGLTRE 248

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +  ++ I+S P+     SLN+  +  +M+     +S V  
Sbjct: 249 VLDRTDRIVSIPIYGKAESLNLGTSAAVMLLSLAMSSHVER 289


>gi|94495460|ref|ZP_01302040.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58]
 gi|94424848|gb|EAT09869.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58]
          Length = 156

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 23/163 (14%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVID 69
            I L  P++  N+G + R  A     +    ++ P     S+     +A     A  V  
Sbjct: 6   RIALYQPEIAGNVGAILRLAACLAVPVD---IIMPTGFAFSDARLKRAAMDYGAAADVTR 62

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
               F                 A  R   + +L     A      +    +  ++ G E 
Sbjct: 63  HAN-FETFD-------------AVRRAGGRRLLLMSAHASQRLPDVRFKSDDVLLMGSES 108

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+ ++   L++  +  P+ P F SLNI+ +  + V E +  +
Sbjct: 109 AGVPDDVRDLADIRVRIPMAPGFRSLNIAVSTGIAVAEALRQT 151


>gi|153950911|ref|YP_001402163.1| methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|152962406|gb|ABS49867.1| RNA methyltransferase, TrmH family [Yersinia pseudotuberculosis IP
           31758]
          Length = 395

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  AK  V+ L +     N+G + R   +F +  + L +P         R++   A+ + 
Sbjct: 240 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 298

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  +    +             R    +++       V   +      + ++ G+E
Sbjct: 299 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 347

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GLT+      +  +S        SLN+S A  +++ E    +    
Sbjct: 348 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 395


>gi|269137918|ref|YP_003294618.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267983578|gb|ACY83407.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304557970|gb|ADM40634.1| hypothetical tRNA/rRNA methyltransferase YfiF [Edwardsiella tarda
           FL6-60]
          Length = 393

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 15/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSNLKEAIA 82
             N+G + R   +F +    ++ P        A  R++   A+ V           +AI 
Sbjct: 255 PHNLGGIMRTCAHFGIRG--IIAPESAALESGAAVRTAEGGAEHV-----------QAID 301

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F  A     R  +  V            R      + ++ G E  GL++  +   + 
Sbjct: 302 AEDFSAALDTFRRAGYTIVTTSSHKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLQQGDL 361

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +S        SLN+S A  +M+ E    
Sbjct: 362 SVSIGGTGSVESLNVSVATGIMLAEWWRQ 390


>gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 246

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAI--- 81
           NIG + R      ++ + L  P+ G  S  E    +SA A   I   +V  NL + I   
Sbjct: 108 NIGAIIRTAECTGVSGIIL--PKQGSASIGEDMVKTSAGAIFNIPLCKV-DNLIDTIYYL 164

Query: 82  --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             + +  I AT               E A  L  ++   + + I+ G E  G++   + +
Sbjct: 165 QGSGIKVIGAT---------------EKASSLLYQLNLTEPLAIVMGAEDTGISKGVLKV 209

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +     P+     SLN+S A    ++E +   +   
Sbjct: 210 LDERAKLPIQGEISSLNVSVACGAFLYEVVRQRLNGQ 246


>gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           SK119]
 gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           SK119]
          Length = 249

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL   +   N+G + R      +  + +   R    ++    +S  A   +  +RV +
Sbjct: 97  IIILDGLEDPHNLGSIIRTADASGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTN 156

Query: 76  N---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   + +++    A N  +++++               +   + I+ G E  G+
Sbjct: 157 LSKIIDELKDNGYWVAGAEADNATDYRNM--------------AADMPLAIVIGSEGQGM 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +       +  I  P+     SLN S A  LM++E   
Sbjct: 203 SRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYR 240


>gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501]
 gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501]
          Length = 241

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 25/173 (14%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P AP     A    I L + Q   N+G + R +  F   +  L++P    P + K   SS
Sbjct: 89  PDAPVSAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFR-CLLSPGSVDPYNPKVVRSS 147

Query: 62  ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A        +F     L  A+         + R R    + L  +   +         
Sbjct: 148 MGA--------IFHAPMELDVALD--------SLRTRFARIACLDMQGEPVQSTAFTT-- 189

Query: 119 QNVGIIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                +FG E  G+  +++ AL     + P      SLN++  V +  +E   
Sbjct: 190 -FECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESLNLAATVNMCAYELSR 241


>gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
 gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
          Length = 254

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           +IL + +   N+G + R      +  + +   R    ++    +S  A   +   RV   
Sbjct: 106 VILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNI 165

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + + +      +I+ T  +  +                    +   V I+ G E  G++
Sbjct: 166 NNTIDKLKKANFWIFGTDMKGADYTDW---------------NADGPVAIVIGNEGKGIS 210

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            +     + +++ P+     SLN S A  L++++
Sbjct: 211 AQTKKKVDQMLTIPMIGHVQSLNASVAAALLIYQ 244


>gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa
           DSM 4126]
 gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa
           DSM 4126]
          Length = 258

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 27/154 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVR------VFSNLK 78
           N G +AR+     +    +V P  G    +  A  +SA A   I   R          L+
Sbjct: 118 NFGAIARSAECAGVD--AIVIPFKGSAQINSDAVKTSAGALHYIPVCRENSLKNTVEYLQ 175

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +  + L  +  T               E    L       Q + II G E  G++N+ I 
Sbjct: 176 K--SGLQVVACT---------------EKGKDLIYNTPMAQPLAIILGSEEDGISNDLIR 218

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ +   P+     SLN+S +  + V+E +   
Sbjct: 219 TADFLAKIPMTGKIASLNVSVSCAIAVFEAVRQR 252


>gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1]
 gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 250

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 21/165 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70
           K  +++L       N+G   R           ++ P+D      A  +  ++ A   +  
Sbjct: 100 KPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVASGAAETMPY 157

Query: 71  VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             V +    L E      +   T+              + A      +     V ++ G 
Sbjct: 158 FMVTNLARTLGELKERNIWCIGTS--------------DDAPRTLYEVDLKGPVALVLGA 203

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 204 EGAGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEALRQR 248


>gi|88810460|ref|ZP_01125717.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
 gi|88792090|gb|EAR23200.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
          Length = 209

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 12/161 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R      + Q   V P  G P+    SS+     V  +V    ++  AI  L
Sbjct: 22  PHNLAAILRTCDAVGVFQAHAVWP-GGVPAVHHHSSAGVGKWV--NVVAHPDVCSAIQAL 78

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
           H        N         P   A+   +  ++     ++ G E WG++       +  I
Sbjct: 79  H--------NEGLRVYAAHPVAGAVDYRQADYTV-PCAVLMGAELWGVSEAACQRVDEFI 129

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           + P+  L  S+N+S A  ++++E     +     N      
Sbjct: 130 TIPMFGLGASVNVSVAAAVILYEAQRQRLAKGMYNHPRLAP 170


>gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 300

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 2   TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           TP +    ++ +    +IIL       N+G + R+   F      ++  R   PSE A  
Sbjct: 137 TPLSSPTLDTIQNSQLIIILDHINDPHNVGAILRSSVAFGCGG--IITTRRYSPSESAVL 194

Query: 60  S--SANADCVIDSVRVFSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +  ++ A   I  +R+  NL +A+  +H + + T   +  +   +           E+  
Sbjct: 195 AKSASGALEHIPYIRI-GNLTDALHKIHAWQFQTIGLSSESNNPL-----------EKEI 242

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               + +I G E  GL  +    + +I    +  +  SLN+S A  + ++
Sbjct: 243 KSDKIALILGAEGKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALY 292


>gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 270

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++    Q   N+G + R    F    +          + K   ++  +   +  +R   
Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185

Query: 76  N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L + + D  F              V  P     +   +I   +   ++ G E  G++
Sbjct: 186 EGKLIKILKDNSFAV-----------YVTTP--YGDIEISKIVPDKRFCVVIGNESEGVS 232

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    ++   I  P+     SLN + A  ++++E  + 
Sbjct: 233 DSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|302535528|ref|ZP_07287870.1| rRNA methylase [Streptomyces sp. C]
 gi|302444423|gb|EFL16239.1| rRNA methylase [Streptomyces sp. C]
          Length = 245

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
               PV++L +P+   N+G V R    F  T +      D W     R+ +      +  
Sbjct: 103 PRHAPVVLLDNPRNLGNVGAVVRLAAGFGATGVVTRGDLDPWHPNVVRAGAG-----LHY 157

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 L+                       +   +        +    +  + FG ER 
Sbjct: 158 ATTVDRLE---------------LEELPPGPVYALDPEGEDIRALVLPDDALLAFGSERH 202

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           G++ E  A ++ ++S P+ P   S N++ +V + ++  
Sbjct: 203 GISPELRARADHLVSLPMRPQVSSYNLATSVAMTLFHW 240


>gi|257146522|emb|CAX30805.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Pentastiridius sp.]
          Length = 239

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 13/173 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  V R      + Q+  +  ++   S  A ++ +N       V+  + ++ AI+  
Sbjct: 30  PHNISAVIRTADAVGIPQIHAIWCKNSSKSLSAAAAGSN---HWVKVKTHATIENAISTC 86

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             +           + + A      +   +I   Q   II G+ER  ++ + + L++  I
Sbjct: 87  KAV---------GMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALTLADHNI 137

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
             P+  +  SLN+S A  L+++E       +S  +      P  + +     +
Sbjct: 138 HIPMMGMVQSLNVSVASALILYEAQRQRQDASMYDSLFSQLP-EEEQQEWLFE 189


>gi|32265877|ref|NP_859909.1| rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC 51449]
 gi|32261926|gb|AAP76975.1| predicted rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC
           51449]
          Length = 156

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 13/156 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+LV PQ+ +N G + R     + + L L++P     ++K    +         ++V+  
Sbjct: 6   IVLVQPQIPQNTGNIGRLCVATD-SVLHLIHPLGFSTTQKELKRA--GLDYWQHLQVYE- 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                ADL+  +     +    K        A  L       Q   + FGRE  GL  + 
Sbjct: 62  ----WADLNTFW----HSYPPSKRHFFFSTKAQQLYYDADFSQGGFLYFGREDAGLNEDI 113

Query: 137 IALSNAIIS-FPVNPLFPSLNISQAVLLMVWECMEN 171
           +      +   P+     S+N++ +V   ++E +  
Sbjct: 114 LHTYQKQVYKLPMKAGVRSINLATSVGAALYEGVRQ 149


>gi|307721996|ref|YP_003893136.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306980089|gb|ADN10124.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 262

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 63/161 (39%), Gaps = 10/161 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+L +    EN+G +AR+     +    L        + +A   S     ++  + V+ 
Sbjct: 112 IIMLDNITSSENVGSIARSAAALGVKSYFLPKSSPHPFNRRALRVSMGYAHML-GIHVYK 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++ E I       A  A     + + + P    +     +       +I G E  G++ +
Sbjct: 171 DIFETIE------ALKAAGYRVYAAEVTPDSTPL---SSLHVTSKWVLIMGHEGKGISQD 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + + + ++S  +     S N+  A  +M++   +  + ++
Sbjct: 222 ILDVCDEVVSIEMQEGIKSFNVGVAASIMMYAFRQRGMAAT 262


>gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
 gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
          Length = 268

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 16/153 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKE 79
           Q   N+G + R      +T + LV       + K   ++  +     +I+    F +++E
Sbjct: 124 QDPGNLGTIIRTADAAGVTGVALVKGTADLYNPKTLRATMGSVFHVPIIN----FDSIEE 179

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A    H         ++  K ++            +   + V ++ G E  G ++  I  
Sbjct: 180 A---CHLA------KKHGLKLIVTDISKDSSSYLAVDYSEPVALVVGNEARGASSFAIEN 230

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           S+  ++  +     SLN+S A  ++++E     
Sbjct: 231 SDYRVAIKMPGKAESLNVSVAAGIILFEAARQR 263


>gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 230

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 61/156 (39%), Gaps = 25/156 (16%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76
           L + Q   N+G + R++   N   + +        +     +S+ A   I+ V++   SN
Sbjct: 91  LDEVQDPHNLGAILRSVEATNYDGVIISKKHQVPLTGVVAKTSSGA---IEHVKLILVSN 147

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           L + I      D   +  T                 A    + I   QN+ II G E +G
Sbjct: 148 LYQTILKLQKEDF-LVVGTAG--------------EATASYKEIPKNQNLLIIMGNEGFG 192

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L        + ++S P+     SLN+S A  L+++E
Sbjct: 193 LRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYE 228


>gi|108808751|ref|YP_652667.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|108810992|ref|YP_646759.1| putative methyltransferase [Yersinia pestis Nepal516]
 gi|145600164|ref|YP_001164240.1| putative methyltransferase [Yersinia pestis Pestoides F]
 gi|149364890|ref|ZP_01886925.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
 gi|165926567|ref|ZP_02222399.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936079|ref|ZP_02224649.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010984|ref|ZP_02231882.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213137|ref|ZP_02239172.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399004|ref|ZP_02304528.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421660|ref|ZP_02313413.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423225|ref|ZP_02314978.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469723|ref|ZP_02334427.1| predicted methyltransferase [Yersinia pestis FV-1]
 gi|170025557|ref|YP_001722062.1| putative methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|186894222|ref|YP_001871334.1| putative methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|218930294|ref|YP_002348169.1| putative methyltransferase [Yersinia pestis CO92]
 gi|229013132|ref|NP_668251.2| putative methyltransferase [Yersinia pestis KIM 10]
 gi|229220784|ref|NP_992052.2| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|229838881|ref|ZP_04459040.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896374|ref|ZP_04511543.1| predicted methyltransferase [Yersinia pestis Pestoides A]
 gi|229899450|ref|ZP_04514593.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901210|ref|ZP_04516332.1| predicted methyltransferase [Yersinia pestis Nepal516]
 gi|270489397|ref|ZP_06206471.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Yersinia pestis KIM D27]
 gi|294504983|ref|YP_003569045.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
 gi|108774640|gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516]
 gi|108780664|gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua]
 gi|115348905|emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92]
 gi|145211860|gb|ABP41267.1| tRNA/rRNA methyltransferase [Yersinia pestis Pestoides F]
 gi|149291303|gb|EDM41377.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
 gi|165916224|gb|EDR34831.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921495|gb|EDR38692.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989984|gb|EDR42285.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205924|gb|EDR50404.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960579|gb|EDR56600.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051508|gb|EDR62916.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057395|gb|EDR67141.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752091|gb|ACA69609.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           YPIII]
 gi|186697248|gb|ACC87877.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681139|gb|EEO77233.1| predicted methyltransferase [Yersinia pestis Nepal516]
 gi|229687852|gb|EEO79925.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695247|gb|EEO85294.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700650|gb|EEO88680.1| predicted methyltransferase [Yersinia pestis Pestoides A]
 gi|262363048|gb|ACY59769.1| putative tRNA/rRNA methyltransferase [Yersinia pestis D106004]
 gi|270337901|gb|EFA48678.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Yersinia pestis KIM D27]
 gi|294355442|gb|ADE65783.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
 gi|320016459|gb|ADW00031.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 388

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  AK  V+ L +     N+G + R   +F +  + L +P         R++   A+ + 
Sbjct: 233 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 291

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  +    +             R    +++       V   +      + ++ G+E
Sbjct: 292 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 340

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GLT+      +  +S        SLN+S A  +++ E    +    
Sbjct: 341 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 388


>gi|328542786|ref|YP_004302895.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
 gi|326412532|gb|ADZ69595.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
          Length = 157

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 62/174 (35%), Gaps = 25/174 (14%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P + L  P + +N G + R      +  + L+ P     S+ A   +      ++   + 
Sbjct: 2   PDLALFQPNIPQNTGTILRLAACMGVA-VHLIEPAGFPLSDSALRRT--GMDYLERAALI 58

Query: 75  SNLK----EA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            +L     EA         +  TT   ++       P + + +L            +FGR
Sbjct: 59  RHLDWPAFEAWRRAEGRRLVLLTT---KSADPYPHFPFQVSDIL------------LFGR 103

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           E  G+       ++A ++ P+     SLN++ +  +++ E +  +         
Sbjct: 104 ESAGVPAAVHEAADARLTIPMVAGLRSLNVAVSAAMVLGEALRQTAAFPPAPAG 157


>gi|323700776|ref|ZP_08112688.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. ND132]
 gi|323460708|gb|EGB16573.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           ND132]
          Length = 196

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 15/171 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  V R+   F +  + L      WP   A  SS +A   ++         E +A+L
Sbjct: 34  PHNVSAVLRSCDAFGVAGVHLYYTDSQWPDL-ALKSSGSATKWVERTEHVDA-AEMVAEL 91

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   R     ++  +     ++  +     +   II   E  G + +  AL    I
Sbjct: 92  K------GRGMRVLRTGFSDSARPVMDFDFT---KPTAIILSNEHRGTSPDLAALVPDEI 142

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
             P+  +  S N+S A  +++++       +   +        ++ EL S 
Sbjct: 143 YIPMQGMVQSFNVSVAAAIILYQAFTQRDAAGMYDEPSF----SREELESL 189


>gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24]
 gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24]
          Length = 328

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L +   + + V I+ G E  GL+       + I+S P++    SLN S AV + ++E   
Sbjct: 264 LPDLSLAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISR 323

Query: 171 NSIVS 175
                
Sbjct: 324 QRAAK 328


>gi|21957656|gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM 10]
 gi|45435370|gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 393

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  AK  V+ L +     N+G + R   +F +  + L +P         R++   A+ + 
Sbjct: 238 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 296

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  +    +             R    +++       V   +      + ++ G+E
Sbjct: 297 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 345

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GLT+      +  +S        SLN+S A  +++ E    +    
Sbjct: 346 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 393


>gi|319957044|ref|YP_004168307.1| tRNA guanosine-2'-o-methyltransferase [Nitratifractor salsuginis
           DSM 16511]
 gi|319419448|gb|ADV46558.1| tRNA guanosine-2'-O-methyltransferase [Nitratifractor salsuginis
           DSM 16511]
          Length = 217

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 21/128 (16%)

Query: 90  TTARNRNNFKSVLAPKEAAIVLNERIFSG---------------------QNVGIIFGRE 128
           T   +R   +  +  +E A  L ++   G                     +   ++ G E
Sbjct: 73  TQGAHRWLRRHRIPYEERAEFLRKKREEGMQIVVTHLEEASLDFRDVDYTRPTMLVLGNE 132

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           R G++ E +A ++  +  P++ +  SLNIS A  L+++E       +          P  
Sbjct: 133 REGVSPEVLAEASHSVIIPMHGMVQSLNISVAAALILYEAERQRKAAGYYEEARMPEPER 192

Query: 189 KGELLSFL 196
           +  L  +L
Sbjct: 193 RALLEEWL 200


>gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
 gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
          Length = 280

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 16/150 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSVRVFSNLKEAI 81
           N+G V R+    N+  + L        S +    S           +D      +L E +
Sbjct: 142 NVGAVFRSAAALNVDAVILTAKCADNLSRRVLRVSMGTVLNVPWTRLDEETTSLDLIEKL 201

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                 + T A         LA  ++A+ LN+ +  G+   + FG E +GL  + I   +
Sbjct: 202 K--AHSFTTCA---------LALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACD 250

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                P++    SLN++ +  +  WE    
Sbjct: 251 ITTIIPMSHQVDSLNVAASSAVAFWELFAR 280


>gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a]
 gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a]
          Length = 348

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 26/168 (15%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVI-- 68
            G V+ L       N+G V R+   F      LV P  R    +  A  +SA A   +  
Sbjct: 197 PGLVVALDGVTDPRNLGAVVRSAAAFGAHG-VLV-PERRAAGITAAAWKTSAGAAARLPV 254

Query: 69  ----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
               +  R   +  EA     F+    A             +A   ++E   +   V ++
Sbjct: 255 ARATNLARTLVSYAEA---GLFVVGLAA-------------DADTTIDELEMATDPVVLV 298

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL+       +  +  P+     SLN   A  + + E     
Sbjct: 299 IGSEGRGLSRLVEQRCDVTVRIPMAGAVESLNAGVAAGIALAEIARRR 346


>gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
          Length = 297

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + + +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|51595204|ref|YP_069395.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|51588486|emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 390

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q  AK  V+ L +     N+G + R   +F +  + L +P         R++   A+ + 
Sbjct: 235 QTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI- 293

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  +    +             R    +++       V   +      + ++ G+E
Sbjct: 294 -KAINADDFLSVLDTF----------RKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQE 342

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GLT+      +  +S        SLN+S A  +++ E    +    
Sbjct: 343 SDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG 390


>gi|13357828|ref|NP_078102.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|167971944|ref|ZP_02554221.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282436|ref|ZP_02690103.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|168308590|ref|ZP_02691265.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|170762254|ref|YP_001752351.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|11357050|pir||F82913 rRNA methylase UU268 [imported] - Ureaplasma urealyticum
 gi|6899239|gb|AAF30677.1|AE002123_10 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827831|gb|ACA33093.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902611|gb|EDT48900.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675800|gb|EDT87705.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186700642|gb|EDU18924.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 172

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADCV------ID 69
           I+L +P++  N G +AR          L LV P      +K      + D +      ++
Sbjct: 4   IVLFEPEIILNTGNIARMC--VGFDANLHLVRPYGFILDKKRF----HKDFIRASTNHLN 57

Query: 70  SVRVF--SNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +++++   +  E I   +     IY  T   R   K+    +   I+         NV +
Sbjct: 58  ALKLYEYDDFNEFINKNNISGDEIYFFT---RYGTKTPCDYQYQNII-------QHNVYL 107

Query: 124 IFGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +FG+E  G+ +  +    +  I  P +    SLNI+ +V + ++E +  
Sbjct: 108 VFGKESTGIDHNILKKYPHNWIRIPTSINLRSLNIANSVAMGIYEVVRQ 156


>gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
           20098]
 gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
           20098]
          Length = 333

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 57/160 (35%), Gaps = 18/160 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           SA+   I L      +N+G V R+   F    + L   R    +  A   SA A   +  
Sbjct: 176 SARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPV 235

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            RV  NL +AI  L     ++                       + E  F    + ++ G
Sbjct: 236 CRVV-NLTKAIEALKARGYYVVGLDGGGDKL-------------VGETGFETDPLVVVLG 281

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E  GL+       +AI   P++    SLN S A  + ++
Sbjct: 282 SEGKGLSRLVREACDAIAGIPISSQVESLNASVAAGISLY 321


>gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
          Length = 275

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 19/153 (12%)

Query: 27  NIGMVAR--AMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLK---EA 80
           N+G + R  A  N       L+NP    P   +A   S      +   ++        E 
Sbjct: 134 NVGAIFRSAAALNM---DAVLINPSCCDPLCRRAVRVSMGTVFQVPWGQLGETPADWPEK 190

Query: 81  IADLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
             D+       T A        +     +  + +E++     + I+ G E  GL    IA
Sbjct: 191 GMDILHSLGFKTAA--------MALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLAAGTIA 242

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +  +  P++    SLN++ A  +  W+  + 
Sbjct: 243 SCDYTVKIPMSHGVDSLNVAAASAVAFWQLGKQ 275


>gi|291287787|ref|YP_003504603.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884947|gb|ADD68647.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 169

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 15/163 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P++ +N G + R       ++L LV        +K    +        +V +   
Sbjct: 4   IVLYEPEIPQNTGNIGRFCVGTE-SRLILVGKLGFSLDDKHVKRA--GLDYWQNVNLMQL 60

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L+    +            +        K A+ V  E      N+ +IFGRE  GL  
Sbjct: 61  PSLEAFYEEF---------PNDKHPYAFLSKFASRVYTEIPHENDNLMLIFGRETSGLPE 111

Query: 135 E-EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             E    +++   P      S N+S +V L+ ++ +       
Sbjct: 112 SVEKDHPDSLFRIPATGKVRSFNLSNSVALVGFDIIRRRGFPG 154


>gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
 gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
          Length = 229

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 63/186 (33%), Gaps = 20/186 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +      ++L   +   N+  + R+       +  +V+ +    +  + +  +     
Sbjct: 15  LNHRMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHIVSLQGRTRTFNSTAQGSQKWVP 74

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           ++       ++ AI  L      +Y T     +        ++                 
Sbjct: 75  LND---HPTIETAIGSLKDRGFRVYGT-----HLGVEAKDYRDCDFT--------GPTAF 118

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           + G E+WGLT+    L +  +  P+  +  SLN+S A   +++E +     +     + +
Sbjct: 119 VLGAEKWGLTDRARDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQAAGTAPSQGE 178

Query: 184 NTPATK 189
              A  
Sbjct: 179 GLSADH 184


>gi|238784486|ref|ZP_04628495.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           bercovieri ATCC 43970]
 gi|238714655|gb|EEQ06658.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           bercovieri ATCC 43970]
          Length = 363

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R   +F +  + L +P         R++   A+ +        +    +   
Sbjct: 225 PHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI--KAINADDFLSVLDTF 282

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R    +++       V   +      + ++ G+E  GLT+      +  +
Sbjct: 283 ----------RKAGYTIVTTSSHKGVTLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSV 332

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           S        SLN+S A  +++ E    +  +
Sbjct: 333 SIGGTGRVESLNVSVATGILLAEWWRQNSAN 363


>gi|194695936|gb|ACF82052.1| unknown [Zea mays]
          Length = 209

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 22/164 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWP-SEKARSSSANADCVIDSV 71
           +++L   Q   N+G + R+   F    +  L    P    P +EKA  ++  A   +   
Sbjct: 47  ILVLDGIQDPGNLGTLIRSACAFKWDGVFLL----PACCDPFNEKAIRAARGASLQLP-- 100

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV---LNERIFS---GQNVGIIF 125
            + S       DLH +  T  R +       +  +A+     L+  +      +++ ++ 
Sbjct: 101 -IVSGT---WHDLHALV-TKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVL 155

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           G E  GL+ E +     +++ P+   F SLN+S A  + ++   
Sbjct: 156 GSEGNGLSAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 198


>gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1]
 gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii
           RW1]
          Length = 247

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 27/153 (17%)

Query: 15  PVIILVDPQLGENIGMVARAMWNF---NLTQLRLVNPRDGWPSEKARSS-SANADCVIDS 70
           P+++L       N+G V R+   F    +    +   R   P   A +  ++ A  ++  
Sbjct: 101 PLVVLDQVTDPHNVGAVLRSAAAFDAVGI----VTQDRHAPPESGALARSASGALELVPW 156

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           VRV  NL  A+ ++     +    +   R                  ++     + I+ G
Sbjct: 157 VRVV-NLARALDEIAEAGFWRIGLSGHARGT--------------LAQVMGDSRIAIVLG 201

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            E  G+     A  + +   P++P   SLNIS 
Sbjct: 202 AEGEGMRQNTEAHCDELAKLPISPKVESLNISN 234


>gi|226492595|ref|NP_001151868.1| LOC100285504 [Zea mays]
 gi|195650445|gb|ACG44690.1| trmH family tRNA/rRNA methyltransferase [Zea mays]
 gi|238006410|gb|ACR34240.1| unknown [Zea mays]
          Length = 220

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 27/148 (18%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA---IA 82
            N+G +AR+   F + ++ +V  RD      +   S  A   +   R F +L  A   + 
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDV-----SAFGSHGATSHLRF-RHFVSLALARAYLK 71

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D           R      +   + A  +    F  ++   +FG E  GL+ +E  + + 
Sbjct: 72  D----------ERGCDICGVEITDDAQPVTAHPFR-RSTAFLFGNEGTGLSQKECEICDF 120

Query: 143 IISFPVNPLFP----SLNISQAVLLMVW 166
            +  P    +     SLN++ A  +++ 
Sbjct: 121 FVYIP---QYGGGTASLNVTVAASIVLH 145


>gi|324998026|ref|ZP_08119138.1| RNA methyltransferase [Pseudonocardia sp. P1]
          Length = 280

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 9/181 (4%)

Query: 6   PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           P     A  P  + V        N+G V R         + L        + KA  +S  
Sbjct: 107 PLATALAGSPGFVTVCAGISDPGNVGTVVRVADAAGCDAVLLAGDTVDPHNGKAVRASTG 166

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   +   R   + +  +A       TT       +  L   EAA +L         V  
Sbjct: 167 SVFHLPLAR-DRDAQGVVAACRSAGLTTLVADGRGELDLHAPEAAPILA------GPVAW 219

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           I G E  G   +  A ++  +  P++    SLN++ A  + ++  +     ++ +    +
Sbjct: 220 ILGSEAHGPGPDVFAAADHRVRVPIHGRAESLNLATAAAICLYATVGARAGAAPRPPSAR 279

Query: 184 N 184
           +
Sbjct: 280 D 280


>gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
 gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
          Length = 270

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +  +    V +L   +   N G V R         + L +      + K   +S  +  
Sbjct: 107 DVLAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKCVRASVGSLF 166

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +        ++EA+A L               +  A  +      +R   G     +FG
Sbjct: 167 HLPVATGVP-IEEAVAGLR------GIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFG 219

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E WGL  E  AL++A++  P++    SLN++ A  + ++      
Sbjct: 220 NEAWGLPEETRALADAVVRVPLHGKAESLNLATAAAVCLYASARAQ 265


>gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043]
 gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    LV       S  A  ++   A+ V        +    +A+
Sbjct: 246 PHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLAE 302

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      R+   +++        +  +        I+ G+E  GL++      +  
Sbjct: 303 F----------RSAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVK 352

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        SLNIS A  +++ E    
Sbjct: 353 VSIGGTGKVESLNISVATGILLSEWWRQ 380


>gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 333

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G + R+   F    + L+       +EKA  ++  A   +    + S
Sbjct: 177 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARGASLQLP---IVS 233

Query: 76  ----NLKEAIADLHFIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
               +L   +             ++ + +     L+       L + + S +++ ++ G 
Sbjct: 234 GNWCDLHALVTRYGMKMFAGHPESSSDGSARTHALS-----KELADSLVS-ESLCLVLGS 287

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E  GL+ E +   + ++S P+  +F SLN+S A  + ++   
Sbjct: 288 EGNGLSEETVQACD-LVSIPMEGIFESLNVSVAGGIFLFMLQ 328


>gi|295394712|ref|ZP_06804928.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972445|gb|EFG48304.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 293

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 32/170 (18%)

Query: 3   PYAPQLQNSAKGPVII-----LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEK 56
           P+ P +    +   ++     LVD     N+G + R++         LV PR   P   +
Sbjct: 128 PHLPSVAEVVRDTSVVVIIEDLVD--HT-NVGAIFRSVAALG-ADAVLVTPRCADPLYRR 183

Query: 57  ARSSSANADCVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110
           A   S      +   R+          ++A     F+ A            +   E AI 
Sbjct: 184 AIRVSMGTVFQVPWTRIDPWPESIDTFQDA----GFVVA-----------GMTLGEGAIT 228

Query: 111 LNERIFSG-QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           L+E +    + + ++FG E  GLT       +  ++ P+     SLN++ 
Sbjct: 229 LDELVAEDYEKLALVFGSEGPGLTQATEQRLDRRVTIPMMGGVDSLNVAA 278


>gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14]
 gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14]
          Length = 286

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 16/175 (9%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           TP+A  +  +    V +L   +   N G V R         + L +      + KA  +S
Sbjct: 112 TPFA-DILAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRAS 170

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117
             +   +        +++A+A L          ++    +LA   A     +        
Sbjct: 171 VGSLFHLPVAVGVP-VEQAVAGL----------KDAGVRILAADGAGEHDLDDELDDNTM 219

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G     +FG E WGL  +  AL++A++  P++ +  SLN++ A  + ++      
Sbjct: 220 GGPTAWVFGNEAWGLPEDTRALADAVVRVPIHGMAESLNLATAAAVCLYASARAQ 274


>gi|254690454|ref|ZP_05153708.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 6 str.
           870]
 gi|254694943|ref|ZP_05156771.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 3 str.
           Tulya]
 gi|256258710|ref|ZP_05464246.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 9 str.
           C68]
 gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 297

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + + +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 285

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF--SNLKE 79
           Q   N+G + R+   F  T   L+  +   P + K    S+ +   +  V+V   + L++
Sbjct: 145 QDPGNLGTILRSAEAFGATG-VLIGDKTASPWNPKVIRGSSGSVFRLPVVKVEWPAALEQ 203

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             A    I AT++                  L E  F+G  + ++ G E  G+  + +A 
Sbjct: 204 LRAKGVQILATSS-------------HKGEPLPEVDFTGPTI-VLIGGEGAGVPRDVLAS 249

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  ++ P +P   SLN   A  ++++E     
Sbjct: 250 VDGTLAIPHSPKVESLNAGIAASIVMYEAARQR 282


>gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 220

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 23/166 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +  +   G  +IL   Q   N+G + R    F +T + L        +      ++ A 
Sbjct: 63  EEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGAL 122

Query: 66  CVIDSVRVF------SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             +   ++F      + L+    + ++I +T+ R                    ++    
Sbjct: 123 SFL---KIFTVKNLANTLELLKENGYWIVSTSDR--------------GTEDWSKLPDLN 165

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            + I+ G E  G+    +  S+ ++  P+     SLN++ A  +++
Sbjct: 166 ELVILMGNEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVL 211


>gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
 gi|254696574|ref|ZP_05158402.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731487|ref|ZP_05190065.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
           292]
 gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
 gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 297

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + + +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
           hongkongensis HLHK9]
 gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
           hongkongensis HLHK9]
          Length = 252

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 15/163 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      +    ++ P+D     +      +  A   +  ++V +
Sbjct: 100 ILDGITDPHNLGACLRVADAMGVH--AVLAPKDRSAGLNATVSKVACGAAETVPYIQV-T 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL   + DL          ++    +               + +++  + G E  G+   
Sbjct: 157 NLARTLRDL----------KDRGIWIAGTDMDGQSDLYHFEAPESLAWVMGSEGEGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                + ++S P+     SLN+S A  +++ E      +++E+
Sbjct: 207 TREHCDLLVSIPMFGTVESLNVSVATGMVLAETRRQHTLAAER 249


>gi|255635868|gb|ACU18281.1| unknown [Glycine max]
          Length = 324

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNF---NLTQLRLVNP-RDGWPSEKARSSSANADCVIDSV 71
           +++L   Q   N+G + R+   F    +  L    P      +EKA  +S  A   +  V
Sbjct: 170 ILVLDGIQDPGNLGTLLRSAVAFRWDGVFLL----PGCCDPFNEKALRASRGASFQLPVV 225

Query: 72  R-VFSNLKEAIADLH-FIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGR 127
              +++L+    +      A    +    K V  L+P            S   + ++ G 
Sbjct: 226 SGSWNHLESLKKEFQMRFLAGHPEHEGLVKPVSSLSPSFC------DSLSDTPLCLVLGS 279

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E  GL+ + +     ++S  +   + SLN+S A  + ++   
Sbjct: 280 EGSGLSEKSLQTC-ELVSIAMTGEYESLNVSVAGGIFLYMLQ 320


>gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 317

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 10/169 (5%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A    +     ++ L       N+G V R++  F      +V      P  +A   +A 
Sbjct: 158 AAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAG 210

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A     S    +    A A  +   A  +  +     V    +    + +    G  + I
Sbjct: 211 AWKT--SAGTAARTPVARA-TNLTRALESYQKAGLTVVGLAADGETEVGDLEALGGPLVI 267

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  GL+       + ++  P+     SLN   A  ++++E  +  
Sbjct: 268 VVGSEGKGLSRLVGETCDYLVRIPMPGGAESLNAGVAAGVVLYEAAKRR 316


>gi|218531683|ref|YP_002422499.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
 gi|218523986|gb|ACK84571.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
          Length = 269

 Score = 55.8 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 14/175 (8%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P    L   A  P ++  LV     +N+G + R    F    + L          KA   
Sbjct: 107 PSPESLVPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SA A   + S R  S    A+ DL       A         L P  +     + +     
Sbjct: 167 SAGAALTVPSARAPS--GAALLDL-------AERHALTPLALTP--SGSETLDALEPPAR 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             ++ G E  GL    +  +   +   + P F SLN++ A  + +       +  
Sbjct: 216 TLLLLGTEGPGLPESLMVRARR-VRIAMAPGFDSLNVATAGAIALHHLAGRRLAG 269


>gi|260752590|ref|YP_003225483.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551953|gb|ACV74899.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 152

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P +  N+G + R    F +  + ++ P     S++A   +      +D  ++  
Sbjct: 2   RIALFQPDIAGNVGTILRTAACFGVG-VDIIEPCGFAFSDRALKRAG-----MDYAKIAP 55

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                +    +    +AR     + VL      I L E  F   ++ ++FG E  G  + 
Sbjct: 56  P----VRHNDWNSFLSARPE---RRVLLTTAGDIPLPEMTFQPDDI-LLFGSESAGAPDF 107

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               ++  +  P+   F SLNI+ +  + + E +  +
Sbjct: 108 VHQAASHQVRIPLLADFRSLNIAVSAGIALAEALRQT 144


>gi|163852857|ref|YP_001640900.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|163664462|gb|ABY31829.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
          Length = 269

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 14/175 (8%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P    L   A  P ++  LV     +N+G + R    F    + L          KA   
Sbjct: 107 PPPESLIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SA A   +   R  S    A+ DL       A         L P        + +     
Sbjct: 167 SAGAALTVPFARAPS--GAALLDL-------AERHALTPLALTP--GGSETLDALEPPAR 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             ++ G E  GL    +A +   +   + P F SLN++ A  + +       +  
Sbjct: 216 ALLLLGTEGPGLPESLMARARR-VRIAMAPGFDSLNVATAGAIALHHLARLRLAG 269


>gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 262

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 20/155 (12%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P+   NIG + R     NL  + + NP+    +     SS           +F+      
Sbjct: 122 PEKPGNIGALLRTADAANLDAVIIANPKSDLYNPNIVRSSVG--------CLFTT----- 168

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN----VGIIFGRERWGLTNEEI 137
                   TT       K        A + N   +  Q+      ++ G E  GLT E  
Sbjct: 169 ---QIATGTTQEIITYLKENKINFYCATLQNATPYHTQDYTPPTALVVGTEATGLTQEWR 225

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   I  P+     S+N+S A  ++++E     
Sbjct: 226 NNATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260


>gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium
           profundum SS9]
 gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 245

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 19/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+ S    ++IL       N+G   R         + +   R    +  A   +  A  V
Sbjct: 90  LEGSENPLLLILDGVTDPHNLGACLRNADAAGAVAVIIPKDRAAQLTATASKVACGAAEV 149

Query: 68  IDSVRVFSNLKE---AIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +  VRV +NL     A+ D   +I  T                 A            + I
Sbjct: 150 MPLVRV-TNLARTMRALQDKGVWIVGTAG--------------EATHDIYHSKLTGPLAI 194

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 195 VMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
           DSM 15981]
 gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
           DSM 15981]
          Length = 279

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 12/170 (7%)

Query: 4   YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
             P  +N      +++++  Q   N+G + RA     +T L +        + K   S+ 
Sbjct: 115 SVPVGKNPPAPACLMILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTM 174

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +  V    +L  A+A +      +A  R     +           ++     N+G
Sbjct: 175 GSILRVPFV-YVDDLSAALAQIK-----SAGVRLFAAHL-----KGTNNYDQEDYTGNIG 223

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + G E  GLT E  A+++  I  P+     SLN + A  ++++E     
Sbjct: 224 FLIGNEAAGLTEETAAMADCYIKIPMAGQVESLNAAVASSVLMFEAARQR 273


>gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 253

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIA 82
             N+G + R         + +   R    +      S  A   +   RV +  +  EA+ 
Sbjct: 114 PHNLGSILRTADACGAHGIIIPKHRAAGVTPTVAKISTGAIEYLPVARVTNMTQTIEALK 173

Query: 83  D-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           +   +++ T               +        + +   + ++ G E  G++       +
Sbjct: 174 EKGVWVFGT---------------DMEGQDYWDMDASLPIAVVIGNEEKGISPRVKKALD 218

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM 169
            +++ P+     SLN S A  L+++E  
Sbjct: 219 GVLTIPMRGHVQSLNASVAAALVMYEVY 246


>gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
           14484]
 gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
           14484]
          Length = 248

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 14/165 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFN-LTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +L      +N+G + R       +  L L   R    ++    +S+ A   +   RV S+
Sbjct: 96  VLDHLTDPQNVGNLLRTCEVLGGVGAL-LPKDRSCPINQTVIKASSGAVFHLLLSRV-SS 153

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+ ++ +   +             V+   E       ++       ++ G E  G++   
Sbjct: 154 LRRSLENFKRVGG---------WIVVV--ERGGKDIRQVDIPLPCALVLGSEGEGVSKSV 202

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           + +++ I+S P+     SLN+S A  + +WE ++  +       +
Sbjct: 203 MEIADLIVSIPMGGKITSLNVSSAGAIAIWETIKKHLPPHSHPQE 247


>gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
           16841]
 gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 69/178 (38%), Gaps = 30/178 (16%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKA 57
           P A ++  +A+   ++  +V+P    N+G + R  A  N       L+      P   +A
Sbjct: 123 PSAEKVCKNARRIAVLENVVNPT---NVGAIFRSAAALNM---DAVLLTSACSDPLYRRA 176

Query: 58  RSSSANADCVIDSVRVFS-NLK------EAIADLHF-IYATTARNRNNFKSVLAPKEAAI 109
              S      +    + + N+       + + +  F   A   RN +             
Sbjct: 177 IRVSMGTVFQVPWTYIENKNVSWPQGGMDLLHEYGFKTVAMALRNDSVRID--------- 227

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             +E++ + + + II G E  GL  E +A  +  +  P++    SLN++ A  +  WE
Sbjct: 228 --DEKLHAEEKLAIILGTEGDGLAAETMADCDYTVKIPMSHGVDSLNVAAASAVAFWE 283


>gi|163754906|ref|ZP_02162027.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
 gi|161324973|gb|EDP96301.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
          Length = 171

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 63/152 (41%), Gaps = 12/152 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R    F + ++      D  P   +  + ++ A       +V     E   D+H
Sbjct: 30  NIGSLFRICDAFGVEKIIFCG--DNIPVFGRRMTKTSRATE-----KVVP--FEITTDIH 80

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
            +  +  ++       L   E +  ++   FS  + + ++ G E +G+  E I  S+ ++
Sbjct: 81  AVV-SKLKDHGYTIISLEITENSQSIHTIDFSKYEKIALVIGDENFGVNPETIYESDVVM 139

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              +     S+N+ QA  ++++E     +V+ 
Sbjct: 140 HIDMFGQNSSMNVVQATNIVLYEITRQHLVAK 171


>gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
           hominis ATCC 15826]
 gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
           hominis ATCC 15826]
          Length = 243

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 59/163 (36%), Gaps = 11/163 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  +++L   Q   N+G   R+     +  + + N R    +      +  A  ++   R
Sbjct: 92  KPLLLVLDSIQDPHNLGACLRSAAAAGVHAVLIPNSRAADVTPVVEKVACGATEILPLFR 151

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V SNL+  +           R +     V+     A            + +I G E  G+
Sbjct: 152 V-SNLRREVE----------RMQRQGIWVVGGAGGAAQSLYATDLTVPLAVIVGNEGEGI 200

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +      + ++  P+     SLN+S A  +M++E     + S
Sbjct: 201 RHGLREQCDFLVQIPMAEGMESLNVSVACGVMLFEARRQRLFS 243


>gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
           2AN]
 gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
           2AN]
          Length = 248

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G   R           ++ P+D      A  +  ++ A   +    V +
Sbjct: 104 VLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVASGAAETMPYFMVTN 161

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L E      +   T+              + A     ++     V ++ G E  G+
Sbjct: 162 LARTLGELKERNIWCIGTS--------------DDAPKTIYQVDLKGPVALVLGAEGDGM 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++S P+     SLN+S A  + ++E +   
Sbjct: 208 RQLTRKTCDELVSIPMKGAVESLNVSVASGVCLYEALRQR 247


>gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           sanguinis SK408]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTTG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|223038607|ref|ZP_03608900.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
           RM3267]
 gi|222880009|gb|EEF15097.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
           RM3267]
          Length = 226

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 18/150 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL       NIG + R         + +V        E    +S+ A    D   V    
Sbjct: 87  ILYGLSDVGNIGAIVRTAHALGCGGVVIVA--KNLAMEGVLRASSGAAYETDIALVEDGL 144

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L   +  + F    TA    N   V   +               V ++ G E  GL  +
Sbjct: 145 SLLNELKQVGFKIYATASGGKNAHEVKFDR--------------KVALVMGSEGEGLHKK 190

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +  S+ I+   +   + SLN+S A  ++ 
Sbjct: 191 VLTKSDEIVGIKMKNDWDSLNVSAAFAILC 220


>gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 247

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++LV  + Q   N+G   R+      T + +   +    +   R +SA A 
Sbjct: 91  LVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            +I  V   +NL   + DL     +IY                   A     ++    N+
Sbjct: 151 DLIP-VVAVTNLSRCLKDLQKQGVWIYGLAG--------------EATASLYQLDLKGNI 195

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  GL        + ++  P+     SLN+S A  + ++E +   
Sbjct: 196 ALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246


>gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
           W1219]
 gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
           W1219]
          Length = 237

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 51/166 (30%), Gaps = 18/166 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +     G +++L       N+G + R         +     R    +      S  A  
Sbjct: 81  SIPKGKDGLIVMLDGIVDPHNLGAILRTCDAVGADGVIFKKDRSVGLNATVAKVSVGAIQ 140

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +    V +    ++      +++  T    ++                  +       +
Sbjct: 141 TVKCASVTNLSQTIEWLKKRGYWVVGTAMEGKDYR---------------SLKYDYPTVL 185

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           + G E  G+++  +   +  +  P+     SLN S +  ++++E  
Sbjct: 186 VIGNEGKGISSLVMKHCDYRVHLPMVGKISSLNASVSTGILLYEIY 231


>gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
 gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
          Length = 246

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             +G++ G E  G++       +   S P+N    SLN S A  ++ +E +   ++ 
Sbjct: 190 GPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIVRQRLLK 246


>gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK36]
 gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative
           [Streptococcus sanguinis SK36]
 gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
 gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
          Length = 260

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 19/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q   N+G + R+     +  + L +   D W S KA      A  ++  V   ++L+   
Sbjct: 122 QDPGNLGSMLRSAAAAGVEVVYLSLGCADAW-SPKALRGGQGAQFILPIVER-ADLENVT 179

Query: 82  ADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                   ATT    + ++  L P                   + G E  GL+   I  +
Sbjct: 180 RGFAGQTLATTLMGESLYEMDLQP---------------PTAFMIGNEGTGLSETLIKAA 224

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +  +S P+     SLN + A  + ++E      V
Sbjct: 225 SRQVSIPMAGQVESLNAAAATAICLFERSRQKAV 258


>gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 246

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             +G++ G E  G++       +   S P+N    SLN S A  ++ +E +   ++ 
Sbjct: 190 GPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIVRQRLLK 246


>gi|33601597|ref|NP_889157.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50]
 gi|33576033|emb|CAE33113.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50]
          Length = 257

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L        ++    Q   N+G + R      + ++ L        S K   S   A 
Sbjct: 103 PALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAH 162

Query: 66  CVIDSVRVFSNLK-EAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +    +  +L  EA+    D+  +  T AR+ + + + L                   
Sbjct: 163 FALH---IHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLP---------------ACC 204

Query: 122 GIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENS 172
             +FG E  G+    +  +   +  P  +    SLN+  A  + ++E     
Sbjct: 205 AWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQR 256


>gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|256832412|ref|YP_003161139.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685943|gb|ACV08836.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 282

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+     +    +VN         +A   S      +   R  +NL E +  LH
Sbjct: 148 NLGAIIRSCAALGVDG-IIVNHTSADPLYRRAIRVSMGTVFQVPWTR-ANNLIEVLDLLH 205

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNEEIALSNAII 144
             + TTA         LA  + AI L++        V  +FG E  GL++  +A  + ++
Sbjct: 206 EAHYTTA--------ALALSDNAITLDQFNAENHDKVAFLFGNEGHGLSDRTLATVSRVV 257

Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
           + P+     SLN++    L+ +
Sbjct: 258 TIPMAGDVDSLNVAATSALVFY 279


>gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 248

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+    +N G + R      +  +     R          +SA A   ++ V +     
Sbjct: 105 LVE--DPQNFGSICRIADAAGVHAIIYQKKRSVGIVPSVWKASAGAVWHVNLVEI----- 157

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
               ++ +   T    + +  ++   +  A  +       Q +G+I G E  G+    IA
Sbjct: 158 ---NNIKYAIKT---LKEHNITIYGAEAQAKDVFWESDFTQPLGLIVGSEGKGIRQTVIA 211

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L + +I  P+     SLN+S A  L+ +E +   
Sbjct: 212 LCDKVIKIPMRGTINSLNVSVASALITFEVLRQR 245


>gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M]
 gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M]
          Length = 279

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           EN+G + R      +  +   +        +A   S     ++   R      E +A   
Sbjct: 139 ENLGSIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVA--- 195

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                  + R      L PK  A  L E       Q V ++ G E  GLT   + +S+  
Sbjct: 196 ------LKERGFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLR 249

Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167
           +  P++    SLN++ A  L  +E
Sbjct: 250 VRIPMSRGTDSLNVATAAALAFYE 273


>gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
 gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
          Length = 261

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +     N+G + R         + +   R    S     SSA A   +   RV   
Sbjct: 112 ILLDEVHDPHNLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGAVEYVPVARVANI 171

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +   E +       A              P    +  + R+     V ++ G E  GL  
Sbjct: 172 ARTIELLKGKGLWVAGA-----------DPDGREVYWDARL--DGPVALVIGGEGKGLGR 218

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + ++  P++    SLN S A  L+ +E +   
Sbjct: 219 LVKEKCDVLVRLPMSGRVNSLNASVAAALLSYEVVRQR 256


>gi|78066783|ref|YP_369552.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383]
 gi|77967528|gb|ABB08908.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383]
          Length = 260

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 18/169 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
             L        ++L   Q   N+G + R+     +       P   +  S K   S   A
Sbjct: 105 QPLPARVTQSSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMGA 163

Query: 65  DCVIDSVRVFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             ++    +  +++  A+A+                 V                   V  
Sbjct: 164 HFLLS---IHEDVEAGALAE------------RLDVPVALTDSHGAQAVYDCDLSGPVAW 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 209 VFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica
           PV-4]
 gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica
           PV-4]
          Length = 246

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 15/158 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      +    +V PRD     +      +  A  V+   +V  
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PRDNSVGLTPTVSKVACGAAEVVPLFQVT- 157

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V A  EA   L +    G  + I  G E  GL   
Sbjct: 158 ---------NLARTMKALQEKGVWIVGAAGEAEHDLYKADLKG-PIAIAMGAEDKGLRRL 207

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                +++ S P+     SLN+S A  + ++E +   +
Sbjct: 208 TRESCDSLASIPMAGSVSSLNVSVATGICLFEAVRQRL 245


>gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 282

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL   +   N+G + R      +  + +   R    +     +S  A   +  VRV +
Sbjct: 137 ILILDGIEDPYNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKASTGAIEHVPVVRVTN 196

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               +++      +++ T  +  +        ++          +   + I+ G E  G+
Sbjct: 197 LTQTIEQLKERGVWVFGTDMKGTDY-------RQW--------NTKGPIAIVMGNEGKGV 241

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + +I+ P+     SLN S A  LM++E   + 
Sbjct: 242 SRIVKDAVDEMITIPMTGHVQSLNASVASALMMYEVFRSR 281


>gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK187]
 gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK137]
 gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK187]
 gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK137]
 gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL013PA1]
 gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL074PA1]
 gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA1]
 gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA2]
 gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL083PA1]
 gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL025PA1]
 gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL059PA1]
 gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL063PA2]
 gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL007PA1]
 gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL056PA1]
 gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL086PA1]
 gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA4]
 gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA1]
 gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA3]
 gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL067PA1]
 gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL027PA1]
 gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA1]
 gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL082PA1]
 gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA1]
 gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL053PA1]
 gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL045PA1]
 gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA1]
 gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL053PA2]
 gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL078PA1]
 gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL038PA1]
 gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL059PA2]
 gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL046PA1]
 gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL030PA2]
 gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL096PA2]
 gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL097PA1]
 gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL043PA1]
 gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL043PA2]
 gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA3]
 gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL083PA2]
 gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL092PA1]
 gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA1]
 gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL025PA2]
 gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL099PA1]
          Length = 318

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 10/171 (5%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   Q    G V+ L       N+G + R+   F    + + + R    +  A  +SA A
Sbjct: 157 AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 216

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I    + +NL +A+    F  A            LA +  +   +   F G  V I+
Sbjct: 217 AARIPVA-MATNLNQALG--KFAAA------GWMIVGLAGEADSDFASAPGFDGPLV-IV 266

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G E  GL        + + S P++    SLN S A  + ++E        
Sbjct: 267 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 317


>gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEA 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
 gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+T + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                      +   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKHAGFWIFGT--------------DMNGTPSTKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 243

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P L ++ + P ++IL       N+G   R      +    +V PRD     +   +  + 
Sbjct: 86  PALLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  + V +             A T R     N   V    EA   L +   +G  
Sbjct: 144 GAAETVPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242


>gi|88857330|ref|ZP_01131973.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           tunicata D2]
 gi|88820527|gb|EAR30339.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           tunicata D2]
          Length = 175

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 26/152 (17%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF-- 74
           LV+P+   N+G V RA           V+     G   ++AR  + +   V + + +   
Sbjct: 14  LVNPKSPTNVGAVMRAA---GCYD---VDSVFYSGVRFDRARKFATDTKNVSEHIPLIGI 67

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++LK+A+ +   + A                        R     N   +FG E   L  
Sbjct: 68  ADLKQAVPEGAKVIA-------------VELIEGATALTRYQHPDNAFYVFGPEDGSLGK 114

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + +   + ++  P       +N++  V ++++
Sbjct: 115 DILKWCDDVVYIPT---IGCMNLAATVNVVLY 143


>gi|260063491|ref|YP_003196571.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
 gi|88782935|gb|EAR14109.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
          Length = 273

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 17/170 (10%)

Query: 6   PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62
             L+   K P+I LV   P+   N+G + R     +L    +V    G   +     SS 
Sbjct: 110 QDLELEGKNPLI-LVAQAPEKPGNLGALLRTADAASL-DAVIVADLKGDLYNPNVIRSSV 167

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
                +   +  ++ +EA++ L       AR+     +V A      V  ++        
Sbjct: 168 GCLFTVPVAQ--ASTEEALSYLK------ARD----IAVYAASLGGSVRYDQADYLGASA 215

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I  G E  GLT      + A +  P+     S+N+S A  ++++E     
Sbjct: 216 IAVGTEATGLTEAWTRQAEACVEIPMAGAIDSMNVSVAAAVLLFEARRQR 265


>gi|329935710|ref|ZP_08285515.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329304801|gb|EGG48674.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 266

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
             + PV++L +P+   N G V R    F  T +      D W     R  +      +  
Sbjct: 124 PRRAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----LHF 178

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 +  A               +  +  +   +       R+       + FG ER 
Sbjct: 179 ATAVERMDVA---------------DLPEGPVYALDPEGEDIRRVRLPDEALLAFGSERS 223

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           GL+ E  A ++ +++ P+ P   S N++ +V + ++     ++
Sbjct: 224 GLSPELRARADRLVALPMRPQVSSYNLATSVGMALFHWSAGAV 266


>gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49]
          Length = 260

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 18/170 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           A  L        ++L   Q   N+G + R+     +       P   +  S K   S   
Sbjct: 104 AQPLPERVTQSSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMG 162

Query: 64  ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A  ++    +  ++  +A+A         AR       V                   V 
Sbjct: 163 AHFLLS---IHEDVAPDALA---------AR---LDVPVALTDSHGAQAIYDCDLSGPVA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 208 WVFGNEGAGVSAFWRDAAAHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 519

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 18/193 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           ++    Q + +   PVI++        N+G + R         L +  P+       A  
Sbjct: 321 LSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTAGALGAHGLVI--PQRRAVGVTAAV 378

Query: 60  SSANADCVIDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +   A   ++S    RV  NL  A+ +L             F    A  EA   ++E  F
Sbjct: 379 AKVAAGA-LESFPVARVV-NLNPALEEL---------KDAGFWIYGAAGEAKQSIHETSF 427

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           SG  V ++ G E  GL+       + +IS P+     SLN S A  ++++E        +
Sbjct: 428 SG-PVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLYEVSRQRQQLT 486

Query: 177 EKNVKEQNTPATK 189
                  +  AT 
Sbjct: 487 HHLEGIADNGATA 499


>gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
 gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
          Length = 249

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62
            L   +K PV+IL+        N+G   R+     +    L+ P+D   S        + 
Sbjct: 88  TLLERSKKPVLILILDGITDPHNLGACLRSADATGV-DFVLI-PKDKSASITPVVSKVAC 145

Query: 63  NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   I  VRV +NL  A+        +I+                   A  L   +   
Sbjct: 146 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAEHLLYAMDCS 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            N+ ++ G E  GL        + + S P+     SLN+S A  + ++E +       E
Sbjct: 191 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 249


>gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA2]
 gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL046PA2]
 gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA1]
 gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA2]
 gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL063PA1]
 gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA3]
 gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA2]
 gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL072PA2]
 gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA2]
 gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA3]
 gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL027PA2]
 gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA3]
 gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL072PA1]
 gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL096PA3]
 gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL013PA2]
 gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL020PA1]
 gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266]
          Length = 318

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 10/171 (5%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   Q    G V+ L       N+G + R+   F    + + + R    +  A  +SA A
Sbjct: 157 AAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGA 216

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I    + +NL +A+    F  A            LA +  +   +   F G  V I+
Sbjct: 217 AARIPVA-MATNLNQALG--KFAAA------GWMIVGLAGEADSDFASAPGFDGPLV-IV 266

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G E  GL        + + S P++    SLN S A  + ++E        
Sbjct: 267 VGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAARMRGAK 317


>gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 248

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 55/153 (35%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R      +  + +   R    +     +S  A   +   RV    
Sbjct: 103 ILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLV 162

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +KE      +++ T  + R+                        V ++ G E  G+++
Sbjct: 163 QTVKELKNRGVWLFGTDMKGRD----YRTWDAHGA-----------VALVIGNEGKGISS 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 + +++ P+     SLN S A  L++++
Sbjct: 208 LLKKNCDEMLTIPMVGHVQSLNASVAAGLLIYQ 240


>gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
 gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
          Length = 261

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 19/152 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRVFSNLKE 79
               N G + R    F +  +  +N  D + + K   ++  A     +ID  ++   +KE
Sbjct: 126 SDPGNFGTIIRTANAFGINDILTINCVDKY-NSKVLRATMGAIFRTNIID-CKI-EKIKE 182

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             +  + + +TT    + F            L E  F G+N+ ++ G E  G++ E + +
Sbjct: 183 LQSGGYRLISTTLSKNSKF------------LEEFTFDGKNI-VVMGNEANGISAEMLKI 229

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           SN  +   ++    SLN+S A  +++++  +N
Sbjct: 230 SNNHLKIDMDNSMESLNVSIAAAIIMYKIFKN 261


>gi|297565069|ref|YP_003684041.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
 gi|296849518|gb|ADH62533.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
          Length = 274

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 35/180 (19%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-------- 57
            + + S    +++ V  +   N+G V R+       ++ LV       S +         
Sbjct: 108 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAG-AEVVLVAGGVDLYSPQVIRNSTGVV 166

Query: 58  ---RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
              R+ +A+   V+D ++   NL         + ATT            P   A+     
Sbjct: 167 FSLRTLAASESEVLDWIKQH-NLP--------LVATT------------PHAEALYWEAN 205

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +     V I  G E  GL    +  +   +  P+     SLN+S +  L+++E +   ++
Sbjct: 206 LRP--PVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALRQRLL 263


>gi|197105361|ref|YP_002130738.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
 gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
          Length = 261

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 12/150 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R         + LV       S +A  ++  +   +   R    
Sbjct: 120 VALHRVRDPGNLGTIVRTADAAGCGGVILVGECCDPYSVEAVRATMGSVFAVPLSRC--- 176

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             EA           A  +    SV+    +A   +      +   I+ G E+ GLT E 
Sbjct: 177 -GEA--------EFAAWRKGWPGSVVGTLLSATHSHASADYRKPALILMGNEQQGLTPEM 227

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            AL +  +  P+     SLN+S A  +M++
Sbjct: 228 AALPDLNVKIPMRGRADSLNLSVATGIMIY 257


>gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 263

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 13/156 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V      N G + R         + L        + K   +SA +   +       +L
Sbjct: 112 VAVQISEPGNAGTLIRLADAMGAAGVLLAGHSVDPYNGKCLRASAGSIFSVPVAA-APDL 170

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGRERWGLTNE 135
           +EA+A +          R     +LA      V  +R      +    +FG E  GL + 
Sbjct: 171 REAVAAV----------REAGLQLLATTVDGEVRLDRAGELLAKPTAWLFGPESHGLPSA 220

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             A ++  +  P+     SLN++ A  + +++    
Sbjct: 221 VAAAADHRVCIPMAGGAESLNVASAAAICLYQSARA 256


>gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           vestibularis F0396]
 gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           vestibularis F0396]
          Length = 247

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+I IL       N G + R      +T + +   R    +     +S  A   I   
Sbjct: 98  ENPLILILDGLNDPHNFGSILRTADATQVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIA 157

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV +    L +      +++ T                     ++   +G  + +I G E
Sbjct: 158 RVTNLSQTLDKLKESGFWVFGT--------------DMDGTPSHKWNTAG-KLALIIGNE 202

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++       + +I+ P++    SLN S A  ++++E   N +
Sbjct: 203 GKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNRL 247


>gi|298253912|ref|ZP_06977499.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532055|gb|EFH71030.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 302

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA 82
             N G + R         +  V+      + K   S+A +   +  V+  V    + A  
Sbjct: 152 PGNAGAIIRVADVAGCDAVVFVDDCVSRWNAKLVRSTAGSLFHLPVVQLSVQDWFECAAK 211

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A      +  K V  PK    +L        ++ I+FG E  GL  E +   + 
Sbjct: 212 ANIRVIAADIYGTDKIKPVPFPK----ILVNSEVISSSLAILFGNEARGLPKEVLQQVDD 267

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
           I   P+     S+N++ +  +M+
Sbjct: 268 ISIIPIYGKAESMNLATSAAVML 290


>gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2]
          Length = 273

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 25/166 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN----------AD 65
           ++IL +     N+G + R+    N+  + L          ++   S             D
Sbjct: 122 IVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGD 181

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
               +  +   LKE +   +   A TAR+               + +E + S   + II 
Sbjct: 182 DTWPADGMHR-LKE-LGYKNVAMALTARS-------------VSIDDEALMSEDKLAIIL 226

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  GL  E I   +  +  P+     SLN++ A  +  W+  + 
Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAKR 272


>gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           wasabiae WPP163]
 gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           wasabiae WPP163]
          Length = 243

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P + ++ + P ++IL       N+G   R      +    +V PRD     +   +  + 
Sbjct: 86  PAMLDNIETPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  + V +             A T R     N   V    EA   L +   +G  
Sbjct: 144 GAAETVPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242


>gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1]
          Length = 233

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           +IL + +   N+G + R      +  + +   R    ++    +S  A   +   RV + 
Sbjct: 85  VILDEIEDPHNLGSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNV 144

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + +      +I+ T  +  +                    +   V I+ G E  G++
Sbjct: 145 NNTIDKLKKANFWIFGTDMKGTDYTDW---------------NADGPVAIVIGNEGKGIS 189

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            +     + +++ P+     SLN S A  L++++
Sbjct: 190 AQTKKKVDQMLTIPMIGHVQSLNASVAAALLIYQ 223


>gi|71894579|ref|YP_278687.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
 gi|71851367|gb|AAZ43976.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 178

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 15/160 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L  P++  N   + R+ +     +L ++ P       K    +A    + D    V  
Sbjct: 4   IVLYQPEISPNTANIIRSCYALG-AKLHIIKPLGFDLHPKYFKRAAAGRLLSDIRHEVHD 62

Query: 76  NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +      + +  Y T    R   KS        +         +N+  +FGRE  G+
Sbjct: 63  SYLDFYNKYKNANVFYIT----RYGLKSY-----DKVDFKNEYSKDKNIFFMFGRESTGI 113

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E +    +  +  P+     S+N++  V ++ +E M  
Sbjct: 114 DKEILKNNIDKCLRIPMVSKMRSINLANTVCIVGFEFMRQ 153


>gi|108804143|ref|YP_644080.1| tRNA/rRNA methyltransferase SpoU [Rubrobacter xylanophilus DSM
           9941]
 gi|108765386|gb|ABG04268.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM
           9941]
          Length = 223

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 55/180 (30%), Gaps = 35/180 (19%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFN--------LTQLRLVNPRDGWPSEK 56
           +P+   +    V++L   Q   N+G V R+   F            L          + K
Sbjct: 69  SPEELLARGRIVVLLEGVQDPGNVGTVIRSAHAFGAGVALSRGCADLY---------NPK 119

Query: 57  ARSSSANADCVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
              S+  +   +   R    L   E      F  A  A           P          
Sbjct: 120 TVRSTMGSLFRVPVARELDPLAFLELARGAGFGLA-AATPGGGEPPGSMP---------- 168

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
              G N+ +  G E  GL+   +      +S P     PSLN + A  ++++E     + 
Sbjct: 169 ---GGNLVVAVGSEGAGLSPGVVRACGVRVSIPSRA--PSLNAAVAASILLYEAYRRVLT 223


>gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1]
 gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 242

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNISQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 270

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++    Q   N+G + R    F    +          + K   ++  +   +  +R   
Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185

Query: 76  N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L + + D  F              V  P     +   +I   +   ++ G E  G++
Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKIVPDKRFCVVIGNESEGVS 232

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    ++   I  P+     SLN + A  ++++E  + 
Sbjct: 233 DSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950]
          Length = 268

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 17/165 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRV 73
           + V+     N G + R         + L    V+P +G      +   A+A  +     V
Sbjct: 117 VAVEIGEPGNAGTLIRLADAMGAAGVILGGRSVDPYNG------KCLRASAGSIFCVPVV 170

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +   +A+A +  +     R                +       G+    +FG E  GL 
Sbjct: 171 VA--PDALAAVDAV-----RAAGLQALATTVDGERRLDEAGELLGRPTAWLFGPESHGLP 223

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +E  + ++  +  P++    SLN++ A  + +++      + +  
Sbjct: 224 SEIASAADHRLRIPMSGGAESLNVASAAAICLYQSARALKLPTRP 268


>gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
 gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
          Length = 240

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+   F++  + L  P+D  P+E  + + +A     +  +   +NL+  +  L 
Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLK 165

Query: 86  ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +I   T    + F           +++++I       ++FG E  G+    +   +
Sbjct: 166 KHGFWIIGLTGSANDYF--------TNKLISDKI------VLVFGSEDKGIRRLVVETCD 211

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            +   P++    SLN+S A  ++     +
Sbjct: 212 YLAKIPISQRVESLNVSNAASIIFHSLHK 240


>gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 246

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L++ A+  +++L       N+G   R      +    +V P+D     +   R  +  A 
Sbjct: 91  LESEAQPLILVLDGVTDPHNLGACLRTADGAGVH--AVVVPKDKSASLNGTVRKVACGAA 148

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            V+  +++ +NL   +  L     +I  T        K++                  + 
Sbjct: 149 EVVPLIQI-TNLARTLKHLQDKGLWIVGTAG---ETDKTLYDVDLKG-----------ST 193

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  G+        + ++  P+     SL +S A  + ++E +   
Sbjct: 194 ALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEIVRQR 244


>gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 258

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSA 62
            L   +K PV+IL+        N+G   R+     +    +V P+D   S        + 
Sbjct: 97  TLLEKSKKPVLILILDGITDPHNLGACLRSADATGVD--FVVIPKDKSASITPVVSKVAC 154

Query: 63  NADCVIDSVRVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   I  VRV +NL  A+        +I+                   A  L   +   
Sbjct: 155 GAAESIPLVRV-TNLARAMDILKQQGVWIFGAAG--------------EAENLLYAMDCS 199

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            N+ ++ G E  GL        + + S P+     SLN+S A  + ++E +       E
Sbjct: 200 GNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQRGQFRE 258


>gi|319405253|emb|CBI78858.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 158

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 11/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R    F L  + ++ P     S++    +      ++   +  +
Sbjct: 5   IALFQPDIAGNTGTILRLSACFGLH-VHIIEPAGFDISDRNLKRA--GMDYLERASLERH 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L     D      T  R     + +L     A      I   +N  ++FGRE  G+ +  
Sbjct: 62  L-----DWQNFIDTMQR---FNRRLLLLSTKAKTYYTEICYQKNDVLLFGRESAGVPDYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++  ++ P+ P   SLN++ +V +   E +  
Sbjct: 114 YKAADCTLTIPMLPHARSLNLAISVAMTTGEALRQ 148


>gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
 gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
          Length = 244

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 21/147 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-RSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+   F++  + L  P+D  P+E    + +A     + S+   +NL+  +  L 
Sbjct: 113 NIGAIIRSAAAFDINAIIL--PKDNSPNESGGIAKAACGTLELISIIKVTNLRSCMNYLK 170

Query: 86  ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +I   T    + F             ++++ S   + ++FG E  G+        +
Sbjct: 171 KHGFWIIGLTGSAHDYF-------------SDKLISD-KMALVFGSEDKGIRRLIEETCD 216

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
            +   P++    SLN+S A  ++    
Sbjct: 217 YLAKIPISKRVESLNVSNAASIIFHSL 243


>gi|303276384|ref|XP_003057486.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461838|gb|EEH59131.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 411

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + + I+FG E  G T E +A ++  +  P+     SLN+S A  L++ E       +   
Sbjct: 198 EKLAIVFGTESVGCTEEILAAADLRVYLPLRGFADSLNLSVAAALVMHELFRLCPEAIGA 257

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREEV 236
             + +     +            + +E    R  +++K+ L  +     R      EV
Sbjct: 258 MDEAERASLREDWFSRLAAQRIRTPDEA---RAAKERKRALTKVRHKLNRNTPRTPEV 312


>gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK678]
          Length = 242

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|225019250|ref|ZP_03708442.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
           DSM 5476]
 gi|224947881|gb|EEG29090.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
           DSM 5476]
          Length = 259

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 14/153 (9%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L   Q   NIG + R      +    L++      S K   S+  +   +    +  +L 
Sbjct: 119 LCSTQDPGNIGTMIRTADALGIDG-VLLHNTCDIYSPKVVRSTMGSLFRMRFA-LCPDLL 176

Query: 79  EAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              A L+     T A          A  E A+ +    FSG  V +  G E  GL +   
Sbjct: 177 GLTASLNACGVDTCA----------AVVEDALPVTRASFSGPRV-LYIGNEGNGLPDSIA 225

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 I+ P+     SLN + A  +++WE  +
Sbjct: 226 FACARRITIPMRGNAESLNAASAAAILMWEMTK 258


>gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
           18228]
 gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
           18228]
          Length = 282

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 17/167 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+++       NIG + R+     +  + L        + +A   S  +  ++       
Sbjct: 122 VVVIHGVVDTTNIGAIFRSAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPW-TWAD 180

Query: 76  NLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              E + +L F     A T R+      +L                  + ++ G E  GL
Sbjct: 181 RPLECLKELGFKTAALALTDRSVPLDYPLL-------------KQESRLALVMGTEGDGL 227

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               I  ++ +   P+     SLN++ A  +  WE      VS +  
Sbjct: 228 PQTAIDGADYVARIPMYHGVDSLNVAAASAVAFWELRLPGNVSGDAQ 274


>gi|156081941|ref|XP_001608463.1| RNA methyltransferase domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148801034|gb|EDL42439.1| RNA methyltransferase domain containing protein [Plasmodium vivax]
          Length = 214

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 19/144 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R+   F ++++ +V+ +    +             I ++  FS++KE       
Sbjct: 13  NIGSIVRSCVAFRVSKIFVVSRKKNQVN---FFGHMGTCEYI-TIEYFSSMKE------- 61

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
              T  R+            +A+ +  R F  ++   +FG E  G+ +E ++  + ++  
Sbjct: 62  -LKTHLRDNGILLYACEITSSAVPVTRRPFENKDTAFLFGNEGTGINDETLSYCDKVVYI 120

Query: 147 PVNPLFP----SLNISQAVLLMVW 166
           P    +     SLN+S +  +++ 
Sbjct: 121 P---QYGNGTCSLNVSVSCAIILH 141


>gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 223

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 63/160 (39%), Gaps = 21/160 (13%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +LV+      N+  + R      + +   ++  +   +  + +  +     +++     N
Sbjct: 24  VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              AI+DL      +Y TT  + +                      QN   + G E+WGL
Sbjct: 81  TITAISDLKNKGFKLYGTTLNSESVDYRNFD-------------YSQNTCFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +NE  ++ +  I  P+  +  SLN+S A  ++++E +   
Sbjct: 128 SNELKSMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167


>gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana
           ATCC 700345]
 gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana
           ATCC 700345]
          Length = 246

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      +    +V P+D     +      +  A  V+   +V +
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PKDNSVGLTPVVSKVACGAAEVVPLYQVTN 158

Query: 76  NLKEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                        A T R+        + A  EA   L +   +G  + I  G E  GL 
Sbjct: 159 ------------LARTMRSLQEKGIWIIGAAGEADCELYQASLTG-PLAIAMGAEGKGLR 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                  + ++S P+     SLN+S A  + ++E +   + 
Sbjct: 206 RLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQRLA 246


>gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
           BSR3]
 gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
           BSR3]
          Length = 260

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 30/176 (17%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-- 62
           A +L        ++L   Q   N+G + R+     ++Q              A + S+  
Sbjct: 104 AAELPGRVARTAMVLDGVQDAGNVGSILRSAAAAGVSQ-------VFCMRGTAYAWSSKV 156

Query: 63  -----NADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                 A  ++D   +  +++ EA+             R +    L          +   
Sbjct: 157 LRSGMGAHFLLD---IHEDVEAEAL-----------IPRLDVPVALT-DSHGAQAIDDCD 201

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               V  +FG E  G++      +   ++ P      SLN++ A  + ++E     
Sbjct: 202 LTGPVAWVFGNEGAGVSAAWREAAGLRVTIPQPGGMESLNVAAAAAVCLFEQCRQQ 257


>gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 251

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 20/148 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + +   R    +     +S  A   +   RV +NL +   
Sbjct: 110 EDPHNLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARV-NNLVQITK 168

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +I+ T  +  +  K                 +     ++ G E  G++   + 
Sbjct: 169 MLKKRGYWIFGTAMKGEDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 213

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +  ++ P+     SLN S A  ++++
Sbjct: 214 QMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
           Eklund 17B]
          Length = 260

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 61/149 (40%), Gaps = 11/149 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        +EK   S+  +   +     + +      
Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMP--IYYDD-----N 172

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +   I    +  ++ FK ++   E++    +    G+ + +  G E  G++NE + L++ 
Sbjct: 173 EFSLI---KSLKKDGFKLIVTSLESSKDFFKEDLKGKTI-LTVGNEGNGVSNEVLDLADR 228

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  P+     SLN++ A  ++++E +  
Sbjct: 229 RVKIPMPGGAESLNVAIATSIIIYEKIRQ 257


>gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
 gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
          Length = 297

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 33/184 (17%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
            L+       I L   +   N+G V R         + L+       S +   ++  +  
Sbjct: 136 SLKPKGNDVYIALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVF 195

Query: 65  ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                       ++  + FS L         I  T  +   +++++              
Sbjct: 196 SVPLYRASEADFLNWRKGFSGL---------IVGTHLKGAVDYRTI-------------P 233

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ + V ++ G E+ GL +      + +   P      SLN++ A  +M++E    ++  
Sbjct: 234 YANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTL 293

Query: 176 SEKN 179
            E+ 
Sbjct: 294 DERG 297


>gi|221134069|ref|ZP_03560374.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola sp. HTCC2999]
          Length = 235

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 18  ILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS--SSANADCVIDSVRVF 74
           +L++      N+  + R      + +  +V     W    +    +S  A   +      
Sbjct: 22  VLMEEVHKPHNVAALIRTCDAVGIHEAHVV-----WNQNYSLRVGTSLGAHHWVGMHE-H 75

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           S++++AIA L              + ++       V    +       II G+E++G T 
Sbjct: 76  SDIEKAIAHL---------KGQGMQVLVTNLSDDAVDFREVDYTLPTAIILGQEKFGATK 126

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
             IAL++  I  P+  +  SLN+S A  ++++E       +             + +L
Sbjct: 127 NAIALADKEIVVPMVGMTVSLNVSVAAAVILYEAQRQREAAGMYETMTLPEAECQRQL 184


>gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           HH22]
 gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
 gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           HH22]
 gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0309B]
 gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0309A]
          Length = 282

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 137 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 195

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++IA L     +I+ T     +  +                 +   + +I G E  G++
Sbjct: 196 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 240

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN   A  L+++E     
Sbjct: 241 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 279


>gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13]
          Length = 249

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     SS  A   I  VRV +  
Sbjct: 101 ILDEIEDPHNLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKSSTGAIEHIPVVRVTNLA 160

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I+ T                   V   ++     +G+I G E  G+  
Sbjct: 161 RTVDELKERGLWIFGT--------------DAKGTVDYTKMDGSLPLGLIIGSEGKGMAR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                 + ++S P+     SLN S A  L+++E     + + E
Sbjct: 207 LLKEKCDFLVSLPMVGKVTSLNASVAASLLMYEVFRKRLSAGE 249


>gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 240

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 12/161 (7%)

Query: 13  KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           K P+ + L   +   N+G + R      +  + +   R+   +      S  A   +   
Sbjct: 88  KMPLFVMLDGLEDPHNLGAILRTCDCVGVDGVIIGKHRNVGLTPTVAKVSTGAIDTVKVA 147

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +NL ++I  L          +  F  V    E +    E  +    V I+ G E +G
Sbjct: 148 -MVTNLAQSIKYL---------KKQGFWIVGTDFENSRDYREGQYDVPLV-IVVGSEGFG 196

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +++      +  +  P+  +  SLN S A  ++++E     
Sbjct: 197 ISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYNQR 237


>gi|313675966|ref|YP_004053962.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312942664|gb|ADR21854.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 170

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 22/176 (12%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
               ++N+     I+L+  + +  EN+GM+ R    F L ++  V       + KA+ +S
Sbjct: 5   EHEHIENTKHDLQIVLIAENIRTPENLGMIMRLSEAFGLEKIYFVGEHAIDLTTKAKRAS 64

Query: 62  ANA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            N       + V+D  + FS L E            A      K       +  + N RI
Sbjct: 65  RNTYKTMDYEFVVDVKKQFSQLLE--------VGYHAIALEITK------FSEPIHNLRI 110

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + + V +I G ER G++ E +         P+     S+N+  A+ + +++  EN
Sbjct: 111 NNQKKVVLIIGSERQGISEELLQFCQNHYHIPMFGGNSSINVVNALSIGLFKITEN 166


>gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512]
          Length = 286

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +   R  + 
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 192

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E +A      +  + AT      +++++   K             + V ++ G E+ G
Sbjct: 193 PEEFLAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  +    ++A+   P      SLN++ A  +M++E   + +  +E
Sbjct: 239 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284


>gi|293605074|ref|ZP_06687466.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
           43553]
 gi|292816477|gb|EFF75566.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
           43553]
          Length = 262

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 15/177 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +TP +P++        ++    Q   N+G + R      + ++ L        S K   S
Sbjct: 98  VTPPSPEMPAEVDENCVLFDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSAKVLRS 157

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A   +    +  ++             TA        ++A                 
Sbjct: 158 GQGAHFALA---IHEHID-----------LTALLPRLRVPLVATALDGARNLYEGRLPAR 203

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSS 176
              +FG E  G+    +  ++  +  P +     SLN+  A  + ++E    ++ ++
Sbjct: 204 CAWVFGHEGQGVDPVLLDAASHKVCIPHDMAAVESLNVGAAAAICLFEQRRQALANA 260


>gi|226355931|ref|YP_002785671.1| rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase)
           [Deinococcus deserti VCD115]
 gi|226317921|gb|ACO45917.1| putative rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA
           methylase) [Deinococcus deserti VCD115]
          Length = 270

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 61/180 (33%), Gaps = 31/180 (17%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P  P+  N A   +++L   +   N+G + R+       Q  LV  R   P       S
Sbjct: 104 APRLPEPGNDA--VLVVLHGLEKPGNVGAILRSADAAG-AQGVLVLGRGADPYGPNVIRS 160

Query: 62  ANADCVIDSVRVFSNLKE--AIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           +            + L E  A+          +  T    R  + + L            
Sbjct: 161 SQGSVF---TMPVAVLDEGTALEWLSTRGFTTVACTPDAPRTYWDAPLT----------- 206

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP--SLNISQAVLLMVWECMENS 172
                 V ++ G E  GL  E    ++  +S P++      SLN++ A  L+++EC    
Sbjct: 207 ----GRVALLLGTEHAGLP-ESWRHTDHSVSIPMHEGSGADSLNVATAAALVLFECARQR 261


>gi|329769782|ref|ZP_08261183.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
 gi|328838144|gb|EGF87762.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
          Length = 170

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EA 80
           Q   N+G + R    F+   + L         +K   S+  ++  ID    F N+   + 
Sbjct: 32  QDPGNLGTIIRTADAFSFDCIILGKGTTSIYGQKVIRSTQGSNFHID---CFDNIDILDV 88

Query: 81  I---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           I    D    YAT+ +                 L +    G+ V +IFG E  G++ E +
Sbjct: 89  IPKMEDFDL-YATSLKGDRY-------------LEQIDSVGEKVAVIFGNEGSGVSEEIL 134

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              N ++   +     SLN++ A  +++ 
Sbjct: 135 DKVNNLLKINMTGQAESLNVAVAAGIVMH 163


>gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5]
          Length = 274

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 18/177 (10%)

Query: 3   PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           P  P + +  K    + +L +     NIG + R+     +    L+ P    P   +A  
Sbjct: 108 PALPDIVDVCKNARRIAVLENVVNPTNIGAIFRSAAALGM-DAVLLTPGCSNPLYRRAIR 166

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYA----TTA-RNRNNFKSVLAPKEAAIVLNER 114
            S      I         +     +  + A    T A   R +   +  P   A      
Sbjct: 167 VSMGTVFQIPWTFFDEKTEWKTEGIRSLKAMGFKTAAMALREDSFDIDDPHLMAE----- 221

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               + + ++ G E  GL +E IA  +  +  P+     SLN++ A  +  W+  + 
Sbjct: 222 ----EKLAVVLGTEGDGLASETIADCDYTVCIPMAHGVDSLNVAAASAVAFWQLGKR 274


>gi|227487011|ref|ZP_03917327.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227093085|gb|EEI28397.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 134

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 20/135 (14%)

Query: 42  QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL--HFIYATTARNRNNFK 99
            L L+ P      ++    +      +  V V  +L   +A L    ++A T    N   
Sbjct: 8   HLHLIRPLGFDLEDRHLRRAGLDYHDLARVTVHDSLDACLATLPGARVFAFTGHCSNMLF 67

Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI---ISFPVNPLFPSLN 156
            V                     ++FG E  GLT+E +   + +   +  P+     S+N
Sbjct: 68  DVRF--------------APGDVLLFGTEPTGLTDEAMNH-DRVTQKVRIPMLEGRRSMN 112

Query: 157 ISQAVLLMVWECMEN 171
           +S A  +  +E    
Sbjct: 113 LSNAAAVATYEAWRQ 127


>gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 247

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++LV  + Q   N+G   R+      T + +   +    +   R +SA A 
Sbjct: 91  LVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSASVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            +I  V   +NL   + DL     +IY                   A     ++    N+
Sbjct: 151 DLIP-VVAVTNLSRCLKDLQKQGVWIYGLAG--------------EATASLYQLDLKGNI 195

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  GL        + ++  P+     SLN+S A  + ++E +   
Sbjct: 196 ALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246


>gi|89073005|ref|ZP_01159552.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89051223|gb|EAR56679.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 155

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 32/158 (20%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +  +     R                    + +  +
Sbjct: 10  CIGLFNPKTPENVGSVMRAAGCYGVNSVFYTGSRYDH-----------------AAQFCT 52

Query: 76  NLKEAIADLHFIYATTARNRNNFKSV---LAPKEAAIVLNERIFSG----QNVGIIFGRE 128
           + K+A  D+  I        +  K +     P    ++   +        +    IFG E
Sbjct: 53  DTKKASLDIPLIG-----VEDLKKIIPIGCVPVAVDLIEGAKALPDYKHPKRAFYIFGPE 107

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L  E        I  P N    S+N++ AV ++++
Sbjct: 108 DGTLKKEITDFCRETIYVPTN---GSMNLAAAVNVILY 142


>gi|296126080|ref|YP_003633332.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
           12563]
 gi|296017896|gb|ADG71133.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
           12563]
          Length = 162

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 59/167 (35%), Gaps = 28/167 (16%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLT-QLRLVN-PRDGWPSEKARSSSANADCVIDSV 71
              I L  P++  N G + R      L  +L +V+ P     S++ R +        + +
Sbjct: 11  NIAIALYRPEIPANTGNIGRLC--VGLNIELHIVSKPSFIISSKEVRRA---GLDYWEHL 65

Query: 72  RV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +    N    +   +          NN + ++   +      +      N  ++FGRE 
Sbjct: 66  VLIKHENENTFLEYCN----------NNDRRIIPITKFGKNRYDEFNYSNNDILLFGRES 115

Query: 130 WGL-----TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL      N+     +  I  P++    S+N+S    +  +E   +
Sbjct: 116 TGLRESLWEND----LDNSIYIPMSDNIRSINLSNTAAITAYEAYRH 158


>gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
 gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
          Length = 275

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            + + + + I+ G E  GL +E IA  +  +  P+     SLN++ A  +  WE   
Sbjct: 217 ELLAQEKLAIVLGTEGDGLASETIADCDYTVKIPMAHGVDSLNVAAASAVAFWELGR 273


>gi|300933427|ref|ZP_07148683.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 278

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 7/150 (4%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNL 77
           V+     N G + R         +            KA  +SA +   +   R    +++
Sbjct: 123 VETGEPGNAGTLIRVSDALGAAGVVFAGQSVDPLGGKAVRASAGSIFHLPVAREAGVADV 182

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            + + +  F    TA + +      +  E      E+    Q    +FG E  GL + + 
Sbjct: 183 IDRLHEEGFTVMATAMDGDVSLEEASTSEPG----EKPILAQPTAWLFGNEAHGLGHWQ- 237

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            L++  IS P+     S+N++ A  + +++
Sbjct: 238 DLADLRISIPMRGRAESMNLATAASICLYQ 267


>gi|295687973|ref|YP_003591666.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295429876|gb|ADG09048.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 152

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P + +N+G   R    F +  L ++ P      +K+   +A     +  ++   
Sbjct: 2   RIALFQPGIPQNVGAAIRLSACFGVG-LDVIEPCSFPLDDKSLKRAALDYGPLAHLKRHD 60

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    +          A  R + + +L     A   +   F+  +  ++FG E  G   E
Sbjct: 61  SWGAFLK---------APERVDGRLLLFTTRGATPFHRFEFAPGDT-LLFGNESRGAPEE 110

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             A  +  I  P+ P   S+N++    + + E +  +    E
Sbjct: 111 VHAAVHGRIIIPIRPETRSMNLATTAAMALGEALRQTGGFPE 152


>gi|94310392|ref|YP_583602.1| tRNA/rRNA methyltransferase (SpoU) [Cupriavidus metallidurans CH34]
 gi|93354244|gb|ABF08333.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
          Length = 262

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 14/170 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L  +     IIL   Q   N+G + R+     +    L        S K   +   A+  
Sbjct: 107 LPATIDTDCIILDGLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFH 166

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++ V     L+  + +                 +LA    A          Q VG + G 
Sbjct: 167 LNIVEHC-TLE--MLESRLAV-----------PLLATSSHADAAVFDTDLRQPVGWVIGN 212

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  G++ E +A  +  +  P      SLN++ A  + ++E +     S  
Sbjct: 213 EGGGVSPEWMAHVSRTVGIPQPGGLESLNVAAATAVCLFEAVRQRRASGG 262


>gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405]
          Length = 242

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPTHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           marianensis DSM 12885]
 gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           marianensis DSM 12885]
          Length = 298

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 59/174 (33%), Gaps = 18/174 (10%)

Query: 11  SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           + + P++++  + Q   N+G V R           +   R          SSA A   + 
Sbjct: 137 AGQPPLLVICAEIQDPHNLGAVFRTAEAAGAHGAVVPVHRSAPLGATVFKSSAGALVHLP 196

Query: 70  SVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              V +   ++++      ++ A              P+       +R    Q V ++ G
Sbjct: 197 VAEVTNLARSVEQLKERGVWVVAA------------DPE--GAEPYDRWDWTQPVAVVLG 242

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            E  G+        +  ++ P+     SLN+S A  ++++E           + 
Sbjct: 243 SEGRGVPPLVRRRCDGRVTIPMAGRVGSLNVSVAAGVLLFEAARQRRQQGLPSP 296


>gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 270

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 21/161 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++    Q   N+G + R    F    +          + K   ++  +   +  +++  
Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGS---LFHMQIMR 182

Query: 76  NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +E      + D  F              V  P     +   +I   +   ++ G E  
Sbjct: 183 EAEEGKLIKILKDNSFAV-----------YVATP--YGDIEISKIVPDKRFCVVIGNESE 229

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G+++    ++   I  P+     SLN + A  ++++E  + 
Sbjct: 230 GVSDSFAKMATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652]
 gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652]
          Length = 286

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +   R  + 
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 192

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E +A      +  + AT      +++++   K             + V ++ G E+ G
Sbjct: 193 PEEFLAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  +    ++A+   P      SLN++ A  +M++E   + +  +E
Sbjct: 239 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284


>gi|313671984|ref|YP_004050095.1| RNA methyltransferase, trmh family, group 3 [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938740|gb|ADR17932.1| RNA methyltransferase, TrmH family, group 3 [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 230

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 18/169 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +L  ++    I L   Q   N G + RA   F +    +        +     SSA A  
Sbjct: 75  ELGQNSGNICI-LDHIQDPHNFGAIVRAGHCFGVRNFIIAKDNQSPVTPVVVKSSAGAAI 133

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                 V +   +++E     ++IYA                         I   +   +
Sbjct: 134 YSRFYEVVNINRSIEELKEKGYWIYA--------------ADMNGETKLGDIRPNEPYVV 179

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I G E  G+    +  ++ +   P+  +  SLN SQ+  +  +    NS
Sbjct: 180 IIGSEGEGIRKNVLKKADVVFRIPMRGVIDSLNASQSAAIAFYHFYINS 228


>gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 264

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 22/172 (12%)

Query: 3   PYAPQLQ-NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSS 60
           P A  L  +     ++IL   Q   N+G + R    F    + L +   D +  +  RS 
Sbjct: 103 PQAKSLDIDQLTKGLLILDQVQDPGNLGTLIRTADAFGYRDVLLGLGTVDLYNDKVLRSM 162

Query: 61  -----SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                + N   V D V V   L+EA     +   TT          L  +  A    +  
Sbjct: 163 QGSHFAVNTYEV-DLVEVIPQLQEA----GYFITTT---------ELNNQAKASNAFDLK 208

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             G+   ++ G E  G++     L++A +  P++    SLN++ A  +++++
Sbjct: 209 SKGKW-ALVMGNEGNGVSQTTSQLADAALYIPMSGSAESLNVAVAGAIVMYQ 259


>gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 256

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 29/164 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72
           ++IL + Q   N+G + R    F+     L+     + + K  S+S  A     ++    
Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILK--- 161

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGR 127
              NL + +  LH        T               + A  + + +    Q   IIFG 
Sbjct: 162 -VENLSQILDKLHQNNFVSIGT------------FLSKKAAKIKDFVIENEQKYAIIFGN 208

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  G++     +    I  P+   F SLNI+ A  ++++E    
Sbjct: 209 ESSGISAALEKIIQKQIYIPI--AFESLNIANATAILLYEFSTQ 250


>gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 256

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 29/164 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72
           ++IL + Q   N+G + R    F+     L+     + + K  S+S  A     ++    
Sbjct: 108 IVILENIQDPGNLGTIIRNCSAFDFA---LIYSGVDFYNSKVISASKGAIFKTPILK--- 161

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGR 127
              NL + +  LH        T               + A  + + +    Q   IIFG 
Sbjct: 162 -VENLSQILDKLHQNNFVSIGT------------FLSKKAAKIKDFVIENEQKYAIIFGN 208

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  G++     +    I  P+   F SLNI+ A  ++++E    
Sbjct: 209 ESSGISAALEKIIQKQIYIPI--AFESLNIANATAILLYEFSTQ 250


>gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 243

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P + ++ + P ++IL       N+G   R      +    +V PRD     +   +  + 
Sbjct: 86  PAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  + V +             A T R     N   V    EA   L +   +G  
Sbjct: 144 GAAETVPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242


>gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 249

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           +IIL + +   N+G + R   N      + +   R    +     +SA A       +V 
Sbjct: 103 IIILDNIEDPHNLGAIIRT-ANLAGAHGVIIPKHRAASLTATVAKASAGAINYTPVAKVT 161

Query: 75  S---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +    +++ + D    +A                +       ++     +G++ G E  G
Sbjct: 162 NIANTIED-LKDKGLWFACA--------------DMGGTTMYQLNLKGPIGLVIGNEGSG 206

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++       + I S P+     SLN S A  ++ +E +   +
Sbjct: 207 VSRLVREKCDMIASIPMKGDIDSLNASVACGVLAFEVVRQRL 248


>gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 240

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84
           NIG + R+   F++  + L  P+D  P+E      ++     +I  ++V +NL+  +  L
Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNESGGIAKAACGTLELIPIIKV-TNLRSCMNYL 164

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +I   T    + F              +++ S   + ++FG E  G+        
Sbjct: 165 KKHGFWIIGLTGSANDYF-------------TDKLISD-KIALVFGSEDKGMRRLVEETC 210

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + +   P++    SLN+S A  ++     +
Sbjct: 211 DYLAKIPISKRVESLNVSNAASIIFHSLHK 240


>gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7]
 gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 244

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 57/169 (33%), Gaps = 17/169 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            + +  +  +++L   +   N+G + R      +  + +   R    +      S  A  
Sbjct: 87  TIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGAID 146

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   +V +    L++      ++      + +  +          ++           I
Sbjct: 147 HVKVAQVTNLTRTLEDLKKRSFWVVGC---DLDKSQDYRQVDYNMPLV-----------I 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E +G++       +  +  P+     SLN S A  +++++   + 
Sbjct: 193 VIGSEGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYNSR 241


>gi|216263798|ref|ZP_03435792.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
 gi|215979842|gb|EEC20664.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
          Length = 218

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             + + FG E  GL++E +  ++  +  P+     S NIS AV ++++  +
Sbjct: 127 NKMAVFFGTELTGLSSEVLEAADLCVKIPMYGFTQSYNISVAVAIVMYSLL 177


>gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 229

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84
           NIG + R+   F++  + L  P+D  P+E      ++     +I  ++V +NL+  +  L
Sbjct: 97  NIGAIIRSAAAFDINAIIL--PQDNSPNESGGIAKAACGTLELIPIIKV-TNLRSCMNYL 153

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +I   T    + F              +++ S   + ++FG E  G+        
Sbjct: 154 KKHGFWIIGLTGSANDYF-------------TDKLISD-KIALVFGSEDKGMRRLVEETC 199

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + +   P++    SLN+S A  ++     +
Sbjct: 200 DYLAKIPISKRVESLNVSNAASIIFHSLHK 229


>gi|42528213|ref|NP_973311.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41819483|gb|AAS13230.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 255

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 19/148 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIAD 83
           N+G + R+   F +  + L    +    +  A   +      ++ V++F  S+    +  
Sbjct: 113 NLGAIIRSAAFFGIENIVLTKEDKQASITTSAYRVAQGG---MEFVKIFKVSSTAWFLRQ 169

Query: 84  LH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                    T  R  +              L   I   +   I+ G E  G++ E   L 
Sbjct: 170 CRGRLTCIGTDLRAHHEI----------ADLGRLIEKDEACVIVLGNEERGISEEAKKLC 219

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
             +I    +    SLN++QA  L     
Sbjct: 220 VHLIKIKGSGNVESLNVAQAATLFCHSL 247


>gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
 gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
          Length = 259

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 11  SAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +A GP    +L + Q   N+G + RA     +T + +        + K   S+  +   +
Sbjct: 105 AAPGPAFLMVLENIQDPGNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRV 164

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             V       +LK   A    +YA     RNN+              E+     + G + 
Sbjct: 165 PFVYTEDLPASLKALKAGGVRLYAAHLNGRNNY--------------EKEDYTVDTGFLV 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GLT+E  AL++A +  P+     SLN + A  ++++E     
Sbjct: 211 GNEANGLTDETAALADACVKIPMKGKVESLNAAVAASVLMFEAARQR 257


>gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 313

 Score = 55.5 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 13/165 (7%)

Query: 10  NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  + P+I+ L       N+G V R++  F      LV      P  +A   +A A    
Sbjct: 159 DEGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVLV------PERRAAGMTAGAWKT- 210

Query: 69  DSVRVFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            S    +     +A   +   A  A  +     V    +    + E    G  V I+ G 
Sbjct: 211 -SAGTAARTP--VARCTNLTRALEAYKKAGVVVVGLAADGESEIGELEALGGPVVIVVGS 267

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 268 EGKGLSRLVGETCDYRVRIPMPGGAESLNAGVAAGVVLYEAARRR 312


>gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 248

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   +   R
Sbjct: 100 NPLILILDGLTDPHNLGSILRTADATNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVLIAR 159

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +  A   + + T                     +    SG  + +I G E 
Sbjct: 160 VTNLSQTLDKLKAKGFWTFGT--------------DMNGTPSHRWNTSG-KLALIIGNEG 204

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +I+ P+N    SLN S A  ++++E   N +
Sbjct: 205 KGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL 248


>gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
 gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
          Length = 285

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++IA L     +I+ T     +  +                 +   + +I G E  G++
Sbjct: 199 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 243

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN   A  L+++E     
Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282


>gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           R712]
 gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           S613]
 gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           PC1.1]
 gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4248]
 gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2134]
 gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0860]
 gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0109]
 gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0411]
 gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0470]
 gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0635]
 gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 512]
 gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0102]
 gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 516]
 gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           R712]
 gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           S613]
 gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           PC1.1]
 gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76]
 gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TUSoD Ef11]
 gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0411]
 gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0109]
 gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0860]
 gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2134]
 gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4248]
 gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 512]
 gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0102]
 gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0635]
 gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 516]
 gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0470]
 gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4000]
 gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0017]
 gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0027]
 gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2141]
 gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4244]
 gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0012]
 gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0031]
 gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0043]
 gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0312]
 gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0645]
 gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1302]
 gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1341]
 gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1342]
 gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1346]
 gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0630]
 gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Enterococcus faecalis 62]
 gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1467]
          Length = 285

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++IA L     +I+ T     +  +                 +   + +I G E  G++
Sbjct: 199 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 243

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN   A  L+++E     
Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282


>gi|227530112|ref|ZP_03960161.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
           49540]
 gi|227349968|gb|EEJ40259.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
           49540]
          Length = 288

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 14/163 (8%)

Query: 11  SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
               P I +L       NIG + R+     +  + + +        +A   S      + 
Sbjct: 129 PKAHPRIAVLESVVNPTNIGAIFRSAAALGIDGVVVTSDSADPFYRRASRVSMGTVFQVP 188

Query: 70  SVRVFSNL--KEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              V + L   E I+ LH +   TA    R+N  ++  P         ++     + II 
Sbjct: 189 WTYVDAKLWQAEGISLLHRLGYKTAAMALRHNTVNIDDP---------QLDQVDKLAIIL 239

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           G E  GL  + IA S+  I  P+ P   SLN++ A  L  WE 
Sbjct: 240 GSEGPGLREKTIAQSDFTIKIPMAPGVDSLNVAAASALAFWEL 282


>gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 260

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 14/165 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L    +   IIL   Q   N+G + R+     +    L        S K   +   A+  
Sbjct: 107 LPARIEQDCIILDGVQDAGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRAGMGANFH 166

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++ V     L EA+A                  +LA    A            V  + G 
Sbjct: 167 LNIVEHC-TL-EALAP------------RLAIPLLATSSHAEAAVFDTDLRGPVAWVVGN 212

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G++   +A     +  P      SLN++ A  + ++E +   
Sbjct: 213 EGAGVSEGWMAHVTRKVGIPQPGGMESLNVAAATAICLFEAVRQR 257


>gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
           7061]
 gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
           7061]
          Length = 249

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 19/164 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL + +   N+G + R         + +   R    +     +S  A   I   +V +NL
Sbjct: 101 ILDEIEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKV-TNL 159

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             A+ ++     ++  T A  + +++              +      + ++ G E  G+ 
Sbjct: 160 SRALDEMKERGIWVAGTDASAKQDYR--------------QFDGTMPLALVIGSEGKGIG 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                  + +I  P+     SLN S A  L+++E         E
Sbjct: 206 RLIKEKCDFLIKLPMAGKVTSLNASVAASLLMYEVYRKRYPLGE 249


>gi|148656461|ref|YP_001276666.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
 gi|148568571|gb|ABQ90716.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
          Length = 432

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 30/53 (56%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + I+ G E  GLT+  +A  ++++  P+ P   SLN+  A  +++++ +  S
Sbjct: 373 PLAIVVGNETDGLTDATLAACSSLVRIPMAPGQDSLNVGVAAGVLLYDVVRRS 425


>gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX0104]
 gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX0104]
 gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2137]
          Length = 285

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++IA L     +I+ T     +  +                 +   + +I G E  G++
Sbjct: 199 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 243

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN   A  L+++E     
Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282


>gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 268

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFSNLKEA--IAD 83
           N G VAR+     +  + +V  R     +  A  +SA A   I   RV   +     +  
Sbjct: 128 NFGAVARSAECLGVDAM-IVPSRGAAQLNSDAVKTSAGALYHIPVCRVDHLIDTVKYLKQ 186

Query: 84  LHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               I A +              E A +            I+ G E  G++ + +  ++A
Sbjct: 187 CGLRIIACS--------------EKASINVYDEDLTDPCVILMGSEEDGISMDLLRYADA 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++ P++    SLN+S A  +++ E     +    K
Sbjct: 233 HVTIPMSGHINSLNVSVATGMILSEVTRQRLKQQSK 268


>gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
           goodfellowii F0264]
 gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
           goodfellowii F0264]
          Length = 244

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 11/170 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +T +  ++    K  V+IL   Q   N G + R+   F +  + + +  +   +E    S
Sbjct: 86  LTEFFEKVLAKDKSIVVILDQIQDPRNFGAIIRSAECFGVDGIVIQDRNNVKVTETVVKS 145

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S  A   +D ++V +     I+D      T  + +     V   +     L       + 
Sbjct: 146 STGAIEHVDIIKVTN-----ISD------TIDKFKKYGYKVYGAEADGENLYYEESYPKK 194

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           V ++ G E  G+  +     +  +   +     SLN+S A  +++ E  +
Sbjct: 195 VCLVLGSEGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIILAEMSK 244


>gi|305681831|ref|ZP_07404635.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658304|gb|EFM47807.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 266

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 33/162 (20%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V      N G + R         +          S KA  +SA +   +         
Sbjct: 123 VAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVP-------- 174

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIF 125
                         AR+R+  + +   K   + L      G+                +F
Sbjct: 175 -------------VARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLARPTAWLF 221

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G E  GL  E + L++  ++ P+     SLN++ A  + +WE
Sbjct: 222 GNEAHGLGPELMELADHRVAIPIKGSAESLNLATAASICLWE 263


>gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 287

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 40/185 (21%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-----VIDSVR 72
           +L +     NIG V R+     +  + L          +A   S          ++DS  
Sbjct: 125 VLENVMNPTNIGAVFRSAAALGMDAVLLTAACSNPLYRRAIRVSMGTVFQIPWTILDSRC 184

Query: 73  V-------------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                         F     A+ D                      + A ++ E      
Sbjct: 185 SWPQPGISRLRGMGFKTAAMALGDDSICI-----------------DDAGLMAED----- 222

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            + +I G E  GL+ E IA  +  +  P++    SLN++ A  +M W+        S   
Sbjct: 223 KLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDSLNVAAASAVMFWQIGRAFHEDSGSY 282

Query: 180 VKEQN 184
               N
Sbjct: 283 PPGNN 287


>gi|254444144|ref|ZP_05057620.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198258452|gb|EDY82760.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 241

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 13/154 (8%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSS 60
           T  A +       P++IL       N+G +AR    F + +  +   R    P E+A   
Sbjct: 75  TTTAAEFWAKEGMPMLILDGVSSVANLGGIARTSAYFGVEKFLIAATRKQARPCEEAYRE 134

Query: 61  SANADCVIDSVRVFSNLKEAIAD---LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +     ++D +R+  N+   +      HF+        +     L P+   I   + +  
Sbjct: 135 ARGGLDMVD-LRLVDNVPSFLKGARKTHFVIGL-----DIEGPPL-PELMGICPEDELE- 186

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
            + V I+ G E  GL        + ++  P +  
Sbjct: 187 -KPVAIVIGNEETGLHESSKQECSVLVGIPGSGA 219


>gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 248

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 11/153 (7%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V      N G + R         + L        + K   +SA +   I       +  +
Sbjct: 104 VGISEPGNAGTLIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIP----VLSAPD 159

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A+A +        + ++    VLA      V  E          +FG E  GL  +   L
Sbjct: 160 AVAAVT-------KLKDAGLQVLATVLDGPVSLEDADLSVPTAWLFGPEAHGLPADVAGL 212

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + A +  P+     SLN++ A  + +++   + 
Sbjct: 213 ATAGVRIPMPGNAESLNVASAAAICLYQSARSQ 245


>gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
           plutonius ATCC 35311]
 gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
           plutonius ATCC 35311]
          Length = 279

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 134 ILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTKTSTGAVEYIPVARV-TNL 192

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + IA L     +I+ T                  I       +G  + +I G E  G++
Sbjct: 193 SQIIAKLKEQQFWIFGT--------------DMTGIDYRNWDATGA-LALIIGNEGKGIS 237

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 ++ +I+ P++    SLN   A  L+++E   
Sbjct: 238 AGLKKEADELITIPMSGHVQSLNAGVAAGLLMYEAYR 274


>gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
 gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
          Length = 302

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + S + + I+ G E  GL  + I   +  +  P++    SLN++ A  +  WE  +
Sbjct: 247 LHSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|229817686|ref|ZP_04447968.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
           20098]
 gi|229785475|gb|EEP21589.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
           20098]
          Length = 290

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 13/156 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------F 74
             N+G + R+    ++    LV P  G P   +A   S      +   R+         F
Sbjct: 135 PTNVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIDGDDKHYWPF 193

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+E  +      A    + +     L  +  +   + +      + +IFG E  GL  
Sbjct: 194 KGLEELHSLGFTTVAMALEDDSISLDELTRRLNSSASDPQHID--KLALIFGTEGDGLNR 251

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             IA ++  +  P++    SLN++ +  +  +    
Sbjct: 252 HTIARADLTVKIPMSHDVDSLNVAASSAVAFYATRR 287


>gi|224076677|ref|XP_002196774.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Taeniopygia guttata]
          Length = 198

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +L   Q   N+G + R+ +   +   R+V  R      +     +SA A  V D   V+ 
Sbjct: 39  VLEHIQDPMNLGALLRSAYFLGVD--RVVATRGNSCPLTPVVSKASAGAMEVFD---VYG 93

Query: 76  N------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                  LK   A+   +  T +R  +        ++  ++        + V ++ G E 
Sbjct: 94  TDDLQGFLKAKSAEGWEVVGTVSRPEDV-------EDVPVISCSEFQWDKPVIVVIGSEG 146

Query: 130 WGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVW 166
            GL+ E       +++ P    ++P   SLN+S A  +++ 
Sbjct: 147 EGLSLETQQQCQRMLAIPPGRALHPGLDSLNVSVAAGILLH 187


>gi|203283978|ref|YP_002221718.1| spoU protein [Borrelia duttonii Ly]
 gi|203287521|ref|YP_002222536.1| spoU protein [Borrelia recurrentis A1]
 gi|201083421|gb|ACH93012.1| spoU protein [Borrelia duttonii Ly]
 gi|201084741|gb|ACH94315.1| spoU protein [Borrelia recurrentis A1]
          Length = 218

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 15/127 (11%)

Query: 96  NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
           N +K V    +   +  E       + + FG E  GL++  +  ++  +  P+     S 
Sbjct: 104 NGYKIVATSLDNEAISLEDFPIDTKMAVFFGTELTGLSHTILQNADLHLKIPMYGFTQSY 163

Query: 156 NISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKK 215
           N+S AV ++ +  +     SS               +   L+  E    +  Y+R + K+
Sbjct: 164 NLSVAVAIVFYSLINRLRSSS---------------IDYLLNEDEKLNLKLEYYRKIIKR 208

Query: 216 KKMLDDL 222
            K+++ L
Sbjct: 209 YKVIEKL 215


>gi|323451205|gb|EGB07083.1| hypothetical protein AURANDRAFT_14487 [Aureococcus anophagefferens]
          Length = 164

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P    N     R +  F +  + +V        E    ++  A   +        L+E 
Sbjct: 30  RPSNPANAWACLRTIDAFGVQDVDVVK----DTLEARMHAAMGAQKWL-------TLREH 78

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            A    + A  A       + L P    I   +     +   ++FG E  G++ +  A +
Sbjct: 79  DAPGDLVDALHAAGYKVAATDLGPGSRPIGDVDWAA--EPYALVFGNEETGISEDLRARA 136

Query: 141 NAIISFPVNPLFPSLNISQAVLLMV 165
           +  +  P+  L  SLN+S +V   +
Sbjct: 137 DVRVHLPMRGLAESLNLSVSVGACL 161


>gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1]
          Length = 302

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + S + + I+ G E  GL  + I   +  +  P++    SLN++ A  +  WE  +
Sbjct: 247 LHSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           halifaxensis HAW-EB4]
 gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           halifaxensis HAW-EB4]
          Length = 246

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      +    +V P+D     +      +  A  V+   +V +
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHG-VIV-PKDNSVGLTPVVSKVACGAAEVVPLYQVTN 158

Query: 76  NLKEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                        A T R+        + A  EA   L +   +G  + I  G E  GL 
Sbjct: 159 ------------LARTMRSLQEKGIWIIGAAGEADCELYQASLTG-PLAIAMGAEGKGLR 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                  + ++S P+     SLN+S A  + ++E +   + 
Sbjct: 206 RLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQRLA 246


>gi|222824411|ref|YP_002575985.1| rRNA methyltransferase, TrmH family [Campylobacter lari RM2100]
 gi|222539632|gb|ACM64733.1| conserved hypothetical protein, probable rRNA methyltransferase,
           TrmH family [Campylobacter lari RM2100]
          Length = 226

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 18/152 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRV 73
           ++IL +     NIG + R+ +      + LV  +        R+SS  A    ++ +  +
Sbjct: 85  IVILYNISDVGNIGAIVRSAYALGADGIILVA-KSVAMDGVIRASSGAALDMKIVLNDDI 143

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            S + E      +IYA+ +   +                  I +     +I G E +G+ 
Sbjct: 144 LSMINELKQKGFYIYASASGGSDIH---------------TIKTKDKKVLIMGSEGFGIA 188

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            + +   +  +   ++  F SLN+S A  ++ 
Sbjct: 189 PKVLKKCDECVGIKMHNDFDSLNVSAAFAILC 220


>gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 279

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G     +FG E WGL  E  AL++A++  P++    SLN++ A  + ++      
Sbjct: 219 GGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQ 273


>gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
 gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
          Length = 250

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 23/164 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R+     +    +V P+D     +   R  +  A   +  + V +
Sbjct: 104 ILDGVTDPHNLGACLRSADAAGVHA-VIV-PKDKSVQLTSVVRKVACGAAETVPLIAVTN 161

Query: 76  ---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               ++E + D   +I  T        + +  PK    +            I  G E  G
Sbjct: 162 LARTMRE-LQDRRIWIVGTAG---EATQDLYQPKLTGPL-----------AIAMGAEEKG 206

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           L        + +IS P+     SLN+S A  + ++E +      
Sbjct: 207 LRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVVRQRQAK 250


>gi|256394616|ref|YP_003116180.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256360842|gb|ACU74339.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 272

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 17/147 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N G V R         L +V        + KA  +SA +   +       + +EA+  
Sbjct: 131 PGNAGTVIRCADAAG-ADLVIVTSESVDVYNPKAVRASAGSLFHVPVAVGV-SAQEAVDM 188

Query: 84  LHFIYATTARNRNNFKSVLAPKEA-AIVLNERIFSGQNVG---IIFGRERWGLTNEEIAL 139
           L          R     VLA     A  L++ + +G+       +FG E WGL    +AL
Sbjct: 189 L----------RAAELRVLAADGGGAADLDDELDAGRLAAPTCWMFGNEAWGLPEALLAL 238

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++  +  P++    SLN++ A  + ++
Sbjct: 239 ADEAVRVPIHGRAESLNLATAAAVCLY 265


>gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158]
 gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158]
          Length = 260

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 18/170 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           A  L        ++L   Q   N+G + R+     +       P   +  S K   S   
Sbjct: 104 AQPLPERVAHTSVVLDGVQDAGNVGSILRSAAAAGVRH-VFCAPGTAYAWSSKVLRSGMG 162

Query: 64  ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A  ++    +  ++  + +A                  +                 Q V 
Sbjct: 163 AHFLLS---IHEDVAPDVLAG------------RLDVPIALTDSHGAQAIYDCDLSQPVA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +FG E  G++      +   ++ P      SLN++ A  + ++E +   
Sbjct: 208 WVFGNEGAGVSAFWRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257


>gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 258

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 26/176 (14%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P++    K P ++IL       N G + R      +  + +        +  A  +SA A
Sbjct: 99  PEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGA 158

Query: 65  DCVIDSVRVFS--NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
              + +V++    NL   +     + +    AT               E A  L   I  
Sbjct: 159 ---LYNVKICKEKNLAHTVDFLQQSGVSVFSAT---------------EKAEKLIYDIDF 200

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                ++ G E  G++ E +  S+  I  P+     SLN+S A   +++E +   +
Sbjct: 201 KIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 256


>gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM]
          Length = 264

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 26/176 (14%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P++    K P ++IL       N G + R      +  + +        +  A  +SA A
Sbjct: 105 PEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGA 164

Query: 65  DCVIDSVRVFS--NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
              + +V++    NL   +     + +    AT               E A  L   I  
Sbjct: 165 ---LYNVKICKEKNLAHTVDFLQQSGVSVFSAT---------------EKAEKLIYDIDF 206

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                ++ G E  G++ E +  S+  I  P+     SLN+S A   +++E +   +
Sbjct: 207 KIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 262


>gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C]
 gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C]
          Length = 287

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G     +FG E WGL  E  AL++A++  P++    SLN++ A  + ++           
Sbjct: 221 GGPSAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAPGG 280


>gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
 gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
          Length = 297

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L       N+G V R+   F    + + N R    +  A  +SA A   +   +   N
Sbjct: 149 VALDHISDPRNLGAVIRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQ-APN 207

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L   + +          +R      L  +       +     + + ++ G E  GL+   
Sbjct: 208 LTRTLKEWQ--------DRGLLLVGLDAE--GDTSLDDFVGTEPLALVVGSEGKGLSRLV 257

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + ++S P++    SLN+S A  +++ E     
Sbjct: 258 RESCDVVVSIPMSGQVESLNVSVATGVVLGEIARQR 293


>gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 325

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 10/160 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + S    +I+L       N+G   R+   F    + +   R    +      SA A  ++
Sbjct: 171 EPSHPPLLIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIV 230

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +   NL  A+  L    A                   + L +   + Q + ++ G E
Sbjct: 231 PVAK-ARNLTHALQQLQAEGAFAIGLDGGGD---------VDLPDLTLADQPLVVVTGSE 280

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++       + I+S P++    SLN + A  + +++ 
Sbjct: 281 GKGISRLVRETCDQIVSIPIDKRMESLNAAVATGIALYQI 320


>gi|294675164|ref|YP_003575780.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294471809|gb|ADE81198.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 176

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 17/170 (10%)

Query: 7   QLQNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           + + + K P+I++   V      N+G V R    F +  + L       P  +   ++  
Sbjct: 16  EFKQADKLPLIVVLDDVRSMH--NVGSVFRTGDAFRIEAVYLCGITSTPPMAEIHKTALG 73

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNV 121
           A+  +   + F    EA+  L             ++     +     + +       +  
Sbjct: 74  AEDSVTW-KYFDTALEAVETL---------KAEGYEVYSVEQAHGSTMLQNFTPINNKKY 123

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ G E  G+  E I  S+  +  P      S+N+S    +++W   +N
Sbjct: 124 AVVLGNEVKGVHQEVIDASDGCLEIPQFGTKHSMNVSVTGGIIIWHFAKN 173


>gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           salivarius SK126]
 gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           salivarius SK126]
          Length = 247

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V+IL       N G + R      +T + +   R    +     +S  A   I   R
Sbjct: 99  NPLVLILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIAR 158

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +++ T                     ++   +G  V +I G E 
Sbjct: 159 VTNLSQTLDKLKEAGFWVFGT--------------DMDGTPSHKWNTAG-KVALIIGNEG 203

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +I+ P++    SLN S A  ++++E   N +
Sbjct: 204 KGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNRL 247


>gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 243

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
           P + ++ + P ++IL       N+G   R      +    +V PRD     +   +  + 
Sbjct: 86  PAMLDNLETPFLLILDGVTDPHNLGACLRNADGAGVHA-VIV-PRDRSAQLNATVKKVAC 143

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   +  + V +             A T R     N   V    EA   L +   +G  
Sbjct: 144 GAAETVPVISVTN------------LARTMRLLQERNIWIVGTAGEADHTLYQSKLTG-P 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQR 242


>gi|170077725|ref|YP_001734363.1| rRNA methylase [Synechococcus sp. PCC 7002]
 gi|169885394|gb|ACA99107.1| rRNA methylase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 262

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 15/127 (11%)

Query: 46  VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
           VNP     + K   +S  A     +  V     E +           R R     ++A  
Sbjct: 145 VNP----SNPKVLRASVGA-WFQTTPVVIPTFAEQLQ----------RYRAQGVQIVATL 189

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
             A      +   Q   I+ G E  GL+    +L+N  +  P+ P   SLN++ A  LM+
Sbjct: 190 PQATKTYWDVDWRQPSLILLGNEGAGLSPAIASLANETVQIPMGPGVESLNVAIACALML 249

Query: 166 WECMENS 172
           +E     
Sbjct: 250 YEARRQR 256


>gi|311271147|ref|XP_001927654.2| PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa]
          Length = 1628

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 27/184 (14%)

Query: 3    PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
              A +L  S    V++  L+D     N+G + R    F  + L  V+       ++ +  
Sbjct: 1459 DRAARLGKSISRLVVVASLID--KPTNLGGLCRTCEVFGASALV-VSSLQCIRDKQFQHL 1515

Query: 61   SANADCVIDSVRV-----FSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNE 113
            S +A+  +  V V        L+E  A+ + I     TAR+ +  +    P         
Sbjct: 1516 SVSAEQWLPLVEVKPPQLIDYLQEKKAEGYTIVGVEQTARSVDLTQ-FCFP--------- 1565

Query: 114  RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                 +   ++ G ER G+    I   +  +  P   +  SLN+  +  L++WE     +
Sbjct: 1566 -----EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQL 1620

Query: 174  VSSE 177
            +   
Sbjct: 1621 LRPG 1624


>gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 382

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 14/151 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    LV       S  A  ++   A+ V        +    +A+
Sbjct: 245 PHNLGGIMRSCAHFGVKG-ILVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLAE 301

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      R  +  V         L++     + V I+ G+E  GL++      +  
Sbjct: 302 F---------RRAGYTIVTTSSHKGTALSQATLPAKTV-IVLGQEGDGLSDSAWQQGDVK 351

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +S        SLNIS A  +++ E    +  
Sbjct: 352 VSIGGTGKVESLNISVATGILLSEWWRQNQA 382


>gi|302336862|ref|YP_003802068.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301634047|gb|ADK79474.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 289

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 21/171 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G + RA  +F + ++ L +P    P   +A+ S+     ++   R  S+ +E    
Sbjct: 129 PFNVGSIFRAAESFGVRKIFL-SPGSADPRHPRAQRSAMGCVDIVPWCR--SSFEE---- 181

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA- 142
                    +       ++A +     L+E  F    + ++ G E  G++   +  ++  
Sbjct: 182 --------MQTHTTSNKIVALETGGCPLHEFHFPAGGI-LVIGSEELGVSPALMEQASRS 232

Query: 143 --IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
              +S        SLN+S A  +++         + E  V+   T  + GE
Sbjct: 233 GGAVSIETGGRKGSLNVSVATGIVLHAWFSQ-FRAVEPGVRRHETTISDGE 282


>gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 250

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 11/155 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G   R+        + L        +   R ++A A   +  V V           
Sbjct: 104 PHNLGACLRSAEAAGANAVVLPKDHACPVNATVRKAAAGAASRLPIVVVT---------- 153

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
           + + +        +       EA+  L E    G  + ++ G E  GL        + + 
Sbjct: 154 NLVRSMVGLQEYGYWIAGLAGEASQDLYEADLRG-PLALVLGSEEKGLRRLVREHCDFLW 212

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             P+     SLN+S A  L ++E        ++ +
Sbjct: 213 HIPMCGAVESLNVSVAGALALFEARRQRRTQAKPD 247


>gi|225022603|ref|ZP_03711795.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944511|gb|EEG25720.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 266

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 33/162 (20%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V      N G + R         +          S KA  +SA +   +         
Sbjct: 123 VAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVP-------- 174

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIF 125
                         AR+R+  + +   K   + L      G+                +F
Sbjct: 175 -------------VARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLARPTAWLF 221

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           G E  GL  E + L++  ++ P+     SLN++ A  + +WE
Sbjct: 222 GNEAHGLGPELMELADHRVAIPIKGSAESLNLATAASICLWE 263


>gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           S110]
 gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           S110]
          Length = 248

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G   R           ++ P+D      A  +  ++ A   +    V +
Sbjct: 103 VLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAAGINATVAKVASGAAETVPYFMVTN 160

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L E      +   T+              + A     +    + + ++ G E  G+
Sbjct: 161 LARTLNELKERSIWCVGTS--------------DDAPGTLYQSDLKRPLALVLGAEGEGM 206

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                   + ++S P+     SLN+S A  + ++E M     
Sbjct: 207 RQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQRSA 248


>gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
           6725]
          Length = 270

 Score = 55.5 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++    Q   N+G + R    F    +          + K   ++  +   +  +R   
Sbjct: 126 VVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTTRATMGSLFHLQIMREAE 185

Query: 76  N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L + + D  F              V  P     +   +I   +   I+ G E  G++
Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKIVPDKRFCIVIGNESEGVS 232

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    ++   I  P+     SLN + A  ++++E  + 
Sbjct: 233 DSFAKVATRKIKIPMVGETESLNAAVAASIVLYELRKR 270


>gi|88803205|ref|ZP_01118731.1| spoU protein [Polaribacter irgensii 23-P]
 gi|88780771|gb|EAR11950.1| spoU protein [Polaribacter irgensii 23-P]
          Length = 225

 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 67/168 (39%), Gaps = 22/168 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+N  +   ++L D     N   V R    F +  +  +  +  + ++ +R  +  +   
Sbjct: 26  LENRTRHFTVVLEDIFQPHNASAVVRTCDIFGIQDVHAIENK--YNTKVSRHVAKGSQKW 83

Query: 68  IDSVRV---FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           ++  R      N KE +  L      I AT+            P   + VL +  F+ + 
Sbjct: 84  LNQYRYRSDGDNTKECLDGLKEKGYQIIATS------------PHNNSCVLQDFDFT-KK 130

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +FG E  G+++  I  ++  +  P+     SLNIS A  +++ E 
Sbjct: 131 TAFVFGVEAEGVSDCVIENADGFLKIPMVGFTESLNISVAAAIILQEV 178


>gi|194366972|ref|YP_002029582.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
           R551-3]
 gi|194349776|gb|ACF52899.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 278

 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 29/180 (16%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKA 57
           P A  L++  +GP + L    V      N G + R+  +F +  L L            A
Sbjct: 116 PLAQWLEDLGEGPALALWLDGVG--NPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAA 173

Query: 58  RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           R +   A+ V      D+ +  + L+ A               + F++ L  +       
Sbjct: 174 RVAEGGAESVPLVQLPDNAQAMAQLRAA--GFGLAATLVEGGEDVFRASLPAR------- 224

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   +  + G E  G+     +  +  +S P +    SLN++ A  +++ +     
Sbjct: 225 --------LVYVMGAEGEGMDRSLASECDLQVSIPGSGAVESLNVASATAVLLAQWASRR 276


>gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3]
 gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282934545|ref|ZP_06339797.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3]
 gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281301383|gb|EFA93675.1| rRNA methylase [Lactobacillus jensenii 208-1]
          Length = 255

 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 15/144 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82
             NIG + R         + L        + K + +   +   +      +   +++   
Sbjct: 122 PGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHLPIIKADLLKTIEQFKE 181

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +   +YA+          VL  +   +   E+    + + +I G E  G+++E + L++ 
Sbjct: 182 NYIPVYAS----------VLDDEAKELPDFEKT---KELALIIGNEANGVSDEAVNLADE 228

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN + A  +M++
Sbjct: 229 KLFIPIKGQAESLNAAIAAGIMIY 252


>gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 276

 Score = 55.5 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 13/164 (7%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
               V++L   Q   N G + RA   F  T +  +       + K   +SA +   +   
Sbjct: 125 RPALVVVLDGLQDPGNAGTIVRAAEAFGATGVVFLKGAVSPYNPKTLRASAGSLFRVPF- 183

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERW 130
                    +  +    A TA  ++  +     P  A+      +   +  G++ G E  
Sbjct: 184 ---------LHGVDAAVACTALAQHQVELFAGVPAGASSRTLAAVDLARPCGLVIGNEAH 234

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           G++    A ++  +S P      SLN + A  ++++E     ++
Sbjct: 235 GVSRGLRAAAHD-VSIPTVG-VESLNAAMAASILLYEARRQRML 276


>gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 246

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 20/162 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           + IL + +   N+G + R         + +   R    +     +SA A       +V  
Sbjct: 100 IFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTN 159

Query: 74  -FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               ++E     L F+ A                +       R+     +G++ G E  G
Sbjct: 160 LVKTMEELKEKGLWFVCA----------------DMGGETMYRLNLTGPIGLVIGNEGTG 203

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +        + + S P+     SLN S A  ++ +E +   +
Sbjct: 204 VGRLVKEECDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRL 245


>gi|299137092|ref|ZP_07030275.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
 gi|298601607|gb|EFI57762.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
          Length = 276

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 18/165 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVR- 72
             ++L D Q   N G + R+   F+++++  V P      + KA  +SA +   +  VR 
Sbjct: 117 VCLVLEDIQDPGNFGTLIRSAEAFSVSRVY-VTPGTVNQWNPKAMRASAGSVFRMPVVRG 175

Query: 73  VFSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             S +K A+ A+   +YA  AR+         P   A +L           ++ G E  G
Sbjct: 176 PLSEIKSALGAEGVRLYAAVARSSGA-----TPVMQAKLLA-------PCALMIGNEGAG 223

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L+   + L++  +  P +    SLN + A   +++E    ++  +
Sbjct: 224 LSMTALELADEQVHIPCSVE--SLNAAIAGSTLMYESFRQNLHEA 266


>gi|240140185|ref|YP_002964662.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           AM1]
 gi|240010159|gb|ACS41385.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           AM1]
          Length = 269

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 14/168 (8%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P    L  SA  P ++  LV     +N+G + R    F    + L          KA   
Sbjct: 107 PSPEALIPSAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SA A   +   R  S    A+ DL       A         L P        + +     
Sbjct: 167 SAGAALTVPFARAPS--GAALLDL-------AERHALTPLALTP--GGSETLDALEPPAR 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             ++ G E  GL    +A +   +   + P F SLN++ A  + +   
Sbjct: 216 ALLLLGTEGPGLPESLMARARR-VRIAMAPGFDSLNVATAGAIALHHL 262


>gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
           HTCC2155]
 gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
           HTCC2155]
          Length = 197

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 27/176 (15%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L++     V+IL   Q   N+G   R      +  + +  P+D     ++   S S    
Sbjct: 41  LESKKTPFVLILDGVQDPHNLGACIRTANGAGVDAVII--PKDNAAPITDTVMSVSCGGA 98

Query: 66  ------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                  V++  R    LK+      +I  T+              + A           
Sbjct: 99  SNTAIFRVVNIARTMEKLKKI---GVWIAGTS--------------DKADQDLYNSDLKG 141

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            V ++ G E  G+        + +++ P+    P LN+S A  + ++E +     S
Sbjct: 142 PVALVMGSEGKGMRRLTEEKCDFLLTIPMGGTVPCLNVSVATGVCLYEIVRQRAES 197


>gi|320160887|ref|YP_004174111.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994740|dbj|BAJ63511.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 193

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 58/150 (38%), Gaps = 13/150 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI---AD 83
           N+G + R+     ++++ L        + +   ++  A+  +D     + L  A+   +D
Sbjct: 53  NVGAIFRSADGAGVSRIHLCGITPTPENPQVVKTALGAEKSVDWEYHANGLTLALRAKSD 112

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
            + + A      +     + P          +   + + ++ G E  G+  +   L + +
Sbjct: 113 GYHLIALEGGENSLPLHTILP----------LNDSRPILLVAGNEVTGIDPDIFELCDTV 162

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              P+  +  SLN++ A  + ++    + +
Sbjct: 163 TFLPMFGIKNSLNVAVATGIALYLLRLSQV 192


>gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629]
          Length = 302

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + S + + I+ G E  GL  + I   +  +  P++    SLN++ A  +  WE  +
Sbjct: 247 LNSEERLAIVLGTEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 251

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            ++G++ G E  G++       + I S P+N    SLN S A  ++ +E +   I    
Sbjct: 189 GSIGLVIGNEGDGVSESVKKNCDFIASIPMNGDIDSLNASVACGVLAYEIVRQRIAKGA 247


>gi|302866851|ref|YP_003835488.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302569710|gb|ADL45912.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 294

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 15/188 (7%)

Query: 6   PQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           P  Q  A+GP ++  L   +   N G V R         +          + K   +SA 
Sbjct: 117 PLEQAVARGPRLVAVLAGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASAG 176

Query: 64  ADCVIDSVRVFSNLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +   +D VR    L   EA+      I ATT    ++   +      A            
Sbjct: 177 SLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLAA----------P 226

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
              +FG E  GL +E  A ++A +  P++    SLN++ A  + ++       V      
Sbjct: 227 TAWLFGSEAHGLPDELTAAADARVRVPLHGRAESLNLAAAAAVCLYSSARALRVPRGTRE 286

Query: 181 KEQNTPAT 188
               + ++
Sbjct: 287 TAGESASS 294


>gi|148273189|ref|YP_001222750.1| putative rRNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831119|emb|CAN02071.1| putaive rRNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 266

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTNEEIALSNAIISFPVN 149
           R +     VLA       L     SG        +FG E  GL +E +AL++  +  P+ 
Sbjct: 182 RVKAAGLQVLAADVKGDDLLAERTSGGLAWPTAWLFGNEARGLQDEHLALADRAVVVPIY 241

Query: 150 PLFPSLNISQAVLLMVWE 167
               S+N++ A  + ++E
Sbjct: 242 GQAESMNLATAASVCLYE 259


>gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P]
 gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P]
          Length = 265

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 18  ILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ILV    +   NIG + R     N+  + + NP+    +     +S              
Sbjct: 117 ILVAEGIEKPGNIGALLRTADAANVAAVFIANPKSDLYNPNIIRASIGCVFTTQIA--VG 174

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +E I+ L      +YATT +N N +               +    +   I  G E  G
Sbjct: 175 TSEEIISYLTENNIRLYATTLQNSNEYH--------------KENYTEASAIAVGTEDTG 220

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           LT      +   I+ P+     S+N+S A  ++++E     
Sbjct: 221 LTAVFRERATQNINIPMQGEIDSMNVSVAAAIVLFEAKRQR 261


>gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 290

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKE--AIAD 83
           N+G   R+     +    LV P+   P   ++   S      I   R+ S   +  A+ +
Sbjct: 146 NVGAAFRSATALGV-DAVLVTPQCADPLYRRSVRVSMGTVFQIPWTRLDSWPGDITALQE 204

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F  A+ A + ++        +    L      G  + ++ G E  GL +  IA S+  
Sbjct: 205 AGFTVASLALSDDSVS-----LDDFASLPALQGPGARLAMVMGTEGDGLGHRTIAASDYT 259

Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166
           +  P++    SLN++ A  ++ W
Sbjct: 260 VKIPMDHGVDSLNVAAASAVVFW 282


>gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
           13031]
 gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
           13031]
          Length = 248

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 15/168 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             ++   +++L       NIG + R         + LV  +    +     +SA A   +
Sbjct: 94  PRNSSPLLVVLQGLDDPHNIGAIIRTAEAVAADAVVLVEGKGSPVNAVVHKASAGA---L 150

Query: 69  DSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             +R+    +L  A+  LH               V+A    A +        +   I+ G
Sbjct: 151 SHMRICKVKSLVRALEYLH----------EKDIQVIAADMDAELNYNDADMKRATAIVLG 200

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            E  G+  E +   + ++  P+     SLN+S    ++++E M   ++
Sbjct: 201 MEGSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLYESMRQRLL 248


>gi|294783897|ref|ZP_06749219.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294479709|gb|EFG27488.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 261

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 21/166 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----- 64
           N     ++IL D     N+G + R     N   + L        +EK   ++  +     
Sbjct: 107 NCLSNNLVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDAYNEKVIRATMGSILNVN 166

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              ++   +   LKE   + + I AT        K  L           +I   +   +I
Sbjct: 167 LFYLEKQEIIKLLKE---NNYSIIAT-----YLDKEALP--------YNKIKLKEKNAVI 210

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           FG E  G+++E +++S+     P+     SLN++ A  +++++  E
Sbjct: 211 FGNEGRGISDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFRE 256


>gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 302

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 11/171 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G V+ L +     N+G V R++  F    + +   R    +     SSA     +   +V
Sbjct: 143 GMVVFLDNITDPRNLGAVIRSVAAFGADGVVIPERRSASVTAVTWRSSAGTAARVPVAKV 202

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +N+  A+                    +         ++       V I+ G E  GL+
Sbjct: 203 -TNMTRALKQFQ----------EAGYQAIGLDAGGEHTHDSYDGTGPVVIVVGSEGKGLS 251

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
                  + I++ P+     SLN S A  +++ E        +   V E+ 
Sbjct: 252 RLVKETCDTIVTIPMEGWVESLNASVAAGVVLAEFARQRRNKAAAAVAEEQ 302


>gi|229820769|ref|YP_002882295.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566682|gb|ACQ80533.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 167

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 22/143 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFSN 76
           I   P++  N G   R       T L LV P  G+   +A+   A  D   +  V V  +
Sbjct: 9   IFHTPRIPGNTGAAIRLAALTGAT-LHLVEPL-GFDMSEAKLRRAGLDYHDLAHVVVHPD 66

Query: 77  LK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           L    +A+     +YA T                A    E +       ++FG E  GL 
Sbjct: 67  LDAALDAVGSGTRVYAFTG--------------HAERSFEDVRYAVGDALLFGAEPTGLP 112

Query: 134 NEEIA--LSNAIISFPVNPLFPS 154
            E +A       +  P+ P   S
Sbjct: 113 PEVLADPRLTDRVRIPMLPGLRS 135


>gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4]
          Length = 280

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L +     NIG + R+     +  + L +        +A   S      I       N 
Sbjct: 125 VLENVMNPTNIGAIFRSAAALGMDAVLLTSGCSDPLYRRAARVSMGTVFQIPWTFFPKNA 184

Query: 78  K------EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                  EA+  L F  A  A   ++  S+  P         ++ + + + +I G E  G
Sbjct: 185 DLSCGGLEALRSLGFQTAAMALKEDSV-SIDDP---------KLLAAEKLAVILGTEGDG 234

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +  I   +  +  P+     SLN++ A  +  WE  +N 
Sbjct: 235 LASATIGGCDHTVMIPMAHGVDSLNVAAASAVAFWELTKNR 275


>gi|254700959|ref|ZP_05162787.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 5 str. 513]
 gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
          Length = 297

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 33/183 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--- 64
           L+       + L   +   N+G V R         + L+       S +   ++  +   
Sbjct: 137 LKPKGNDVYVALDRVRDPGNLGTVIRIADAVGAKGVILIGDTTDPYSLETVRATMGSVFS 196

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                      ++  + FS L         +  T  +   +++++              +
Sbjct: 197 VPLYRASEADFLNWRKGFSGL---------VVGTHLKGAVDYRTI-------------PY 234

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + + V +I G E+ GL +      + +   P      SLN++ A  +M++E    ++   
Sbjct: 235 ANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRREALTLD 294

Query: 177 EKN 179
           E+ 
Sbjct: 295 ERG 297


>gi|122936696|dbj|BAF45162.1| putative RNA methyltransferase [uncultured bacterium]
          Length = 220

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 69/187 (36%), Gaps = 35/187 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--------KARSSSANA 64
           K  + ++ DP   +NIG V R +    + ++ +V+PR+  P +            +S +A
Sbjct: 23  KNLIAVIEDPSNIKNIGTVIRNVNALGVEKVYVVDPRNALPDDWQEMREKRSLSKTSVSA 82

Query: 65  DCVIDS---------------VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPK 105
               +                V+ F + +  I  L         T+   +    ++L   
Sbjct: 83  VKWSEKRSLSKTSVSAVKWSFVKRFDSTEACIEHLEENRFVSIVTSPHIKGKKNAILGEV 142

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           +              + + FG E  G+++  +  S   +S P+  +  SLN+     +++
Sbjct: 143 DY--------TEHYKLAVWFGNEARGISDLAVEHSEMCVSIPMFGMIESLNLGTTSGIVL 194

Query: 166 WECMENS 172
           +E  +  
Sbjct: 195 YEVTKQR 201


>gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 267

 Score = 55.1 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 91  TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150
           T R        + P  AA  L     +G+ V ++ G E  GLT E +   +     P+ P
Sbjct: 187 TLREHGFQLIAMTPDPAARNL-ASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTP 245

Query: 151 LFPSLNISQAVLLMVWECMENS 172
              SLN++ A  +  +E +  +
Sbjct: 246 GTDSLNVATAAAMAFYERVRTA 267


>gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
           DSM 2926]
 gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
           DSM 2926]
          Length = 236

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 19/162 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V++L   Q   N G + R+   F +  + +        +E    +S  A   +D ++
Sbjct: 87  KSIVLVLDGVQDPRNFGAIVRSAEIFGVKGIIIPERNSVKINETVVKTSTGAIEHVDIIK 146

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +N+ EAI  L     ++Y      +  +     P                  ++ G E
Sbjct: 147 V-TNISEAIQKLKKLDYWVYGAEGSGKKCYYDEKYP--------------NRTALVMGGE 191

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             G+  +     + +++ P+     SLN+S A  +++ E  +
Sbjct: 192 GSGIRKKVKENCDILVNIPMYGKINSLNVSVAGGILLSEIAK 233


>gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 321

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 7   QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           +  NS   P+I+ L       N+G V R+   F    + L   R    +  A  +SA   
Sbjct: 162 EAHNSGLPPLIVALDGVTDPRNLGAVIRSAAAFGAHGVILPQRRSAGLTAVAWRTSAGTA 221

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   R  +    LK+  ++   +    A             ++ I  +E   +   + 
Sbjct: 222 AKLPVARAVNLTRTLKDLKSEGLMVVGLDA-------------DSDITSDELELATGPLV 268

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++ G E  GL+       +  +S P+     SLN S A  +++ E 
Sbjct: 269 VVVGSEGRGLSRLVRETCDQTVSIPMAGSVESLNASVAAGIVLAEV 314


>gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 223

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 21/172 (12%)

Query: 18  ILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +LV+      N+  + R      + +   ++  +   +  + +  +     +++     N
Sbjct: 24  VLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAVKTFNSTAQGSQKWVKLNN---HEN 80

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              AI+DL      +Y TT  + +                      QN   + G E+WGL
Sbjct: 81  TITAISDLKNKGFKLYGTTLNSESVDYRNFD-------------YSQNTCFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           + E I++ +  I  P+  +  SLN+S A  ++++E +       +     + 
Sbjct: 128 SKEIISMVDQSIFIPMRGMVQSLNVSVAASILLFEAIRQRKNKGKLPTNGEG 179


>gi|50365192|ref|YP_053617.1| rRNA methyltransferase [Mesoplasma florum L1]
 gi|50363748|gb|AAT75733.1| rRNA methyltransferase [Mesoplasma florum L1]
          Length = 179

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 67/165 (40%), Gaps = 19/165 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++ +N+  + R     N  +L ++ P      ++  + ++     +   +++ +
Sbjct: 7   IVLYEPEIAQNVAAIIRTCVATN-AKLHIIEPLGFIFKKEEMNRASAGTFDLVEYQLYDD 65

Query: 77  LKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++       +         +R   K        +          + V ++FG+E  G+ 
Sbjct: 66  WEDFCEKNPSIDLFC----ISRYGEKPHSDFDFNSYQ--------KPVFVMFGKESTGIP 113

Query: 134 NEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            ++I   N   +F  P++P   S+N++  V ++ +E +      +
Sbjct: 114 -KQIIKDNYENTFRLPMSPQTRSINVANTVGIVTYEILRQWDYPT 157


>gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 235

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 11/159 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V+IL + Q   N G + R+   F +  + +        +E    +S  A   +D V+
Sbjct: 87  KSIVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRVNETVVKTSTGAIEHVDIVK 146

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V +N+ EA+           + +     V   +        +        ++ G E  G+
Sbjct: 147 V-TNISEAL----------LKLKKLDYWVYGAEGEGSKDYSKEKYPSRTALVLGSEGNGI 195

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +     + +I  P+     SLN+S A  +++ E +++
Sbjct: 196 RKKVKENCDVLIKIPMYGKINSLNVSVAGGIILSEIVKS 234


>gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
           2308 A]
 gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
           2308 A]
 gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 303

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 202 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 250

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294


>gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
           EX-H1]
 gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
           EX-H1]
          Length = 242

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 12/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL      +N+G + R       + + +   R    +E    +S  A   +   +V  N
Sbjct: 96  VILDHITDPQNVGNIIRTAEVLGSSGIIVPRERSSPINEVVVKASTGAVFYLPIAKV-GN 154

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +++ I                 K +         L           I+ G E  G++   
Sbjct: 155 IRQFIDKFKKRGGWVISVEKGGKPIHKVSFPFPAL-----------IVLGSEGKGVSKTV 203

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  S+ I+S P+     SLN+S A  + +WE  + 
Sbjct: 204 LENSDMIVSIPMFGKITSLNVSAAAAISLWEVSKQ 238


>gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative
           [Synechococcus sp. PCC 7335]
 gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative
           [Synechococcus sp. PCC 7335]
          Length = 365

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 20/178 (11%)

Query: 6   PQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            Q +N A+ PVI+         N+G + R+        + +   R    +      SA A
Sbjct: 181 QQAKNKARRPVIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQRRAVGVTSTVAKVSAGA 240

Query: 65  DCVIDSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              I   RV  NL  A+     +  +IY  TA      +S+     +A V+         
Sbjct: 241 LENIPIARVI-NLGRALEYLKSNSFWIYGLTA---EAAQSIHTTDFSAPVV--------- 287

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             ++ G E  GL+     L + ++S  ++   PSLN S A  + ++E    + +    
Sbjct: 288 --LVVGAEGSGLSLSVQNLCDQLVSIELSGKTPSLNASVATGMALYEIYRQTWIDKLP 343


>gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 288

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 7/172 (4%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +  +    V +L   +   N G V R         + L +      + K+  +S  + 
Sbjct: 117 EDILAARPKLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSL 176

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        +++A+  L       A  R          +    L+     G     +F
Sbjct: 177 FHLPVAVGVP-VEQAVEGLR-----AAGVRILAADGAGEDDLDAELDAGTM-GTPSAWVF 229

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E WGL  E  AL++A++  P++    SLN++ A  + ++           
Sbjct: 230 GNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCLYASARAQRAPGG 281


>gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 256

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 11/159 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + Q   N+G + R+   FN+  +  +N      + K   S+  +   +    V ++
Sbjct: 109 VILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMGSIFHLP---VVND 165

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++   + L  +       + +   +L+    A          +N  +IFG E  G+    
Sbjct: 166 VEP--SRLFHVL------KKHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNRLL 217

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               ++    P++ +  SLN+S A  + ++E     ++ 
Sbjct: 218 DEFIDSSFKIPMDGMAESLNVSVAASICLYESERQRLIK 256


>gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 264

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 11/158 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  I L   Q   N+G + R      +  + L+       ++K   S+ +A   +  + +
Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSA---LHKIPL 171

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + ++   ++ LH I A      +N  + +   E +      +   +   ++ G E  G+T
Sbjct: 172 YEDIT--LSMLHDIVA-----ESNMTTYVTALENSEP-YHSVNYAKRTMLVLGNEGNGVT 223

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E + L    I  P+     SLN+S A  L +++  E 
Sbjct: 224 PEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQ 261


>gi|118138229|pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The
           Trmh Family From Porphyromonas Gingivalis
          Length = 257

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 20/177 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P+     +G  ++L   Q   N+G + R    F +  + L        S K   +S 
Sbjct: 94  PAEPE--PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASX 151

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QN 120
            A       RV          L     T A  R     V         L E       + 
Sbjct: 152 GAL-----ARVQPT------PLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEP 200

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172
             ++ G E  G++ E  A     ++ P +         SLN++ A  ++  E    S
Sbjct: 201 AILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 257


>gi|90578961|ref|ZP_01234771.1| 23S rRNA methyltransferase [Vibrio angustum S14]
 gi|90439794|gb|EAS64975.1| 23S rRNA methyltransferase [Vibrio angustum S14]
          Length = 155

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 32/158 (20%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +  +     R                    + +  +
Sbjct: 10  CIGLFNPKTPENVGSVMRAAGCYGVNSVFYTGTRYDH-----------------AAQFCT 52

Query: 76  NLKEAIADLHFIYATTARNRNNFKSV---LAPKEAAIVLNERIFSG----QNVGIIFGRE 128
           + K+A  D+  I        +  K +     P    ++   +        +    IFG E
Sbjct: 53  DTKKASLDIPLIG-----VEDLKKIIPIGCVPVAVDLIEGAKALPDYKHPKRAFYIFGPE 107

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L  E        I  P N    S+N++ AV ++++
Sbjct: 108 DGTLKKEITDFCRETIYVPTN---GSMNLAAAVNVILY 142


>gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 255

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     ++ + +   R    +     +S  A   +   RV        +
Sbjct: 115 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 173

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           A+ D  + I+ T     +  K                 +   + ++ G E  G++   + 
Sbjct: 174 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKIVLVIGNEGKGISPLLLK 218

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +  ++ P+     SLN S A  +++++   + 
Sbjct: 219 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 252


>gi|291549718|emb|CBL25980.1| rRNA methylases [Ruminococcus torques L2-14]
          Length = 285

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 28/162 (17%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+    ++  + L +        +A   S      I    +  + +      
Sbjct: 136 PTNVGAIFRSAAAMHIDTVLLTSGCSNPLYRRASRVSMGTVFQIPWTFIQDDKE---RRC 192

Query: 85  HFIYATTARNRNNFKSV--------LAPKEAAIVLNE--------RIFSGQNVGIIFGRE 128
                     R +   V        L  K AA+ L +        ++ S + + +I G E
Sbjct: 193 D---------RKDIWPVQAIENLKALGYKTAALALTDDSVSIDDPQLMSEEKLAVILGTE 243

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             GL  E I   +  +  P++    SLN++ A  +  W+  +
Sbjct: 244 GDGLMQETIKACDYTVKIPMSHGVDSLNVAAASAVAFWQLRK 285


>gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
 gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
          Length = 275

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 13/156 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL + Q   N+G + R      +T + +        + K   S+  A   +  V    +L
Sbjct: 130 ILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRMPFV-YVEDL 188

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +E I         T + +N                E    G     + G E  GL  EEI
Sbjct: 189 RETIH--------TLKEKNIKSYAAHLDGKNTYDKEDYRQG--TAFLIGNEGNGL-REEI 237

Query: 138 ALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A   +  I  P+     SLN + A  ++++E     
Sbjct: 238 AQCADTWIRIPMCGQVESLNAAVAATVLMFEVSRQR 273


>gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
 gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
          Length = 258

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 21/158 (13%)

Query: 8   LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L +    P ++L+       N+G + R+   F      ++ PR    + +  + +  A  
Sbjct: 103 LGDGRTAPRVVLLDRVTDPHNVGAILRSAEVFGAR--AVIAPR-HHAAPETGALAKTASG 159

Query: 67  VIDSVRV--FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            ++        NL +AI +L      +                  E  I         + 
Sbjct: 160 ALERQPYLRVRNLADAIIELQAMGYLVLGLAGEA-----------EMTIEAAMEGRRDRP 208

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           V ++ G E  GL      + +A++       F SLN+S
Sbjct: 209 VALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVS 246


>gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
           moniliformis DSM 12112]
 gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
           moniliformis DSM 12112]
          Length = 232

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 19/159 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL   Q   N G + R+   F ++ + + +  +   +E    SS  A   +D V+V +
Sbjct: 89  IVILDQIQDPRNFGAIIRSCECFGVSGIIMQDRNNVKVTETVVKSSTGAIEHVDIVQV-T 147

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           N+ ++I  L     F+Y   A     +     PK                 ++ G E  G
Sbjct: 148 NIADSIEKLQKYGYFVYGAEANGEKFYYEEKYPK--------------KKALVLGSEGKG 193

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +        ++I+   +     SLN+S A  +++ E  +
Sbjct: 194 MRKRVRESCDSILKIHLKGEINSLNVSVAAGILLSEMSK 232


>gi|32475415|ref|NP_868409.1| rRNA methylase [Rhodopirellula baltica SH 1]
 gi|32445956|emb|CAD78687.1| putative rRNA methylase [Rhodopirellula baltica SH 1]
          Length = 302

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 13/181 (7%)

Query: 2   TPYAPQLQNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           +P    L+     P     + LV     EN+G + R+     +    L+ P    P  + 
Sbjct: 128 SPAIEPLEKFRDSPQSSLALALVGLSDPENVGSLLRSAAALGVRD-ILLGPHTISPMTRR 186

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIF 116
               + A         F N    + DL     A+ A   ++    L     AI    RI 
Sbjct: 187 VIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLLDDTAIPLIDLSNAIQSKRRI- 245

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 ++ G E  GL  E    +    + P+     SLN+  A  + ++E         
Sbjct: 246 ------LMVGNEANGLPREIAEAATHRSTLPMRNDTDSLNVGVASAIFLYELTRLQDADH 299

Query: 177 E 177
            
Sbjct: 300 G 300


>gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
 gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
          Length = 293

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 21/180 (11%)

Query: 3   PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEK 56
           P  P+   + K    +++L       N+G + R    F     +T +R         S  
Sbjct: 129 PLPPRRLEALKESPLLLVLDQVTDPHNVGAIMRTAVAFGAGAVITTMR----HSPTESGV 184

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
              S++ A  +I  +++ +NL EA+ +LH +   +    +     L          E  F
Sbjct: 185 LAKSASGALELIPYIQI-TNLAEALGELHKLGFVSIGLDSEGPRPL----------EETF 233

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           SG  + ++ G E  GL  +     NA+    +     SLN+S A  + ++   +  +  S
Sbjct: 234 SGDKLALVLGSEGKGLRQKTRDTVNALARLDMPGEIKSLNVSNAAAIALYASRQFLLRQS 293


>gi|319951639|ref|YP_004162906.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319420299|gb|ADV47408.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 235

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 18/143 (12%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIA 82
            N   V R+   F + +  L+  + G   +   +    +   +D  R  S    +     
Sbjct: 63  HNTSAVVRSCDIFGIQEAHLIERKYGDQLDSQIAM--GSQKWVDIHRYESTKNCMDTLKQ 120

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           + + I ATT            P   + +L +    G  + + FG ER GL+ E +  ++ 
Sbjct: 121 NGYKIIATT------------PHNDSCLLEDFEIEG-KIALFFGTERNGLSEEVLKNADG 167

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
            +  P+     SLNIS +  +++
Sbjct: 168 FLKIPMVGFTESLNISVSAAIIL 190


>gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 294

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 15/160 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +    V +L + +   N G V R         + L +      + KA  +S  +   +  
Sbjct: 137 ARPRLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPV 196

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP----KEAAIVLNERIFSGQNVGIIFG 126
                 ++ A+  L          R     +LA     ++      +R   G     IFG
Sbjct: 197 AVGVP-VETAVTGL----------REAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFG 245

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 246 NEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 285


>gi|257456092|ref|ZP_05621295.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
 gi|257446550|gb|EEV21590.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
          Length = 271

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 18/153 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G V R+   F +  + +         +  A   +      I        L  A +  H
Sbjct: 126 NLGAVIRSAAFFGIEHIVISGEDAQAQLTPSAYRIAQGGMEFI-------TLYTAPSAEH 178

Query: 86  FIYATTA---RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           F+ A +    R   + ++  + K+   ++       + V ++ G E  G++ E   L + 
Sbjct: 179 FLKACSGYLMRLGADHRAYRSLKDIPSLVRA----DEAVVVVLGNEEHGISAEAKKLCDV 234

Query: 143 IISFPVNPLFPSLNISQAVLLMV---WECMENS 172
           ++    +    SLN++QA  L      E    S
Sbjct: 235 LVKISGSGAIESLNVAQAGTLFCSALAELRRES 267


>gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
          Length = 303

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAAS 201

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 202 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 250

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294


>gi|121604675|ref|YP_982004.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
           CJ2]
 gi|120593644|gb|ABM37083.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
           CJ2]
          Length = 259

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P AP LQ +     +IL   Q   N+G + R+   F   Q+  +       S K   +  
Sbjct: 108 PTAPPLQANVAS--VILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGM 165

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  V       EA+A L                V+        L+++        
Sbjct: 166 GAHFALRLVEGVD--PEALAALTV------------PIVVTSSHHGSFLHQQPIPM-PCA 210

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              G E  G++++ +A ++  +         SLN++ A  + ++
Sbjct: 211 WAMGHEGQGVSDDLMARASLKVRIDQPGGEESLNVAAAAAICLY 254


>gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
          Length = 285

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++IA L     +I+ T           +  +           +   + +I G E  G++
Sbjct: 199 AQSIATLKENQFWIFGT-------DMYGMDYRRW--------NTQGAIALIIGNEGRGMS 243

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN   A  L+++E     
Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282


>gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
 gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 20/151 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R      +  + L        + K   ++  +   +  +R   NL+E I 
Sbjct: 116 QDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGSLFHLPIIR--GNLREWIE 173

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      IY T+  N  +++ +  P+                 ++ G E  G+  E + 
Sbjct: 174 KLQEQNVPIYGTSLENGEDYRCINPPR--------------PFALLVGNEGSGVHKELLQ 219

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           ++   +  P+     SLN++ A  ++++   
Sbjct: 220 MTTKNLYIPIYGQAESLNVAVAAGILLYHLR 250


>gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 249

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 19/173 (10%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L ++A+G  ++LV    Q   N+G   R+     +T + +   +    +   R +SA A 
Sbjct: 91  LVDAAQGRALVLVLDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             I  V V +     +A            R+  K  +     A      ++S     NVG
Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ G E  GL        + ++  P+     SLN+S A  + ++E +   + +
Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQRLGA 249


>gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           maricopensis DSM 21211]
          Length = 242

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74
           V++L       N G + R+          +V  R   P S     ++A A   +   +  
Sbjct: 90  VVLLDGITDPRNFGAIIRSAEVLGAHG-VIVEERRSAPLSPVVAKTAAGATSYLPVAQT- 147

Query: 75  SNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            NL   I     D  ++Y                 EAA  L E  + G  + ++ G E  
Sbjct: 148 KNLPRLIDQLKTDGVWVYGAAG-------------EAARDLRELDYRG-KLALVIGAEGE 193

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL        + ++S PV     SLN S A  +++++ +   
Sbjct: 194 GLRRLVREKCDELVSIPVRGRVQSLNASVAASILLYQALAGR 235


>gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 255

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 11/160 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V++L +     N G + R         + +   R    ++    ++A A   +   R
Sbjct: 106 SPLVVVLDEIADPHNFGAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVAR 165

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V +N+ +A+           R +     ++     A V    +       ++ G E  G+
Sbjct: 166 V-ANVAQALQ----------RLKQAGYWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGM 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++S P+     SLN S A  ++++E +   
Sbjct: 215 RRWVREQCDFLVSIPILGRVQSLNASVAAGVLLYEAVRQR 254


>gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
 gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
          Length = 257

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L + Q   N+G + R      +T + + N      + K   S+  +   +  V    +
Sbjct: 112 IVLDNLQDPGNLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVPFV-YVDD 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L   +        TT           A         ++        I+ G E  GL +E 
Sbjct: 171 LLALLDKFQKKKVTT----------YAAHLKGKNTYDKENYQSGTAILIGNEGNGLRDEV 220

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              ++  +  P+     SLN + A  ++++E     
Sbjct: 221 AEKADVWVQIPMQGKVESLNAAIAASILMFEVYRQR 256


>gi|111114873|ref|YP_709491.1| spoU protein [Borrelia afzelii PKo]
 gi|110890147|gb|ABH01315.1| spoU protein [Borrelia afzelii PKo]
          Length = 222

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             + + FG E  GL++E +  ++  I  P+     S NIS AV ++++  +
Sbjct: 131 NKMAVFFGTELTGLSSEVLEAADLCIKIPMYGFTQSYNISVAVAIVMYSLL 181


>gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 262

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 11/153 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        +EK   S+  +   +    ++ +  E   
Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMP---IYYDDDE--- 173

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               I    +  ++ F  ++   E++    +    G+ + +  G E  G++NE + L++ 
Sbjct: 174 -FSLI---KSLKKDGFTLIVTSLESSKDFFKEDLKGKII-LTVGNEGNGVSNEVLDLADR 228

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +  P+     SLN++ A  ++++E +  ++V+
Sbjct: 229 RVKIPMPGGAESLNVAIATSIIIYEKVRQNVVN 261


>gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 262

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 11/153 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        +EK   S+  +   +    ++ +  E   
Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMP---IYYDDDE--- 173

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               I    +  ++ F  ++   E++    +    G+ + +  G E  G++NE + L++ 
Sbjct: 174 -FSLI---KSLKKDGFTLIVTSLESSKDFFKEDLKGKII-LTVGNEGNGVSNEVLDLADR 228

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +  P+     SLN++ A  ++++E +  ++V+
Sbjct: 229 RVKIPMPGGAESLNVAIATSIIIYEKVRQNVVN 261


>gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 290

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF-SNLK----EA 80
           N+G + R+    ++    LV P    P   +A   S      +   R+   ++     + 
Sbjct: 137 NVGAIMRSAAALDV-DAVLVTPSCSDPLYRRAIRVSMGTVFQVPWTRIGGDDVHYWPWQG 195

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           + +LH +  TTA    +  S+        +          + +IFG E  GL+   IA +
Sbjct: 196 LEELHGLGFTTAAMALSDDSISLDDLVWRLHANDNTHIDKLALIFGTEGDGLSRHTIANA 255

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
           +  +  P++    SLN++ +  +  +
Sbjct: 256 DLTVKIPMSHDVDSLNVAASSAVAFY 281


>gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28]
 gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           M5-90]
          Length = 303

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 202 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 250

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294


>gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella
           anatipestifer DSM 15868]
 gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella
           anatipestifer DSM 15868]
          Length = 258

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 26/176 (14%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P++    K P ++IL       N G + R      +  + +        +  A  +SA A
Sbjct: 99  PEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGA 158

Query: 65  DCVIDSVRVFS--NLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
              + +V++    NL   +     + +    AT               E A  L   +  
Sbjct: 159 ---LYNVKICKEKNLAHTVDFLQQSGVSVFSAT---------------EKAEKLIYDVDF 200

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                ++ G E  G++ E +  S+  I  P+     SLN+S A   +++E +   +
Sbjct: 201 KIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILYEVVRQRM 256


>gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
 gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
          Length = 240

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 19/171 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +    +  +++L   +   N+G + R         + +   R+   +      S  A 
Sbjct: 82  ESVPQGKQPLLVMLDGLEDPHNLGAILRTCDCIRADGVIIGKHRNVRLTPTVAKVSTGAI 141

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +  V V +NL +AI  L     ++  T      +F++    +E    +         +
Sbjct: 142 DTV-KVSVVTNLVQAIKYLKKQGYWVVGT------DFENSRDYREGQYDV--------PL 186

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E +G+++      +  +  P+     SLN S A  +++++     
Sbjct: 187 VLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQR 237


>gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           reducens MI-1]
          Length = 243

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 11/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I+L +     N+G + R         + +   R    +     +SA A   +   RV +
Sbjct: 97  IIMLDEINDPHNLGAIMRTADAAGAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARV-T 155

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL + I  L          ++    V+        +         + ++ G E  GL   
Sbjct: 156 NLDQTIRQL----------KDEGLWVVGADMDGSEIYWDAKLTGPLLLVIGGEGKGLGRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++  P+     SLN S A  L+V+E +   
Sbjct: 206 IKERCDMLVRLPMAGRVGSLNASVAAALLVYEVVRQR 242


>gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 325

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 10/162 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +Q      ++ L       N+G V R+   F    + +   R    +  A   SA A  
Sbjct: 167 SVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRSAGVTTAAWKVSAGAAA 226

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
               V   +NL  A+ D           R  F  V         L     +   + ++ G
Sbjct: 227 R-VPVARATNLVRALEDC---------KRAGFFVVGLDGGGDAPLRGLPLADGPLVLVAG 276

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            E  GL+       + I+S P++    SLN + A  + ++E 
Sbjct: 277 AEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALYEV 318


>gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 258

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 22/171 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDS 70
              V++    +   N+G + R+   F    L ++ P+    +PS     SSA A   +  
Sbjct: 100 NSLVVVADKIKDPNNLGAIIRSAEVFGA--LGVIFPKRNSAYPSSAVHKSSAGASMRV-M 156

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +   SNL  AI  L     ++     R         + +               + ++ G
Sbjct: 157 MVSVSNLVSAIKRLQENGMWVVGLDQRADRYLWDEPSIR-------------GKLTLVVG 203

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E  G++       + I S P+     SLN + A  + ++E ME+ +   E
Sbjct: 204 SEEAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMYEWMESVVKGGE 254


>gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074]
          Length = 275

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 15/160 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +    V +L + +   N G V R         + L +      + KA  +S  +   +  
Sbjct: 118 ARPRLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPV 177

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP----KEAAIVLNERIFSGQNVGIIFG 126
                 ++ A+  L          R     +LA     ++      +R   G     IFG
Sbjct: 178 AVGVP-VETAVTGL----------REAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFG 226

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E WGL  E  AL++A++  P++    SLN++ A  + ++
Sbjct: 227 NEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 266


>gi|288962013|ref|YP_003452323.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510]
 gi|288914293|dbj|BAI75779.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510]
          Length = 165

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 17/159 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFS 75
           +L +P + +N G + R      +  L L+ P  G+  +  R   A  D +  +D  R   
Sbjct: 4   VLFEPDIPQNTGTLMRLAAGLGVA-LDLIEP-CGFLLDDRRLRRAGMDYIDHLDWTRH-- 59

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                        A  A  R+    +L  + A    + R   G    I+ GRE  G+ +E
Sbjct: 60  ---------SSWAAYCATPRDGRLVLLTTRAAIPYTDFRFAPGDR--ILVGRESAGVPDE 108

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++A +  P+ P   SLN++ +  +++ E +  +  
Sbjct: 109 VHDAADARLLIPMMPPARSLNVAVSAAMVLGEALRQTAA 147


>gi|262201698|ref|YP_003272906.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262085045|gb|ACY21013.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 154

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 19/161 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I+   P +  N G   R   N    +L L+ P     S+     +      + +V V  
Sbjct: 3   RIMFYQPCIPPNTGNAIRLAANTGC-ELHLIEPLGFSMSDAQVKRAGLDYHEMATVTVHP 61

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL  A   L    ++A TA               A   +  +       ++FG E  GL 
Sbjct: 62  NLVTAWTTLKPERVFAFTA--------------HAERFHTDVDYAPGDVLLFGPEPTGLP 107

Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ +A       +  P+     S N++ A  + V+E     
Sbjct: 108 DDVLAEPEITDRVRIPMLAGRRSHNLANAASIAVYEAWRQQ 148


>gi|120435137|ref|YP_860823.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117577287|emb|CAL65756.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 273

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 14/160 (8%)

Query: 18  ILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ILV   P+   NIG + R      +  + + NP+    +     SS  +  +  +     
Sbjct: 122 ILVAEAPEKPGNIGAILRTADAAAVDAVIIANPKTDLYNPNIIRSSVGS--LFTNKIATG 179

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              E I  L                + A    A      I   +   II G E  GL+NE
Sbjct: 180 TTSEIIQFLQ----------AQKIHIYAAALQASKPYSDINFKEASAIIMGTEATGLSNE 229

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +  S   I  P++    S+N+S A  ++++E     +V 
Sbjct: 230 WLENSTQNIIIPMHGKIDSMNVSVAAGILIFEAKRQRLVE 269


>gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
           19718]
 gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
           19718]
          Length = 277

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 14/163 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L   Q   N+G + R+     +  + L +      S K   +   A   +        
Sbjct: 122 ILLEGIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGMGAHFSLKIHENVDL 181

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           ++ A      + ATT                A  L      G  V  +FG E  G++ E 
Sbjct: 182 IQVARQFAGNVVATT-------------LHDASNLFHTDLRGA-VVFVFGNEGGGISEEL 227

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           +   +  +  P+     SLN++ A  + ++E +     + + +
Sbjct: 228 LETVHQRVMIPMPGCTESLNVATAAAICLFEKVRQDTCAGDSH 270


>gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 279

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 18/148 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAI- 81
             N+G + R         L L++      S +A  +S  A     +   R ++  +E + 
Sbjct: 142 PGNLGTMLRTADAVGAGGLILLDDCADPFSVEAVRASMGAIFTQRLAQAR-WAEFQEWLR 200

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                + A + R+         P   A              ++ G E  GL  E     +
Sbjct: 201 QGEGQLVAASLRDAQ-------PYRGAPYAA-------PCFVMVGNESRGLPEEYEMACD 246

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM 169
             ++ P+     SLN + A  ++ +E +
Sbjct: 247 LRVTMPMKGRADSLNAAVAGAVLAYEVL 274


>gi|194336785|ref|YP_002018579.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309262|gb|ACF43962.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 212

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 70/183 (38%), Gaps = 22/183 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +      +I+ +     N+  + R+     + ++  V+ R    +++  +++A A   
Sbjct: 2   LLHRQPDLTVIMDNVNKAHNLSAIIRSCDGVGIDEIHAVSYRKSIYAKQ--NAAAGASKW 59

Query: 68  IDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           + ++ +  ++  A        +  + AT      +F+++                     
Sbjct: 60  L-TLTLHPDIASAYRKVSACGMQILVATGKEGSRDFRAIDYTV--------------PTA 104

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++ G E  G++ E I  ++  I+ P+  +  SLN+S A  ++++E             ++
Sbjct: 105 LVMGAEWDGISEEAIKGADHAITVPMFGMVESLNVSVATAVILFEAQRQRAEKGMYKRQQ 164

Query: 183 QNT 185
              
Sbjct: 165 LEE 167


>gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9515]
          Length = 349

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 21/165 (12%)

Query: 8   LQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            ++ +  P+ + L       N+G + R+   F+   + +   R    +      +A A  
Sbjct: 196 TKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALE 255

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            I   RV  NL  AI +L      I   +    +    +    + A ++           
Sbjct: 256 HIPVSRVV-NLNRAIDELKKNGFLIVGLSG---DGQIPISKFDQKAPIV----------- 300

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL-MVW 166
           ++ G E  G++       + ++  P+     SLN S A  + + +
Sbjct: 301 VVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCY 345


>gi|119960734|ref|YP_947381.1| 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119947593|gb|ABM06504.1| putative 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
          Length = 303

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 72/190 (37%), Gaps = 25/190 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            + ++    + ++   +   N G V RA        + L        + KA  S+A +  
Sbjct: 123 SVLDAGPRLIAVMCQVRDPGNAGTVLRAADAAGADAVVLTGSSVDIYNPKAVRSTAGSLF 182

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNR-------NNFKSVLAPKEAAIVLNERIFSGQ 119
            +  V + ++++E +A          R R       + + +V   K        R+ +G 
Sbjct: 183 HLP-VVLGADVEELVAQC--------RRRGIGILAADGYGTVNLDKLQDENAARRLGNGS 233

Query: 120 ---------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                        +FG E  GL++ E+AL++  ++ PV     SLN+  A  + ++    
Sbjct: 234 VASDYALESPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNLGTAATVCLYASAR 293

Query: 171 NSIVSSEKNV 180
           +   +   NV
Sbjct: 294 SQQGARVGNV 303


>gi|308810773|ref|XP_003082695.1| CR004 protein (ISS) [Ostreococcus tauri]
 gi|116061164|emb|CAL56552.1| CR004 protein (ISS) [Ostreococcus tauri]
          Length = 308

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 12/139 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  V R+     +    +V+ +    + KA   ++        V  F +   A+    
Sbjct: 79  GNMLAVCRSTEALGIGCAAIVSSKG--LNFKASGRTSGGALKWQRVERFDSTTAALR--- 133

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                 A++R     VL  +                 ++FG E+ G++ E  A+S+  + 
Sbjct: 134 -----AAKSRGMR--VLTTEFEGAYPMSHYDWTIPTAVVFGNEKTGVSEEARAMSDGGVF 186

Query: 146 FPVNPLFPSLNISQAVLLM 164
            P+     SLNIS A  L+
Sbjct: 187 IPMYGFTESLNISVAAALV 205


>gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
          Length = 254

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 20/177 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P+     +G  ++L   Q   N+G + R    F +  + L        S K   +S 
Sbjct: 91  PAEPE--PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASM 148

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QN 120
            A       RV          L     T A  R     V         L E       + 
Sbjct: 149 GAL-----ARVQPT------PLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEP 197

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172
             ++ G E  G++ E  A     ++ P +         SLN++ A  ++  E    S
Sbjct: 198 AILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 254


>gi|88855453|ref|ZP_01130117.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88815360|gb|EAR25218.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 255

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 +FG E  GLT+E  AL++ +IS P+     S+N++ A  + ++E
Sbjct: 198 DHPTAWLFGNEARGLTDEHYALADWVISVPIYGHAESMNLATAASVCLYE 247


>gi|282854676|ref|ZP_06264011.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|282582258|gb|EFB87640.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|314981978|gb|EFT26071.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA3]
 gi|315090889|gb|EFT62865.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA4]
          Length = 277

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R           L+ PR   P   +A  +S      +   R+      L E + 
Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDE-LR 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A  A + ++    L+  E +  L +     + V ++ G E  GL+   I+ ++ 
Sbjct: 189 DHGFTVAAMALSGDS----LSLDEFSADLRQNP---RKVALLMGTEGTGLSAHWISQADV 241

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++  P+     SLN++ A  +  +E  E + VS
Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELREVTRVS 274


>gi|188994636|ref|YP_001928888.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594316|dbj|BAG33291.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 254

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 56/177 (31%), Gaps = 20/177 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P+     +G  ++L   Q   N+G + R    F +  + L        S K   +S 
Sbjct: 91  PAEPE--PVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASM 148

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QN 120
            A       RV          L     T A  R     V         L E       + 
Sbjct: 149 GAL-----ARVQPT------PLKNTVDTLAYFRRQGIPVYGAFLEGQSLYEAPLPNFTEP 197

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-----PLFPSLNISQAVLLMVWECMENS 172
             ++ G E  G++ E  A     ++ P +         SLN++ A  ++  E    S
Sbjct: 198 AILVLGSEGHGISPEVAAEITDRLTIPASGLSVKGHTESLNVAIATAILCSEWRRRS 254


>gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 249

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     ++ + +   R    +     +S  A   +   RV        +
Sbjct: 109 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 167

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           A+ D  + I+ T     +  K                 +     ++ G E  G++   + 
Sbjct: 168 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 212

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +  ++ P+     SLN S A  +++++   + 
Sbjct: 213 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 246


>gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 249

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     ++ + +   R    +     +S  A   +   RV        +
Sbjct: 109 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 167

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           A+ D  + I+ T     +  K                 +     ++ G E  G++   + 
Sbjct: 168 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 212

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +  ++ P+     SLN S A  +++++   + 
Sbjct: 213 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 246


>gi|302380019|ref|ZP_07268498.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312245|gb|EFK94247.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 234

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 26/167 (15%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +  N  +   IIL       N+G + R+M  F    L L++      + KA  +S  A  
Sbjct: 84  EKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKAVRASMGAFF 143

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQN 120
            + +++ F NL++                   K+    K  + +L+E           + 
Sbjct: 144 KL-NIQKFDNLED-----------------YKKNFPNNKIYSFLLDESSNELGDVKFDEP 185

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             + FG E  GL  E    +   I    +    SLN+  A  + ++E
Sbjct: 186 FSLAFGNEGAGLPKE--YYNENKIFINQSKDVDSLNLPIACSIAMYE 230


>gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 320

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L++     ++ L       N+G +AR+   FN   L +   R    +  A  +SA    
Sbjct: 161 ALESDTPALIVALDGVTDPHNLGAIARSAAAFNAHGLLIPERRSAGVNLTAWKTSAGTLA 220

Query: 67  VIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +  +NL  A+        F+    A                  + +   +   + 
Sbjct: 221 RLPVAQ-ATNLTRALEGYKKEGVFVVGLDAGGDTP-------------IPDLELATGPLV 266

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           I+ G E  GL+       + + S P+     SLN S A  + ++E       +  
Sbjct: 267 IVIGSEGKGLSRLVREACDVVASIPIGNA-ESLNASVAAGVSLYEVARRRSAAKG 320


>gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 255

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     ++ + +   R    +     +S  A   +   RV        +
Sbjct: 115 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 173

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           A+ D  + I+ T     +  K                 +     ++ G E  G++   + 
Sbjct: 174 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 218

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +  ++ P+     SLN S A  +++++   + 
Sbjct: 219 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 252


>gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 249

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     ++ + +   R    +     +S  A   +   RV        +
Sbjct: 109 EDPHNLGSILRSADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQT-CQ 167

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           A+ D  + I+ T     +  K                 +     ++ G E  G++   + 
Sbjct: 168 ALKDRGYWIFGTAMEGDDYRKW---------------NANGKTVLVIGNEGKGISPLLLK 212

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +  ++ P+     SLN S A  +++++   + 
Sbjct: 213 QMDQTLTIPMIGHVQSLNASVATGVLLYQAFNSR 246


>gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
           colombiense DSM 12261]
 gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
           colombiense DSM 12261]
          Length = 298

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 14/177 (7%)

Query: 1   MTPYAPQLQNSAKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           M  + P L+ + +GP+  ++L       N+G + R       T +     R   P     
Sbjct: 130 MEDFLPTLK-TKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKRRSALPGGTVV 188

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             SA A   +  + V +           I  T  R +     V+     A          
Sbjct: 189 KVSAGAALRVPMISVTN-----------IAQTITRLQEEGFWVVGLDHNAPQSLWGATYP 237

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               ++ G E  GL+       + ++  P+     SLN   A  L ++E      V 
Sbjct: 238 DKSSLVVGAEGEGLSRLVAQRCDMLLRIPITGKTGSLNAGVAAALGMFEWARAKGVD 294


>gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
 gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
          Length = 244

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 19/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L       ++IL       N+G   R         + +   R    +  A   +  A  +
Sbjct: 90  LVGKENPLLLILDGVTDPHNLGACLRNADAAGAVAVIVPKDRSAQLNATASKVACGAAEI 149

Query: 68  IDSVRVFSNLKE---AIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +  VRV +NL     A+ D   +I  T                 A     +      + I
Sbjct: 150 MPLVRV-TNLARTMRALQDKGVWIVGTAG--------------EATHDIYQSKLTGPLAI 194

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 195 VMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205]
          Length = 238

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 65/188 (34%), Gaps = 20/188 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +      +++       N+  + R        +  +V+        +  +++A     
Sbjct: 22  LNHRMGDLTVVMEQVDKPHNLSAILRTCDAVGALEAHVVS---LPGRPRTFNNTAKGSQK 78

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              +    +++  +  L      IY T     +     +  ++                 
Sbjct: 79  WVPLHPHPSIEGCLQGLKDKGFRIYGT-----HLSVDAVDYRDCDFT--------GPSCF 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           + G E+WG++ E +AL +  +  P+  +  SLN+S A   +++E +     + +     +
Sbjct: 126 LMGAEKWGMSEEALALVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRQRAGKVPSNGE 185

Query: 184 NTPATKGE 191
             P  + E
Sbjct: 186 GIPGGESE 193


>gi|262197612|ref|YP_003268821.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
 gi|262080959|gb|ACY16928.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
          Length = 231

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 17/165 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N   V R++    LT L +  P + +    A   +  ++  I  +R            
Sbjct: 58  PHNGAAVVRSVEAVGLTSLHVAEPIERFQFSPAV--AIGSEKWIRVLR------------ 103

Query: 85  HFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           H  +   AR  R     + A    A +  + I   Q   ++FG E  GL+   I   +A 
Sbjct: 104 HQGFTACARILRGAGFRMYAACPDAEMSMDDIDVSQPSAVVFGNEHEGLSRRAIDACDAK 163

Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC--MENSIVSSEKNVKEQNTP 186
           ++ P++    SLN+S +V + +++      +++    ++++Q   
Sbjct: 164 VAIPMHGFTQSLNLSVSVAVSIFQLAARRRALLGRLGDLEDQERA 208


>gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
          Length = 249

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    ++    +S  A   I  VRV +  
Sbjct: 100 ILDEIEDPHNLGSIMRTADAAGAHGIIIPKRRAVGLTQTVAKASTGAIEYIPVVRVTNIA 159

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + +      +   T A+   +++              +      +G++ G E  G++ 
Sbjct: 160 RTMDDLKKRGLWFAGTDAKGSADYR--------------QASFDMPIGLVIGSEGKGISR 205

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + +I  P+     SLN S A  L+++E     
Sbjct: 206 LIKEKCDFLIQIPMVGQVTSLNASVAASLLMYEVYRRR 243


>gi|283783144|ref|YP_003373898.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
 gi|283441076|gb|ADB13542.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
          Length = 302

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA 82
             N G + R         +  V+      + K   S+A +   +  V+  V    + A  
Sbjct: 152 PGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLSVQDWFECAAK 211

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               I A      +  K V  PK    +L        ++ I+FG E  GL  E +   + 
Sbjct: 212 SNIRIIAADIYGTDKIKPVPFPK----ILVNSEVISSSLAILFGNEARGLPKEVLQQVDD 267

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
           I   P+     S+N++ +  +M+
Sbjct: 268 ISIIPIYGKAESMNLATSAAVML 290


>gi|315226503|ref|ZP_07868291.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|315120635|gb|EFT83767.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 324

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEA----- 80
           N+G + R+    ++    LV P    P   +A   S      +   R+  +   A     
Sbjct: 159 NVGAIMRSAAALDV-DAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGDDSHAWPHPG 217

Query: 81  IADLHFIYATTA---------RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           I  LH +  TT             +  + +  P  AA    ++      V +IFG E  G
Sbjct: 218 IDLLHRLGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVD--KVALIFGTEGDG 275

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           L+ + +A ++  +  P++    SLN++ +  +  +
Sbjct: 276 LSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAFY 310


>gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
 gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
 gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
          Length = 312

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 10  NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--- 65
           ++ + P+I+L+       N+G V R++  F    + +   R    +  A  SSA A    
Sbjct: 158 DAGQDPLIVLLDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGAAART 217

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V  +  +   L+    +   +    A             +    + +       V I+ 
Sbjct: 218 PVARATNLTRTLEAYKKEGVVVVGLAA-------------DGEADVTDLPALEGPVAIVV 264

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 265 GSEGKGLSRLVGETCDIRVRIPMPGGAESLNAGVAAGIVLYEAARRR 311


>gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191]
 gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191]
          Length = 249

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 17/151 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82
            +N+G + R+      + + L + R    +      ++ A    + V V    NL  A+ 
Sbjct: 110 PQNLGSIIRSAACLGFSTIILPSRRTVGLTPSVYKVASGAT---EKVTVVEVANLATALL 166

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL             F    A  +       +        ++ G E  G+  +     + 
Sbjct: 167 DL---------KDEGFWIYGA--DMGGQSIVKTDYSFPAVLVVGSEGTGIREKTAEHCDQ 215

Query: 143 IISFPVNP-LFPSLNISQAVLLMVWECMENS 172
           ++S P  P    SLN + A  +++++    +
Sbjct: 216 VVSIPQAPGSVDSLNAANAASIIMFDMFAKA 246


>gi|57505789|ref|ZP_00371714.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
           upsaliensis RM3195]
 gi|57015819|gb|EAL52608.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
           upsaliensis RM3195]
          Length = 229

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       N+G + R  +   +  L  +        E    SS+ A   +       
Sbjct: 85  IVMLCGISDVGNMGAIIRTAYALGVDGLLFIG--KNLAQESIVRSSSGAALDLPICLSND 142

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+ +L          +     +         ++   F      +I G E +GL+++
Sbjct: 143 AL-SALNEL----------KQMEFKLYGADGKGREVHHLTFPKGKKVLIMGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            I   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IIQKCDECVGIAMQNDFDSLNVSAAFAILC 221


>gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 262

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 13/156 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L + Q   N+G + R      +T + +        + K   S+  +   +  V    +L
Sbjct: 115 VLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFV-YVEDL 173

Query: 78  KEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           KEAIA +      T A + +   S            ++    +    + G E  GL  E 
Sbjct: 174 KEAIAKVKAHGIFTYAAHLDGKNSY-----------DKEDYTKKTAFLIGNEGNGLRKEI 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             L++  I  P+     SLN + A  ++++E     
Sbjct: 223 ADLADTWIRIPMQGQVESLNAAIATSVLMFETARQR 258


>gi|314923774|gb|EFS87605.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL001PA1]
 gi|314966212|gb|EFT10311.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA2]
 gi|315095102|gb|EFT67078.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL060PA1]
 gi|315104331|gb|EFT76307.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA2]
 gi|327328119|gb|EGE69888.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL103PA1]
          Length = 277

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R           L+ PR   P   +A  +S      +   R+      L E + 
Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDE-LR 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A  A + ++    L+  E +  L +     + V ++ G E  GL+   I+ ++ 
Sbjct: 189 DHGFTVAAMALSGDS----LSLDEFSADLRQNP---RKVALLMGTEGTGLSAHWISQADV 241

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++  P+     SLN++ A  +  +E  E + VS
Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELREVTRVS 274


>gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
           Cudo]
 gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
           Cudo]
          Length = 303

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 202 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 250

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294


>gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0855]
 gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0855]
          Length = 285

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   I   RV   L
Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARVTK-L 198

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++IA L     +I+ T     +  +                 +   + +I G E  G++
Sbjct: 199 AQSIATLKENQFWIFGTDMSGTDYRRW---------------NTQGAIALIIGNEGRGMS 243

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN   A  L+++E     
Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282


>gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 23/184 (12%)

Query: 1   MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +    P L    KGP+ + L +    +N+G + R+ + F ++ + L        S     
Sbjct: 387 IKELDPVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSK 446

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL----APKEAAIVLNERI 115
           +SA +  +++ +R   N+ + +        T+  +  N   VL    +P+  AI LNE I
Sbjct: 447 ASAGSLELME-LRFCKNMMQFL--------TS--SAENGWQVLGGSVSPR--AIPLNE-I 492

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN-PLF---PSLNISQAVLLMVWECMEN 171
             G    ++ G E  GL          +I  P N P F    SLN+S A  +++   + N
Sbjct: 493 SPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPSFLAVESLNVSVAAGVLLHHLVGN 552

Query: 172 SIVS 175
           S  +
Sbjct: 553 SYEN 556


>gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
 gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
          Length = 250

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 24/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70
           I+L + +   N+G + R         + +   R    +     +SA A        V + 
Sbjct: 105 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 164

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +    LKE    L F+ A                +       R+     +G++ G E  
Sbjct: 165 AKTMEELKE--KGLWFVCA----------------DMGGESMYRLNLTGPIGMVIGNEGD 206

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G++       + I S P+     SLN S A  ++ +E +   +
Sbjct: 207 GVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQRL 249


>gi|254245541|ref|ZP_04938862.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
           PC184]
 gi|124870317|gb|EAY62033.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
           PC184]
          Length = 106

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 19/117 (16%)

Query: 60  SSANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            ++ A   +  + V +NL  A+ +L     +I  T+              EA   L E  
Sbjct: 1   MASGAADTVPYITV-TNLARALRELKEAGVWIIGTS-------------DEAPATLYETK 46

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G  V ++ G E  G+        + ++S P+     SLN+S A  + ++E +   
Sbjct: 47  LDG-PVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 102


>gi|325106948|ref|YP_004268016.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
 gi|324967216|gb|ADY57994.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
          Length = 168

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 32/183 (17%)

Query: 1   MTP----YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK 56
           MTP      P   + A    ++L  P++ +N G + R+       +L L+ P       +
Sbjct: 1   MTPDEDHSPPAGDSHAPLLNVVLYQPEIPQNTGNIGRSCVAIG-AKLWLIRPLGFQLDSR 59

Query: 57  ARSSSANADCVIDSV--RVFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLN 112
               +       + +      +  E    L    ++  T     +   V           
Sbjct: 60  YLKRA--GLDYWEHLDWEAVDSWDEVKRRLPNSNVFCLTKFGSKHPWDV----------- 106

Query: 113 ERIFSGQNVGIIFGRERWGLT----NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                G    ++FG E  GL      E        +  P+     SLN++     +++E 
Sbjct: 107 -SFAPGDI--LLFGSESSGLPVSIRGEYAGQC---VRLPMRTQVRSLNLASTANAIMYEA 160

Query: 169 MEN 171
           +  
Sbjct: 161 VRQ 163


>gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E980]
 gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E980]
          Length = 286

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARV-TNL 199

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T               +      ++  +  ++ ++ G E  G++
Sbjct: 200 VQAVQQLKEIGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|258654263|ref|YP_003203419.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258557488|gb|ACV80430.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 271

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 53/167 (31%), Gaps = 10/167 (5%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           MT  A  L   +   V +LV      N G V R           +V      P + KA  
Sbjct: 104 MTSVA-DLLAGSPKLVAVLVQTSDPGNTGTVIRLADAAG-ADGVIVAGEAADPWNAKAIR 161

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +SA +   +    V      A      I   TA   +   S                   
Sbjct: 162 ASAGSVFHLP---VVP----ARDPAALIGELTAAGLSVLASTGQADVELGSAQAEGILDL 214

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +FG E  GL  E I  ++  I  P+     SLN++ A  + ++
Sbjct: 215 PTAWLFGSEAHGLPAEIIGRADERIRIPIYGRAESLNLAAAAAVCLY 261


>gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
           TX1330]
 gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           PC4.1]
 gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
           TX1330]
 gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           PC4.1]
          Length = 286

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARV-TNL 199

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T               +      ++  +  ++ ++ G E  G++
Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 264

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 19/164 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANA 64
            Q+  +A   V++L + +   N G V R    F      LV +      S K   S+  +
Sbjct: 106 EQVLATAPRLVVLLSNVRDPGNAGTVIRGADAFG-ADAVLVTDGSVDVLSPKVVRSTVGS 164

Query: 65  DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  V    V   L    A     YA           V                 Q  
Sbjct: 165 LFHLPVVTGLDVNETLDALAAHGIRTYAADGVGTTLLPDVDV--------------SQPH 210

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
             + G E WGL  E     N ++  P++    SLN++ A  + +
Sbjct: 211 AWVMGNEAWGLPAEIRDRCNDVVRVPIHERVESLNLAMAATICL 254


>gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046]
          Length = 287

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 17/161 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL + +   N+G + R         + +   R    +     +S  A   +  VRV +  
Sbjct: 139 ILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTAVVAKASTGAIEHVPVVRVTNLA 198

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+   +++ +               +   + +I G E  G++ 
Sbjct: 199 QTVDELKDRGVWIAGTDAKGSADYRKM--------------DATLPLALIIGSEGKGMSR 244

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                 + +   P+     SLN S A  L+++E       +
Sbjct: 245 LLKDKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEA 285


>gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22]
          Length = 242

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 33/166 (19%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVF 74
           ++IL      +NIG + R+   F +  + L  P+D  P+E  + + +A     +  +   
Sbjct: 97  IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKV 154

Query: 75  SNLKEAIADLHF----------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +NL        +          I   T   +  F              +++ S   + ++
Sbjct: 155 TNL------CSYMNYLKKRGFWIIGVTGYAKEYF-------------TDKLISD-KIALV 194

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           FG E  G+        + +   P++    SLN++ A  ++     +
Sbjct: 195 FGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHK 240


>gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 328

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 33/175 (18%)

Query: 13  KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             P+ + L       N+G + R++  F           DG    + RS++  A       
Sbjct: 174 TPPLFVALDGITDPRNLGAIIRSVSAF---------SGDGVIIPERRSAAVTAGAW---- 220

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-----------VLNERIFSGQN 120
                   A A +    AT     N  + +   KE  I            L     + + 
Sbjct: 221 ---KTSAGAAARIPVAMAT-----NLTRVIQQAKEQGIFVIGLDGGGDIELPALELANEP 272

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  GL+       + I+S P++    SLN + AV + +++       +
Sbjct: 273 LCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRASA 327


>gi|148241671|ref|YP_001226828.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
 gi|147849981|emb|CAK27475.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
          Length = 229

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 21/172 (12%)

Query: 18  ILVDP-QLGENIGMVARAMWNFNLTQLRLVN----PRDGWPSEKARSSSANADCVIDSVR 72
           +L++  +   N+  + R      + +   V+    PR         S++  +   +  +R
Sbjct: 24  VLMEAVEKPHNLSAILRTCDATGVFEAHAVSLKGRPRTF------NSTAQGSQKWVP-IR 76

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++K+A A+L             F+          V        +    + G E+WGL
Sbjct: 77  DHDSVKDAFAEL---------RAKGFRIYGTMLGVNAVDYRSCDFTKPSAFVLGAEKWGL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           T E     +  +  P++ +  SLN+S A   +++E +     +     + + 
Sbjct: 128 TAEAGDAVDQPVFIPMSGMVQSLNVSVAAATLLFEAVRQRQAAGLIPTQGEG 179


>gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E]
 gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii]
          Length = 248

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 33/166 (19%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVF 74
           ++IL      +NIG + R+   F +  + L  P+D  P+E  + + +A     +  +   
Sbjct: 103 IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKV 160

Query: 75  SNLKEAIADLHF----------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +NL        +          I   T   +  F              +++ S   + ++
Sbjct: 161 TNL------CSYMNYLKKRGFWIIGVTGYAKEYF-------------TDKLISD-KIALV 200

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           FG E  G+        + +   P++    SLN++ A  ++     +
Sbjct: 201 FGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHK 246


>gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 253

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 21/172 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68
           +A+  +++L       N+G   R           ++ P+D      A  +  ++ A   +
Sbjct: 98  TAQPLLLVLDGVTDPHNLGACLRVAD--GAGAQAVIAPKDHAAGINATVAKVASGAAETV 155

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
               V +    L E      +   T+              + A      +     V +I 
Sbjct: 156 PYFMVTNLARTLNELKERNIWCIGTS--------------DDAEKTIYDVDLTGPVALIL 201

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E  G+        + ++S P+     SLN+S A  + ++E +     ++ 
Sbjct: 202 GAEGEGMRQLTRKTCDELVSIPMQGAVESLNVSVASGVCLYEALRQRRPAAA 253


>gi|237744635|ref|ZP_04575116.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229431864|gb|EEO42076.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 258

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----D 65
           S    ++IL D     N+G + R     N   + L        +EK   ++  +      
Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKRTVDAYNEKVIRATMGSILNVNL 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++  ++ + LKE                NN+  +    +   +   +I   +   I+F
Sbjct: 165 YYLEKSKIINFLKE----------------NNYSIISTYLDKTAIPYNKIELKEKNAIVF 208

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++++ I +++     P+     SLN++ A  +++++  E
Sbjct: 209 GNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253


>gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
           DSM 20603]
 gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
           DSM 20603]
          Length = 326

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 16/155 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKEAI 81
             N+G + RA   F    + +   R    +  A   SA A   +   RV     +L+   
Sbjct: 183 PRNLGAILRAGGAFGAHGVIVPERRAAGMTASAWKVSAGAAARVPVARVTNLVRSLEALK 242

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               F+      + +   SV              F+   + ++ G E  GL+       +
Sbjct: 243 KSGCFVVGL---DGDADSSVRD----------LPFAADPLVLVVGSEGKGLSRLVRETCD 289

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           AI + P++    SLN + A  + ++E        +
Sbjct: 290 AIAAIPISTTVESLNAAVAAGITLYEVAAARSEDA 324


>gi|269956119|ref|YP_003325908.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304800|gb|ACZ30350.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 301

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 57/164 (34%), Gaps = 12/164 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L   +   N G V RA        + L        + K   S+A +   +  V V S  
Sbjct: 140 VLATVRDPGNAGTVIRAADAAGADLVVLAGDSVDVHNPKVVRSTAGS---LFHVPVVSGV 196

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRE 128
              ++ +A+ +             +    L          ER         +   +FG E
Sbjct: 197 PLADVVDAVHERGLTVLAADGAGPHDLDDLLDVAGPSHAGERGAGTPDLAASTAWVFGNE 256

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            WGL  ++  L++A++  P+     SLN++ A  + ++      
Sbjct: 257 AWGLPEKDRELADAVVRVPIRGRAESLNLATAATVCLYASSRAQ 300


>gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
          Length = 246

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 17/161 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R      +  + +   R    +      +  A   +  VRV +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLA 159

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             ++       +   T                 A     +      + ++ G E  G+  
Sbjct: 160 RTMRALQEQGVWFVGTAG--------------EATHDIYQAKLTGPLAVVMGAEGDGMRR 205

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                 + +I  P++    SLN+S A  + ++E +   +  
Sbjct: 206 LTRETCDDLIKIPMSGSVSSLNVSVASGICLFEAVRQRLAQ 246


>gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
 gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
          Length = 286

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277


>gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
           DSM 43247]
 gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
           DSM 43247]
          Length = 316

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 31/166 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L +     N+G V R++  F    + +   R    +  A  +SA A   +   +    
Sbjct: 169 VALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVAQ---- 224

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----------QNVGIIFG 126
                       AT     N  +++    E+   L      G              I+ G
Sbjct: 225 ------------AT-----NLTRTLKDWAESGAQLVGLDADGDVTLDDYDGTGPTVIVVG 267

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GL+       ++I+S P+     SLN S A  +++ E     
Sbjct: 268 SEGKGLSRLVRESCDSILSIPMAGDVESLNASVAAGVVLAEFARQR 313


>gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
 gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6
           str. 870]
 gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4
           str. 292]
 gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9
           str. C68]
 gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
           str. 9-941]
 gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
 gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
          Length = 286

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277


>gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
           curdlanolyticus YK9]
 gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
           curdlanolyticus YK9]
          Length = 281

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 11/154 (7%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L + +   N+G + R      +  + +   R    +      SA A   +   RV +NL 
Sbjct: 136 LDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAGAAEYVPVARV-TNLA 194

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           + I             +     +     AA     R      +G++ G E  G+      
Sbjct: 195 QTIE----------TLKEQGVWIAGADVAAEQDVYRTKFDMPLGLVIGNESKGMGRLIRE 244

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + +I  P+     SLN S A  ++++E +   
Sbjct: 245 KCDFLIKLPMAGQLNSLNASVAAGVLMYEVLRQR 278


>gi|332521021|ref|ZP_08397481.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043551|gb|EGI79747.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 266

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 19/171 (11%)

Query: 6   PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             L  + K P+I LV   P+   NIG + R     N+  + + NP+    +     SS  
Sbjct: 108 ENLSFNTKNPLI-LVAEAPEKPGNIGAILRTADAANIDAVIIANPKTDLYNPNIIRSSVG 166

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNV 121
               + + ++ +   EAI  ++F+         N K +           E          
Sbjct: 167 C---LFTNQIATGSTEAI--INFL---------NSKGINIYAAILQESQEYHKQDFTTPT 212

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I+ G E  GL+N     +   I  P+     S+N+S A  ++++E     
Sbjct: 213 AIVVGTEATGLSNYWRNAAKKNIKIPMQGAIDSMNVSVAAGILIFEAKRQR 263


>gi|260494497|ref|ZP_05814627.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197659|gb|EEW95176.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 258

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 21/165 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----D 65
           S    ++IL D     N+G + R     N   + L        +EK   ++  +      
Sbjct: 105 SLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNL 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++   + + LKE                NN+  +    +   +   +I   +   I+F
Sbjct: 165 YYLEKSEIINFLKE----------------NNYSIISTYLDKTAIPYNKIELKEKNAIVF 208

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++++ I +++     P+     SLN++ A  +++++  E
Sbjct: 209 GNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253


>gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
          Length = 285

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 140 ILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKASTGAVEHIPVARV-TNL 198

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            ++IA L     +I+ T   +  +++S                    + +I G E  G++
Sbjct: 199 AQSIATLKENQFWIFGTDM-SGTDYRSWNT--------------QGAIALIIGNEGRGMS 243

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN   A  L+++E     
Sbjct: 244 QGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYRGR 282


>gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
 gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
          Length = 244

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 19/159 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       N+G   R         + +   R    +  A   +  A  ++  VRV +NL
Sbjct: 100 ILDGVTDPHNLGACLRNADAAGAVAVIVPKDRSAQLNATASKVACGAAEIMPLVRV-TNL 158

Query: 78  KE---AIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                A+ D   +I  T                 A     +      + I+ G E  G+ 
Sbjct: 159 ARTMRALQDKGVWIVGTAG--------------EATHDIYQSKLTGPLAIVMGAEGEGMR 204

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +I  P+     SLN+S A  + ++E +   
Sbjct: 205 RLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|295426405|ref|ZP_06819055.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
 gi|295063773|gb|EFG54731.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
          Length = 186

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 18/180 (10%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V + 
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVEIH 59

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +L+  +         T    +    +           +     +N   +FG+E  GL
Sbjct: 60  MHDDLEAFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
               +    +  +  P++      N++ +V +++ E +      + +          K +
Sbjct: 112 PETFMREYYDRNLRIPMSNNIRCYNLANSVAMVLLEALRQQGFPNMETSHHYENDKLKDD 171


>gi|221199483|ref|ZP_03572527.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M]
 gi|221180768|gb|EEE13171.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M]
          Length = 171

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 47/164 (28%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NA------- 64
            I L  P+  +NIG V RA          LV       S +    ++     A       
Sbjct: 30  AIGLHQPKDPKNIGGVLRAA---GCYDAALV-----VLSGRRYQRASTDTQKAFRHLPVI 81

Query: 65  --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             D V+ S      +  A+      + TTA    +FK                   ++  
Sbjct: 82  QTDDVL-SAIPVGAVPIAVE-----FTTTATPLTDFKHP-----------------ESAF 118

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            IFG E   + N+ +A    ++  P    +  +N++ AV ++++
Sbjct: 119 YIFGPEDGSVPNQIVAKCRDVVYVPT--AYC-MNLAAAVNVLLY 159


>gi|31544702|ref|NP_853280.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541548|gb|AAP56848.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930766|gb|ADC30705.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(high)]
 gi|284931329|gb|ADC31267.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           F]
          Length = 279

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F+LT+  L++      + K   +SA A    + + +  NL + + 
Sbjct: 132 QDPSNLGTILRNAAAFDLTK-VLIHDSVNLYNPKLIRASAGA-IFSNQISLIKNLDQFLN 189

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     + +       A  E A  L++      N+ IIFG E  G++ + +  ++ 
Sbjct: 190 --------AIKKKGLRLVATANHEDATPLDQFDHQLGNI-IIFGNEANGVSEQLLNQADQ 240

Query: 143 IISFPVNPLFP-SLNISQAVLLMVWECMENS 172
            I   +N  +  SLN++ +  ++++E  +  
Sbjct: 241 TIKIVINNQYAESLNVATSSGIILYELNKLW 271


>gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 242

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + ++ G E 
Sbjct: 154 VTNLSQTLGKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALVIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|313665262|ref|YP_004047133.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma leachii
           PG50]
 gi|312949880|gb|ADR24476.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           leachii PG50]
          Length = 181

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 17/166 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + +   I+L  P++ +N+G + R     N  +L ++ P      ++  S S+  +     
Sbjct: 2   NKRKINIVLYQPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRSSANEYKYVD 60

Query: 71  VRVFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              + +  + I    ++         +R   K +           +      NV ++FG+
Sbjct: 61  CIRYDDWNDFITKHKNITLFCL----SRYGQKPISD--------FDFSKINDNVYLVFGK 108

Query: 128 ERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+    +    N     P+     SLNI+  V +  +E +   
Sbjct: 109 ESTGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154


>gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           frigidimarina NCIMB 400]
          Length = 246

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 27/164 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVI------D 69
           IL       N+G   R      +    +V P+D     +      +  A   I      +
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVHA-VIV-PKDNSVGLTSTVSKVACGAAETIPLFQVTN 158

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R   +L++      +I  T      N                +      + I  G E 
Sbjct: 159 LARTMRHLQDK---GVWIVGTAGEAEGN--------------VYQADLKGPLAIAMGAED 201

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            GL        ++++S P++    SLN+S A  + ++E +   +
Sbjct: 202 KGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLFEAVRQRL 245


>gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
 gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
          Length = 267

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 18/163 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VID 69
            G VI+L   Q   N+G + R         + L        + K   S+  +     V++
Sbjct: 113 NGLVIVLDGLQDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLPVLE 172

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              + S L EA            R R   + V    E      E  F G    I+ G E 
Sbjct: 173 G-ELLSILPEA------------RERGA-RLVTTMLEGKRSCFEYDFRG-TSWIVIGSEG 217

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G++ E  A+ +  I  P+     SLN + A  ++++E +   
Sbjct: 218 RGVSPEVAAIVDDAIRIPMPGQAESLNAAMAASVLMYEALRQR 260


>gi|294786867|ref|ZP_06752121.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|294485700|gb|EFG33334.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
          Length = 302

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEA----- 80
           N+G + R+    ++    LV P    P   +A   S      +   R+  +   A     
Sbjct: 137 NVGAIMRSAAALDV-DAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGDDSHAWPHPG 195

Query: 81  IADLHFIYATTA---------RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           I  LH +  TT             +  + +  P  AA    ++      V +IFG E  G
Sbjct: 196 IDLLHRLGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVD--KVALIFGTEGDG 253

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           L+ + +A ++  +  P++    SLN++ +  +  +
Sbjct: 254 LSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAFY 288


>gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
 gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
          Length = 233

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 23/148 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA 82
             N+G + R +       + +        +      +  A   ++ V+VF  SNL + I 
Sbjct: 97  PHNLGAILRTVEACGFDGVIMSKKHQVPLNATVSKIACGA---LEYVKVFLVSNLHQTIL 153

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      I  T                 A     +I   Q++ II G E  G+      
Sbjct: 154 KLQKQQVLIIGT--------------DSNATQTLTKIPCNQSLAIIVGNEGDGIRYLLKQ 199

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
             + ++  P+     SLN+S A  LM++
Sbjct: 200 KCDLLVKIPMKGKINSLNVSVASALMMY 227


>gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445]
 gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC
           23445]
          Length = 286

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277


>gi|83319378|ref|YP_424348.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283264|gb|ABC01196.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 181

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 15/165 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + +   I+L  P++ +N+G + R     N  +L ++ P      ++  S S+  +     
Sbjct: 2   NKRKINIVLYQPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRSSANEYKYVD 60

Query: 71  VRVFSNLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              + +  + I       ++  +   R   K +           +      NV ++FG+E
Sbjct: 61  CIRYDDWNDFITKHQNITLFCLS---RYGQKPISD--------FDFSKINDNVYLVFGKE 109

Query: 129 RWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+    +    N     P+     SLNI+  V +  +E +   
Sbjct: 110 STGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154


>gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
           105476]
 gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           tribocorum CIP 105476]
          Length = 284

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             + ++ G E+ GL++      + +   P +    SLN++ A  +M++E     +    
Sbjct: 219 GPIILLMGNEKQGLSDILTNRCDKLARIPQSGRADSLNLAIATAVMLYEIRRPYLTLEP 277


>gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
           15470]
 gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
           15470]
          Length = 282

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R         + L   R    +  A  +++ A   +   ++  N+++ +  L  
Sbjct: 148 NIGAIVRTAECAGAAAVLLPKHRSSPVTAAAMKTASGAFAYLPVCQI-GNIRQTLEKL-- 204

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                      F +V         L +    G  V I+ G E  G++     + +  +  
Sbjct: 205 -------KERGFWAV-GADMDGGDLYQADLKGPLV-IVMGAEGKGISPLTKRMCDFCVRI 255

Query: 147 PVNPLFPSLNISQAVLLMVWECMENS 172
           P+     SLN+S A  L+++E +   
Sbjct: 256 PMRGKVSSLNVSVAAALLMYEAVRQR 281


>gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 286

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAAS 184

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277


>gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
           ATCC 25296]
 gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
           ATCC 25296]
          Length = 328

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 33/175 (18%)

Query: 13  KGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             P+ + L       N+G + R++  F           DG    + RS++  A       
Sbjct: 174 TPPLFVALDGITDPRNLGAIIRSVSAF---------SGDGVIIPERRSAAVTAGAW---- 220

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI-----------VLNERIFSGQN 120
                   A A +    AT     N  + +   KE  I            L     + + 
Sbjct: 221 ---KTSAGAAARIPVAMAT-----NLTRVIQQAKEQGIFVIGLDGGGDIELPALELANEP 272

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + ++ G E  GL+       + I+S P++    SLN + AV + +++       +
Sbjct: 273 LCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRASA 327


>gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis
           MA-4680]
          Length = 313

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 53/169 (31%), Gaps = 30/169 (17%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC------- 66
             V+ L       N+G V R++  F      +V      P  +A   +A A         
Sbjct: 164 PLVVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKTSAGTAA 216

Query: 67  ---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              V  +  +   L+    +   +   TA             +  + L +       V I
Sbjct: 217 RTPVARATNLTRTLESYKKEGLVVVGLTA-------------DGEVELGDLEALAGPVVI 263

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 264 VVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEAARRR 312


>gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 265

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 16/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--A 82
             N+G + R         L L++      S ++  +S  A           ++ +A    
Sbjct: 127 PGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGA-------LFTQSITQARWGE 179

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +H++       R     ++     A    +         ++ G E  GL     A  + 
Sbjct: 180 FMHWL-------REGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDL 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  P+     SLN + A  +M +E +  
Sbjct: 233 LVKMPMLGKADSLNAAVACAVMAYELLNQ 261


>gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 256

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 28/162 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV----FSNLK 78
           +   N+G + R       + +   + R+  P+     +SA A     ++RV      N+ 
Sbjct: 114 EDPHNLGAMIRTAEAAGFSAVLFPSRREALPTGVVVKASAGA-----ALRVPLIMVGNVS 168

Query: 79  EAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +AI  +      +     A+ R            A V +ER+     + ++ G E  GL+
Sbjct: 169 QAIRRVKEDLGLWAVGLEAQGR------------ASVFDERLPP--RIALVVGSEGKGLS 214

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               A  + I+  P+     SLN+S A  +++++  + +++ 
Sbjct: 215 RVASAACDDILMIPMMGASGSLNVSVAAGIVMYQWYQGNLIG 256


>gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
          Length = 251

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 19/168 (11%)

Query: 10  NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
            S + P+I IL       N G + R      +  + +   R    +     +S  A   +
Sbjct: 99  ESEENPLIMILDGITDPHNFGSILRTADATKVCGIIIPKHRAVGVTPVVSKTSTGAVEHL 158

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV +    L +      +I+ T                    + +   SG  + +I 
Sbjct: 159 PIARVTNLSQTLDKLKEAGFWIFGT--------------DMDGTPVQKWNTSG-KLALII 203

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G+++      + +I+ P++    SLN S A  ++++E   N +
Sbjct: 204 GSEGKGISHNIKKQVDEMITIPMDGHVQSLNASVAAAVLMYEVFRNKL 251


>gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 247

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+I IL       N G + R      +T + +   R    +     +S  A   I   
Sbjct: 98  ENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIA 157

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV +    L +      +++ T                     ++   +G  + +I G E
Sbjct: 158 RVTNLSQTLDKLKESGFWVFGT--------------DMDGTPSHKWNTAG-KLALIIGNE 202

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++       + +I+ P++    SLN S A  ++++E   N +
Sbjct: 203 GKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNRL 247


>gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
 gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
          Length = 243

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTTG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G+++      + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRV 242


>gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
           Rustic]
 gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
           Rustic]
          Length = 240

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 21/149 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+   F++  + L  P+D  P+E  + + +A     +  +   +NL+  +  L 
Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLK 165

Query: 86  ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +I   T    + F              +++ S + V ++FG E  G+        +
Sbjct: 166 KHRFWIIGLTGSANDYF-------------TDKLISDKTV-LVFGSEDKGIRRLVAETCD 211

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            +   P++    SLN+S A  ++     +
Sbjct: 212 YLAKIPISQRVESLNVSNAASILFHSLHK 240


>gi|224533032|ref|ZP_03673638.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23]
 gi|224512026|gb|EEF82421.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23]
          Length = 118

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     + I FG E  GL+ E +  ++  +  P++    S NIS AV ++++  +  
Sbjct: 21  ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMR 79


>gi|225549196|ref|ZP_03770169.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
 gi|225370054|gb|EEG99494.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
          Length = 218

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     + I FG E  GL+ E +  ++  +  P++    S NIS AV ++++  +  
Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMR 179


>gi|216264824|ref|ZP_03436816.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
 gi|223889195|ref|ZP_03623784.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
 gi|215981297|gb|EEC22104.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
 gi|223885444|gb|EEF56545.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
 gi|312148144|gb|ADQ30803.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi JD1]
          Length = 218

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     + I FG E  GL+ E +  ++  +  P++    S NIS AV ++++  +  
Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFTQSYNISVAVAIVMYSLLMR 179


>gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 273

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 22/155 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           +   N+G + R+     +    + N      +     +S  A   +      +  +EA  
Sbjct: 128 EKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPNVIRASTGALFSVPLAEAEN--QEAYD 185

Query: 82  ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                ++  + AT                    +   +   Q V I+ G E+ GLT   +
Sbjct: 186 WLKKNNIRTLAAT---------------PHTDQIYTDVDMTQAVAIVVGTEQTGLTELWM 230

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             S+  +  P+     SLN++ A  ++++E     
Sbjct: 231 EHSDLPVRIPMLGKIDSLNVATATTILLYEAARQR 265


>gi|222084674|ref|YP_002543203.1| rRNA methylase protein [Agrobacterium radiobacter K84]
 gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84]
          Length = 286

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +    V + 
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATMGSVFAVP--VVKAT 192

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E +A      +  + AT      +++++                 + V ++ G E+ G
Sbjct: 193 PEEFLAWKKTAGVS-VVATHLAGAVDYRTIDY-------------KKKPVVLLMGNEQSG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           L +     ++A+   P      SLN++ A  +M++E   + +  SE 
Sbjct: 239 LPDALAKEADALARIPQAGRADSLNLAVATAVMLFEARRHLLTLSET 285


>gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205]
 gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola
           CNS-205]
          Length = 372

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 18/169 (10%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A   ++ L       N+G V R+   F    + L   R    +  A  +SA A   +   
Sbjct: 218 AAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVA 277

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +V +NL  A+         +    A    +   +               S   + ++ G 
Sbjct: 278 QV-TNLTRALKACKDAGFVVVGLDADGETDLYHL-------------EASVGPLVVVVGS 323

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E  GL+       +  +  P+     SLN S A  + + E         
Sbjct: 324 EGRGLSRLVGETCDLTVQIPMVSDVESLNASVAAAVTLAEVARRRAAEG 372


>gi|221205615|ref|ZP_03578630.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2]
 gi|221174453|gb|EEE06885.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2]
          Length = 172

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 47/164 (28%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NA------- 64
            I L  P+  +NIG V RA          LV       S +    ++     A       
Sbjct: 31  AIGLHQPKDPKNIGGVLRAA---GCYDAALV-----VLSGRRYQRASTDTQKAFRHLPVI 82

Query: 65  --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             D V+ S      +  A+      + TTA    +FK                   ++  
Sbjct: 83  QTDDVL-SAIPVGAVPIAVE-----FTTTATPLTDFKHP-----------------ESAF 119

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            IFG E   + N+ +A    ++  P    +  +N++ AV ++++
Sbjct: 120 YIFGPEDGSVPNQIVAKCRDVVYVPT--AYC-MNLAAAVNVLLY 160


>gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 318

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 31/178 (17%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A  L  S+   ++ L +     N+G V R++  F    + +   R    +  A  +SA A
Sbjct: 159 ADALAGSSAPLLVALDNITDPRNLGAVIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGA 218

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------ 118
              +                    ATT    N  +++L   +    +      G      
Sbjct: 219 AARLP------------------VATTP---NLNRTLLDWAKKGAQIVGLDAGGDVSLDD 257

Query: 119 ----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   I+ G E  GL+       ++I+S P+     SLN S A  +++ E     
Sbjct: 258 YDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLNASVAAGVVLSEFARQR 315


>gi|269303406|gb|ACZ33506.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 265

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 46/170 (27%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--------DSVRVF 74
           +   N+G + R      +  + L NP     +     SS  A   +        +   +F
Sbjct: 125 EKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISREEGKELF 184

Query: 75  SNLKEAIADLHFIYATTARNRNNF--KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                   +   ++ T+ R    +  K+ L P                  ++FG E+ GL
Sbjct: 185 K------QEGWTVFVTSPRAETMYFSKNYLGP----------------TALVFGSEKDGL 222

Query: 133 TNE-------EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           T +       EIAL       P+     SLN++ +V  + +E +    V+
Sbjct: 223 TEDWFSEDFSEIAL-------PMLGESDSLNLATSVAAVAYEVVRQRWVN 265


>gi|15618441|ref|NP_224726.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
 gi|15836061|ref|NP_300585.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|16752511|ref|NP_444773.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|33241882|ref|NP_876823.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|4376820|gb|AAD18670.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
 gi|8163389|gb|AAF73643.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|8978901|dbj|BAA98736.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|33236392|gb|AAP98480.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
          Length = 265

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 59/170 (34%), Gaps = 46/170 (27%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--------DSVRVF 74
           +   N+G + R      +  + L NP     +     SS  A   +        +   +F
Sbjct: 125 EKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISREEGKELF 184

Query: 75  SNLKEAIADLHFIYATTARNRNNF--KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                   +   ++ T+ R    +  K+ L P                  ++FG E+ GL
Sbjct: 185 K------QEGWTVFVTSPRAETMYFSKNYLGP----------------TALVFGSEKDGL 222

Query: 133 TNE-------EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           T +       EIAL       P+     SLN++ +V  + +E +    V+
Sbjct: 223 TEDWFSEDFSEIAL-------PMLGESDSLNLATSVAAVAYEVVRQRWVN 265


>gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 325

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 10/160 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + +    +I+L       N+G   R+   F    + +   R    +      SA A  ++
Sbjct: 171 EPNHPPLLIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIV 230

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +   NL  A+  L    A                   + L +   + Q + ++ G E
Sbjct: 231 PVAK-ARNLTHALQQLQAEGAFAIGLDGGGD---------VDLPDLKLADQPLVVVTGSE 280

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++       + I+S P++    SLN + A  + +++ 
Sbjct: 281 GKGISRLVRETCDQIVSIPIDKRMESLNAAVATGIALYQI 320


>gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
 gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
          Length = 241

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 57/169 (33%), Gaps = 17/169 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            + +  +  +++L   +   N+G + R      +  + +   R    +      S  A  
Sbjct: 84  TIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVIIGKNRSVGLNGTVAKVSTGAID 143

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   +V +    L++      ++      + +  +          ++           I
Sbjct: 144 HVKVAQVTNLTRTLEDLKKRSFWVVGC---DLDKSQDYRQVDYNMPLV-----------I 189

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E +G++       +  +  P+     SLN S A  +++++   + 
Sbjct: 190 VIGSEGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYNSR 238


>gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1]
 gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1]
          Length = 271

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 17/165 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRV 73
           I L   Q   N+G + R         + +        + K   S+  +     +I +  +
Sbjct: 118 IALDRIQDPGNMGTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFHVPIIQTDDL 177

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L E       +  T  + +   K        A  +           I+ G E  G++
Sbjct: 178 IKTLIELKEKGGKVVTTHLKAK---KPYYDVNYMACTI-----------IVMGSEDEGVS 223

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            E + +S+ ++  P+     SLN++ A  +MV+E ++  I     
Sbjct: 224 KEIVRISDELVKIPMPGSAESLNVAIAHGIMVFEAVKQRIKPVPT 268


>gi|227504260|ref|ZP_03934309.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
 gi|227199147|gb|EEI79195.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
          Length = 270

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 25/168 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L      ENIG + R     ++                A    + A   +    V  
Sbjct: 114 VVVLEGVGDHENIGAIFRNAAGMDVD---------------AVLLGSGAADPLYRRSVRV 158

Query: 76  NLKEAIA--DLHFIYATTA--------RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           ++   +     H     T         R+ N     L P   A+ L + +   + V ++ 
Sbjct: 159 SMGHVLRLPFAHLDGGYTTWQRSLQVLRDANFRLVSLTPHPEAVHLAQALHGAEKVALLV 218

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  GLT   +  ++     P+ P   SLN++ +  +  +E   + I
Sbjct: 219 GAEGPGLTEHAMKATDVRARIPMAPGTDSLNVATSAAIAFYERQRSRI 266


>gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum
 gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 257

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 18/151 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKE 79
           Q   N+G + R  + FN+ Q  + N      + K   +S  A   I+ +R   +   L  
Sbjct: 122 QDPGNLGTILRTCFAFNIKQ-VIFNNCVDLYNPKTIKASMGAIFKINFLRFNDSKLALNF 180

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            + +  ++ AT          +L   + AI LNE I   Q   ++ G E  GL    I  
Sbjct: 181 LLKNKFYLIAT----------ILD--KNAISLNE-ITIKQKYCLMVGNEGHGLVQTFIDH 227

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++      +N    SLN++ A  + ++E  +
Sbjct: 228 AHIKTMIKMNQT-ESLNVAVAAAIFLYELNK 257


>gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 244

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 15/167 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L       ++IL       N+G   R         + +V P+D     +  A   +  A 
Sbjct: 90  LAGKENPLLLILDGVTDPHNLGACLRNADAAGA--IAVVVPKDRSAQLNATASKVACGAA 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++  VRV           +      A        V    EA   +     +G  + I+ 
Sbjct: 148 EIVPLVRVT----------NLARTMRALQEKGVWIVGTAGEATHDIYHSKLTG-PLAIVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 197 GAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQR 243


>gi|320539497|ref|ZP_08039166.1| putative methyltransferase [Serratia symbiotica str. Tucson]
 gi|320030622|gb|EFW12632.1| putative methyltransferase [Serratia symbiotica str. Tucson]
          Length = 360

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 15/169 (8%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L+N      +  L +     N+G + R+  +F +  + L +P         R++   A+ 
Sbjct: 205 LKNPLATDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQDPAVLESGAAVRTAEGGAEH 264

Query: 67  VID-SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           +   +   F ++ +      +   TT+ ++                  +      + ++ 
Sbjct: 265 IKAINADDFLSVLDIFRQAGYTIVTTSSHKGT-------------ALAQAKLPAKIVLVL 311

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +ER GL++      +  IS        SLN+S A  +++ +    +  
Sbjct: 312 RQERDGLSDSAWQQGDMSISIGGTGKVDSLNVSVATGILLADWWRQNQA 360


>gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
           Och 149]
 gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
           Och 149]
          Length = 257

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 19/164 (11%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P ++L+       N+G + R+   F  +   ++  R    + +  + + +A   ++  
Sbjct: 106 EHPRVMLLDRVTDPHNVGAILRSAEVFGAS--AVIGTR-HHSAPETGALAKSASGALERQ 162

Query: 72  RV--FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                 NL +   A+  + +I                  E AI         + + ++ G
Sbjct: 163 PYLRVRNLADTIRALQGMGYIV------LGLDGEARDTLEQAIE----GKRDRPIALVLG 212

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            E  GL  +     ++++       F SLN+S A  + ++    
Sbjct: 213 AEGPGLREKTKETVDSLVRIDAAGQFGSLNVSNAAAIALYATRR 256


>gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 242

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGIIIPKHRAVGVTPVVAKTSTGAIEHIPISR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
 gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
 gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
 gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
 gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
 gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
          Length = 264

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  I L   Q   N+G + R      +  + L+       ++K   S+ +A   +  + +
Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSA---LHKIPL 171

Query: 74  FSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           + +     L + + + +     TA    +       +             +   ++ G E
Sbjct: 172 YEDITLSLLHDMVTESNMTTYVTA--LEHSNPYHTVRY-----------AKRTMLVLGNE 218

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+T E + L    I  P+     SLN+S A  L +++  E 
Sbjct: 219 GNGVTPEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQ 261


>gi|239828668|ref|YP_002951292.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
 gi|239808961|gb|ACS26026.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
          Length = 237

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 28/162 (17%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI---DSVRVFSNLKEAI 81
             N   V R    F +  + +V  +  +      +   +AD  +       + + +KE  
Sbjct: 59  PHNQAAVLRTAEAFGVQDVYVVTGKAPFQPNPLVTR--HADKWLTLQQKPDIVTTIKELQ 116

Query: 82  ADLHFIYAT-----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           A  + +YA+     T R  +                  I   +   ++FG E  G++ E 
Sbjct: 117 AKGYQVYASYLGEGTLRLGD------------------IDVSRPTALLFGNEHSGVSQEA 158

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           I  ++A    P+     S NIS A  L +++  E +   + +
Sbjct: 159 IRAADATFMIPMYGFVQSFNISVAAALALYDVTERARQQAGE 200


>gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
 gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
          Length = 296

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 18/153 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI------DSVRVFSNL 77
             N+G + R+     +    L+ P    P   +A   S      I       +       
Sbjct: 151 PTNVGAIFRSAAALGM-DAVLLTPACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGA 209

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            + +  L +  A  A  R++   +           E++ S + + I+ G E  GL +  I
Sbjct: 210 MDVLHKLGYKTAAMA-LRDDSVCIDD---------EKMMSEEKLAIVLGTEGDGLADHTI 259

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           A  +  +  P+     SLN++ A  +  W+   
Sbjct: 260 ADCDYTVKIPMTHGVDSLNVAAASAVAFWQLGM 292


>gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330]
 gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365]
 gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
 gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3
           str. Tulya]
 gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5
           str. 513]
 gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3
           str. 686]
 gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           M163/99/10]
 gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           B2/94]
 gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M644/93/1]
 gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M13/05/1]
 gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           M292/94/1]
 gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae
           5K33]
 gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           bv. 3 str. Ether]
 gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M490/95/1]
 gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94]
 gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
           4915]
 gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99]
 gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
 gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330]
 gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC
           23365]
 gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           ATCC 23457]
 gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
           4915]
 gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
          Length = 286

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 125 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 185 GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 233

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277


>gi|260889769|ref|ZP_05901032.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
 gi|260860375|gb|EEX74875.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
          Length = 256

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
              +G V+IL D Q   N G + R M   N   L L        + K   ++ +    ++
Sbjct: 102 EDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLN 161

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              ++   +  +  L+         + N+  +        V  E+I   +N   IFG E 
Sbjct: 162 --IIYETPENIVKFLN---------KKNYLKIATALHEDSVSYEKIELRKNNAFIFGHEG 210

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G+++  I  S+     P+     SLN+S A  + +++  E
Sbjct: 211 GGVSDYLIENSHIKAIIPIYGNIESLNVSVATGIFLYKMRE 251


>gi|291320022|ref|YP_003515280.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
 gi|290752351|emb|CBH40322.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
          Length = 177

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 15/160 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L +P++  N   + R  +     +L ++ P     + K  S  A    + D    V  
Sbjct: 4   IVLFEPEIPPNTANIIRTCFAIG-AKLHIIKPISFSLNPKYLSRPAAGRLLSDIEHEVHD 62

Query: 76  NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +      D +  Y T    R   K+        +   +     + + ++FG+E  G+
Sbjct: 63  SYSDFYNKYKDKNIYYIT----RYGLKTYTD-----VNFKKEYEDNEEIWLMFGKESTGI 113

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + +    +  +  P+     S+N++  V ++ +E M  
Sbjct: 114 DKQVLHNNIDNCLRIPMISKMRSINLANCVAIVGFEVMRQ 153


>gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
          Length = 286

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARV-TNL 199

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T                      +    G ++ ++ G E  G++
Sbjct: 200 VQAVQQLKETGFWVFGT--------------DMIGTNFQKWNAKG-SIALVIGNEGKGMS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec]
 gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec]
          Length = 386

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G V+ L       N+G V R+   F  + + +   R    +  A  +SA A   +   R
Sbjct: 231 PGLVVALDGVTDPRNLGAVVRSAAAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVAR 290

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +    L+       F+    A             +  + L+E   +   + ++ G E 
Sbjct: 291 AVNLTRTLRSFAESGLFVVGLAA-------------DGEVSLDELQVATDPLVLVIGSEG 337

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            GL+       +  +  P+     SLN   A  + + E 
Sbjct: 338 KGLSRLVGECCDLRVRIPMAGQVESLNAGVATGIALSEI 376


>gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 249

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS---NLKE 79
             N+G   R           ++ P+D      A  +  ++ A   +    V +    L E
Sbjct: 111 PHNLGACLRVADGAGAH--AVIAPKDHAVGLNATVAKVASGAAETVPYFMVTNLARTLGE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 +   T+              + A     +        ++ G E  G+       
Sbjct: 169 LKERNIWCIGTS--------------DDAPQTLYQSDLKGPTALVLGAEGEGMRQLTRKT 214

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +A++S P+     SLN+S A  + ++E +   
Sbjct: 215 CDALVSIPMKGGVESLNVSVASGVCLYEALRQR 247


>gi|145297940|ref|YP_001140781.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850712|gb|ABO89033.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 169

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 27/169 (15%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            P +P  ++++    I LV+P+  EN+G V RA   +   ++     R     E AR  +
Sbjct: 13  NPQSPT-EDASPYCCIGLVNPKSPENVGAVMRAAGCYGADEVYYTGNRF----ELARRFA 67

Query: 62  ANADCVIDSVRVFSNLK----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
                  D+ ++   +     EA+ D      T          ++   E A  L + +  
Sbjct: 68  T------DTKQMVDKIPLLGVEALLDFVPTGCT--------PVLVDLIEGATSLPDYVHP 113

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +    IFG E   L     A    +I  P       +N++ +V ++++
Sbjct: 114 -ERAFYIFGPEDGTLDPARFAAVKEVIYVPTLGC---MNLAASVNVILY 158


>gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
 gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 20/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R         + +   R    +     +SA A       +V   
Sbjct: 98  IILDNVEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNI 157

Query: 74  FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++E     + F+ A                +        +     +G++ G E  G+
Sbjct: 158 VRTIEELKEKGIWFVCA----------------DMGGETMYDLDLTGPMGLVIGNEGEGV 201

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +       +   S P+     SLN S A  ++ +E +   +  + K
Sbjct: 202 SRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRLAKAGK 247


>gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 249

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           +IL   +   N+G + R      +  + +   R    +     +S  A   +   RV   
Sbjct: 103 VILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNL 162

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + ++E      +++ T               + A     R  +   V +I G E  G++
Sbjct: 163 VNIVEELKKRNVWVFGT---------------DMAGDDYRRWDANGAVALIIGNEGRGIS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                  + +++ P+     SLN S A  L++++
Sbjct: 208 PLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQ 241


>gi|224000635|ref|XP_002289990.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220975198|gb|EED93527.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 302

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKAR-SSSANADCVIDSV 71
           VI++       N   + R      +  + +++P+        E A    + +        
Sbjct: 6   VIVVERCTNDHNYSAILRTAEALGVQHVYIISPKTINSTLVDEAATEWLTVHE------- 58

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F + KE I         T R+ N    V    + A  L E     Q V I+FG E  G
Sbjct: 59  --FDDTKECIE--------TLRSENREIWVTDLSQVASCLTEEGI--QKVAIVFGTEAVG 106

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            T E +  ++  +  P+     SLN+S A  L+V +        +    +++ 
Sbjct: 107 CTAEMLNAADLRVYLPLRGFADSLNLSVATALVVHQMFVLDPTLAGGMSEDER 159


>gi|198463831|ref|XP_001352955.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
 gi|198151430|gb|EAL30456.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
          Length = 405

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 26/183 (14%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
              +L +      ++  + +   N+G + R       +Q+ +          KA      
Sbjct: 228 EQERLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCG 287

Query: 64  ADCVIDSVRVFSNL----------KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
                  V +  ++           +A  D H   A + + +   +  +   + A +   
Sbjct: 288 GQF---RVPIRDDVSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQI--- 341

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWE 167
               G +  +I G E  G++ E  +  N        +  P+     SLN++ A+ L+++E
Sbjct: 342 ----GSHNLLIIGGESHGVSEEAYSFMNLVGGKGRCVYIPLAAGIDSLNVASALTLLLFE 397

Query: 168 CME 170
              
Sbjct: 398 LRR 400


>gi|221054155|ref|XP_002261825.1| SpoU rRNA Methylase [Plasmodium knowlesi strain H]
 gi|193808285|emb|CAQ38988.1| SpoU rRNA Methylase, putative [Plasmodium knowlesi strain H]
          Length = 264

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 27/148 (18%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA---IAD 83
           NIG + R+   F ++++ +V+      +E            I ++  FSN+KE    +A+
Sbjct: 40  NIGSIVRSCVAFGVSKIFVVS---RKRNEINFFGQMGTCKYI-TIEYFSNMKELRIHLAN 95

Query: 84  LH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +  +YA    +R            AI +    F  ++   +FG E  G+ +E ++  + 
Sbjct: 96  NNILLYACEITDR------------AIAVTRTPFVNKDTAFLFGNEGTGINDETLSYCDK 143

Query: 143 IISFPVNPLFP----SLNISQAVLLMVW 166
           II  P    +     SLN+S +  +++ 
Sbjct: 144 IIYIP---QYGNGTCSLNVSVSCAIILH 168


>gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
 gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
          Length = 286

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARV-TNL 199

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T               +      ++  +  ++ ++ G E  G++
Sbjct: 200 IQAVQQLKEIGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 250

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VI+ VD     N G + R         + L        + K+  +SA +   I ++ V  
Sbjct: 100 VIVAVDISEPGNAGTLIRVADAMGADAVVLAGNSVDPFNGKSLRASAGS---IFNIPVVP 156

Query: 76  --NLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++    ADL     A  A   +   S+                       FG E  GL
Sbjct: 157 EGDVGAIAADLAQTGVALLATTLDGDLSLD---------EADAVLAGPCAWFFGNEAHGL 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                AL+   I+ P+     SLN++ A  + ++
Sbjct: 208 DGATAALATHRINIPMRGGAESLNLASAASICLY 241


>gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251
           2'-o-methyltransferase) [Cupriavidus taiwanensis LMG
           19424]
 gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Cupriavidus taiwanensis LMG
           19424]
          Length = 247

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 21/169 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70
              +++L       N+G   R           ++ P+D      A  +  ++ A   +  
Sbjct: 95  TPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDRSVGLNATVAKVASGAAETVPY 152

Query: 71  VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + V +    L+E      ++  T      +   +                     I+ G 
Sbjct: 153 ITVTNLARTLRELQERGIWVIGTADGTEKSLYDIDF--------------KGPTAIVMGA 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E  G+        + ++  P+     SLN+S A  + ++E +    +  
Sbjct: 199 EGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQRRLPR 247


>gi|190575636|ref|YP_001973481.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190013558|emb|CAQ47193.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 277

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           P A  L +  +GPV+ L    V      N G + R+  +F +  L L        S  A 
Sbjct: 116 PLAQWLADLEQGPVLALWLDGVG--NPHNFGAILRSAAHFGVKALLLPAGSTLALSGAAA 173

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFS 117
             +      +  V++     +A+A L    +   A        V            R   
Sbjct: 174 RVAEGGAESVPLVQLPET-AQAMAQLRSAGFGLAATLVEGGDDVF-----------RASL 221

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +  + G E  G+        +  +S P +    SLN++ A  +++ +     
Sbjct: 222 PERLVYVMGAEGEGMDRGLAGQCDLQVSIPGSGAVESLNVASATAVLLAQWASRR 276


>gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 244

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 25/153 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
           N G + R      +  + +  P+ G    +  A  +SA A   I   +V  ++K+AI   
Sbjct: 109 NFGAIIRTAECTGVHGIII--PKKGGAPVNGVAIKTSAGAAFNIPIAKV-DHIKDAIYYL 165

Query: 82  --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             + +  + AT       F++                      I+ GRE  G++   + +
Sbjct: 166 QGSGVQVVAATEKTETTLFETDFT---------------SPTAIVMGREDSGVSPGVLKI 210

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +     P+     SLN+S A    ++E +   
Sbjct: 211 VDKQAKLPLKGSIASLNVSVACGAFLYEIVRQR 243


>gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
 gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
          Length = 264

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G  I L   Q   N+G + R      +  + L+       ++K   S+ +A   +  + +
Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSA---LHKIPL 171

Query: 74  FSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           + +     L + + + +     TA    +       +             +   ++ G E
Sbjct: 172 YEDITLTLLHDMVTESNMTSYVTA--LEHSNPYHTVRY-----------AKRTMLVLGNE 218

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+T E + L    I  P+     SLN+S A  L +++  E 
Sbjct: 219 GNGVTPEVMNLCTNRIMIPMYGDMESLNVSVAAALCMYKVQEQ 261


>gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
 gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
          Length = 251

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 25/168 (14%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + P  IL  + +   N+G + R   N      + +   R    +      SA A      
Sbjct: 100 EAPFFILCDEIEDPHNLGAIIRT-ANLAGAHGVIIPKRRAVGLTSTVAKVSAGALNYTPV 158

Query: 71  VRVFS---NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            RV +    + E + D    F+                  +    L   +    ++G+I 
Sbjct: 159 ARVTNLSRTIDE-LKDKGMWFVCG----------------DMGGELMYDLNLTGSIGLII 201

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G++       + I S P+     SLN S A  ++ +E +   +
Sbjct: 202 GNEGNGVSRLVKEKCDYIASIPMKGDIDSLNASVATGVLAFEIVRQRM 249


>gi|321309539|ref|YP_004191868.1| RNA methyltransferase TrmH [Mycoplasma haemofelis str. Langford 1]
 gi|319801383|emb|CBY92029.1| RNA methyltransferase TrmH group 3 [Mycoplasma haemofelis str.
           Langford 1]
          Length = 244

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 9/159 (5%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +  ++IL   Q   N+G + R    F +  + L   +    + +    S+    +  +  
Sbjct: 93  RSLILILDHLQDPFNVGAILRTCCAFEVDGVILPKDKSAPLNHEVTLKSSQGYSLNINTV 152

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             SNL  AI        T  +NR  +              + +       +I G E  G+
Sbjct: 153 EVSNLNNAI--------TKLKNRG-YWVYSTEIGPNTKSFKEVEYADKCALIMGSEGKGV 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +      S+  +  P+     SLN+S A  +++ E  + 
Sbjct: 204 SKILRDNSDVKVHIPMKNNVNSLNVSVAAGIIISEISDQ 242


>gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
 gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
          Length = 241

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 18/159 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   Q   N+G + R+   F    + L   R    +     SS+ AD  +  V V +N
Sbjct: 95  VALDHLQDPHNVGAILRSADQFGALGVILPERRAVKDAATISKSSSGADAFVP-VVVETN 153

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
           L+ A+  +          +     V         ++E   SG  V ++ G E  GL+   
Sbjct: 154 LRRALLHV----------KEAGFWVYGADMEGQPVHEVDLSG-RVCLVLGAEGKGLSRLL 202

Query: 135 -EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            EE+   + +++ P      S N+S A  ++++E     
Sbjct: 203 REEV---DLLVAIPARGHVDSFNVSVAAGILMYEVRRQQ 238


>gi|257057053|ref|YP_003134885.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256586925|gb|ACU98058.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 256

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 19/177 (10%)

Query: 1   MTPYAPQLQN-SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKA 57
           M P A  L+  +   P+++L       N+GM+ R      +    +V PR G        
Sbjct: 91  MRPLAAALEGRTPPSPLLVLDGITTSANVGMILRTATAAGIPG--VVVPRRGVAALDPLV 148

Query: 58  RSSSAN---ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
             +SA       V+        ++  +   + +YA  AR      S+             
Sbjct: 149 VKASAGVAFRAPVLRCATAVEAVESLVEVGYTVYALGARADAESTSLFDTDVP------- 201

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 V  + G E  G++     L    +S P+     SLN+S A  ++ ++ +  
Sbjct: 202 ----SRVAFVLGGETEGVSAAVADLVAGWVSIPMPGDVESLNVSAAAAVVCFDLVRR 254


>gi|224540931|ref|ZP_03681470.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526164|gb|EEF95269.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM
           15897]
          Length = 170

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 53/169 (31%), Gaps = 13/169 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++LV P + +N G + R       T L ++ P     ++     +           V   
Sbjct: 4   VVLVHPAIPQNTGNIMRTCAAT-HTPLHIIKPTGFKLNDPRMKRA-----------VMDY 51

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                  ++  +    +               +   +         + FG E  G+ ++ 
Sbjct: 52  FDHLTFKVYENFEEFEKENPGIYHFFTRYSKKVYSEDDFKQEGEHYLFFGHEHDGIPHDI 111

Query: 137 IAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           +    +  +  P+     SLN+S  V + V+E +          V+ Q 
Sbjct: 112 LKKYIDDCVRIPMYGDSRSLNLSNTVAIGVYEALRQQGYPDLSTVEVQK 160


>gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens
           DSM 3043]
 gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 261

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 11/167 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q S+   ++IL       N G   R+        + +   +    +   R  +  A  V 
Sbjct: 106 QQSSPPLLLILDGVTDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADV- 164

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             V   +NL  A+  L           +    V    E+A  L +   +G  + ++ G E
Sbjct: 165 TPVYQVTNLARAMGRLKT---------HGVWIVGTAGESAQCLYDIDLAG-PLAVVMGAE 214

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             G+        + +   P+     SLN+S A  + ++E +     S
Sbjct: 215 GKGMRRLTRDACDLLAKLPMAGSVSSLNVSVATGVCLFEAVRQRQSS 261


>gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 330

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 16/167 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++ L       N+G V R+   F    + +   R    +      SA A   +   R
Sbjct: 175 TPLLVALDQVTDPHNLGAVLRSTGAFGGDGVIIPERRSVGVNATVWKVSAGAAARVPVAR 234

Query: 73  ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +   L+    +  F+                       + +   +   + ++ G E 
Sbjct: 235 ETNLVRTLETLKKEGCFVVGLDGGGETL-------------MEDLSLADSPLVLVTGAEG 281

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GL+       + I S P++    SLN + A  + ++E       ++
Sbjct: 282 AGLSRLVRETCDVIASIPISQTVESLNAAVATGISLYEVDRLRRAAA 328


>gi|225872630|ref|YP_002754087.1| RNA methyltransferase, TrmH family protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 283

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 24/176 (13%)

Query: 11  SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCV 67
            A  P ++LV    Q   N+G + R+   F  +  L L    + W    A+   A+A  V
Sbjct: 125 PAHAPALLLVTASLQDPGNLGTLIRSAEAFGASGILTLPGTVNLWN---AKVVRASAGSV 181

Query: 68  IDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                V    +E +A L      ++ATTA + +                 +    Q   +
Sbjct: 182 FRMPVVARCEEEVLARLAAQGVTLFATTA-DGDLP-------------ATQAALTQPCAL 227

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           + G E  GLT   +  ++A ++ P      SLN + A  ++++E       S  + 
Sbjct: 228 LIGNEGAGLTPHLLQAADARLAIPTPGPVESLNAAIAGSILLYEASRQRAASQREQ 283


>gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
           marinus str. MIT 9202]
          Length = 326

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N A   ++ L       N+G + R+   F+   + +   R    +      +A A   + 
Sbjct: 176 NCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHLQ 235

Query: 70  SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             RV  NL  A+  L      I   +                  +          + +I 
Sbjct: 236 VSRVV-NLNRALEMLKKNGFLIVGLSG--------------DGQLSLSNFSEKVPLVVIV 280

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++       + ++S P+     SLN S A  + ++    
Sbjct: 281 GSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325


>gi|58336980|ref|YP_193565.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227903539|ref|ZP_04021344.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC
           4796]
 gi|58254297|gb|AAV42534.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227868426|gb|EEJ75847.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC
           4796]
          Length = 184

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 62/190 (32%), Gaps = 38/190 (20%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V+V 
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVKVH 59

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----------SGQNVG 122
              +L   +                    L P +   ++++             S +N  
Sbjct: 60  RHDDLNAFLKS------------------LGPDDEMYLISKFSSKNYVDVDYTDSKKNYY 101

Query: 123 IIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            +FG+E  GL    +    +  +  P++      N+S +V +++ E +      + +   
Sbjct: 102 FVFGKETTGLPETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMEETH 161

Query: 182 EQNTPATKGE 191
                  K +
Sbjct: 162 HYENDKLKDD 171


>gi|91794831|ref|YP_564482.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans
           OS217]
 gi|91716833|gb|ABE56759.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans
           OS217]
          Length = 153

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N   + L L+ P      EK    +       D   V   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNG-SHLHLIEPLGFDLEEKKLRRA--GLDYADLANVTRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +  +A+A    +  TT  +R        P        + +       ++FG E  G
Sbjct: 61  KNYDDFLQAMAGKRIMVCTTKGSR--------PHTELEFAKDDV-------LLFGPETRG 105

Query: 132 LTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L  + I  +     +  P+     SLN+S +V ++ +E    
Sbjct: 106 LPMDIINAAPLEQRLRIPMMSSSRSLNLSNSVAIISYEAWRQ 147


>gi|13472492|ref|NP_104059.1| hypothetical protein mlr2808 [Mesorhizobium loti MAFF303099]
 gi|14023238|dbj|BAB49845.1| mlr2808 [Mesorhizobium loti MAFF303099]
          Length = 265

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 17/169 (10%)

Query: 2   TPYAP-QLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKA 57
           TP AP  L ++      V++LV     +N+G + R    F      L++     P   KA
Sbjct: 105 TPQAPGPLLDALPDQALVLVLVGIANHDNMGSIFRNAAAFG-ADAVLMDTTCCDPLYRKA 163

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
              S  A   I             +    + A     R   +  L+P+            
Sbjct: 164 IRVSVGAALKIPFASFTDT-----SGFTAMLA----ERGFEQLALSPR--GRTDIRDAKP 212

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + + +  G E  GL    +A     +   ++  F SLN++ A  + + 
Sbjct: 213 AERLALYLGTEGEGLPERLLARLQT-VRITMSKGFDSLNVAAASAIALH 260


>gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum
           H04402 065]
          Length = 257

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL + +   N G + R         + +   R+   +     +SA A   +   +V +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTN 167

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                   ++ +     + +     +             +     + ++ G E  G++  
Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + ++  P+     SLN S A  ++++E ++  + S 
Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257


>gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 269

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L       +++L   +   N+G V R+        + + NP     +     SS  A  
Sbjct: 113 DLDLPESPLIVVLESVEKPGNLGAVLRSADASKADAVIVCNPLTDLFNPNLIRSSIGAIF 172

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                     +                   N K + A  + +    +    G    I+ G
Sbjct: 173 ------TVPTVA-----CSSQACMNFLKERNIKILTAQLQDSAPYYDSDMRGG-TAIVMG 220

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GLT+     ++A I  P+     SLN+S +  ++++E +   
Sbjct: 221 TESTGLTDAWRKAADAHIRIPMLGQLDSLNVSVSAAILMFEAVRQR 266


>gi|254562622|ref|YP_003069717.1| TRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
 gi|254269900|emb|CAX25878.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           DM4]
          Length = 269

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 14/175 (8%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P    +   A  P ++  LV     +N+G + R    F    + L          KA   
Sbjct: 107 PPPESVIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SA A   +   R  S    A+ DL       A         L P        +R+     
Sbjct: 167 SAGAALTVPFARAPS--GAALLDL-------AERHALTPLALTP--GGSETLDRLDPPAR 215

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             ++ G E  GL    +A +   +   + P F SLN++ A  + +       +  
Sbjct: 216 ALLLLGTEGPGLPESLMARARR-VRIAMAPGFDSLNVATAGAIALHHLAGRRLAG 269


>gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Bf]
 gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
           657]
 gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Bf]
 gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Ba4 str. 657]
          Length = 257

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL + +   N G + R         + +   R+   +     +SA A   +   +V +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTN 167

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                   ++ +     + +     +             +     + ++ G E  G++  
Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + ++  P+     SLN S A  ++++E ++  + S 
Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257


>gi|182414536|ref|YP_001819602.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177841750|gb|ACB76002.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 160

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 31/176 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNL--TQLRLVNPRDGWPSEKARSSSA----NADCVIDS 70
           ++L  P++  N G V R      L  ++L L++P     +++    +      A  V + 
Sbjct: 4   VVLFQPEIAPNTGNVGRMCA---LTRSRLHLIHPLGFVINDRNLRRAGMDYWRALDVHEH 60

Query: 71  VRVFSNL-KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            R +++    A+A       TT   R                + R   G   G++FG E 
Sbjct: 61  -RDWASFRASAVAPRRLWLFTTKSTR-------------CFWDARFEDGD--GLVFGNEG 104

Query: 130 WGLTN---EEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            G       EI      ++ P  NP   SLN+S A  +  +E +    + ++   +
Sbjct: 105 SGAPEWLHAEIGDEQR-VTIPHANPELRSLNLSTAAGIATYEALRQVGLPTQSRAE 159


>gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54]
 gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila
           LSv54]
          Length = 295

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 17/170 (10%)

Query: 10  NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  + P II+ D  Q   N+G + R+        + L   R       A  SSA A   +
Sbjct: 139 DRGEKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAGAISHM 198

Query: 69  DSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           D  +V     +L E      +++   A    +  S+                     I+ 
Sbjct: 199 DICQVTNLVKSLAELKKVGAWVFG--AIKDADAVSLFDADLNVP-----------ACIVV 245

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           G E  G+        +  +S P+     SLN S A  ++++E M  S+VS
Sbjct: 246 GSEGTGIRPLVRRECDIQLSIPMVGELDSLNSSVAAAVILFEAMRQSLVS 295


>gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC
           13950]
          Length = 281

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           EN+G + R      +  +   +        +A   S     ++   R         A   
Sbjct: 135 ENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYAR---------ATCW 185

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                T +        + P E+A  L E      G+ V ++ G E  GLT   +  S+  
Sbjct: 186 PAELMTLKENGFRLLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTPATLRCSDVR 245

Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167
           +  P++    SLN++ A  L  +E
Sbjct: 246 VRVPMSRGTDSLNVATAAALAFYE 269


>gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 383

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 14/148 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    LV       S  A  ++   A+ V        +    + +
Sbjct: 246 PHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLTE 302

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      RN   +++        +  +        I+ G+E  GL++      +  
Sbjct: 303 F----------RNAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVK 352

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        SLNIS A  +++ E    
Sbjct: 353 VSIGGTGKVESLNISVATGILLSEWWRQ 380


>gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
 gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 257

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 25/164 (15%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P ++L+       N+G + R+   F  +   ++  R    + +  + + +A   ++ 
Sbjct: 105 AEHPRVLLLDRVTDPHNVGAILRSAEVFGAS--AVIGTR-HHSAPETGALAKSASGALER 161

Query: 71  -----VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VG 122
                VR  S+   A+  + +I              L     A    E+   G+    V 
Sbjct: 162 QPYLRVRNLSDTIRALQGMGYIV-------------LGLDGEASDTLEQAIEGKRDRPVA 208

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +     ++++       F SLN+S A  + ++
Sbjct: 209 LVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNVSNAAAIALY 252


>gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 249

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           +IL   +   N+G + R      +  + +   R    +     +S  A   +   RV   
Sbjct: 103 VILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNL 162

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + ++E      +++ T               + A     R  +   V +I G E  G++
Sbjct: 163 VNIVEELKKRNVWVFGT---------------DMAGDDYRRWDANGAVALIIGNEGRGIS 207

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                  + +++ P+     SLN S A  L++++
Sbjct: 208 PLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQ 241


>gi|294055486|ref|YP_003549144.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614819|gb|ADE54974.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 188

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 28/175 (16%)

Query: 8   LQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEKARSSSAN 63
           L      P+I+L++  Q   N+G   R      +T L    P     G        S   
Sbjct: 33  LIEQTDNPLILLLEGVQDPHNLGACLRTASGAGVTALL--APMKGSCGITHTVRDVSCGG 90

Query: 64  ADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           AD V      ++ ++    ++    +  I  T+ R                 +       
Sbjct: 91  ADEVPFLKIKNTSQLLRKFRD--QGIQ-IIGTSDR--------------GTEMLYDTDLT 133

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
               II G E WGL      L + ++S P+      LN+S +  + ++E +   +
Sbjct: 134 GPTCIILGSEGWGLRKVTGDLCDQLVSIPMAGKVDCLNVSVSAGVCLYEAVRQRL 188


>gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
           CMCP6]
 gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
           YJ016]
 gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           vulnificus MO6-24/O]
 gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio
           vulnificus CMCP6]
 gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           vulnificus MO6-24/O]
          Length = 247

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 19/173 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L   A   ++IL       N+G   R      +    +V P+D     +      +  A 
Sbjct: 90  LAKHASPLLLILDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPMTATVSKVACGAA 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             +  VRV +             A T R         V    EA   + +   +G ++ I
Sbjct: 148 ETVPLVRVTN------------LARTMRHLQEQGIWIVGTAGEATHDIYQAKLTG-SLAI 194

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + G E  G+        + +I  P+     SLN+S A  + ++E +   + S 
Sbjct: 195 VMGAEGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVRQRLASQ 247


>gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51]
 gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
 gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
          Length = 246

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L + +   N+G + R      +  + +   R    +     +SA A   +   RV  
Sbjct: 98  ILVLDEVEDPHNLGALIRTADAAGVHGVIIPKRRSVSLTATVAKTSAGAVEHVLVARV-G 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL + + DL                V   +     +     +G  V I+ G E  GL+  
Sbjct: 157 NLVQTLKDLQKAGC----------WVSGAEAEGTEVYRSDLTGARV-IVIGSEGKGLSRL 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + I+S P+     SLN S A  ++++E +   
Sbjct: 206 VKETCDEIVSLPMKGRINSLNASVAGSILMYEVLRQR 242


>gi|85707839|ref|ZP_01038905.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85689373|gb|EAQ29376.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 266

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 16/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R         L L++      S +A  +S  A     +   R    +     
Sbjct: 129 PGNLGTMLRTGDAVGAGGLILIDDCADPFSAEAVRASMGAVFTQGMAQARWDEFVPWLRG 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A + R+   ++                       I+ G E  GL     A  + 
Sbjct: 189 GPGQLVAASLRDAVPYRG--------------AAYQAPCFILVGNESQGLPEAYEAECDL 234

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ P+     SLN + A  ++ +E + +
Sbjct: 235 RVTMPMKGRADSLNAAVAGAVLAYEVLAS 263


>gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9]
 gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9]
 gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           thermophilus ND03]
          Length = 247

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 19/165 (11%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+I IL       N G + R      +T + +   R    +     +S  A   I   
Sbjct: 98  ENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIA 157

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           RV +    L +      +++ T               +     + +  +   + +I G E
Sbjct: 158 RVTNLSQTLDKLKEAGFWVFGT---------------DMDGTASHKWNTAGKLALIIGNE 202

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G++       + +I+ P+     SLN S A  ++++E   N +
Sbjct: 203 GKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLMYEVYRNRL 247


>gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614]
 gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp.
           JS614]
          Length = 314

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
             ++ A   ++ L       N+G V R+   F    + +   R    +  A  +SA A  
Sbjct: 158 AAESGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAA 217

Query: 67  VIDSVRVFSNLKE--AI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +  + +++  A   A    +    A + +     L              +   + 
Sbjct: 218 RLPVAQTVNLVRQLKAYQEAGC-MVVGLAA-DGDVSLPDLD------------LADGPLV 263

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  GL+       + ++S P+     SLN   A  + ++   E  
Sbjct: 264 VVVGSEGSGLSRLVSETCDQLVSIPMANQLESLNAGVAASVALYAISEAR 313


>gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56]
          Length = 252

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 12/146 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R       + + L+       S K   S   ++  +  VR+      A  
Sbjct: 119 QDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGSNFHLPLVRM------AKE 172

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D        A+ +    S+L    +A  ++ +I +  +  +I G E  G+++E +  ++ 
Sbjct: 173 DCF------AQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADK 226

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
           ++   +     SLN++ A  ++++  
Sbjct: 227 LVHIDMPGQAESLNVAVAAGILMFSL 252


>gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
 gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
          Length = 285

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L   +   N+G + R         + +   R    +     +S  A   +   RV +N
Sbjct: 139 ILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGAIEHVPVARV-TN 197

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +AI +L     ++Y T    ++        ++    L         +G++ G E  G+
Sbjct: 198 LVQAIKELKERGLWLYGTDMEGQDY-------RQWETTL--------PIGLVMGNEGKGI 242

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + +++ P+     SLN S A  L+++E     
Sbjct: 243 SRLVKEQMDGMVTIPMTGHVQSLNASVAASLLMYEVYRGR 282


>gi|323699577|ref|ZP_08111489.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           ND132]
 gi|323459509|gb|EGB15374.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           desulfuricans ND132]
          Length = 253

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 13/173 (7%)

Query: 2   TPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           TP    L+ + + P   ++ L   Q   N+G++AR ++      L +      +    A 
Sbjct: 89  TPLEQLLEEALQAPLPLIVALDQVQDTGNVGVLARTVYALGGAGLIVCQHHGAYIGAGAV 148

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            SSA A   +   +V  NL  A+ D          +   + + LAP    +   +     
Sbjct: 149 RSSAGALNKLPVAKV-GNLANAMKDCV------NYDYTLYCARLAPDSDNVYTADLQTP- 200

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +I G E  G+       +   +  P    F SLN++QA  ++V E    
Sbjct: 201 --AVLILGNEEKGIRPGVAKFAQHSLHIPFLREFDSLNVAQAGAIIVSEFARR 251


>gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 270

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++    Q   N+G + R    F    +          + K   ++  +   +  +R   
Sbjct: 126 VVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185

Query: 76  N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L + + D  F              V  P     +   ++   +   ++ G E  G++
Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKVVPDKKFCVVIGNESEGVS 232

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    ++   I  P+     SLN + A  ++++E  + 
Sbjct: 233 DSFAKVAARKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
           DSM 4359]
 gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
           DSM 4359]
          Length = 216

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 14/166 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++     ++IL   Q   N+G + R         + +  P+D            +A  V
Sbjct: 58  LESKTPPLIVILDQIQDPHNLGAIVRTSVGAGANGIII--PKDKSVKVTETVVKVSAGTV 115

Query: 68  I-DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
               + + +NL   I +L          +     V A       + E  F+      +FG
Sbjct: 116 FRAKIAIVTNLARTIEEL----------KERGVWVYASDVNGTPIYEEDFT-LPTAFVFG 164

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G+        + +++ P+     SLN+S +V ++++E +   
Sbjct: 165 NEGEGIRRLVKEKCDRVLTIPMENDIDSLNVSVSVGIVLFEAVRQR 210


>gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51]
 gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 285

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 12/159 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   Q   N G + R      +TQ+ L        + K   S+  A   ++        
Sbjct: 139 ILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIATHCQP- 197

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +E +             R++   V         L E  F+ Q + ++ G E  G +    
Sbjct: 198 EEILKVC----------RSHKIPVFVGDAEGTDLYETHFA-QPMALVVGNEGNGPSAAFR 246

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 I+ P++    SLN++ A  ++++E       ++
Sbjct: 247 GPGVKRITIPMSHQVESLNVAMATGIILYEVRRRMTSTT 285


>gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
 gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           F str. Langeland]
 gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           F str. 230613]
          Length = 257

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL + +   N G + R         + +   R+   +     +SA A   +   +V +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTN 167

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                   ++ +     + +     +             +     + ++ G E  G++  
Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  + ++  P+     SLN S A  ++++E ++  + S 
Sbjct: 217 TKSKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257


>gi|332520270|ref|ZP_08396732.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043623|gb|EGI79818.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 166

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 15/148 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL-- 84
           NIG + R    F + ++     +      K   +S   +  I        ++E I +L  
Sbjct: 29  NIGSLFRTADAFGVEKIIFCGSK-IPLGRKMTKTSRTTEKFIKYQER-ETVEEVIIELKK 86

Query: 85  -HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
            ++         +N K +             + + + + I+ G E +G++N  +  ++AI
Sbjct: 87  SNYSI-LALEITDNSKPIHTFN---------VPTKKPIAIVIGDENFGISNTALKQTDAI 136

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I   +     S+N+ QA  + ++E  + 
Sbjct: 137 IHIDMFGQNSSMNVVQATTVALYEITKQ 164


>gi|253990660|ref|YP_003042016.1| methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782110|emb|CAQ85274.1| similar to putative trna/rrna methyltransferase yfif escherichia
           coli [Photorhabdus asymbiotica]
          Length = 338

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 15/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             NIG + R+  +F +  + L +          R++   A+ +  ID+  + + L +   
Sbjct: 200 PHNIGAIMRSCAHFGVQGVVLQDVALLESGAAIRTAEGGAEHIKGIDADSLTTTLNKFRK 259

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I  T++                     +    + + ++ G ER GL++      + 
Sbjct: 260 AGYTIVTTSS-------------HKGSTNLAKAELPEKMVLVLGEERDGLSDSTWEYGDM 306

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +      L  SLN+S A  +M+ E    
Sbjct: 307 SLFVGGTGLVESLNVSVATGIMLAEWWRQ 335


>gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16]
 gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16]
          Length = 247

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 21/169 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70
              +++L       N+G   R           ++ P+D      A  +  ++ A   +  
Sbjct: 95  TPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDRSVGLNATVAKVASGAAETVPY 152

Query: 71  VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + V +    L+E      ++  T      +   +                     I+ G 
Sbjct: 153 ITVTNLARTLRELQERGIWVIGTADGTEKSLYDIDF--------------KGPTAIVMGA 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E  G+        + ++  P+     SLN+S A  + ++E +    +  
Sbjct: 199 EGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAVRQRRLPR 247


>gi|115522972|ref|YP_779883.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
 gi|115516919|gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
          Length = 153

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 25/170 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RV 73
            I L  P + +N G + R     ++ +  ++ P     S++    +      +D V    
Sbjct: 2   RIALFQPDIPQNTGTILRLCACLDV-EAHIIEPAGFPVSDRNFRRA--GMDYLDQVSLTR 58

Query: 74  FSN---LKEAIAD--LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             +    ++   D     I  TT    + F+   AP +                ++ GRE
Sbjct: 59  HDSWTKFEQWRRDQGCRLILLTTKGLISYFEYRYAPSDV---------------LMLGRE 103

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             G+ +E  A+++A ++ PV P   SLNI+ A  ++V E +  ++   E+
Sbjct: 104 SAGVPDEVAAVADARLAIPVKPGLRSLNIAVAAAMVVGEALRQTVWQGER 153


>gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
 gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
          Length = 252

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 12/146 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R       + + L+       S K   S   ++  +  VR+      A  
Sbjct: 119 QDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVMRSMQGSNFHLPLVRM------AKE 172

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D        A+ +    S+L    +A  ++ +I +  +  +I G E  G+++E +  ++ 
Sbjct: 173 DCF------AQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEGAGVSDEAVKAADK 226

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
           ++   +     SLN++ A  ++++  
Sbjct: 227 LVHIDMPGQAESLNVAVAAGILMFSL 252


>gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 268

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G   RA     +    LV+P    P   ++   S      +   RV ++   A+  L 
Sbjct: 133 NVGAGFRAAAALGV-DAVLVSPTCADPLYRRSVKVSMGTVFQVPWTRV-ASWPGALDQL- 189

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAII 144
                  R      +  A  + +I L+E        + +IFG E  GL+   +  ++  +
Sbjct: 190 -------REHGFVTAAFALTDDSISLDELAARRDAKLALIFGTEGHGLSPHVLRQTDLTV 242

Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
             P+     SLN++ +  +  +
Sbjct: 243 KIPMAGGVDSLNVASSAAVAFY 264


>gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
 gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
          Length = 288

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L   +   N+G + R         + +   R    +     +S  A   +   RV +N
Sbjct: 142 ILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGAIEHVAVARV-TN 200

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L +AI +L     ++Y T    ++        ++    L         +G++ G E  G+
Sbjct: 201 LVQAIKELKERGLWLYGTDMEGQDY-------RQWETTL--------PIGLVMGNEGKGI 245

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + +I+ P+     SLN S A  L+++E     
Sbjct: 246 SRLVKEQMDGMITIPMTGHVQSLNASVAASLLMYEVYRGR 285


>gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 310

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 15/156 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FS 75
           +L       N+G + R+   F    L            ++   +  A   ++ VR     
Sbjct: 163 VLDQVTDPHNVGAILRSATAFAADGLI---TTSRHSPRESGVLAKAASGALEHVRQIEVR 219

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL E +           R        +          E+   G+ + ++ G E  GL  +
Sbjct: 220 NLAETLE----------RLSKLGFRTIGLDSEGESDFEQAIEGEKIAVVLGAEGKGLRQK 269

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             A  + +    +     SLN+S A  + ++     
Sbjct: 270 TRATCDVLARLEMPGAIHSLNVSNAAAVALYAIRRR 305


>gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629]
          Length = 255

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 28/169 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL   +   N+G + R         + +   R    +     +SA A       +V +
Sbjct: 106 IIILDGIEDPHNLGAIIRTANQAGAHGIIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTN 165

Query: 76  ---NLKEAIA-DLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
               +KE     + F+ A    TT  + N    +                    G++ G 
Sbjct: 166 ISNTIKELKEKGMWFVCADMGGTTMYDLNLTGPI--------------------GLVIGN 205

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E  G++       +   S P+     SLN S A  ++ +E +   + S 
Sbjct: 206 EGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAYEIVRQRLKSG 254


>gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
 gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
          Length = 258

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 15/169 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             L    K  +++L D Q   N G + R      ++ + L        + K   ++  + 
Sbjct: 101 EDLLKEEKPLLMVLEDLQDPGNAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIRATMGSV 160

Query: 66  CVID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             I    V    +LK+ +             R      LA         +R         
Sbjct: 161 YRIPFFYVEDVVSLKQKLQG-----------RGIR--FLAAHLQGKNSYDRESYEDGTAF 207

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  GLT++    ++ +I  P+     SLN + A  ++++E     
Sbjct: 208 LIGNEGKGLTDQAADAADCLIRIPMCGQVESLNAAMAAGILMYEAARQR 256


>gi|42561144|ref|NP_975595.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492642|emb|CAE77237.1| rRNA Methylase (Spou-family) [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301321276|gb|ADK69919.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 181

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 19/167 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-SANADCVID 69
           + +   I+L +P++ +N+G + R     N  +L ++ P      ++  S  SAN    +D
Sbjct: 2   NKRKINIVLYEPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60

Query: 70  SVRVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +R + +  + I    ++         +R   K +           +      NV ++FG
Sbjct: 61  CIR-YDDWNDFITKHPNITLFCL----SRYGQKPISD--------FDFSKINDNVYLVFG 107

Query: 127 RERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +E  G+    +    N     P+     SLNI+  V +  +E +   
Sbjct: 108 KESTGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154


>gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 251

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 25/156 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVIDSVRVFSNLKEAI--- 81
           N+G + R      +  + L  P+ G  S  E    +SA A   +   +V  NL +AI   
Sbjct: 113 NVGAIIRTAECTGVNGILL--PKQGSASIGEDMVKTSAGAIFNLPLCKV-DNLIDAIYYL 169

Query: 82  --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             + +  + AT               E A  L       + + I+ G E  G++   + +
Sbjct: 170 QGSGIKVLGAT---------------EKASSLLYDFSLSEPLAIVMGAEDTGISKGVLKV 214

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +     P+     SLN+S A    ++E +   +++
Sbjct: 215 LDEKAKLPLQGETSSLNVSVACGAFLYEVVRQRLMN 250


>gi|325279827|ref|YP_004252369.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311636|gb|ADY32189.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 223

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------ 68
             ++L D     N   V R+   + +  + L+  R+ +  +   + S  A   +      
Sbjct: 34  VTVVLEDLFQSHNQSAVMRSADCYGIQHVHLIENRNSY--DMTSTVSQGARDWLSIHRHK 91

Query: 69  ---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              ++ +  + + +  A+ + I ATT            P    I +++       +   F
Sbjct: 92  ELENNTQ--ATIDQLRAEGYRILATT------------PHANDIFVDDIDLEKGKMAFFF 137

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  GL++  I  ++  +  P+     SLN+S    + ++     
Sbjct: 138 GTELTGLSDLVIGQADEFVKIPMYGFTESLNVSVCAAITMYSVTRR 183


>gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 268

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 21/159 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + R      +  + L        + K   SSA       S  V  + 
Sbjct: 115 VLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAG--EWFRSPLVVESD 172

Query: 78  KEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             A+     A      AT      +   +   +                 I+ G E  GL
Sbjct: 173 LSALVKKYQAQGVKAIATLPTATKSHWEIDFTR--------------PTLILLGNEGAGL 218

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +  AL++  +  P+     SLN++ A  ++++E    
Sbjct: 219 SPQLAALADETVKIPLFGGVESLNVAIATAVILYEARRQ 257


>gi|126642729|ref|YP_001085713.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 129

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 13/133 (9%)

Query: 43  LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
           + LV P      +K    +         ++++ N++  +ADL       A+   +   + 
Sbjct: 1   MHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNIELCLADLK------AKGVEHVFPLT 54

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS---NAIISFPVNPLFPSLNISQ 159
                       +   + V ++ G E  GL  E + L       I  P+     SLN+S 
Sbjct: 55  T---KGSATPHTVDLNRPVALLMGPETRGLP-EHVRLMFPQEQWIRLPMAENSRSLNLSN 110

Query: 160 AVLLMVWECMENS 172
           A  ++V+E     
Sbjct: 111 ATAVIVYEAWRQQ 123


>gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
           CaD3]
 gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
           CaD3]
          Length = 248

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           Q   ++ G E  GL  E +   + ++  P+     SLN+S    ++++E M   +V
Sbjct: 193 QPTALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLYEAMRQRLV 248


>gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
 gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
          Length = 261

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 22/155 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSAN--ADCVIDSVRVFSNLK 78
           Q   N+G + R+           ++P   D W  +  R+      A  +++S  +     
Sbjct: 125 QDPGNLGSILRSAAAAGC-DAVFMSPGCADAWSPKVLRAGMGGHFALSILESADL----- 178

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                     AT          +LA    A            +    G E  GL+ E + 
Sbjct: 179 -------LKVAT-----GFTGKILAASLHARKSLYDCNLRGKLAFAIGNEGAGLSPELLT 226

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +      P+     SLN + A  + ++E     +
Sbjct: 227 AAQQHFIIPMQGKIESLNAAAATAVCLFEASRQRL 261


>gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6]
 gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6]
          Length = 250

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 10/155 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  +NIG + R      +  + +   R    +    ++S+ A   +  V +  NL + IA
Sbjct: 106 QDPQNIGTLLRTAEVVGVHGVAIPGRRAAEITPAVVNASSGATEHL-RVVLVGNLAQTIA 164

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L          R     V    +      +       + ++ G E  GL        + 
Sbjct: 165 TLQ---------REGVWVVGLEDDEQAQDLDAADLNLPLALVVGAEGPGLARLVRERCDF 215

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++  P+     SLN S A  + ++         +E
Sbjct: 216 LVRLPMAGQIASLNASVAGSITLYNAWRQRKKVAE 250


>gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324
 gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324
          Length = 309

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +S    ++ L +     N+G + R++  F+   + +   R    +  A  +SA A   I 
Sbjct: 156 DSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R  +NL  A+     ++A      +    V+          + +     + ++ G E 
Sbjct: 216 VAR-ATNLTRALK----VWA------DQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEG 264

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+       + ++S P+     SLN S AV +++ E     
Sbjct: 265 KGLSRLVRHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQR 307


>gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
           sulfurreducens PCA]
 gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 245

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 11/161 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G +++L   Q   N+G + R+        + +   R    +      SA A   I   +
Sbjct: 95  PGLILVLDGIQDPHNLGALIRSAACAGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQ 154

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V +N+ +A+  L             F +      AA  L     +G NV I+ G E  G+
Sbjct: 155 V-TNVVQALETL---------KEEGFWAFGTADSAASSLYSHDLTG-NVVIVIGGEGEGV 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                   + +++ P+     SLN S A  ++++E +   +
Sbjct: 204 RPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLFEVVRQRL 244


>gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           proteolyticus MRP]
 gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           proteolyticus MRP]
          Length = 239

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 12/161 (7%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+++L+       N G + R+        + +   R    S     ++A A   +  V
Sbjct: 90  EAPLLVLLDGITDPRNFGAIVRSAEVLGAHGVVVEERRSAPLSAVVAKTAAGATAYLPVV 149

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +V  NL   I +L            N     A  EAA  L ER      V ++ G E  G
Sbjct: 150 QV-KNLPRFIEEL---------KDRNVWVYGAAGEAAQPL-ERTDLSGPVALVIGSEGDG 198

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L        + ++S PV     SLN S A  ++++E     
Sbjct: 199 LRRLVRERCDGLVSIPVRGQVQSLNASVAAGILIYEAARRR 239


>gi|329942536|ref|ZP_08291346.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Chlamydophila psittaci Cal10]
 gi|332287168|ref|YP_004422069.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
 gi|313847764|emb|CBY16754.1| 4.2.3 [Chlamydophila psittaci RD1]
 gi|325506488|gb|ADZ18126.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
 gi|328815446|gb|EGF85434.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Chlamydophila psittaci Cal10]
 gi|328914413|gb|AEB55246.1| spoU rRNA methylase family protein [Chlamydophila psittaci 6BC]
          Length = 265

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 14/154 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI 81
           +   N+G + R         + L +P     +     SS      +    ++S  L + +
Sbjct: 125 EKPGNVGAILRIADGVGADGVILCDPVVDVYNPNVIRSSLGTVFTLP---IWSATLDQVL 181

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                +             V +P+   +   E     Q + ++FG E+ GLT   +  + 
Sbjct: 182 Q----VIL----EEKWQAFVTSPRAKTMYFCE--NYNQPLVLVFGSEKDGLTASWLKGNF 231

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + IS P+     SLN+S AV  + +E +     +
Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAYEVIRQRWEA 265


>gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS223]
 gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS223]
          Length = 246

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 19/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           L N+ +  ++IL       N+G   R      +  + +  P+D      A     +  A 
Sbjct: 91  LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                       +          A T R         V    EA   L +    G ++ I
Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-SLAI 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G E  GL        +++IS P+     SLN+S A  + ++E +   
Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQR 244


>gi|56551848|ref|YP_162687.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761830|ref|ZP_04759916.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56543422|gb|AAV89576.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373744|gb|EER63304.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 152

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 14/157 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P +  N+G + R    F +  + ++ P     S++A   +      +D  ++  
Sbjct: 2   RIALFQPDIAGNVGTILRTAACFGVG-VDIIEPCGFAFSDRALKRAG-----MDYAKIAP 55

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                +    +    + R     + VL      I L E  F   ++ ++FG E  G  + 
Sbjct: 56  P----VRHNDWNSFLSTRPE---RRVLLTTAGDIPLPEMTFQPDDI-LLFGSESAGAPDF 107

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               ++  +  P+   F SLNI+ +  + + E +  +
Sbjct: 108 VHQAASHQVRIPLLADFRSLNIAVSAGIALAEALRQT 144


>gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
           trichosporium OB3b]
 gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
           trichosporium OB3b]
          Length = 270

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 15/170 (8%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            +  G V++L       N+G + R    F +  L + +      +     +++ A   ++
Sbjct: 114 ETKSGVVLVLDQVTDPHNVGAILRTAAAFAVDALVMTDRNSPELTGVLAKAASGA---LE 170

Query: 70  SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            V + S  NL  A+ +L            + + V+     A    E       + ++ G 
Sbjct: 171 HVLIVSVVNLARALQELS----------QSGRLVVGLDSEAPAPLEETRLQNPIALVLGA 220

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  GL        + +    +     SLN+S A  + +       I SSE
Sbjct: 221 EGKGLRRLTRERCDVLARLDMPGPIKSLNVSNACAVALTTLRLKGIASSE 270


>gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 306

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 21/171 (12%)

Query: 6   PQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSA 62
           P L++     GPV++L       NIG + R+          +V  R+      A + +++
Sbjct: 148 PALEDIVERPGPVLLLDQVTDPRNIGAILRSAAA-FGAAAVIVQDRNAPEETGALAKAAS 206

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  V+  VRV +    +    +   +                       +L+   F  +
Sbjct: 207 GALEVVPLVRVVNLSRTIDALKSHGMWTVGL--------------DAGGGILDGASFRQR 252

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            V ++ G E  GL        + I    ++    SLN+S A  + ++E   
Sbjct: 253 RVALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALYEMSR 303


>gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS185]
 gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS195]
 gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS183]
 gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           BA175]
 gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS185]
 gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS195]
 gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS183]
 gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           BA175]
 gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS678]
          Length = 246

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 19/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           L N+ +  ++IL       N+G   R      +  + +  P+D      A     +  A 
Sbjct: 91  LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                       +          A T R         V    EA   L +    G  + I
Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-PLAI 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G E  GL        +++IS P+     SLN+S A  + ++E +   
Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQR 244


>gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON]
 gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON]
          Length = 261

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 16/157 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76
           +L   Q   N+G + R       + +          + K   ++  +      + V+++ 
Sbjct: 115 VLDAVQDPGNVGTMIRTADAMGFSAVIAGRGTADQYNPKVLRAAMGSSF---HMPVYNDV 171

Query: 77  -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L EA+ +L               SVLA      +  +         II G E  G++++
Sbjct: 172 PLPEALTEL-----------MERVSVLAAVPRGGIDIDEAPLADRTAIIIGNEARGISDK 220

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  +   +S  +     SLN S A  ++++E     
Sbjct: 221 VMDNAAYTVSIGMPGRAESLNASIAAGIIMYEISRRW 257


>gi|324999431|ref|ZP_08120543.1| rRNA methylase [Pseudonocardia sp. P1]
          Length = 267

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 29/187 (15%)

Query: 2   TPYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPR---DGWPSEK 56
            P  P  +   +   ++LV    +   N+G + R      +  + +  P      + +  
Sbjct: 98  APGRPLDELELRPDALVLVAEGIEKPGNVGAMLRTAEACGVDAVVIATPDRAGTDFANPN 157

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTA------RNRNNFKSVLAPKEAAIV 110
              +S           VF+        +    A TA      R R     V  P  A   
Sbjct: 158 VVRASKG--------TVFA--------VPVASAPTAEVQEWLRRRGVRSVVTTP--AGTT 199

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              R        ++ G E  G+T   +A ++A +  P+     SLN S A  ++++E + 
Sbjct: 200 ELGRADLTGPTALVIGTEATGVTGPWLAGADATVVIPMRGTVNSLNASIAAAVVLFEAVR 259

Query: 171 NSIVSSE 177
               +S 
Sbjct: 260 QRSGTSA 266


>gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 255

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +     N+G + R         + L +      + K + +   +   I+ ++   +
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSSESADLYNPKTQRAMQGSQFHIELIKR--D 171

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AI D                   +  + +    +       + +I G E  G+++  
Sbjct: 172 LADAITDFQ---------DAAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSSTI 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +LS+  +  P+     SLN + A  +M++
Sbjct: 223 ASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 285

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 102 LAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
           L P E A+ L++ ++ G     + + ++ G E  GLT   +  ++     P++    SLN
Sbjct: 205 LTPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTERTMRRTDIRARIPMSAGTDSLN 264

Query: 157 ISQAVLLMVWECMENSIVSSE 177
           ++ A  + ++E     +   E
Sbjct: 265 VATAAAIALYERQRGRMPHGE 285


>gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           MED193]
 gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           MED193]
          Length = 263

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P +IL+       N+G + R+   F  +   ++  R    + +  + +  A   ++ 
Sbjct: 110 AEIPRVILLDRVTDPHNVGAILRSAEVFGAS--AVIGTR-HHSAPETGALAKTASGALER 166

Query: 71  VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125
                  NL + I +L           N    VL     A    E    G+    V ++ 
Sbjct: 167 QPYLRMRNLADTITELQ----------NMGYVVLGLDGEAEQTIESCLEGRRDLPVALVL 216

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  GL  +     + ++       F SLN+S A  + ++
Sbjct: 217 GAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAAIALY 257


>gi|194333759|ref|YP_002015619.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
           DSM 271]
 gi|194311577|gb|ACF45972.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
           DSM 271]
          Length = 216

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 63/171 (36%), Gaps = 16/171 (9%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+       +++ +     N+  + R   +  +  +  V+ R     ++  +  +     
Sbjct: 14  LEQRQPDLTVVMDNVNKPHNLAAIIRTCDSVGIETIHAVSNRPSIRKKQKTAGGSTRWVQ 73

Query: 68  IDSVRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           +       NL   +       + A  +    +F+S+   +                 I+ 
Sbjct: 74  LSLHESMENLANTLKSNGTRLLAAHYSSTSVDFRSIDYTR--------------PTAIVM 119

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E+ G +++ I+L +  I  P+  +  SLN+S A  ++++E     + + 
Sbjct: 120 GAEKLGPSSDTISLVDQAIHIPMQGMAESLNVSVAAAVILFEAQRQRLAAG 170


>gi|170751421|ref|YP_001757681.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657943|gb|ACB26998.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
          Length = 291

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 49/165 (29%), Gaps = 22/165 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-----NLKEAI 81
           N+G   R    F    + L          K+   SA A  +    R+        L E +
Sbjct: 136 NVGAAFRNAAAFGADAVLLDGATCDPLYRKSIRVSAGAALIQPFARLPDGQDWLRLAETL 195

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                         +      +P   A    +   +     +I G E  GL    +A + 
Sbjct: 196 --------------DLRPLAFSP--GASETLDARAAPPRALLILGTEGPGLDAATLARA- 238

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
             I  P+   F SLN++ A  + ++          E   +    P
Sbjct: 239 RPIRIPMAAGFDSLNVATAAGIALYTIARGQGRLGEPRARRGGEP 283


>gi|127514505|ref|YP_001095702.1| RNA methyltransferase [Shewanella loihica PV-4]
 gi|126639800|gb|ABO25443.1| RNA methyltransferase, TrmH family, group 2 [Shewanella loihica
           PV-4]
          Length = 154

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 43/171 (25%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I L +P++  N G + R   N    QL L+ P      EK    +       D  RV   
Sbjct: 4   IALYEPEIAPNTGNIIRLCANNGC-QLHLIEPLGFDLEEKKLRRA--GLDYSDLTRVTRH 60

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F +   A+A    +  TT  +R +              +E  F   +V ++FG E  G
Sbjct: 61  KDFESFLSAMAGKRIMACTTKGSRPH--------------SEIAFEKDDV-LLFGPETRG 105

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQA-----------VLLMVWECMEN 171
           L          I S P +     L I  A           V ++ +E    
Sbjct: 106 LP------MPIIESIPTSQR---LRIPMAASSRSLNLSNSVAIISYEAWRQ 147


>gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
           OL]
 gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
           OL]
          Length = 270

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++    Q   N+G + R    F    +          + K   ++  +   +  +R   
Sbjct: 126 VVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAE 185

Query: 76  N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L + + D  F              V  P     +   ++   +   ++ G E  G++
Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKVVPDKKFCVVIGNESEGVS 232

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    ++   I  P+     SLN + A  ++++E  + 
Sbjct: 233 DSFAKVAARKIKIPMAGKAESLNAAVAASVVLYELRKR 270


>gi|149199824|ref|ZP_01876854.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149137112|gb|EDM25535.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 168

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            +++L   +   N+G + R     N+  +         P  K   ++   D  + +   F
Sbjct: 19  VIVVLDRLRSAHNVGNIFRLADAANVEAVYTCGYTASPPHPKLEKTAMGTDEFV-NCEHF 77

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +  EA+         + +        +   ++AI ++E  FSG     +FG E  G+  
Sbjct: 78  DHSLEAVG--------SLKKNGYRVYAVDTIDSAIDVHEAQFSG-KCAFVFGNEALGIQQ 128

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           E +   +  I    +    S+N+S    +++++ 
Sbjct: 129 ETLEACDEYIRLNAHGRKNSINVSNCAAVVLFQA 162


>gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
 gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
          Length = 253

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 14/160 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+ ++    P + L   Q   N+G + R+   F    + L        + K   SSA A 
Sbjct: 99  PKEKDFGPFPWVYLDKIQDPGNLGTILRSSLAFGCGGIFLSEDSCNIYNPKVIRSSAGAF 158

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +   +   N  + + D+     T+ R  +      +P+                 ++F
Sbjct: 159 FKVPFRKR--NFSDIVRDMD----TSLRVFSF-----SPRAKEPFFLH--NYDGRCLLVF 205

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           G E  G+++E  + S   +  P      SLN++  V +++
Sbjct: 206 GNEGRGISSEIESKSYKRVYIPT-QNVESLNVAMCVNIVL 244


>gi|154174304|ref|YP_001407505.1| RNA methyltransferase [Campylobacter curvus 525.92]
 gi|112803838|gb|EAU01182.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter curvus
           525.92]
          Length = 226

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       NIG + R+ +      L +V        E    +S+ A   I         
Sbjct: 87  VLYGISDVGNIGAITRSAYALGCEGLIVVA--KSINMEGVLRASSGAAYEIPIALFEDGL 144

Query: 76  NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +L   +    F    TA N  N   +   PK                 +I G E  G+  
Sbjct: 145 SLLNELKQSGFCLYATASNGKNVHEMKFDPKR---------------ALIMGSESEGIPQ 189

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + +A  +  +   +   + SLN+S A  ++ 
Sbjct: 190 KALAKCDECVGIKLKEGWDSLNVSAAFAIIC 220


>gi|153873345|ref|ZP_02001957.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
 gi|152070192|gb|EDN68046.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
          Length = 141

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             +  +FG E  GL        + ++  P      SLN+S A  + ++E +   +
Sbjct: 77  GPLAFVFGSEGTGLRRLTKETCDILVRIPSLGKIKSLNVSVATGICLYEAVRQRL 131


>gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501]
 gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501]
          Length = 237

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 26/153 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVF-SNLKEAIA 82
             N+G + R    F + +L L +P      + K   ++  +   I  VRV   +L E + 
Sbjct: 104 PGNLGTLIRLCDWFGIGEL-LCSPDTVDCYNPKVLQATMGS---IARVRVVYKDLAETLD 159

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERWGLTNEEIAL 139
                                P   A +  E I   Q +    ++ G E  GL+      
Sbjct: 160 ASGL-----------------PVYGASMEGEAIGGEQPLSPGILVMGSESHGLSGPVRDR 202

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +   + P      SLN++ A  ++++E    +
Sbjct: 203 LSQTWAIPSFGRAESLNVATAAAILLYEIRRAT 235


>gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1]
          Length = 285

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 54/172 (31%), Gaps = 27/172 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FS 75
           +L +     N+G + R+     +    L+ P    P   +A   S      I    + F 
Sbjct: 124 VLEEVMNPTNVGAIFRSAAALGM-DAVLLTPGCSDPLYRRAARVSMGTVFQIPWTYITFD 182

Query: 76  NLKEAIADLHFIY---------------ATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            L  A                         +   RN+   +  P+         +     
Sbjct: 183 TLGLAHNKADHGIWPEFGMGQLHSMGFRTASMALRNDTIDIHDPE---------LKQIDR 233

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + +I G E  GL  E I  S+  +  P+     SLN++ A  +  WE    S
Sbjct: 234 LAVILGTEGEGLKTETIDSSDYTVKIPMYHGVDSLNVAAASAVAFWELGRRS 285


>gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
 gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 240

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 23/150 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIADL 84
           NIG + R+   F++  + L  P+D  P+E      ++     +I  ++V +NL+  +  L
Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNENGSIAKAACGTLELIPIIKV-TNLRSCMNYL 164

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +I   T    + F              +++ S + V ++FG E  G+        
Sbjct: 165 KKHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRRLVAETC 210

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + +   P++    SLN+S A  ++     +
Sbjct: 211 DYLAKIPISQRVESLNVSNAASILFHSLHK 240


>gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. ATCC 3502]
 gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
 gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
 gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           NCTC 2916]
 gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
 gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A2 str. Kyoto]
 gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. ATCC 19397]
 gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. Hall]
 gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A3 str. Loch Maree]
 gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           NCTC 2916]
 gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A2 str. Kyoto]
          Length = 257

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL + +   N G + R         + +   R+   +     +SA A   +   +V +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTN 167

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                   ++ +     + +     +             +     + ++ G E  G++  
Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + ++  P+     SLN S A  ++++E ++  + S 
Sbjct: 217 TKNKCDVLVKIPMLGNITSLNASVAGGMLMYEILKQRMKSK 257


>gi|145219563|ref|YP_001130272.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205727|gb|ABP36770.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
           265]
          Length = 178

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           +   + K PVI +L + +   N+G + R+     + ++ L       P ++   ++  AD
Sbjct: 17  EYAAAPKHPVILMLHNIRSMWNVGSMFRSADAAGIEKIILSGYTATPPRKEITKTALGAD 76

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +       N ++ + DL        +        L   E + +  E       V ++ 
Sbjct: 77  ASMPW-EYTDNPQQTLRDL--------KKSGVRICGLEIAEGSRLYTEMKAQDFPVCLLV 127

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+ +  +A  + ++  P   +  SLN+S A  ++++E + 
Sbjct: 128 GNEVQGIEDNLLAQCDLVLEIPQFGIKHSLNVSVAAGVVLFELVR 172


>gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 240

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 23/150 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRVFSNLKEAIADL 84
           NIG + R+   F++  + L  P+D  P+E      ++     +I  ++V +NL+  +  L
Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNENGSIAKAACGTLELIPIIKV-TNLRSCMNYL 164

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +I   T    + F              +++ S + V ++FG E  G+        
Sbjct: 165 KKHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRRLVAETC 210

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + +   P++    SLN+S A  ++     +
Sbjct: 211 DYLAKIPISQRVESLNVSNAASILFHSLHK 240


>gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 251

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL   Q   NIG + R   +F++  +          S K   ++  +   ++ V++  
Sbjct: 112 ILILDRIQDPGNIGTIIRTAESFSINTIFYSKGTADVFSPKVVRATMGSIYFVNFVKL-D 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++ +  ++ + IYA+   N               + ++  F+ + + +I G E  G++ +
Sbjct: 171 DISKLKSEGYKIYASCLEN--------------AISSKSAFTDEKMALILGNESVGISED 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I  S+  I   +     SLN++ A  ++++E  +
Sbjct: 217 LINQSDKKIKIDMTGNAQSLNVATAGAILIYEMCK 251


>gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 262

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 13/156 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L + Q   N+G + R      +T + +        + K   S+  +   +  V    +L
Sbjct: 115 VLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFV-YVEDL 173

Query: 78  KEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           KEAIA +      T A + +   S            ++    +    + G E  GL  + 
Sbjct: 174 KEAIAKVKAHGIFTYAAHLDGKNSY-----------DKEDYTKKTAFLIGNEGNGLRKDI 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             L++  I  P+     SLN + A  ++++E     
Sbjct: 223 ADLADTWIRIPMQGQVESLNAAIATSVLMFETARQR 258


>gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
           HTCC2501]
 gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
           HTCC2501]
          Length = 244

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N+G + R      ++ L L        S     +SA A   +   R   +LK+ +     
Sbjct: 109 NLGAIIRTAECAGVSGLFLPASGSAPVSADTIKTSAGAAFNLPIARS-PHLKDVVYYLQA 167

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + +  + AT               E A            + +I G E  G+    + L +
Sbjct: 168 SGVRLVAAT---------------EKAESTLYEADLTGPLALIMGSEDRGIHPSLLKLCD 212

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                P+     SLN+S A  + ++E     
Sbjct: 213 IQAQLPMQGSIESLNVSVACGVFLFEAQRQR 243


>gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
           2912]
 gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
           2912]
          Length = 268

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 11/164 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             G  ++L   +   N+G + R      +  + +   R    +E    +SA A   +  +
Sbjct: 116 RPGLFVLLDGIEDPHNLGSILRTAEACAVDGVVVPKRRAAAVNETVVKASAGAAEFVPVI 175

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           RV  NL + I          A  R+ ++ V+            +       ++ G E  G
Sbjct: 176 RV-GNLGQTIL---------ALKRSGYR-VVGADTEGECDYTDVDYRVPTALVIGGEGKG 224

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           L        + ++  P+     SLN   A  ++++E +      
Sbjct: 225 LGRLVRERCDEVVHIPMAGRVNSLNAGVAAGVLLYEAIRQRSAP 268


>gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC
           25840]
          Length = 303

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 142 RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH     T   +        P E  + L     SG  + 
Sbjct: 202 GALELIAHIEV-RNLAEAIEELH-----TLGFQTIGLDSQGPLEMEVTL-----SGNRIA 250

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294


>gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 308

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 102 LAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
           L P E A+ L++ ++ G     + + ++ G E  GLT   +  ++     P++    SLN
Sbjct: 228 LTPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTERTMRRTDIRARIPMSAGTDSLN 287

Query: 157 ISQAVLLMVWECMENSIVSSE 177
           ++ A  + ++E     +   E
Sbjct: 288 VATAAAIALYERQRGRMPHGE 308


>gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
 gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
          Length = 284

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 18/165 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADC--V 67
              G  +IL   Q   N+G + R+     +    +  P    P + K   ++  A     
Sbjct: 132 PQPGLGLILDAIQDPGNLGTLLRSAEAAGVG-WVVCAPGCADPFAPKVVRAAMGAHFNLP 190

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +     + ++   +ADL  +Y               P   A          Q   +I G 
Sbjct: 191 LRHDLSWEDIGAEVADLPVVY-------AAAADAAMPYYQAD-------WNQPAALIIGS 236

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL+   +AL+   ++ P+     SLN + A  +M++E +   
Sbjct: 237 EAHGLSAAGMALATQYLAIPMQGRAESLNAAVAGSVMLFEALRQR 281


>gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 272

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 19/172 (11%)

Query: 7   QLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           QL      P  ++ +  +   N+G + R+     +  L + +      +     +S    
Sbjct: 115 QLPTPDGSPFYVVAEAIEKPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVGTL 174

Query: 65  --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
               V++       LK                +    SVLA    A  L   +     + 
Sbjct: 175 FTVPVLE-AEGEETLK--------------WLKERSISVLAATPHARSLYTEVEMTGPLA 219

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           I+ G E+ GL+   +  ++  +  P+  +  SLN++ A  L+++E +    +
Sbjct: 220 IVVGTEQLGLSELWMEHADIQVRIPMMGVADSLNVATATTLLLYEAIRQRAL 271


>gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           denitrificans OS217]
 gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans
           OS217]
          Length = 246

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 20/172 (11%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
            L +S + P ++IL       N+G   R      +  + +  P+D     +      +  
Sbjct: 89  ALLDSTEVPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSAGLTPTVSKVACG 146

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           A             +          A T R         V    EA   L +   +G  +
Sbjct: 147 A------AETVPLFQ------VTNLARTMRHLQDRGVWIVGTAGEADGALYQAELTG-PL 193

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            I  G E  GL        + ++S P+     SLN+S A  + ++E +   I
Sbjct: 194 AIAMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLFEAVRQRI 245


>gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 383

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 14/151 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+  +F +    LV       S  A  ++   A+ V        +    + +
Sbjct: 246 PHNLGGIMRSCAHFGVKG-VLVQDAALLESGAAVRTAEGGAEHV--KAINADDFLSVLTE 302

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                      RN   +++           +        I+ G+E  GL++      +  
Sbjct: 303 F----------RNAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVK 352

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +S        SLNIS A  +++ E    +  
Sbjct: 353 VSIGGTGKVESLNISVATGILLSEWWRQNQA 383


>gi|218510308|ref|ZP_03508186.1| rRNA methylase protein [Rhizobium etli Brasil 5]
          Length = 218

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +   R  + 
Sbjct: 68  VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 125

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E +A      +  + AT      +++++   K             + V ++ G E+ G
Sbjct: 126 PEEFLAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 171

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  +    ++A+   P      SLN++ A  +M++E   + +  +E
Sbjct: 172 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 217


>gi|227501411|ref|ZP_03931460.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|306835564|ref|ZP_07468577.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
 gi|227077436|gb|EEI15399.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|304568564|gb|EFM44116.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 25/156 (16%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK------- 78
           ENIG + R     N+  + L +        ++   S     V+     F++L+       
Sbjct: 122 ENIGAIFRHAAGMNVDAVLLGSGAADPLYRRSVRVSMG--HVLR--VPFAHLEGGFTTWQ 177

Query: 79  ---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              +A+AD  F               L P   A+ L E +     V ++ G E  GLT  
Sbjct: 178 RSLQALADASFTL-----------ISLTPNPQAVHLAEAMHGQDKVAMLVGAEGPGLTEH 226

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  ++     P+ P   SLN++ A  +  +E   +
Sbjct: 227 AMKATDIRARIPMAPGTDSLNVATAAAISFYERQRS 262


>gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 270

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+I  + Q   N+G + R    F    +          + K   ++  +   +  +R   
Sbjct: 126 VVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTTRATMGSLFHLQIMREAE 185

Query: 76  N--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L + + D  F              V  P     +   +I   +   I+ G E  G++
Sbjct: 186 EGKLIKILKDNSFAV-----------YVATP--YGDIEISKIVPDKRFCIVIGNESEGVS 232

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +    ++   I  P+     SLN + A  ++++E  + 
Sbjct: 233 DSFAKVATRKIKIPMVGKTESLNAAVAASIVLYELRKR 270


>gi|124023764|ref|YP_001018071.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
 gi|123964050|gb|ABM78806.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 229

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 21/174 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+  + R+     + +   VN     P+    S++  +   I  ++  S+++ A+ 
Sbjct: 30  EKPHNLSAILRSCDAVGVLEAHAVNYSGRLPTFN--STAQGSQKWIP-LKEHSSIEVAVK 86

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            +      +Y T     +   +    ++            +    + G E+WGL+     
Sbjct: 87  AIKESGFRLYGT-----HLGGNARDYRDCDFC--------EPTAFVLGAEKWGLSELATP 133

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTPATKGE 191
           L +  I  P+  +  SLN+S A   +++E   +  +        E   PA   +
Sbjct: 134 LMDEGIFIPMCGMVQSLNVSVAAATLLFEALRQRRLAGIAPQAGEGLEPALYQQ 187


>gi|42522737|ref|NP_968117.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
 gi|39573933|emb|CAE79110.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
          Length = 238

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 12/170 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L       NI  V R+          ++  ++ +  ++A   +  AD  ++  +   
Sbjct: 49  AVVLEGIYDRGNISAVMRSAEGLGFGNFHVIETQEKF--KEANRVTQGADKWVEVKKWKK 106

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                 AD         +N+     V      A  L+E  FSG    ++ G ER G+T E
Sbjct: 107 T-----ADCVKAL----KNQGYKIYVTHLDANAKPLHEIDFSG-KTALVLGNERDGVTPE 156

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
            IA ++  I  P+     S NIS A  L ++   ++ +     N      
Sbjct: 157 MIAAADQTIIIPMTGFVQSFNISVAGALGLYHISQDRLKRRGTNASLTEE 206


>gi|262091753|gb|ACY25342.1| rRNA methylase [uncultured actinobacterium]
          Length = 196

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEA 80
               N+G + R+      + + L        + K   SSA +   I    VF    + E 
Sbjct: 57  SDPGNLGTIFRSAEAAGASGVVLTPGTVEAFNSKVVRSSAGSMFYIP---VFEDITIDEV 113

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 I  T++  +   +                     + I+ G E  G+ + E+   
Sbjct: 114 KQAGFSIVGTSSHEQRGSRPF-----------TEASLTGKIAIVVGNEAHGMDDAELV-- 160

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  I+ P      SLN++ A  ++ +E     
Sbjct: 161 DQWITIPHRGRSESLNVAMAATVVCFEVAHQR 192


>gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           putrefaciens 200]
          Length = 246

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 19/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           L N+ +  ++IL       N+G   R      +  + +  P+D      A     +  A 
Sbjct: 91  LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                       +          A T R         V    EA   L +    G  + I
Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-PLAI 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G E  GL        +++IS P+     SLN+S A  + ++E +   
Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8]
 gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 242

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 15/173 (8%)

Query: 2   TPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
                ++  +   P+I+L+D  Q   N+G + R         + +  P+D          
Sbjct: 77  YSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIII--PKDKSVKVTETVV 134

Query: 61  SANADCVI-DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             +A  V    + V +NL   I +L               +  +       + E  F+  
Sbjct: 135 KVSAGTVFRARIAVVTNLARTIEEL---------KEKGVWTYAS-DIDGTPIYEEDFT-F 183

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               +FG E  G+        + +++ P+     SLN+S +V ++++E +   
Sbjct: 184 PTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236


>gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp.
           W3-18-1]
 gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           putrefaciens CN-32]
 gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp.
           W3-18-1]
 gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           putrefaciens CN-32]
          Length = 246

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 19/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           L N+ +  ++IL       N+G   R      +  + +  P+D      A     +  A 
Sbjct: 91  LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                       +          A T R         V    EA   L +    G  + I
Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-PLAI 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G E  GL        +++IS P+     SLN+S A  + ++E +   
Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 248

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 13  KGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P+I IL       N G + R      ++ + +   R    +     +S  A   +   
Sbjct: 99  ENPLILILDGLTDPHNFGSILRTADATKVSGVIIPKHRAVGVTPVVAKTSTGAVEHVPIA 158

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           RV +NL +A+  L     +I+ T                    + +   SG  + +I G 
Sbjct: 159 RV-TNLSQALDKLKEAGFWIFGT--------------DMDGTPVQKWNTSG-KLALIIGS 202

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E  G++       + +I+ P+     SLN   A  ++++E   + +
Sbjct: 203 EGKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFRHKL 248


>gi|226887998|pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
           S-Adenosyl-L-Methionine Complex
 gi|226887999|pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
           S-Adenosyl-L-Methionine Complex
          Length = 272

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S +G V++L   ++  NIG + R       + + LV+      +++    ++    V   
Sbjct: 116 SRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRG-YVFSL 174

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRER 129
             V S  +EAIA +          R++   ++  K    +  + +      + ++FG E+
Sbjct: 175 PVVLSGREEAIAFI----------RDSGMQLMTLKADGDISVKELGDNPDRLALLFGSEK 224

Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G ++  EE + ++  +S P+     SLN+S ++ + + E
Sbjct: 225 GGPSDLFEEASSAS--VSIPMMSQTESLNVSVSLGIALHE 262


>gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS155]
 gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS155]
          Length = 246

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 19/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           L N+ +  ++IL       N+G   R      +  + +  P+D      A     +  A 
Sbjct: 91  LANTEQPFLLILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTATVSKVACGA- 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                       +          A T R         V    EA   L +    G  + I
Sbjct: 148 -----AETVPLFQ------VTNLARTMRHLQDKGVWIVGTAGEADCELYQADLKG-PLAI 195

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G E  GL        +++IS P+     SLN+S A  + ++E +   
Sbjct: 196 AMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQR 244


>gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           australis ATCC 700641]
 gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           australis ATCC 700641]
          Length = 242

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 18/170 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q+ N     ++IL       N+G + R      +  + +   R    +     +S  A  
Sbjct: 88  QVANQDNPLLLILDGLTDPHNLGSILRTADATQVAGVIIPKHRAVGVTPVVAKTSTGAVE 147

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +      +I+ T                     ++   SG  + +
Sbjct: 148 HVPIARVTNLSQTLDKLKEAGFWIFGT--------------DMNGTPSHKWNTSG-KLAL 192

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G++       + +I+ P+     SLN S A  ++++E   N +
Sbjct: 193 IIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMYEVFRNKL 242


>gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 283

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 19/137 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSNLK---EA 80
           EN+G + R      +  + L  P    P      R S  +   V  +     +     + 
Sbjct: 149 ENLGALFRNAAALGIDGVVL-GPGCSDPLYRRSVRVSMGHVLRVPFAA--VDDWPGGLKL 205

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           + D  F+ A            L P+  ++ L +    G+ V ++ G E  GLT E I  +
Sbjct: 206 LQDKGFVVAA-----------LTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAA 254

Query: 141 NAIISFPVNPLFPSLNI 157
           +  +  P++P   SLN+
Sbjct: 255 DVAVRIPMSPGVDSLNV 271


>gi|195941791|ref|ZP_03087173.1| spoU protein (spoU) [Borrelia burgdorferi 80a]
          Length = 218

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     + I FG E  GL+ E +  ++  +  P+     S NIS AV ++++  +  
Sbjct: 121 ENLTINNKMAIFFGAELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMR 179


>gi|195173298|ref|XP_002027429.1| GL20885 [Drosophila persimilis]
 gi|194113281|gb|EDW35324.1| GL20885 [Drosophila persimilis]
          Length = 405

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 26/183 (14%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
              +L +      ++  + +   N+G + R       +Q+ +          KA      
Sbjct: 228 EQERLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCG 287

Query: 64  ADCVIDSVRVFSNL----------KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
                  V +  ++           +A  D H   A + + +   +  +   + A +   
Sbjct: 288 GQF---RVPIRDDVSWEELSMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQI--- 341

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWE 167
               G +  +I G E  G++ E  +  N        +  P+     SLN++ A+ L+++E
Sbjct: 342 ----GTHNLLIIGGESHGVSEEAYSFMNLVGGKGKCVYIPLAAGIDSLNVASALTLLLFE 397

Query: 168 CME 170
              
Sbjct: 398 LRR 400


>gi|313836782|gb|EFS74496.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314929810|gb|EFS93641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314972239|gb|EFT16336.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
 gi|328907668|gb|EGG27432.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08]
          Length = 279

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 21/153 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R           L+ PR   P   +A  +S      +   R+      L E + 
Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDE-LR 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRERWGLTNEEIA 138
           D  F  A            +AP + A+ L+E         + + ++ G E  GL+   I+
Sbjct: 189 DHGFTVAA-----------MAPSDGAVTLDEFSADLRQNPRKIALLMGTEGAGLSAHWIS 237

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ ++  P+     SLN++ A  +  +E  E 
Sbjct: 238 QADVVVRIPMAGGVDSLNVAAAAAVACYELREA 270


>gi|313205776|ref|YP_004044953.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445092|gb|ADQ81447.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
          Length = 228

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 94  NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153
            R      ++P+  A +L +     + + ++FG E  G+++E +  ++  ++ P+     
Sbjct: 110 ERGYKIVAVSPENNATMLPDYKVE-KPIALVFGTEWEGVSDELLDFADETLAIPMYGFTK 168

Query: 154 SLNISQAVLLMVWECMENSIVSS 176
           S N+S A  + ++E  +  + S+
Sbjct: 169 SFNVSVAAAICMYELKQKLLNST 191


>gi|197104628|ref|YP_002130005.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196478048|gb|ACG77576.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 235

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 12/142 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R    F    + L          KA   S  A   +   R+     EA  DL  
Sbjct: 100 NIGGIFRNAAAFGAHAVILDAACCDPLYRKAIRVSVGAALTMPFARL-----EAGEDLVG 154

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
             A           VLA   A       +     V  +FG E  GL ++ +A     +  
Sbjct: 155 ALA------GAGLEVLALSPAGETDLADLAPPARVAALFGAEGPGLPDDVLAR-TRTVRI 207

Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
           P+   F SLN++    +++   
Sbjct: 208 PMAGGFDSLNVATTSGIVLHHL 229


>gi|37525241|ref|NP_928585.1| putative methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784668|emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 338

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R+  +F +  + L +          R++   A+ +  ID+  + + L     
Sbjct: 200 PHNLGGIMRSCAHFGVQGVILQDVALLESGAAIRTAEGGAEHIKGIDADSLVTTLNNFRK 259

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I  T++                     +    + + ++ G+ER GL++      + 
Sbjct: 260 AGYTIVTTSS-------------HKGSTALAKAELPEKMVLVLGQERDGLSDSAWEHGDM 306

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +    + L  SLN+S A  +M+ E    
Sbjct: 307 SLFVGGSGLVESLNVSVATGIMLAEWWRQ 335


>gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN]
 gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923]
 gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae]
 gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923]
          Length = 278

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +S    ++ L +     N+G + R++  F+   + +   R    +  A  +SA A   I 
Sbjct: 125 DSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIP 184

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R  +NL  A+     ++A      +    V+          + +     + ++ G E 
Sbjct: 185 VAR-ATNLTRALK----VWA------DQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEG 233

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+       + ++S P+     SLN S AV +++ E     
Sbjct: 234 KGLSRLVRHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQR 276


>gi|261337660|ref|ZP_05965544.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM
           20093]
 gi|270277098|gb|EFA22952.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM
           20093]
          Length = 222

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 21/157 (13%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 74  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLKDTKLRRA--GLDYHDMAHVVLHPNFE 130

Query: 76  NLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +L E++ D   I A TA     +  V   P +  +   E         I+FG        
Sbjct: 131 SLVESMPD-SRIIAFTAHATKLYTEVEYRPNDILLFGPEPGNIPDPTDIMFGPHVA---- 185

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                    +  P+ P   SLN++    + ++E    
Sbjct: 186 -------EQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 215


>gi|37520123|ref|NP_923500.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35211115|dbj|BAC88495.1| gll0554 [Gloeobacter violaceus PCC 7421]
          Length = 265

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 13/156 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+        L L          K   +SA             +L   +A
Sbjct: 122 QDPGNVGTLVRSCAAVGADGLVLSADSVDPDHPKVLRASAGLWFR-SPPLSVPDLTACVA 180

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS-N 141
           DL          R     VLA    A          +    + G E  GL+ E +     
Sbjct: 181 DLVR--------RGVQ--VLAADAGAGRSLWECDLRRPTAFVLGSEGQGLS-EPLRRCLP 229

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +  P+ P   SLN++ +  L+++E       SS 
Sbjct: 230 ERVGIPLAPGVESLNVAVSGALLLFEAARQRRGSSH 265


>gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
           DSM 2876]
 gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
           DSM 2876]
          Length = 245

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 20/162 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           V IL   +   N+G + R         + +   R    +     +SA A       +V  
Sbjct: 100 VFILDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTN 159

Query: 75  --SNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + ++E     L F+ A                +        +     +G++ G E  G
Sbjct: 160 LSATIEELKKEGLWFVCA----------------DMGGETMYNLNLTGPIGLVIGNEGEG 203

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++       + + S P+     SLN S A  ++ +E +   +
Sbjct: 204 VSRLVKEKCDYVASIPMKGNIDSLNASVAAGVLAYEIVRQRM 245


>gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
           intermedium LMG 3301]
          Length = 303

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A +L      P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 142 RARKLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 201

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 202 GALELISHIEV-RNLAEAIEELHSLGFQTIGLDS----------EGPLEMEATLSGGRIA 250

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 251 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 294


>gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
 gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
 gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
          Length = 329

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 22/166 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDS 70
              +I L       N+G + RA   F+     +V P  R    +  A  +SA A   +  
Sbjct: 176 PPLLIALDGITDPRNLGAIIRAGSAFD-ADGVIV-PERRSVGVTATAWRTSAGAAARVPV 233

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +   NL   + DLH    F+        +    V  P            + + + ++ G
Sbjct: 234 AQ-AGNLNTTLVDLHKAGYFVLGL-----DGGGDVCLP--------GLALATEPLVLVVG 279

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GL+         I+S P++    SLN S AV + ++E     
Sbjct: 280 AEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQR 325


>gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           AS9601]
 gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           AS9601]
          Length = 335

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 19/163 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N A   ++ L       N+G + R+   F+   + +   R    +      +A A   + 
Sbjct: 185 NCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHVQ 244

Query: 70  SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             RV  NL  A+ +L      +   +                  +          + +I 
Sbjct: 245 VSRVV-NLNRALEELKKNGFIVVGLSG--------------DGQLSISNFLEKAPLVVIV 289

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           G E  G++       + ++S P+     SLN S A  + ++  
Sbjct: 290 GSEEKGISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLFHL 332


>gi|13507481|gb|AAK28596.1|AF349097_2 hypothetical protein [uncultured bacterium]
          Length = 207

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 71/178 (39%), Gaps = 21/178 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSANADC 66
           K  + ++ +P+   NIG + R +    + +  +++ +   P       EK++ ++ +A  
Sbjct: 24  KNLIAVIENPEDIRNIGTIIRNVNALGVEKAYVISSKATLPDNWQDMREKSKLNAISASA 83

Query: 67  V-IDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           V    V+ F + +  +          +  T+   +     VL   +              
Sbjct: 84  VKWSFVKKFKDSESCLDHLEKNGFVSVV-TSPHTKGRKNVVLHEADYTKYT--------K 134

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + + FG E  G++   +  S   ++ P+  +  SLN+  +  ++++E  +   +  +K
Sbjct: 135 LAVWFGTEGTGISQVALERSELCVNIPMVGIVESLNLGTSSGIVLYEITKQRRIFQDK 192


>gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi
           DSS-3]
          Length = 257

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P +IL+       N+G + R+      +   ++  R    + +  + +  A   ++ 
Sbjct: 105 AENPRVILLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 161

Query: 71  VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIF 125
                  NL +AI +L                VL     A    E   +GQ    V ++ 
Sbjct: 162 QPYLRMRNLADAITELQ----------GMGYLVLGLDGEASETIEAALAGQTDRPVALVL 211

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  GL  +     + ++       F SLN+S A  + ++
Sbjct: 212 GAEGPGLRQKTKETVDKLVKIDAAGGFGSLNVSNAAAIALY 252


>gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
 gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus
           denitrificans PD1222]
          Length = 265

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 16/156 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA- 64
            L    +  ++ L       N+G + R+   F   +  +   R   P   A + +++ A 
Sbjct: 109 ALSGPGRPLLVALDRVTDPHNVGAILRSAEVFG-ARAVIAPARHSAPETGALAKTASGAL 167

Query: 65  --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
                +    +   L E  +  + +              L           R  SG+ + 
Sbjct: 168 ERQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELLPEAL-----------RDLSGRAIC 216

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           ++ G E  GL        + I+  P    F SLN+S
Sbjct: 217 LVLGAEGPGLRERTRETCDRILRIPFAADFGSLNVS 252


>gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 269

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    + G E  GL+      ++ +I  P+     SLN + A  ++++E     
Sbjct: 213 KGTAFLIGNEGNGLSEHLTERADTLIKIPMQGKVESLNAAMASGILMYEAYRQR 266


>gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003]
 gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus
           SB 1003]
          Length = 264

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 20/158 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L  +    V++L       N+G + R+   F      +V P     + +  + +  A  
Sbjct: 104 ALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGAR--AVVAP-ARHSAPETGALAKTASG 160

Query: 67  VIDSVRV--FSNLKEA---IADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            ++       +NL EA   + D+ ++               +   E    +  R      
Sbjct: 161 ALERQPYLRVTNLSEAMGALRDMGYVLIGLAGEAE------MTLAEGLAEVGTR-----P 209

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           V I+ G E  GL  +  A  + ++  P    F SLN+S
Sbjct: 210 VAIVLGAEGPGLREKTRATCDHLVRIPFAGAFGSLNVS 247


>gi|238918595|ref|YP_002932109.1| methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868163|gb|ACR67874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 357

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 19/151 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCV--IDSVRVFSNLKEA 80
             N+G + R   +F +    ++ P        A  R++   A+ V  ID+    + L   
Sbjct: 219 PHNLGGIMRTCAHFGIRG--IIAPESAALESGAAVRTAEGGAEHVQAIDAEDFSATLDTF 276

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
               + I  T++                     R      + ++ G E  GL++  +   
Sbjct: 277 RRAGYTIVTTSSHKGTTQLH-------------RAVLPAKIVLVVGHEGDGLSDGTLQQG 323

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  IS        SLN+S A  +M+ E    
Sbjct: 324 DLSISIGGTGSVESLNVSVATGIMLAEWWRQ 354


>gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
           19977]
 gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572
 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 315

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A     +    ++ L +     N+G + R++  F    + +   R    +  A  +SA A
Sbjct: 158 ARARAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGA 217

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +   R  +NL   + D            +   +++          + +    ++ ++
Sbjct: 218 AARLPVAR-ATNLTRTLKDWQ----------DKGITIVGLDAGGDTELDNLDGVGDIAVV 266

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL+       +A++S P+     SLN S A  +++ E     
Sbjct: 267 VGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQR 314


>gi|26553462|ref|NP_757396.1| rRNA methylase [Mycoplasma penetrans HF-2]
 gi|26453468|dbj|BAC43800.1| rRNA methylase [Mycoplasma penetrans HF-2]
          Length = 161

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 20/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L  P++ EN G ++R    FN T L ++ P     ++K    +       D ++    
Sbjct: 4   IVLFQPEIPENTGNISRTCVGFNAT-LHMIRPFGFILNDKRMKRA--GLDYWDHLKRKEY 60

Query: 74  --FSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +S+ +    +     ++  T           A K  + +  + +   + +  +FGRE 
Sbjct: 61  DDWSDFESQNLVNKNSKVFLITK---------FADKSISNLTKDELTKDEEIFFVFGRET 111

Query: 130 WGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
            GLT+E +       +   +N    S N+S +V ++ +
Sbjct: 112 KGLTSEIMEKYKKFQLKIEMNSNIRSFNLSNSVAIVAF 149


>gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
 gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
 gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 258

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 20/163 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L   +   N+G + R         + +   R    +     +SA A       +V   
Sbjct: 112 IVLDGIEDPHNLGAIIRTANIAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 171

Query: 74  FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++E     + F+ A                     + +   +G  +G++ G E  G+
Sbjct: 172 VKTMEELKEKGIWFVCA---------------DMDGQSMYDMNLTG-PIGLVVGNEGDGV 215

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +       + + S P+     SLN S A  ++ +E +   +  
Sbjct: 216 SRLVKENCDFVASIPMKGEITSLNASVAGGVLAYEIVRQRLAK 258


>gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
           LMG 20546]
 gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
           LMG 20546]
          Length = 245

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 27/165 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D   +  A     +  A  ++  VRV +
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDRSANITATVSKVACGAAEMVPLVRVTN 157

Query: 76  ------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                  L+E    + +   T                 A     +      + I+ G E 
Sbjct: 158 LARTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEG 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+        + +I  P+     SLN+S A  + ++E +   + 
Sbjct: 201 DGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGICLFEAVRQRLA 245


>gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
           27755]
 gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
           27755]
          Length = 264

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 13/156 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + R      +T + +        + K   S+  A   +       +L
Sbjct: 120 VLDQIQDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFC-YVDDL 178

Query: 78  KEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            E +  +      T A +     S                  +    + G E  GL +E 
Sbjct: 179 AEEVKQMKEAGICTYAAHLEGKNSYDEEDYR-----------KASAFLIGNEGNGLRDEV 227

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +   I  P+     SLN + A  ++ +E     
Sbjct: 228 ADQAQVYIRIPMKGQVESLNAAVATAILTFEAARQR 263


>gi|298208939|ref|YP_003717118.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
 gi|83848866|gb|EAP86735.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
          Length = 238

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F +  + ++  ++    ++  +  A     I+    + +++++I    
Sbjct: 57  HNTSAVIRSCDVFGVQNVHIIEEQNAKKIDREIAMGAQKWVTINR---YHSVQDSIK--- 110

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                + + +       +P   +  L +   + +   I FG E+ GL+ E +  +++ I 
Sbjct: 111 -----SLKEKGYQIVATSPHIESHNLRDFDVT-KPSAIFFGTEKDGLSEEVLNQADSYIK 164

Query: 146 FPVNPLFPSLNISQAVLLMV 165
            P+     SLNIS +  +++
Sbjct: 165 IPMVGFTESLNISVSAAIIL 184


>gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex]
          Length = 250

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 13/149 (8%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SSSANADCV 67
           ++ A   ++IL      +N+G + R+   F      L+  R   P E     S++ A   
Sbjct: 100 RSPAAKRLVILDQITDPQNVGAILRSACAFGFDG-VLMTERHSPPLEGVVGKSASGA--- 155

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++ + +      A   L  +          F      +E  + L++    G ++ ++ G 
Sbjct: 156 LEKIPLLMTANVA-QGLRLL------KTEGFWCWGLSEEGTLPLSQLPCEG-SLALVLGA 207

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLN 156
           E  GL      L + ++  P +P FP+LN
Sbjct: 208 EGKGLRPLTAQLCDGLVRLPTSPDFPTLN 236


>gi|331703597|ref|YP_004400284.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802152|emb|CBW54306.1| Hypothetical tRNA/rRNA methyltransferase [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 181

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-SANADCVID 69
           + +   I+L  P++ +N+G + R     N  +L ++ P      ++  S  SAN    +D
Sbjct: 2   NKRKINIVLYQPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60

Query: 70  SVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            +R + +  + I       ++  +   R   K +           +      NV ++FG+
Sbjct: 61  CIR-YDDWNDFITKHPNVTLFCLS---RYGQKPISD--------FDFSKINDNVYLVFGK 108

Query: 128 ERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+    +    N     P+     SLNI+  V +  +E +   
Sbjct: 109 ESTGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154


>gi|312149761|gb|ADQ29832.1| putative tRNA/rRNA methyltransferase [Borrelia burgdorferi N40]
          Length = 218

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     + I FG E  GL+ E +  ++  +  P+     S NIS AV ++++  +  
Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMR 179


>gi|226320776|ref|ZP_03796332.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
 gi|226233831|gb|EEH32556.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
          Length = 218

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     + I FG E  GL+ E +  ++  +  P+     S NIS AV ++++  +  
Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMR 179


>gi|15594398|ref|NP_212186.1| spoU protein (spoU) [Borrelia burgdorferi B31]
 gi|218249703|ref|YP_002374583.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
 gi|221217482|ref|ZP_03588953.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
 gi|224533884|ref|ZP_03674469.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|225549731|ref|ZP_03770696.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
 gi|226322036|ref|ZP_03797561.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
 gi|3915341|sp|O51081|Y052_BORBU RecName: Full=Putative tRNA/rRNA methyltransferase BB_0052
 gi|2687923|gb|AAC66431.1| spoU protein (spoU) [Borrelia burgdorferi B31]
 gi|218164891|gb|ACK74952.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
 gi|221192760|gb|EEE18976.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
 gi|224512887|gb|EEF83253.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|225369691|gb|EEG99139.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
 gi|226232626|gb|EEH31380.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
          Length = 218

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E +     + I FG E  GL+ E +  ++  +  P+     S NIS AV ++++  +  
Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLLMR 179


>gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 248

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 29/170 (17%)

Query: 13  KGPVI-ILVDPQLGENIGMVAR---AMWNFNLTQLRLVNP--RDGWPSEKARSSSANADC 66
           + P+I +L       N G + R   A     +     V P  R    +     +S  A  
Sbjct: 99  ENPLILVLDGLTDPHNFGSILRTADATKVCGV-----VIPKHRAVGVTPVVAKTSTGAVE 153

Query: 67  VIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   RV +    L +      +I+ T                    + +   SG+ V +
Sbjct: 154 HVPIARVTNLSQTLDKLKEAGFWIFGT--------------DMDGTPVQKWNTSGKLV-L 198

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I G E  G++       + +I+ P++    SLN   A  ++++E   + +
Sbjct: 199 IIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVFRHKL 248


>gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 273

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 25/166 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN----------AD 65
           ++IL +     N+G + R+    N+  + L          ++   S             D
Sbjct: 122 IVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGD 181

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
               +  ++  LKE +   +   A T R+               + +E + S   + II 
Sbjct: 182 DTWPADGMYR-LKE-LGYKNVAMALTDRS-------------VSIDDEALMSEDKLAIIL 226

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  GL  E I   +  +  P+     SLN++ A  +  W+  + 
Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAKR 272


>gi|313619703|gb|EFR91323.1| RNA methyltransferase [Listeria innocua FSL S4-378]
          Length = 104

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +N   +FG+E  GL  +E+  +N    +  P+     SLN+S    ++ +E +   
Sbjct: 30  PNKNYFFVFGKETTGLP-DELLQANEENCLRIPMTDHIRSLNLSNTAAVLAYEALRQQ 86


>gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 317

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 10/169 (5%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A    +     ++ L       N+G V R++  F      +V      P  +A   +A 
Sbjct: 158 SAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAG 210

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A     S    +    A A  +   A  +  +     V    +    L +       V I
Sbjct: 211 AWKT--SAGTAARTPVARA-TNLTRALESYQKAGLTVVGLAADGETELQDLEALDGPVVI 267

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 268 VVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEASRRR 316


>gi|218199964|gb|EEC82391.1| hypothetical protein OsI_26737 [Oryza sativa Indica Group]
          Length = 343

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            N+    R+     +  + +++  +       R  S  A+  +D + ++S+  E   A+ 
Sbjct: 158 GNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLD-IELWSSTAECFDALK 216

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +             V    +   Q   I+ G E  G++++ + LS+ 
Sbjct: 217 KRGYRIATTYLGND------------SVCVYDMDWSQPTAIVVGNELMGISDDALKLSDL 264

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
             S P+  +  S N+S A  +++   + + I     +       +       +L + E +
Sbjct: 265 HCSVPMKGMVDSFNVSVAAGILMHHAVCDRISRIGHHGDLLPEESRILLAEFYLRHREST 324

Query: 203 LEERGYFRPVEKKKKMLDDL 222
                +     K    +  L
Sbjct: 325 -AGIVHEYAKRKAGNFMAKL 343


>gi|123966176|ref|YP_001011257.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200542|gb|ABM72150.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9515]
          Length = 160

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 46/176 (26%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++ +N G +AR    F++T L L+ P      +K    +         V+    
Sbjct: 3   ISLFEPRIPQNTGSIARTCAAFDIT-LNLIEPLGFKLEDKYLKRA--GLDYWPLVK---- 55

Query: 77  LKEAIADL------------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
               + +               I A + +N                L + I       ++
Sbjct: 56  ----LNNYPNFKKFKESKKNKRIIAFSKKNGIYLNRFRF-------LKDDI-------LL 97

Query: 125 FGRERWGLTNEEIALSNAIISF--P----VNPL---FPSLNISQAVLLMVWECMEN 171
           FGRE  GL    I  SN++IS   P     N       SLN+S A  + ++E  + 
Sbjct: 98  FGREDTGLPESVINGSNSLISIFMPNVELSNNDKKGVRSLNLSVACGIAIYEANKQ 153


>gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB18]
 gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB18]
          Length = 275

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 17/168 (10%)

Query: 3   PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P  P   ++     I+LV        N+G + R+   F +    +V      P      +
Sbjct: 110 PLEPPELDTLPQQGIVLVLDQITDPHNVGAILRSAAAFAVK--AIVTTARHSPEATGVLA 167

Query: 61  --SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             ++ A  ++  V V  NL  A+ DL+        +R      L  +         I   
Sbjct: 168 KSASGALELVPMVTV-QNLARALTDLN--------DRGFQTVGLDSE--GGDDLATIPLS 216

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             + ++ G E  GL        +A+    +     SLN+S A  L ++
Sbjct: 217 APLALVLGAEGKGLRQLTRQTCSALARLDMPGEIKSLNVSNAAALALY 264


>gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
 gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
          Length = 256

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 61/148 (41%), Gaps = 23/148 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84
           NIG + R+   F++  + L  P+D  P+E      ++     +I  ++V +NL+  +  L
Sbjct: 123 NIGAIIRSAAAFDINAIIL--PQDNSPNESGGIAKAACGTLELIPIIKV-TNLRSCMNYL 179

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +I   T    + F              +++ S + V ++FG E  G+        
Sbjct: 180 KKHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRRLVAETC 225

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + +   P++    SLN+S A  ++    
Sbjct: 226 DYLAKIPISQRVESLNVSNAASIIFHSL 253


>gi|136456|sp|P18644|TSNR_STRCN RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
           Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
           rRNA methylase; AltName: Full=Thiostrepton-resistance
           methylase
 gi|46771|emb|CAA26234.1| unnamed protein product [Streptomyces cyaneus]
 gi|1403525|emb|CAA67009.1| Thiostrepton resistance protein [Cloning vector pIJ2581]
 gi|7380884|dbj|BAA93040.1| rRNA methylase [Shuttle vector pRES19]
 gi|17974141|emb|CAC93942.1| thiostrepton resistance gene [Cloning vector pIJ6021]
 gi|18252132|gb|AAL61980.1| thiostrepton resistance protein TsrR [Expression vector pANT849]
 gi|18252137|gb|AAL61984.1| thiostrepton resistance protein TsrR [Expression vector pANT1200]
 gi|42733306|dbj|BAD11208.1| thiostrepton resistance protein [Expression vector pTip-NH1]
 gi|42733313|dbj|BAD11214.1| thiostrepton resistance protein [Expression vector pTip-CH1]
 gi|42733320|dbj|BAD11220.1| thiostrepton resistance protein [Expression vector pTip-NH2]
 gi|42733327|dbj|BAD11226.1| thiostrepton resistance protein [Expression vector pTip-CH2]
 gi|42733334|dbj|BAD11232.1| thiostrepton resistance protein [Expression vector pTip-LNH1]
 gi|42733341|dbj|BAD11238.1| thiostrepton resistance protein [Expression vector pTip-LCH1]
 gi|42733348|dbj|BAD11244.1| thiostrepton resistance protein [Expression vector pTip-LNH2]
 gi|42733355|dbj|BAD11250.1| thiostrepton resistance protein [Expression vector pTip-LCH2]
 gi|42733362|dbj|BAD11256.1| thiostrepton resistance protein [Expression vector pTip-NH1.2]
 gi|42733369|dbj|BAD11262.1| thiostrepton resistance protein [Expression vector pTip-CH1.2]
 gi|42733376|dbj|BAD11268.1| thiostrepton resistance protein [Expression vector pTip-NH2.2]
 gi|42733383|dbj|BAD11274.1| thiostrepton resistance protein [Expression vector pTip-CH2.2]
 gi|42733390|dbj|BAD11280.1| thiostrepton resistance protein [Expression vector pTip-LNH1.2]
 gi|42733397|dbj|BAD11286.1| thiostrepton resistance protein [Expression vector pTip-LCH1.2]
 gi|42733404|dbj|BAD11292.1| thiostrepton resistance protein [Expression vector pTip-LNH2.2]
 gi|42733411|dbj|BAD11298.1| thiostrepton resistance protein [Expression vector pTip-LCH2.2]
 gi|51556866|gb|AAU06204.1| thiostrepton resistance protein [Shuttle cosmid vector pHZ1358]
 gi|51890421|dbj|BAD42594.1| thiostrepton resistance protein [Expression vector pTip-QC1]
 gi|51890428|dbj|BAD42600.1| thiostrepton resistance protein [Expression vector pTip-QC2]
 gi|51890435|dbj|BAD42606.1| thiostrepton resistance protein [Expression vector pTip-QT1]
 gi|51890442|dbj|BAD42612.1| thiostrepton resistance protein [Expression vector pTip-QT2]
 gi|51890449|dbj|BAD42618.1| thiostrepton resistance protein [Expression vector pTip-RC1]
 gi|51890455|dbj|BAD42623.1| thiostrepton resistance protein [Expression vector pTip-RC2]
 gi|51890461|dbj|BAD42628.1| thiostrepton resistance protein [Expression vector pTip-RT1]
 gi|51890467|dbj|BAD42633.1| thiostrepton resistance protein [Expression vector pTip-RT2]
 gi|52354838|gb|AAU44620.1| thiostrepton resistance protein [Cloning vector pJK95]
 gi|63146878|emb|CAI94540.1| thiostrepton resistance [Cloning vector pIJ6902]
 gi|91795125|gb|ABE60866.1| thiostrepton resistance [Conjugative vector pHW001]
 gi|293628574|dbj|BAJ04913.1| thiostrepton resistance protein [Cloning vector pTip-istAB-sacB]
          Length = 269

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S +G V++L   ++  NIG + R       + + LV+      +++    ++    V   
Sbjct: 113 SRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRG-YVFSL 171

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRER 129
             V S  +EAIA +          R++   ++  K    +  + +      + ++FG E+
Sbjct: 172 PVVLSGREEAIAFI----------RDSGMQLMTLKADGDISVKELGDNPDRLALLFGSEK 221

Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G ++  EE + ++  +S P+     SLN+S ++ + + E
Sbjct: 222 GGPSDLFEEASSAS--VSIPMMSQTESLNVSVSLGIALHE 259


>gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
           DSM 15981]
 gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
           DSM 15981]
          Length = 246

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 32/167 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS------ 70
           I+L   +   N+G + R                       A  + A+   +         
Sbjct: 101 ILLDGIEDPHNLGAIIRT----------------------ANLAGAHGVIIPKRRAVGLT 138

Query: 71  VRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFG 126
             V      A+    +  +   TA   +  K  +     +    L  R+     +G++ G
Sbjct: 139 ATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGELMYRLNLKGPIGLVIG 198

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            E  G+        + + S P+     SLN S A  ++ +E +   +
Sbjct: 199 NEGEGVGKLVKEHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQRL 245


>gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           bemidjiensis Bem]
 gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           bemidjiensis Bem]
          Length = 248

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           LQ +  G +++L   Q   N+G + R+        + +   R    +  A  SSA A   
Sbjct: 90  LQGTRDGLILVLDSVQDPHNLGALIRSAACAGANAVVIPKDRAAGVTAVAEKSSAGATET 149

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I   +V +N+ +A+  L     +IY      R+              L ++ F+G  V +
Sbjct: 150 ISVAQV-TNISQALESLKKAGFWIYGADGSARHT-------------LYQQDFTG-PVAL 194

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + G E  G+        +A++S P+     SLN S A  + ++E +   +
Sbjct: 195 VIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLFEVVRQRV 244


>gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
 gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
          Length = 248

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 13/157 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVF 74
           ++IL      +NIG + R+   F +  + L  P+D  P+E  + + +A     +  +   
Sbjct: 103 IVILDQITDTQNIGAIIRSAAAFYINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKV 160

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +NL        ++     R    F  +     A     ++  S   + ++FG E  G+  
Sbjct: 161 TNL------CSYMNYLKKRG---FWIIGVTGYANEYFTDKFISD-KIALVFGAEDKGMRR 210

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 + +   P++    SLN++ A  ++     ++
Sbjct: 211 LVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKS 247


>gi|305666461|ref|YP_003862748.1| putative rRNA methylase [Maribacter sp. HTCC2170]
 gi|88708728|gb|EAR00963.1| putative rRNA methylase [Maribacter sp. HTCC2170]
          Length = 268

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 16  VIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            +ILV   P+   NIG + R     NL  + + NP+    +     SS           V
Sbjct: 120 ALILVAEAPEKPGNIGALLRTADAANLDAVLIANPKGDLYNPNIVRSSVG--------CV 171

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVGIIFGRER 129
           F+N             +T++  +  K        A +   + ++     +   I+ G E 
Sbjct: 172 FTN--------QIGLGSTSQIIDFLKKKQINLFCAALSASQPYTQVNFEKAAAIVVGTES 223

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+ E +  S   I  P+     S+N+S +  ++++E     
Sbjct: 224 TGLSQEWLNASTNNIIIPMEGEIDSMNVSVSAAILIFEAKRQR 266


>gi|315037884|ref|YP_004031452.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1112]
 gi|325956357|ref|YP_004291769.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           acidophilus 30SC]
 gi|312276017|gb|ADQ58657.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1112]
 gi|325332922|gb|ADZ06830.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           acidophilus 30SC]
 gi|327183176|gb|AEA31623.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1118]
          Length = 186

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 38/193 (19%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V V 
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVEVH 59

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF----------SGQNVG 122
              +L   +                    L P +   ++++               +N  
Sbjct: 60  MHDDLNAFLK------------------TLGPDDEMYLISKFSSKNYSQVDYTDKNKNYY 101

Query: 123 IIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            +FG+E  GL    +    +  +  P++      N+S +V +++ E +      + +   
Sbjct: 102 FVFGKETTGLPETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETTH 161

Query: 182 EQNTPATKGELLS 194
                  K +   
Sbjct: 162 HYENDKLKDDYDR 174


>gi|313678221|ref|YP_004055961.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
 gi|312950258|gb|ADR24853.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
          Length = 177

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 17/161 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L +P++  N   + R  +     +L ++ P       K   S   A  ++  +     
Sbjct: 4   IVLFEPEIPPNTANIIRTCFAIG-AKLHIIKPISFSLDPK-YLSRPAAGRLLSDIEHEVH 61

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +S+      D +  Y T    R   K+        +   +   + + + ++FG+E  G
Sbjct: 62  NSYSDFYNKYKDKNIHYIT----RYGLKTYSD-----VDFKKEYENNEEIWLMFGKESTG 112

Query: 132 LTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + +    +  +  P+     S+N++  V ++ +E M  
Sbjct: 113 IDKQVLKDNIDNCLRIPMINKMRSINLANCVAIVGFEVMRQ 153


>gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix
           DSM 17093]
          Length = 241

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 3   PYAPQLQNSAKG--PVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P AP  + + +G  P+++L+       N G + R+        +     R    S     
Sbjct: 78  PEAPFTRAARRGEKPLLVLLDGITDPHNYGAIIRSAEVLGAHGVVTEERRSAPLSAVVAK 137

Query: 60  SSANADCVIDSVRVFSNLK---EAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
            SA A   +  V+V  NL    EA+ A   ++Y  +                A  L +++
Sbjct: 138 VSAGASSHLPLVQV-KNLPRYMEALKARGVWLYGASG--------------DAAALPQQL 182

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +   ++ G E  G+        + +++ P+     SLN S A  ++++  + + 
Sbjct: 183 DWDRPAALVIGAEGAGMRRLVRETCDELVAIPMRGQVASLNASVAAGILLYAALSSR 239


>gi|262065888|ref|ZP_06025500.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380369|gb|EFE87887.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 254

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 21/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----DCVIDSV 71
           +IL D     N+G + R     N   + L        +EK   ++  +        ++  
Sbjct: 107 VILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDVYNEKVIRATMGSILNVNLFYLEKQ 166

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   LKE   + + + AT        K  L           +I   +   +IFG E  G
Sbjct: 167 EIIKLLKE---NNYSVIAT-----YLDKEALP--------YNKIQLKEKNAVIFGNEGRG 210

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + +E I +S+     P+     SLN++ A  +++++  E
Sbjct: 211 ICDEFINISDCKTIIPILSNTESLNVAVASAIILYKFRE 249


>gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           D344SRF]
 gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1636]
 gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           D344SRF]
 gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1636]
          Length = 286

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 199

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T               +      ++  +  ++ ++ G E  G++
Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
          Length = 286

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 199

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T               +      ++  +  ++ ++ G E  G++
Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
          Length = 289

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 144 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 202

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T               +      ++  +  ++ ++ G E  G++
Sbjct: 203 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 247

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 248 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 286


>gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
 gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1162]
 gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1071]
 gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1679]
 gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           U0317]
 gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a04]
 gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133C]
 gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0082]
 gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133A]
 gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133B]
 gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a01]
 gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
 gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1071]
 gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1679]
 gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           U0317]
 gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1162]
 gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a01]
 gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133B]
 gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133A]
 gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133C]
 gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a04]
 gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0082]
          Length = 286

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 199

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T               +      ++  +  ++ ++ G E  G++
Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 247

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 16/170 (9%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L       ++IL       N+G   R         + +   R    +  A   +  A  V
Sbjct: 90  LAGKENPLLLILDGVTDPHNLGACLRNADAAGAVAIIVPKDRSAQLTATASKVACGAAEV 149

Query: 68  IDSVRVFSNLKEAIADLHFIYATTAR---NRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +  VRV +             A T R      N   V    EA   + +   +G  + I+
Sbjct: 150 VPLVRVTN------------LARTMRYLQEEKNIWIVGTAGEATHDIYQTKLTG-PLAIV 196

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G E  G+        + +I  P+     SLN+S A  + ++E +   I 
Sbjct: 197 MGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIE 246


>gi|294791453|ref|ZP_06756610.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304]
 gi|294457924|gb|EFG26278.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304]
          Length = 228

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P    L  ++  P +    P++  N G   R       T L LV P      +     
Sbjct: 61  LQPSQASLAETST-PHLCFYSPRIPGNTGSAIRLCAITG-TILHLVEPLGFNLKDTKLRR 118

Query: 61  SANADCVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLA-PKEAAIVLNER 114
           +       D   V     F+NL E++ D   I + TA+ R  +  V   P +  +   E 
Sbjct: 119 A--GLDYHDMTHVVIHPNFTNLVESMPD-SRIISFTAQARTLYTEVDYQPNDILLFGPEP 175

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                 + I+ G        + I      + FP+ P   SLN++    + ++E       
Sbjct: 176 GNIPDPMDIMSG--------DHIYK---QVRFPMRPSLRSLNLANCAAIALYEAWRQMGF 224

Query: 175 SSEK 178
           +  +
Sbjct: 225 AGGE 228


>gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1039]
 gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1039]
          Length = 286

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 141 ILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARV-TNL 199

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +++ T               +      ++  +  ++ ++ G E  G++
Sbjct: 200 VQAVQQLKETGFWVFGT---------------DMTGTNFQKWNAKGSIALVIGNEGKGMS 244

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +++ P+     SLN S A  L++++     
Sbjct: 245 PGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQR 283


>gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 272

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + + S + + +I G E  GL ++ IA  +  +  P++    SLN++ A  +  WE 
Sbjct: 214 KALRSEEKLAVILGTEGDGLASQTIADCDYTVKIPMSHGVDSLNVAAASAVAFWEL 269


>gi|299116545|emb|CBN74733.1| hypothetical tRNA/rRNA methyltransferase [Ectocarpus siliculosus]
          Length = 220

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 52/205 (25%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           ++L  P +  N G + R    F   +L L+ P     SE+    +       + V   V 
Sbjct: 4   VVLFRPLIPANTGNIGRTCLGFG-ARLHLIKPLGFDLSEREVKRA--GLDHWEHVDLAVH 60

Query: 75  SN---LKEA-------------------------------IADLHFIYATTARNRNNFKS 100
           +      E+                               IAD+ F +A T +       
Sbjct: 61  NTWTCFTESMLPVLGHNNSGGGGGGNIYLVSKRLKLGSTPIADVDF-FAPTPKP---PPI 116

Query: 101 VLAPKEAAIVLNE-----RIFSGQNVGIIFGRERWGLTN-EEIALSNAI--ISFPVNPLF 152
           V  P   A  L+         S  +V ++FG E  GL+  EE     A+  +  P+    
Sbjct: 117 VAQPGGGAGELSSDTVGSSACSEGDVALVFGNEVDGLSGLEEGERGRALPAVYLPMRDDV 176

Query: 153 -PSLNISQAVLLMVWECMENSIVSS 176
             S N+S AV + V+E       + 
Sbjct: 177 IRSYNLSNAVAMAVYEVERQRREAP 201


>gi|299143999|ref|ZP_07037079.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518484|gb|EFI42223.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 260

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+   F+L  + L        + K   S+  +   +  + +  +  E + 
Sbjct: 125 QDPGNVGGLIRSADAFSLDGIILSKNTVELYNPKLIRSTMASVFRV-KLYIVESKNEILK 183

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                          FK +    E A    E  FS +N  I FG E  G+++E  + S+ 
Sbjct: 184 ----------LKEKGFKIISTSVENAKASYEYKFS-ENSVITFGNEAKGVSDEVFSYSDE 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            I  P++    SLN++ A  ++ +E   
Sbjct: 233 KIYIPMSEEINSLNVNVAASILFYEMNR 260


>gi|45644682|gb|AAS73070.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
           EBAC20E09]
          Length = 238

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 11/148 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G   R+   + +  L +        +E A + SA    +I ++   SNL   +   
Sbjct: 101 PRNLGSCIRSAAVYEIDALIINKHHCAPLNEVAHNVSAGGAELI-NIFYVSNLINCLK-- 157

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     R +   +    E A  +        +  II G E  G+  +     + +I
Sbjct: 158 --------YLRKSNIDIYGLSEHAQKIYTSCDFTNSSAIILGSEESGMRQKTSESCDELI 209

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
              +N  F S N+S A  +++ E     
Sbjct: 210 KLNLNKKFKSFNVSVATGIILSEISRQR 237


>gi|257126058|ref|YP_003164172.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
 gi|257049997|gb|ACV39181.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
          Length = 256

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
              +G V+IL D Q   N G + R M   N   L L        + K   ++ +    ++
Sbjct: 102 EDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLN 161

Query: 70  SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              ++   ++ +  L+       AT     +                E+I   +N   IF
Sbjct: 162 --IIYETPEKIVEFLNNKNYLKIATALHEDSIS-------------YEKIELRENNAFIF 206

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++   I  S+     P+     SLN+S A  + +++  E
Sbjct: 207 GHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMRE 251


>gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 257

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 18/151 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79
           Q   N+G + R  + FN+ Q  + N      + K   +S  A   I+ +R  S    L+ 
Sbjct: 122 QDPGNLGTILRTCFAFNVKQ-VIFNNCVDLYNAKTIKASMGAIFKINFLRFNSSKLTLEF 180

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            + +  ++ AT          +L   + AI LNE +   Q   ++ G E  GL+   I  
Sbjct: 181 LLKNNFYLIAT----------ILD--KNAISLNE-LKIKQKYCLMVGNEGHGLSQNFIDY 227

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++      +N    SLN++ A  + ++E  +
Sbjct: 228 ASIKTMIKMNQT-ESLNVAVATAIFLYELNK 257


>gi|46447426|ref|YP_008791.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401067|emb|CAF24516.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 265

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 27/170 (15%)

Query: 15  PVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           P  ++ +  +   N+G + R+     +  L + +      +     +S            
Sbjct: 115 PFFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLF------T 168

Query: 74  FSNLKEAIADLHFIYATTARNRNN-------FKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              ++             AR  +           +LA    A     ++     V I  G
Sbjct: 169 VPTVE-------------ARGEDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVG 215

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            E+ GL+   +  +   +  P+  +  SLN++ A  L+++E +    +  
Sbjct: 216 TEQLGLSERWMKQATMQVRIPMMGVADSLNVAMATTLLLYEVLRQRQLKK 265


>gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
           odontolyticus F0309]
 gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
           odontolyticus F0309]
          Length = 325

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 16/165 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            LQ      ++ L       N+G V R+   F    + +   R    +  A   SA A  
Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226

Query: 67  VIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   R   +   L+EA    +F+      +                L     +   + +
Sbjct: 227 RVPVARATNLVRALEEAKQAGYFVVGL---DGGGDAP----------LRGLSLADGPLVV 273

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + G E  GL+       + I+S P+     SLN + A  + ++E 
Sbjct: 274 VTGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEV 318


>gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1]
          Length = 255

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 28/169 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL   +   N+G + R         + +   R    +     +SA A       +V +
Sbjct: 106 IIILDGIEDPHNLGAIIRTANQAGAHGIIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTN 165

Query: 76  ---NLKEAIA-DLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
               +KE     + F+ A    TT  + N    +                    G++ G 
Sbjct: 166 ISNTIKELKEKGMWFVCADMGGTTMYDLNLTGPI--------------------GLVIGN 205

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E  G++       +   S P+     SLN S A  +  +E +   + S 
Sbjct: 206 EGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAYEIVRQRLKSG 254


>gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
 gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
          Length = 260

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +  +AP+     +G V++L   +   N+G + R         + L+       + K   S
Sbjct: 103 LAAFAPE-----RGMVLVLDRIRDPGNLGTLIRTADALGAAGVVLLENTADLYNPKVVRS 157

Query: 61  SANADCVIDSVRVFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +  +   +          L+E               R +  ++ A          R+   
Sbjct: 158 TMGSLFHLPVFTGVKTGELEE-------------WCRQHGYALWATALEGAEDMTRLTWP 204

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   ++ G E  G++ E +A ++  +  P+     SLN++ A  ++++E    
Sbjct: 205 EKTALVLGSEAEGVSPEILAAADQKVKIPMAGHAESLNVAVAGGIVMFEAARA 257


>gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 245

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 15/169 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           L   +   +++L       N+G   R      +    +V P+D   +  A     +  A 
Sbjct: 90  LAQHSAPLLLVLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANITATVSKVACGAA 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  VRV           +      A        V    EA   + +   +G  + I+ 
Sbjct: 148 ETVPLVRVT----------NLARTMRALQEQGIWFVGTAGEATHDIYQAKLTG-PLAIVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           G E  G+        + +I  P+     SLN+S A  + ++E +   + 
Sbjct: 197 GAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQRLA 245


>gi|222110441|ref|YP_002552705.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
 gi|221729885|gb|ACM32705.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
          Length = 260

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 55/170 (32%), Gaps = 29/170 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A  L      P ++L   Q   N+G + R+   F  TQ+  +       S K   +  
Sbjct: 104 PEAEGLDGRM--PTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGM 161

Query: 63  NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +   R+   L  A AD+      + AT++   +       P              
Sbjct: 162 GAHFAL---RLVEGL--APADIDRLEVPLLATSSHEGDFLHRAALPW------------- 203

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
              G I G E  G++      +   I    P      SLN+  A  + + 
Sbjct: 204 -PCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEE--SLNVGAAAAICLH 250


>gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
           NAS-14.1]
 gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
           NAS-14.1]
          Length = 258

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P ++L+       N+G + R+      +   +V       + +  + +  A   ++ 
Sbjct: 105 AEAPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVVG-MRHHAAPETGALAKTASGALER 161

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125
                  NL +AI +L           +    VL     A +  E    G+    V ++ 
Sbjct: 162 QPYLRVRNLADAIKELQ----------SMGYLVLGLDGEADMTVESALEGKRDRPVALVL 211

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL  +     +A++       F SLN+S A  + ++   ++S
Sbjct: 212 GAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAAIALYASRDHS 258


>gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 01V1-a]
 gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 01V1-a]
          Length = 180

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 24/166 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV------FSN 76
           +   N+G + R      +  + +   R    +     +S  A   +  VRV         
Sbjct: 33  EDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDT 92

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LK+      + + T     N               + R        ++ G E  G++   
Sbjct: 93  LKD--KGY-WFFGTAMSGDNYTN-----------WDAR----GKCVLVIGNEGKGISPLL 134

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +   +  ++ P+     SLN   A  +++++   +        +K+
Sbjct: 135 LKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSRQAVKNGQIKQ 180


>gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1]
 gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 11V1-d]
 gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 03V1-b]
 gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 3008A-a]
 gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2052A-d]
 gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2053A-b]
 gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 143-D]
 gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 60-B]
 gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 1401G]
 gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 03V1-b]
 gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 3008A-a]
 gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 143-D]
 gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 60-B]
 gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 1401G]
          Length = 258

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 24/166 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV------FSN 76
           +   N+G + R      +  + +   R    +     +S  A   +  VRV         
Sbjct: 111 EDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDT 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LK+      + + T     N               + R        ++ G E  G++   
Sbjct: 171 LKD--KGY-WFFGTAMSGDNYTN-----------WDAR----GKCVLVIGNEGKGISPLL 212

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +   +  ++ P+     SLN   A  +++++   +        +K+
Sbjct: 213 LKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSRQAVKNGQIKQ 258


>gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
          Length = 262

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 24/166 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV------FSN 76
           +   N+G + R      +  + +   R    +     +S  A   +  VRV         
Sbjct: 115 EDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDT 174

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LK+      + + T     N               + R        ++ G E  G++   
Sbjct: 175 LKD--KGY-WFFGTAMSGDNYTN-----------WDAR----GKCVLVIGNEGKGISPLL 216

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +   +  ++ P+     SLN   A  +++++   +        +K+
Sbjct: 217 LKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFNSRQAVKNGQIKQ 262


>gi|21673707|ref|NP_661772.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
 gi|21646829|gb|AAM72114.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
          Length = 229

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R+     + Q+  ++ R    +++   ++A A   +   +V   L E+   +
Sbjct: 44  PHNLAAIIRSCDAVGIHQVHAISYRSSIKTKQ--HTAAGASRWL---KVH--LNESFVPV 96

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                   + R +   +L        +N   I   +   I+ G E  G + E + L++  
Sbjct: 97  GE------KLRQSGMQILVAHYCPEAVNFRSIDYTRPTAIVMGEELKGPSQEALGLADNF 150

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF-----LDY 198
           I  P+  +  SLN+S A  L+++E       +   + +      +  ++           
Sbjct: 151 IYIPMMGMVESLNVSVAAALILFEAQRQRQAAGLYDTRHF----SDSDIERLLFEYTYPR 206

Query: 199 LEISLEERGYFRPV 212
           L   L ++G   P 
Sbjct: 207 LAAVLRDQGKPYPK 220


>gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           thermophila DSM 6578]
          Length = 241

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF 74
           + L   Q   N+G + R+   F    L ++ P  R    +     SS+ AD  +  V V 
Sbjct: 95  VALDHLQDPHNVGAILRSADQFGA--LGVIIPERRAVKDAASISKSSSGADAFVP-VVVE 151

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +NL+ A+  +          +  F  V         ++E   SG  V ++ G E  GL+ 
Sbjct: 152 TNLRRALLHV---------KKAGFW-VYGADMEGQPVHEVDLSG-RVCLVLGAEGKGLSR 200

Query: 135 ---EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              EE+   + +++ P +    S N+S A  ++++E     
Sbjct: 201 LLREEV---DLLVAVPAHGHVDSFNVSVAAGILMYEVRRQQ 238


>gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255]
          Length = 265

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72
           V+IL   Q   N+G + R   +  +  +  +       + K   S+  +     +ID+ +
Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDVNIIDASQ 179

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 + +  L F             ++++         ++I  G  V ++ G E  G+
Sbjct: 180 --DETVDMLKSLDF-------------NIVSSYLNTENFYDKIDYGSKVALVIGNEANGI 224

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             E ++ S+ ++  P+     SLN + +  ++++E  +
Sbjct: 225 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 262


>gi|121602085|ref|YP_989283.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614262|gb|ABM44863.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 155

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 11/155 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L  P +  N G + R      +  + ++ P     S++    +      ++      +
Sbjct: 5   IALFQPDIAGNTGTILRLGACLGVH-VHIIEPAGFDLSDRNLKRA--GMDYLERA----S 57

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+  I   HF+ A     +   + +      A      I   +N  ++FGRE  G+ +  
Sbjct: 58  LERHIDWQHFLDAM----QKFNRRLFLLSTKATTCYTNIRYQKNDVLLFGRESAGVPDYV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +  +  P+     SLN++ +V +   E +  
Sbjct: 114 HQAVDCTLKIPMQQQARSLNLAMSVAITTGEALRQ 148


>gi|301633558|gb|ADK87112.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma pneumoniae
           FH]
          Length = 239

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L + Q   N G + R      +  +          +     +S        ++   +N
Sbjct: 95  VMLDEIQDLHNFGAILRTCMAAEVDGIIFKKHNQAPINSTVIRTSMGTVFY-QNLVQVTN 153

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L  AI  L     +  ATT   R   K         +  ++RI       ++ G E  GL
Sbjct: 154 LSYAITTLQKHGFWTVATTLDERLKPKDYR-----QVDFDKRI-------LLVGNEDKGL 201

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
               +  ++  +  P+NP   SLN+S AV ++++  
Sbjct: 202 NALLLKNADLKVKIPMNPKLNSLNVSVAVGIILFGW 237


>gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 288

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 10/142 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           ENIG + R      +  +            +    S     ++   +     ++   DL 
Sbjct: 153 ENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSMGHALLVPFAKS----QDWPGDLD 208

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
            +     R+       L P E ++ L   + SG  V  + G E  GL    +   +    
Sbjct: 209 VL-----RDSGFTTVALTPGEGSVPLAGAV-SGGKVAFLVGAEGPGLAEHTMRRCDVRAR 262

Query: 146 FPVNPLFPSLNISQAVLLMVWE 167
            P++    SLN++ A  +  +E
Sbjct: 263 IPMSRGTDSLNVATAAAVAFYE 284


>gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
 gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
          Length = 247

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 17/151 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81
           Q   N+G + R   +F    +          ++KA  S+  A   I  VR  FS L  A+
Sbjct: 111 QDPGNLGTLIRTAISFGFDGVYCSTETCDLYNDKAIRSTQGALFHIPVVRKDFSTLIPAL 170

Query: 82  -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            +    + AT+                       I   + +  + G E  G+  + IA +
Sbjct: 171 QSQGVKVIATS--------------LQESTTMGEIPVTECMAFVMGNEGQGVHQDIIAQA 216

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +   +   F SLN++ A  ++++     
Sbjct: 217 DFRVRIEM-EGFESLNVAVAGGIIMYHYRSG 246


>gi|254303889|ref|ZP_04971247.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324081|gb|EDK89331.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 256

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 21/165 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----D 65
           S    +IIL D     N+G + R     N   + L        +EK   ++  +      
Sbjct: 103 SLSNNLIILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNL 162

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++   + + LKE                NN+  +    +   +   +I   +   +IF
Sbjct: 163 YYLEKSEIINFLKE----------------NNYSIISTYLDKTAIPYNKIKLKEKNAVIF 206

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++++ I +++     P+     SLN++ A  +++++  E
Sbjct: 207 GNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 251


>gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533]
 gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533]
 gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 253

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +     N+G + R         + L        + K + S   +   I    + + 
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQ--IIQNP 169

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EAI+             N     ++  +              + ++ G E  G + E 
Sbjct: 170 ILEAISSF---------KENGLPVYVSILDKTAKSLNNCAPVPQLALVIGNEAHGASKEV 220

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           I  ++  I  P+     SLN + A  +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIY 250


>gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 273

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 28/156 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+     +    L+ PR   P   ++   S      +   R+            
Sbjct: 136 NVGAIFRSAAALGV-DAVLITPRCADPLYRRSIRVSMGTVFQVPWARI------------ 182

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER---------IFSGQNVGIIFGRERWGLTNEE 136
                T   ++         E+A +  +              + + +I G E  GL+   
Sbjct: 183 -----TRWPKDLEILHEHGFESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHT 237

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +A +   +  P+     SLN++ A  +  WE    S
Sbjct: 238 LAQTKHTVMIPMTHGVDSLNVAAASAVAFWETRLRS 273


>gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 283

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              VG +FG E WGL  E +AL++  +S P+     SLN++ A  + ++      
Sbjct: 226 DGPVGWVFGNEAWGLPEETVALTDGAVSVPIYGGAESLNLATAAAVCLYTTARQQ 280


>gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
           ruminis ATCC 25644]
 gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
           ruminis ATCC 25644]
          Length = 248

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           IL   +   N+G + R      +  + +   R    +     +S  A   +   RV +  
Sbjct: 104 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSTVAKTSTGAVEYVPVCRVTNLA 163

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I+ T                           G    ++ G E  G+++
Sbjct: 164 QTVDELKNRGLWIFGT--------------DMKGQDFRNWDAKG-PTALVIGNEGKGISS 208

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 + +++ P+     SLN S A  L++++
Sbjct: 209 LLKKKCDEMLTIPMIGHVQSLNASVAASLLIYQ 241


>gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 246

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 17/161 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R      +  + +   R    +      +  A   +  VRV +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLA 159

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             ++       +   T                 A     +      + ++ G E  G+  
Sbjct: 160 RTMRALQEQGVWFVGTAG--------------EATHDIYQAKLTGPLAVVMGAEGDGMRR 205

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                 + +I  P+     SLN+S A  + ++E +   +  
Sbjct: 206 LTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAQ 246


>gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437]
          Length = 247

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 25/157 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79
           +   N+G + R      +  + +   R    +     +SA A   +  VRV +      E
Sbjct: 107 EDPHNLGSILRTADASGVHGVVIPKRRAAGLTPTVAKTSAGAVEHVPVVRVTNLNRTADE 166

Query: 80  AIADLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                 ++ A     +AR      S+                   V ++ G E  G++  
Sbjct: 167 LKERGVWLVAGDADASARYDEMDYSL------------------PVALVIGNEGKGVSRR 208

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                +  +  P+     SLN S A  L+++E +   
Sbjct: 209 LKEKCDFTVGLPMKGAVSSLNASVAAALLMYEVLRGR 245


>gi|319943811|ref|ZP_08018092.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743044|gb|EFV95450.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 328

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 15/176 (8%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSS 60
           TP      ++    ++IL   Q   N+G + R      +   L        W + K   +
Sbjct: 166 TPRPALPASAPDHDLVILDRIQDPGNVGTILRTAAAAGIRTVLTTAGTAACW-APKVLRA 224

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                 V++   +  N+   +  L              +   +    A  L       Q 
Sbjct: 225 GMGGHFVLE---IHENIP--LEQLKAQVGALPLAGTVLQDGQS--LYASDLR------QP 271

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  +FG E  G+  E  A     ++ P +P   SLN++ +  + ++E     + S+
Sbjct: 272 LAWVFGNEGEGIDPELQARLGCRLTIPQDPGVESLNVAASAAVCLFEQRRQRLASA 327


>gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
          Length = 248

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R+     +    ++ PR      +   R  S+ +   +  +RV +
Sbjct: 100 ILDGITDPHNLGACLRSADAAGVH--MVIAPRNRSASINSTVRKVSSGSADHVAFLRVTN 157

Query: 76  NLK--EAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            L+  + +     +I  T      + + +   K    +            ++ G E +G+
Sbjct: 158 LLRILKLLQKYDIWIVGT---VEKSDREIFDAKLVGPL-----------ALVMGSEGYGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   N IIS P+     SLN+S A  + ++E +   
Sbjct: 204 RRVTKENCNEIISIPMCGFTSSLNVSVATGICLFEALRQR 243


>gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi
           ATCC 49188]
          Length = 286

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            A +L      P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 125 RARKLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 184

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH     +   +        P+E      E   SG  + 
Sbjct: 185 GALEMISHIEV-RNLAEAIEELH-----SLGFQTIGLDSEGPQEM-----EATLSGGRIA 233

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +      A+    +     SLN+S A  + ++
Sbjct: 234 LVLGAEGKGLRQKTRETVTALARLDMPGEIKSLNVSNAAAISLY 277


>gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1]
 gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium
           nodosum Rt17-B1]
          Length = 234

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 21/166 (12%)

Query: 13  KGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + P I+L+D  Q  +N+G + R      +  + L        +  +  +SA     I  +
Sbjct: 83  ENPFIVLLDQVQDPQNLGAIVRTAVAAGVNMVVLTKDNSAHVTPGSIKASAGTIFRIP-I 141

Query: 72  RVFSNLK---EAIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            +  NL    E + D   +IY    R     K +             +   + +GI+FG 
Sbjct: 142 VITVNLARYIEKLKDKGVWIYGADMRG----KPLW-----------EVKLERPLGIVFGN 186

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E  G+        + ++S P+     SLN+S +  ++++E +   +
Sbjct: 187 EGSGIRQLVKESCDELVSIPMKTPIDSLNVSVSAGILIYEVLRREM 232


>gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 249

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G   R      +    ++ PRD     +   +  +  A   +  + V +       
Sbjct: 110 PHNLGACLRTADAAGVH--AVIAPRDKAVGLNSTVQRVACGAAETVPYIMVTN------- 160

Query: 83  DLHFIYATTARNRNNFKSVLA-PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                 A T R   +    L    + A     ++ + + +  + G E  G+        +
Sbjct: 161 -----LARTMRQLKSRDVWLVGTDDQATGSLHQVDARRPMAWVMGAEGEGMRRLTRETCD 215

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +++ P+     SLN+S A  + ++E +    V+
Sbjct: 216 ELVTIPMLGSVESLNVSVASAVCLYESVRQRTVA 249


>gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4]
 gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4]
          Length = 294

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 65/167 (38%), Gaps = 21/167 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + L+       + +   ++  +   +  V+  + 
Sbjct: 143 VALDRVRDPGNLGTIIRTADAAGASGVMLIGDSTDPFAMETVRATMGSIFALPLVK--TT 200

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + + +     A +  + AT      ++++V   +             + V ++ G E+ G
Sbjct: 201 VADFLGWKTKAGVS-VVATHLAGAVDYRTVDYKR-------------RPVVVLMGNEQSG 246

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           L  E  + ++ +   P   L  SLN++ A  +M++E   + +   E 
Sbjct: 247 LPEELASRADMLARIPQAGLADSLNLAVATGVMLFEARRHLLTLDEA 293


>gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus 16]
 gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus 16]
          Length = 245

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 15/159 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D   +  A     +  A   +  VRV  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANITATVSKVACGAAETVPLVRVT- 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G ++ I+ G E  G+   
Sbjct: 157 ---------NLARTMRALQEQGIWFVGTAGEATQDIYQAKLTG-SLAIVMGAEGDGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                + +I  P+     SLN+S A  + ++E +   + 
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQRLA 245


>gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
           SKA14]
 gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
           SKA14]
          Length = 247

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 21/171 (12%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++LV  + Q   N+G   R+      T + +   +    +   R +SA A 
Sbjct: 91  LVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAGATAVIIPKDKSATVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             I  V   +NL   + DL     +IY                   A     ++    N+
Sbjct: 151 DRIP-VVAVTNLSRCLKDLQKQGVWIYGLAG--------------EATASLYQLDLKGNI 195

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ G E  GL        + ++  P+     SLN+S A  + ++E +   
Sbjct: 196 ALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVRQR 246


>gi|169836038|ref|ZP_02869226.1| 23S rRNA methyltransferase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 256

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 11/158 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG V+IL D Q   N G + R M   N   L L        + K   ++ +    ++   
Sbjct: 105 KGDVVILDDVQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKLN--I 162

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++   +  +  L+           N+  +        +  E+I   +N   IFG E  G+
Sbjct: 163 IYETPENIVKFLN---------DKNYLKIATALHEDSISYEKIELRENNAFIFGHEGGGV 213

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +   I  S+     P+     SLN+S A  + +++  E
Sbjct: 214 SEYLIENSDIKAIIPIYGNIESLNVSVATGIFLYKMRE 251


>gi|121594908|ref|YP_986804.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
 gi|120606988|gb|ABM42728.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
          Length = 260

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 55/170 (32%), Gaps = 29/170 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A  L      P ++L   Q   N+G + R+   F  TQ+  +       S K   +  
Sbjct: 104 PEAEGLDGRM--PTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGM 161

Query: 63  NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A   +   R+   L  A AD+      + AT++   +       P              
Sbjct: 162 GAHFAL---RLVEGL--APADIDRLEVPLLATSSHEGDFLHRAALPW------------- 203

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
              G I G E  G++      +   I    P      SLN+  A  + + 
Sbjct: 204 -PCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEE--SLNVGAAAAICLH 250


>gi|311267819|ref|XP_003131753.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Sus
           scrofa]
          Length = 361

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 14/183 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76
           +L   Q   N+G V R+     + ++          +     +SA A  V+D   VFS  
Sbjct: 156 VLEGLQDPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAMEVMD---VFSTD 212

Query: 77  ----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 +A A   ++ A           +    E  I         Q   ++ G E  GL
Sbjct: 213 DLAGFLQAKARQGWLVA--GTVGCPGPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGL 270

Query: 133 TNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPAT 188
           + E  A    +++  P     P   SLN+S A  +++            +  +EQ+    
Sbjct: 271 SREVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVEQKREQHLLQD 330

Query: 189 KGE 191
             E
Sbjct: 331 PQE 333


>gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 271

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 68/174 (39%), Gaps = 19/174 (10%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + + + P+I +L   +   N+G + R      +  + + N R    ++    +S  A 
Sbjct: 113 KAEEANEDPIIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAI 172

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  VRV +    +        +++ T               +       ++ +   + 
Sbjct: 173 EHVPVVRVTNISKTIDLLKERGVWVFGT---------------DMKGQSMWQMDAALPIA 217

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  G++       + +I+ P+     SLN S A  L++++  ++ + +S
Sbjct: 218 VVIGNEGKGVSPGVKKHLDGMITIPMRGHVQSLNASVAAGLLMYQIYQSRMGNS 271


>gi|166032323|ref|ZP_02235152.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
           27755]
 gi|166028046|gb|EDR46803.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
           27755]
          Length = 288

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 42/178 (23%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR 72
           ++IL +     N+G + R  A  N        + P    P   +A   S      I    
Sbjct: 127 IVILENVMNPTNVGAIFRSAAALNM---DAVFLTPGCSDPLYRRASRVSMGTVFQIPWTF 183

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE------------------- 113
           +  N                      + +L P++A   L E                   
Sbjct: 184 IQDN----------------NEMRCQREILWPRQAITELREMGYKTAALALTDDSVGIDN 227

Query: 114 -RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             +   + + II G E  GL +  I + +  +  P++    SLN++ A  +  W+  +
Sbjct: 228 PELMQEEKLAIILGTEGEGLMDRTIEMCDYTVKIPMSHDVDSLNVAAASAVAFWQLGK 285


>gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus
           LGP32]
 gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio
           splendidus LGP32]
          Length = 246

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 17/161 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R      +  + +   R    +      +  A   +  VRV +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLA 159

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             ++       +   T                 A     +      + ++ G E  G+  
Sbjct: 160 RTMRALQEQGVWFVGTAG--------------EATHDIYQAKLTGPLAVVMGAEGDGMRR 205

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                 + +I  P+     SLN+S A  + ++E +   +  
Sbjct: 206 LTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAQ 246


>gi|328868520|gb|EGG16898.1| hypothetical protein DFA_07879 [Dictyostelium fasciculatum]
          Length = 382

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 72/195 (36%), Gaps = 47/195 (24%)

Query: 17  IILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++ +      NI  V R+     +  + +V  R  + S  A   S  ++  +   R   
Sbjct: 112 VVVCEDLGNPGNIAAVVRSCDAMGIQHMHIVEKRIRFDSFGAI--SKGSEKWVTIHRHAD 169

Query: 76  NLK--EAIADLHFIYATTARN--------------RNNFKSVLAP--------------- 104
            L+  + + D  +   ++  +              +N     L P               
Sbjct: 170 TLECVQNLRDNGYKIWSSDLSLGAFPFDKLVFQPNQNIIPPQLDPFYNHLKNQNNQNNQN 229

Query: 105 ------------KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
                       KE +   +  I + + + I+FG E  G+++E  +LS+  I  P++ L 
Sbjct: 230 NQNQNNIFDNIYKEYSKDKDNVILNNEKIAIVFGNEHNGVSDEMKSLSDRRIFLPMSGLV 289

Query: 153 PSLNISQAV-LLMVW 166
            S N+S +V +L+ +
Sbjct: 290 ESFNVSVSVGMLLAY 304


>gi|212723624|ref|NP_001132172.1| hypothetical protein LOC100193597 [Zea mays]
 gi|194693648|gb|ACF80908.1| unknown [Zea mays]
          Length = 365

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 14/160 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G + R+   F    + L+       +EKA  ++  A   +    + S
Sbjct: 203 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLP---IVS 259

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV---LNERIFS---GQNVGIIFGRER 129
                  DLH +  T  R +       +  +A+     L+  +      +++ ++ G E 
Sbjct: 260 GT---WHDLHALV-TKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEG 315

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            GL+ E +     +++ P+   F SLN+S A  + ++   
Sbjct: 316 NGLSAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 354


>gi|328949341|ref|YP_004366678.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328449665|gb|AEB15381.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 270

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 21/142 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSE-KARSSSANADCVIDSVRVFSNLKEAIAD 83
             NIG + R            ++P    P++ +A  S       +   R   +L+E   D
Sbjct: 138 PFNIGSIFRTAEAMGCEN-VFISPNCTDPNQSRALRSGMGCIETLGYKRC--SLEELPQD 194

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA- 142
                          K V   +     + E  F  + + +I G E  G++ E +  ++  
Sbjct: 195 ---------------KPVFVLETGGTPITEFSFPKEGI-VIIGSEELGVSPEALKRADYG 238

Query: 143 IISFPVNPLFPSLNISQAVLLM 164
            +S P+  L  SLN+  A  ++
Sbjct: 239 RVSIPMTGLKASLNVGVAFGIL 260


>gi|289643246|ref|ZP_06475372.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
 gi|289506951|gb|EFD27924.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
          Length = 265

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL-- 77
           VD Q   N G + R+        +            KA  +SA +   +    V +++  
Sbjct: 104 VDTQDPGNAGTIVRSADAAGADAVVFAGASVDPFGGKAVRASAGSIFHLP---VVTDIGV 160

Query: 78  KEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +A+          +  T +  R+         + A  L          G +FG E  GL
Sbjct: 161 ADAVRQIREHGCRIVATTPSAPRDI-----DTAQDAGEL------DTPTGWLFGNEARGL 209

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               +  ++A++  PV     SLN++ A  + ++      
Sbjct: 210 PRATVVSADAVLRVPVYGQAESLNLAVATAICLYASARAQ 249


>gi|695296|gb|AAB41449.1| spoU [Chlamydia trachomatis]
          Length = 119

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 17/102 (16%)

Query: 73  VFSNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V  +L+EA+  +    I+  T +  + +     P +                 IFG E  
Sbjct: 26  VVDSLEEALLGVPKERIFCLTTKGSSYYGERELPLDG--------------TYIFGAESK 71

Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+   + A S+  +  P+     SLN++ +V ++++E    
Sbjct: 72  GLSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 113


>gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 247

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 23/176 (13%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SA 62
            L ++ +GP ++LV        N+G   R           ++ P+D      A  +  ++
Sbjct: 88  DLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAVGINATVAKVAS 145

Query: 63  NADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +    V +    L E      ++  T               + A          Q
Sbjct: 146 GAAETVPYFMVTNLARTLGELKERNIWVIGTA--------------DDAPRTLYAADLRQ 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            V ++ G E  G+        + ++S P+     SLN+S A  + ++E +     +
Sbjct: 192 AVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLYEAVRQRGAT 247


>gi|297571490|ref|YP_003697264.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931837|gb|ADH92645.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 281

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 12/174 (6%)

Query: 3   PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           P  P ++           +I+L +     N+G V R+M       + L +        +A
Sbjct: 111 PELPSVEEFLGPDSTARRIIVLENLVNHTNVGAVFRSMAALGFDAVLLTDSASDPLYRRA 170

Query: 58  RSSSANADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
              S      +   R+  +    + + D  +I A+ A   +       P +    L + +
Sbjct: 171 VRVSMGTVFQVPWTRIPHWPRSMQMLKDRGWITASLALRDDAL-----PLDQFAQLPDVM 225

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                V +I G E  GL+   I+ ++  +  P+     SLN++ A  +  WE  
Sbjct: 226 APDSKVALILGTEGDGLSAATISHADHAVVIPMAGGVDSLNVAAAGAVAAWELR 279


>gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter
           thermophilus TK-6]
          Length = 240

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 20/174 (11%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFN-LTQLRLVNP--RDGWPSEKARSSSA 62
            +++ K    ILV       +N+G + R       +  L    P  R    ++    +SA
Sbjct: 81  FKDALKKNSFILVLDHLTDPQNVGNLLRTCEVLGGVGALL---PTHRSSPINQVVVKASA 137

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +   +V  +L +A+ D           +     V++ +     +           
Sbjct: 138 GSVFHLKISKV-PSLSKALKDF----------KKQGGWVISVERGGKDIRYTSIP-LPCA 185

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  G++   + +S+ ++S P+     SLN+S A  + +WEC+  SI+ S
Sbjct: 186 LVLGSEGEGVSKSLLEISDLVLSIPMVGKINSLNVSSAGAIAMWECVRGSIIKS 239


>gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
           35406]
 gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
           35406]
          Length = 261

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 23/169 (13%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P   ++   P ++L + Q   N+G + R    F    +          S K   ++  A 
Sbjct: 101 PPSASTITAPSLLLDNVQDPGNVGSILRTADWFGCRSVFTTEGTADPFSPKVVQATMGA- 159

Query: 66  CVIDSVRV-----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +  V+V        L +A  D   I  T     +       P  ++  L         
Sbjct: 160 --LARVKVTPITDVHTLGQAHRDGVAILGTFLEGEDILAHHSTPLFSSPYL--------- 208

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNP----LFPSLNISQAVLLMV 165
             +I G E  G++          ++ P +        SLN++ A  +++
Sbjct: 209 --LIMGNEGQGISPTVAQYVTQRLTIPSSSPDGKQVESLNVAAATAIVL 255


>gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C150]
 gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C150]
          Length = 247

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 18/176 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           ++    +++      ++IL       N G + R      +T + +   R    +     +
Sbjct: 87  LSDIMDKVEQEENPLILILDGLNDPHNFGSILRTADATQVTGVIIPKHRAVGVTPVVAKT 146

Query: 61  SANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S  A   I   RV +    L +      +I+ T                     ++   +
Sbjct: 147 STGAVEHIPIARVTNLSQTLDKLKEAGFWIFGT--------------DMDGTPSHKWNTA 192

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G  + +I G E  G++       + +I+ P++    SLN S A  ++++E   N +
Sbjct: 193 G-RLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMYEVYRNRL 247


>gi|221194652|ref|ZP_03567709.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
 gi|221185556|gb|EEE17946.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
          Length = 292

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 16/155 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRV-----FSNLKEA 80
           N+G V R     ++    L+ P      + +A   S      +    V        L   
Sbjct: 144 NVGAVFRNAAALDV-DAVLLAPHCADHLARRAIRVSMGTVFQVPWAHVPEELWVEGLMHM 202

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           + +  FI  TTA    +    L          +R  S     + FG E +GL    I   
Sbjct: 203 LHEEGFI--TTALALTDTAVPLT-------DIKRTSSLGKHALFFGSEGYGLDQRTIEAC 253

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +     P++    SLN++ +  +  WE       +
Sbjct: 254 DQTAIIPMSHAVDSLNVAASSAVAFWELFARKEQA 288


>gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 247

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 11/154 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL      +N G + R      +  + +   R    +     +S+ A   +  ++V SNL
Sbjct: 102 ILDHLTDPQNFGAIIRTADAVGVDGVIIPKRRSVDVNPTVMKASSGAAEHVPIIKV-SNL 160

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           ++          T ++ +  +  +L                  + ++ G E  G++    
Sbjct: 161 RQ----------TISKLKEQWIWILGTDIDGDRGIFEENYNIPLALVVGNEASGMSPLVK 210

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + I + P+     SLN S A  ++++E    
Sbjct: 211 KECDFIANIPMIGRVNSLNASVATAVVLYEIYRQ 244


>gi|288920452|ref|ZP_06414761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
 gi|288348181|gb|EFC82449.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
          Length = 288

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 12/142 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+     +    L++PR   P   ++   S      +   R+      A++ L 
Sbjct: 143 NLGAIFRSAAGLGM-DAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEP-WPAALSLL- 199

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  R        L P   A  L          V ++ G E  GLT++ +A +    
Sbjct: 200 -------RTAGFEVVALTPAPDAQELTAAWAAPDDRVAVLLGTEGSGLTDQVLATATRRA 252

Query: 145 SFPVNPLFPSLNISQAVLLMVW 166
             P+     SLN++    +  +
Sbjct: 253 RIPMAHGVDSLNVAATAAIACY 274


>gi|237802828|ref|YP_002888022.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274062|emb|CAX10856.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 269

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 26/157 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-SNLKEAI 81
           +   NIG + R      +  + L +P     +     SS     ++ ++ V+ ++LKE +
Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG---IVFTMPVWQASLKEVL 182

Query: 82  ADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             +H     ++ TT            P       ++     Q + ++FG E+ GL+ + +
Sbjct: 183 DLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPMVVVFGSEKDGLSPDWL 228

Query: 138 --ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +  N  I+ P+     SLN+S +V  + +E +   
Sbjct: 229 NGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263


>gi|228472473|ref|ZP_04057235.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276158|gb|EEK14905.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 264

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 22/156 (14%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P+   NIG + R      +  + + NP+    +     SS      +      ++ +E +
Sbjct: 122 PEKPGNIGALLRTADAAGVDAVCIANPKTDMYNPNVIRSSVGTLFTVPIAT--ASTEELL 179

Query: 82  -----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                 D     A                 +A V  + +       I  G E  GL+   
Sbjct: 180 HFLAQEDFTLYCAA---------------LSASVPYDSVSYKGRTAIAVGTEDVGLSPLW 224

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  S+  I  P+     S+N+S +  ++++E +   
Sbjct: 225 LEASSQNIIIPMRGKIDSMNVSVSAAVLIFEAVRQR 260


>gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays]
          Length = 345

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 14/160 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G + R+   F    + L+       +EKA  ++  A   +    + S
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLP---IVS 239

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV---LNERIFS---GQNVGIIFGRER 129
                  DLH +  T  R +       +  +A+     L+  +      +++ ++ G E 
Sbjct: 240 GT---WHDLHALV-TKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEG 295

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            GL+ E +     +++ P+   F SLN+S A  + ++   
Sbjct: 296 NGLSAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334


>gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
           sp. YIT 12067]
          Length = 248

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 18/157 (11%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FS 75
           L + Q  +N+G + R+     +  + +   R    +      SA A   +  V++     
Sbjct: 104 LDELQDPQNVGALIRSADAAGVHGVLMPRRRSCPLNAVVAKISAGAVEYVPVVQIGNIAQ 163

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            ++E      ++                     +       SG  V ++ G E  GL   
Sbjct: 164 TIEELKQRGCWVVG--------------ADMDGVDFYAANMSGPIV-LVIGAEGRGLGRL 208

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++S P+N    SLN S A  ++++E +   
Sbjct: 209 VKQKCDDVVSIPMNGGVNSLNASAAGAVLMYEVVRQR 245


>gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
           SS3/4]
          Length = 248

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 12/154 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R         + +   R    +     +SA A       +V +N+   I 
Sbjct: 107 EDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKV-TNMAATIE 165

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL          +     V A  +       R+     +G++ G E  G++       + 
Sbjct: 166 DL---------KKRGIWFVCA--DMGGESMYRLNLTGPIGLVIGNEGEGVSRLVKEKCDM 214

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I S P+     SLN S A  ++ +E +   +  +
Sbjct: 215 IASIPMKGDIDSLNASVATGVLAYEIVRQRLAKA 248


>gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4]
          Length = 249

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           IIL + +   N+G + R         + +   R    +     +SA A       +V + 
Sbjct: 101 IILDNIEDPHNLGAIIRTANQAGAHGVVIPKHRAVGLTATVAKASAGAINYTPVAKVTNI 160

Query: 76  --NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++E     + F+ A                +        +    ++G++ G E  G+
Sbjct: 161 SKTMEELKEQGMWFVCA----------------DMGGTTMYDLNLTGSIGLVIGNEGHGV 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++      + I S P+     SLN S A  ++ +E +   I  S
Sbjct: 205 SDLVKKNCDMIASIPMYGDIDSLNASVACGVLAYEVVRQRINKS 248


>gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
           15897]
          Length = 241

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79
           +   N+G + R      +  + +   R    +      S  A   +   +V +    L  
Sbjct: 100 EDPHNLGAIIRTCDAIGVDGVIIGKKRSVGLNATVAKVSTGAIDHVPVAQVTNLSRTLDS 159

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
              +  ++        +N     A      ++           ++ G E +G++      
Sbjct: 160 LKKEGFWVVGC---ELDNSTDYRAVDYNMPLV-----------LVIGSEGFGISRLVKEH 205

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  +  P+     SLN S A  +++++   + 
Sbjct: 206 CDMNVILPMVGHVNSLNASVATAVLLYQVYNSR 238


>gi|323466957|gb|ADX70644.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           helveticus H10]
          Length = 186

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D   VR
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDVR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +L   +         T    +    +        V  +     +N   +FG+E  GL
Sbjct: 60  RHDDLNAFLK--------TLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
               +    +  +  P++      N+S +V +++ E +      + K          K +
Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMKTAHHYENDKLKDD 171

Query: 192 LLS 194
              
Sbjct: 172 YDR 174


>gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 252

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 20/155 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            +N+G + R+   F +  + L   R           SA A   +    V  N+  A+  L
Sbjct: 114 PQNLGAILRSADQFAVDLVVLPERRSAGDGAVVDKVSAGASLHVPRS-VVPNIPRAVEGL 172

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                ++Y                 +              V ++ G E  G+        
Sbjct: 173 KKAGFWVYGA---------------DMGGGSAWNFSLKGKVAMVLGAEGRGIGRLVRERC 217

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + IIS P      S N+S A  ++++EC       
Sbjct: 218 DEIISIPSRGHIDSFNVSVAGGILLYECRRQQWSD 252


>gi|161507184|ref|YP_001577138.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571]
 gi|260102476|ref|ZP_05752713.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|160348173|gb|ABX26847.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571]
 gi|260083713|gb|EEW67833.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|328461854|gb|EGF34076.1| hypothetical protein AAULH_03893 [Lactobacillus helveticus MTCC
           5463]
          Length = 186

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D   VR
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDVR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +L   +         T    +    +        V  +     +N   +FG+E  GL
Sbjct: 60  RHDDLNAFLK--------TLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
               +    +  +  P++      N+S +V +++ E +      + K          K +
Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMKTAHHYENDKLKDD 171

Query: 192 LLS 194
              
Sbjct: 172 YDR 174


>gi|289672601|ref|ZP_06493491.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 129

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 20/139 (14%)

Query: 44  RLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNF 98
            +V P+D     +   R  +  A  VI  V V +    L++      ++  T        
Sbjct: 2   VIV-PKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG------ 54

Query: 99  KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
                  EA + L ++  +G  + II G E  G+        + ++  P+     SLN+S
Sbjct: 55  -------EAEVELYQQDLTGPTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVS 106

Query: 159 QAVLLMVWECMENSIVSSE 177
            A  + ++E +    V + 
Sbjct: 107 VATGVCLFEALRQRSVKAA 125


>gi|242046186|ref|XP_002460964.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor]
 gi|241924341|gb|EER97485.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor]
          Length = 354

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 70/200 (35%), Gaps = 17/200 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+    R+     +  + +++          R  S  A+  +D + ++++  E      
Sbjct: 169 GNVSAAFRSADALGVQSVHVISCDSSKRYRDNRHVSMGAEKWLD-IEIWNSPAE------ 221

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                +A  +  ++          V    +   Q   I+ G E  G++++ + LS+   S
Sbjct: 222 ---CFSALKKRGYRIATTYLGTDSVCVYDMDWSQPTAIVVGNELRGISDDALELSDLHCS 278

Query: 146 FPVNPLFPSLNISQAVLLMVWEC---MENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
            P+  +  S N+S A  +++        + +      + E+N          +L + E +
Sbjct: 279 VPMKGMVDSFNVSVAAGILMHHAVCDRVSRLGHHGDLLPEENRILLA---EFYLRHREST 335

Query: 203 LEERGYFRPVEKKKKMLDDL 222
                +     K +  +  L
Sbjct: 336 -ATIVHEYAKRKAENFMARL 354


>gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 293

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 63/183 (34%), Gaps = 33/183 (18%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
            L+       I L   +   N+G V R     +   + L+       S +   ++  +  
Sbjct: 130 SLKPKGNDVYIALDRVRDPGNLGTVIRTADAVSAKGVILIGDTTDPYSLETVRATMGSVF 189

Query: 65  ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                       ++  +  S L         +  T  +   +++++              
Sbjct: 190 SMPLYKVSEADFLNWRKGVSGL---------VVGTHLKGAVDYRTI-------------P 227

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ + V ++ G E+ GL +      + +   P      SLN++ A  +M++E   +++  
Sbjct: 228 YANKPVVLMMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRRDALTL 287

Query: 176 SEK 178
            E+
Sbjct: 288 DER 290


>gi|29830900|ref|NP_825534.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29608013|dbj|BAC72069.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 249

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 20/168 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +     PV++L +P+   N G V R    F  T +      D W     R  +      +
Sbjct: 102 RTPRSAPVVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG-----L 156

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                   L                        +   +        +    +  + FG E
Sbjct: 157 HFATAVERL---------------TVDELPPGPVFALDPEGDDIRGLKLPDDAVLAFGSE 201

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           R GL+ E  A ++ +++ P+ P   S N++ +V + ++         +
Sbjct: 202 RTGLSAELRARTDHLVALPMRPQVSSYNLATSVAMTLFHWSATGGAPA 249


>gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
 gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
          Length = 240

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 23/150 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84
           NIG + R+   F++  + L  P+D  P+E      ++     +I  ++V  NL+  +  L
Sbjct: 108 NIGAIIRSAAAFDINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVI-NLRSCMNYL 164

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +I   T    + F              +++ S + V ++FG E  G+        
Sbjct: 165 KKHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRKLVAETC 210

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + +   P++    SLN+S A  ++     +
Sbjct: 211 DYLAKIPISQRVESLNVSNAASIIFHSLHK 240


>gi|78185144|ref|YP_377579.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
 gi|78169438|gb|ABB26535.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
          Length = 229

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                + G E+WGL+++   L +  +  P+  +  SLN+S A   +++E +     +   
Sbjct: 114 GPTAFVLGAEKWGLSDQARDLMDEALFIPMRGMVQSLNVSVATATLLFESLRQRQAAGVA 173

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEE 205
               +   A         ++ +  L E
Sbjct: 174 PSHGEGLTA---------EHYQQLLVE 191


>gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 248

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKE 79
             N+G   R      + Q  +V P+D     +   R  +  A  VI  V V +    L++
Sbjct: 108 PHNLGACLRTADAAGV-QAVIV-PKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEK 165

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++  T                 A     ++       ++ G E  G+       
Sbjct: 166 LQQRGLWVVGTAG--------------EADKTLYQLDLTGPTVLVMGAEGKGMRRLTREH 211

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +   P+     SLN+S A  + +++ +   
Sbjct: 212 CDFLARLPMAGSVSSLNVSVATGVCLFKILRQR 244


>gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
 gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
          Length = 290

 Score = 53.1 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 28/156 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+     +    L+ PR   P   ++   S      +   R+            
Sbjct: 153 NVGAIFRSAAALGV-DAVLITPRCADPLYRRSIRVSMGTVFQVPWARI------------ 199

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER---------IFSGQNVGIIFGRERWGLTNEE 136
                T   ++         E+A +  +              + + +I G E  GL+   
Sbjct: 200 -----TRWPKDLEILHEHGFESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHT 254

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +A +   +  P+     SLN++ A  +  WE    S
Sbjct: 255 LAQTKHTVMIPMTHGVDSLNVAAASAVAFWETRLRS 290


>gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
           R2A130]
 gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
           R2A130]
          Length = 287

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 16/161 (9%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRV 73
            +++L       N+G + R+     +    LV  R         + S++ A  ++D + +
Sbjct: 135 IILVLDQVTDPHNVGAILRSAVAMGVKT-VLVTSRHQSSETGVLAKSASGAVDMVDMLAI 193

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                +L E       +    +           P E    L++   S   V ++ G E  
Sbjct: 194 RNLSKSLDELREHRFAVIGLDSEG---------PLEVQETLDDLKPS--KVALVLGAEGK 242

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL  +      A+    +     SLN+S A  L ++     
Sbjct: 243 GLREQTREACTALARLDMPGPIKSLNVSNAAALSLYLVRAA 283


>gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
 gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
          Length = 265

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 15  PVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVR 72
           P+++L+       N+G V R+   F   +  +   R   P   A + +++ A      +R
Sbjct: 113 PLVVLLDRVTDPHNVGAVLRSAEVFG-ARAVIAPARHSAPETGALAKTASGALERQPYLR 171

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI---FSGQNVGIIFGRER 129
           V  NL +A+ +L                +L     A V   +       + +G++ G E 
Sbjct: 172 VV-NLADAMQELQ----------AMGYVLLGLDGEAEVTLAQAVAEAGTRPIGLVLGAEG 220

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            GL +      + ++  P    F SLN+S
Sbjct: 221 PGLRDRTRETCDRLVRIPAQGGFGSLNVS 249


>gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
           CH34]
 gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
           CH34]
          Length = 247

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 21/157 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS---NLKE 79
             N+G   R           ++ P+D      A  +  ++ A   +  + V +    L+E
Sbjct: 107 PHNLGACLRVADGAGAH--AVIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRE 164

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++  T          V                     I+ G E  G+       
Sbjct: 165 LQERGIWVIGTADGTEKALYDVDL--------------KGPTAIVMGAEGEGMRRLTRET 210

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + +++ P+     SLN+S A  + ++E +    +  
Sbjct: 211 CDELVAIPMAGGVESLNVSVASGVCLYEAVRQRRLPR 247


>gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
 gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
          Length = 273

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E + S   + II G E  GL  E I   +  +  P+     SLN++ A  +  W+  + 
Sbjct: 214 EALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFWQLAKR 272


>gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4]
 gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
 gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22]
 gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4]
 gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
 gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22]
          Length = 253

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +     N+G + R         + L        + K + S   +   I   ++  N
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHI---QIVQN 168

Query: 77  -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + EAI+             N     ++  +              + ++ G E  G + +
Sbjct: 169 PILEAISSF---------KENGIPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKD 219

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I  ++  I  P+     SLN + A  +M++
Sbjct: 220 VIETADKKIYIPIKGKAESLNAAVAAGIMIY 250


>gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 242

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N+G + R     N+  + +   R    +     +S  A   I   R
Sbjct: 94  NPLLLILDGLTDPHNLGSILRTADATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPISR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +I+ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWIFGT--------------DMQGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G++       + +IS P+N    SLN S A  ++++E   N +
Sbjct: 199 KGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNRL 242


>gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
 gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
          Length = 268

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R+R      L P  +A  L E   +G+ V ++ G E  GLT + + +++     P++   
Sbjct: 189 RDRGFQLISLTPNPSAPTLAE-AMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGT 247

Query: 153 PSLNISQAVLLMVWE 167
            SLN++ A  +  +E
Sbjct: 248 DSLNVATAAAMAFYE 262


>gi|294155366|ref|YP_003559750.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291599973|gb|ADE19469.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 243

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 29/161 (18%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLR-----LVNPRDGWPSEKARSSSANADCVIDS 70
           ++ L D Q   NIG + R   +F++  L      + NP+           ++       +
Sbjct: 103 IVFLDDLQDPGNIGTIIRLCKSFDIDTLIVKNFDIYNPKC--------LRASQGSFFKTN 154

Query: 71  VRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +       E   +    F   +T  ++            A  L    F  ++V ++ G E
Sbjct: 155 IVQVDKYDELSKLMSKDFSIISTLLDKE-----------ATELKNFTFPKKSV-LVLGNE 202

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             G++   I LS   +  P++  F SLN++    +++ +  
Sbjct: 203 GNGISQNAIDLSKHKVYIPIS--FESLNVATCAAIILNKWR 241


>gi|169630781|ref|YP_001704430.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus ATCC
           19977]
 gi|169242748|emb|CAM63776.1| Probable tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus]
          Length = 153

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 22/148 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-IDSVRVFS 75
           I+  +P++  N G   R +      +L LV P   +   +A+   A  D   + SV V  
Sbjct: 4   ILFHEPRIAPNTGNAIRMVAGTGC-ELHLVQP--LFDLSEAKVRRAGLDYHDMASVTVHE 60

Query: 76  NLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           NL  A   L    +YA TA               A V    I       ++FG E  GL 
Sbjct: 61  NLSAAWKTLKPQRVYAFTA--------------HASVTYTDIAYQPGDVLLFGPEPTGLD 106

Query: 134 NEEIALSNAI--ISFPVNPLFPSLNISQ 159
            E +A  +    +  P+ P   SLN+S 
Sbjct: 107 AEVLADPHITEKVRIPLLPGRRSLNLSN 134


>gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
           str. Illinois]
 gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
           str. Illinois]
          Length = 243

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 67/175 (38%), Gaps = 34/175 (19%)

Query: 4   YAPQLQNSAKG-----PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
             P+L++  K       V+IL       N+G + R+   F +    +V  +   PSE + 
Sbjct: 79  SQPELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAFGVD--AIVVKQRHSPSETSV 136

Query: 59  --SSSANADCVIDSVRVF--SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIV 110
              +++ A   ++S+ V   +NL  AI  L     F YA      +    +  P      
Sbjct: 137 IAKTASGA---LESIPVCTIANLTNAIKILQENGYFCYAMDGGASSKLTEIRFP------ 187

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL--FPSLNISQAVLL 163
                     V  + G E  G+++      +  +S P+     F S+N+S A  +
Sbjct: 188 --------NKVAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAI 234


>gi|37676836|ref|NP_937232.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37201380|dbj|BAC97202.1| predicted rRNA methylase [Vibrio vulnificus YJ016]
          Length = 173

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 36/179 (20%)

Query: 13  KGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS----ANAD- 65
             P +I  L +P+   N+G V RA           V       S  AR  +    ++   
Sbjct: 3   TEPTVIIGLHNPKSPTNVGAVMRAA---GCYNATQVRYNGTRYSRAARFQTDTQNSHERI 59

Query: 66  CVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +++   + ++L    E +  +  +   TA         + P              +   
Sbjct: 60  DLLEMEDLTASLDGDVEIVC-VELVVGATA-----LPHFVHP--------------EKAI 99

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            +FG E   L  E +  ++ ++  P +     +N++  V +++++ +  ++ S + + +
Sbjct: 100 YLFGPEDGSLPQEVVDKAHHVVYIPTHGC---MNLAATVNVVMYDRLAKTLDSIDDHAQ 155


>gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
           2638]
 gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
           2638]
          Length = 196

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 15/171 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R+   F +  + L      WP E A+ SSA+    ++  +           +
Sbjct: 34  PHNVSAILRSCDAFGIYGIHLYYTVSQWP-ELAKKSSASGKKWVERTKHTD-------PV 85

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             +     R++          E A  L +   S +   +I   E  G   E   L    +
Sbjct: 86  KMVGGL--RDQGYQVLRTGFSETARPLMDFDLS-KPSAVILSNEHSGTAPELAELVPDEV 142

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
             P+  +  S N+S A  L+++            +        T  E+   
Sbjct: 143 YIPMQGMIQSFNVSVAAALILYHGFSQRFAKGMYDNPSF----TPEEMEKL 189


>gi|270285622|ref|ZP_06195016.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 104

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 17/102 (16%)

Query: 73  VFSNLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V  +L+EA+  +    I+  T +  + +     P +                 IFG E  
Sbjct: 11  VVDSLEEALRGIPREKIFCLTTKGSSYYGERELPLDG--------------TYIFGAESR 56

Query: 131 GLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL    + A S+  +  P+     SLN++ +V ++++E    
Sbjct: 57  GLPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 98


>gi|325954534|ref|YP_004238194.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323437152|gb|ADX67616.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 257

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            I+ G E  GL++     S+ +I  P+     SLN+S A  + V+E +   +
Sbjct: 206 AIVLGTEATGLSDFWADESDVLIKIPMLGKVDSLNVSNAAAICVYEAVRQRL 257


>gi|307720229|ref|YP_003891369.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306978322|gb|ADN08357.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 250

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 13/150 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L   Q  +N+GM+ R+    N+  + L        S     +SA     +  +   + 
Sbjct: 111 IALDGIQNPQNLGMIIRSCAAGNIDGIILPKKNSAKISPLVVKASAGTLFKLP-IYFCNT 169

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+E +                   +      A      I   +    + G E  G+++E 
Sbjct: 170 LQEVL------------TEQQEAKIYTLSSYAKTTIYDIQESEKTIYVLGNENEGVSHEV 217

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             L N  +S P+N    SLN++    L+ +
Sbjct: 218 AKLCNNSVSIPMNRGVESLNVAVTASLIAF 247


>gi|302337050|ref|YP_003802256.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301634235|gb|ADK79662.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 229

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 24/170 (14%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+   +   ++L D     N   V R+   F +  + ++  R+ +    +   +      
Sbjct: 30  LEERTRYITVVLEDIYQPHNASAVLRSCEGFGIQDVHVIENRNRFT--ISSGVALGTSGW 87

Query: 68  IDSVRVFS-----NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +D  R         LK A+ +L      I AT+            P    I L +   S 
Sbjct: 88  LDIHRYREEGAGNTLK-AVHELKAKGYRIVATS------------PHAQDINLEDFDISA 134

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                +FG E  G++ E +AL++  +  P+     S NIS +  +++   
Sbjct: 135 GKSAFLFGNELEGVSQEAMALADEFMKIPMRGFVESFNISVSCAIVLHHL 184


>gi|297807561|ref|XP_002871664.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317501|gb|EFH47923.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 350

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            NI    R+     +  + +V+          R  S  A+  +D +  +   KE    + 
Sbjct: 167 GNISAAFRSADALGIQSVHVVSCGSSKRYNGNRHVSMGAEKWLD-IEFWDTPKECFKVLK 225

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +     ++  +                I+ G E  G+ +E + LS+ 
Sbjct: 226 SRGYRIATT----HLGMDTVSIYDM--------DWSCPTAIVVGNEGRGICDEALELSDL 273

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
             S P+N +  S N+S A  +++ 
Sbjct: 274 RCSIPMNGMVDSFNVSVAAGILMH 297


>gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
           acidilactici 7_4]
 gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
 gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
           acidilactici 7_4]
 gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
          Length = 251

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 18/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           V+IL   +   N+G + R      +  + +   R    +     +SA A   +  V+V  
Sbjct: 104 VVILDGIEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVNN 163

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             + LKE      +I+ T               + A     R  +   VG+I G E  G+
Sbjct: 164 LVNTLKELKDRGLWIFGT---------------DMAGTDYRRWDATGPVGLIIGNEGKGM 208

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + +++ P+     SLN S A  L++++   + 
Sbjct: 209 ARLTKENVDEMLTIPMVGDIQSLNASVAAGLLIYQGYSSR 248


>gi|255038542|ref|YP_003089163.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
 gi|254951298|gb|ACT95998.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
          Length = 178

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 13/173 (7%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + + S K P VI+L + +   NIG   R    F   ++ L       P  +   S+  A 
Sbjct: 16  EFRESEKFPLVIVLDNIRSLNNIGSFFRTADAFRAEKIVLCGYTQQPPHREITRSALGA- 74

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGI 123
              +    +     A+       A  A     +      +    VL +     +G     
Sbjct: 75  ---EMAVAWEKNPSAVD------AVNALKSQGYNVWCVEQAEGSVLLQDFEPAAGDPYAF 125

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +FG E  G+ +E IA S+  +  P      S N+S +  +++W+ +   I   
Sbjct: 126 VFGNEVEGVADEVIAASDGCLEIPQFGTKHSFNVSVSAGIVLWDYIRKKITEK 178


>gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
 gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
          Length = 250

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70
           I+L + +   N+G + R         + +   R    +     +SA A        V + 
Sbjct: 105 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 164

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +   +LKE    L F+ A                     + +   +G  +G+I G E  
Sbjct: 165 AKTMESLKE--KGLWFVCA---------------DMGGEEMYDLNLTG-PIGLIIGNEGE 206

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G++       +     P+N    SLN S A  ++ +E +   
Sbjct: 207 GVSRLVKETCDFTARIPMNGDIDSLNASVAAGVLAYEIVRQR 248


>gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 247

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 64/172 (37%), Gaps = 23/172 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANAD 65
           +Q      ++IL       N+G   R+          ++ PR      +   R  ++ + 
Sbjct: 90  MQCKTTPLLVILDGVTDPHNLGACLRSADAAGAH--IVIAPRNRSACLNGTVRKVASGSV 147

Query: 66  CVIDSVRVFS---NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             I  ++V +    L + +   + +I  T  +++              + N ++   + +
Sbjct: 148 DNIPFMQVTNLIRTL-QLLQKYNIWIIGTVMQSQRL------------IFNSKLT--RPL 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             + G E  G+        + +++ P+  +  SLN+S A  + ++E +    
Sbjct: 193 AFVMGSEGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLFEALRQRW 244


>gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
           DSM 5159]
 gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
           DSM 5159]
          Length = 261

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 67/182 (36%), Gaps = 10/182 (5%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            +A  L  + +  V++L   Q  +NI  + R      +  + L   R    +    ++SA
Sbjct: 89  DFATLLDPAPESIVLLLDHLQDPQNIATLLRTAEAAGVRGVVLPERRAAGITPAVVNASA 148

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  + + +NL  A+         T R    +   L P   A  L  R      + 
Sbjct: 149 GAVEHL-QITLVTNLARAVD--------TLREHGYWIVALEPGPNAQSLF-RAPLPLPLV 198

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           ++ G E  GL+   +  ++  +  P+     SLN + A  + ++E +   +        E
Sbjct: 199 LLVGAEGHGLSPVLLKRADVQVIIPMLGQIESLNAAVAGSIALYEIVRRLLGQESAEKTE 258

Query: 183 QN 184
             
Sbjct: 259 TR 260


>gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
 gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
          Length = 260

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 48/172 (27%)

Query: 20  VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           V+  Q   N+G + R                         +++A A+ V+ S        
Sbjct: 114 VETLQDPGNLGTMIRT------------------------AAAAGAEGVLLSSDSVE--- 146

Query: 79  EAIADLHFIYATTAR--------NRNNFKSVLAPKEAAIVLNERIFSGQ----------N 120
             + +   + AT  +          +    +   ++  I +   +   Q           
Sbjct: 147 --LENPKVLRATAGQWFRLPLSVAEDFQAELQHYRQQGIQVVATLPQAQSNYWDVDLTCP 204

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              + G E  GL+   +AL++  +  P+ P   SLN++ A  L+++E     
Sbjct: 205 TLFLLGNEGAGLSASVVALADRQVKIPLQPGVESLNVAIAAALLLYEAQRQR 256


>gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 289

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 14/172 (8%)

Query: 3   PYAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEK 56
           P   QL  SA+ P     V++L +     N+G   R+     +    LV P    P   +
Sbjct: 117 PSVVQLLTSAQPPQPTRRVVVLENLVDHTNVGAAFRSAAALGI-DAVLVTPSCADPLYRR 175

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLHFI--YATTARNRNNFKSVLAPKEAAIVLNER 114
           +   S      +   R    L+    D+  +     T  +    +  ++  + A  L   
Sbjct: 176 SVRVSMGTVFQVPWTR----LESWPGDIALLRDAGFTLASLALCEDSISLDDFAA-LPAL 230

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 + I+ G E  GL    IA S+  +  P++    SLN++ A  ++ W
Sbjct: 231 RGPDARLAIVMGTEGHGLGKHTIAASDYTVKIPMDHGVDSLNVAAASAVVFW 282


>gi|291240059|ref|XP_002739939.1| PREDICTED: TAR (HIV-1) RNA binding protein 1-like [Saccoglossus
            kowalevskii]
          Length = 1247

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
            N+G + R    F + QL L         +  +  S  A+  I    V ++   A+ D   
Sbjct: 1106 NLGGICRTCEIFGVGQLVL-ASLKYAEHKDFQGLSVTAEKWIPLREVKAS---ALKDYLL 1161

Query: 87   IYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                    R    +++  ++ A      +        ++ G ER G+  E I L +  + 
Sbjct: 1162 EV------RKEGYTLIGVEQTANSHCLTQYQFTDKTLLLLGNEREGIPVELIQLLDMCVE 1215

Query: 146  FPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             P   +  SLN+  +  L+VWE     ++ +
Sbjct: 1216 IPQLGVIRSLNVHVSGALLVWEYTRQQLLKA 1246


>gi|149173449|ref|ZP_01852079.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
 gi|148847631|gb|EDL61964.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
          Length = 251

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 17/145 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79
           Q   NIG + R    F +  + L   R    +      ++     +      +   ++ +
Sbjct: 109 QDPHNIGAIFRTAAFFGVRGIVLTKDRSAPINATVYDVASGGMEAVPFAVETNLSRSMTQ 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A     +I  T+              E A          +   ++ G E  GL    +  
Sbjct: 169 AKETGVWIMGTS--------------EHAEEDVSVYSQDRPWMVVIGNEEKGLRRLTLEQ 214

Query: 140 SNAIISFPVNPLFPSLNISQAVLLM 164
            + +       +  SLN S A  +M
Sbjct: 215 CDVVTRLTPTGIVDSLNASVAAGIM 239


>gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
 gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
          Length = 245

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 23/173 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L   A+  ++IL       N+G   R      +  + +   R    +      +  A   
Sbjct: 90  LSQHAQPLLLILDGVTDPHNLGACLRNADAAGVAAVIVPKDRSAPLTATVSKVACGAAET 149

Query: 68  IDSVRVFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +  VRV +      +L+E    + +I  T                 A     +      +
Sbjct: 150 VPLVRVTNLARTMRSLQE--QGI-WIAGTAG--------------EATHDIYQAKLDGPL 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            I+ G E  G+        + +I  P+     SLN+S A  + ++E +    +
Sbjct: 193 AIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRAL 245


>gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046]
          Length = 253

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 23/156 (14%)

Query: 17  IILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-----DS 70
           ++LVD  Q   NIG + R      +  + L        + K+  S+  +   I     D 
Sbjct: 111 VLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQGSHFHIPVVRGDL 170

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +    NL+   AD   ++ T+                  +  +++    +  +I G E  
Sbjct: 171 MEWVENLQ---ADGIRVFGTS--------------LDESISYKKVEPSDSFALIVGNEGS 213

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G+  + +A ++  I  P+     SLN++ A  ++++
Sbjct: 214 GINPQILAKTDQNIIIPILGGAESLNVAVATGILLY 249


>gi|313674753|ref|YP_004052749.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312941451|gb|ADR20641.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 231

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 14/164 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+N      ++L D +   N   + R+     +    ++   + +     R  S  A   
Sbjct: 29  LENRTDFIRVVLEDIRDPHNANAIIRSGECLGIQHYHIIENENVFKLG--RGVSRGAIKW 86

Query: 68  IDSVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +D  +   +     +A+ DL             +K V+          E +   Q + I+
Sbjct: 87  VDVHQYPESKTPTADALHDL---------KSQGYKIVVTSPNKEACAPEELALDQPIAIV 137

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            G ER G++ E  ++++  +  P++    S N+S A  +  +  
Sbjct: 138 MGNERDGISEEAKSMADEFVRLPMHGFTESYNVSVASGITFYSL 181


>gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
 gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
          Length = 223

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 11/144 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  + L        S K   S   ++  +        L++ +A
Sbjct: 87  QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHL------PVLQKDLA 140

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D+  +          F              +++   ++  II G E  G++ E ++L++ 
Sbjct: 141 DVIPVM-----KGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQ 195

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN+  A  ++++
Sbjct: 196 NVYIPMKGNAESLNVGVAAGIVLY 219


>gi|298530210|ref|ZP_07017612.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509584|gb|EFI33488.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 197

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 17/169 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRL--VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+  + R+   F +  + L  V        E  R SSA+A   +  +R   +  E + 
Sbjct: 35  PHNVSAILRSCDAFAVPDVHLLYVG---QPFPEVGRKSSASARKWVRRIR-HRDAGEMVQ 90

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        R     +S+  P+             +   +I G E  G+  +   +   
Sbjct: 91  RLEGQGLCLIRTGFGPQSISLPEWDFT---------RPTAVILGNEHSGVQEDLEQMVAQ 141

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            I  P+  +  SLN+S A  ++++E       +    ++E+  P  + +
Sbjct: 142 EIYIPMQGMVQSLNVSVAAAVILYEAFRQRHQAG--LLEERALPGDRQD 188


>gi|12045205|ref|NP_073016.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|255660268|ref|ZP_05405677.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|1723153|sp|P47588|TRML_MYCGE RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase MG346
 gi|3844929|gb|AAC71571.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma genitalium
           G37]
 gi|166078946|gb|ABY79564.1| RNA methyltransferase, TrmH family, group 2 [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 166

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 19/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R+   F    L L+ P   + ++K    +       D +++F +
Sbjct: 8   IVLFCPEIPNNTGNIVRSCTAFK-ANLHLIKPYGFFLNDKRMVRA--GLNCWDKIQLFEH 64

Query: 77  -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                  +A  +   I+  T         +    +    L            +FG+E  G
Sbjct: 65  KSWEHFLQATTENKTIWLLTKSGDKTPDQICMTNKLPNELY----------FVFGQETKG 114

Query: 132 LTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L    +       I  P+     S+N++ AV+ +++E  + 
Sbjct: 115 LPKTIMDNFKQNQIRIPIWNSVRSINLANAVVCILYEYSKQ 155


>gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 240

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R         L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++       +  T               EA + L ++  +G  + II G E  G+
Sbjct: 159 LARTLEKLQQRGLGVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                   + ++  P+     SLN+S A  + +
Sbjct: 205 RRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 237


>gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 325

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 16/172 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            LQ      ++ L       N+G V R+   F    + +   R    +  A   SA A  
Sbjct: 167 SLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAA 226

Query: 67  VIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   R   +   L+EA    +F+                       L     +   + +
Sbjct: 227 RVPVARATNLVRALEEAKRAGYFVVGLDGGGD-------------APLRGLSLADGPLVV 273

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + G E  GL+       + I+S P+     SLN + A  + ++E       +
Sbjct: 274 VTGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAKA 325


>gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 250

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRV- 73
           I+L   +  +N+G + R      +  + L  P       +     +SA A   ++ +++ 
Sbjct: 98  ILLDGVEDPQNLGAIIRTAECAGVHGIVL--PLHHSVKVTPAVGRASAGA---VEHMKIA 152

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +NL  AI +L          +     ++     A      +     + ++FG E  G+
Sbjct: 153 LVTNLVRAIEEL----------KQGGLWIVGADAMANHTYFEVSLAAPLALVFGGEGRGI 202

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                   + ++S P+     SLN+S A  L+ +E +        
Sbjct: 203 RRLVREHCDILVSIPMFGQLNSLNVSTACALVTFEVLRQRYQDGG 247


>gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium BBFL7]
 gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium BBFL7]
          Length = 244

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA---- 82
           N G + R      ++ + +        +     +SA A   I   +V S++K+A+     
Sbjct: 109 NFGAIIRTAECTGVSAIIIGESGSAPINPATIKTSAGAVFNIPICKV-SHIKDAVFLMKA 167

Query: 83  -DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  I AT               E +  L   I   Q++ ++ G E  G+    + + +
Sbjct: 168 YGITTIGAT---------------EKSTKLVYDIDLNQSIALVMGSEERGINPSTLKVID 212

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             I  P+     SLN+S A   +++E +   
Sbjct: 213 EPIKLPMKGDIASLNVSVACGAILYEIVRQQ 243


>gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus
           EPS]
 gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           EPS]
          Length = 248

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 27/165 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADC------VID 69
           +L       N+G   R           ++ P+D      A  +  ++ A        V +
Sbjct: 103 VLDGVTDPHNLGACLRVADGAGAH--AVIAPKDHAAGINATVAKVASGAAETVPYFMVTN 160

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R  + LKE      +   T+              + A     +    + + ++ G E 
Sbjct: 161 LARTMNELKE---RSIWCVGTS--------------DDAPGTIYQSDLKRPLALVLGAEG 203

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+        + ++S P+     SLN+S A  + ++E M     
Sbjct: 204 DGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMRQRGA 248


>gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 234

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L   AK  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELVGKAKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y        N+     P                
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEANINYNEEDYPD--------------K 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 VVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|326797288|ref|YP_004315108.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
 gi|326548052|gb|ADZ93272.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
          Length = 256

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 29/176 (16%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           M    P+  N+     + L + Q   N+G + R++  F   +  L++P    P + K   
Sbjct: 104 MAAIQPEQNNTLA--AVYLHEIQDPGNLGTILRSLAWFGGVR-CLLSPGSVDPFNPKVIR 160

Query: 60  SSANADCVI--DSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           SS  A   +  +       L E  A                + + + +P+  A       
Sbjct: 161 SSMGAVFHVPMELDVSIDTLPERFAKIGC---------LDMDGEPLSSPEFKACD----- 206

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECME 170
                   IFG E  G+  +++   NA   + P   L  SLN++ AV L ++E   
Sbjct: 207 ------CYIFGNEARGVPRDKLEALNAKPFTIPGVGLIESLNLATAVNLSIYERQR 256


>gi|153951021|ref|YP_001397411.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938467|gb|ABS43208.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 227

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +           R+SS  A  +   + + +
Sbjct: 85  IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRASSGAALDLP--IVISN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KINNGKKV-LVLGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|15605128|ref|NP_219913.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789134|ref|YP_328220.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|3328830|gb|AAC68000.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
 gi|76167664|gb|AAX50672.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|296435924|gb|ADH18098.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9768]
 gi|296436851|gb|ADH19021.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11222]
 gi|296437785|gb|ADH19946.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11074]
 gi|297140285|gb|ADH97043.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9301]
 gi|297748533|gb|ADI51079.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-EC]
 gi|297749413|gb|ADI52091.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-LC]
          Length = 269

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 36/162 (22%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76
           +   NIG + R      +  + L +P     +     SS           VF      ++
Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177

Query: 77  LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           LKE +  +H     ++ TT            P       ++     Q + ++FG E+ GL
Sbjct: 178 LKEVLDLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPMVVVFGSEKDGL 223

Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + + +  +  N  I+ P+     SLN+S +V  + +E +   
Sbjct: 224 SPDWLNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263


>gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 246

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 60/153 (39%), Gaps = 25/153 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRVFSNLKEAI--- 81
           N G + R      ++ + +  P+ G  S  A    +SA A   +   +V  NL +A+   
Sbjct: 110 NFGAIIRTAECAGVSGIII--PKRGSVSITADTVKTSAGAVFRVPICKV-ENLVDAVYYL 166

Query: 82  --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             + +  + AT          +L  ++ ++             I+ G E  G++   + +
Sbjct: 167 QGSGIRVVAAT-----EKTNQLLYAEDFSV----------PTAIVMGAEDVGISPAVLKV 211

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++    P+     SLN+S A  + ++E +   
Sbjct: 212 VDSKAKLPMKGEIGSLNVSVACAVFLYEVVRQR 244


>gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
           2522]
 gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
           2522]
          Length = 250

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 29/155 (18%)

Query: 23  QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           Q   N+G + R      +  + L    V+P     + K   ++  +   +   R+  +LK
Sbjct: 116 QDPGNVGAIIRTADAAGINGVVLGEGTVDP----FNGKVIRATQGSIFHLPVQRM--DLK 169

Query: 79  EAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           EA+         ++ T+ +                     I    N  +I G E  G+ +
Sbjct: 170 EAVQICKEKNIPVFGTSLQGSTYN---------------AIQPQDNFALIVGNEGSGVED 214

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             + +++  +  P++    SLN+S A  ++++   
Sbjct: 215 TLLEMTDQNLYIPIHGKAESLNVSIATGILLYHLR 249


>gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
 gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
          Length = 247

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 15/171 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           +  +    +++L       N+G   R      +    +V P+D   S  A     +  A 
Sbjct: 90  VSQTDNPLLLVLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSASMTATVSKVACGAA 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  VRV           +      A        V    EA   + +   +G  + I+ 
Sbjct: 148 ETVPLVRVT----------NLARTMRALQEKGVWFVGTAGEATHDVFQSKLTG-PLAIVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  G+        + +I  P+     SLN+S A  + ++E +    +  
Sbjct: 197 GAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRALQG 247


>gi|313141621|ref|ZP_07803814.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313130652|gb|EFR48269.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 244

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 26/155 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD------CVID 69
           V++L       N+G + R+ +   +  + +      +  E    +S+ A        V +
Sbjct: 101 VLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIH-NFKQEGVLRASSGAMLGMPFCVVYN 159

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            + VF  LK+A  D   +  T+ + +N   S+ +                   ++ G E 
Sbjct: 160 PLDVFHELKQA--DFVLL-GTSLQGQNLPISLES----------------KKALVLGNEG 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            GL+ + +A  +  ++ P+   F SLN+  A  ++
Sbjct: 201 EGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAIL 235


>gi|310287371|ref|YP_003938629.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|309251307|gb|ADO53055.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
          Length = 292

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN--------- 76
           N+G + R+    ++    LV P  G P   +A   S      I   R+  +         
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRG 195

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+E  +      A    + +     L  +       E       + +IFG E  GL+   
Sbjct: 196 LEELRSLGFTTVAMALSDDSISLDELTRRLNNS--PESADHIGKLALIFGTEGDGLSRHT 253

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           IA ++  +  P++    SLN++ +  +  +
Sbjct: 254 IAGADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|291533010|emb|CBL06123.1| rRNA methylases [Megamonas hypermegale ART12/1]
          Length = 70

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             + ++ G E  G++       + I+  P+     SLN S A  ++ +E ++   + 
Sbjct: 14  GPLVLVIGSEGRGVSRLTKNACDFIVKIPMRGKVNSLNASNAAAILAYEVLKQRTLK 70


>gi|255348768|ref|ZP_05380775.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70]
 gi|255503308|ref|ZP_05381698.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70s]
 gi|255506987|ref|ZP_05382626.1| 23S rRNA methyltransferase [Chlamydia trachomatis D(s)2923]
 gi|289525445|emb|CBJ14922.1| 23S rRNA methyltransferase [Chlamydia trachomatis Sweden2]
 gi|296434997|gb|ADH17175.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/150]
 gi|296438717|gb|ADH20870.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/11023]
          Length = 269

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 36/162 (22%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76
           +   NIG + R      +  + L +P     +     SS           VF      ++
Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177

Query: 77  LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           LKE +  +H     ++ TT            P       ++     Q   ++FG E+ GL
Sbjct: 178 LKEVLDLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPTVVVFGSEKDGL 223

Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + + +  +  N  I+ P+     SLN+S +V  + +E +   
Sbjct: 224 SPDWLNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263


>gi|224418084|ref|ZP_03656090.1| hypothetical protein HcanM9_02289 [Helicobacter canadensis MIT
           98-5491]
 gi|253827413|ref|ZP_04870298.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
 gi|253510819|gb|EES89478.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
          Length = 228

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 26/155 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD------CVID 69
           V++L       N+G + R+ +   +  + +      +  E    +S+ A        V +
Sbjct: 85  VLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIH-NFKQEGVLRASSGAMLGMPFCVVYN 143

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            + VF  LK+A  D   +  T+ + +N   S+ +                   ++ G E 
Sbjct: 144 PLDVFHELKQA--DFVLL-GTSLQGQNLPISLES----------------KKALVLGNEG 184

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            GL+ + +A  +  ++ P+   F SLN+  A  ++
Sbjct: 185 EGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAIL 219


>gi|166154614|ref|YP_001654732.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|166155489|ref|YP_001653744.1| 23S rRNA methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335881|ref|ZP_07224125.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2tet1]
 gi|165930602|emb|CAP04099.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|165931477|emb|CAP07053.1| 23S rRNA methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 269

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 36/162 (22%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76
           +   NIG + R      +  + L +P     +     SS           VF      ++
Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177

Query: 77  LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           LKE +  +H     ++ TT            P       ++     Q   ++FG E+ GL
Sbjct: 178 LKEVLDLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPTVVVFGSEKDGL 223

Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + + +  +  N  I+ P+     SLN+S +V  + +E +   
Sbjct: 224 SPDWLNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263


>gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 289

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           EN+G + R      +  +   +        +A   S     ++   R      E      
Sbjct: 135 ENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELK---- 190

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                T + +      + P+ +A  L E      G  V ++ G E  GLT   + LS+  
Sbjct: 191 -----TLKEKGFRLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVR 245

Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167
           +  P++    SLN++ A  L  +E
Sbjct: 246 VRIPMSRGTDSLNVATAAALAFYE 269


>gi|256380914|ref|YP_003104574.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255925217|gb|ACU40728.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 235

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 22/160 (13%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
                P+++L +P+   N G V R      L    +V+  D  P        SA     +
Sbjct: 88  PDRTAPLVLLDNPRNLGNFGAVVRVAA--GLGASGVVSTGDVDPWHPTVLRGSAGLHYAL 145

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              RV      A+    F +     +      V  P                  + FG E
Sbjct: 146 PVARVDD--PAALEGELFAF---DADGEPVDRVRFPD--------------GAVLAFGSE 186

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           R GL+    A ++ ++S P+ PL  S N++ +V + ++  
Sbjct: 187 RHGLSERTRARADRVVSLPMRPLVSSYNLTTSVAMALYHW 226


>gi|189913162|ref|YP_001965050.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|189913499|ref|YP_001964727.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777838|gb|ABZ96137.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167781567|gb|ABZ99863.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 261

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARSSSANADCVIDSVRVFSNLKEAIAD 83
            ENIG + R    F +    L + +   P   ++   S  A   +   +  +NL ++I  
Sbjct: 120 SENIGSILRNAAAFGIKS-ILFDSKSASPYLRRSVRVSMGAIFQLQLAKT-TNLPDSIQ- 176

Query: 84  LHFIYATTARNRNNFKSVLA---PKEAAIVLN-----ERIFSGQNVGIIFGRERWGLTNE 135
                    R +    +++A   PKE +  L+     + I   +N+ +I G E  G+   
Sbjct: 177 ---------RLKERPTNLVALALPKENSHHLSKTKTIQEIGKLENLVLIVGNEANGIEEG 227

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +  S+ I   P+     SLN+S A+ + +
Sbjct: 228 VLDASDVIGYIPMQNNIDSLNVSHALAVAL 257


>gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49]
 gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49]
          Length = 263

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 17/165 (10%)

Query: 11  SAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             + P+I++ + P+   NIG + R     ++  + + NPR    +     SS        
Sbjct: 111 PKQNPLILIAEAPEKPGNIGALLRTADAAHVDAVLIANPRTDLYNPNIIRSSVG------ 164

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGR 127
              VF+N + A+A    I A     + N  S+ +   +E+     +   +G    I+ G 
Sbjct: 165 --CVFTN-QVAMASSEDIIAF---LKKNNISIYSAILQESQPYHTQDFTTG--CAIVVGT 216

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL+      S A I  P+     SLN+S A  ++++E     
Sbjct: 217 EATGLSQAWRDASTANIHIPMQGEIDSLNVSVAAAVLLFEAKRQR 261


>gi|116620879|ref|YP_823035.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224041|gb|ABJ82750.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 180

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 10/144 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G   R     ++ +L L       P      ++  A    ++   + +  EA   +  
Sbjct: 35  NVGSFFRTADAASVEKLYLSGITAQPPKSAITKTALGA----ENTVCWEHAWEARPLVEK 90

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                AR +    + +     A+ L +       V +IFG E  G+     AL +  +  
Sbjct: 91  -----ARAQGYEIAAVETSVHAVDLFDWTPR-FPVLVIFGHEVDGIRPAISALCDTHVRI 144

Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
           P+     SLN++ A  ++++E + 
Sbjct: 145 PMLGAKHSLNVATAGGVVIYELLR 168


>gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
 gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
          Length = 240

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 21/149 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+   F++  + L  P+D  P+E  + + +A     +  +   +NL+  +  L 
Sbjct: 108 NIGTIIRSAAAFDINAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLK 165

Query: 86  ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +I   T    + F              +++ S + V ++FG E  G+        +
Sbjct: 166 KHGFWIIGLTGSANDYF-------------TDKLISDKIV-LVFGSEDKGIRRLVAETCD 211

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            +   P++    SLN+S A  ++     +
Sbjct: 212 YLAKIPISQRVESLNVSNAASIIFHSLHK 240


>gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5]
          Length = 258

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 15/169 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++       V++L D Q   N G + R      ++ + L        + K   S+  + 
Sbjct: 101 EEVLAGKNPLVMVLEDLQDPGNAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSI 160

Query: 66  CVIDSVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             +  + V    +L++ + +           R+    +           ++         
Sbjct: 161 YRMPFLYVEDVVSLEKKLKE--------KGIRSFAAHL-----KGENSYDQESYKGGTAF 207

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G E  GLT++    ++ +I  P+     SLN + A  ++++E     
Sbjct: 208 FIGNEGKGLTDQAAEAADCLIRIPMCGKVESLNAAMASGILMYEAARQR 256


>gi|17945288|gb|AAL48701.1| RE14730p [Drosophila melanogaster]
          Length = 386

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 22/171 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSV 71
              ++  + +   N+G + R       +Q+ + +        KA            I   
Sbjct: 214 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 273

Query: 72  RVFSNLK-----EAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  L      EA  D H   A T  R R N +++       +        G +  +I 
Sbjct: 274 VTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGL--------GAHNLLII 325

Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++ E     N        I  P+     SLN++ A+ L+++E   
Sbjct: 326 GGESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRR 376


>gi|307331242|ref|ZP_07610366.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306883120|gb|EFN14182.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 253

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 22/161 (13%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +     PV++L +P+   N+G V R    F  T +      D W     RS +      +
Sbjct: 107 KRPRAAPVVVLDNPRNLGNVGAVVRLAAGFGATGVVTTGDIDPWHPNAVRSGAG-----L 161

Query: 69  DSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                   L  +A+                   +         +        +  + FG 
Sbjct: 162 HFATAVERLPGDAL---------------PEGPLYVLDAEGEDIRSVTIPD-DALLAFGS 205

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ER G++ E    +  +++ P+ P   S N++ +V + ++  
Sbjct: 206 ERHGISPELRKRATRLVALPMRPQVSSYNLATSVAMALFHW 246


>gi|269925611|ref|YP_003322234.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789271|gb|ACZ41412.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 180

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 29/183 (15%)

Query: 5   APQLQNSAKG---PVIILV----DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           A  L++  +G   P + LV    D +   N+G   R       +++ L       P    
Sbjct: 12  AKALKDFLRGVQRPEVDLVFLLQDLEDPVNVGAAFRIADGCEASEIILTGKTPTPPDSTI 71

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
                 A   I   R   +  EA+ +L                 +     AI + E    
Sbjct: 72  AGVGRGAHRRIPW-RYVEHADEALVELK---------------GMGYMACAIEVAEGAVP 115

Query: 118 ------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                    V ++ G E  G+T   +++ +  +  P+     SLN+  A+ ++ +  +  
Sbjct: 116 YYSLKYPDRVCLVVGHEYHGVTTRTLSVCDNAVYIPMYGKIKSLNVHVALAVVAFHVLHQ 175

Query: 172 SIV 174
            ++
Sbjct: 176 QLI 178


>gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
           29176]
 gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
           29176]
          Length = 271

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +R+   + + II G E  GL  + IA  +  +  P+     SLN++ A  +  WE   
Sbjct: 214 KRLREEKKLAIILGTEGDGLAEQTIAECDYTVKIPMTHGVDSLNVAAASAVAFWELGR 271


>gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B1 str. Okra]
          Length = 257

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +IIL + +   N G + R         + +   R+   +     +SA A   +   +V +
Sbjct: 108 IIILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTN 167

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                   ++ +     + +     +             +     + ++ G E  G++  
Sbjct: 168 --------INNVI---DKLKEKGIWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKL 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                +A++  P+     SLN S A  ++++E ++  + S 
Sbjct: 217 TKNKCDALVKIPMFGNITSLNASVAGGMLMYEILKQRMKSK 257


>gi|160946736|ref|ZP_02093939.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270]
 gi|158447120|gb|EDP24115.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270]
          Length = 234

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 14/150 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P+   N+G + R    F    + +++        K   +S  A   + +V +F  
Sbjct: 93  ILLCEPRDKGNLGTILRTALGFGFKNIAIID-GCDVFDPKTVRASMGAIFKM-NVEIFKT 150

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +E                              V  + +   +   ++FG E  GL N +
Sbjct: 151 FEEYKNTF-----------EENNIYSFILNKGSVSLKNVEIKKPFTLMFGNESHGLENFD 199

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +      +    +    S N+  A  + ++
Sbjct: 200 L-KGTTPVFIEQSEDIDSFNLPIASSIAMY 228


>gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis
           MR-1]
 gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis
           MR-1]
          Length = 246

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 49/159 (30%), Gaps = 19/159 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           IL       N+G   R      +  + +  P+D      A     +  A           
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTAVVSKVACGA------AETVP 152

Query: 76  NLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +          A T R         V    EA   L +    G  + I  G E  GL 
Sbjct: 153 LFQ------VTNLARTMRHLQEKGVWIVGTAGEADCELYQADLKG-PLAIAMGAEGKGLR 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + ++S P++    SLN+S A  + ++E +   
Sbjct: 206 RLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEAVRQR 244


>gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO]
          Length = 254

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 11/144 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  + L        S K   S   ++  +        L++ +A
Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHL------PVLQKDLA 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D+  +          F              +++   ++  II G E  G++ E ++L++ 
Sbjct: 172 DVIPVM-----KGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQ 226

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN+  A  ++++
Sbjct: 227 NVYIPMKGNAESLNVGVAAGIVLY 250


>gi|224534903|ref|ZP_03675472.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
 gi|224513843|gb|EEF84168.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
          Length = 218

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             + + FG E  GL+ E +  ++  +  P+     S NIS AV ++++  +
Sbjct: 127 NKMAVFFGTELTGLSAEVLGAADLCVKIPMYGFTQSYNISVAVAIVIYSLL 177


>gi|138897021|ref|YP_001127474.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
 gi|196249846|ref|ZP_03148542.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
 gi|134268534|gb|ABO68729.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
 gi|196210722|gb|EDY05485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
          Length = 245

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 17/175 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N   V R    F +  + +V  R  +   +  +    AD  +   R   ++K AI+DL
Sbjct: 64  PHNQAAVLRTAEAFGIQDVHVVTGRAPFSPNRLVTR--YADQWLTLHRQ-PDIKTAISDL 120

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   + +          E  I L+E +   +   ++FG E  G++ E + L++   
Sbjct: 121 --------KQQGYQVYASYLGEGTIPLSE-VNVSKPTVLLFGNEHSGVSEEALRLADGTF 171

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL 199
             P+     S NIS A  L +++  E +     +         +  E  +  +  
Sbjct: 172 VIPMYGFVQSFNISVAAALTLYDVTERARRQVGR-----RYYLSHEEKKTLYEQW 221


>gi|78189054|ref|YP_379392.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
 gi|78171253|gb|ABB28349.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
          Length = 184

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R   +  + ++ L       P ++   ++  AD  +      S  ++A   +  
Sbjct: 46  NVGSMFRTADSAGIERIILSGYTATPPRKEISKTALGADESVPW----SYTEDAYKTVRK 101

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           + A            L   E +   +    +   + ++ G E  GL +E +   +A++  
Sbjct: 102 LQA-----EGVKVCALEIAEGSRAHSSICMADFPICLLVGNEVDGLDDELLQACDAVLEI 156

Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
                  SLN++ A  + ++E + 
Sbjct: 157 AQYGTKHSLNVAVAAGVALFELVR 180


>gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385]
          Length = 247

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 15/171 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANAD 65
           L    +  +++L       N+G   R      +    +V P+D     +      +  A 
Sbjct: 90  LAQYEQPLLLVLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAA 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  VRV           +      A        V    EA   + +   +G  + I+ 
Sbjct: 148 ETVPLVRVT----------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  G+        + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 197 GAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 247


>gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
           A21JP2]
 gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
           A21JP2]
          Length = 231

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 10/160 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              V++L   Q   N+G + R+     +  + L   R    +      S+     I  +R
Sbjct: 82  PKLVLVLDHIQDPHNLGAIIRSANAAGVKHIILPRDRSAEINSTVIKVSSGGFIGIKFIR 141

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V +++   I  L           NNF    +  +       ++   + V +I G E  G+
Sbjct: 142 V-NSVSATINFL---------KNNNFWVYASALDKKAQAYNQVSYSEQVALIVGNEGNGV 191

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   + +++  I         SLN+S A  ++++E ++N 
Sbjct: 192 SKSTLNMADQKIYIEQFGTVQSLNVSVATGILLFEIIKNQ 231


>gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
 gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a04]
 gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133C]
 gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133A]
 gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133B]
 gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a01]
 gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
 gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a01]
 gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133B]
 gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133A]
 gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133C]
 gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a04]
          Length = 254

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 11/144 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  + L        S K   S   ++  +        L++ +A
Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHL------PVLQKDLA 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D+  +          F              +++   ++  II G E  G++ E ++L++ 
Sbjct: 172 DVIPVM-----KGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQ 226

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN+  A  ++++
Sbjct: 227 NVYIPMKGNAESLNVGVAAGIVLY 250


>gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 1313]
          Length = 267

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR--- 72
           +IL   Q   N+G + R      +T   +V+       + K   S+  +   I   +   
Sbjct: 119 VILDSVQDPGNMGTIIRTADAAGMTG-VIVSKGCVDVYNPKVLRSTMGSIFHIPICQSQD 177

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +F  +               R +     + A           +    N+ I+ G E  G+
Sbjct: 178 IFETMD--------------RMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEANGI 223

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E    ++ ++  P+     SLN S A  ++++E + 
Sbjct: 224 SEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261


>gi|218680736|ref|ZP_03528633.1| rRNA methylase protein [Rhizobium etli CIAT 894]
          Length = 189

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +   R  + 
Sbjct: 38  VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVAR--AT 95

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E IA      +  I AT      +++++   K             + V ++ G E+ G
Sbjct: 96  PEEFIAWRKSAGVS-IVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 141

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L ++    ++A+   P      SLN++ A  +M++E   + +  +E
Sbjct: 142 LPDQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 187


>gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 264

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 21/159 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + R      +  + L        + K   SSA       S  V  + 
Sbjct: 115 VLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAG--EWFRSPLVVESD 172

Query: 78  KEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             A+     A      AT      N   +   +                 I+ G E  GL
Sbjct: 173 LSALVKKYQAQGVKAIATLPTATKNHWEIDFTR--------------PTLILLGNEGAGL 218

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +   L++  +  P+     SLN++ A  ++++E    
Sbjct: 219 SPQLATLADETVKIPLFGGVESLNVAIATAVILYEARRQ 257


>gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           TM1035]
 gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           TM1035]
          Length = 258

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 8   LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L +    P ++L+       N+G + R+   F      ++ PR    + +  + +  A  
Sbjct: 103 LGDGRTAPRVVLLDRVTDPHNVGAILRSAEVFGAR--AVIAPR-HHAAPETGALAKTASG 159

Query: 67  VIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---V 121
            ++        NL +AI +L               +VL     A +  E    G+    V
Sbjct: 160 ALERQPYLRVRNLADAIIELQ----------AMGYTVLGLAGEAELTIEAALEGKRDRPV 209

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            ++ G E  GL      + +A++       F SLN+S
Sbjct: 210 ALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVS 246


>gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum ATCC 27405]
 gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
          Length = 267

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR--- 72
           +IL   Q   N+G + R      +T   +V+       + K   S+  +   I   +   
Sbjct: 119 VILDSVQDPGNMGTIIRTADAAGMTG-VIVSKGCVDVYNPKVLRSTMGSIFHIPICQSQD 177

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +F  +               R +     + A           +    N+ I+ G E  G+
Sbjct: 178 IFETMD--------------RMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNEANGI 223

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E    ++ ++  P+     SLN S A  ++++E + 
Sbjct: 224 SEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261


>gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
           Datisca glomerata]
 gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
           Datisca glomerata]
          Length = 409

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q +  G ++ L       N+G V R+   F    + +   R    +  A  +SA A   +
Sbjct: 246 QEAPPGLLVALDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARL 305

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              R            + + A T   +     V    +  + L+E   +   + ++ G E
Sbjct: 306 PVARAT----------NLVRALTGWAQAGLFVVGLAADGEVSLDELEMASDPLVLVVGSE 355

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLN 156
             GL+       +  +  P+     SLN
Sbjct: 356 GRGLSRLVGERCDLTVRIPMAGDVESLN 383


>gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 272

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 11/169 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           LQ      V++L   Q   N+G + R      L  +  +         K   +SA A   
Sbjct: 111 LQGRGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPKVVRASAGALFH 170

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + +   F +L    A     + T A      K V  P+             +   +  G 
Sbjct: 171 LPA---FGDLP---APAVLEFFTGA---GVQKFVADPR--GDYSLYECDFSRPTALFMGN 219

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E  G      A ++ +++ P+     SLN+  A  L ++E +   + SS
Sbjct: 220 EARGCGEMLHAAADRVVAIPMPGQAESLNVGVAASLFIYEAVRQRLKSS 268


>gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
 gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
          Length = 254

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 21/157 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N G + R      +  + +        + +   +SA A   I   +V  ++K+A+     
Sbjct: 114 NFGAIIRTAECTGVNGIIIQKDGSAPVNAETIKTSAGAAFKIPICKV-DHIKDALYILQA 172

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A++  + AT               E    +   I   Q + I+ G E+ G+    + + +
Sbjct: 173 AEIKTVAAT---------------EKTEDVLYDINLNQPIAIVMGSEQRGINPSILKMVD 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                P+     SLN+S A    ++E +   I  ++K
Sbjct: 218 YKAKLPILGDIASLNVSVACGAFLYETIRQRISITKK 254


>gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 268

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R+R      L P  AA  L E   +G+ V ++ G E  GLT + + +++     P++   
Sbjct: 189 RDRGFQLISLTPNPAAPTLAE-AMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGT 247

Query: 153 PSLNISQAVLLMVWE 167
            SLN++ A  +  +E
Sbjct: 248 DSLNVATAAAMAFYE 262


>gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 248

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 15/177 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   + Q  A    + L      +N G V R+        +          +     +SA
Sbjct: 85  PVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALGARAILWPEHSSAPLTPATFRASA 144

Query: 63  NADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A   I+  R+    +L +A+       A  AR      ++    +  + L E   +G  
Sbjct: 145 GA---IEHARLCRVPSLPDALE------ALAARG---VAAIALDAQGPVELGELPLTG-P 191

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           V I+ G E  G       +   +   P+     SLN S A  + ++E +     S  
Sbjct: 192 VAIVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALYEVVRQRRASRA 248


>gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
           4810]
 gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
           4810]
          Length = 320

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 10/156 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++ L       N+G + R+   F    + L   R    +      +A A   +   +
Sbjct: 165 PPLLVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAAGAAGRVRVAQ 224

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V           +     TA    +  ++    E  +         Q   ++ G E  GL
Sbjct: 225 VT----------NLNRTLTALKEQDVFALGLDAEGDVTTRGLELGTQPAVLVVGAEGKGL 274

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +     + + ++S P+     SLN S A  + ++E 
Sbjct: 275 SRLARDICDQVVSIPMGGRAESLNASVAAAIALYEI 310


>gi|62184854|ref|YP_219639.1| hypothetical protein CAB210 [Chlamydophila abortus S26/3]
 gi|62147921|emb|CAH63668.1| 4.2.3 [Chlamydophila abortus S26/3]
          Length = 265

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 14/154 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI 81
           +   N+G + R         + L +P     +     SS      +    ++S  L +  
Sbjct: 125 EKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLP---IWSATLDQ-- 179

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  +             V +P+   +   E     Q + ++FG E+ GLT   +  + 
Sbjct: 180 --VQQVIL----EEKWHAFVTSPRAHTMYFCE--NYNQPLVLVFGSEKDGLTASWLRGNF 231

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + IS P+     SLN+S AV  + +E +     +
Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAYEVVRQRWEA 265


>gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 248

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 11/156 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G   R+     +T + +   +    +   R +SA A   +  +   +NL
Sbjct: 103 VLDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSAPVNATVRKTSAGAADRLP-IVAVTNL 161

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              + +L          +          EA   L  +   G NV ++ G E  GL     
Sbjct: 162 ARCLRELQ---------KQGVWIYGLAGEAETSLYAQDLRG-NVALVLGGESDGLRRLTR 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              + ++  P+     SLN+S A  + ++E +   +
Sbjct: 212 EHCDGLVRIPMPGEIESLNVSVAAGVTLFEAVRQRM 247


>gi|260435545|ref|ZP_05789515.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
 gi|260413419|gb|EEX06715.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
          Length = 210

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                + G E+WGLT++   L +  +  P+  +  SLN+S A   +++E +    V+   
Sbjct: 114 GPTAFVLGAEKWGLTDQAQDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVAGLA 173

Query: 179 NVKEQNTPATKGELLSF 195
             + +       + L F
Sbjct: 174 PTQGEGLKPEHYQQLLF 190


>gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 263

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 41/185 (22%)

Query: 4   YAPQLQNSAK--GPVIILVDPQLGENIGMVARA----------M--WNFNLTQLRLVNPR 49
             P L    +  GPV++L       NIG + R+          M   N          P 
Sbjct: 104 AQPDLDTVLEQPGPVLVLDQVTDPRNIGAILRSAAAFGAVAVVMQDRN---------APE 154

Query: 50  DGWPSEKARSSSANADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
           +     +A   ++ A  ++  +RV   S + +A+            +R  +  V+     
Sbjct: 155 ETGTLARA---ASGALEIVPLIRVVNLSRVLDALK-----------SRGLW--VVGLDAG 198

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             VL+   F  + V ++ G E  GL        + I    ++    SLN+S A  + ++E
Sbjct: 199 GGVLDGAAFHQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSSRMESLNVSNAAAVALYE 258

Query: 168 CMENS 172
              + 
Sbjct: 259 MFRHR 263


>gi|13508260|ref|NP_110209.1| putative rRNA methylase [Mycoplasma pneumoniae M129]
 gi|2500863|sp|P75257|TRML_MYCPN RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase MPN_521
 gi|1673994|gb|AAB95969.1| putative rRNA methylase [Mycoplasma pneumoniae M129]
 gi|301633607|gb|ADK87161.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma pneumoniae
           FH]
          Length = 166

 Score = 52.8 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 9/156 (5%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R+   F    L L+ P   + ++K    +       D V++F +
Sbjct: 8   IVLFCPEIPNNTGNIVRSCTAFK-ANLHLIKPYGFFLNDKRMVRA--GLNCWDKVQMFEH 64

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                        TT  N+  +    +       +N +  + + +  +FG+E  GL    
Sbjct: 65  -----KSWEHFIETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTL 119

Query: 137 IAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   S   +  P+     S+N+S  V  +++E  + 
Sbjct: 120 MEQYSQNQVRIPIWNPVRSINLSNTVACVLYEYAKQ 155


>gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 193

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 23/156 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFS---NL 77
           Q   N+G + R      +    ++ PRD     +E     S  A   +  ++V +    +
Sbjct: 54  QDPHNLGAILRTADGAGVD--AVIAPRDKSVGITETVLRVSVGAAEKVPFIQVTNLARTM 111

Query: 78  KEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           K+  +   +I+ T+ + +R  +++                      ++ G E  G+    
Sbjct: 112 KQLQSRGIWIFGTSDKGDRGLYETDFT---------------GPAALVMGAEGEGMRRLT 156

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + ++  P+    P LN+S A  + ++E +   
Sbjct: 157 EENCDFLLRIPMKGSIPCLNVSVATGVCLYEMVRQR 192


>gi|255311209|ref|ZP_05353779.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276]
 gi|255317511|ref|ZP_05358757.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276s]
          Length = 269

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 36/162 (22%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76
           +   NIG + R      +    L +P     +     SS           VF      ++
Sbjct: 126 EKPGNIGALLRIADGAGVDGAILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177

Query: 77  LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           LKE +  +H     ++ TT            P       ++     Q + ++FG E+ GL
Sbjct: 178 LKEVLDLVHQQEWQVFTTT------------PSAQTFYFDQDFC--QPMVVVFGSEKDGL 223

Query: 133 TNEEI--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + + +  +  N  I+ P+     SLN+S +V  + +E +   
Sbjct: 224 SPDWLNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263


>gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 264

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSS 60
            P   ++   + G  ++L   Q   N+G + R+   F     L L    D W  +  R+S
Sbjct: 104 YPPEARMPKRSDGLFLVLERLQDPGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRAS 163

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           + +A  +         L           A  AR                   E I     
Sbjct: 164 AGSAFRIPVIAVEIERLFALQNAGMRFIAAVAREGGTP--------------EAIDLRGG 209

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             ++ G E  GL+ E +ALS+   + P      SLN + A  L+++
Sbjct: 210 CAVMIGNEGAGLSVELLALSDERATIPCPGAVESLNAAVAGSLLLY 255


>gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 275

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 20/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL + +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 128 ILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHIPIARV-TNL 186

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +AI  L     +I+ T  +  +             + N +  +G    +I G E  G++
Sbjct: 187 SQAIQQLKQAGFWIFGTDMKGTDYR-----------LWNAQGAAG----LIIGNEGRGMS 231

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                  + +++ P+     SLN S A  L++++   +   + +
Sbjct: 232 EGLKKDVDEMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNGAPQ 275


>gi|268318179|ref|YP_003291898.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262335713|gb|ACY49510.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 259

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 25/167 (14%)

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            ++  AD  +D V  +    EA+          A     ++ V    E A  ++   F+ 
Sbjct: 114 RTAQGADKWLD-VWTWPTAAEAVP---------ALKAAGYRIVATALEEAEPIDTFDFTV 163

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
               ++FG E  G++ E +A+++A    P+     S NIS A  + ++    + +    +
Sbjct: 164 -PTALVFGNEVEGVSRELLAMADARCVIPIVGFTQSFNISVAAAIALYHAQRDRLARRGR 222

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKML-DDLYS 224
           +                    + +L    Y R V+K   +L + L  
Sbjct: 223 HGDLSPE-------------WKATLRAVFYLRSVQKAGVLLWERLQR 256


>gi|300870081|ref|YP_003784952.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000]
 gi|300687780|gb|ADK30451.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000]
          Length = 167

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 20/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLT-QLRLVNPRDGWPSEKARSSSANADC 66
           + N      I L  P++  N G + R      L   L +V+      S K    +     
Sbjct: 7   ISNENFNVSIALYRPEIPSNTGNIGRLC--VGLNISLHIVSKPSFILSAKEIRRA--GLD 62

Query: 67  VIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             + + +    N    +             + N K ++   +   +  +      N  ++
Sbjct: 63  YWEKLNLIKHENEHTFLEYC----------KENNKRIVPISKFGHIRYDEFNYSDNDILL 112

Query: 125 FGRERWGL--TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           FGRE  GL  +  E   +N+ +  P++    S+N+S    ++ +E    
Sbjct: 113 FGRESTGLRESIWENDAANS-VYLPMSDDIRSINVSNTAAIVSYEAFRQ 160


>gi|125600959|gb|EAZ40535.1| hypothetical protein OsJ_24991 [Oryza sativa Japonica Group]
          Length = 263

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            N+    R+     +  + +++  +       R  S  A+  +D + ++S+  E   A+ 
Sbjct: 78  GNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLD-IELWSSTAECFDALK 136

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +             V    +   Q   I+ G E  G++++ + LS+ 
Sbjct: 137 KRGYRIATTYLGND------------SVCVYDMDWSQPTAIVVGNELMGISDDALKLSDL 184

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
             S P+  +  S N+S A  +++ 
Sbjct: 185 HCSVPMKGMVDSFNVSVAAGILMH 208


>gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 256

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 11/181 (6%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A    +     +++L   +   N+G + R+        + +   R    +     +SA A
Sbjct: 87  ARAQASGRPPLLVVLDGVEDPHNLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAKASAGA 146

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                  RV +           +  T  R +      +A           +       ++
Sbjct: 147 VERCPVARVTN-----------VAKTLERLKEAGIWSVAFAADGERALGEVDLKGPTALV 195

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            G E  GL        +     P++    SL++S +  + ++E       +  K+  E  
Sbjct: 196 LGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAGTPSKSAVEMR 255

Query: 185 T 185
            
Sbjct: 256 P 256


>gi|319408924|emb|CBI82581.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           schoenbuchensis R1]
          Length = 271

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 21/163 (12%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANAD 65
           LQN  +  ++ +L      +N+G + R    F  +   +V+         KA   S  A 
Sbjct: 115 LQNLPEKTLVPVLCGISNHDNMGAIFRNAAAFA-SHGIIVDKTSCDPLYRKAIRVSVGAA 173

Query: 66  ---CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
                     +  ++ EA+ D  F               L+P  +A    +   S +   
Sbjct: 174 LKIPYTQGADI-DSIIEALNDADF-----------HLYALSP--SAPRYLKEAKSTKRTA 219

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           II G E  GL    +  S  +   P+   F SLN++ A  + +
Sbjct: 220 IILGAEGDGLPAHILQKSETL-RIPMAYGFDSLNVATASGIAL 261


>gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
 gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
          Length = 254

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 21/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   N+G + R    F +  + L        S K   S   ++  +  ++   +L E I 
Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175

Query: 82  ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                    +Y T                      +++   ++  II G E  G++ E +
Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + ++  +  P+     SLN+  A  ++++
Sbjct: 222 SSADQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|255099812|ref|ZP_05328789.1| putative RNA methylase [Clostridium difficile QCD-63q42]
          Length = 176

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72
           V+IL   Q   N+G + R   +  +  +  +       + K   S+  +     +ID+ +
Sbjct: 31  VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQ 90

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 + +  L F             ++++         ++I  G  V ++ G E  G+
Sbjct: 91  --DETVDMLKSLDF-------------NIVSSYLNTENFYDKIDYGSKVALVIGNEANGI 135

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             E ++ S+ ++  P+     SLN + +  ++++E  +
Sbjct: 136 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 173


>gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26]
 gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932]
 gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55]
 gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34]
 gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79]
 gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291]
 gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291]
          Length = 265

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72
           V+IL   Q   N+G + R   +  +  +  +       + K   S+  +     +ID+ +
Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQ 179

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 + +  L F             ++++         ++I  G  V ++ G E  G+
Sbjct: 180 --DETVDMLKSLDF-------------NIVSSYLNTENFYDKIDYGSKVALVIGNEANGI 224

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             E ++ S+ ++  P+     SLN + +  ++++E  +
Sbjct: 225 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 262


>gi|126698277|ref|YP_001087174.1| putative RNA methylase [Clostridium difficile 630]
 gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile]
          Length = 226

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72
           V+IL   Q   N+G + R   +  +  +  +       + K   S+  +     +ID+ +
Sbjct: 81  VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQ 140

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 + +  L F             ++++         ++I  G  V ++ G E  G+
Sbjct: 141 --DETVDMLKSLDF-------------NIVSSYLNTENFYDKIDYGSKVALVIGNEANGI 185

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             E ++ S+ ++  P+     SLN + +  ++++E  +
Sbjct: 186 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKK 223


>gi|42518756|ref|NP_964686.1| hypothetical protein LJ0831 [Lactobacillus johnsonii NCC 533]
 gi|227889595|ref|ZP_04007400.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC
           33200]
 gi|268319843|ref|YP_003293499.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|41583042|gb|AAS08652.1| hypothetical protein LJ_0831 [Lactobacillus johnsonii NCC 533]
 gi|227849843|gb|EEJ59929.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC
           33200]
 gi|262398218|emb|CAX67232.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 185

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 18/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V  R
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +L+  +         T    +    +           +     ++   +FG+E  GL
Sbjct: 60  MHDDLEAFLN--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               +    +  +  P++      N+S +V +++ E +   
Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQ 152


>gi|303234407|ref|ZP_07321046.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
 gi|302494523|gb|EFL54290.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
          Length = 234

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +  N  +   IIL       N+G + R+M  F    L L++      + K   +S  A  
Sbjct: 84  EKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKVVRASMGAFF 143

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            + +++ F NL++   +            NN        E++  L +  F  +   + FG
Sbjct: 144 KL-NIQKFDNLEDYKKNF----------PNNKIYSFLLDESSNELRDVKFD-EPFSLAFG 191

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            E  GL  E    +   I    +    SLN+  A  + ++E
Sbjct: 192 NEGAGLPKE--YYNENKIFINQSKDVDSLNLPIACSIAMYE 230


>gi|163856832|ref|YP_001631130.1| putative RNA methyltransferase [Bordetella petrii DSM 12804]
 gi|163260560|emb|CAP42862.1| putative RNA methyltransferase [Bordetella petrii]
          Length = 258

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 18/171 (10%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P L      P++ L   Q   N+G + R      + +  L++P      S K     
Sbjct: 100 PPTPALPARLDEPMVWLDRVQDPGNVGTILRVCAAAGIGR-VLLSPGCAAAWSPKVLRGG 158

Query: 62  ANADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A   +      ++L+     L   + ATT     +  +   P   A            
Sbjct: 159 QGAHFALALHE-HADLQACAQRLEIPLAATTLEGAQDLYATRLPPACA------------ 205

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +FG E  G+       +   +     P   SLN++ A  L ++E    
Sbjct: 206 --WVFGHEGQGVAPALQQAAALRVRIDHAPAVESLNVAVAAALCLFEQRRQ 254


>gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 265

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 33/178 (18%)

Query: 6   PQLQNSAKGPVIILVD--PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             L   +K P+I LV   P+   NIG + R     ++  + + NP+    +     SS  
Sbjct: 107 EALTLKSKNPLI-LVAEAPEKPGNIGAILRTADAASVDAVIIANPKSDLYNPNIIRSSVG 165

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--- 120
                    VF+             A++     N   +   K    + +  +   +    
Sbjct: 166 --------CVFTT--------EIAMASS-----NDAILYLQKYNFNLFSAILQESEPYHT 204

Query: 121 ------VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   I+ G E  GLT      +   IS P++ +  S+N+S A  ++++E     
Sbjct: 205 QDYTLPTAIVVGTEATGLTQAWRDAATQNISIPMHGVIDSMNVSVAAGILIFEAKRQR 262


>gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 255

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 19/177 (10%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++L+    Q   N+G   R+     +T + +   +    +   R +SA A 
Sbjct: 91  LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             I  V V +     +A            R+  K  +     A      ++S     NVG
Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           ++ G E  GL        + ++  P+     SLN+S A  + ++E +   +    + 
Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLEQVSQQ 253


>gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
           6192]
 gi|306531605|gb|ADN01139.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
           6192]
          Length = 265

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKARS 59
           + P       ++    + L D +   N+G + R+   F  + + L +P    P   +A  
Sbjct: 104 LEPRGALPPRTSLPIWVYLEDLRSPYNVGAIFRSAEAFGASGIYL-SPATPTPDHPRAAR 162

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           ++     V+   R+ +                 R       +LA +     ++   F  +
Sbjct: 163 TARGTQHVLPWERLPAE----------------RLGGLGLPILALETGGTPIDTYPFPPE 206

Query: 120 NVGIIFGRERWGLTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMV 165
            + ++ G E  G++ E +AL+      +S P+     SLN+S A  +++
Sbjct: 207 GI-VVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILL 254


>gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang]
          Length = 259

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 20/158 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + +   R    +      S  A   +   RV +NL + I 
Sbjct: 118 EDPHNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 176

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +++ T    ++  K                 +  +  ++ G E  G++     
Sbjct: 177 TLKERGMWVFGTAMDGQDYRKW---------------DAKGSTALVIGNEGKGISPGVAK 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L +A I+ P+     SLN S A  +++++   +     
Sbjct: 222 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASRHEEK 259


>gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas
           ingrahamii 37]
 gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas
           ingrahamii 37]
          Length = 246

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 29/176 (16%)

Query: 7   QLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
            L  S   P    IL       N+G   R+     +  + +  P+D     +   R  + 
Sbjct: 89  SLLESLTAPPFLLILDGVTDPHNLGACLRSADAAGVHAVII--PKDNSASLTPVVRKVAC 146

Query: 63  NAD------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            A        V +  R   +L++      +IY T                 A        
Sbjct: 147 GAAESVPLIHVTNLARAMRSLQDK---GVWIYGTAG--------------EATQSLYDCK 189

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + +  G E  GL        + +I  P+     SLN+S A  + ++E +   
Sbjct: 190 LEGGMALAMGAEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVCLFEVVRQR 245


>gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 259

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + +   R    +      S  A   +   RV +NL + I 
Sbjct: 118 EDPHNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 176

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +++ T    ++  K                 +  +  ++ G E  G++     
Sbjct: 177 TLKERGMWVFGTAMDGQDYRKW---------------DAKGSTALVIGNEGKGISPGVAK 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +A I+ P+     SLN S A  +++++   + 
Sbjct: 222 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASR 255


>gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 322

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 17/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---V 73
           + L +     N+G V R++  F    + +   R    +  A  +SA A   +   R   +
Sbjct: 176 VALDNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNL 235

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              LK+  +    +                         +       V I+ G E  GL+
Sbjct: 236 TRTLKDWQSKGVQVVGL--------------DAGGDTSLDNYEGTGPVVIVVGSEGKGLS 281

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  ++I+S P+     SLN S A  +++ E     
Sbjct: 282 RLVRETCDSILSIPMAGEVESLNASVAAGVVLSEIARQR 320


>gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 321

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 17/159 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---V 73
           + L +     N+G V R++  F    + +   R    +  A  +SA A   +   R   +
Sbjct: 175 VALDNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNL 234

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              LK+  +    +                         +       V I+ G E  GL+
Sbjct: 235 TRTLKDWQSKGVQVVGL--------------DAGGDTSLDNYEGTGPVVIVVGSEGKGLS 280

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  ++I+S P+     SLN S A  +++ E     
Sbjct: 281 RLVRETCDSILSIPMAGEVESLNASVAAGVVLSEIARQR 319


>gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
 gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
 gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
           LC2W]
 gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
           BD-II]
          Length = 259

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + +   R    +      S  A   +   RV +NL + I 
Sbjct: 118 EDPHNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 176

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +++ T    ++  K                 +  +  ++ G E  G++     
Sbjct: 177 TLKERSMWVFGTAMDGQDYRKW---------------DAKGSTALVIGNEGKGISPGVAK 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +A+I+ P+     SLN S A  +++++   + 
Sbjct: 222 LMDAMIAIPMVGHVQSLNASVAAGILMYQAFASR 255


>gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9215]
          Length = 326

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 19/165 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N A   ++ L       N+G + R+   F+   + +   R    +      +A A   + 
Sbjct: 176 NCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHLQ 235

Query: 70  SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             RV  NL  A+  L      I   +                  +          + +I 
Sbjct: 236 VSRVV-NLNRALEVLKKNGFLIVGLSG--------------DGQLSLSNFSEIVPLVVIV 280

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++       + ++S P+     SLN S A  + ++    
Sbjct: 281 GSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325


>gi|86133500|ref|ZP_01052082.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820363|gb|EAQ41510.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 229

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 39/217 (17%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L    +   ++L D     N   V R    F +  L ++  R  + +  ++  +  A   
Sbjct: 30  LAERTRHFTVVLEDIYQPHNASAVVRTCDIFGVQDLHVIENR--YINRVSKYVTKGAQKW 87

Query: 68  IDSVRVFSNLKEAIADL--HF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           I + + +    +       H       I AT+            P   A +L +     +
Sbjct: 88  I-TTKRYKTDGDNTKTCLNHLKTAGYQIIATS------------PHADANLLQD-FKIDK 133

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV-----------WEC 168
               +FG E  G+++     ++  +  P+     S NIS A  +++            + 
Sbjct: 134 KTAFVFGAEATGISDTVKEHADGFLKIPMVGFTESFNISVAAAIILQDVTTRLKNSRIDW 193

Query: 169 MENSIVSSE---KNVKEQNTPATKGELLSFLDYLEIS 202
           M ++    +   + +KE     TK E   F   LE  
Sbjct: 194 MLSNDEKEQLYLQWIKETIKNVTKIE-ERFYQQLEDE 229


>gi|315022826|gb|EFT35850.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Riemerella
           anatipestifer RA-YM]
 gi|325336783|gb|ADZ13057.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 231

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 94  NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153
            R      ++P+  A +L +       + ++FG E  G+++E +  ++  ++ P+     
Sbjct: 110 ERGYKIVAVSPENNATMLPDYKVE-TPIALVFGTEWEGVSDELLDFADETLAIPMYGFTK 168

Query: 154 SLNISQAVLLMVWECMENSIVSS 176
           S N+S A  + ++E  +  + S+
Sbjct: 169 SFNVSVAAAICMYELKQKLLNST 191


>gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 236

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 11/162 (6%)

Query: 12  AKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           AK  +I+L D  +   N+G + R      +  + +   R    +      S  A   I++
Sbjct: 84  AKNNLIVLCDQLEDPHNLGAILRTCDACGVDGVVVGKHRSVGLTSTVAKVSTGA---INT 140

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+V     EA    + + A        +  V A      V          + ++ G E  
Sbjct: 141 VKV----AEA---TNMVKAIAELKEAGYWVVAAENAVDAVDYTEFNVDMPLVLVVGSEGK 193

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G++       + + + P+     SLN+S A  +++++ +   
Sbjct: 194 GISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLFDIVRRR 235


>gi|24666840|ref|NP_649130.2| CG14100 [Drosophila melanogaster]
 gi|74871275|sp|Q9VW14|RMTL1_DROME RecName: Full=RNA methyltransferase-like protein 1 homolog
 gi|7293773|gb|AAF49141.1| CG14100 [Drosophila melanogaster]
          Length = 407

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 22/171 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSV 71
              ++  + +   N+G + R       +Q+ + +        KA            I   
Sbjct: 235 PITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294

Query: 72  RVFSNLK-----EAIADLHFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  L      EA  D H   A T  R R N +++       +        G +  +I 
Sbjct: 295 VTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGL--------GAHNLLII 346

Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++ E     N        I  P+     SLN++ A+ L+++E   
Sbjct: 347 GGESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRR 397


>gi|325002579|ref|ZP_08123691.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia sp. P1]
          Length = 266

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 20/170 (11%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L +     V++L       N+GM+ R+     L  + L  PR G P+            
Sbjct: 112 DLGSRRPASVLVLDAVTNPSNVGMILRSATAAGLDGVLL--PRRGVPA------------ 157

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARN----RNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            ID + + ++   A A       T A      R+   SV      +  L +       V 
Sbjct: 158 -IDPLVIKASAGVAFAAPVLRCGTAAEGVDLMRDAGFSVFGLDTGSGSLLDAELP-HRVA 215

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  GLT +     + I+S P+     SLN++ A  +  +E +   
Sbjct: 216 LVLGNETDGLTEDVRERLDGILSLPMYGGVESLNVASAGAVAAYELLRRR 265


>gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 234

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L    K  V++L + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELTGKDKSLVLVLDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +D  +V +NL + I  L     ++Y                   A +          
Sbjct: 139 IEYVDISKV-TNLSDTINKLKKLDYWVYGAAG--------------EANISYNEEDYSNK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 VVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|303283642|ref|XP_003061112.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457463|gb|EEH54762.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 184

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 25/171 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-----SSSANADCVIDSVRVFSNLKEA 80
            N+G +AR    F +  + LV         KA        ++N    +     + +L  A
Sbjct: 11  HNVGTIARCATAFGVRAVVLVG-------AKAYNTFGCKGASNHVDFLH----YPSLHAA 59

Query: 81  IADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
              L      TA      K + +   + A+ ++ER F G +   I G E  GLT+ + A+
Sbjct: 60  REGL------TAPPHRVRKIMGVEIMDDAVAIDERPFEG-STAFIMGNEGDGLTDAQKAI 112

Query: 140 SNAIISFPVNP-LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            +  +    +     SLN+S A  +++      +         E+   A +
Sbjct: 113 CDGFVYIRQHGVGTASLNVSVAASIVMHHFALWAAYPERGREGEKFVVAER 163


>gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           piezotolerans WP3]
 gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3]
          Length = 247

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 17/161 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      +  + +  P+D     +      +  A  ++   +V +
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTPVVSKVACGAAEIVPLYQVTN 158

Query: 76  NLKEAIADLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                        A T R+ ++    +      A     +      + I  G E  GL  
Sbjct: 159 ------------LARTMRSLQDKGIWIAGAAGEADSDVYQASLTGPLAIAMGAEGKGLRR 206

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                 +++IS P+     SLN+S A  + ++E +   +  
Sbjct: 207 LTRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQRLAK 247


>gi|116072278|ref|ZP_01469545.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
 gi|116064800|gb|EAU70559.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
          Length = 229

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                + G E+WGL+++   L +  +  P+  +  SLN+S A   +++E +     +   
Sbjct: 114 GPTAFVLGAEKWGLSDQARDLMDEALFIPMRGMVQSLNVSVATATLLFESLRQRQAAGVA 173

Query: 179 NVKEQNTPATKGELLSFLDYLEISLEE 205
             + +   A         ++ +  L E
Sbjct: 174 PSRGEGLTA---------EHYQRLLLE 191


>gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573]
 gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603]
 gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC341]
 gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           VM223]
 gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           MB-451]
 gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC586]
 gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603]
 gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573]
 gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC341]
 gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           MB-451]
 gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           VM223]
 gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC586]
          Length = 246

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D     +      +  A   +  VRV  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPMTATVSKVACGAAETVPLVRVT- 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G  + I+ G E  G+   
Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + +I  P+     SLN+S A  + ++E +   + +
Sbjct: 207 TRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVRQRMAN 246


>gi|269114995|ref|YP_003302758.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322620|emb|CAX37355.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 176

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVF 74
           IIL  P++  N   + R    F    +L ++ P             A    + +    V 
Sbjct: 4   IILYQPEISPNTSNIIRTC--FAGNAKLHIIKPIAFDLHPHWMKRKAAGHFLTEIQHEVH 61

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            N +E      D +  Y T    R   K+ +          + + +   + I+FG E  G
Sbjct: 62  ENYEEFFKKYGDKNIYYVT----RYGLKNYVDVDY-----KQELQTNGELWIMFGTESTG 112

Query: 132 LTNEEIALSNA--IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  + I  +N    +  P+     SLN++ +V ++++E +  
Sbjct: 113 IP-KRIMQTNIPNCLRIPMFDECRSLNLANSVAIVLFEVLRQ 153


>gi|46446084|ref|YP_007449.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399725|emb|CAF23174.1| putative tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 246

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 17/171 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
               N +    I L + +   N+G + R +  F+L  +           ++ ++ S  A 
Sbjct: 81  RSTGNPSWPISIYLDNLRSAHNVGSIIRTVEAFSLGSIYFSTQTPYTNHKQVQNVSMGAY 140

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                V+ + N  E + DL                 L   E AI L E IF  ++  ++ 
Sbjct: 141 ---QWVKCYQN--EDLNDLT-----------QPIIALETSEEAINLYEFIFP-EHFTLVV 183

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E +G + E +  ++ +I  P+     SLN++ A  +   E       + 
Sbjct: 184 GNEEYGCSQEILTKAHYLIEIPLRGRKNSLNVANAFAITAGEIYRQRKTAK 234


>gi|39934266|ref|NP_946542.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|192289793|ref|YP_001990398.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           TIE-1]
 gi|39648114|emb|CAE26634.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|192283542|gb|ACE99922.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           TIE-1]
          Length = 151

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 29/170 (17%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            I L  P + +N G + R  A  N    +  ++ P  G+P+       +     +D V +
Sbjct: 2   RIALFQPDIPQNTGTILRFCACLNV---EAHIIEP-AGFPTSDRHFRRSG-MDYLDQVSI 56

Query: 74  FS-----NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                    ++    A    I  TT   R  F+    P +                ++ G
Sbjct: 57  VRHDSWLKFEQWRKTAGCRLILLTTKGERPYFEQRYQPTDV---------------LMLG 101

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           RE  G+ ++  A ++A +  P+ P   SLNI+ A  ++  E +  +  + 
Sbjct: 102 RESAGVPDDVAAAADARVVIPMQPGLRSLNIAMAAAVVTGEALRQTQFAQ 151


>gi|189241058|ref|XP_968858.2| PREDICTED: similar to RNA methyltransferase like 1 [Tribolium
           castaneum]
 gi|270014173|gb|EFA10621.1| hypothetical protein TcasGA2_TC016258 [Tribolium castaneum]
          Length = 403

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 65/195 (33%), Gaps = 34/195 (17%)

Query: 2   TPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           TP     +     P+ ++  + +   N+G + R        ++ L          K    
Sbjct: 216 TPPVEAFEPVNPLPITVICDNIREPGNLGTILRICAAVGCARVILTKGCVNLWDTKVLRG 275

Query: 61  SANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +  A   +     +   +   +     D  F  A           +++ ++    L E +
Sbjct: 276 AVGAHFKLKIEKKEWDEIGDEVD---PDAKFFIA--------DNRIVSSEDTGGDLGELL 324

Query: 116 -------------FSGQNVGIIFGRERWGLTNEEIALS----NAIISFPVNPLFPSLNIS 158
                         +  ++ ++ G E  G++     L+     A ++ P++    SLN+ 
Sbjct: 325 GKIPIVPYFGVDFRTSNHLVVVVGGETLGVSKNSYELALRSNGARLNIPLSNDVDSLNVG 384

Query: 159 QAVLLMVWECMENSI 173
            A+ ++ +E  +  +
Sbjct: 385 AALGIIAFEIKKQLL 399


>gi|110634557|ref|YP_674765.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110285541|gb|ABG63600.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 266

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 16/163 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+  V+ L      +N+G + R    F    + L +        KA   S  A   + 
Sbjct: 118 PPARALVVALSGIANHDNMGAIFRNAAAFGADAILLDSHCCDPLYRKAIRVSVGAVLKVP 177

Query: 70  SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             R      L E           T   R      L+P  +     E +       ++ G 
Sbjct: 178 FARGGDASTLIE-----------TLTARGFDILALSP--SGEREIETVKRAPRTAVLLGA 224

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  GL    +A   + +  P+   F SLN++ A  + +     
Sbjct: 225 EGPGLPAALLARLPS-VRIPMRNDFDSLNVAAATAIALHRLWR 266


>gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           orientalis CIP 102891]
 gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           orientalis CIP 102891]
          Length = 245

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 27/165 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADC------VID 69
           +L       N+G   R      +    +V P+D   +  A     +  A        V +
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANITATVSKVACGAAESVPLVRVTN 157

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R    L+E    + +   T                 A     +      + I+ G E 
Sbjct: 158 LARTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEG 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G+        + +I  P+     SLN+S A  + ++E +   + 
Sbjct: 201 DGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQRLE 245


>gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
           thalassium ATCC 35110]
          Length = 243

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 33/176 (18%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             ++K  ++IL   +   N+G + R                       A +++ +A  + 
Sbjct: 89  PRNSKQLIVILDGLEDPHNVGAIIRT----------------------AEAAAVDAVIIP 126

Query: 69  D------SVRVFSNLKEAIADLHF--IYATTARNRNNFKS---VLAPKEAAIVLNERIFS 117
                  +  V      A++ +    +   +       K    V             I  
Sbjct: 127 HDSGCPINATVAKTSAGALSHIRLCKVVNLSQTIERLKKHGFWVYGLDMDGEKNYYEIDF 186

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             +  I+ G E  G+        +A+I  P+     SLN S +  + ++E M   +
Sbjct: 187 NDHCAIVVGSEGKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLYEAMRQRL 242


>gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
           vestfoldensis SKA53]
 gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
           vestfoldensis SKA53]
          Length = 258

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 19/158 (12%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            L+     P I+L+       N+G + R+   F     R V       + +  + +  A 
Sbjct: 102 ALREGPMPPRIVLLDRVTDPHNVGAILRSAEVFGA---RAVVAMQRHAAPETGALAKTAS 158

Query: 66  CVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN--- 120
             ++        NL ++I +L                VL     A    E    G+    
Sbjct: 159 GALERQPYLRVRNLADSIVELQ----------QMGYLVLGLDGEAETTIEEAVEGKRDRA 208

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           V ++ G E  GL ++     + ++    +  F SLN+S
Sbjct: 209 VALVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVS 246


>gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Prochlorococcus marinus str. MIT 9313]
 gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
          Length = 535

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 19/167 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G + R+        + L   R    +      +A A   +   RV +   +L EA+
Sbjct: 282 PHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSL-EAL 340

Query: 82  ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
               + +                  E   +    +     + I+ G E+ G++       
Sbjct: 341 KQAGYRVIGLA--------------EEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHC 386

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           + ++  P+  + PSLN S A  + ++E      +            A
Sbjct: 387 DQLVRVPLRGVTPSLNASVATAMCLYEVARRGWMKGVHGQTPSPRIA 433


>gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 246

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VI L   Q   N+G + R      L  + +        ++K   +S  +   I    +  
Sbjct: 107 VIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKGTVDIYNDKVLRASQGSVFHIP--VIEM 164

Query: 76  NLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +  E  +  +  IY T+     ++K V+                    I+ G E  G+  
Sbjct: 165 DFDEVSSKFNGTIYGTSLEEARDYKEVIPSDNFM--------------IVLGNEGQGVNP 210

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E ++ ++  +  P+     SLN++    ++++  ++
Sbjct: 211 EILSATDENLYIPIYGRAESLNVAVCAGILMYHFVK 246


>gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 271

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   Q   N G + R      +TQ+ L        + K   S+  A   ++ V      
Sbjct: 125 ILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIVTHCQP- 183

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +E +             R++   V         L E  F+ Q + ++ G E  G +    
Sbjct: 184 EEILKVC----------RSHKIPVFVGDVEGTDLYETHFA-QPMALVVGNEGNGPS---- 228

Query: 138 ALSN----AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           A         I+ P++    SLN++ A  ++++E       ++
Sbjct: 229 AAFQGPGVKRITIPMSHQVESLNVAMATGIILYEVRRRMTSTT 271


>gi|116629974|ref|YP_815146.1| rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC 33323]
 gi|116095556|gb|ABJ60708.1| Predicted rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC
           33323]
          Length = 209

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 18/171 (10%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V  R
Sbjct: 29  VVLYEPLMPANTGNIARTCAGTNTILD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 83

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +L   +         T    +    +           +     ++   +FG+E  GL
Sbjct: 84  MHDDLDAFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 135

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
               +    +  +  P++      N+S +V +++ E +      + +    
Sbjct: 136 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHH 186


>gi|238853588|ref|ZP_04643958.1| CspR [Lactobacillus gasseri 202-4]
 gi|311110393|ref|ZP_07711790.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22]
 gi|313471788|sp|Q042B4|TRML_LACGA RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase LGAS_1346
 gi|238833806|gb|EEQ26073.1| CspR [Lactobacillus gasseri 202-4]
 gi|311065547|gb|EFQ45887.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22]
          Length = 185

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 18/171 (10%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V  R
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTILD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +L   +         T    +    +           +     ++   +FG+E  GL
Sbjct: 60  MHDDLDAFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
               +    +  +  P++      N+S +V +++ E +      + +    
Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHH 162


>gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
           49242]
 gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
           49242]
          Length = 278

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 15/155 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
               G V+ L       N+G + R    F +  L +    +    E     +  A   ++
Sbjct: 121 EPKSGIVLALDQITDPHNVGAILRTACAFGVDALII---TERHSPEFTGVLAKAASGALE 177

Query: 70  SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            V + S  NL  A+ +L          R     V+          E I   + + ++ G 
Sbjct: 178 HVTIVSVVNLARALDEL----------RGAGYGVVGLDSEGAEPLETIALPKPLALVLGA 227

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
           E  GL        +AI    +     SLN+S A  
Sbjct: 228 EGKGLRRLTRERCDAIARLDLPGPIKSLNVSNACA 262


>gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4]
          Length = 247

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 28/152 (18%)

Query: 23  QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           Q   NIG + R         + +    V+P     + K   S+  +   +    V  NL 
Sbjct: 100 QDPGNIGTMIRTADAAGFDGVIMGEGTVDPY----NPKVLRSAQGSHFHLP--IVNKNLV 153

Query: 79  EAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           E + +LH     ++ T+ +N  +++ VL P                  +I G E  G+  
Sbjct: 154 EVVQELHDNGFDVFGTSLQNGEDYREVLFP--------------AKFALIMGNEGNGMQE 199

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +  +   +  P+     SLN++ A  ++++
Sbjct: 200 TLLHATTKNLYIPIFGKSESLNVAVAAGVLMY 231


>gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 247

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 15/161 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D     +      +  A   +  VRV  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G  + I+ G E  G+   
Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGICLFEAVRQRMANR 247


>gi|315187484|gb|EFU21240.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 265

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 24/171 (14%)

Query: 1   MTPYAP-QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKA 57
           ++P    +L      P+ + L D +   N+G + R+   F  + + L +P    P   +A
Sbjct: 102 LSPEPRGELPPRTSLPIWVYLEDLRSPYNVGAIFRSAEAFGASGIYL-SPATPTPDHPRA 160

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
             ++     ++   R+  +                +  +    V+  +     ++E  F 
Sbjct: 161 ARTARGTQHLLPWRRLAPD----------------QVGSLGLPVIVLETRGTPVDEYTFP 204

Query: 118 GQNVGIIFGRERWGLTNEEIALS---NAIISFPVNPLFPSLNISQAVLLMV 165
            Q + ++ G E  G++ E +AL+      +S P+     SLN+S A  +++
Sbjct: 205 EQGI-VVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILL 254


>gi|307294700|ref|ZP_07574542.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306879174|gb|EFN10392.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 265

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 17/173 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +TP A +L  +     I+    +   N+G + R         L L++      S ++  +
Sbjct: 104 LTPLA-KLDRTKADIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162

Query: 61  SANADCV--IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           S  A     I   R    +         +  T+            P+  +          
Sbjct: 163 SMGALFTQPITQARWGEFMHWLRQGPGELIGTSL---KATHDYQEPRYQSP--------- 210

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               ++ G E  GL     A  + ++  P+     SLN + A  +M +E +  
Sbjct: 211 --SFLLVGNEAQGLPESYEAECDLLVKMPMLGKADSLNAAVACAVMAYELLNQ 261


>gi|15807204|ref|NP_295933.1| rRNA methylase SpoU [Deinococcus radiodurans R1]
 gi|6460013|gb|AAF11758.1|AE002054_3 rRNA methylase SpoU [Deinococcus radiodurans R1]
          Length = 230

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPR-------DGWPSEKARSSSANADCVIDSVRVFSNL 77
             N+  + R      + +   V P+       +G   E    S+     V       S +
Sbjct: 32  PHNLSAIIRTCDAVGVPEAHAVPPKHGTLASFEGHTYEATSGSAHKWVKVHPHADAVSAV 91

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +E  A    + AT    R+       P              +   ++ G E+WG+++E  
Sbjct: 92  RELQAQGFQVLATHLSQRSVD--YREPDYT-----------KPTCVLLGAEKWGVSDEAA 138

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
             ++A I  P+  +  SLN+S A   +++E     + +      + +      EL   
Sbjct: 139 EAADANIVIPMFGMVQSLNVSVAAATILFEAQRQRLAAGMYEEPQLSP----EELHRL 192


>gi|28493313|ref|NP_787474.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
 gi|28572576|ref|NP_789356.1| rRNA methyltransferase [Tropheryma whipplei TW08/27]
 gi|28410708|emb|CAD67094.1| putative rRNA methyltransferase [Tropheryma whipplei TW08/27]
 gi|28476354|gb|AAO44443.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
          Length = 263

 Score = 52.8 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +I G E  G+++      + +++ P +    SLN+S AV + ++E   
Sbjct: 216 LIVGSEGSGISHLVKKHCDELLTIPTDASVDSLNVSVAVSIALYELQR 263


>gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712]
          Length = 319

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 30/177 (16%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
              +     ++ L       N+G V R++  F      +V      P  +A   +A A  
Sbjct: 161 AFDDHDDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWK 213

Query: 67  ----------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                     V  +  +   L++       +    A             +    ++E   
Sbjct: 214 TSAGTAARTPVARATNLTRCLEQYQKAGVTVVGLAA-------------DGDREVHELEE 260

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G  V I+ G E  GL+       + ++  P+     SLN   A  ++++E     +
Sbjct: 261 LGGPVVIVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRRM 317


>gi|83815313|ref|YP_445016.1| rRNA methylase [Salinibacter ruber DSM 13855]
 gi|83756707|gb|ABC44820.1| rRNA methylase [Salinibacter ruber DSM 13855]
          Length = 247

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 65/173 (37%), Gaps = 14/173 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+     N+  V R+        + +V+  +    + ++ ++  A   +D   V+    
Sbjct: 64  LVNT---GNVSAVMRSAEALGHQDMHVVS-GEHDRYKHSQRTAQGAQHWLD---VWH--- 113

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
               D     AT  ++       +      + + +  F+ Q   ++FG E  G+T+  + 
Sbjct: 114 ---WDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFT-QPTALVFGNEDAGVTDTMLE 169

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            S+A    P+     S N+S A  + ++   ++ +     +    +    + E
Sbjct: 170 ASDAACEVPLPGFTESFNVSVAAAVALYHAQQDRLDRQGHHADLSDEARARLE 222


>gi|42525569|ref|NP_970667.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41815580|gb|AAS10548.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 262

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 63/154 (40%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   NIG + R   +F + ++ L +      S KA+ ++      +   R  ++L E++ 
Sbjct: 128 RTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWER--ADL-ESLP 184

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN- 141
           DL  I   T                   +++  F  + + ++ G E  G++ E +  +  
Sbjct: 185 DLPLIVLETG---------------GTDISKFEFPKKGI-VVIGSEELGVSPEAVKKAQG 228

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +I+ P+  +  S+N+S A  + + +  E     
Sbjct: 229 RVITIPMYGIKASINVSVAFGICMQKWCEALTAD 262


>gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
 gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
          Length = 259

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 10/152 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q   N G + R      +    ++  R+    S     SSA A   I    V  NL++ +
Sbjct: 116 QDPFNFGAIVRTAAALGVEG-VIIGTREQAAISSHVVRSSAGAVNHIPICEV-DNLQDTL 173

Query: 82  ADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                    + A   N   +V   +          F+   + +I G E  G+    +   
Sbjct: 174 EVCRLARCQSLAATMNGTHAVQDIRALPE------FAHSPLLLIIGNEARGVAPALLERC 227

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  +  P+     SLN + A  ++++    N+
Sbjct: 228 STTVHIPMQGAVESLNAAVAAGILMFALRANA 259


>gi|116073311|ref|ZP_01470573.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9916]
 gi|116068616|gb|EAU74368.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9916]
          Length = 229

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                + G E+WGL++    L +  +  P+  +  SLN+S A   +++E +     +   
Sbjct: 114 GPTAFVLGAEKWGLSDTARDLMDEAVFIPMTGMVQSLNVSVAAATLLFEAVRQRRAAGVL 173

Query: 179 NVKEQNTP 186
             + +  P
Sbjct: 174 PSQGEGLP 181


>gi|114573243|ref|XP_514281.2| PREDICTED: probable methyltransferase TARBP1 [Pan troglodytes]
          Length = 1621

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++
Sbjct: 1474 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 1532

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + + I     TAR+ +  +    P              +   ++ G ER G+    I
Sbjct: 1533 KKTEGYTIIGVEQTARSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1577

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               +  +  P   +  SLN+  +  L++WE     ++S      
Sbjct: 1578 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 1621


>gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B]
 gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus
           cellulolyticus 11B]
          Length = 250

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 14/145 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA 82
             N+G + R+   F  + + L   R    +     +SA A   +   RV   + +  A+A
Sbjct: 109 PRNLGAIVRSAAAFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARVTNMARVLVALA 168

Query: 83  DLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + +  +   +A                I        G  V ++ G E  GL+        
Sbjct: 169 ERNVTVVGLSADGDTT-----------IQQAADDAGGGPVALVVGAEGRGLSRLVREKCT 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVW 166
            + S P+     SLN+S A  + ++
Sbjct: 218 VVASIPMTGTVESLNVSVATGIALF 242


>gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 270

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 21/149 (14%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           EN+G + R      +              +     +  AD +       S     +    
Sbjct: 131 ENLGSIFRNAAGLGV--------------DAVIFGAGCADPLYRRAVRVSMGHALLVPFA 176

Query: 86  FIYA-----TTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIA 138
              A      T R++      + P  AA  L       +G+ V  + G E  GLT   + 
Sbjct: 177 RAAAWPDELNTLRDKGFQLLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMR 236

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            S+  +  P++    SLN++ A  L  +E
Sbjct: 237 ASDRRVRIPMSRGTDSLNVATAAALAFYE 265


>gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
           splanchnicus DSM 20712]
 gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
           splanchnicus DSM 20712]
          Length = 247

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 20/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N G + R+     +  + + N      S  A  +SA A   +   RV  NLK  + +L F
Sbjct: 111 NFGAIVRSAECAGVDVVIIPNKNSAKISSDALKTSAGALYHVPVCRVL-NLKRVVRELKF 169

Query: 87  -----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                +YA T              E A              II G E  G+  E I ++ 
Sbjct: 170 QRGIRVYAAT--------------EKAEKFYTGADLTLPTAIIMGSEDKGIDEELINIAT 215

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             I  P      SLN+S A  ++++E +   
Sbjct: 216 DCIKIPQKGQIESLNVSAAAAVLLFEVVRQR 246


>gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 286

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + L+       S +   ++  +   +   R  + 
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPVAR--AT 192

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E IA      +  + AT      +++++   K             + V ++ G E+ G
Sbjct: 193 PEEFIAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  +    ++A+   P      SLN++ A  +M++E   + +  +E
Sbjct: 239 LPEQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284


>gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
 gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
 gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum
           K10]
          Length = 247

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---SNLKE 79
           +   N+G + R         + +   R    +     +SA A       +V    + ++E
Sbjct: 107 EDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLSATIEE 166

Query: 80  AIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                L F+ A                +       R+     +G++ G E  G++     
Sbjct: 167 LKERGLWFVCA----------------DMGGESMYRLNLKGPIGLVIGNEGEGVSRLVKE 210

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + + S P+     SLN S A  ++ +E +   
Sbjct: 211 KCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
 gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
          Length = 278

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 24/161 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L   Q   N+G + R+     +    L +      S K   +   A   +   R+  
Sbjct: 127 CIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWSPKTLRAGMGAHFSL---RIHE 183

Query: 76  NLKEAIADLHF---IYATTARNRNNFKS--VLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +         F   + AT     +N     +  P   A                FG E  
Sbjct: 184 DSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFA----------------FGNEGC 227

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G++ E + +    ++ P+     SLN++ A  + ++E +  
Sbjct: 228 GVSEELLEVVRERVAIPMPGCAESLNVAAAAAICLFEKIRQ 268


>gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
           345-E]
 gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
           345-E]
          Length = 261

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 19/154 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L + Q   N+G + R      +  + L        SEKA  SS  +   I  V   S 
Sbjct: 120 VFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVTDVST 179

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             E I   +    F   T+ ++   +               +I        IFG E  G+
Sbjct: 180 -DELIKWKNETNIFFVGTSLQDAEPY--------------TQISLSGCCMFIFGNEGNGV 224

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + + + +S+  I  P+     SLN+S A  ++++
Sbjct: 225 SQKILNISDKKIYIPLKSNVESLNVSIATAVILF 258


>gi|227893169|ref|ZP_04010974.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM
           16047]
 gi|227865035|gb|EEJ72456.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM
           16047]
          Length = 186

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 18/180 (10%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D   VR
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDVR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +L   +  L         +     S  + K  A V  +     +N   +FG+E  GL
Sbjct: 60  MHDDLDAFLKTLG------PNDEMYLISKFSSKNYAEV--DYTDPKKNYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
               +    +  +  P++      N+S +V +++ E +      + +          K +
Sbjct: 112 PETFMREYYDRNLRIPMSNNIRCYNLSNSVAMVLLEALRQQGFPNMETAHHYENDKLKDD 171


>gi|22218790|pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
          Length = 274

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 35/174 (20%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA-------- 57
            + + S    +++ V  +   N+G V R+       +  LV       S +         
Sbjct: 108 EEYRPSPDALILVAVGLEKPGNLGAVLRSADAAG-AEAVLVAGGVDLYSPQVIRNSTGVV 166

Query: 58  ---RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
              R+ +A+   V+D ++   NL         + ATT            P   A+     
Sbjct: 167 FSLRTLAASESEVLDWIKQH-NLP--------LVATT------------PHAEALYWEAN 205

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +     V I  G E  GL    +  +   +  P+     SLN+S +  L+++E 
Sbjct: 206 LRP--PVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEA 257


>gi|296454038|ref|YP_003661181.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183469|gb|ADH00351.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 292

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+    ++    L  P  G P   +A   S      I   R+            
Sbjct: 137 NVGALMRSAAALDV-DAVLATPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              F  + E  +      A    +R+     L  +  A    E       + +IFG E  
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAP--AEDPTHIDKLAMIFGTEGD 253

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL++  IA ++  +  P++    SLN++ +  +  +
Sbjct: 254 GLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFY 289


>gi|296269772|ref|YP_003652404.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296092559|gb|ADG88511.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 184

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              N+G V R    F +  +RL          KA+ ++   D +++       + +AIA 
Sbjct: 39  GPFNVGSVFRTAAAFGVAAIRLAGNATPPTHPKAQKTALGTDRLVEWHAPVP-VTQAIA- 96

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                    R        +     A+ + E    G +V ++ G E  G++   +  ++++
Sbjct: 97  -------AMREDGYRIVAVEITGDAVPIYEADLDG-DVCLLLGAEEHGVSPAALEAADSV 148

Query: 144 ISFP 147
           +  P
Sbjct: 149 VYIP 152


>gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
           49176]
 gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
           49176]
          Length = 259

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 42/176 (23%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS----- 70
           +I+L D +   N+G + R                       A  + A+   +        
Sbjct: 111 IIVLDDIEDPHNLGAIIRT----------------------ANQAGAHGVIIPKRHAVGL 148

Query: 71  -VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---------N 120
              V      AI      Y   A+  N  +++   KE  I       SG+          
Sbjct: 149 TATVARTSAGAIN-----YTPVAKVTNISRTIEELKEKGIWFACADMSGELMYNCNLTGA 203

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +G++ G E  G++       + ++  P+     SLN S A  ++ +E +   + + 
Sbjct: 204 IGLVIGSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLSYEIVRQRMNTK 259


>gi|72383592|ref|YP_292947.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
           NATL2A]
 gi|72003442|gb|AAZ59244.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. NATL2A]
          Length = 229

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + G E+WG++ E  +L +  I  P+  +  SLN+S A   +++E +    V+
Sbjct: 114 GPTAFVLGAEKWGISEEASSLMDEHIHIPMRGMVESLNVSVAASALLFEALRQRQVA 170


>gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 261

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 15/148 (10%)

Query: 15  PVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARS-SSANADCVIDSV 71
           P+++L+       N+G V R+   F      +V P R   P   A + +++ A      +
Sbjct: 112 PLVVLLDRVTDPHNVGAVLRSAEVFGAR--AVVAPHRHSAPETGALAKTASGALERQPYL 169

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERW 130
           RV  NL E +  L  I              L  +  A +      +G+  VG++ G E  
Sbjct: 170 RV-GNLAETMERLKAI--------GYMLLGLDSEAPATLAEGLAIAGKRPVGLVLGAEGP 220

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNIS 158
           GL ++     + ++  P    F SLN+S
Sbjct: 221 GLRDKTRDTCDVLVRIPAAGGFGSLNVS 248


>gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
 gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
          Length = 312

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G  ++L +     N+G V R+   F    + +   R    +  A  +SA     +   R
Sbjct: 160 TGMFVVLDNITDPRNLGAVIRSAAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVAR 219

Query: 73  ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +   +KE   + + +    A   +              L+    +   V I+ G E 
Sbjct: 220 ATNLTRTIKEFKDNGYMVVGLDAGGEHT-------------LDTFDGATDPVVIVVGSEG 266

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G++       + I+S P      SLN S A  +++ E     
Sbjct: 267 KGISRLVRENCDVIMSIPTADWVESLNASVAAGVVLSEFARQR 309


>gi|256383727|gb|ACU78297.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384558|gb|ACU79127.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455265|gb|ADH21500.1| rRNA Methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 181

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 19/167 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-SANADCVID 69
           + +   I+L  P++ +N+G + R     N  +L ++ P      ++  S  SAN    +D
Sbjct: 2   NKRKINIVLYQPEIAQNVGAIMRTCVAIN-ARLHIIEPLGFIFDDRHLSRPSANEYKYVD 60

Query: 70  SVRVFSNLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +R + +  + I    ++         +R   K +           +      NV ++FG
Sbjct: 61  CIR-YDDWNDFITKHPNITLFCL----SRYGQKPISD--------FDFSKINDNVYLVFG 107

Query: 127 RERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +E  G+    +    N     P+     SLNI+  V +  +E +   
Sbjct: 108 KESTGIAKPILKEHYNTTFRIPMISETRSLNIANTVGIASYEVLRQW 154


>gi|294506881|ref|YP_003570939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
           M8]
 gi|294343209|emb|CBH23987.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
           M8]
          Length = 258

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 65/173 (37%), Gaps = 14/173 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+     N+  V R+        + +V+  +    + ++ ++  A   +D   V+    
Sbjct: 75  LVNT---GNVSAVMRSAEALGHQDMHVVS-GEHDRYKHSQRTAQGAQHWLD---VWH--- 124

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
               D     AT  ++       +      + + +  F+ Q   ++FG E  G+T+  + 
Sbjct: 125 ---WDAPTACATHLQDAGYRVVAMHLHADTVPIRDLDFT-QPTALVFGNEDAGVTDTMLE 180

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
            S+A    P+     S N+S A  + ++   ++ +     +    +    + E
Sbjct: 181 ASDAACEVPLPGFTESFNVSVAAAVALYHAQQDRLDRQGHHADLSDEARARLE 233


>gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 255

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 19/177 (10%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++L+    Q   N+G   R+     +T + +   +    +   R +SA A 
Sbjct: 91  LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             I  V V +     +A            R+  K  +     A      ++S     NVG
Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           ++ G E  GL        + ++  P+     SLN+S A  + ++E +   +    + 
Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLEQVSQQ 253


>gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4]
          Length = 296

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 42/165 (25%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-------------------AD 65
             N+G + R+     +  + L          +A   S                     A 
Sbjct: 151 PTNVGAIFRSAAALGMDAVLLTQACADPLYRRASRVSMGTVFQIPWTYFDKSASWPDGAM 210

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            V+  +  +     A+ D                            +E++ S + + I+ 
Sbjct: 211 DVLHKLG-YKTAAMALRDDSVCI----------------------DDEKMMSEEKLAIVL 247

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  GL +  IA  +  +  P+     SLN++ A  +  W+   
Sbjct: 248 GTEGDGLADHTIADCDYTVKIPMTHGVDSLNVAAASAVAFWQLGM 292


>gi|225552193|ref|ZP_03773133.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
 gi|225371191|gb|EEH00621.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
          Length = 218

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E +     + I FG E  GL+ E +  ++  +  P+     S NIS AV ++++  +
Sbjct: 121 ENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVAIVMYSLL 177


>gi|158426093|ref|YP_001527385.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
           571]
 gi|158332982|dbj|BAF90467.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
           571]
          Length = 281

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 14/168 (8%)

Query: 5   APQLQNSA--KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           AP+L  S   +  V+ L      +N+G + R    F    + L +        KA   S 
Sbjct: 123 APELLASLPERALVVALQGIANHDNMGGIFRNAAAFGADAVLLDSACCDPLYRKAIRVSV 182

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  ++ + R         A                   L+P  +       I  G    
Sbjct: 183 GASLIVPTAR---------AGTTAEMMEAIAAAGFDLVALSP--SGRERLSDIVPGGRQA 231

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +FG E  GL  E +A S   IS P+   F SLN++    +++     
Sbjct: 232 ALFGTEGPGLPPEVLA-STRTISIPMAASFDSLNVATTSGIVLHHLSR 278


>gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 253

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +     N+G + R         + L        + K + S   +   I    + + 
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQ--IIQNP 169

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EAI+             N     ++  +              + ++ G E  G + E 
Sbjct: 170 ILEAISSF---------KENGLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEV 220

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           I  ++  I  P+     SLN + A  +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIY 250


>gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 253

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +     N+G + R         + L        + K + S   +   I    + + 
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQ--IIQNP 169

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + EAI+             N     ++  +              + ++ G E  G + E 
Sbjct: 170 ILEAISSF---------KENGLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEV 220

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           I  ++  I  P+     SLN + A  +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIY 250


>gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 364

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 15/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R+  +F +  + L +          R++   A+ +  ID+  +   L +   
Sbjct: 225 PHNLGGIMRSCAHFGIKGVILQDAGMLESGAAIRTAEGGAEHIKAIDADGLTDTLDKFRK 284

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I  T++                     +      + ++ G+E  GL++      + 
Sbjct: 285 AGYTIVTTSS-------------HKGSQDLAKAKLPAKMVLVLGQESDGLSDSTWDQGDM 331

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +         SLN+S A  +M+ +  + 
Sbjct: 332 SLYIGGTGKVESLNVSVATGIMLAQWWQQ 360


>gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 249

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84
           N+G + R+   FN+  + L  P    PSE      +S+ A  +I  V V  N+  AI  L
Sbjct: 113 NVGSIIRSAVCFNVHAVIL--PYYNSPSENCGMSKTSSGAIDMIPIVYVV-NISNAIHTL 169

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +  +       +    L++     + + +IFG E  GL        + ++
Sbjct: 170 ---------KKAGYWCYGFDAKQGEPLHKIKLDNKRL-VIFGSENKGLRTLTKENCDFLL 219

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
               +    SLN+S A  + ++   
Sbjct: 220 KIATSERIDSLNVSNAAAIALYSIF 244


>gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel]
 gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 249

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84
           N+G + R+   FN+  + L  P    PSE      +S+ A  +I  V V  N+  AI  L
Sbjct: 113 NVGSIIRSAVCFNVHAVIL--PYYNSPSENCGMSKTSSGAIDMIPIVYVV-NISNAIHTL 169

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +  +       +    L++     + + +IFG E  GL        + ++
Sbjct: 170 ---------KKAGYWCYGFDAKQGEPLHKIKLDNKRL-VIFGSENKGLRTLTKENCDFLL 219

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
               +    SLN+S A  + ++   
Sbjct: 220 KIATSERIDSLNVSNAAAIALYSIF 244


>gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 249

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 15/145 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84
           N+G + R+   FN+  + L  P    PSE      +S+ A  +I  V V  N+  AI  L
Sbjct: 113 NVGSIIRSAVCFNVHAVIL--PYYNSPSENCGMSKTSSGAIDMIPIVYVV-NISNAIHTL 169

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +  +       +    L++     + + +IFG E  GL        + ++
Sbjct: 170 ---------KKAGYWCYGFDAKQGEPLHKIKLDNKRL-VIFGSENKGLRTLTKENCDFLL 219

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
               +    SLN+S A  + ++   
Sbjct: 220 KIATSERIDSLNVSNAAAIALYSIF 244


>gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 245

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 26/172 (15%)

Query: 9   QNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           +++ + P++IL   V+     N+G + R       T   L+  R   P            
Sbjct: 87  ESNHENPLLILTDGVE--DPHNMGAIIRTAECVGATA-VLIPKRHNAPI----------- 132

Query: 66  CVIDSVRVFSNLKEAIADLHFI-YA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
               +  V      A+  +  +       T  + +     VL                  
Sbjct: 133 ----NATVAKTSAGAVEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADLTIP 188

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             ++ G E  G++       + +++ P+     SLN S A  ++++E +   
Sbjct: 189 TVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQR 240


>gi|262182925|ref|ZP_06042346.1| hypothetical protein CaurA7_02930 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 273

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKEAIA 82
           ENIG + R     ++  + L +        ++   S      +   R    F+  +  + 
Sbjct: 124 ENIGSLFRNAAGMDVDGILLGSGAADPLYRRSVRVSMGHVLRLPWARFDGGFTTWQRGLE 183

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L        R +      L P   A+ + + +     V ++ G E  GLT   +  +N 
Sbjct: 184 QL--------REKGFRLVSLTPHPDAVHIADALEGADKVALLVGAEGPGLTEHAMRATNV 235

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
               P+     SLN++ +  +  +E   + 
Sbjct: 236 RARIPMAEGTDSLNVATSAAIAFYERQRSQ 265


>gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
          Length = 269

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    + G E  GLT +    ++ +I  P+     SLN + A  ++++E     
Sbjct: 213 KGTAFLIGNEGNGLTEQLTESADTLIKIPMQGKVESLNAAMASGILMYEAYRQR 266


>gi|298571681|gb|ADI87833.1| hypothetical protein AKSOIL_0325 [uncultured bacterium Ak20-3]
          Length = 250

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G +AR+   F +  + +   R    +  + ++S  A    + + +  NL +A+  L
Sbjct: 107 PRNLGAIARSAAFFGVKYILIPKMRQVLLTPASVATSQGAFAFSE-LVLVPNLGQALEKL 165

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                        F  + A         + I   Q V ++ G E  G++      S+ ++
Sbjct: 166 ---------KEEGFWVICA-DAKGEKFEKVIGEYQKVVLLLGSEDKGVSELLKKRSDRVV 215

Query: 145 SFPVN-PLFPSLNISQAVLLMV 165
           S   +     SLN+S A  +++
Sbjct: 216 SISTDTQTLDSLNVSVAAGILL 237


>gi|288575566|ref|ZP_05977206.2| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
 gi|288567580|gb|EFC89140.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
          Length = 134

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 29/146 (19%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIA--DLHFIYAT 90
             N     L LV P  G+P + A+   A      +  +  V  N ++ +   +   I+A 
Sbjct: 2   CANTG-ADLHLVKPL-GFPLDSAKMKRAG-LDYHEFAKLTVHENFEDCLKALEGRRIFAL 58

Query: 91  TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI-----IS 145
           T + +                 +++   +    +FG E  GL  E +   + +     + 
Sbjct: 59  TTKGKTRP--------------DKVSFVEGDVFLFGPETRGLPAEIL---DTLPEGQKLR 101

Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
            P+     S+N+S  V ++++E    
Sbjct: 102 LPMKLGSRSMNLSNTVAVILFEAWRQ 127


>gi|281212010|gb|EFA86171.1| probable prespore-specific protein [Polysphondylium pallidum PN500]
          Length = 637

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 32/204 (15%)

Query: 15  PVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNP-------RDGWPSEKARSSSANA 64
           P+++L   V+     NIG + R+  +F +  +   N        R    S  +  +S  A
Sbjct: 372 PIVVLLDNVE--NPHNIGAIIRSCASFGVKTVFAYNEFGANSGGRINPLSTSSYRASRGA 429

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYA-------------------TTARNRNNFKSVLAPK 105
              +D V +     EAI  +    A                     + +      + +P 
Sbjct: 430 MEYVDVVPI-DIRSEAINMIKKFVAQGWQVISTSGDNSSSSSSNKNSGDEVVSSKLPSPI 488

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                   ++     + I+FG E  G++   + LS   +  P   L   LN+SQA+ +++
Sbjct: 489 RLYSDRATKLLGVNPLMIVFGSESDGVSKGIVKLSTNTLVIPSTGLIDCLNVSQALSIVL 548

Query: 166 WECMENSIVSSEKNVKEQNTPATK 189
            EC      + E   +     AT+
Sbjct: 549 AECWRLQGRALEDQRQGAPDLATQ 572


>gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           CT 5369-93]
 gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           CT 5369-93]
          Length = 247

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 15/161 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D     +      +  A   +  VRV  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G  + I+ G E  G+   
Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 247


>gi|257482400|ref|ZP_05636441.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 138

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 20/139 (14%)

Query: 44  RLVNPRD--GWPSEKARSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNF 98
            +V P+D     +   R  +  A  VI  V V +    L++      ++  T        
Sbjct: 11  VIV-PKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG------ 63

Query: 99  KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
                  EA + L ++  +G  + II G E  G+        + ++  P+     SLN+S
Sbjct: 64  -------EAEVELYQQDLTGPTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVS 115

Query: 159 QAVLLMVWECMENSIVSSE 177
            A  + ++E +    V + 
Sbjct: 116 VATGVCLFEALRQRSVKAA 134


>gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 259

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + +   R    +      S  A   +   RV +NL + I 
Sbjct: 118 EDPHNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 176

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +++ T    ++  K                 +  +  ++ G E  G++     
Sbjct: 177 TLKERGMWVFGTAMDGQDYRKW---------------DAKGSTALVIGNEGKGISPGIAK 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +A I+ P+     SLN S A  +++++   + 
Sbjct: 222 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASR 255


>gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395]
 gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TMA 21]
 gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TM 11079-80]
 gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           bv. albensis VL426]
 gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           12129(1)]
 gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC27]
 gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           12129(1)]
 gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           bv. albensis VL426]
 gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TM 11079-80]
 gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TMA 21]
 gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC27]
 gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
           LMA3894-4]
          Length = 247

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 15/161 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D     +      +  A   +  VRV  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G  + I+ G E  G+   
Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 247


>gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia
           psychrerythraea 34H]
 gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia
           psychrerythraea 34H]
          Length = 251

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           IL       N+G   R      + Q  +V P+D     +   R  +  A   +  V+V +
Sbjct: 106 ILDGVTDPHNLGACLRNADAAGV-QAIIV-PKDNAAQITPTVRKVAVGAVESVPLVQVTN 163

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               +K+      +I  T               E    L +   SG  + ++ G E  G+
Sbjct: 164 LSRTMKQLQKQGVWIVGTAG-------------ETDTCLYDVKLSG-PMALVMGAEGKGM 209

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++  P+     SLN+S A  + ++E +   
Sbjct: 210 RRLTRENCDQLVKLPMAGTVSSLNVSVATGICLFEMVRQR 249


>gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           BX 330286]
 gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           B33]
 gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC9]
 gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
           MJ-1236]
 gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
           MO10]
 gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
           CIRS 101]
 gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           INDRE 91/1]
 gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
           757]
 gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC9]
 gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           B33]
 gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           BX 330286]
 gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           MJ-1236]
 gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
           MO10]
 gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
           CIRS 101]
 gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           INDRE 91/1]
 gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
           757]
          Length = 247

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 15/161 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D     +      +  A   +  VRV  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G ++ I+ G E  G+   
Sbjct: 157 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-SLAIVMGAEGDGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 247


>gi|297620440|ref|YP_003708577.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297375741|gb|ADI37571.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 225

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 31/174 (17%)

Query: 30  MVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIADLHF 86
            + R      LT   L+  PR G    + R +   +D    + S       ++++     
Sbjct: 61  AMVRTAEALGLTDAHLIGKPRKG----RGRQTMRGSDRWMNLHSHSSLDTFQKSMKGFVI 116

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
             AT             P          +   +    +FG E+ GLT+  + +  +  + 
Sbjct: 117 YGAT--------PHGNTP-------LHALSLDRPCCFLFGNEKNGLTDAALNICTSHFTI 161

Query: 147 PVNPLFPSLNISQAVLLMVW----ECMENSIVSSEKNVKEQNTPATKGELLSFL 196
           P+     S N+S A  + +     E  +      + +++E+     + E+  F 
Sbjct: 162 PMYGFCESFNLSVAAAITLHHAVTEKRKLLASPGDLSIEEK-----QAEIAWFY 210


>gi|293363523|ref|ZP_06610279.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           alligatoris A21JP2]
 gi|292552872|gb|EFF41626.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           alligatoris A21JP2]
          Length = 175

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 29/167 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVF 74
           I+L  P++  N G + R  +     +L ++ P       K       A  V+   +  V 
Sbjct: 4   IVLFQPEICPNTGNIVRTCFALG-AKLHIIKPISFDLHPK-YLRRYGAGKVLSDINHEVH 61

Query: 75  SNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            + K+        ++++I       R   ++                  + V ++FGRE 
Sbjct: 62  DSYKDFYNKYKNKNIYYI------TRYGLRTY-----TENNFKNEYDKHKEVWLMFGRES 110

Query: 130 WG-----LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G     L N  +      +  P+     S+N++ +V ++ +E M  
Sbjct: 111 TGIDKSILQNN-LENC---LRIPMVSEMRSINLANSVCILGFEVMRQ 153


>gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 249

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 19/173 (10%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++L+    Q   N+G   R+     +T + +   +    +   R +SA A 
Sbjct: 91  LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             I  V V +     +A            R+  K  +     A      ++S     NVG
Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ G E  GL        + ++  P+     SLN+S A  + ++E +   + +
Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLGA 249


>gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
 gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
          Length = 432

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           EN+G + R      +  +   +        +A   S     ++   R      E      
Sbjct: 278 ENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELK---- 333

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                T + +      + P+ +A  L E      G  V ++ G E  GLT   + LS+  
Sbjct: 334 -----TLKEKGFRLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVR 388

Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167
           +  P++    SLN++ A  L  +E
Sbjct: 389 VRIPMSRGTDSLNVATAAALAFYE 412


>gi|329955404|ref|ZP_08296312.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328525807|gb|EGF52831.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 270

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 17/146 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R+     +  + L        + +A   S  +  ++            + DL F
Sbjct: 133 NIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPW-TWLDTTLSKLHDLGF 191

Query: 87  ---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                A T    ++  S+  P          + +   + II G E  GL+ E IA ++ +
Sbjct: 192 RTAAMALT----DDSISIDNP---------LLATEPKLAIIMGTEGDGLSYETIAEADYV 238

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECM 169
           +  P++    SLN++ A  +  W+  
Sbjct: 239 VRIPMSHDVDSLNVAAAAAVAFWQLR 264


>gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
           M567]
 gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
           M567]
          Length = 328

 Score = 52.4 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 16/163 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV---RV 73
           + L       N+G + R++  F+   + +   R    +  A  +SA A   I       +
Sbjct: 179 VALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNL 238

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L++A     F+                     I L     + + + ++ G E  GL+
Sbjct: 239 TRVLQQAKEQGIFVIGLDGGGD-------------IDLPNLQLASEPLCVVVGSEGKGLS 285

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  + I+S P++    SLN + AV + +++   +   S 
Sbjct: 286 RLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAESH 328


>gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 246

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D   +  A     +  A   +  +RV  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANINATVSKVACGAAETVPLIRVT- 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G  + I+ G E  G+   
Sbjct: 157 ---------NLARTMRALQEQGVWFVGTAGEATQDIYQAKLTGA-LAIVMGAEGDGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + +I  P+     SLN+S A  + ++E +   +  
Sbjct: 207 TRETCDDLIKIPMAGTVSSLNVSVASGVCLFEAVRQRLAQ 246


>gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
           arabaticum DSM 5501]
 gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
           arabaticum DSM 5501]
          Length = 243

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 10  NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           N    P+ IL+ + +   N G + R         + +   R    +     +SA A   I
Sbjct: 87  NKTDDPLFILLDEIKDPHNFGSILRTADAVGAQGVIIPKRRSVGLTSAVGKASAGAIEHI 146

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +V +NL  A+ +L          + N   +      A     +      +GI+ G E
Sbjct: 147 PVAQV-TNLVRAMEEL----------KENRFWIAGADMEAEGFCYQQDLTGPLGIVIGSE 195

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+        + +I  P+     SLN + A  ++++E +   
Sbjct: 196 GAGMRRLVKERCDFLIKLPMKGRINSLNAAVAGAVLMYEALRQR 239


>gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense
           DSM 16994]
          Length = 225

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 13/149 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R+ +   +  L +   +D       R+SS  A  +   + +  
Sbjct: 85  IVVLSSITDMGNIGSLIRSAYALGVQALVISGIKDPNLEAMIRTSSGAALDLP--LVIIH 142

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+ + + +L          + +   +       + + E  F+ + V ++ G E  GL+  
Sbjct: 143 NIHDVLHEL----------KQSGFQIYGAVMDGVDVREASFAAKRV-LVLGNEGEGLSGR 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLM 164
                +  IS P+   F SLN+  A  ++
Sbjct: 192 VQKSLDVGISIPMAHDFDSLNVGVAGAIL 220


>gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
           curvata DSM 43183]
 gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
           curvata DSM 43183]
          Length = 306

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 56/183 (30%), Gaps = 37/183 (20%)

Query: 6   PQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            +L      P+I+         N+G + R+   F    + +          + RS+   A
Sbjct: 147 EELLQRGTPPLIVACDGITDPRNLGAIVRSAAAFGANGVVI---------PERRSAGVTA 197

Query: 65  DCVIDSVRVFSNLKEA-------------IADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
                S    +NL  A              A   F+    +R              AI +
Sbjct: 198 GTWKSSAGTLANLPVAQTTNLTRQLKAYQQAGC-FVAGLDSRG-------------AITV 243

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   +   + ++ G E  GL+       + + + P+     SLN   A  + ++E    
Sbjct: 244 ADLEIADGPLVLVVGSEGKGLSRLVAETCDMLATIPMPGRAESLNAGVAAGIALYEIARR 303

Query: 172 SIV 174
              
Sbjct: 304 RAA 306


>gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 245

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 19/169 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+ S    ++IL       N+G   R         + +   R    +  A   +  A  V
Sbjct: 90  LEGSENPLLLILDGVTDPHNLGACLRNADAAGAAAVIIPKDRAAQLTATASKVACGAAEV 149

Query: 68  IDSVRVFSNLKE---AIAD-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +  VRV +NL     A+ D   +I  T                 A            + I
Sbjct: 150 MPLVRV-TNLARTMRALQDKGVWIVGTAG--------------EATHDIYHSKLTGPLAI 194

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 195 VMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|297155951|gb|ADI05663.1| rRNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 277

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 19/178 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  +    V +L   +   N G V R         + L +      + K+  +S  + 
Sbjct: 106 EEILRARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSL 165

Query: 66  CVIDSV------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             +         R  S L+EA      + A  A  R+    +           +    G 
Sbjct: 166 FHLPVAVGVPVERAVSGLREA--GARVVAADGAGERDLDTEL-----------DEGVLGA 212

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
               IFG E WGL     AL++ ++  P++    SLN++ A  + ++           
Sbjct: 213 PTAWIFGNEAWGLPEPTRALADEVVRVPIHGRAESLNLATAAAVCLYASARAQRAPGG 270


>gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
           DSM 21326]
 gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
           DSM 21326]
          Length = 245

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 21/161 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D   +  A     +  A   +  VRV +
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSANITATVSKVACGAAEAVPLVRVTN 157

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               ++       +   T                 A     +     ++ I+ G E  G+
Sbjct: 158 LARTMRALQEQGVWFVGTAG--------------EATHDIYQAKLTGSLAIVMGAEGDGM 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                   + +I  P+     SLN+S A  + ++E +   +
Sbjct: 204 RRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVRQRL 244


>gi|291531350|emb|CBK96935.1| rRNA methylases [Eubacterium siraeum 70/3]
          Length = 303

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 46/187 (24%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---------- 53
            A +L  +A+    +L +     N G + R+     +    L+ P    P          
Sbjct: 139 RAEELCKNARRIA-VLENIADVSNTGAIIRSAAALGI-DAVLITPSCCDPLCRRAIRVSM 196

Query: 54  -----------SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
                       E      ++    ++S+  F     A+ D                   
Sbjct: 197 GTVFLIPWGYIGEDEHWWQSHGPAYLNSLG-FKTAAMALTDNSVSI-------------- 241

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
                    ++ + S + + II G E +GL+ + I   +  +  P+     SLN+  A  
Sbjct: 242 --------DDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAA 293

Query: 163 LMVWECM 169
           +   E  
Sbjct: 294 VAFRELR 300


>gi|270607381|ref|ZP_06221632.1| rRNA methylase [Haemophilus influenzae HK1212]
 gi|270318140|gb|EFA29373.1| rRNA methylase [Haemophilus influenzae HK1212]
          Length = 105

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%)

Query: 57  ARSSSANADCVIDSVRVFSNLKEAIADLH-----FIYATTARNRNNFKSVLAPKEAAIVL 111
           AR  +  A   +  +RV +NL   + DL      ++  T                 A   
Sbjct: 4   ARKVACGAAETVPLIRV-TNLSRTLRDLQQNHNIWVVGTAG--------------EATET 48

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             +      + ++ G E  G+        + +IS P+     SLN+S A  + ++E 
Sbjct: 49  IYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEI 105


>gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
           DSM 14365]
 gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
           DSM 14365]
          Length = 267

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+        + L   R    S      SA A   I   +V +NL  A+  L
Sbjct: 121 PHNLGAIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQV-TNLARALEQL 179

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   +    + + LA  E A  L     +G  + ++ G E  GL        + +I
Sbjct: 180 --------KQAEVWIAGLAAGEGATSLPAFDATGA-LCLVLGAEGTGLRPLVARTCDFLI 230

Query: 145 SFPVNPL-FPSLNISQAVLLMVWEC 168
             P+      SLN+S A  + ++E 
Sbjct: 231 EIPMLGAGVGSLNVSVAAGVALYEV 255


>gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           furnissii CIP 102972]
 gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           furnissii CIP 102972]
 gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 246

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D     +      +  A   +  VRV  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPMTATVSKVACGAAETVPLVRVT- 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G  + I+ G E  G+   
Sbjct: 157 ---------NLARTMRALQEKGIWFVGTAGEATHDIYQSKLTG-PLAIVMGAEGDGMRRL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + +I  P+     SLN+S A  + ++E +    ++
Sbjct: 207 TRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRSLA 246


>gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 247

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L   +   N+G + R         + +   R    +     +SA A       +V +N
Sbjct: 101 ILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKV-TN 159

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L  A+ DL          +     V A  +    +  ++     +G++ G E  G+    
Sbjct: 160 LTAAMEDL---------KKKGMWFVCA--DMGGDIMYKVNLKGPIGLVVGNEGEGVGKLV 208

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               +   S P+     SLN S A  ++ +E +   ++ 
Sbjct: 209 REHCDMTASIPMKGDIDSLNASVAAGVLAYEIVRQRMMP 247


>gi|149195670|ref|ZP_01872727.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
 gi|149141132|gb|EDM29528.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
          Length = 262

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 22/165 (13%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCV 67
           N     +I+L +    +N+G +AR+     +    LV PR G      +A   S      
Sbjct: 108 NQLDEQIIMLAELSKNDNVGTIARSAAALGVKS-YLV-PRQGPHPYGRRALRVSMGYISR 165

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +  V V+ +L   I++L      + A  A             + AI L+      + V +
Sbjct: 166 L-KVSVYDDLLNTISELQSLGYQVIAAEAS------------QHAIDLSTLEVPNKWV-L 211

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + G E  GL+ +     + ++   ++    S N+  A  +++++ 
Sbjct: 212 LMGHEGLGLSQKVQEACDCVVKIEMDEDIKSFNVGVAAAILMYQM 256


>gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 251

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L + +   N+G + R         + +   R    +     +SA A       +V + 
Sbjct: 107 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 166

Query: 76  --NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++E  A  L F+ A                +       R+     +G++ G E  G+
Sbjct: 167 AKTMEELKARGLWFVCA----------------DMGGESMYRMNLTGPIGLVIGNEGEGV 210

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + + S P+     SLN S A  ++ +E +   
Sbjct: 211 SRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250


>gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 328

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 16/163 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV---RV 73
           + L       N+G + R++  F+   + +   R    +  A  +SA A   I       +
Sbjct: 179 VALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNL 238

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L++A     F+                     I L     + + + ++ G E  GL+
Sbjct: 239 TRVLQQAKEQGIFVIGLDGGGD-------------IDLPNLQLASEPLCVVVGSEGKGLS 285

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  + I+S P++    SLN + AV + +++   +   S 
Sbjct: 286 RLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAESH 328


>gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
 gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
 gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
          Length = 314

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 23/170 (13%)

Query: 10  NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADC 66
           +    P+I+ L       N+G V R++  F    + +   R    +  A  +SA   A  
Sbjct: 160 DEGTDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAART 219

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +       NL  A+         +    A             +    L +       V 
Sbjct: 220 PVARAT---NLTRALEQYQKAGITVVGLAA-------------DGEAELGDLAALDGPVV 263

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I+ G E  GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 264 IVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 313


>gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 257

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 23/176 (13%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS 60
           P   Q+ N   G  ++L   Q   N+G + R           +V  +    + + K   S
Sbjct: 99  PDVNQVTNPKTGAWLLLDRVQDPGNVGTMVRTADAAGFAG--VVASKRTADFFNPKVVRS 156

Query: 61  SANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
              +   +    V ++LK  I D     H +Y T           L P          + 
Sbjct: 157 MQGSQFHLQ--LVVADLKRWINDFQDDQHPVYGT----------QLNP---LAKNFRHVQ 201

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G++  ++ G E  G+  E +  +   +  P+     SLN++ +  +++++  + S
Sbjct: 202 PGKDFALVMGNEGQGMAEELLNQTTTNLYIPMRGNAESLNVAVSAGILMFQLNQGS 257


>gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
           17836]
 gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
           17836]
          Length = 320

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 22/165 (13%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSV 71
             ++ L       N+G + R+   F      LV P  R    S  A  +SA A   I   
Sbjct: 170 PLIVALDGVTDPRNLGAITRSAAAFGAHG-VLV-PERRAASVSASAWKTSAGAAARIPVA 227

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           R  +NL  A+        F+                  +  + L +   +   + ++ G 
Sbjct: 228 R-ATNLNRALKSYKDAGLFVIG-------------LDMDGEVELPDLQAATDPIVLVVGS 273

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL        + I+S P+     SLN   A  + ++E     
Sbjct: 274 EGKGLARLVRENCDLIVSIPMTSATESLNAGIATGVALYEISRRR 318


>gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
          Length = 229

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 15/161 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R      +    +V P+D     +      +  A   +  VRV  
Sbjct: 82  VLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSAPLTATVSKVACGAAETVPLVRVT- 138

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                    +      A        V    EA   + +   +G ++ I+ G E  G+   
Sbjct: 139 ---------NLARTMRALQEKGVWFVGTAGEATHDIYQSKLTG-SLAIVMGAEGDGMRRL 188

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 189 TRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQRMANR 229


>gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42]
 gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42]
          Length = 286

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + L+       S +   ++  +   +   R  + 
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATMGSVFAVPVAR--AT 192

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E +A      +  I AT      +++++   K             +   ++ G E+ G
Sbjct: 193 PEEFLAWRKSAGVS-IVATHLAGAVDYRTIDYRK-------------KPTVLLMGNEQSG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L ++    ++A+   P      SLN++ A  +M++E   + +  +E
Sbjct: 239 LPDQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 284


>gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
 gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
          Length = 252

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 18/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           V +L +    +N+G + R      +  + +   R    +      S  A   ++  RV  
Sbjct: 103 VFVLNEITDPQNLGSILRTADCLGVHGVIIPKRRACGVTPAVVKVSEGAAGYVNVARVTN 162

Query: 75  -SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            ++  E + +    +           +  L                  V ++ G E  GL
Sbjct: 163 IASTLECLKEKGLWVVGADMDGEPYHRVDLT---------------GPVALVIGGEDKGL 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + ++  P+    PSLN + A  ++ +E +   
Sbjct: 208 GRLVREKCDLLVKLPMRGHVPSLNAAVAAAVLGYEILRQR 247


>gi|291533985|emb|CBL07098.1| rRNA methylases [Megamonas hypermegale ART12/1]
          Length = 126

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           Q+  II G E  G+++  +   NA I  P+     SLN++ A  ++++E    +I
Sbjct: 72  QDCAIILGNEANGVSDNLLDKCNAKIYIPMKGDAESLNVANAGSMIMYEYCRQNI 126


>gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 251

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 54/154 (35%), Gaps = 18/154 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +   R    +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++ + T    ++               + +        ++ G E  G++   +  
Sbjct: 169 LKKAGYWFFGTAMEGQDYR-----------YWDAK----GKCVLVIGNEGKGISPLLLKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  ++ P+     SLN S A  +++++ + + +
Sbjct: 214 MDQTLTIPMVGHVQSLNASVATGVLLYQMLNSKM 247


>gi|34393586|dbj|BAC83213.1| putative rRNA methylase [Oryza sativa Japonica Group]
 gi|215686941|dbj|BAG90774.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 343

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            N+    R+     +  + +++  +       R  S  A+  +D + ++S+  E   A+ 
Sbjct: 158 GNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLD-IELWSSTAECFDALK 216

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  ATT    +             V    +   Q   I+ G E  G++++ + LS+ 
Sbjct: 217 KRGYRIATTYLGND------------SVCVYDMDWSQPTAIVVGNELMGISDDALKLSDL 264

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
             S P+  +  S N+S A  +++ 
Sbjct: 265 HCSVPMKGMVDSFNVSVAAGILMH 288


>gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1]
          Length = 305

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 17/182 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P+   L   A   +++L   +   N+G + R+              R   P      +
Sbjct: 136 LEPFLKALPAEAPALIVVLDHVEDPHNLGAIVRSAEAAGAAAAVYSRRRSALPGGTVVKT 195

Query: 61  SANADCVIDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           SA A   +     V V   L +  A   +      R   +      P             
Sbjct: 196 SAGASLRLPMIPVVNVVRTLAQLQAAGFWTVGLEGRAGASLWEDGLP------------- 242

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
              + ++ G E  GL+       + ++  P+     SLN S A    ++E       +S 
Sbjct: 243 -ARLALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVAAAFGMFEWSRTRASASA 301

Query: 178 KN 179
           + 
Sbjct: 302 QG 303


>gi|259506650|ref|ZP_05749552.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
 gi|259165848|gb|EEW50402.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
          Length = 133

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 21/135 (15%)

Query: 42  QLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIADLHFIYATTARNRNNF 98
            L LV P     +EK    +      +  V V +N+++   A+    F + T A      
Sbjct: 8   HLHLVEPLGFDLTEKHLRRAGLDYHDLADVTVHANIEDCFGALPGRIFAFTTQATG---- 63

Query: 99  KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLN 156
                           I       ++FG E  GL +E I      A +  P+     S+N
Sbjct: 64  ------------WFTDITYQPGDALLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMN 111

Query: 157 ISQAVLLMVWECMEN 171
           +S +  +  +E    
Sbjct: 112 LSNSAAVATYEAWRQ 126


>gi|296826196|ref|XP_002850935.1| RNA methyltransferase [Arthroderma otae CBS 113480]
 gi|238838489|gb|EEQ28151.1| RNA methyltransferase [Arthroderma otae CBS 113480]
          Length = 510

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 33/189 (17%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+   F        +P +  P S     ++A A            L  AI D
Sbjct: 327 PGNLGAIFRSAHWFG-ADAIAFSPLNSAPISPVVMKAAAGA------TETVPTL--AIRD 377

Query: 84  LHFIYATTARNRNNFKSVLAPKEAA-------IVLNERIFS------GQNVGIIFGRERW 130
           +      +  N   F +  AP+          I + + + S           ++ G E  
Sbjct: 378 VTTFITASQANGWKFFAADAPEATLTNDYTRKIPVVKSLSSLSTELTKAPCVLMLGGEGS 437

Query: 131 GLTNEEIALSNAIISFPVN---------PLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           GL  +    ++A ++ P               SLN+S A  L+  E   +   S     +
Sbjct: 438 GLQQKIKNRADAFVTIPGAYSDNICDDIAGVSSLNVSVASALLC-EAFLSRPPSGATEAQ 496

Query: 182 EQNTPATKG 190
             +  A   
Sbjct: 497 VSSDAAAGD 505


>gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)]
 gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor
           A3(2)]
          Length = 314

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 22/167 (13%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVID 69
               ++ L       N+G V R++  F    + +   R    +  A  +SA   A   + 
Sbjct: 163 IDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVA 222

Query: 70  SVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                 NL  A+         +    A             +    L +       V I+ 
Sbjct: 223 RAT---NLTRALEQYQKAGITVVGLAA-------------DGEAELGDLAALDGPVVIVV 266

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 267 GSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 313


>gi|258591300|emb|CBE67599.1| putative enzyme [NC10 bacterium 'Dutch sediment']
          Length = 261

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 11/164 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  +N+G + R         L +   R    +     +SA A   +           A+A
Sbjct: 106 QDPQNLGAIIRTAEAAGANGLFIAKHRAAGITPAVAKASAGASEHL-----------AVA 154

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +  + A  A  ++     L    +A+     I     +G++ G E  GLT       + 
Sbjct: 155 RVAGLPAFLAWLKDQGIWTLGADPSAVQSLYEIDLRAPMGVVIGGEHRGLTMLVRQRCDL 214

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           +   P      SLN + A  + ++E         +  V  Q T 
Sbjct: 215 LARIPTRGRVDSLNAAAAAAVFLFEIRRQQSGMKQLPVNAQETA 258


>gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
           27560]
 gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
           27560]
          Length = 247

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 31/177 (17%)

Query: 7   QLQNSAKGPVIILVD-PQLGENIGMVARAMWNF-NLTQLRLVNPRDGWPSEKARSSSANA 64
           + +   + P +IL+D  +   N+G + R   N      + +   R    +     +SA A
Sbjct: 90  KAREKGESPFVILLDDIEDPHNLGAIIRT-ANLAGAHGVIIPKHRASGLTATVAKTSAGA 148

Query: 65  DCVIDSVRVFS---NLKEAIAD-----LHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                  +V +    ++E   +        +  TT  + +                    
Sbjct: 149 LNYTPVAKVTNISKTIEELKKEGMWFVCADMGGTTMYDLDLK------------------ 190

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              ++G++ G E  G++       + + S P+     SLN S A  ++ +E +   +
Sbjct: 191 --GSIGLVIGNEGKGVSRLVKEKCDFVASIPMFGDIDSLNASVATGVLAYEIVRQRM 245


>gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
 gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
          Length = 250

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R         + +   R    +     +S  A   +  VRV    
Sbjct: 102 ILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLA 161

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+   +++ +               +   + II G E  G+  
Sbjct: 162 QTVDELKERGVWIAGTDAKGSVDYRKM--------------DATLPLAIIIGSEGKGMGR 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                 + +   P+     SLN S A  L+++E       + E
Sbjct: 208 LLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEAIE 250


>gi|57237161|ref|YP_178173.1| RNA methyltransferase [Campylobacter jejuni RM1221]
 gi|86151169|ref|ZP_01069384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315123758|ref|YP_004065762.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|57165965|gb|AAW34744.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
 gi|85841516|gb|EAQ58763.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|284925446|gb|ADC27798.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315017480|gb|ADT65573.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315057593|gb|ADT71922.1| rRNA methylase [Campylobacter jejuni subsp. jejuni S3]
          Length = 227

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +   +    E    +S+ A   +    + +
Sbjct: 85  IVMLYGISDVGNIGAITRTAYALGVGALIFIG--EKLAMEGVIRTSSGAALDLPIA-ISN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            I   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IIKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
          Length = 303

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 46/187 (24%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---------- 53
            A +L  +A+    +L +     N G + R+     +    L+ P    P          
Sbjct: 139 RAEELCRNARRIA-VLENIADVSNTGAIIRSAAALGI-DAVLITPSCCDPLCRRAIRVSM 196

Query: 54  -----------SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
                       E      ++    ++S+  F     A+ D                   
Sbjct: 197 GTVFLIPWGYIGEDEHWWQSHGPAYLNSLG-FKTAAMALTDNSVSI-------------- 241

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
                    ++ + S + + II G E +GL+ + I   +  +  P+     SLN+  A  
Sbjct: 242 --------DDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAA 293

Query: 163 LMVWECM 169
           +   E  
Sbjct: 294 VAFRELR 300


>gi|254480165|ref|ZP_05093413.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
 gi|214039727|gb|EEB80386.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
          Length = 215

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 57/152 (37%), Gaps = 16/152 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA--DL 84
           N+  + R      + ++  V   + + + +  +  ++    +D+ +  +   +A+     
Sbjct: 11  NLSAIVRNCDAVGIQRMHAVIGTEDYKTFRGTAMGSHHWVDVDTHQNPAVALDALKASGY 70

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             + A               ++AA     ++      GI+ G ER G++   +   +  I
Sbjct: 71  QLVAA------------HFDEQAADY--RQVDYTLPTGILMGAERRGVSAIALERVDRCI 116

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + P+  +  S N+S A  +++ E       + 
Sbjct: 117 TIPMVGMVESYNVSVAAGIILAEAQRQREAAG 148


>gi|27367045|ref|NP_762572.1| RRNA methylase [Vibrio vulnificus CMCP6]
 gi|27358613|gb|AAO07562.1| RRNA methylase, putative [Vibrio vulnificus CMCP6]
          Length = 173

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 22/172 (12%)

Query: 13  KGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVID 69
             P +I  L +P+   N+G V RA   +N  Q+R         +    S +A       +
Sbjct: 3   TEPTVIIGLHNPKSPTNVGAVMRAAGCYNAAQVRY--------NGTRYSRAARFQTDTQN 54

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           S      L+  + DL      TA    + + V                 +    +FG E 
Sbjct: 55  SHERIDLLE--MEDL------TASLDGDVEIVCVELVVGATALPHFAHPEKAIYLFGPED 106

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             L  E +  ++ ++  P +     +N++  V +++++ +  ++ S + + +
Sbjct: 107 GSLPQEVVDKAHHVVYIPTHGC---MNLAATVNVVMYDRLAKTLDSIDDHAQ 155


>gi|256845158|ref|ZP_05550616.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294785543|ref|ZP_06750831.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
 gi|256718717|gb|EEU32272.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294487257|gb|EFG34619.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
          Length = 258

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 24/169 (14%)

Query: 10  NSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
           N  K P    +IL D     N+G + R     N   + L        +EK   ++  +  
Sbjct: 101 NDLKSPSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSIL 160

Query: 65  ---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                 ++   + + LKE                NN+  +    +   +   +I   +  
Sbjct: 161 NVNLYYLEKSEIINFLKE----------------NNYSIISTYLDKTAIPYNKIKLKEKN 204

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            IIFG E  G++++ I +++     P+     SLN++ A  +++++  E
Sbjct: 205 VIIFGNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 253


>gi|237804750|ref|YP_002888904.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273050|emb|CAX09963.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 269

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 28/158 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF------SN 76
           +   NIG + R      +  + L +P     +     SS           VF      ++
Sbjct: 126 EKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLG--------TVFTMPVWQAS 177

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LKE +  +H               V     +A          Q + ++FG E+ GL+ + 
Sbjct: 178 LKEVLDLVH----------QQEWQVFTTIPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDW 227

Query: 137 I--ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  +  N  I+ P+     SLN+S +V  + +E +   
Sbjct: 228 LNGSFCN--IALPMLGKADSLNLSSSVAAVAYEVVRQR 263


>gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7]
 gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7]
          Length = 246

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 19/159 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           IL       N+G   R      +  + +  P+D      A     +  A           
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGVTAVVSKVACGA------AETVP 152

Query: 76  NLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +          A T R         V    EA   L +    G  + I  G E  GL 
Sbjct: 153 LFQ------VTNLARTMRHLQEKGVWIVGTAGEADCELYQADLKG-PLAIAMGAEGKGLR 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + ++S P+     SLN+S A  + ++E +   
Sbjct: 206 RLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQR 244


>gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 278

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R R      L P   A+ L E   +G+ V ++ G E  GLT   +  ++     P+ P  
Sbjct: 199 RERGFQLISLTPNPEAVTLAE-AMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGT 257

Query: 153 PSLNISQAVLLMVWE 167
            SLN++ A  +  +E
Sbjct: 258 DSLNVATAAAMAFYE 272


>gi|300932909|ref|ZP_07148165.1| putative rRNA methylase, SpoU class [Corynebacterium resistens DSM
           45100]
          Length = 180

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N + G  ++   PQ+  N G   R       T L L  P      EK    +      + 
Sbjct: 2   NDSSGLHVLFDRPQIPPNTGNAIRMCAGTGAT-LHLAGPLGFNFEEKHVRRAGLDYHDLA 60

Query: 70  SVRVFSNLKEA---IADL-HFIYATTARNRNNFKSVLAPKEAA-----IVLNERIFSGQN 120
            V++  ++ +A   +        A++  +     S    +  A           +     
Sbjct: 61  DVKLHDSVWDAFDSLCGCLPRSAASSLTDATRPLSSAPSRVFAFTTKGEKWFTDVAYQPG 120

Query: 121 VGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQ 159
             ++FG E  GL  + +        +  P+ P   S+N+S 
Sbjct: 121 DVLLFGPEPTGLDEDVLNDPRVTEWVRIPMLPGRRSMNLSN 161


>gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC
           35896]
          Length = 242

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            +  G ++IL + +   N+G + R+     +  + L   R    +     +SA A   + 
Sbjct: 89  QNKTGFLLILDEIEDPHNLGALIRSAEGAGVDGVILPKRRSATVNATVEKTSAGAVSYMK 148

Query: 70  SVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             RV +    ++    + +++Y                 +       +     N+ I+ G
Sbjct: 149 VARVTNISQTIELLKKENYWVYGL---------------DMDGTEYTQNDWSGNIAIVVG 193

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G+        + I+S P+     SLN S A  ++++E  +  
Sbjct: 194 NEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILFEASKQR 239


>gi|300775607|ref|ZP_07085468.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300505634|gb|EFK36771.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 226

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID------SVRVFSNLKEA 80
           N   + R++      +  +V  ++ +  E     +  AD  ++      ++  F N+K+ 
Sbjct: 48  NAAAIVRSVEACGFHK--VVALQEEYSFEPNLRVTKGADTWVEVEKLPRNMESFQNIKD- 104

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                         R      ++ ++ A +L E   + + + ++FG E  G++ E +  +
Sbjct: 105 --------------RRYKIVAVSLEKNAKMLPEYEVT-EPIALVFGTEMEGVSQEILDFA 149

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +  ++ P+     S N+S A  + ++E  +
Sbjct: 150 DETLAIPMYGFTRSFNVSVAASICMYELKQ 179


>gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 293

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            +  G V++L       N+G + R    F++  +                +++     ++
Sbjct: 143 PTRSGVVLVLDQITDPHNVGAIVRTAAAFDVDAIVTTERHAPALGGVLAKAASGG---LE 199

Query: 70  SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            V++    NL  A+        T  R       + +    A     ++   + + ++ G 
Sbjct: 200 HVQIVPVVNLARALE-------TLGRLNYLRVGLDSA---AEADFTQLPLQRPIALVLGG 249

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E  GL        + +    +     SLN+S A  +++
Sbjct: 250 EGTGLRRLTREKCDFLARLDMPGKIKSLNVSNACAVVL 287


>gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 229

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                + G E+WGL+     L +A I  P+  +  SLN+S A   +++E +    VS   
Sbjct: 114 GPTAFVLGAEKWGLSEPATRLMDAAIYIPMRGMVQSLNVSVAASALLFEALRQREVSGTL 173

Query: 179 NVKEQNTP 186
               +  P
Sbjct: 174 PQNGEGLP 181


>gi|158336981|ref|YP_001518156.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158307222|gb|ABW28839.1| RNA methyltransferase, trmH family [Acaryochloris marina MBIC11017]
          Length = 279

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +N  +  G ER GL+ ++ +L N ++  P+     SLN++ A  L ++E + + ++ S
Sbjct: 216 KNTLLFLGEERTGLSPKQRSLCNTLLKIPMVGQVDSLNVAVAGSLFIYEVLRSRMLDS 273


>gi|50843004|ref|YP_056231.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
 gi|289426359|ref|ZP_06428102.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|295131075|ref|YP_003581738.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|50840606|gb|AAT83273.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
 gi|289153087|gb|EFD01805.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|291376146|gb|ADE00001.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|313763557|gb|EFS34921.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA1]
 gi|313793949|gb|EFS41973.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA1]
 gi|313801336|gb|EFS42587.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA2]
 gi|313811547|gb|EFS49261.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA1]
 gi|313813395|gb|EFS51109.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA1]
 gi|313816737|gb|EFS54451.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA1]
 gi|313829433|gb|EFS67147.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA2]
 gi|313839942|gb|EFS77656.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL086PA1]
 gi|314914711|gb|EFS78542.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA4]
 gi|314919328|gb|EFS83159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA1]
 gi|314920763|gb|EFS84594.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA3]
 gi|314930642|gb|EFS94473.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL067PA1]
 gi|314954402|gb|EFS98808.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA1]
 gi|314957514|gb|EFT01617.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA1]
 gi|314963698|gb|EFT07798.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA1]
 gi|315079548|gb|EFT51541.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA2]
 gi|315081223|gb|EFT53199.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL078PA1]
 gi|315099183|gb|EFT71159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA2]
 gi|315100333|gb|EFT72309.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA1]
 gi|315106854|gb|EFT78830.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA1]
 gi|315108983|gb|EFT80959.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA2]
 gi|327334215|gb|EGE75929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL097PA1]
 gi|327452027|gb|EGE98681.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL092PA1]
 gi|327454935|gb|EGF01590.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA3]
 gi|327457778|gb|EGF04433.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA2]
 gi|328755231|gb|EGF68847.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA1]
 gi|328758289|gb|EGF71905.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA2]
          Length = 269

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R           L+ PR   P   +A  +S      +   R+      L E + 
Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A  A + ++    +   E +  L +     + V ++ G E  GL+   I+ ++ 
Sbjct: 189 DHGFTVAAMALSGDS----VTLDEFSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 241

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
           ++  P+     SLN++ A  +  +E  
Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELR 268


>gi|227877175|ref|ZP_03995249.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842729|ref|ZP_05548217.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256848961|ref|ZP_05554395.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|262045696|ref|ZP_06018660.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|293380174|ref|ZP_06626256.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus 214-1]
 gi|295692528|ref|YP_003601138.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus
           crispatus ST1]
 gi|312977747|ref|ZP_07789494.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
 gi|227863229|gb|EEJ70674.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614149|gb|EEU19350.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256714500|gb|EEU29487.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|260573655|gb|EEX30211.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|290923218|gb|EFE00139.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus 214-1]
 gi|295030634|emb|CBL50113.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus ST1]
 gi|310895486|gb|EFQ44553.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
          Length = 186

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 18/183 (9%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V  R
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDVR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +L   +         T    +    +           +     +N   +FG+E  GL
Sbjct: 60  RHDDLNAFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
               +    +  +  P++      N+S +V +++ E +      + +          K +
Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETTHHYENDKLKDD 171

Query: 192 LLS 194
              
Sbjct: 172 YDR 174


>gi|224282928|ref|ZP_03646250.1| tRNA/rRNA methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064212|ref|YP_003970937.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
           PRL2010]
 gi|313140087|ref|ZP_07802280.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|310866531|gb|ADP35900.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
           PRL2010]
 gi|313132597|gb|EFR50214.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 292

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN--------- 76
           N+G + R+    ++    LV P  G P   +A   S      I   R+  +         
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRG 195

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L+E  +      A    + +     L  +       E       + +IFG E  GL+   
Sbjct: 196 LEELRSLGFTTVAMALSDDSISLDELTRRLNNS--PESADHIDKLALIFGTEGDGLSRHT 253

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           IA ++  +  P++    SLN++ +  +  +
Sbjct: 254 IAGADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429]
 gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho
           melanesiensis BI429]
          Length = 238

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRV 73
           +IL   Q   N G + R         L +        +      S        +I+   +
Sbjct: 90  VILDQIQDPHNFGAIIRTSVAAGADALVIPKNNSVKVTPTVVKVSVGTLFKTNIIEVTNI 149

Query: 74  FSNLKEAIADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            +   E I  L  ++Y      +  FK  L                + V I+ G E  G+
Sbjct: 150 -ARFIEKIKTLGIWVYGAAMDGKEYFKVDL---------------KKPVAIVLGNEGNGI 193

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                   + +IS P+     SLN+S +  ++++E    
Sbjct: 194 RENVKNKCDDLISIPMKNNVESLNVSVSAGILLYEVYRQ 232


>gi|163789140|ref|ZP_02183583.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
           ALC-1]
 gi|159875553|gb|EDP69614.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
           ALC-1]
          Length = 218

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 20/144 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N   V R+   F + +L +V   +    ++  +    A   +D  R  S  K  I  L 
Sbjct: 44  HNASAVMRSCDVFGIQELNIVEEVNSKSIDREIAM--GAQKWVDLNRFHST-KSCIDHLK 100

Query: 86  F----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                I ATT            P      L +   + +     FGRE  GL+ + I  ++
Sbjct: 101 TKGYQIVATT------------PHAEDCDLIDFDIT-KKSCFFFGRETEGLSQQVIDEAD 147

Query: 142 AIISFPVNPLFPSLNISQAVLLMV 165
             +  P+     SLNIS +  +++
Sbjct: 148 CFLKIPMVGFTESLNISVSAAIIL 171


>gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
 gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
 gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 261

 Score = 52.4 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L + Q   N+G + R       T + L        + K   S+  A   I  +    
Sbjct: 111 VLVLENIQDPGNLGTIFRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               + E   +   +YA   +  N++              +          + G E  GL
Sbjct: 171 LKGTIDELKREGITVYAAHLKGENSY--------------DMEDYKTACAFLIGNEGNGL 216

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           T E  A ++  I  P+     SLN + A  ++++E     
Sbjct: 217 TEETAACADRKILIPMEGGAESLNAAVASAVLMFEAGRQR 256


>gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 278

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R R      L P   A+ L E   +G+ V ++ G E  GLT   +  ++     P+ P  
Sbjct: 199 RERGFQLISLTPNPGAVTLAE-AMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGT 257

Query: 153 PSLNISQAVLLMVWE 167
            SLN++ A  +  +E
Sbjct: 258 DSLNVATAAAMAFYE 272


>gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
 gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
          Length = 254

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   N+G + R    F +  + L        S K   S   ++  +  ++   +L E I 
Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175

Query: 82  ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                    +Y T                      +++   ++  II G E  G++ E +
Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +L++  +  P+     SLN+  A  ++++
Sbjct: 222 SLTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|283955600|ref|ZP_06373093.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792825|gb|EFC31601.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 227

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +           R+SS  A  +   + + +
Sbjct: 85  IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|157414470|ref|YP_001481726.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385434|gb|ABV51749.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747114|gb|ADN90384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931966|gb|EFV10919.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 227

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +           R+SS  A  +   + + +
Sbjct: 85  IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
 gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
          Length = 256

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 21/165 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDS 70
              +++L       N+G   R           ++ P+D     +      ++ A   +  
Sbjct: 105 TPLLLVLDGVTDPHNLGACLRVADGAGAH--AVIAPKDRSVGLNTTVAKVASGAAETVPY 162

Query: 71  VRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + V +    L+E      ++  T        K++                   + I+ G 
Sbjct: 163 ITVTNLARTLRELQERGIWVVGTA---DGTDKTLYDVDLKGP-----------MAIVMGA 208

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+        + ++  P+     SLN+S A  + ++E +   
Sbjct: 209 EGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCLYEAVRQR 253


>gi|86149717|ref|ZP_01067947.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597269|ref|ZP_01100504.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561834|ref|YP_002343613.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839985|gb|EAQ57244.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190330|gb|EAQ94304.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359540|emb|CAL34324.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315928789|gb|EFV08060.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 227

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +           R+SS  A  +   + + +
Sbjct: 85  IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|303327802|ref|ZP_07358242.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
 gi|302862163|gb|EFL85097.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
          Length = 239

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 61/154 (39%), Gaps = 15/154 (9%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++      ++L +     N+  + R+   F L+++ L      +P+   ++S++    V
Sbjct: 60  LRHRQNDLTLVLANIHDPHNVSAIYRSCDAFGLSKVHLYYTNTPFPTLGRKTSASARKWV 119

Query: 68  I-DSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  +  ++L   +    F + AT+       + +                 +   +I 
Sbjct: 120 ESERHKNSADLMRTLRGQGFQVLATSCS--ETARPLRDWDFI-----------RPTAVIM 166

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           G E  G+  E ++L++  +  P+  +  S N+S 
Sbjct: 167 GNEHSGVEEELLSLADGQLYIPMYGMIQSFNVSV 200


>gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
 gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
          Length = 254

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   N+G + R    F +  + L        S K   S   ++  +  ++   +L E I 
Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175

Query: 82  ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                    +Y T                      +++   ++  II G E  G++ E +
Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +L++  +  P+     SLN+  A  ++++
Sbjct: 222 SLTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|148544812|ref|YP_001272182.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|184154155|ref|YP_001842496.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363952|ref|ZP_03848053.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
 gi|325683156|ref|ZP_08162672.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148531846|gb|ABQ83845.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|183225499|dbj|BAG26016.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071007|gb|EEI09329.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
 gi|324977506|gb|EGC14457.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 290

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS----VRVFSNLKEA 80
             NIG + R+     +  + + +        +A   +      +       +V+ +  E 
Sbjct: 146 PTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQS--EG 203

Query: 81  IADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +  LH     TA    R+N   +  P         ++     + II G E  GL    I 
Sbjct: 204 VDLLHRAGYKTAAMALRHNTVDIDDP---------QLAEVDRLAIILGSEGPGLRENTIT 254

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            S+  I  P+     SLN++ A  L  WE 
Sbjct: 255 QSDFTIKIPMATGVDSLNVAAASALAFWEL 284


>gi|89890886|ref|ZP_01202395.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
           bacterium BBFL7]
 gi|89517031|gb|EAS19689.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
           bacterium BBFL7]
          Length = 271

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 23/166 (13%)

Query: 13  KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           K P+I++ + P+   N+G + R      +  + + NP     +     SS      + + 
Sbjct: 120 KNPLILIAESPEKPGNLGAILRTADAAKVDAVIIANPVADLFNPNVVRSSVGCVFTVPTA 179

Query: 72  -----RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                 V   LK    +++  YA T ++   + ++                     I  G
Sbjct: 180 TGTTSEVVDFLKS--KNINL-YAATLQSSERYDTMDY--------------TSGSAIALG 222

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GLT E    +   I  P++    S+N+S +  ++++E     
Sbjct: 223 TEATGLTQEMRDAAMQNIIIPMSGTIDSMNLSVSAAILIFEAKRQR 268


>gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3]
 gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3]
          Length = 246

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 19/159 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           IL       N+G   R      +  + +  P+D      A     +  A           
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTAVVSKVACGA------AETVP 152

Query: 76  NLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +          A T R         V    EA   L +    G  + I  G E  GL 
Sbjct: 153 LFQ------VTNLARTMRHLQEKGVWIVGTAGEADCELYQADLKG-PLAIAMGAEGKGLR 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + ++S P+     SLN+S A  + ++E +   
Sbjct: 206 RLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQR 244


>gi|227536035|ref|ZP_03966084.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243932|gb|EEI93947.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 177

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 3   PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P     +  +K PV+ +L + +   N+G   R    F + ++ L       P  +   ++
Sbjct: 12  PDVETFKKQSKIPVVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTA 71

Query: 62  ANADCVIDSVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFS 117
             A   +D      +L     A+ D                  +   E +++L++    S
Sbjct: 72  LGATSSVDW-EHAPDLISRLNALKD-----------EGYQILAIEQAEGSVMLHQFEPSS 119

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            Q    +FG E  G+  E + +S+  +  P      S NIS  + +++W
Sbjct: 120 DQKYAFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLW 168


>gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           1_1_41FAA]
 gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           1_1_41FAA]
          Length = 234

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L +  K  V+IL + Q   N G + R+   F +  L L+  R+    +E    +S  A
Sbjct: 80  EELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKV-DLILIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y        N+     P                
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEASINYNEEDYP--------------NK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + ++ G E  G+  +     + ++  P+     SLN+S A  +++
Sbjct: 184 IVLVLGNEGSGIRKKVREHCDKLVKIPMFGQINSLNVSVASGILL 228


>gi|162448040|ref|YP_001621172.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161986147|gb|ABX81796.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 233

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 23/160 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRV 73
           +++L D Q  +N+G + R+   FN   +   N      ++K   +S  A  D  I+ + +
Sbjct: 93  ILVLDDVQNPDNVGAILRSALAFNFMHVVFSNHTADLYNDKTIRASGGALFDLYIERLDI 152

Query: 74  FS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                LK+   + + ++       +  KS L P +    +           ++ G E  G
Sbjct: 153 HEFITLKK--QNGYQVFGA-----DAHKSELEPDKTKPFI-----------LVLGNEGQG 194

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           L ++ I L +  ++   +    SLN++ A  ++++E  + 
Sbjct: 195 LRSKTIELLDGRLNIETH-HVESLNVTVAGSILMYEWSKQ 233


>gi|148926322|ref|ZP_01810006.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844714|gb|EDK21819.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 227

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +           R+SS  A  +   + + +
Sbjct: 85  IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLTMEGVIRTSSGAALDLP--IVISN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            I   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IIKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
           F0304]
 gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
           F0304]
          Length = 326

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 10/150 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L      +N+G V R+   F  + + L   R    +  A   SA A   +   RV  N
Sbjct: 177 IALDGVTDPQNLGAVIRSAAAFGASGVILPERRSASVTAAAWKVSAGAAAHMPVARVV-N 235

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L +AI         + + R  +   L     A  +    F    + ++ G E  G++   
Sbjct: 236 LTKAID--------SLKERGFYSIGLDGGGTA-QVGYSGFETDPLIVVLGSEGKGISRLV 286

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +AI+S P+  L  SLN S A  + ++
Sbjct: 287 REQCDAIVSIPMTSLVESLNASVAAGIALF 316


>gi|268608625|ref|ZP_06142352.1| hypothetical protein RflaF_03872 [Ruminococcus flavefaciens FD-1]
          Length = 214

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 18/173 (10%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P A +L    K   ++  +V+P    N+G + R+     +  + L +        ++   
Sbjct: 52  PSAEELCRGKKRIAVLENVVNPT---NMGAIFRSAAALGMEAVILTSDCTDPLYRRSSRV 108

Query: 61  SANADCVIDSV---RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S      +             + +  L +  A  A  ++N   +           +R+ S
Sbjct: 109 SMGTVFQVPWTIMKCRNEEYPDILHGLGYKMAAMA-LKDNSVDIDD---------DRLNS 158

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            + + +I G E  GL +  I   +  +  P+     SLN++ A  +  W+  +
Sbjct: 159 EEKLAVIMGTEGEGLADHTIDACDYTVKIPMYNGVDSLNVAAASAVAFWQLGK 211


>gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. SIP3-4]
 gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. SIP3-4]
          Length = 260

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+     +  + L        S KA      A  V+  V     L     
Sbjct: 122 QDPGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDLL----- 176

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                 A T    N     LA       L E+    Q V  + G E  GL+ +  A ++ 
Sbjct: 177 ------ALTG---NFPGETLATVMQGESLYEQDLR-QPVAFLIGNEGAGLSLKLQAAASR 226

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I  P+     SLN + A  + V+E +  ++   
Sbjct: 227 KIHIPMQGQVESLNAAAATSICVFERLRQNLNQG 260


>gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC
           13124]
          Length = 257

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 13  KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            G +++LVD  Q   N+G + R         + +        ++K   S+  +   I   
Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +       L F+    +  +  +K V++  +      E    G  V I  G E  G
Sbjct: 165 -IVED-----NSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +++E   +++  +  P+     SLN++ A  +M++E +  S
Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255


>gi|159490732|ref|XP_001703327.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
 gi|28207743|gb|AAO32614.1| CR004 protein [Chlamydomonas reinhardtii]
 gi|158280251|gb|EDP06009.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
          Length = 316

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 11/156 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  V R         +  VN  DG   + ++ ++A AD  +D V+ + +  E +A   
Sbjct: 103 GNLAAVCRTADALGYGAVHAVNKADGKF-KMSQRTAAGADKWLD-VKAWDSTGECLA--- 157

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
              A  A       + L     + +  + +   +   ++ G E++G++ E +A ++A   
Sbjct: 158 ---AMKAAGYQIVTTHLT---QSSITIQEVDWTRPTAVVLGNEKFGVSAEAVAAADACAI 211

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            P+  +  S NIS A  L+++E  +  I     +  
Sbjct: 212 IPMTGMVESFNISVANALILYEAQQQRIRRLGSHAD 247


>gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
 gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
          Length = 278

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 26/178 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRL---VNPRDGWPSEKARSSSANADCVIDSVRVF 74
           +L   Q   N+G + R     ++  + L   V+P       K+  +SA A   +   R  
Sbjct: 113 VLDRIQDPGNLGTLLRTALAADVQNVWLGSGVDP----LGSKSLRASAGALLQLPHHRFG 168

Query: 75  SNLKEAIADLH-----------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +   AI+ L             + AT             P          +       +
Sbjct: 169 PDEDTAISQLTDELKRLAAGGMQVVAT------LVPGSQVPIRPVPYW--ELNWRLPTAL 220

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           + G E  GL  E +A     ++ P +    SLN++ A + ++ E    ++ ++ +   
Sbjct: 221 VLGTEGAGLHPELLACCTHAVTLPHSSRVESLNVAAAAVPLLLERRRATMTATTQQSG 278


>gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           fusiformis ZC1]
 gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           fusiformis ZC1]
          Length = 250

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R         + +   R    +     +S  A   +  VRV    
Sbjct: 102 ILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLA 161

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+   +++ +               +   + II G E  G+  
Sbjct: 162 QTIDELKERGIWIAGTDAKGSADYRKM--------------DATLPLAIIIGSEGKGMGR 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                 + +   P+     SLN S A  L+++E       + E
Sbjct: 208 LLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEAIE 250


>gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934478|ref|ZP_06339733.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301425|gb|EFA93714.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 255

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 15/144 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82
             NIG + R         + L        + K + +   +   I      +   +++   
Sbjct: 122 PGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHIPIIKADLLKTIEQFKE 181

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +   +YA+          VL  +   +   E+    + + +I G E  G++ + + L++ 
Sbjct: 182 NYIPVYAS----------VLDDEAKELPDFEKT---KELALIIGNEANGVSGDAVNLADE 228

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN + A  +M++
Sbjct: 229 KLFIPIKGQAESLNAAIAAGIMIY 252


>gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 249

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 19/173 (10%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++L+    Q   N+G   R+     +T + +   +    +   R +SA A 
Sbjct: 91  LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSASVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             I  V V +     +A            R+  K  +     A      ++S     NVG
Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ G E  GL        + ++  P+     SLN+S A  + ++E +   + +
Sbjct: 197 LVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEVVRQRLGA 249


>gi|110180258|gb|ABG54368.1| YibK [Klebsiella pneumoniae]
          Length = 147

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 44/164 (26%)

Query: 25  GENIGMVARAMWNFNLT---------------QLRLVNPRDGWPSEKARSSSANADCVID 69
             N G + R   N   +               +LR    R G    +  +   +AD    
Sbjct: 1   PPNTGNIIRLCANTGFSLAYHLSRWASPWDDKRLR----RAGLDYHEFTAVQRHADY--- 53

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                ++     A    ++A T +          P  +A      +       ++FG E 
Sbjct: 54  -AAFVAS-----AQPQRLFALTTKG--------TPAHSA------VSYQDGDFLMFGPET 93

Query: 130 WGLTNEEIALS--NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            GL    +        I  P+ P   S+N+S AV ++V+E    
Sbjct: 94  RGLPASILDALPPEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 137


>gi|146302323|ref|YP_001196914.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146156741|gb|ABQ07595.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 165

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 20/148 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVN------PRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           NIG + R    F +  +  +       PR    + ++         + ++  + + L+E 
Sbjct: 29  NIGSLFRISEAFGVENIIFLGKDIPLTPRKINKTSRSTHLHVPHQIIEETTELTAYLQE- 87

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
             +   I      N    K VL PK+            +   ++ G E  G++ E + +S
Sbjct: 88  -NNFEIIALEITSNSKPLKEVLIPKD------------KKTALLIGSEIAGISEELLKIS 134

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + I+   +     S+N+ QA  + ++E 
Sbjct: 135 HQIVHINMFGKNSSMNVVQAASIALYEI 162


>gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 289

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 23/150 (15%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS------NLKE 79
           EN+G + R      +  +   +        +A   S     ++   R          LKE
Sbjct: 135 ENLGAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKE 194

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEI 137
                  +              + P+ +A  L E      G  V ++ G E  GLT   +
Sbjct: 195 --NGFRLLA-------------MTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAAL 239

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            LS+  +  P++    SLN++ A  L  +E
Sbjct: 240 RLSDVRVRIPMSRGTDSLNVATAAALAFYE 269


>gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4]
 gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4]
          Length = 246

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 19/159 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRVFS 75
           IL       N+G   R      +  + +  P+D      A     +  A           
Sbjct: 101 ILDGVTDPHNLGACLRNADAAGVQGIIV--PKDNSVGLTAVVSKVACGA------AETVP 152

Query: 76  NLKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +          A T R         V    EA   L +    G  + I  G E  GL 
Sbjct: 153 LFQ------VTNLARTMRHLQEKGVWIVGTAGEADCELYQADLKG-PLAIAMGAEGKGLR 205

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + ++S P+     SLN+S A  + ++E +   
Sbjct: 206 RLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEAVRQR 244


>gi|320332674|ref|YP_004169385.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319753963|gb|ADV65720.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
           21211]
          Length = 217

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 83/226 (36%), Gaps = 33/226 (14%)

Query: 1   MTPY-----APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP         L        +++ +     N   + R+     + +   V P++G    
Sbjct: 1   MTPERFEKLKRVLSQRQPTLTVLMEEVNKPHNFSAILRSCDAVGVWEAHAVPPKNGKLP- 59

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAI 109
              ++++ +      V+  ++   A+ +L      + AT  +AR+ +             
Sbjct: 60  -TYNATSGSAEKWVRVQSHADAPSAVRELQGRGFQVLATHLSARSVDYR----------- 107

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                +   +   ++ G E+WG++ E    ++A +  P+  +  SLN+S A   +++E  
Sbjct: 108 ----ELDYTRPTCVLLGAEKWGVSEEAADAADANVVIPMLGMVQSLNVSVACATILFEAQ 163

Query: 170 ENSIVSSEKNVKEQNTPATKGELLSF---LDYLEISLEERGYFRPV 212
              + +      +   P  + + + F      L  +  ERG   P 
Sbjct: 164 RQRLAAGLY--GQAPFPPDEFDRVLFEWAYPDLADTYRERGEPYPA 207


>gi|269977219|ref|ZP_06184192.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|269934522|gb|EEZ91083.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
          Length = 307

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83
           N+G   R+    N     LV P    P   +A   S           ++ + +     AD
Sbjct: 169 NVGAAVRSAAACN-YDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPD-----AD 222

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L                 +  ++ A  L     S + V ++ G ER GL    +A ++ +
Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLA--GDSTRKVALVAGAERDGLKRSTVAKADYV 280

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME 170
           +   +     SLN++ A  +  W   +
Sbjct: 281 VRIEMAHGVDSLNVAGACAVACWAIAQ 307


>gi|319957276|ref|YP_004168539.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319419680|gb|ADV46790.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 260

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 13/156 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L      EN+G +AR+     +    +V      P  +     +        V  + 
Sbjct: 113 VVMLTRLNNLENVGAIARSAAALGVGG-YVVPSSGPHPYGRRAIRVSTGHVTRLKVHCYE 171

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNERIFSGQNVGIIFGRERWGLT 133
           ++ +          T  R R    ++LA +    A+ L       +   +I G E  G+ 
Sbjct: 172 DILQ----------TMERLRELGYTLLAAEATPEAVPLARFGPVPKRWALILGNEEEGVP 221

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            E +   +A++   + P   S N++ A  ++++   
Sbjct: 222 EEVLEKCDAVLQIEMEPGIKSFNVATAGAIIMYRLR 257


>gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
 gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
          Length = 254

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   N+G + R    F +  + L        S K   S   ++  +  ++   +L E I 
Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175

Query: 82  ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                    +Y T                      +++   ++  II G E  G++ E +
Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +L++  +  P+     SLN+  A  ++++
Sbjct: 222 SLTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|148271834|ref|YP_001221395.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829764|emb|CAN00682.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 219

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 15/151 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R+   F    + +V  R  W    A  +          V   + + + + 
Sbjct: 81  QHDMNIGSIVRSANAFAADTVHIVG-RRRWNKRGAMVT-----DRYQHVVHHATIDDLVE 134

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    AR        +   +   VL E     +   ++FG+E  GL++E +A ++ 
Sbjct: 135 --------WARGEGLPIIAIDNVD-GSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADM 185

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++        S+N S A  +++   +   +
Sbjct: 186 TVAISQFGSTRSINASAAAAVVMHAWVMQHV 216


>gi|89357372|gb|ABD72531.1| prespore-specific protein-like [Physarum polycephalum]
          Length = 127

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 52  WPSEKARSSSANADCVIDSVRVFSNLKEAI--------ADLHFIYATTARNRNNFKSVLA 103
             +  A  ++      +D   + +N ++AI             I  T++    N  S+ +
Sbjct: 2   PLTPAAYRTAQGGAESVDIAAI-NNEEQAISVIKKLKQKGCK-IITTSSHFTENTTSIYS 59

Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
           PK      +E       V ++ G ER G++    A ++A I  P      SLN+ QA  +
Sbjct: 60  PK-----ASEVFLPTHPVVLLVGNERDGVSPALAAQADASIRIPSTGWVESLNVVQAAAV 114

Query: 164 MVWECMENSIVS 175
           +  E       S
Sbjct: 115 IFGELWRARGGS 126


>gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
           PB013-T2-3]
 gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
           PB013-T2-3]
          Length = 248

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R      +  + +   R    +     +S  A   +   RV    
Sbjct: 103 ILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLV 162

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              KE      +++ T  + R+                        V ++ G E  G++ 
Sbjct: 163 QTAKELKDRGVWLFGTDMKGRD----YRTWDAHGA-----------VALVIGNEGKGISP 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 + +++ P+     SLN S A  L++++
Sbjct: 208 LLKKSCDEMLTIPMIGHVQSLNASVAASLLIYQ 240


>gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
 gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
          Length = 254

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 21/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   N+G + R    F +  + L        S K   S   ++  +  ++   +L E I 
Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175

Query: 82  ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                    +Y T                      +++   ++  II G E  G++ E +
Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +L++  +  P+     SLN+  A  ++++
Sbjct: 222 SLTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|119476215|ref|ZP_01616566.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2143]
 gi|119450079|gb|EAW31314.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2143]
          Length = 255

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 21/155 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSAN---ADCVIDSV 71
           I L +    +N+GM+ R++   N+  L +  PR      S     +S        ++   
Sbjct: 115 IALDNITNPQNVGMIIRSVCAGNIDGLII--PRKGCAALSPLVIKASVGTVFKAPLLH-- 170

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L + +           R+R+    +      A        + Q+V  I G E  G
Sbjct: 171 --CETLAQGLG--------ALRDRDVT--ICTLSSHAKQSLFEYQAQQSVVYILGNETEG 218

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ E   LS+  +S P+N    SLN++    L+ +
Sbjct: 219 VSEEVQKLSDQQLSIPMNNGVESLNVAVTAALIAF 253


>gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 271

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + L+       S +   ++  +   +   R  + 
Sbjct: 120 VALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPLAR--AT 177

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +E IA      +  + AT      +++++   K             + V ++ G E+ G
Sbjct: 178 PEEFIAWRKSAGVS-VVATHLAGAVDYRTIDYRK-------------KPVVLLMGNEQSG 223

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  +    ++A+   P      SLN++ A  +M++E   + +  +E
Sbjct: 224 LPEQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHLLSLAE 269


>gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
 gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
          Length = 285

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 5/147 (3%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L L    D    +  R+S+  A  +         L   + 
Sbjct: 125 QDPGNLGTLMRTALAAGVEALWLAEGADPLQPKALRASAGAALALPLQRGSRETL---LH 181

Query: 83  DLHFIYATTARNRNNFKSVLA--PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            L  + A TA   +    V+A  P +A  +   ++   +   ++ G+E  GL+ + +  +
Sbjct: 182 QLGELAARTAETGSEALQVVATVPPQAGAIPYWQLDWQRPTVLLLGQEGAGLSGQLLQRA 241

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWE 167
              ++ P +    SLN++ A   ++ E
Sbjct: 242 THRVTIPHSAAVESLNVAVAAAPLLLE 268


>gi|159903887|ref|YP_001551231.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889063|gb|ABX09277.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 285

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 25/197 (12%)

Query: 3   PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
              P+L++S   P  ILV    Q   N+G + R     ++  L L        S+K   S
Sbjct: 101 SALPKLKHS---PDFILVLDRLQDPGNVGTLFRTALAADIDALWL-ALGADPLSQKVLRS 156

Query: 61  SANADCVIDSVRVFSNLKEAIADLH-----------FIYATTARNRNNFKSVLAPKEAAI 109
           SA A   +   R+  +   AI  L             + AT    + +   V+   E   
Sbjct: 157 SAGAVLKLPFERLADSEDIAIDGLVDKLRGVSQEGYQVVATYVAGKPSDFEVIPYWE--- 213

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                +   +   ++ G E  GL+    A     ++ P +    SLN++ A   ++ E  
Sbjct: 214 -----LDWIKPTVLVLGNEGSGLSPRIQACCTHGVTLPHSEAVESLNVAVAAAPLLLERR 268

Query: 170 ENSIVSSEKNVKEQNTP 186
              + S      E++  
Sbjct: 269 RAKMTSYMSKNGERSKL 285


>gi|86133883|ref|ZP_01052465.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820746|gb|EAQ41893.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 171

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 22/161 (13%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-- 71
              I+    +  ENIGM  R   +F + ++      +  PS + R     A   I+ +  
Sbjct: 17  PITIVCDAIRTPENIGMCFRISESFGVEKIYF---HENSPSIENRKVINTARNTINQIEY 73

Query: 72  RVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           + +S   + I +L    + I      +++        K+            + + ++ G 
Sbjct: 74  QTYSEFDQLIQELKQKGNTIIGIEITDKSIDIQDFDFKKY-----------EKIVLLLGS 122

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ER G+ N  I L +  I+ P+     S+N+  ++ + ++E 
Sbjct: 123 ERNGIEN--INLVDETIAIPMYGRNSSMNVIHSLAITLYEI 161


>gi|314968474|gb|EFT12572.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA1]
          Length = 269

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R           L+ PR   P   +A  +S      +   R+      L E + 
Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A  A + ++    +   E +  L +     + V ++ G E  GL+   I+ ++ 
Sbjct: 189 DHGFTVAAMALSGDS----VTLDEFSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 241

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
           ++  P+     SLN++ A  +  +E  
Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELR 268


>gi|288957949|ref|YP_003448290.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
 gi|288910257|dbj|BAI71746.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
          Length = 271

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 16/177 (9%)

Query: 3   PYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARS 59
           P A  L ++      V++L      +N+G + R    F      +++P        KA  
Sbjct: 108 PSAADLLDACGPVARVVMLFGIGNHDNMGGIFRNAAAFG-ADAVILDPGCCDPLYRKAIR 166

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            S  A  ++ + R+    ++ +A L                 L+P  A       +   +
Sbjct: 167 VSVGATLLVPTARL-DAGEDPLALLDRF--------RFEAVALSP--AGAETLAALTPPR 215

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              ++FG E  GL    +A +   +  P+   F SLN++    +++          +
Sbjct: 216 RAALLFGSEGPGLPPALLARA-RSVRIPMAGGFDSLNVATTSGIVLHHVAAGQATPA 271


>gi|169823984|ref|YP_001691595.1| rRNA methylase [Finegoldia magna ATCC 29328]
 gi|167830789|dbj|BAG07705.1| rRNA methylase [Finegoldia magna ATCC 29328]
          Length = 234

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 14/161 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +  N  +   IIL       N+G + R+M  F    L L++      + K   +S  A  
Sbjct: 84  EKSNFQEKNHIILDGIDNMGNLGTIMRSMLAFGYKNLALISNTCDVYNPKVVRASMGAFF 143

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            + +++ F NL++   +            +N        E +  L +  F  +   + FG
Sbjct: 144 KL-NIQKFDNLEDYKKNF----------PDNKIYSFLLDENSNELGDVKFD-EPFSLAFG 191

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            E  GL  E    +   I    +    SLN+  A  + ++E
Sbjct: 192 NEGAGLPKE--YYNENKIFINQSKDVDSLNLPIACSIAMYE 230


>gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 223

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
               N+G + R    FNL+ + +        + K   ++  +   I  V ++      + 
Sbjct: 92  SDAGNMGTIIRTADAFNLSGVIISEDSCDIYNPKTIRATMAS---IFRVPIY-----FLK 143

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +   I       +NNFK +++  E +  + E   SG  + ++ G E  G++ + +  +N 
Sbjct: 144 EDELI-------KNNFKIIVSALEDSKPIKECDLSGDLI-LVIGNEAHGVSQKILERANL 195

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            +  P+     SLN   A  +  +E  +
Sbjct: 196 KVKIPIRDSVDSLNAGVAAGIFAYEMRK 223


>gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           endodontalis ATCC 35406]
          Length = 246

 Score = 52.0 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 65/170 (38%), Gaps = 18/170 (10%)

Query: 6   PQLQNSAKGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           PQ+    + P+I+L++      N G +AR+        L +        S  A ++SA A
Sbjct: 87  PQIFERGEDPLIVLLNGVTDTRNFGAIARSAECAGAHALVIAERGSVSVSADAVNASAGA 146

Query: 65  DCVIDSVRVFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              I   RV  ++  A   +A+                 ++   E A            +
Sbjct: 147 LMRIPVCRV-PSISGAVGYLAECGL-------------QIVVANEKAENTYYTADLTGPL 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ G E  G++ +   L+   ++ P      SLN+S A  ++++E +  
Sbjct: 193 ALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLFESLRQ 242


>gi|77457622|ref|YP_347127.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas fluorescens Pf0-1]
 gi|77381625|gb|ABA73138.1| putative RNA methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 178

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 20/178 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L    +   I L +P+  EN+G V RA   + ++          + + K    + 
Sbjct: 17  PEGTPLVADKRYSCIGLYNPKSPENVGSVMRAAGCYGVS--------TVFYTGKRYERA- 67

Query: 63  NADCVIDSVRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            AD V D+ RV  ++    I DL  I        N     +   + A  L E     + +
Sbjct: 68  -ADFVTDTKRVHYDIPLIGIDDLKKIL-----PLNCVPVAVELVDGARPLPEYTHPDRAL 121

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             IFG E   L  E       ++  P       +N++  V +++++ M   + +    
Sbjct: 122 -YIFGPEDGSLDQEIRDWCEDVVYIPTTGC---MNLAATVNVVLYDRMAKGLNTRSGP 175


>gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
           DSM 12333]
 gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
           DSM 12333]
          Length = 324

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 10/164 (6%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++     VI L       N+G V R+   F      LV  R       A   ++      
Sbjct: 170 RSGTPALVIALDSITDPRNLGAVLRSAGAFGAHG-VLVPARRSAGVTAAAWKTSAGAAAR 228

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             V   +NL  A+ +             +   ++          +   +   V ++ G E
Sbjct: 229 VPVARATNLVRALQEYQAAGCFVVGLDGDGPGMV---------GDLPVADGPVVLVVGSE 279

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GL+       + + + P+     SLN S A  + ++E     
Sbjct: 280 GKGLSRLVRETCDVVAAIPIASSVESLNASVAASIALYEVARRR 323


>gi|298712565|emb|CBJ33268.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 569

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  G  V ++ G E  G+    + L + ++  PV  L  SLN++ A  ++++E +    
Sbjct: 500 ELEEGGVVALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQWS 559

Query: 174 VSS 176
           V+ 
Sbjct: 560 VAG 562


>gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 265

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS-SSANADCVIDSVR 72
           PV++L       N+G + R+   F      +V   R   P     + S++ A   +  VR
Sbjct: 117 PVVVLDQVTDPHNVGAILRSAAAFGAA--CIVTQDRHAPPEGGVLAKSASGALETVPWVR 174

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  NL  A+ +L             +  +    EA   L+  + +G  + ++ G E  G+
Sbjct: 175 VV-NLARALDEL---------ADLGYWRIGLAGEAEATLSGSLTTGA-LALVLGAEGEGM 223

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQ 159
            +      + +   P+     SLN+S 
Sbjct: 224 RHNIAQHCDTLAKLPITSAIESLNVSN 250


>gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
           SK58]
 gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
           SK58]
          Length = 329

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 22/166 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDS 70
              +I L       N+G + RA   F+     +V P  R    +  A  +SA A   +  
Sbjct: 176 PPLLIALDGITDPRNLGAIIRAGSAFD-ADGVIV-PERRSVGVTATAWRTSAGAAARVPV 233

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +   NL   + DLH    F+                     + L     + + + ++ G
Sbjct: 234 AQ-AGNLNTTLVDLHKAGYFVLGLDGGGD-------------VSLPGLALATEPLVLVVG 279

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GL+         I+S P++    SLN S AV + ++E     
Sbjct: 280 AEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQR 325


>gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           Fw109-5]
          Length = 245

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 15/163 (9%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
               V++L   +   N+G + R+        + +   R    +     +SA A       
Sbjct: 94  RPPLVVVLDGVEDPHNLGAIIRSAHALGAHGVVIPKDRAVGVTPAVAKASAGAVERCPVA 153

Query: 72  RV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           RV   S   EA+ +                SV    +    L     +G  + ++ G E 
Sbjct: 154 RVTNVSKTLEALKE------------AGIWSVALAADGDAPLGAVDLTG-PIALVLGSEG 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL        +     P++    SL++S +  + ++E     
Sbjct: 201 EGLRPLVRKTCDHSARIPMSGDLDSLSVSASAAVALYEAARQR 243


>gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 255

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 23/166 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANA---DCVI 68
            G  I+L + Q   N+G + R+   F   +   V+       S+K   ++  +     +I
Sbjct: 103 SGLFILLENIQDPGNLGTIIRSADAFG-AKAVFVSKGSADIYSDKTIRATMGSIFHLPII 161

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           DS+ + + L         ++A + +       +  P                   + G E
Sbjct: 162 DSINIKNTLNLMKNKKISVFAASLKGEKYLNDIKFP--------------NKSAFVIGNE 207

Query: 129 RWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENS 172
             GL +E    ++ ++    P N    SLN + A  ++++E  +N 
Sbjct: 208 ANGLRSETENSADTLVKIYMPGNTE--SLNAATAASIIMYEAAKNR 251


>gi|37912927|gb|AAR05259.1| predicted 23S rRNA methylase [uncultured marine gamma
           proteobacterium EB000-45B06]
 gi|40063153|gb|AAR37990.1| RNA methyltransferase, TrmH family, group 3 [uncultured marine
           bacterium 562]
          Length = 240

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 20/169 (11%)

Query: 9   QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
            + A+ P+I IL +     N+G   R+     +  + +        +  A   S     V
Sbjct: 85  SDEAQNPLILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEV 144

Query: 68  IDSVRVFSNLKEAIA---DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I  +   +NL   +     ++  IY  +              E A   +      +   I
Sbjct: 145 I-KIFHVTNLVNCLKYLQGININIYGLS--------------EHASKSHTDYNFTEASAI 189

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I G E  G+  + +   +  I+   N LF S N+S A  +++ E     
Sbjct: 190 IMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238


>gi|284009258|emb|CBA76372.1| tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
          Length = 331

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 15/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82
             N+G + R+  +F +  + L +      S  A  ++A     I  ++   F+       
Sbjct: 193 PHNLGAIMRSCAHFGVQGIILHD-TAAMESGSAVRTAAGGAEYIKGIQSDNFATTLNKFR 251

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +I  TT+ +++N            +   +    + + ++  +E  GLT       + 
Sbjct: 252 HAGYIIVTTSNHKDN------------IDIAKAVLPEKIVLLLEQESDGLTASLCQKGDM 299

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +S        SLN+S A  +++ +  + 
Sbjct: 300 SLSIGGTGQVKSLNVSVAAGIILAKWWQQ 328


>gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150]
 gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150]
          Length = 250

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 19/175 (10%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L  S+K P +IL+        N+G   R      +  + +   +    +      +  A
Sbjct: 88  ALLESSKHPALILILDGITDPHNLGACLRTADATGVDFVMIPKDKSASITPVVSKVACGA 147

Query: 65  DCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  VRV     ++K       ++Y                   A     +      +
Sbjct: 148 AESVPLVRVTNLVRSIKLLKEHGVWVYGAAG--------------EATGTLYQTDCTSAI 193

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ G E  GL        +++ S P+     SLN+S A  + ++E +     S 
Sbjct: 194 AIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLYEILRQRKGSG 248


>gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 234

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L   AK  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELAGKAKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y                   A +          
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EASINYNEEDYANK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 VILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
           14600]
 gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
           14600]
          Length = 278

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 11/167 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +L    K  ++IL + Q   N+G + R       T + +        S K   S+  + 
Sbjct: 120 EELLGGHKTLLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSL 179

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  + +  +L   +           R R +   + A    A    ++       G + 
Sbjct: 180 YRVPWL-ITEDLSSYLK----------RARESGVCLYAADLQAKCDYDQADCRTACGFLI 228

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL +   AL+ A I  P+     SLN + A  ++++E     
Sbjct: 229 GNEGSGLRDATAALAEARIRIPMGGRLESLNAAMAAGILMYEAARQR 275


>gi|158317422|ref|YP_001509930.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
 gi|158112827|gb|ABW15024.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
          Length = 332

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 102 LAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           L P   A  L       G  V ++ G E  GLT E +A +   +  P+     SLN++  
Sbjct: 261 LTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSLNVAAT 320

Query: 161 VLLMVW 166
             +  +
Sbjct: 321 AAIACY 326


>gi|300024035|ref|YP_003756646.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525856|gb|ADJ24325.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 158

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSN 76
           L  P + +N G + R      +  + ++ P     S++A   S  A   +D V  +   +
Sbjct: 5   LYQPDIAQNTGTILRLCACLGVP-VDVIGPTGFDMSDRALKRS--ALDYLDHVDLKRHIS 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             E +       A + R  +  + +L    A        F   ++ ++ GRE  G     
Sbjct: 62  FSEFMDR----RALSERRADGGRLILLSAHAETPHIHFAFEPNDI-LMLGRESAGCPESV 116

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            A ++A I+ P+ P   SLN++    +++ E +  +      
Sbjct: 117 HAQADARITIPMRPGLRSLNVAVTAAIVLGEALRQTNQFPSP 158


>gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1]
 gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2]
 gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
           naphthophila RKU-10]
 gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila
           RKU-1]
 gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2]
 gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
           naphthophila RKU-10]
          Length = 242

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 41/186 (22%)

Query: 2   TPYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
                ++  +   P+I+L+D  Q   N+G + R                           
Sbjct: 77  YSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRT-----------------------SVG 113

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNR-----NNFKSVLAPKEAAIVLNERI 115
           +     +I   +   ++K     +     T  R R     N  +++   KE  +      
Sbjct: 114 AGANGIIIPKDK---SVKVTETVVKVSVGTVFRARIAVVTNLARTIEELKEKGVWTYASD 170

Query: 116 FSGQNV---------GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             G  +           +FG E  G+        + +++ P+     SLN+S +V ++++
Sbjct: 171 IDGTPIYEEDFTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLF 230

Query: 167 ECMENS 172
           E +   
Sbjct: 231 EAVRQR 236


>gi|311105998|ref|YP_003978851.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
 gi|310760687|gb|ADP16136.1| SpoU rRNA methylase family protein 1 [Achromobacter xylosoxidans
           A8]
          Length = 262

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 15/178 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +TP    L ++     ++    Q   N+G + R      + ++ L        S K   S
Sbjct: 98  VTPPVLDLPDAVDENCVLFDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAAWSPKVLRS 157

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A   +        L   +             R     V    + A  L E +   Q 
Sbjct: 158 GQGAHFALAIHEHVD-LAALL------------PRLQIPLVATALDGARDLYEGVLP-QR 203

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSE 177
              +FG E  G+  E +A +   +  P +     SLN+  A  + ++E    ++  + 
Sbjct: 204 CAWVFGHEGQGVAAELLAAARLKVRIPHDMAAVESLNVGAAAAICLFEQRRQALRGTP 261


>gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440]
 gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica
           CNB-440]
          Length = 373

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 21/180 (11%)

Query: 3   PYAPQLQNSAKGPV---IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           P+      + + P    + L       N+G V R+   F    + +   R    +  A  
Sbjct: 207 PFEDLTAAALEQPAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWR 266

Query: 60  SSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +SA A   +   +V +NL  A+         +    A    +   +              
Sbjct: 267 TSAGAAARVPVAQV-TNLTRALKACKDAGFVVVGLDADGETDLYHL-------------E 312

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +   + ++ G E  GL+       +  +  P+     SLN S A  + + E        
Sbjct: 313 AAVGPLVVVVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASVAAAVTLAEVARRRAAG 372


>gi|1903046|emb|CAB07516.1| hypothetical 13.6 kd protein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 114

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 118 GQNVGIIFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++   +FGRE  GL  + I    +  +  P+     SLN+S    ++V+E +   
Sbjct: 53  DEDYFFVFGRETSGLPKDLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQQ 108


>gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
 gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           Ex25]
 gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
 gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           Ex25]
          Length = 248

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 23/165 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71
           +L       N+G   R         + +   R    +      +  A  V+      +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R    L+E    + +   T                 A     +      + I+ G E  G
Sbjct: 160 RTMRTLQE--KGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        + +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAQ 247


>gi|300361264|ref|ZP_07057441.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353883|gb|EFJ69754.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 185

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 18/171 (10%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V  R
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +L   +         T    +    +           +     ++   +FG+E  GL
Sbjct: 60  MHDDLDTFLK--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
               +    +  +  P++      N+S +V +++ E +      + +    
Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQGFPNMETSHH 162


>gi|33239873|ref|NP_874815.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237399|gb|AAP99467.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 229

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 12/150 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+  + R      + Q   V  +   P+    S++  +   +  V+   N++ AI 
Sbjct: 30  EKPHNLSAILRTCDAIGILQAHAVFKQSKIPTFN--STAQGSQKWVKLVK-HPNIEVAIK 86

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L             FK                        + G E+WGL+    +L + 
Sbjct: 87  SL---------KGEGFKIYGTNLNEQAKDYRLFDYKGPTAFVLGAEKWGLSQLATSLVDE 137

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I  P+  +  SLN+S A   +++E +   
Sbjct: 138 SIFIPMRGMVQSLNVSVASATLLFEALRQR 167


>gi|86153786|ref|ZP_01071989.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613667|ref|YP_999878.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004845|ref|ZP_02270603.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85842747|gb|EAQ59959.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87250040|gb|EAQ72998.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 227

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +           R+SS  A  +   + + +
Sbjct: 85  IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KINNGKKV-LVLGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|329667696|gb|AEB93644.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 185

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 18/161 (11%)

Query: 17  IILVDPQLGENIGMVARAMW--NFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
           ++L +P +  N G +AR     N  L    L+ P       K    +       D V  R
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLD---LIEPLGFQIDNKKMKRA--GLDYWDKVDIR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +L+  +         T    +    +           +     ++   +FG+E  GL
Sbjct: 60  MHDDLETFLN--------TLGPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGL 111

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               +    +  +  P++      N+S +V +++ E +   
Sbjct: 112 PETFMREYYDRNLRIPMSDNIRCYNLSNSVAMVLLEALRQQ 152


>gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688]
 gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688]
          Length = 260

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+     +  + L        S KA      A  V+  V     L  A+A
Sbjct: 122 QDPGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDLL--ALA 179

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                        N     LA       L  +    Q V  + G E  GL+ +  A ++ 
Sbjct: 180 G------------NFPGETLATVMQGESLYAQNLR-QPVAFLIGNEGAGLSLKLQAAASR 226

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I  P+     SLN + A  + V+E +  ++   
Sbjct: 227 KIHIPMQGQVESLNAAAATSICVFERLRQNLNQG 260


>gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           griseoflavus Tu4000]
 gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           griseoflavus Tu4000]
          Length = 314

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G V R++  F      +V      P  +A   +A A         
Sbjct: 165 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKTSAGAAA 217

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + +  A    +   A  A  +     V    +    L         V I+ G E  GL+
Sbjct: 218 RTPVARA---TNLTRALEAYKKAGITVVGLAADGEAELGSLAALDGPVVIVVGSEGKGLS 274

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  +  +  P+     SLN   A  ++++E     
Sbjct: 275 RLVGETCDHRVRIPMPGGTESLNAGVAAGIVLYEAARRR 313


>gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB5]
 gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB5]
          Length = 273

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 15/158 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68
              G V++L       N+G + R+   F +    +V      P      +  ++ A  ++
Sbjct: 119 PQDGIVLVLDQITDPHNVGAILRSAAAFAVK--AIVTTARHSPEATGVLAKSASGALELV 176

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             + +  NL  A+A+L+        +R      L  + +A +    +   + + ++ G E
Sbjct: 177 P-LVLVGNLSRALAELN--------DRGFLTVGLDSEGSADLAAVELH--EPLALVLGAE 225

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             GL        N +    +     SLN+S A  L ++
Sbjct: 226 GKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263


>gi|294786566|ref|ZP_06751820.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|294485399|gb|EFG33033.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
          Length = 231

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P   +LQ ++  P +    P++  N G   R       + L LV P      +     
Sbjct: 64  LQPQEARLQQTST-PHLCFCSPRIPGNTGSAIRLCAITG-SVLHLVEPLGFNLKDTKLRR 121

Query: 61  SANADCVIDSVRVFSNLKEAIADL--HFIYATTARNRNNFKSV-LAPKEAAIVLNERIFS 117
           +      +  V +  +    I  +    I + TA+    +  V   P +  +   E    
Sbjct: 122 AGLDYHDMTHVVIHPDFDNLIESMPDSRIISFTAQATTLYTEVEYRPTDILLFGPEPGDI 181

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + I+ G   +             + FP+ P   SLN++    + ++E    
Sbjct: 182 PDPMDIMAGPHIY-----------QQVRFPMRPSLRSLNLANCASIALYEAWRQ 224


>gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7]
          Length = 274

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++   + + I+ G E  GL    IA  +  +  P+     SLN++ A  +  WE    
Sbjct: 217 QLVHEEKLAIVLGTEGDGLAANTIADCDYTVKIPMYHGVDSLNVAAASAVAFWEMRRR 274


>gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5]
 gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5]
          Length = 371

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 16/168 (9%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A   ++ L       N+G V R+   F    + +   R    +  A  +SA A   +   
Sbjct: 217 AAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVA 276

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +V +   +LK A  +  F+             V    +    L +   +   + ++ G E
Sbjct: 277 QVTNLTRSLK-ACKEAGFVV------------VGLDADGQTDLYDLEAAVGPLVVVVGSE 323

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GL+       +  +S P+     SLN S A  + + E      V +
Sbjct: 324 GRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTLAEVARRRSVEA 371


>gi|117928367|ref|YP_872918.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
 gi|117648830|gb|ABK52932.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
          Length = 304

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G V R      +    L++PR   P   ++   S  A   I   R F    + +  + 
Sbjct: 162 NLGAVFRCAAALGMDG-VLLSPRCADPLYRRSVRVSMGAVFAIPYAR-FDTWPDELTGVS 219

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                           L P  AA  +   R+ +G+ + ++ G E  GL+ + +  +   +
Sbjct: 220 AA--------QFRLLALTPDPAATDIRTLRVAAGERIALMLGAEGPGLSKQALDRAELRV 271

Query: 145 SFPVNPLFPSLNISQ 159
             P++    SLN++ 
Sbjct: 272 RIPMHAGVDSLNVAA 286


>gi|331698924|ref|YP_004335163.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953613|gb|AEA27310.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 256

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSAN---ADCVIDS 70
           V++L       N+GM+ R+     L  + L  PR G P        +SA    +  V+ S
Sbjct: 111 VLVLDAVTNPANVGMILRSATAAGLDGVLL--PRRGVPAIDPLVIKASAGVAFSAPVLRS 168

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                    A           A  R    +V         L E     + V ++ G E  
Sbjct: 169 AT-------AAQGC-------AVLRAAGFAVHGLAAGGDSLLEAELP-ERVALVLGNESE 213

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL+ +     +  ++ P+     SLN++ A  +  +E +   
Sbjct: 214 GLSADVREELDGTLAIPMFGGVESLNVASAGAVAAYELLRRR 255


>gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
           16922]
 gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
           16922]
          Length = 249

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 36/181 (19%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSA 62
           PQ+    K P ++IL       N G +AR      +  + +  P  G    +  A  +SA
Sbjct: 87  PQIYERGKTPFLLILDRVSDVRNFGAIARTAECVGIDAIII--PYKGSASVNADAVKTSA 144

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---- 118
            A   + ++ +                      N  K+V   +++ IVL           
Sbjct: 145 GA---LYNIPICK------------------ENNLKKTVDYLQQSGIVLAAASEKSDTYL 183

Query: 119 ------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   + II G E  G+++  + +S+ II  P+     SLN+S A   +++E +   
Sbjct: 184 YDVDFTTPLAIIMGSEEDGVSDALLKVSDYIIKLPMAGQTASLNVSVACGAILYEAVRQR 243

Query: 173 I 173
           +
Sbjct: 244 L 244


>gi|307700896|ref|ZP_07637921.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|307613891|gb|EFN93135.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 307

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83
           N+G   R+    N     LV P    P   +A   S           ++ + +     AD
Sbjct: 169 NVGAAVRSAAACN-YDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPD-----AD 222

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L                 +  ++ A  L     S + V ++ G ER GL    +A ++ +
Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLA--GDSTRKVALVAGAERDGLKRSTVAKADYV 280

Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166
           +   +     SLN++ A  +  W
Sbjct: 281 VRIEMAHGVDSLNVAGACAVACW 303


>gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
           periodonticum ATCC 33693]
          Length = 234

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L +  K  V+IL + Q   N G + R+   F +  L L+  R+    +E    +S  A
Sbjct: 80  EELASKNKSVVLILDEIQDPRNFGAIIRSAEVFKV-DLILIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y        N+     P                
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEASINYNEEDYP--------------NK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 IVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228


>gi|227875536|ref|ZP_03993676.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227843872|gb|EEJ54041.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 307

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83
           N+G   R+    N     LV P    P   +A   S           ++ + +     AD
Sbjct: 169 NVGAAVRSAAACN-YDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPD-----AD 222

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L                 +  ++ A  L     S + V ++ G ER GL    +A ++ +
Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLA--GDSTRKVALVAGAERDGLKRSTVAKADYV 280

Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166
           +   +     SLN++ A  +  W
Sbjct: 281 VRIEMAHGVDSLNVAGACAVACW 303


>gi|24374596|ref|NP_718639.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24349210|gb|AAN56083.1|AE015744_4 RNA methyltransferase, TrmH family, putative [Shewanella oneidensis
           MR-1]
          Length = 203

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 42/204 (20%)

Query: 1   MTPYAPQLQNSAKGP------VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
           M+     L ++   P       I LV+P+   N+G + RA   + +           + +
Sbjct: 2   MSSSTTTLVDAVASPQAQQAVYIGLVNPKTPTNVGGIMRASGCYGVD--------AVFYT 53

Query: 55  EKARSSSANA-----DCVIDSVRV-----FSNLKEAI-ADLHFIYATTARNRNNFKSVLA 103
            K    +A            +         ++L +AI A    +              + 
Sbjct: 54  GKRYEYAARGPQQYNADTQSAAERIPLTGVTSLLDAIPAGTQLVC-------------VD 100

Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
               A  L E +   +    +FG E   +  E I  ++A++  P       +N++ +V +
Sbjct: 101 LVLGATPLPEFVHP-ERAFYVFGPEDGTIGQEIIDRADAVVYVPT---VGCMNLAASVNV 156

Query: 164 MVWECMENSIVSSEKNVKEQNTPA 187
           ++++ +  +      N  E +  A
Sbjct: 157 LLYDRLAKTYRKQATNEAEFDGDA 180


>gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
           aurantiaca ATCC 27029]
 gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
           aurantiaca ATCC 27029]
          Length = 371

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 16/168 (9%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A   ++ L       N+G V R+   F    + +   R    +  A  +SA A   +   
Sbjct: 217 AAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVA 276

Query: 72  RVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +V +   +LK A  +  F+             V    +    L +   +   + ++ G E
Sbjct: 277 QVTNLTRSLK-ACKEAGFVV------------VGLDADGQTDLYDLEAAVGPLVVVVGSE 323

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             GL+       +  +S P+     SLN S A  + + E      V +
Sbjct: 324 GRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTLAEVARRRSVEA 371


>gi|259502996|ref|ZP_05745898.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169034|gb|EEW53529.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 288

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 24/168 (14%)

Query: 11  SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            A  P I +L       N+G + R+     +  + + +        ++   +      + 
Sbjct: 129 PAAHPRIAVLERIVNPANVGAIFRSAAALGIDGIIVTSDSADPLYRRSSRVAMGTVFQVP 188

Query: 70  S----VRVFSNLKEAIADLHFI----YATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                   +       A +  +    Y T A   R+N   +  P         ++     
Sbjct: 189 WTYIDAHTWQT-----AGVRLLHRLGYQTAAMALRHNTVRIDDP---------QLAQVDK 234

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + II G E  GL  + IA S+  I  P+     SLN++ A  L  WE 
Sbjct: 235 LAIILGSEGPGLAEQTIAQSDFTIKIPMAAGVDSLNVAAASALAFWEL 282


>gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 253

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +     N+G + R         + L        + K + S   +   I   ++  N
Sbjct: 112 VVLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHI---QIVQN 168

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                     + A ++   N     ++  +          S   + ++ G E  G + + 
Sbjct: 169 --------PILAAISSFKENGIPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDV 220

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           I  ++  I  P+     SLN + A  +M++
Sbjct: 221 IETADKKIYIPIKGKAESLNAAVAAGIMIY 250


>gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
           vanbaalenii PYR-1]
          Length = 314

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 11/168 (6%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A    ++    ++ L +     N+G + R++  F    + +   R    +  A  +SA A
Sbjct: 155 AEAKSDAMPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 214

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                  R  +NL  A+              +    V+          ++I     + ++
Sbjct: 215 AARTPVAR-ATNLTRALKQWA----------DAGLQVVGLDADGDTTVDQIDGAGPIVVV 263

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL+       +A++S P+     SLN S A  +++ E     
Sbjct: 264 VGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQR 311


>gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
           DSM 574]
          Length = 264

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 11  SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             + P++++V   Q   N+G + R+      + + L+       + K   ++  +   + 
Sbjct: 112 PGQPPLVVVVDGVQDPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKTIRATMGSLFHLP 171

Query: 70  SVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            V+   ++  A+A      +  I                P     +    +     V I+
Sbjct: 172 VVK-AEDVDGALAYLASAGVTLIVG-------------DPVLGEPIFKANLKV--PVAIM 215

Query: 125 FGRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G    ++    +  ++ P+     SLN++ A  +M++E +   
Sbjct: 216 VGNEGAG-PRADLDRFKHVKVNIPMPGRAESLNVAMATSIMLYEAVRQR 263


>gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae]
          Length = 313

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 11/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G V++L +     N+G V R++  F    + +   R    +  A  +SA     +   + 
Sbjct: 163 GMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAK- 221

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +N+  A+ +             N   V+          +       V I+ G E  G++
Sbjct: 222 ATNITRAVQEFQ----------QNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGIS 271

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  ++++S P+     SLN S A  +++ E     
Sbjct: 272 RLVRDNCDSLMSIPMAGWVESLNASVAAGVVLSEFARQR 310


>gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri
           NRRL B-30929]
          Length = 266

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 18/154 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           +IL + +   N+G + R      ++ + +   R    +     +SA A   +   RV   
Sbjct: 118 VILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERVPVARVTNL 177

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + +KE      +++ T     +  +                 +  ++ +I G E  G++
Sbjct: 178 SATIKELKQRGMWVFGTDVSGTDYRRW---------------DAKGSIAVIIGNEGKGIS 222

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                  + +++ P+     SLN S A  +++++
Sbjct: 223 PLLKKQVDEMLTIPMVGDIQSLNASVAASILIYQ 256


>gi|320537356|ref|ZP_08037311.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
           phagedenis F0421]
 gi|320145821|gb|EFW37482.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
           phagedenis F0421]
          Length = 254

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 27/149 (18%)

Query: 27  NIGMVARAMWNFNLTQLRLVN--PRDGWPSEKARSSSANADCVIDSVRVFSN-----LKE 79
           N+G + R+   F +  + + +  P+    +  A   +      ++ V ++       L  
Sbjct: 113 NLGAIIRSAAFFGIPAVIITDEDPQAKITT-SAYRVAQGG---MEFVTIYHTRSIQWLLR 168

Query: 80  AIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           A             + RN N+  ++L+P E                II G E  GL+   
Sbjct: 169 ACEGKITRIGADHRSFRNLNSLPTLLSPDE-------------ATMIILGNEETGLSEAS 215

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV 165
               + ++  P +    SLN++QA  L +
Sbjct: 216 KKACDHLVKIPGSGAIESLNVAQAGTLFL 244


>gi|306818845|ref|ZP_07452567.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|304648531|gb|EFM45834.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 307

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 11/143 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83
           N+G   R+    N     LV P    P   +A   S           ++ + +     AD
Sbjct: 169 NVGAAVRSAAACN-YDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPD-----AD 222

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L                 +  ++ A  L     S + V ++ G ER GL    +A ++ +
Sbjct: 223 LFHAAGFELAALALRDDAVDLRDYARKLA--GDSTRKVALVAGAERDGLKRSTVAKADYV 280

Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166
           +   +     SLN++ A  +  W
Sbjct: 281 VRIEMAHGVDSLNVAGACAVACW 303


>gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299]
 gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299]
          Length = 338

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81
           Q   N+G + R         + L+       ++KA  ++      +   R+ +  L+E  
Sbjct: 200 QDPGNLGTLVRTALALGWDAVALLPGTCDPYNDKALRAARGGVFRMPMARLTWEELEEV- 258

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                      R     +    P   A   +      + + ++ G E  GL++  +    
Sbjct: 259 ----------TRRDGLQRFCAEPTADATAADTAATGSKGLCLVLGSEGQGLSDVALRTC- 307

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             ++ P+     SLN++ A  ++++     S
Sbjct: 308 EPVAIPMPGEMESLNVAVAGGILLYLMRRGS 338


>gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
           BAL3]
 gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
           BAL3]
          Length = 294

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 11/154 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +L   A+G +++L      +N+G + R+   F    + + +      +     ++  A 
Sbjct: 137 EELAEPAQGVIVMLDQLTDPQNVGAIFRSALAFGARGIVVQDRHAPALAGALAKAAVGAT 196

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +   RV +NL  A+           R  +     +          E     Q   ++ 
Sbjct: 197 ERLPHARV-TNLSRALE----------RLADLGWRAVGLDGTGEQTLEEALDRQPTVLVM 245

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           G E  G+        + +   P+   F SLN+S 
Sbjct: 246 GSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSN 279


>gi|34112942|gb|AAQ62387.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
           EBAC31A08]
          Length = 240

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 20/169 (11%)

Query: 9   QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
            + A+ P+I IL +     N+G   R+     +  + +        +  A   S     V
Sbjct: 85  SDKAQNPLILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEV 144

Query: 68  IDSVRVFSNLKEAIA---DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I  +   +NL   +     ++  IY  +              E A   +      +   I
Sbjct: 145 I-KIFHVTNLVNCLKYLQGININIYGLS--------------EHASKSHTDYNFTEASAI 189

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I G E  G+  + +   +  I+   N LF S N+S A  +++ E     
Sbjct: 190 IMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASRQR 238


>gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
 gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
          Length = 276

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 33/159 (20%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V+     N G V R           L        + K   SSA +   +  V        
Sbjct: 126 VEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVV-------- 177

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGR 127
                        R+R+    +   + A I +      G+                +FG 
Sbjct: 178 -------------RDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSKPTAWLFGN 224

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E  GL     A ++  +  P++    SLN++ A  + ++
Sbjct: 225 EAHGLDPAIAAQADHRVRIPIHGRAESLNLATAAAICLY 263


>gi|85712745|ref|ZP_01043790.1| rRNA methyltransferase, TrmH family protein [Idiomarina baltica
           OS145]
 gi|85693477|gb|EAQ31430.1| rRNA methyltransferase, TrmH family protein [Idiomarina baltica
           OS145]
          Length = 34

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSRQSS 254
           +  +F R      E+ +LRGI++++DK ++ S 
Sbjct: 1   MRRLFNRARPEENELNILRGILASVDKQTKNSD 33


>gi|320011830|gb|ADW06680.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 274

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 18/137 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            N+G   R      +    L+ PR   P   +A   S  +   +   R+ ++  E +A L
Sbjct: 135 ANLGAAFRNAAALGV-DAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRL-TSWPEDLALL 192

Query: 85  HFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                TTA     +R+     L  +             + + ++FG E  GLT   +A +
Sbjct: 193 RQAGFTTAALCLSDRSITLDELVARRY-----------EKLALVFGTEGDGLTPRALAAA 241

Query: 141 NAIISFPVNPLFPSLNI 157
           +A +  P++    SLN+
Sbjct: 242 DAHVRIPMDAGVDSLNV 258


>gi|308189702|ref|YP_003922633.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|319776886|ref|YP_004136537.1| rRNA methylase [Mycoplasma fermentans M64]
 gi|307624444|gb|ADN68749.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|318037961|gb|ADV34160.1| rRNA methylase [Mycoplasma fermentans M64]
          Length = 237

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 22/163 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + ++  K  VI+L + Q   N+G + R    F       V     + ++K   ++  A  
Sbjct: 87  KPKSQIKNKVILLDNVQDPGNVGTIIRNAACFGFDT---VISNVNFYNDKVVRATQGALF 143

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +  ++  +N ++ I  L+    FI AT+              + +I L+E   + + V 
Sbjct: 144 QVSLIKENNN-EDLIKVLNNEGYFIVATSL------------DKDSIKLDELKINKEKVV 190

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           +I G E  G+        +  +  P+   F SLN++ A  +++
Sbjct: 191 LILGNEGNGINKNLYKYCDQKVYIPI--EFESLNVAVASGIIL 231


>gi|238809673|dbj|BAH69463.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 249

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 22/163 (13%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + ++  K  VI+L + Q   N+G + R    F       V     + ++K   ++  A  
Sbjct: 99  KPKSQIKNKVILLDNVQDPGNVGTIIRNAACFGFDT---VISNVNFYNDKVVRATQGALF 155

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +  ++  +N ++ I  L+    FI AT+              + +I L+E   + + V 
Sbjct: 156 QVSLIKENNN-EDLIKVLNNEGYFIVATSL------------DKDSIKLDELKINKEKVV 202

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           +I G E  G+        +  +  P+   F SLN++ A  +++
Sbjct: 203 LILGNEGNGINKNLYKYCDQKVYIPI--EFESLNVAVASGIIL 243


>gi|242281274|ref|YP_002993403.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           salexigens DSM 2638]
 gi|242124168|gb|ACS81864.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           salexigens DSM 2638]
          Length = 251

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 16/169 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             L +S    +++L   Q   N+G++AR+++      +        +    A  +SA A 
Sbjct: 94  ENLADSPLPLLVVLDQVQDPGNVGVLARSLYALGGAGIVTAKHGGAFLGPAAVKASAGAL 153

Query: 66  CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   RV      L +AI     IY   A   ++  S    +     +           
Sbjct: 154 NKLPVARVNNISQALDKAIDMGINIYG--AGLDDDSSSAYTAEIHTPAI----------- 200

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++ G E  G+          +I  P    F SLN++QA  +++ E    
Sbjct: 201 LVLGNEEKGIRFNVEKRCQKLIHIPFRRDFDSLNVAQAGAMLISEFARR 249


>gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
           BAA-613]
          Length = 247

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 32/168 (19%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS------ 70
           I+L   +   N+G + R                       A  + A+   +         
Sbjct: 101 ILLDGIEDPHNLGAIIRT----------------------ANLAGAHGVIIPKRRAVGLT 138

Query: 71  VRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFG 126
             V      A+    +  +   TA   +  K  +     +    L  ++    ++G++ G
Sbjct: 139 ATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGELMYKMNLKGSIGLVVG 198

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            E  G+        + + S P+     SLN S A  ++ +E +   + 
Sbjct: 199 NEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAYEIVRQRLE 246


>gi|296230937|ref|XP_002807779.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase
            TARBP1-like [Callithrix jacchus]
          Length = 1626

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 23/164 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V V      + L++
Sbjct: 1479 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQYLSVSAEQWLPLVEVKPPQLTAYLQQ 1537

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + + I     TAR+ +  +    P              +   ++ G ER G+    I
Sbjct: 1538 KKTEGYTIIGVEQTARSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1582

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               +  +  P   +  SLN+  +  L++WE     ++S      
Sbjct: 1583 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 1626


>gi|161507842|ref|YP_001577806.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
 gi|160348831|gb|ABX27505.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
          Length = 255

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P      + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L + I D                   +  + A            + +I G E  G+++ 
Sbjct: 171 DLADVITDFQ---------DAAIPVYASMLDKAAKQLPDFEKVPQLALIIGNEAHGVSST 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +LS+  +  P+     SLN + A  +M++
Sbjct: 222 IASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|194467106|ref|ZP_03073093.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
 gi|194454142|gb|EDX43039.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
          Length = 290

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS----VRVFSNLKEA 80
             NIG + R+     +  + + +        +A   +      +       + + +  E 
Sbjct: 146 PTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKAWRS--EG 203

Query: 81  IADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           I  LH     TA    R+N   +  P         ++     + II G E  GL  E I 
Sbjct: 204 IDLLHRFGYKTAAMALRHNTVDIDDP---------QLAEADRLAIILGSEGPGLREETIT 254

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            S+  I  P+     SLN++ A  L  WE 
Sbjct: 255 QSDFTIKIPMAAGVDSLNVAAASALAFWEL 284


>gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 325

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 19/171 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +++    ++ L +     N+G V R++  F    + +   R    S  A  +SA A   +
Sbjct: 170 KHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARL 229

Query: 69  DSVR---VFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              R   +   LK+ A   +  +                         +       V I+
Sbjct: 230 PIARATNLTRTLKDWASKGVQVVG---------------LDAEGDTTLDDFDGSGPVVIV 274

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G E  GL+       +AI+S P+     SLN S A  +++ +       S
Sbjct: 275 VGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRSS 325


>gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris
           AB-18-032]
          Length = 373

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 12/153 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G V R+   F    + +   R    +  A  +SA A   +   +V +NL  ++   
Sbjct: 232 PRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQV-TNLTRSLKAC 290

Query: 85  HFIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                     R+    V+         L +   +   + ++ G E  GL+       +  
Sbjct: 291 ----------RDAGFMVVGLDADGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLT 340

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +S P+     SLN S A  + + E      V  
Sbjct: 341 VSIPMVSEVESLNASVAAAVTLAEVARRRAVEG 373


>gi|315226148|ref|ZP_07867936.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|315120280|gb|EFT83412.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 238

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 16/174 (9%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P   +LQ ++  P +    P++  N G   R       + L LV P      +     
Sbjct: 71  LQPQEARLQQTST-PHLCFCSPRIPGNTGSAIRLCAITG-SVLHLVEPLGFNLKDTKLRR 128

Query: 61  SANADCVIDSVRVFSNLKEAIADL--HFIYATTARNRNNFKSV-LAPKEAAIVLNERIFS 117
           +      +  V +  +    I  +    I + TA+    +  V   P +  +   E    
Sbjct: 129 AGLDYHDMTHVVIHPDFDNLIESMPDSRIISFTAQATTLYTEVEYRPTDILLFGPEPGDI 188

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              + I+ G   +             + FP+ P   SLN++    + ++E    
Sbjct: 189 PDPMDIMAGPHIY-----------QQVRFPMRPSLRSLNLANCASIALYEAWRQ 231


>gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 277

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           EN+G + R      +  +   +        +A   S     ++   R      E +  L 
Sbjct: 137 ENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAE-LKML- 194

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                  + +      + P   A  L E       + + ++ G E  GLT   + LS+A 
Sbjct: 195 -------KQKGFRVLAMTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPATLRLSDAR 247

Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167
           +  P++    SLN++ A  L  +E
Sbjct: 248 VRIPMSRGTDSLNVATAAALAFYE 271


>gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
           aerosaccus SK60]
 gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
           aerosaccus SK60]
          Length = 258

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 20/162 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L       N+G   R      ++ + +        +      +  A  ++  ++V +  
Sbjct: 107 VLDQITDPNNLGACLRTAVAMGVSAVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLA 166

Query: 76  -NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L +      F++ T     +  K V                  +V I+ G E  G+  
Sbjct: 167 RTLTDIKKQGVFVFGTA--LDDTAKPVQD-----------CDLTGDVAIVMGSEGDGIRR 213

Query: 135 EEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENS 172
                 + ++  P+    +    SLN+S A  ++++E     
Sbjct: 214 LTADTCDQLVYIPMPGNEHGQIQSLNVSVATGMVLYEASRQR 255


>gi|283955409|ref|ZP_06372908.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793169|gb|EFC31939.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 227

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 64/157 (40%), Gaps = 27/157 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG +AR  +   +  L  +   +    E    +S+ A   +D   V S
Sbjct: 85  IVMLYGISDVGNIGAIARTAYALGVGALIFIG--EKLAMEGVIRTSSGAA--LDLPIVIS 140

Query: 76  NLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           N  +A++ ++       + YA+    +                  +I +G+ V ++ G E
Sbjct: 141 N--DALSVINELKQIGFYFYASDGSGKEIHNV-------------KINNGKKV-LVLGSE 184

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +GL+++     +  +   +   F SLN+S A  ++ 
Sbjct: 185 GFGLSSKIAKKCDECVGITMKNNFDSLNVSAAFAILC 221


>gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 313

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G V R++  F      +V      P  +A   +A A     S   
Sbjct: 164 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKT--SAGT 214

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +    A A  +   A  A  +     V    +    + E       V I+ G E  GL+
Sbjct: 215 AARTPVARA-TNLTRALEAYKKAGIVVVGLAADGEAEIGELDALEGPVVIVVGSEGKGLS 273

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  +  +  P+     SLN   A  ++++E     
Sbjct: 274 RLVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRR 312


>gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 248

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL   +   N+G + R      +  + +   R    +     +S  A   +  VRV    
Sbjct: 104 ILDGIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLV 163

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +KE      +I+ T                      +    G    ++ G E  G++ 
Sbjct: 164 QTVKELKEQGVWIFGT--------------DMKGTDFRKWSAKGA-TALVIGNEGKGISP 208

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 + +++ P+     SLN S A  L++++
Sbjct: 209 LLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ 241


>gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713]
 gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 248

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL   +   N+G + R      +  + +   R    +     +S  A   +  VRV    
Sbjct: 104 ILDGIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLV 163

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +KE      +I+ T                      +    G    ++ G E  G++ 
Sbjct: 164 QTVKELKEQGVWIFGT--------------DMKGTDFRKWSAKGA-TALVIGNEGKGISP 208

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 + +++ P+     SLN S A  L++++
Sbjct: 209 LLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ 241


>gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 428

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 21/164 (12%)

Query: 9   QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++ +  P+I+ L       N G + R+   F+   + +   R    +      +A A   
Sbjct: 276 KSKSSNPIIVALDGVTDPHNFGAIIRSAEAFDCKGIIVPQRRSAGLTGTVAKVAAGALEH 335

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I   RV  NL  AI +L      I   +    +    +   KE A V+           +
Sbjct: 336 IPVSRVV-NLNRAIDELKKKGFIIIGLSG---DGQVPISEFKEKAPVV-----------V 380

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL-MVW 166
           I G E  G++       + ++  P+     SLN S A  + + +
Sbjct: 381 IVGAENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISLCY 424


>gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 314

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 57/167 (34%), Gaps = 16/167 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G  ++L +     N+G V R+   F    + +   R    +  A  +SA     +   +
Sbjct: 160 TGMFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVAK 219

Query: 73  ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +   +KE   + + +    A   +              L+        V I+ G E 
Sbjct: 220 AVNITRTIKEFKDNGYIVVGLDAGGEHT-------------LDTFDGGADPVVIVVGSEG 266

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G++       + ++S P      SLN S A  +++ E       ++
Sbjct: 267 KGISRLVRENCDVLMSIPTESWVESLNASVAAGVVLSEFARQRRAAA 313


>gi|54025800|ref|YP_120042.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54017308|dbj|BAD58678.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 278

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 12/175 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +  +AP         V++   P    N+G + R+  +F    + +          +A  +
Sbjct: 108 LAEFAPGEPGEDAPVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRA 167

Query: 61  SANADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFS 117
           S  +   + +V VF      + +       A     R    +V+   E       +  F 
Sbjct: 168 STGS---LFAVPVFRVPGPAQVLEFRDRQIA-----RGIPTTVVGTDEHGTAAVFDHDFR 219

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              + ++ G E  G++       + +++ P+     SL    A  + ++E     
Sbjct: 220 DATI-LVIGNETSGMSAAWQDACDELVAIPMGGTASSLGAPSAGAVALYEISRQR 273


>gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 253

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 18/175 (10%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +   + P ++L+      +N G + R+        + +        +     +SA A 
Sbjct: 86  EARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAV 145

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   RV +    ++E      +++AT A   +  K V    E    +           
Sbjct: 146 EYMKIARVVNLRRTIEELKEKGIWVFATDA---SGPKPVY---ECDFTI--------PTC 191

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           I+ G E  G++      ++ +I  P      S N S A  ++ +E ++  +   E
Sbjct: 192 IVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246


>gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 253

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 18/175 (10%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +   + P ++L+      +N G + R+        + +        +     +SA A 
Sbjct: 86  EARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAV 145

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   RV +    ++E      +++AT A   +  K V    E    +           
Sbjct: 146 EYMKIARVVNLRRTIEELKEKGIWVFATDA---SGPKPVY---ECDFTI--------PTC 191

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           I+ G E  G++      ++ +I  P      S N S A  ++ +E ++  +   E
Sbjct: 192 IVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246


>gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 313

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 11/160 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G +++L +     N+G V R++  F    + +   R    +  A  +SA     +   +
Sbjct: 162 PGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAK 221

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +N+  A+ +             N   V+          +       V I+ G E  G+
Sbjct: 222 -ATNITRALKEFQ----------QNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGI 270

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       ++I+S P+     SLN S A  +++ E     
Sbjct: 271 SRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQR 310


>gi|300787904|ref|YP_003768195.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
 gi|299797418|gb|ADJ47793.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
          Length = 217

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            A    +R+        +FG E  GL  + +  ++  +  P+     SLN++ A  + V+
Sbjct: 150 YADAELDRVDLAVPTAWVFGNEAHGLPADVLDRADLAVRIPMYGRAESLNLATAAAVCVY 209


>gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium]
          Length = 218

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72
           V+I        N+G + R+     ++ + L        + K   +SA A     +I+ V 
Sbjct: 72  VVIADRISDPGNLGTILRSAEAAGVSAVVLTPGTVEAFNPKVVRASAGAMFHVPIIEDVS 131

Query: 73  VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           V     E I D  F ++ T++            ++   +          + ++ G E  G
Sbjct: 132 V-----EEIRDNGFKVFGTSSH-----------EQQGSIDFTTADLTGKIALLVGNEAHG 175

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L  ++    +A ++ P      SLN++ A  L+ +E       +S
Sbjct: 176 L--DDNVSVDAWLTIPHRGRSESLNVAMACTLVCFEAARQREGNS 218


>gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
 gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
          Length = 245

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G +++L   Q   N+G + R+        + +   R    +     +SA A   I    
Sbjct: 94  NGLLLVLDGVQDPHNLGALIRSAACAGAQGVIIPKDRAVGVTAAVEKASAGAIETIAVAE 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L E  A   +IY                 E+ I + E+  +G  V ++ G E 
Sbjct: 154 VTNIAQTLDELKAAGFWIYGADG-------------ESPISIFEQKLTGA-VALVIGSEG 199

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+        + ++S P+     SLN S A  +M++E +   
Sbjct: 200 EGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLFEVVRQR 242


>gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola
           DSM 14237]
 gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola
           DSM 14237]
          Length = 254

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N G + R      +  + +        +     +SA A   +   +V  ++K+A+     
Sbjct: 118 NFGAIIRTAECTGVDGIIIQKKGAAPVTADTIKTSAGAAFKVPIAKV-DHIKDAVFYLQA 176

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + +  I AT               E        I   +   II G E  G++   + + +
Sbjct: 177 SGIKTIAAT---------------EKTENSVYDISFKEPCAIIMGSEDLGISPSILKVVD 221

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                P+     SLN+S A  + ++E +   
Sbjct: 222 DKAKIPLLGEIGSLNVSVACGVFLYEAVRQR 252


>gi|313773496|gb|EFS39462.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL074PA1]
 gi|313831288|gb|EFS69002.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL007PA1]
 gi|313834898|gb|EFS72612.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL056PA1]
 gi|314974163|gb|EFT18259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA1]
 gi|314976546|gb|EFT20641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL045PA1]
 gi|314984365|gb|EFT28457.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA1]
 gi|315095303|gb|EFT67279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL038PA1]
 gi|327328435|gb|EGE70197.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA2]
 gi|327444221|gb|EGE90875.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA2]
 gi|327444899|gb|EGE91553.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA1]
 gi|328760022|gb|EGF73604.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL099PA1]
          Length = 269

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 13/147 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R           L+ PR   P   +A  +S      +   R+      L E + 
Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A  A + ++    +   E +  L +     + V ++ G E  GL+   I+ ++ 
Sbjct: 189 DHGFTVAAMALSGDS----VTLDEVSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 241

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
           ++  P+     SLN++ A  +  +E  
Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELR 268


>gi|237732567|ref|ZP_04563048.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908106|gb|EEH94024.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 363

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 226 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFR 284

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + +  T++       +   P              + + ++ GRER  L     +  +
Sbjct: 285 QAGYTVVMTSSAKGKPLFTTTLP--------------EKMVLVLGREREALPEAACSADD 330

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             I+        +LN+S A  +++ E    
Sbjct: 331 LCIAIDGTGKVETLNVSVATGVLLAEWWRQ 360


>gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           100-23]
 gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           100-23]
          Length = 249

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R      +  + +   R    +     +S  A   +   RV    
Sbjct: 103 ILDELEDPHNLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              KE      +++ T        K                     V ++ G E  G+++
Sbjct: 163 QTAKELQERGVWLFGT----DMKGKDYRTWDAHGA-----------VALVIGNEGKGISS 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 + +++ P+     SLN S A  L++++
Sbjct: 208 LLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ 240


>gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 234

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L    K  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y        N+     P                
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEASINYNEEDYP--------------NK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V  + G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 VVFVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|188582880|ref|YP_001926325.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
 gi|179346378|gb|ACB81790.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
          Length = 269

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 12/149 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F    + L          KA   SA A   +   R  S    A+ DL  
Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALTVPFARAAS--GAALLDL-- 188

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                A+  +     L P        +R+       ++ G E  GL    +A +  +   
Sbjct: 189 -----AQRHDLTPLALTP--GGHETLDRLAPPSRALLLLGTEGPGLPEALMARARRL-RI 240

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVS 175
            + P F SLN++ A  + +       + S
Sbjct: 241 AMAPGFDSLNVATAGAIALHHLSGARLQS 269


>gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 251

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 24/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70
           I+L + +   N+G + R         + +   R    +     +SA A        V + 
Sbjct: 107 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 166

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +    LKE    L F+ A                +       R+     +G++ G E  
Sbjct: 167 AKTMEELKE--RGLWFVCA----------------DMGGESMYRMNLTGPIGLVIGNEGE 208

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G++       + + S P+     SLN S A  ++ +E +   
Sbjct: 209 GVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQR 250


>gi|315927808|gb|EFV07134.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 163

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +           R+SS  A  +   + + +
Sbjct: 21  IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 77

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 78  DALSLINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 127

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +   +  +   +   F SLN+S A  ++ 
Sbjct: 128 IVKKCDECVGIAMKNNFDSLNVSAAFAILC 157


>gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 252

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL   +   N+G + R      +  + +   R    +      S  A   +   RV    
Sbjct: 107 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLV 166

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + E      +++ T               + A     R  +     +I G E  G++ 
Sbjct: 167 NTVSELKDRGIWVFGT---------------DMAGEDYRRWDAKGATALIIGNEGKGISP 211

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 +++++ P+     SLN S A  L++++   + 
Sbjct: 212 LLKKKVDSMLTIPMTGHVQSLNASVAASLLMYQGFSSR 249


>gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
 gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
          Length = 303

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 46/187 (24%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP---------- 53
            A +L  +A+    +L +     N G + R+     +    L+ P    P          
Sbjct: 139 RAEELCRNARRIA-VLENIADVSNTGAIIRSAAALGI-DAVLITPSCCDPLCRRAIRVSM 196

Query: 54  -----------SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
                       E      ++    ++S+  F     A+ D                   
Sbjct: 197 GTVFLIPWGYIGEDEHWWQSHGPAYLNSLG-FKTAAMALTDNSVSI-------------- 241

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
                    ++ + S + + II G E +GL+ + I   +  +  P+     SLN+  A  
Sbjct: 242 --------DDKTLQSEKRLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAA 293

Query: 163 LMVWECM 169
           +   E  
Sbjct: 294 VAFRELR 300


>gi|302807158|ref|XP_002985292.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii]
 gi|300147120|gb|EFJ13786.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii]
          Length = 248

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  + R+   F    + ++        +  R +    +  +D V V++  K+ I   
Sbjct: 62  AGNIAAIFRSAEAFGFQSVHVITSLTVKGYKGVRRAHRGTERWLD-VEVWNCAKDCIQ-- 118

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   R+R    +V +     + + +         +IFG E  G ++   + ++ + 
Sbjct: 119 ------ALRSRGYRIAVTSTSHDTVSICDM-DWTIPTAVIFGNEHEGASDYSTSQADILC 171

Query: 145 SFPVNPLFPSLNISQAVLLM 164
             P+  +  SLN+S A  ++
Sbjct: 172 GIPMFGMVDSLNVSVAAGIL 191


>gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
 gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
          Length = 376

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           + L       N+G V R+   F    + +   R    +  A  +SA A   +   +V + 
Sbjct: 227 VALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNL 286

Query: 76  --NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +LK A  D  F +    A             +    L +   +   + ++ G E  GL
Sbjct: 287 TRSLK-ACQDAGFMVVGLDA-------------DGDTDLYDLEAAVGPLVVVVGSEGRGL 332

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +       +  +S P+     SLN S A  + + E        +
Sbjct: 333 SRLVGETCDLTVSIPMVSEVESLNASVAAAVTLAEVARRRAAEA 376


>gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 234

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L +  K  V+IL + Q   N G + R+   F +  L L+  R+    +E    +S  A
Sbjct: 80  EELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKV-DLILIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y        N+     P                
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAGEASINYNEEDYP--------------NK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 IVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228


>gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
           10507]
          Length = 290

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+    N+  + L          +A   S      I    +       +  +
Sbjct: 147 PTNVGAIFRSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPWTFLDKQFSWPLQGI 206

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             +     R        +A +E ++ +++ R+     + I+ G E  GL  E IA  +  
Sbjct: 207 AHL-----RELGFQTVAMALREDSLRVDDSRLVDAPRLAIVLGTEGDGLACETIAACDYT 261

Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC 168
           +  P++    SLN++ A  +  W+ 
Sbjct: 262 VCIPMSHGVDSLNVAAASSVAFWQL 286


>gi|170780953|ref|YP_001709285.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155521|emb|CAQ00633.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 218

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 15/151 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R+   F    + +V  R  W    A  +          V   + + + + 
Sbjct: 80  QHDMNIGSIVRSANAFAADTVHIVG-RRRWNKRGAMVT-----DRYQHVVHHATIADLVE 133

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    AR        +   +   VL E     +   ++FG+E  GL++E +A ++ 
Sbjct: 134 --------WARGEGLPIIAIDNVD-GSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADM 184

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++        S+N S A  +++   +   +
Sbjct: 185 TVAISQFGSTRSINASAAAAVVMHAWVMQHV 215


>gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           MM2-3]
 gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           CF48-3A]
 gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           DSM 20016]
 gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           MM2-3]
 gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           CF48-3A]
 gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 249

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R      +  + +   R    +     +S  A   +   RV    
Sbjct: 103 ILDELEDPHNLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              KE      +++ T        K                     V ++ G E  G+++
Sbjct: 163 QTAKELQERGVWLFGT----DMKGKDYRTWDAHGA-----------VALVIGNEGKGISS 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 + +++ P+     SLN S A  L++++
Sbjct: 208 LLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ 240


>gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
           F0399]
 gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
           F0399]
          Length = 265

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 15/159 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + L        +E     SA A   +   R+ +       
Sbjct: 118 EDPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGN------- 170

Query: 83  DLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 A T R    + F  +     A     ++      + ++ G E  G++     L 
Sbjct: 171 -----IAQTIRALKEDGFW-IAGADMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELC 224

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           +  +  P+     SLN S A  ++++E M          
Sbjct: 225 DFTVRLPMRGKINSLNASVAGAILMYEAMRQRTAKDAVP 263


>gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 269

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 44/185 (23%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    L   A     +L +     N+G + R      L                A   + 
Sbjct: 112 PSVESLVKDAHRIA-VLENVTNPTNLGAIVRNAAALGLD---------------AVLFTH 155

Query: 63  NADCVI--DSVRV---------FSNLKEA-----IADLHF-IYATTARNRNNFKSVLAPK 105
            +   +   + RV         ++ L E      I  L F   A   RN  + K +  P+
Sbjct: 156 GSTDPLYRRAARVSMGTVFQIPWTFLPEGSEIDTIKGLGFKTVAMALRN--DTKDISDPE 213

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                    + +   + I  G E  GL  E IA  +  +  P+     SLN++    +  
Sbjct: 214 ---------LKNADKLAIFLGAEGDGLLPETIAACDCCVKIPMAHGVDSLNVAACSAVAF 264

Query: 166 WECME 170
           WE ++
Sbjct: 265 WELVK 269


>gi|317485211|ref|ZP_07944092.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923502|gb|EFV44707.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 286

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCV 67
           ++    +++L   Q   N G +AR ++      L +  PR    +    AR ++A A   
Sbjct: 126 DAPLPLILVLDQVQDPGNAGTLARTLYAMGGAGLVI--PRHNGTFLGAGARRAAAGALER 183

Query: 68  IDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +   +V +    L EA      IY   A            +     L           ++
Sbjct: 184 LPVAKVMNIARALDEARDAGFLIYG--AAFGEGSLDAFTTRLHTPAL-----------LV 230

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            G E  G+  +     + ++  P+   F SLN++QA  ++
Sbjct: 231 LGNEEHGIRPQVAKRCHHLLHIPMLRTFDSLNVAQAGGIL 270


>gi|291280542|ref|YP_003497377.1| RNA methyltransferase TrmH family [Deferribacter desulfuricans
           SSM1]
 gi|290755244|dbj|BAI81621.1| RNA methyltransferase, TrmH family [Deferribacter desulfuricans
           SSM1]
          Length = 223

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 21/159 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANA---DCVIDSVR 72
           +L   Q  +N G + RA   F +     + P+ G  S       +SA +     ++    
Sbjct: 81  VLDKIQDPQNFGAIVRAGHCFGIN--YFIIPKHGSSSVTPAVFKASAGSIIYSKIVKVTN 138

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +   L + + D  F    TA + N  K +             I + +   II G E  G+
Sbjct: 139 IAKTLDKLL-DAGFFI--TAADINGKKEL-----------SEIKTTKRNCIILGSEGEGI 184

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +  +  ++      +     SLN+SQ+  +  +   + 
Sbjct: 185 RSNVLKRAHITFKIEMTGKIDSLNVSQSAAITFYHFFKG 223


>gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
           JGS1721]
 gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
           JGS1721]
          Length = 257

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 13  KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            G +++LVD  Q   N+G + R         + +        ++K   S+  +   I   
Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +       L F+    +  +  +K V++  +      E    G  V I  G E  G
Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +++E   +++  +  P+     SLN++ A  +M++E +  S
Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255


>gi|124025191|ref|YP_001014307.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
 gi|123960259|gb|ABM75042.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
          Length = 229

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                + G E+WG++ E  +L +  I  P+  +  SLN+S A   +++E +    V+
Sbjct: 114 GPTAFVLGAEKWGISEEASSLMDEHIHIPMRGMVESLNVSVAASALLFEAIRQRQVA 170


>gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101]
          Length = 257

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 13  KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            G +++LVD  Q   N+G + R         + +        ++K   S+  +   I   
Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +       L F+    +  +  +K V++  +      E    G  V I  G E  G
Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +++E   +++  +  P+     SLN++ A  +M++E +  S
Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255


>gi|15964143|ref|NP_384496.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307301288|ref|ZP_07581050.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307317959|ref|ZP_07597396.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti
           1021]
 gi|306896361|gb|EFN27110.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306903744|gb|EFN34331.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 288

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   I   R  +N
Sbjct: 137 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPIAR--AN 194

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++ I     A +  + AT      +++++                 + V ++ G E+ G
Sbjct: 195 TEDFIRWQRAAGVQ-VVATHLAGSVDYRTIDY-------------KSKPVVLLMGNEQAG 240

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           L  E    + A+   P      SLN++ A  +M++E   + +
Sbjct: 241 LPVELAREAGALARIPQAGRADSLNLAIATGIMLFEARRHLL 282


>gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str.
           13]
 gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
           str. F4969]
 gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13]
 gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
           str. F4969]
          Length = 257

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 13  KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            G +++LVD  Q   N+G + R         + +        ++K   S+  +   I   
Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +       L F+    +  +  +K V++  +      E    G  V I  G E  G
Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +++E   +++  +  P+     SLN++ A  +M++E +  S
Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255


>gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 243

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 17/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79
           +   N+G + R      +  + +   R    +      S  A   +   +V +    L +
Sbjct: 101 EDPHNLGAILRTCDAIEVDGVIIGKNRSVGLTSTVAKVSTGAIDYVKVAQVTNLSRTLDD 160

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                 ++        N  +   A      ++           I+ G E +G++    + 
Sbjct: 161 LKKRGFWVVGC---ELNESQDYRAIDYNMPLV-----------IVVGSEGFGISKLVKSH 206

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  +  P+     SLN S A  L++++   + 
Sbjct: 207 CDMNVVLPMTGHVTSLNASVATALILYQVYNSR 239


>gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           metschnikovii CIP 69.14]
 gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           metschnikovii CIP 69.14]
          Length = 246

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 11/165 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L    +  +++L       N+G   R      +  + +   R    +      +  A   
Sbjct: 90  LSQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDRSAPMTATVSKVACGAAET 149

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +  VRV           +      A        V    EA   L     +G  + I+ G 
Sbjct: 150 VPLVRVT----------NLARTMRALQEQGVWFVGTAGEATHDLYHSKLTG-PLAIVMGA 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 199 EGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQR 243


>gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
          Length = 265

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
               II G E  G+++E   ++++++  P+     SLN S A  +M++E +   +
Sbjct: 210 GRSAIIVGNEANGISDETANMADSLVKIPMPGKAESLNASVAASIMIYEIVRQKV 264


>gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 245

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 20/165 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           + IL + +   N+G + R         + +   R    +     +SA A       +V +
Sbjct: 97  IFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGALNYTPVAKVTN 156

Query: 76  ---NLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               + E     + F+ A                +        +     +G++ G E  G
Sbjct: 157 LGHTIDELKEQGMWFVCA----------------DMGGETMYNLNLTGPIGVVIGNEGEG 200

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++       + + S P+     SLN S A  ++ +E +   +   
Sbjct: 201 VSRLIREKCDFVASIPMKGDIDSLNASVAAGVLGYEIVRQRLQKK 245


>gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
           erythropolis SK121]
 gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
           erythropolis SK121]
          Length = 323

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 19/171 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +++    ++ L +     N+G V R++  F    + +   R    S  A  +SA A   +
Sbjct: 168 KHAEPPLLVALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARL 227

Query: 69  DSVR---VFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              R   +   LK+ A   +  +                         +       V I+
Sbjct: 228 PIARATNLTRTLKDWASKGVQVVG---------------LDAEGDTTLDDFDGSGPVVIV 272

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G E  GL+       +AI+S P+     SLN S A  +++ +       S
Sbjct: 273 VGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVLADIARRRRSS 323


>gi|218288912|ref|ZP_03493163.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241001|gb|EED08178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 249

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            +   I+FG E+ G++ E    ++     P+     S N+S A  + ++E    +     
Sbjct: 136 ARPTAILFGNEKDGVSPEARERADGRFYIPMAGFVQSFNVSVAAAIALYELTRRA----- 190

Query: 178 KNVKEQNTPATKGELLSFL 196
           +            E     
Sbjct: 191 RETAGDRYALDADERHRLY 209


>gi|300772007|ref|ZP_07081877.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760310|gb|EFK57136.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 177

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 15/168 (8%)

Query: 3   PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P     +  +K PV+ +L + +   N+G   R    F + ++ L       P  +   ++
Sbjct: 12  PDVETFKKQSKIPVVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTA 71

Query: 62  ANAD---CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A        +  + S L++  A+ + I A      +       P            S 
Sbjct: 72  LGATSSVDWEHAPDLVSRLQKLKAEGYQILAIEQAEGSVMLHQFEP-----------SSD 120

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           Q    +FG E  G+  E + +S+  +  P      S NIS  + +++W
Sbjct: 121 QKYAFVFGNEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLW 168


>gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 270

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           EN+G + R      +  +            +A   S     ++   R  +   + +    
Sbjct: 131 ENLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFAR-AATWPDELN--- 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                T R++      + P  AA  L       +G+ V  + G E  GLT   +  S+  
Sbjct: 187 -----TLRDKGFQLLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRR 241

Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167
           +  P++    SLN++ A  L  +E
Sbjct: 242 VRIPMSRGTDSLNVATAAALAFYE 265


>gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           269-3]
 gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           1153]
 gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           269-3]
 gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           1153]
 gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
          Length = 251

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 18/154 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +   R    +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++ + T    ++        +           +     ++ G E  G++   +  
Sbjct: 169 LKKAGYWFFGTAMEGQDY-------RYW--------DTKGKCVLVIGNEGKGISPLLLKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  ++ P+     SLN S A  +++++ + N +
Sbjct: 214 MDQTLTIPMVGHVQSLNASVATGVLLYQMLNNKM 247


>gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 257

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            + P ++L+       N+G + R+      +   ++  R    + +  + +  A   ++ 
Sbjct: 105 RENPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 161

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125
                  NL +AI +L           N    VL     A    E    G+    V ++ 
Sbjct: 162 QPYLRVRNLADAIVELQ----------NMGFLVLGLDGEADQTIEAALDGKRDRPVALVL 211

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  GL  +     + ++       F SLN+S A  + ++
Sbjct: 212 GAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAAIALY 252


>gi|260462582|ref|ZP_05810789.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259031778|gb|EEW33047.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 152

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 17/159 (10%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            I L  P +  N G + R  A     +    ++ P     S+KA   +      ++   +
Sbjct: 6   RIALYQPDIAGNTGTILRFAACLGLGVD---IIEPAGFPLSDKALRRA--GMDYLEMAAL 60

Query: 74  FSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++  +A  D   ++A           +L+ K  A         G    ++FGRE  G+
Sbjct: 61  TRHVDWDAFEDWRKVHA-------KRLVLLSTKATAPYTEFAFARGDI--LLFGRESAGV 111

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +     ++A ++ P+     S+N++ +V ++  E +  
Sbjct: 112 PDPIHQAADARLTIPMQGGARSINVALSVAMVAGEAVRQ 150


>gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 276

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 33/159 (20%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V+     N G V R           L        + K   SSA +   +  V        
Sbjct: 126 VEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVV-------- 177

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGR 127
                        R+R+    +   + A I +      G+                +FG 
Sbjct: 178 -------------RDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSKPTAWLFGN 224

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E  GL     A ++  +  P++    SLN++ A  + ++
Sbjct: 225 EAHGLDPAIAAQADHRVRIPIHGRAESLNLATAAAICLY 263


>gi|218888224|ref|YP_002437545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759178|gb|ACL10077.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 187

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 23/153 (15%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   ++L +     N+  + R+   F + Q+ L      +P    +SS++ A   +D+VR
Sbjct: 13  KDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLYYTDTAFPVLGRKSSAS-ARKWVDTVR 71

Query: 73  VFS------NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                     LKE     H + AT+            P    +   +     Q   II G
Sbjct: 72  HSDAQSLMRTLKE---GGHRVLATS----------CTPAAKPLGDYDMT---QPTAIIMG 115

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            E  G+  E + L +  +  P+  +  S N+S 
Sbjct: 116 NEHSGVAPELVELVDGEVYIPMYGMIQSFNVSV 148


>gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris BisA53]
          Length = 276

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
             +G V++L       N+G + R+   F +  + +        +     S++ A  ++  
Sbjct: 120 PQEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVITARHSPEATGVLAKSASGALELVPL 179

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V V  NL  A+ +L+        +R      L  +         I   Q + ++ G E  
Sbjct: 180 VSV-GNLARALTELN--------DRGFLTIGLDSE--GDDDLASIELTQPLALVLGAEGK 228

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL         A+    +     SLN+S A  L ++
Sbjct: 229 GLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALY 264


>gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
 gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
          Length = 316

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N G + R+      T   +V  R+  P +  A  +SA     I   R   +L   +  
Sbjct: 179 PRNFGAMLRSAVAAG-TDGVIVPTREMAPLNAAAIKASAGTAPRIPIART-DDLPRVLTQ 236

Query: 84  LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           L     F+Y                              + V ++ G E  GL  E    
Sbjct: 237 LKERGYFVYGAEGTAETPLWD--------------ADWDRPVAVVLGSEGQGLAPEVAEA 282

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++S P+     SLN+S A  L+V+E   + 
Sbjct: 283 CDELLSIPMRGPAESLNVSVATGLLVFEAARSR 315


>gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Oceanobacter sp. RED65]
 gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65]
          Length = 249

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 19/157 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74
            + L + Q   N+G + R +  F   +  L +P    P + K   +S  A   I  V + 
Sbjct: 110 TVYLYEVQDPGNLGTILRTLAWFGGFRCVL-SPNSVDPYNPKVVRASMGA---IFHVPIE 165

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N+   I D+         NR +  + L        L+   FS Q    IFG E  G+ +
Sbjct: 166 QNIS--IDDMQ--------NRFDEFACLDI--NGKPLSSEGFSEQR-CFIFGNEARGVPH 212

Query: 135 EEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           EE++       S     +  SLN++ AV +  +E   
Sbjct: 213 EELSKLKTTAYSIQGAGVVESLNLATAVNMCAYELNR 249


>gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
 gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
          Length = 229

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               + G E+WGLT++   L +  +  P+  +  SLN+S A   +++E +    V+    
Sbjct: 115 PTAFVLGAEKWGLTDQARDLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVAGLAP 174

Query: 180 VKEQNTPATKGELLSF 195
            + +     + + L F
Sbjct: 175 TQGEGLKPEQYQQLLF 190


>gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7]
          Length = 247

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 12/151 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R         + +   R    +     +SA A       +V +NL  A+ 
Sbjct: 107 EDPHNLGAIIRTANLAGAHGVIIPKHRAVGLTATVARTSAGALNFTPVAKV-TNLGAAMD 165

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L          +     V A      V+  +  +G  +G++ G E  G++       + 
Sbjct: 166 EL---------KKEGLWFVCA-DMKGEVMYRQNLTG-PIGLVIGNEGEGVSRLVREKCDF 214

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             S P+     SLN S A  ++ +E +   +
Sbjct: 215 TASIPMKGDIDSLNASVAAGVLAYEIVRQRM 245


>gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           phytofermentans ISDg]
          Length = 248

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL   +   N+G + R         + +   R    +      SA A       +V   
Sbjct: 101 IILDGIEDPHNLGAMLRTANQAGAHGIIIPKRRAVGLTATVAKVSAGAINYTPVAKVTNL 160

Query: 74  FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + ++E     L F+ A                + +  +  R      +G++ G E  G+
Sbjct: 161 VATMEELKQKGLWFVCA----------------DMSGEVMYRQNLTGPIGLVIGSEGEGV 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       + +   P+     SLN S A+ ++ +E +   
Sbjct: 205 SRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIVRQR 244


>gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797]
 gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797]
          Length = 261

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 38/178 (21%)

Query: 9   QNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           Q     P+  IL   Q   N G + R+                             AD +
Sbjct: 105 QQEITSPLFLILDRIQDPFNFGAIIRSAEIMG------------------------ADGI 140

Query: 68  IDSVR--------VFSNLKEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFS 117
                        V      A+  +  + AT   +  R+  ++ +     A+  +E++  
Sbjct: 141 FSGTHEQCEVTSLVCRTSAGAVNHVPLVQATDLVSLCRDWKQNGINIVGTAMQASEKLND 200

Query: 118 ---GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               Q   +I G E  G++ E  A    ++  P      SLN++ +  ++++E     
Sbjct: 201 YNFQQPTAVIVGNEGTGISPELQAECTHLVRIPQQGKTESLNVAVSASILLYEASRQR 258


>gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 268

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           EN+  + R      +  +   +        +A   S     ++   R      E +A   
Sbjct: 128 ENLSSIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVA--- 184

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                  + R      L PK  A  L E       Q V ++ G E  GLT   + +S+  
Sbjct: 185 ------LKERGFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLR 238

Query: 144 ISFPVNPLFPSLNISQAVLLMVWE 167
           +  P++    SLN++ A  L  +E
Sbjct: 239 VRIPMSRGTDSLNVATAAALAFYE 262


>gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855]
 gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM
           13855]
          Length = 253

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 21/153 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N G + R+      T   +V  R+  P +  A  +SA     I   R   +L   +  
Sbjct: 116 PRNFGAMLRSAVAAG-TDGVIVPTREMAPLNAAAIKASAGTAPRIPIART-DDLPRVLTQ 173

Query: 84  LH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           L     F+Y                              + V ++ G E  GL  E    
Sbjct: 174 LKERGYFVYGAEGTAETPLWD--------------ADWDRPVAVVLGSEGQGLAPEVAEA 219

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++S P+     SLN+S A  L+V+E   + 
Sbjct: 220 CDELLSIPMRGPAESLNVSVATGLLVFEAARSR 252


>gi|320334385|ref|YP_004171096.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
           21211]
 gi|319755674|gb|ADV67431.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
           21211]
          Length = 266

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 13/175 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P         +++LV  +   N+G + R+          LV       +     +S 
Sbjct: 105 PARPAPDLPHDALLLVLVGVEKPGNVGALLRSADGVG-ADAVLVVGGVDLENPNVIRASQ 163

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +       +    L EA A L ++     R +    + + P  A    +  +     V 
Sbjct: 164 GSVF----TQTLFTLPEADA-LPWL-----RAQGFRVAAITPDGAQNYWDADLT--GRVA 211

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +  G E  GL        +  ++ P+     SLN+S A  L+++E +       +
Sbjct: 212 VCLGAEHAGLPAAWREHPDLKLAIPMRGAADSLNVSTAGALVLYEALRQRGPREQ 266


>gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis C231]
          Length = 313

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 11/160 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G +++L +     N+G V R++  F    + +   R    +  A  +SA     +   +
Sbjct: 162 PGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAK 221

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +N+  A+ +             N   V+          +       V I+ G E  G+
Sbjct: 222 -ATNITRALKEFQ----------QNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGI 270

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       ++I+S P+     SLN S A  +++ E     
Sbjct: 271 SRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQR 310


>gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 364

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 27/178 (15%)

Query: 9   QNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNP---RDGWPSEKARSSSANA 64
           ++S + P+ ++L + Q   N+G + R+ +   + +   V     R    S     +S+  
Sbjct: 199 KDSNRPPLWLVLEEIQDPMNLGAILRSAYFLGVDR---VASSVHRSCPLSPVVSKASSG- 254

Query: 65  DCVIDSVRVF--SNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             V++ + V+   +L++     +A    +  +                  I+        
Sbjct: 255 --VMEVMEVYGYESLEDMLRMKVAQGWQVVGSVGTEAEATH-------IPIIRCSDFHLT 305

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENS 172
           +   ++ G E  GL+   ++L  A++S P      P   SLN+S A  +++   +++ 
Sbjct: 306 KPTLLLMGGEGEGLSRGLLSLCQALLSIPAGRNLFPGIESLNVSVAAGIILHSMLQSR 363


>gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
           alkaliphilus AHT 1]
          Length = 245

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 13/173 (7%)

Query: 2   TPYAPQLQNSAKGP--VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           TP+A  L  +   P  +++L   Q   N+G + R  +      + +   R    +  A  
Sbjct: 81  TPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAAGCDGIIIPERRAAQMTPAAVR 140

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           ++A A   +   +V  NL   + +           ++    V         +        
Sbjct: 141 TAAGAAEYLPVAKVV-NLARCLDEC----------KDAGLWVYGADMDGESVYTTGDYQG 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              ++ G E  GL        + ++  P+     SLN S A  L+++E     
Sbjct: 190 GTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMYEVYRQR 242


>gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
           sp. EE-36]
 gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
           sp. EE-36]
          Length = 258

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P ++L+       N+G + R+      +   +V       + +  + +  A   ++ 
Sbjct: 105 AEAPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVVG-MRHHAAPETGALAKTASGALER 161

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125
                  NL +AI +L           +    VL     A +  E    G+    V ++ 
Sbjct: 162 QPYLRVRNLADAIKELQ----------SMGYLVLGLDGEADMTVESALVGKRDRPVALVL 211

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL  +     +A++       F SLN+S A  + ++   ++S
Sbjct: 212 GAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAAIALYASRDHS 258


>gi|331006347|ref|ZP_08329659.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330419852|gb|EGG94206.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 127

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 43  LRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
           L ++ P      +K    +         +R + N  + I            ++   K + 
Sbjct: 2   LHIIKPTGFDLDDKKLRRAGLDYGEWQDMRTYENWDDFI------------SQTAPKRLF 49

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQA 160
           A           I    +  ++FG E  GL +  +   L    +  P+     S+N+S +
Sbjct: 50  AISTKGARHYHDIEFANDDYVVFGPETRGLPDNVLYHTLMTEQVRIPMTENSRSMNLSNS 109

Query: 161 VLLMVWECMENS 172
           V ++V+E     
Sbjct: 110 VAVIVYESWRQQ 121


>gi|238854900|ref|ZP_04645230.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii
           269-3]
 gi|260664187|ref|ZP_05865040.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282931612|ref|ZP_06337105.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|313472397|ref|ZP_07812889.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|238832690|gb|EEQ24997.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii
           269-3]
 gi|239529739|gb|EEQ68740.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|260562073|gb|EEX28042.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281304223|gb|EFA96332.1| rRNA methylase [Lactobacillus jensenii 208-1]
          Length = 185

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 17/191 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P +  N G +AR          L L+ P       K    +       D V +  
Sbjct: 5   IVLFEPLMPANTGNIARTCA--GTETVLDLIEPLGFQLDNKKMKRA--GLDYWDKVEIHK 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +LK  +         T    +    +      +    +     +N   +FG+E  GL 
Sbjct: 61  HDDLKAFLE--------TLGPNDEMYLISKFSSKSYTDVDYTDENKNYYFVFGKETTGLP 112

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
              +    +  +  P++    + N+S +  +++ E +        +          K + 
Sbjct: 113 ETFMREYYDRNLRIPMSNHIRAYNLSNSAAMVIMEALRQQGFPHLEKSHHYENDKLKDDY 172

Query: 193 LSFLDYLEISL 203
               +  E +L
Sbjct: 173 NR-HERYERNL 182


>gi|149919144|ref|ZP_01907628.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
 gi|149820074|gb|EDM79495.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
          Length = 287

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 16/162 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++        N+G + R    F +    +V+ R      +    ++     + +V    
Sbjct: 138 VVVASGLADPRNLGALIRNAAAFGV-DWVVVDGRGADAFARLTIRAS-----VGNVFRVP 191

Query: 76  NL-KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERWG 131
            L  EA+       AT  + R    + +     A  L     +        ++ G E  G
Sbjct: 192 LLVSEALP------ATVEQLRRELPATVVAATPAGELELDALAVDRPARQIVLVGNEGAG 245

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           L  + +A ++  +  PV     S+N++ A  ++++      +
Sbjct: 246 LDEDALARADRRVRIPVVAGADSVNVAAATAILLYALRPRGL 287


>gi|83594701|ref|YP_428453.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170]
 gi|83577615|gb|ABC24166.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC
           11170]
          Length = 203

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 35/172 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
               N+G V R    F                  +   +  A+   +         +A+A
Sbjct: 17  SKPYNVGNVFRTAHAFG----------------ASFVFTVAANYRQEEGAKVDT-SDALA 59

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---------QNVGIIFGRERWGLT 133
            L F      R       ++ PK   +V  E +                 + G ER GL+
Sbjct: 60  SLPF-----YRFGEVD-DMMLPKGCKLVGLEIVPESIDLPSFRHPSCAAYVLGAERHGLS 113

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
              +A  + ++  P+     S+N+  A  +++++ +      + + V+    
Sbjct: 114 PAMLARCDHVVKIPMR---FSINLGMAGAIVLYDRLITVGRFAPRPVRSGGP 162


>gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
 gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
          Length = 536

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 19/164 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAI 81
             N+G + R+        + L   R    +      +A A   +   RV +   +L EA+
Sbjct: 283 PHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSL-EAL 341

Query: 82  ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
               + +                  E   +    +     + I+ G E+ G++       
Sbjct: 342 KQAGYRVIGLA--------------EEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHC 387

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           + ++  P+  + PSLN S A  + ++E      +          
Sbjct: 388 DQLVRVPLRGVTPSLNASVATAMCLYEVARRGWMKGVHGQTPSP 431


>gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 249

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 19/169 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + +  V+IL   Q   N+G   R+     +T + +   +    +   R +SA A   I +
Sbjct: 96  AGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRI-A 154

Query: 71  VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V   +NL   + DL     ++Y                   A      +    NVG++ G
Sbjct: 155 VVAVTNLARCLRDLQKQGVWLYGLAG--------------EAEASLYSVDLRGNVGLVLG 200

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            E  GL        + ++  P+     SLN+S A  + ++E +   + +
Sbjct: 201 GEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRLGA 249


>gi|119505868|ref|ZP_01627933.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2080]
 gi|119458296|gb|EAW39406.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2080]
          Length = 255

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 19/146 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADCVIDSVRV--FSNLKEA 80
            +N+GM+ R+     +    ++ P+ G          +SA    ++    +    +L  A
Sbjct: 118 PQNVGMIIRSAVAGGID--AILYPKKGVATLGPLVIKASAG---IVFKAPIIPCDSLAPA 172

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +  L    A  A    N  + L     A          ++V  + G E  G++++   L+
Sbjct: 173 LEQLQIGGAAIATLEGNSATSLFTYRPA----------KSVVYVLGGESDGVSSQVSNLA 222

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
           +  +  P+     SLN++ A  L+ +
Sbjct: 223 DIKLHIPMGSGVESLNVAVAASLVAY 248


>gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
 gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
          Length = 251

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID---SVR 72
           V+IL   Q   N+G + R    F    + L         +K   S+  ++  ID   +V 
Sbjct: 106 VLILDRVQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVD 165

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +   L E + D   I+AT+ +                 + +      NV +IFG E  G+
Sbjct: 166 LVD-LLEHMKDFS-IFATSLKADKY-------------IEQLDNIVGNVAVIFGNEGSGV 210

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + E +   N ++   +     SLN+S A  +++ 
Sbjct: 211 SEEILDKVNNLLKISMPGKAESLNVSIAAGIVMH 244


>gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 267

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%)

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R     +LA   +   L            + G E WGL  E     + ++  P++    S
Sbjct: 186 RARGVRLLAADGSGSTLLPEADLTGPHAWVMGNEAWGLDAEVRDACDEVVRVPIHGRAES 245

Query: 155 LNISQAVLLMVW 166
           LN++ A +L ++
Sbjct: 246 LNLAMAAMLCLY 257


>gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 324

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +    +FG E  GL+ + +  +N  +  P+     S N++ A  + ++E      +S  
Sbjct: 262 RPSAWLFGNEAHGLSTDVVDFANVRVRIPIRGSAESFNVAGAAAITLYEASRALSLSHG 320


>gi|227545546|ref|ZP_03975595.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
 gi|300908384|ref|ZP_07125847.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227184483|gb|EEI64554.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
 gi|300893791|gb|EFK87149.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 290

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS----VRVFSNLKEA 80
             NIG + R+     +  + + +        +A   +      +       +V+ +  E 
Sbjct: 146 PTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQS--EG 203

Query: 81  IADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +  LH     TA    R+N   +  P         ++     + II G E  GL    I 
Sbjct: 204 VDLLHRAGYKTAAMALRHNTVDIDDP---------QLAKVDRLAIILGSEGPGLRENTIT 254

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            S+  I  P+     SLN++ A  L  WE 
Sbjct: 255 QSDFTIKIPMATGVDSLNVAAASALAFWEL 284


>gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773]
          Length = 253

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 18/158 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL   +   N+G + R      +  + +   R    +      S  A   +   RV    
Sbjct: 108 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEYVPVARVTNLV 167

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + E      +I+ T               + A     R  +     ++ G E  G++ 
Sbjct: 168 NTVNELKDRGVWIFGT---------------DMAGEDYRRWDAKGATALVIGNEGKGISP 212

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + +++ P+     SLN S A  L++++   + 
Sbjct: 213 LLKKKVDGMLTIPMVGHVQSLNASVAASLLIYQGFSSR 250


>gi|312130425|ref|YP_003997765.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
           17132]
 gi|311906971|gb|ADQ17412.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
           17132]
          Length = 171

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 10/148 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F + +L L       P  +   ++  A   +D        ++A+A    
Sbjct: 32  NVGSIFRTSDGFRVGKLYLCGITATPPHREIEKTALGATASVDW----EYKEDALA---L 84

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
           + A   +        L   + +  L   R    Q   +I G E +G+  E IA ++ +I 
Sbjct: 85  VRAL--KQAGYKILALEQADNSTYLQNFRPIKDQKYALILGNEVFGVNEELIAEADEVIE 142

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSI 173
            P      S N+S +  + +W+    SI
Sbjct: 143 IPQFGTKHSFNVSVSAGMFLWDYFAKSI 170


>gi|332188848|ref|ZP_08390556.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
 gi|332011114|gb|EGI53211.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
          Length = 151

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L +P +  N+G + R    F +  + L+ P     S++A + S  A   +D   V  +  
Sbjct: 5   LYEPDIAGNVGTLIRTAACFGIA-VDLIEPMGFPYSDRALARS--AMDYVDRAEVVRHAD 61

Query: 79  ----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               +A A    + ATT            P +                I+ G E  G+ +
Sbjct: 62  WTAFQAAARGRIVLATTLGALPLPDMRFRPDDV---------------ILLGSEGAGVPS 106

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                ++  +  P+     SLN++    +++ E    +
Sbjct: 107 AVHDAADIRVRVPMRAGVRSLNVAITGGILMAEARRQT 144


>gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500]
          Length = 520

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 17/175 (9%)

Query: 3   PYAPQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60
           P   + +   + P+II L +    +N G + R    F L    +V  +   P S  A  S
Sbjct: 351 PDMTEFEADNRYPLIIALDELWDPQNTGAIVRTCHYFGLDG-VIVTDKGSIPVSPFASKS 409

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S+ A   I+   +F  L  A     F+ A+ AR  +   + ++  E+  + N +I   + 
Sbjct: 410 SSGA---IEEFPIFKCLSLA----SFLQASKARGWHIIGTSVSDPESKDITNVKI--DKP 460

Query: 121 VGIIFGRERWGLTNEEIALSNAIISF-----PVNPLFPSLNISQAVLLMVWECME 170
             ++ G E +GL ++ ++  N +I         N    SLN S    +++     
Sbjct: 461 TVLVIGNEGYGLKDKVVSHCNEMIMIKGLQRSSNEKIDSLNASVTTGILIHHLQS 515


>gi|260221272|emb|CBA29671.1| hypothetical protein Csp_A13310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 66

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             V ++ G E  G+        + ++S P+     SLN+S A  L ++E +     +S
Sbjct: 8   GPVALVLGAEGDGMRQLTAKTCDQLVSIPMQGAVESLNVSVASGLCLYEALRQRTAAS 65


>gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 270

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 16/147 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R         L L++      S +A  +S  A     I   R    L    +
Sbjct: 130 PGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMGAVFTQQIAQARWDDFLLWLRS 189

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A + R+   ++                       I+ G E  GL        + 
Sbjct: 190 GDGQLVAASLRDAVPYRG--------------AAYAAPCFILVGNESQGLPENYETACDL 235

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
            ++ P+     SLN + A  ++ +E +
Sbjct: 236 RVTMPMRGRADSLNAAVAGAVLAYEVL 262


>gi|213962822|ref|ZP_03391082.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
 gi|213954479|gb|EEB65801.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
          Length = 242

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 27/160 (16%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71
           +G ++ L + Q   N+G + R    F +  L L N +     + K   ++  +   +   
Sbjct: 96  EGIILALDNVQDPGNLGTLIRLCDWFGIETL-LCNTQTVDCYNPKVVQATMGSLTRV--A 152

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +L   +A                  V         L    F  ++  +I G E  G
Sbjct: 153 VHYVDLAGFLATCSL-------------PVYVMDLEGENLYTTEFP-EDCVLILGNEANG 198

Query: 132 LTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMV 165
           +T E  +L+N  I+ P    F       SLN++ A  +++
Sbjct: 199 ITPEVRSLANKAITIP---RFSKHQQTESLNVAMAGAIVL 235


>gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
 gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
          Length = 269

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               II G E  G+++E   ++++++  P+     SLN S A  +M++E +  
Sbjct: 210 GRSAIIVGNEANGISDETAYMADSLVKIPMPGKAESLNASVAASVMIYEIVRQ 262


>gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 248

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 16/149 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEA 80
           Q   N+G + R      L  + L +      + K   S+  +   I  VR  + + + E 
Sbjct: 113 QDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGSHFHIPVVRRNLHTYVDEL 172

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            A+   +Y T  +N   ++ +                 +   +I G E  G+    +  +
Sbjct: 173 KAEGVKVYGTALQNGAPYRDM--------------SQAEFFALIVGNEGAGVNAALLEKT 218

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +  +  P+     SLN++ A  ++V+   
Sbjct: 219 DLNLYVPLYGQAESLNVAIAAAILVYHLR 247


>gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
           DSM 13479]
 gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
           DSM 13479]
          Length = 250

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 12/151 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R         + +   R    +     +SA A       +V +NL   I 
Sbjct: 111 EDPHNLGAIIRTANLAGAHGVIIPKRRASGLTAVVAKTSAGALNYTPVAKV-TNLAATIE 169

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L                V A  +    L  R+     +G++ G E  G+        + 
Sbjct: 170 EL---------KEKGLWFVCA--DMNGELMYRLNLKGPIGLVIGSEGDGVGRLVREKCDM 218

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           + S P+     SLN S A  ++ +E +   +
Sbjct: 219 VASIPMKGDIDSLNASVAAGVLAYEIVRQRL 249


>gi|172040099|ref|YP_001799813.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum
           DSM 7109]
 gi|171851403|emb|CAQ04379.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum
           DSM 7109]
          Length = 195

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 33/176 (18%)

Query: 2   TPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +      + +A+ P  IL   PQ+  N G   R       T L L  P      EK    
Sbjct: 16  SSLTTSPRPAAEPPFHILFDQPQIPPNTGNAIRMCAGTGAT-LHLAGPLGFNFEEKHVRR 74

Query: 61  SANADCVIDSVRVFSNLKEAIADLH---------------FIYATTARNRNNFKSVLAPK 105
           +      + +V++  + + A A L                 I+A T   +  F  V   +
Sbjct: 75  AGLDYHDLANVQLHEDFEAAAAHLTGLSRQQAAAGAQPQTRIFAFTTHAKTWFTDVDFRR 134

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA--LSNAIISFPVNPLFPSLNISQ 159
                            ++FG E  GL  E +A     A +  P+ P   S+N+S 
Sbjct: 135 --------------GDVLLFGPEPTGLDEETLADPRITAQLRIPMLPARRSMNLSN 176


>gi|116072328|ref|ZP_01469595.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
 gi|116064850|gb|EAU70609.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
          Length = 279

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 22/188 (11%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWN-------FNLTQLRLVNPRDGWP 53
           + P  P+  +      ++L   Q   N+G + R+                  V+P  G  
Sbjct: 104 LLPEPPKTCDFW----LVLDRIQDPGNLGSLLRSALAADVQSVWMGSG----VDPLGG-- 153

Query: 54  SEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN- 112
             KA  +SA A   +   R     ++AI DL               + L P  +  +   
Sbjct: 154 --KALRASAGALLQLPHRRFGPEQQQAIDDLDQALRLLMAQGIQVVATLVPDASGPLRPI 211

Query: 113 --ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
               +   Q   ++ G E  GL     A     ++ P +    SLN++ A + ++ E   
Sbjct: 212 PYWELDWTQPTALVLGTEGAGLHPRLQACCTHAVTLPHSSRVESLNVAAAAVPLLLERRR 271

Query: 171 NSIVSSEK 178
             +V +++
Sbjct: 272 ARMVGTQQ 279


>gi|325972741|ref|YP_004248932.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324027979|gb|ADY14738.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 266

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 16/159 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL   +   N+G + R+  +F + ++ L+         +   +S      ++    + 
Sbjct: 121 ILILDRIRSPYNVGSIFRSADSFGIQKIYLIEGCAAVDHSRTYKTSRGCTKTVE----YE 176

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L E         A   R       + A +     L+   F  + +  + G E  G++  
Sbjct: 177 ILSE--------EAMLTRLETIQLPLFALETGGTELDLFSFPPKGIA-VIGSEELGVSPA 227

Query: 136 EIALSNA---IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +    A    ++        SLN++ A  +M+      
Sbjct: 228 LLGACEASMGRLTIAQAGTKGSLNVAVAAGIMMHGWFSA 266


>gi|294634934|ref|ZP_06713452.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291091643|gb|EFE24204.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 267

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 19/151 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCV--IDSVRVFSNLKEA 80
             N+G + R   +F +    ++ P        A  R++   A+ V  ID+    + L   
Sbjct: 129 PHNLGGIMRTCAHFGIRG--IMAPESAALESGAAVRTAEGGAEHVQAIDAEDFAATLDTF 186

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
               + I  T++                     R      + ++ G E  GL++  +   
Sbjct: 187 RRAGYTIVTTSSHKGTTQLH-------------RATLPAKIVLVVGHEGDGLSDGTLRQG 233

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  IS        SLN+S A  +M+ E    
Sbjct: 234 DLSISIGGTGSVESLNVSVATGIMLAEWWRQ 264


>gi|239996152|ref|ZP_04716676.1| rRNA methyltransferase [Alteromonas macleodii ATCC 27126]
          Length = 260

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I L + Q   N+G + R +       L L +P    P + KA  SS  A   ++      
Sbjct: 122 IYLYEVQDPGNLGTILRTLAWLGDFTLLL-SPNSVDPYNSKAVRSSMGAIFHVNM----- 175

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L  A+  L             F+           +    F G     +FG E  G+  +
Sbjct: 176 ELNVALESL----------GERFERFAFLDMNGSNITSNTF-GDYQCYLFGNEARGVPVD 224

Query: 136 EIALSNAII-SFPVNPLFPSLNISQAVLLMVWECME 170
            ++  NA   +   +    SLN++ AV +  +E   
Sbjct: 225 ALSKLNATAYTIAGSGKIDSLNLASAVNICAYELTR 260


>gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 264

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              V  +++       I+ G E  GL+++  +LS   I  P+     SLN + A  ++++
Sbjct: 196 QGAVWYDKVSYQGKSAILIGNEANGLSDKATSLSTQRIKIPMEGNVESLNAAIAAAVLMY 255

Query: 167 ECMEN 171
           E    
Sbjct: 256 ESYRQ 260


>gi|149372809|ref|ZP_01891830.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
 gi|149354506|gb|EDM43071.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
          Length = 170

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N G + R    F +  +          S + + ++ + + +I    V        +D+
Sbjct: 29  PANQGALFRVCEAFGVNNIIFFGNTIDIKSSRLKRTARSTEKLIPYSCV--------SDI 80

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
               AT  +N      +    ++A +    I +  ++ +I G E+ G++ + +   +++ 
Sbjct: 81  KETIATLKQNNTRLIGLEITSDSAAIQELTIDTQTSIALIIGSEKHGISEDILQYLDSVY 140

Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170
              +     S+N+ Q+  + ++E  +
Sbjct: 141 HITMFGNNSSMNVIQSTGIALYEITK 166


>gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 276

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           L P   A  L + I   +   I+ G E  GLT   +  ++     P+ P   SLN++ A 
Sbjct: 205 LTPNPEAANLQDVIDPTKKTAILVGAEGPGLTEHAMRATDVRARIPMQPGTDSLNVATAA 264

Query: 162 LLMVWECMENS 172
            +  +E + + 
Sbjct: 265 AIGFYEALRHR 275


>gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 275

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   ++   A     +L       N+G + R+     +  + L          +    S 
Sbjct: 111 PSVEEVCADASRVA-VLEGIADSTNMGAIFRSAAALGIDAVLLTPSCCDPLCRRGVRVSM 169

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNV 121
                +   R+ S L +       I     R        +A  + A+ +++ ++ + + +
Sbjct: 170 GTIFQVPWARIGSELSQWPQQGMKIL----RKLGFKTVAMALNDKAVSIDDSQLMAEEKL 225

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            I+ G E  GL    IA  +     P++    SLN++ A  +  W+  
Sbjct: 226 AIVLGSEGNGLAPGTIADCDYTACIPMSHNVDSLNVAAASAVAFWQLR 273


>gi|149926571|ref|ZP_01914832.1| putative RNA methyltransferase [Limnobacter sp. MED105]
 gi|149824934|gb|EDM84148.1| putative RNA methyltransferase [Limnobacter sp. MED105]
          Length = 273

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 15/152 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      + Q+ L +      S+K   +   A   +          +   
Sbjct: 134 QDPGNVGTLLRNCAAAGVQQVALSDHSAWVWSDKVLRAGMGAQFGL----------QLYT 183

Query: 83  DLHFIYATTARNRNNFKSV--LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +L  + A +A        V  L PK   +   +   +G     +FG E  G++   +  +
Sbjct: 184 ELDLLQALSAAKSKIPVRVTSLHPKSVDLFNADLKPAG---VWVFGSEGQGVSQAWLDRA 240

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  I  P +    SLN+  +  + ++E     
Sbjct: 241 SEHIRIPQSKTIESLNVGSSSAVCLFEQFRQR 272


>gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 247

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 15/159 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA--RSSSANADCVIDSVRV 73
           ++IL   Q   N+G   R+     +    ++N +DG  S  A    +SA A   I+ +++
Sbjct: 100 ILILDSIQDPRNLGACLRSANAAGV-DCVIIN-KDGSASISALVHKTSAGA---INQIKI 154

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F      + +L       A  + N   V+    +A  L  +I       II G E +GL 
Sbjct: 155 FQ-----VTNLSRTI--KALQQQNIW-VIGLDSSANTLIYQIDLTTPNAIIMGSEGFGLK 206

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + +   P+     SLN+S A  + ++E     
Sbjct: 207 RLTKQSCDQLAKIPMQGKVESLNVSVATGITLFEINRQR 245


>gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter
           arcticus 273-4]
          Length = 256

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 24/170 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +L       N G   R      +    ++ P+      +      S  A  ++  V V +
Sbjct: 101 VLDQITDAHNFGACLRTAVAMGVD--AVICPKHHAASLTPTVAKVSVGAAEMMPIVSVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L +      F++ T      + K +                   + II G E  G+
Sbjct: 159 LARTLTKIKNAGVFVFGTA--LNADAKPLHTADLTG-----------KIAIIMGSEGEGM 205

Query: 133 TNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENSIVSSEK 178
                   + ++  P++        SLN+S A  + ++E      +++ +
Sbjct: 206 RRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEINRQRTLAAGQ 255


>gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 249

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 13/168 (7%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +   + P ++L+ + +   N+G + R         + +   R    +     +SA A 
Sbjct: 92  AAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHGVIIPKNRAVGLTATVARTSAGAL 151

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                 +V +NL   I +L          +     V A       + +    G  +G++ 
Sbjct: 152 NYTPVAKV-TNLARTIENL---------KKEGIWFVCA-DMGGTQMYDLDLKGA-IGLVI 199

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G++       + I S P+     SLN S A  ++ +E +   +
Sbjct: 200 GNEGDGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAYEIVRQRM 247


>gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           89/1591]
 gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3]
 gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           89/1591]
 gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           ST3]
          Length = 242

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 18/161 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N G + R      +  + +   R    +     +S  A   +   R
Sbjct: 94  NPLILILDGLTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +++ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWVFGT--------------DMNGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G+++      + +I+ P+     SLN S A  ++++E   
Sbjct: 199 KGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239


>gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 323

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 30/172 (17%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A    N     ++ L       N+G + R++  F    + +       P  +A   +A A
Sbjct: 160 AAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVI-------PERRAAGMTAGA 212

Query: 65  DCVIDS------VRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114
                       V   +NL  A+ D       I    A             E    +N+ 
Sbjct: 213 WKTSAGTAARTPVSRVTNLTRALQDYKKAGITIVGLAA-------------EGTHTVNDL 259

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 V I+ G E  GL        + ++  P+     SLN   A  ++++
Sbjct: 260 AELAGPVVIVVGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311


>gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 249

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++L+    Q   N+G   R+     +T + +   +    +   R +SA A 
Sbjct: 91  LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             I  V V +     +A            R+  K  +     A      ++S     NVG
Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++ G E  GL        + ++  P+     SLN+S A  + ++E +   +
Sbjct: 197 LVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRL 247


>gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63]
 gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
 gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
 gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
 gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
          Length = 265

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 66/159 (41%), Gaps = 18/159 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72
           V+IL   Q   N+G + R   +  +  +  +       + K   S+  +     +I++ +
Sbjct: 120 VLILDRIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIFDMNIINASQ 179

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                 + +  L F   ++  N +NF              ++I  G  V ++ G E  G+
Sbjct: 180 --DETVDMLKSLDFNIVSSYLNTDNF-------------YDKIDYGSKVALVIGNEANGI 224

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             E ++ S+ ++  P+     SLN + +  ++++E  ++
Sbjct: 225 NEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKS 263


>gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
 gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
          Length = 266

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + RA     +T + + +      + K   S+  +   +  V    + ++A+ 
Sbjct: 126 QDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFV-YVEDWQQAL- 183

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     R +     + A      V  E      + G + G E  GLT E  A+++ 
Sbjct: 184 ---------GRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADC 234

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  P+     SLN + A  ++++E     
Sbjct: 235 YVRIPMAGQVESLNAAVAASILMFETARQR 264


>gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599]
 gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599]
          Length = 271

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 15/154 (9%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSN 76
           L + Q   N+G + R      +  + L +      + K   ++  A   I   +  +   
Sbjct: 128 LDEIQDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRATMGALFRIPVFTQSLVDT 187

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             E                   + +++  E   V  +         ++ G E  G++ E 
Sbjct: 188 ADE-------------WKAKGGRVLISSLEQNSVSYDEADYAGLTALVIGNEGRGVSKEM 234

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            A ++  +  P+     SLN + A  + V+E   
Sbjct: 235 FAKADQFVHIPLYGGAESLNAAVAAGIFVYEAQR 268


>gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1]
 gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14]
          Length = 242

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 18/161 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL       N G + R      +  + +   R    +     +S  A   +   R
Sbjct: 94  NPLILILDGLTDPHNFGSILRTADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIAR 153

Query: 73  VFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V +    L +      +++ T                     ++   +G  + +I G E 
Sbjct: 154 VTNLSQTLDKLKEAGFWVFGT--------------DMNGTPSHKWNTAG-KLALIIGNEG 198

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            G+++      + +I+ P+     SLN S A  ++++E   
Sbjct: 199 KGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239


>gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus
           profundus DSM 14977]
 gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus
           profundus DSM 14977]
          Length = 237

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 34/183 (18%)

Query: 3   PYAPQLQNSAKG--PVIILV-DPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSE 55
           P AP      +G  P+++L+       N G + R+         +++ R    R    S 
Sbjct: 74  PDAPLRLAHKRGELPLVVLLDGITDPRNYGAILRSAEALGAHGVVSETR----RSAPLSP 129

Query: 56  KARSSSANADCVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
            A  +SA A   +  V+V         LKEA     ++Y                     
Sbjct: 130 VAVKASAGAARHLPVVQVPNLPRYIEELKEA---GVWVYGLAG--------------EGE 172

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           V  E     + +  + G E  GL        + ++  P+    PSLN + A  + V   +
Sbjct: 173 VALEEADYERPLAWVIGSEGSGLRRLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVHWAL 232

Query: 170 ENS 172
              
Sbjct: 233 AAR 235


>gi|317055279|ref|YP_004103746.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315447548|gb|ADU21112.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 269

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E +   + + I+ G E  GL    I   +  I  P+     SLN++ A  +  WE  
Sbjct: 206 EGLKRAEKLAIVLGTEGDGLKASTIEDCDMTIKIPMAHGVDSLNVAAAGAVAFWEMR 262


>gi|300121517|emb|CBK22036.2| unnamed protein product [Blastocystis hominis]
          Length = 215

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 23/170 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M+    + +    G  ++L +     NIG + R+   F + +  +V    G P      S
Sbjct: 1   MSESVSEAKPKPDG-YLVLANISKNHNIGNMVRSACAFGMKE-VIV---IGQPKLMLYGS 55

Query: 61  SANADCVIDSVRVFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
              A  +   +R F  ++EA     + + I              + P+  A  +    F 
Sbjct: 56  HGTAHHI--KIRKFGTMEEAKAWFKENNIIVC---------GVEIVPE--AEDVRTHPFR 102

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVW 166
           G N  I+ G E  G+  +++ + +  +  P  +    SLN++ A  +++ 
Sbjct: 103 G-NTAIMMGNEGSGMNEKQLGMCDHFVYIPQFSQGTASLNVNVAASIVMH 151


>gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 257

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 14/132 (10%)

Query: 59  SSSANADCVI---DSVRVFSNL---KEAIADLHFIYA-----TTARN--RNNFKSVLAPK 105
           + +  A  V+   D     +++     A A +H         TTA    +     V+  +
Sbjct: 122 AYAVGAQGVLIPKDRAVGVTSVVIKAAAGAMVHLPVCRVTNLTTAITHFKEIGLWVIGAE 181

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF-PSLNISQAVLLM 164
             A      +     + ++ G E  GL        + +++ P+      SLN + A  +M
Sbjct: 182 ATASQTLYGVDLTGPLALVIGGEGQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVM 241

Query: 165 VWECMENSIVSS 176
           ++E       + 
Sbjct: 242 MYEIYRQRAAAQ 253


>gi|238912713|ref|ZP_04656550.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 345

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L       S
Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPS 311

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B]
 gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 247

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71
           +L       N+G   R         + +   R    +      +  A  V+      +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R    L+E    + +   T                 A     +      + I+ G E  G
Sbjct: 160 RTMRTLQE--KGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        + +I  P+     SLN+S A  + ++E +   I + 
Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247


>gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130]
 gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130]
          Length = 285

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 14/163 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVF 74
           +L   +   N+G + R      +  + LV         +A  ++     A  ++      
Sbjct: 134 VLDRVRDPGNLGTIIRTADALGVAGVVLVGETTDPFGLEAVRATMGSLFAKPLVR----- 188

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                 ++   ++    +        V      A+      ++ + + ++ G E+ GL +
Sbjct: 189 ------LSRADYLVLAESWKAGGGHIVGTHLAGAVDHRTIDYAAKPLLLLMGNEQQGLDD 242

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E  A  + +    +     SLN++ A  ++ +    +++ +  
Sbjct: 243 EMAASCDHLALIAMGGAADSLNLAVATGIVTFAARSHALKAPA 285


>gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 233

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 12/165 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L N     V++L   Q   N+G V R+     +  + L   R    +      S+    
Sbjct: 76  SLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIILPRDRSAEINSTVIKVSSGGFI 135

Query: 67  VIDSVRVFSNLKEAIADLHFIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            I  +RV           + I AT T    N F    +  +     + +I       ++ 
Sbjct: 136 GIKFIRV-----------NSISATITWLKNNGFWVFSSALDKNSKKHNQINYPYKSVLVV 184

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++   + + +  I         SLN+S A  ++++E +E
Sbjct: 185 GNEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLFEMIE 229


>gi|193211994|ref|YP_001997947.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
 gi|193085471|gb|ACF10747.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
          Length = 256

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 22/169 (13%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSS 60
           P   + + + +  V+ L D Q   N+G + R    F   +  +  P   D W ++  RS+
Sbjct: 91  PEMGEFRPAERSFVVALDDVQDPGNVGTIIRTAAWFG-AEAVICGPGTADPWNAKTVRST 149

Query: 61  SAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           + +  A  +ID      +L   +           R +    +V A               
Sbjct: 150 AGSIFALRIID----VPDLAAELK----------RLQAAGFTVAAAALDGQDYRSFGEWP 195

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164
               ++ G E  G++ + +AL+++ +  P    +P   SLN S +  ++
Sbjct: 196 DRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVSAGIL 244


>gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
           griseus XylebKG-1]
 gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
           griseus XylebKG-1]
          Length = 318

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 30/178 (16%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A    N+    ++ L       N+G + R++  F      +V      P  +A   +A A
Sbjct: 160 AAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSAFG-GHGVVV------PERRAAGMTAGA 212

Query: 65  --DCVIDSVRV----FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114
                  + R      +NL  A+         +    A   +   +V   +E A      
Sbjct: 213 WKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAA---DGEHTVEDLEELA------ 263

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 V I+ G E  GL        +  +   +     SLN   A  ++++E     
Sbjct: 264 ----GPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317


>gi|291402154|ref|XP_002717373.1| PREDICTED: TAR RNA binding protein 1 [Oryctolagus cuniculus]
          Length = 1629

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 23/158 (14%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKEAI 81
            N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++  
Sbjct: 1475 NLGGLCRTCEVFGASVLA-VGNLQCVSDKQFQHLSVSAEQWLPLVEVRPPQLVDYLQQKK 1533

Query: 82   ADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            A+ + I     TA++ +  +    P              +   ++ G ER G+    I  
Sbjct: 1534 AEGYTIIGVEQTAKSLDLTR-YCFP--------------EKSLLLLGNEREGIPANLIQQ 1578

Query: 140  SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +  +  P   +  SLN+  +  L++WE     ++   
Sbjct: 1579 LDVCVEIPQQGVVRSLNVHVSGALLIWEYTRQRLLQRP 1616


>gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           sphaericus C3-41]
 gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO
           [Lysinibacillus sphaericus C3-41]
          Length = 250

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 17/163 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R         + +   R    +     SS  A   +  VRV    
Sbjct: 102 ILDELEDPHNLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLA 161

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             + E      +I  T A+   +++ +               +   + II G E  G+  
Sbjct: 162 QTVDELKERGIWIAGTDAKGSVDYRKM--------------DATLPLAIIIGSEGKGMGR 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                 + +   P+     SLN S A  L+++E       ++E
Sbjct: 208 LLKEKCDFLYHLPMVGHVTSLNASVAAALLMYEVYRKRQEANE 250


>gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 266

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + RA     +T + + +      + K   S+  +   +  V    + ++A+ 
Sbjct: 126 QDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFV-YVEDWQQAL- 183

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     R +     + A      V  E      + G + G E  GLT E  A+++ 
Sbjct: 184 ---------GRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADC 234

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  P+     SLN + A  ++++E     
Sbjct: 235 YVRIPMAGQVESLNAAVAASILMFETARQR 264


>gi|302773363|ref|XP_002970099.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii]
 gi|300162610|gb|EFJ29223.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii]
          Length = 240

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  + R+   F    + ++        +  R +    +  +D V V++  K+ I   
Sbjct: 62  AGNIAAIFRSAEAFGFQSVHVITSLTVKGYKGVRRAHRGTERWLD-VEVWNCAKDCIQ-- 118

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   R+R    +V +     + + E         +IFG E  G ++   + ++ + 
Sbjct: 119 ------ALRSRGYRIAVTSTGHDTVSICEM-DWTIPTAVIFGNEHEGASDYSTSEADILC 171

Query: 145 SFPVNPLFPSLNISQAVLLM 164
             P+  +  SLN+S A  ++
Sbjct: 172 GIPMFGMVDSLNVSVAAGIL 191


>gi|291085009|ref|ZP_06570899.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291071645|gb|EFE09754.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 246

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 109 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFR 167

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + +  T++       +   P              + + ++ GRER  L     +  +
Sbjct: 168 HAGYTVVMTSSVKGKPLFTTTLP--------------EKMVLVLGREREALPEAACSADD 213

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             ++        +LN+S A  +++ E    
Sbjct: 214 LCVAIDGTGNVETLNVSVATGVLLAEWWRQ 243


>gi|255690187|ref|ZP_05413862.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
 gi|260624301|gb|EEX47172.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
          Length = 255

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 26/158 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81
           Q   N+G + R    F +  +          + K   ++      I  VRV +++L + I
Sbjct: 113 QDPGNLGTIIRLADWFGIEDIICSQNTVDVYNPKTVQATMGG---IARVRVHYTSLPDFI 169

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                      R++     V         + E+  S   + I+ G E  G+  E  AL N
Sbjct: 170 -----------RSQGKEIPVFGTFLDGQNMYEQPLSANGL-IVMGNEGNGIGKEVEALIN 217

Query: 142 AIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
             +  P    +P       SLN++ A  ++  E    +
Sbjct: 218 RKLYIP---NYPQGQETSESLNVAIATAVICAEFRRQA 252


>gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
           DSM 20544]
 gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
           DSM 20544]
          Length = 289

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L + +   N+G + R      +  + +   R    +     +SA A   +   R+  N
Sbjct: 140 VLLDELEDPHNLGALLRTADATGVHGILIPKRRSVSLNATVAKTSAGAVEYVPVARI-GN 198

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           + + +  L             F  V                   + ++ G E  G++   
Sbjct: 199 IAQTLKKL---------KEKGFW-VAGADMDGEKAYYEADLTGPLVLVVGSEGKGMSRLT 248

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
               + I+  P+     SLN S A  ++++E M   +    
Sbjct: 249 KEACDFIVRMPMVGRINSLNASVAGSILMYESMRQRLQKKG 289


>gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
 gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
          Length = 287

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 22/179 (12%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   ++   AK   I L +     N+G + R      +  + L          +A   S 
Sbjct: 120 PTIEEVCQGAKRIAI-LEEVVNPTNVGALFRCAAALGMDAVILTGGCSDPLYRRASRVSM 178

Query: 63  NADCVIDSVR------VFSNLKEA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
                I          V+   ++A   + ++ F  A  A  R +   +  P         
Sbjct: 179 GTVFQIPWTMLSKKDGVWP--EQAMKTLKEMGFKTAAMA-LREDSVGIDDP--------- 226

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ S + + I+ G E  GL  + IA  +  +  P+     SLN++ A  +  W+     
Sbjct: 227 QLNSEEKLAIVLGTEGDGLAGDTIADCDYTVMIPMAHGVDSLNVAAAGAVAFWQLGHQR 285


>gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380]
 gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 246

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 10/162 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           KG +++L       N+G +AR+        + L   R    +  A  +SA A   +   R
Sbjct: 95  KGVILVLDGITDPHNLGALARSAEAVGCQGIVLPKDRSCPITAAAEKASAGALAYLPVCR 154

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V +     +A    ++      +  F       +A            NV ++ G E  GL
Sbjct: 155 VTN-----VARSLEVF-----KQAGFWVYGLAGDAGSQSLYDTDLRGNVVLVVGGEGKGL 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +      +A+++ P+     SLN S A  + ++E +    V
Sbjct: 205 RDNVRKHCDALLAIPMRGQVSSLNASVAGGVALFEVLRQQTV 246


>gi|78187117|ref|YP_375160.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
           273]
 gi|78167019|gb|ABB24117.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
           273]
          Length = 219

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 13/198 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+       +++ +     N+  + R+     +  L  V+ +        R  +A     
Sbjct: 14  LRRRQPDLTVVMDNVNKPHNLSALIRSCDAVGIHDLHAVSKQRSI---HTRQHAAAGSSR 70

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              + ++  +KE           +A  R   + + A   AA V    I       +I G 
Sbjct: 71  WTRLHLWHEIKE---PC------SALRREGMQLLAATNVAAAVDFREIDYTLPTAVILGA 121

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC-MENSIVSSEKNVKEQNTP 186
           E  G++ E I  ++  I    + +  SLN+S A  ++++E   + S+    + ++ +   
Sbjct: 122 EWDGVSKEAIGEADRTIMVQTHGMVESLNVSVAAAVILFEAERQRSLNGMYRELRMEEEQ 181

Query: 187 ATKGELLSFLDYLEISLE 204
             +         L   L 
Sbjct: 182 YRRLLFELSYPRLAEQLT 199


>gi|325193446|emb|CCA27771.1| rRNA methyltransferase putative [Albugo laibachii Nc14]
          Length = 220

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 33/139 (23%)

Query: 46  VNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVL 102
           V PR    +++   +SA A  ++ +  + S    L E +A                 S L
Sbjct: 101 VAPR----NDEVSRASAGALEILAAANMLSQTKCLNEFLA---------------LSSAL 141

Query: 103 APKEAAIVLNERI------FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP--- 153
           + +      ++         S     ++ G E+ GL    I     ++  P N       
Sbjct: 142 SWRTVGASCSKHATPITGLSSKCPTILVMGNEQRGLRKNVIKCCEQLVCIPGNSKQEVTN 201

Query: 154 --SLNISQAVLLMVWECME 170
             SLN+S A  ++++E ++
Sbjct: 202 VDSLNVSVASGILLYELLK 220


>gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
 gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
          Length = 241

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 14/142 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
               N+G + R+   F  + + L        +EK   +S  +  V     V  +L+E   
Sbjct: 108 SDPGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGS--VFRENIVELSLEE--- 162

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     R        L+     I + +   S  ++ +  G E  GL+ +   L++ 
Sbjct: 163 ---------IRKLKKNYRFLSSHMEGIDVRKYDSSNDSIILAIGNEANGLSEDIRKLTDD 213

Query: 143 IISFPVNPLFPSLNISQAVLLM 164
            I   +     SLN + A  +M
Sbjct: 214 FIKISMQGKIESLNAAIAASIM 235


>gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 318

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 19/165 (11%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
             G +++L +     N+G V R++  F    + +          + RS+S  A     S 
Sbjct: 164 RPGLIVVLDNITDPRNLGAVIRSVAAFGGHGVVI---------PERRSASVTAVTWRTSA 214

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKS----VLAPKEAAIVLNERIFSGQNVGIIFGR 127
              + L  A A  + +     R+   F+     V+          +       V ++ G 
Sbjct: 215 GTAARLPVARA-TNLV-----RSLKKFQQSGYQVVGLDAGGSHTLDTYDGTDPVVVVVGS 268

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL+       + I+S P+     SLN S A  +++ E     
Sbjct: 269 EGKGLSRLVGETCDDILSIPMTSTVESLNASVAAGVVLSEFARQR 313


>gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella
           byssophila DSM 17132]
 gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella
           byssophila DSM 17132]
          Length = 263

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 33/180 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANA- 64
            ++     V+IL       N G + R+     +    +V P  G    +  A  +S+ A 
Sbjct: 106 FESGESPLVLILDRITDVRNFGAICRSAECSGVH--AVVVPARGSAQINGDAMKTSSGAL 163

Query: 65  --------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                     +I++V+   N     +    I  T               E    L     
Sbjct: 164 NFIPVCRETDLINTVKYLKN-----SGFQIISCT---------------EKGNDLVYDAD 203

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 II G E  G+++  I LS+     P+     SLN+S A  ++++E +   +  +
Sbjct: 204 YSLPTAIIMGSEEDGISDALIDLSDFKAQIPLKGKVESLNVSVAAGVILFEAVRQKMKQA 263


>gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 252

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 18/174 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L+ +   P++ L   Q  +N+  + R      +  L L + R    +    ++SA A   
Sbjct: 92  LRQAEGRPILALDHIQDPQNLATLMRTAEAVGVGGLLLPDRRAAGVTPAVVNASAGAVEH 151

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +  V + +NL  A+ +      ++ A  A           P+   +   +     +   +
Sbjct: 152 L-RVALVANLGRALEECQEAGYWVVALEAG----------PEAQTLFTADLP---EPTVL 197

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + G E  G+    +  ++  ++ P+     SLN + A  + ++E +   + +  
Sbjct: 198 VVGSEGKGMAPTLLRRADVQVALPMQGRVDSLNAAVAGSIALYELLRRRLAAQG 251


>gi|148377353|ref|YP_001256229.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291399|emb|CAL58783.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 177

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 15/160 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-SVRVFS 75
           I+L  P++  N   + R  +     +L ++ P       K  S  A    + D    V  
Sbjct: 4   IVLFKPEIPPNTANIIRTCFAIG-AKLHIIKPISFSLDPKYLSRPAAGRLLSDIEHEVHD 62

Query: 76  NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +      D +  Y T    R   K+        +   +   +   + ++FG+E  G+
Sbjct: 63  SYSDFYNKYKDKNIYYIT----RYGLKTYSD-----VDFKKEYENNDEIWLMFGKESTGI 113

Query: 133 TNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + +    +  +  P+     S+N++  V ++ +E M  
Sbjct: 114 DKQVLKDNIDNCLRIPMISKMRSINLANCVAIVGFEVMRQ 153


>gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
 gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
          Length = 252

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 19/171 (11%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++L+    Q   N+G   R+     +T + +   +    +   R +SA A 
Sbjct: 94  LVEAAEGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 153

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             I  V V +     +A            R+  K  +     A      ++S     NVG
Sbjct: 154 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 199

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++ G E  GL        + ++  P+     SLN+S A  + ++E +   +
Sbjct: 200 LVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRL 250


>gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
 gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
          Length = 247

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71
           +L       N+G   R         + +   R    +      +  A  V+      +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R    L+E    + +   T                 A     +      + I+ G E  G
Sbjct: 160 RTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        + +I  P+     SLN+S A  + ++E +   I + 
Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247


>gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
 gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
          Length = 260

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 14/168 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L    +   IIL   Q   N+G + R+     +    L        S K   +   A+  
Sbjct: 107 LPARIEQDCIILDGVQDAGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRAGMGANFH 166

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++ V     L+            +   R     +LA    A            V  + G 
Sbjct: 167 LNIVEHC-TLE------------SLAPR-LAVPLLATSSHADAAVFDTDLRGPVAWVVGN 212

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           E  G+++  +A     +  P      SLN++ A  + ++E +     +
Sbjct: 213 EGAGVSDGWMAHVTRKVGIPQPGGLESLNVAAATAICLFEAVRQRRAA 260


>gi|330879586|gb|EGH13735.1| hypothetical protein PSYMP_25410 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 166

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +           + + K    +   D + D+ ++  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   E A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIEDLKSIL-----PLGCIPVAVELVEGARALPEYTHPDRAL-YIFGPEDGSLDQ 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           E       ++  P       +N++  V +++++ M   I   S  +  +E+  PA+ 
Sbjct: 112 EIRDWCEDVVYIPTEGC---MNLAATVNVVLYDRMAKGINTRSGPQFGREKTDPASD 165


>gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 271

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 19/154 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L + Q   N+G + R      +  + L        SEKA  SS  +   I  V    +
Sbjct: 130 VFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVTDV-S 188

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + E I   +    F   T+ ++   +               +I        IFG E  G+
Sbjct: 189 IDELIKWKNETNIFFVGTSLQDAEPY--------------TQISLSGCCMFIFGNEGNGI 234

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + + + +S+  I  P+     SLN+S A  ++++
Sbjct: 235 SQKILNISDKKIYIPLKSNVESLNVSIATAVILF 268


>gi|296118312|ref|ZP_06836893.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968870|gb|EFG82114.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 266

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 25/166 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           V++L      ENIG + R     ++  + L          ++   S      +   R   
Sbjct: 112 VVVLEGVGDHENIGSLFRNAAGMDVDAVLLGAGAADPLYRRSVRVSMGHVLRLPFARFDG 171

Query: 74  -FSN-------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            F+        L +A    H +              L P   A+ L E +     V ++ 
Sbjct: 172 GFTTWQRNLDLLADA--GFHLV-------------SLTPDNEAVHLAEALAGHDKVALMV 216

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  GLT   +  ++     P+     S N++ A  +  +E   +
Sbjct: 217 GAEGPGLTEHAMRATHVRARIPMAEGTDSFNVATAAAIAFYERQRS 262


>gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 255

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 20/155 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + +   N+G + R      ++ + +   R    +     +SA A   +   RV +N
Sbjct: 106 VILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARV-TN 164

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L   I +L     +++ T     +  +            + R     +V II G E  G+
Sbjct: 165 LAATIKELKGRGMWVFGTDIEGTDYRR-----------WDAR----GSVAIIIGNEGKGI 209

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +       + +++ P+     SLN S A  +++++
Sbjct: 210 SPLIKKQVDEMLTIPMVGDIQSLNASVAASVLIYQ 244


>gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
           ATCC 11577]
 gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
           ATCC 11577]
          Length = 255

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 20/155 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + +   N+G + R      ++ + +   R    +     +SA A   +   RV +N
Sbjct: 106 VILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARV-TN 164

Query: 77  LKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           L   I +L     +++ T     +  +            + R     +V II G E  G+
Sbjct: 165 LAATIKELKGRGMWVFGTDIEGTDYRR-----------WDAR----GSVAIIIGNEGKGI 209

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           +       + +++ P+     SLN S A  +++++
Sbjct: 210 SPLIKKQVDEMLTIPMVGDIQSLNASVAASVLIYQ 244


>gi|325277915|ref|ZP_08143457.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51]
 gi|324096946|gb|EGB95250.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51]
          Length = 156

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 24/167 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
            I L +P+  EN+G V RA   +       VN     G   E+AR      D V D+ RV
Sbjct: 8   CIGLFNPKSPENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55

Query: 74  FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++    I DL  I              +   + A  L E     + +  IFG E   L
Sbjct: 56  HYDIPLIGIDDLQRII-----PLGCTPVAVELVDGARPLPEYTHPDRAI-YIFGPEDGSL 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           + E        I  P       +N++  V +++++ M   + +    
Sbjct: 110 SEEVRGWCEETIYIPTEGC---MNLAATVNVVLYDRMAKGLNTRSGP 153


>gi|312114061|ref|YP_004011657.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219190|gb|ADP70558.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
          Length = 175

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 19/161 (11%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P + +N G + R  A  N  +    ++ P     S++A   +  A    D VRV
Sbjct: 23  RVALYQPDIPQNTGTILRMAACLNVAVD---IIEPCGFDLSDRALRRA--ALDYYDKVRV 77

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              ++ +  + +++   A+ AR          P    +  NE +       I+ GRE  G
Sbjct: 78  QRHASFELFLNNIN---ASGARLVLMTTKGATPYHDVLYRNEDV-------ILAGRESAG 127

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++    ++  +  P+     SLN++ ++ +++ E +  +
Sbjct: 128 VPDKVHESAHLRVRIPMQQSLRSLNVAVSMAMVLGEALGQT 168


>gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116]
          Length = 247

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71
           +L       N+G   R         + +   R    +      +  A  V+      +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R    L+E    + +   T                 A     +      + I+ G E  G
Sbjct: 160 RTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGDG 202

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        + +I  P+     SLN+S A  + ++E +   I + 
Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247


>gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 255

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 18/154 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-- 74
           +IL + +   N+G + R      ++ + +   R    +     +SA A   +   RV   
Sbjct: 106 VILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNL 165

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + +KE  +   +++ T     +  +                 +  +V II G E  G++
Sbjct: 166 AATIKELKSRGMWVFGTDIEGTDYRRW---------------DAKGSVAIIIGNEGKGIS 210

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                  + +++ P+     SLN S A  +++++
Sbjct: 211 PLLKKQVDEMLTIPMVGDIQSLNASVAASVLIYQ 244


>gi|154245126|ref|YP_001416084.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
 gi|154159211|gb|ABS66427.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
          Length = 268

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 20/146 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F    + +          KA   S  A  V+   RV      A+  L  
Sbjct: 136 NMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFARVADG-AAAVELLKA 194

Query: 87  ----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A +   R     ++ P                V  +FG E  GL  + +     
Sbjct: 195 RGFEVVALSPAGREPLSRLVRP--------------PRVAALFGTEGPGLP-DAVMAMTR 239

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
            ++ P+   F SLN++    +++   
Sbjct: 240 TVAIPMAAGFDSLNVATTSGIVLHHL 265


>gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
 gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
          Length = 345

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 8/157 (5%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G + R+   F    + L+       +EKA  ++  A   +    + S
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLP---IVS 239

Query: 76  NLKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                +  L   Y          ++  +       +  L + +   +++ ++ G E  GL
Sbjct: 240 GTWHDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELADSLL-NESLCLVLGSEGNGL 298

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           + E +     +++ P+   F SLN+S A  + ++   
Sbjct: 299 SAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334


>gi|224538883|ref|ZP_03679422.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519490|gb|EEF88595.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 227

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 19/172 (11%)

Query: 3   PYAPQLQNS---AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           P    ++++   A+  V+I  +VD     NIG + R+     +  + L        + +A
Sbjct: 67  PAPRTVEDTCRDARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRA 123

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
              S  +  ++    +   L +            AR+     ++    ++  + +  + S
Sbjct: 124 VRVSMGSVFLVPWTWLDGTLSDL-----------ARHGFRTAAMALTDDSISIADPVLAS 172

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              + I+ G E  GL  + IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 173 EPRLAIVMGTEGEGLPPDTIAAADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 224


>gi|223992883|ref|XP_002286125.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977440|gb|EED95766.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 180

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 27/165 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VID--SVR 72
           IL       N+G + R+     +T L L+       + KA  S+  A     V++  +  
Sbjct: 26  ILDGLSDPGNVGTLLRSCAASQVTALILLPNSCDVWNPKAVRSAMGASFRVPVLELTNA- 84

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +   A+              +  KS+     +      +   SG    II GRE  G
Sbjct: 85  --DDKDGAL--------------DQKKSLAHFQVDWIRHTKDDSKSGGGSAIILGREGEG 128

Query: 132 LTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L  E  A         +  P+     SLN +    ++++E M   
Sbjct: 129 LRREVRAAIKQGSISTVHIPMADGVESLNAAVCGSVIMFERMRQW 173


>gi|298346938|ref|YP_003719625.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389351|ref|ZP_07371316.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656609|ref|ZP_07909496.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236999|gb|ADI68131.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327469|gb|EFL94702.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492564|gb|EFU82168.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 283

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 13/144 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI---A 82
           N+G   R+          +V P    P   +A   S      +   R+      A+   A
Sbjct: 142 NVGAAVRSAAACG-YDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPALFHEA 200

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                 A   R  +        ++ A+ L       + V +I G ER GL  + IA ++ 
Sbjct: 201 GFELA-ALALREDSQ-----DLRDYAMELG--AAPSRKVALIAGAERDGLKPQTIARADK 252

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
           ++   +     SLN++ A+ +  W
Sbjct: 253 VVRIAMAHGVDSLNVAGAIAIACW 276


>gi|258512124|ref|YP_003185558.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478850|gb|ACV59169.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 256

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +   I+FG E+ G++ E    ++     P+     S N+S A  + ++E    +
Sbjct: 140 ARPTAILFGNEKDGVSPEARERADGRFYIPMAGFVQSFNVSVAAAIALYELTRRA 194


>gi|148272114|ref|YP_001221675.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830044|emb|CAN00973.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 266

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV- 73
           V++L D     N+G + R++         LV PR   P   +A   S      +   R  
Sbjct: 121 VVVLEDVVDPTNVGAIFRSVGAIG-ADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTG 179

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWG 131
            +   + A+AD  F  A  A         L P   A+ + + R      + I+ G E  G
Sbjct: 180 EWPETRAALADAGFHVAALA---------LTPD--AVSIRDFRAEEHARLAIVLGSEGPG 228

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQ 159
           L+ E I+ ++ ++  P+     SLN++ 
Sbjct: 229 LSAEAISSADTVVRIPMAHGIDSLNVAA 256


>gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
 gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
          Length = 315

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 10/168 (5%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A       +  ++ L       N+G + R++  F    + +   R    +  A  SSA  
Sbjct: 155 AAAYDEGGEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 214

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                  RV +NL  A+          A  +     V    +    + E       V I+
Sbjct: 215 AARTPVARV-TNLTRALE---------AYKKAGITVVGLAADGEHTVGELAALDGPVVIV 264

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL+       +  +S P+     SLN   A  ++++E     
Sbjct: 265 IGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 312


>gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 234

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L    K  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y        N+     P                
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAVGEANINYNEEDYP--------------NK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V ++ G E  G+  +     + ++  P+     SLN+S A  +++
Sbjct: 184 VVLVLGNEGSGIRKKVREHCDKLVKIPMYGQINSLNVSVASGILL 228


>gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5]
 gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5]
          Length = 248

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 16/149 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEA 80
           Q   N+G + R      L  + L +      + K   S+  +   I  VR  + S + E 
Sbjct: 113 QDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVRRNLPSYVDEL 172

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            A+   +Y T  +N   +              + I   ++  +I G E  G+    +  +
Sbjct: 173 KAEGVKVYGTALQNGAPY--------------QEIPQSESFALIVGNEGAGVDAALLEKT 218

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +  +  P+     SLN++ A  ++V+   
Sbjct: 219 DLNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|315038839|ref|YP_004032407.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|325957278|ref|YP_004292690.1| rRNA methylase [Lactobacillus acidophilus 30SC]
 gi|312276972|gb|ADQ59612.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|325333843|gb|ADZ07751.1| rRNA methylase [Lactobacillus acidophilus 30SC]
 gi|327184008|gb|AEA32455.1| rRNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 255

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P      + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L + I D            +      +  + +    +       + +I G E  G++  
Sbjct: 171 DLADVITDFQ---------DSAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSET 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +LS+  +  P+     SLN + A  +M++
Sbjct: 222 IASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2053A-b]
 gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2053A-b]
          Length = 253

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +     N+G + R         + L N      + K + S   +   +   ++   
Sbjct: 112 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHL---QIVQT 168

Query: 77  -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +++ + D            N      +  +    +     +   +G+I G E  G++ +
Sbjct: 169 DIEQVLLDF---------KNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQ 219

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                +  I  P+     SLN + A  +M++
Sbjct: 220 VQLECDHKIYIPIKGKAESLNAAVAAGIMIY 250


>gi|309808395|ref|ZP_07702295.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308168363|gb|EFO70481.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 159

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +     N+G + R         + L N      + K + S   +   +   ++   
Sbjct: 18  VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHL---QIVQT 74

Query: 77  -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +++ + D            N      +  +    +     +   +G+I G E  G++ +
Sbjct: 75  DIEQVLLDF---------KNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQ 125

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                +  I  P+     SLN + A  +M++
Sbjct: 126 VQLECDHKIYIPIKGKAESLNAAVAAGIMIY 156


>gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           11V1-d]
 gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           09V1-c]
 gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           3008A-a]
 gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2052A-d]
 gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
 gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
 gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
 gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           11V1-d]
 gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           09V1-c]
 gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2052A-d]
 gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           3008A-a]
 gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
 gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
 gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
          Length = 255

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +     N+G + R         + L N      + K + S   +   +   ++   
Sbjct: 114 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHL---QIVQT 170

Query: 77  -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +++ + D            N      +  +    +     +   +G+I G E  G++ +
Sbjct: 171 DIEQVLLDF---------KNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQ 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                +  I  P+     SLN + A  +M++
Sbjct: 222 VQLECDHKIYIPIKGKAESLNAAVAAGIMIY 252


>gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
           2876]
 gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
           2876]
          Length = 246

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 25/167 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L + Q   N+G + R       T + + +      + K   S+  +   +  +    +
Sbjct: 98  VVLENIQDPGNLGTIIRTAEGAGATGIIMSDKTVDIYNPKTIRSTMGS---LFRMPFVYS 154

Query: 77  LKEAIADLHF-------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            ++ +A +H        ++A     RN +      +E   V          + ++ G E 
Sbjct: 155 -EDVVAAIHSLKQQNIKVFAAHLEGRNYYY-----EEDMKV---------PMAVLIGNEG 199

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            GLT E    ++  I  P+     SLN + +  ++++E M    +  
Sbjct: 200 NGLTEELSKEADVRIKIPMEGKLESLNAAVSTAVILYEAMRQRHIQP 246


>gi|239815595|ref|YP_002944505.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
 gi|239802172|gb|ACS19239.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
          Length = 264

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 23/178 (12%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P+L   A  P ++L   Q   N G + R+   F   Q+  +       + K   +  
Sbjct: 106 PARPELLPDA--PSVVLDRLQDAGNAGSILRSAAAFGFKQVIALKGTAALWAPKVLRAGM 163

Query: 63  NADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A   +  +       +A+ +L   + AT++   +       P                 
Sbjct: 164 GAHFGLRLIEGVE--ADALDELKVPLVATSSHRGDWLHEARLP--------------HPC 207

Query: 122 GIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             + G E  G++    A ++  I    P      SLN++ A  + +      ++V + 
Sbjct: 208 AWLLGHEGQGVSAALEARASHHIRIAQPGGEE--SLNVAAAAAICLHASGAAALVQAA 263


>gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
           JGS1987]
 gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
           JGS1495]
 gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
           JGS1495]
 gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
           JGS1987]
          Length = 257

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 66/161 (40%), Gaps = 13/161 (8%)

Query: 13  KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            G +++LVD  Q   N+G + R+        + +        ++K   S+  +   I   
Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRSAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +       L F+    +  +  +K V++  +      E    G  V I  G E  G
Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +++E   +++  +  P+     SLN++ A  +M++E +  S
Sbjct: 215 VSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255


>gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
 gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
          Length = 263

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L   Q   N+G + R      +T + L        + K   S+  +   I  +  + +
Sbjct: 116 IVLNRLQDPGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGS---IYRMPFYYS 172

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++   D+        R ++    + A         +     +    + G E  GL  E 
Sbjct: 173 -QDLKKDI-------GRLKDKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEEI 224

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              ++  I  P+     SLN + A  ++++E     
Sbjct: 225 AQQADTYIKIPMKGRVESLNAAIASSVLMFEAARQR 260


>gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
 gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
          Length = 268

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + R     ++T + +        + K   S+      +  V    + 
Sbjct: 125 VLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDIYNPKVVRSTMGTIFRVPFV-YVDDP 183

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+           R + +   V         L       +N   + G E  GLT+E  
Sbjct: 184 AKAVD----------RLKEHGIVVYGAHLDGCDLYAGKLK-RNNAFLIGNEGNGLTDELS 232

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++ ++  P+     SLN + +  L+ +E     
Sbjct: 233 SKADRLLRIPMAGQVESLNAAISATLLAYEAYRQR 267


>gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 295

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 18/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL + +   N+G + R      +  + +   R    +     +S  A   I   RV +
Sbjct: 147 ILILDNLEDPHNLGSIMRTADAVGVHGIIIPKHRAVGLTSTVAKTSTGAIEHIPVARVTN 206

Query: 76  NLKE--AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +E   + D    I+ T               + A     +  +   +G+I G E  GL
Sbjct: 207 LTQEIKKLKDRGLWIFGT---------------DMAGTDYRKWDAKGPIGLIIGNEGKGL 251

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       +  ++ P+     SLN S A  +++++   + 
Sbjct: 252 SPIVKKEVDQTLTIPMVGHVQSLNASVAAGVLMYQAYNSR 291


>gi|154246890|ref|YP_001417848.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
 gi|154160975|gb|ABS68191.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
          Length = 154

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 15/160 (9%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--R 72
             I L  P + +N G + R    F + ++ ++ P  G+P   A    A     ID V  R
Sbjct: 3   VRIALYCPDIAQNAGTILRIGACFGI-EVHIIEP-AGFPVGDAGFRRAG-MDYIDQVTWR 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++     A+         R     + VL   + A  L    F   +V ++FGRE  G+
Sbjct: 60  RHASFAAFDAE---------RRAEGRRVVLFTTQGAEPLFGFRFQPDDV-LLFGRESAGV 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                A+++A +  P+     SLN++ +  + + E +  +
Sbjct: 110 PESVHAVADARLRIPMRAGVRSLNVAVSAGIALAEALRQT 149


>gi|254432253|ref|ZP_05045956.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
           7001]
 gi|197626706|gb|EDY39265.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
           7001]
          Length = 229

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 55/173 (31%), Gaps = 24/173 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+  + R+     + +   V  +   P+  + +  +     +       +   A+ 
Sbjct: 30  EKPHNLSAILRSCDAVGVLEAHAVCLKGRLPTFNSTAQGSQKWVPLHR---HPSAAAALQ 86

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGLTNEE 136
                   + R +         +     L+                 + G E+WGL+ E 
Sbjct: 87  --------SLREQGF-------RLYGTHLSAEAVDYRSCDFTGPTAFVLGAEKWGLSPEC 131

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
             L +  I  P++ +  SLN+S A   +++E +     +       +     +
Sbjct: 132 AGLVDQAIVIPMSGMVQSLNVSVATATLLFEALRQRQAAGTVPSAGEGLAPER 184


>gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
           K5]
 gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
           K5]
          Length = 256

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 24/170 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFS 75
           +L       N G   R      +    ++ P+      +      S  A  ++  V V +
Sbjct: 101 VLDQITDAHNFGACLRTAVAMGVD--AVICPKHHAASLTPTVAKVSVGAAEMMPIVSVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L +      F++ T           L      I   +         II G E  G+
Sbjct: 159 LARTLTKIKNAGVFVFGTA----------LNANAKPIHAADLT---GKTAIIMGSEGEGM 205

Query: 133 TNEEIALSNAIISFPVN----PLFPSLNISQAVLLMVWECMENSIVSSEK 178
                   + ++  P++        SLN+S A  + ++E      +++ +
Sbjct: 206 RRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEINRQRTLAAGQ 255


>gi|301016090|pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
 gi|301016091|pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
 gi|301016092|pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
           S-Adenosyl- L-Methionine Complex
 gi|301016093|pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
           S-Adenosyl- L-Methionine Complex
          Length = 277

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 20/171 (11%)

Query: 3   PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   +L + A+  G V++L   ++  NIG + R         + LV+      +++    
Sbjct: 106 PRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 165

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQ 119
           ++    V     V ++ +EA++ L          R+N  +++       + + +      
Sbjct: 166 ASRG-YVFSLPVVLADREEAVSFL----------RDNDIALMVLDTDGDLGVKDLGDRAD 214

Query: 120 NVGIIFGRER---WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            + ++FG E+    GL  E  A     +S P+     SLN+S +V + + E
Sbjct: 215 RMALVFGSEKGGPSGLFQEASA---GTVSIPMLSSTESLNVSVSVGIALHE 262


>gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 315

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 16/175 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   +N+  G  +IL +     N+G V R++  F    + +   R    +  A  +SA  
Sbjct: 154 ARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213

Query: 65  DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R   +   +++     + +    A   +              L+    +   V
Sbjct: 214 AARLPVARATNITRTVQQFQKSGYQVVGLDAGGEHT-------------LDTYNGATDPV 260

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ G E  G++       + I+S P+     SLN S A   ++ E       + 
Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315


>gi|117620534|ref|YP_857904.1| 23S rRNA methyltransferase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561941|gb|ABK38889.1| 23S rRNA methyltransferase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 168

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 24/154 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
            I LV+P+  EN+G V RA   +   ++     R     E AR  + +   +++ + +  
Sbjct: 26  CIGLVNPKSPENVGAVMRAAGCYGADEVYYTGNRF----ELARRFATDTKQMVEKIPLLG 81

Query: 74  FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +L E + A                  ++   E A  L + +        IFG E   L
Sbjct: 82  VDDLMEMVPAGCT-------------PVLVDLIEGATSLPDYVHP-ARAFYIFGPEDGTL 127

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                     +I  P       +N++ +V ++++
Sbjct: 128 DPARFKAVQEVIYVPTRGC---MNLAASVNVILY 158


>gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 286

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +   R  +N
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATMGSVFAMPLAR--AN 192

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++ +     A +  + AT      +++++               + + V ++ G E+ G
Sbjct: 193 AEDFLRWQRAAGVQ-VVATHLAGSVDYRTIDY-------------NSKPVVLLMGNEQAG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L  E    + A+   P +    SLN++ A  +M++E   + +   E
Sbjct: 239 LPVELAREAGALARIPQSGRADSLNLAIATGIMLFEARRHLLSLDE 284


>gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           amazonensis SB2B]
 gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B]
          Length = 240

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 18/172 (10%)

Query: 6   PQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSA 62
             L ++ + P ++IL       N+G   R      +    +V P+D     +      + 
Sbjct: 82  EALLDATETPFLLILDGVTDPHNLGACLRNADAAGVHG-VIV-PKDNSAGLTPTVSKVAC 139

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A                +  +  +  T  R             EA   L E    G  +
Sbjct: 140 GA------AETVP-----LFQVTNLARTMKRIQERGVWIAGTAGEADSTLYEANLKG-PL 187

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            I  G E  GL        + +IS P+     SLN+S A  + ++E +   +
Sbjct: 188 AIAMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLFEAVRQRL 239


>gi|91214829|ref|ZP_01251802.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
 gi|91187256|gb|EAS73626.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
          Length = 171

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 24/156 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVI------DSVRVFSNL 77
             N+G V R    F +  + +    R    S + + +S +A+  +      D   +    
Sbjct: 33  PANLGSVFRNSEAFGIVNIWIHEANRSYLKSNRLKRTSRSAEFNLNIHFYEDEASILDTF 92

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +           TT         +    E      + + S   + ++ G E+ G+ +E +
Sbjct: 93  E----------GTT-----IGIEITKNSENLSSFKKGLKS--KILLVLGNEKLGINSETL 135

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              +      +     SLN++Q + + ++E     I
Sbjct: 136 NRLDRSYHIKMFGTNSSLNVAQTLGIALYEIRREQI 171


>gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 277

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150
           R++      + P  +A  L++ +    G  V I+ G E  GLT   +  S+  +  P++ 
Sbjct: 195 RDKGFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTERTMRASDVRVRIPMSR 254

Query: 151 LFPSLNISQAVLLMVWECMENS 172
              SLN++ A  L  +E    S
Sbjct: 255 GTDSLNVATAAALAFYERARLS 276


>gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 394

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++G++ G E  G++       + I S P+     SLN S A  ++ +E +   +
Sbjct: 338 GSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFEVVRQRL 392


>gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           tuberculostearicum SK141]
 gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           tuberculostearicum SK141]
          Length = 315

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 16/175 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   +N+  G  +IL +     N+G V R++  F    + +   R    +  A  +SA  
Sbjct: 154 ARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213

Query: 65  DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R   +   +++     + +    A   +              L+    +   V
Sbjct: 214 AARLPVARATNITRTVQQFQKSGYQVIGLDAGGEHT-------------LDTYNGATDPV 260

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ G E  G++       + I+S P+     SLN S A   ++ E       + 
Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315


>gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
 gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18]
          Length = 249

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           LQ    G +++L   Q   N+G + R+        + +   R    +     +SA A   
Sbjct: 90  LQGEGNGLILVLDSVQDPHNLGALIRSAACAGANAVVIPKDRAAGVTAVVEKASAGATET 149

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   +V +N+ +A+  L          +  F    A   A   L ++ F+G  V ++ G 
Sbjct: 150 VAVAQV-TNISQALETL---------KKAGFWIYGADGSAKHTLYQQDFTG-PVALVIGG 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E  G+        + ++S P+     SLN S A  + ++E +   +   
Sbjct: 199 EGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLFEVVRQRLTKK 247


>gi|326517717|dbj|BAK03777.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 16/180 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIA 82
            N+    R+     +  + +++  D       R  S  A+  +D + ++S+  E   A+ 
Sbjct: 166 GNVSAAFRSADALGVQSVHVISCEDNKRYRDNRHVSMGAEKWLD-IELWSSPAECFDALK 224

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  A T+   ++                         I+ G E  G+++  + LS+ 
Sbjct: 225 KRGYRIACTSLGSDSVSVYDM------------DWSHPTAIVVGNETMGISDVALKLSDM 272

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEIS 202
             S P+  +  S N+S A  +++   + + +    +N               +L + E +
Sbjct: 273 HCSVPMKGMVDSFNVSVAAGILMHHAVYDRVSRLGQNGDLTPEENRILLAEFYLRHREST 332


>gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
           crispatus ST1]
 gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus ST1]
          Length = 251

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++++ T                A     E    G+ V ++ G E  G+       
Sbjct: 169 LKKRGYWVFGT--------------DMAGTDYREWNAQGKTV-LVIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I+ P+     SLN S A  +++++   + 
Sbjct: 214 MDQTITLPMVGHVQSLNASVATGVLLYQAYNSR 246


>gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 234

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L    K  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELVGKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y                   A +          
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EANISYNEEDYSNK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 VVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|257056552|ref|YP_003134384.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256586424|gb|ACU97557.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 257

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 10/149 (6%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV+     N G V R         +          + K   +S  +   +  V    ++
Sbjct: 111 VLVNIADPGNAGTVLRVADAAGADAVIFAGSCVDVHNGKCVRASTGSLFHLP-VVAEPDV 169

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              +        TT       ++ L   E                 +FG E  GL  + +
Sbjct: 170 HRVLDACVAAGLTTVAAHGYAEADLTTAEQL---------DGPTAWLFGNEAHGLPEDVL 220

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +   +  P+     SLN++ A  + ++
Sbjct: 221 ARAEHAVRVPLYGKAESLNLATAAAVCLY 249


>gi|256371686|ref|YP_003109510.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008270|gb|ACU53837.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 316

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 25/156 (16%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID----SVRVFSNLKEAI 81
           EN+G + R    F    L L +P    P  + RS   +A  ++         + +    +
Sbjct: 149 ENLGALGRNAAAFGACALVL-DPTSADPRNR-RSVRVSAGHLLTLPLVRATPWPSALALL 206

Query: 82  ADLHFIYA------TTARNRNNFKSVLAPKEAAIVLNERIFSGQ-------------NVG 122
           A      A      +T R R      L P      L E I   +              V 
Sbjct: 207 ARSQVRIAALVPPASTQRLRTERTCDLTPVVTVDELAEAIGEPRHARAPGEHDLPRPRVA 266

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           ++ G E  GL+   +A ++ +++ P+     S+N++
Sbjct: 267 LLVGSEGHGLSPSALAYADVLVTIPIANGVDSVNLA 302


>gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           K90mix]
 gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           K90mix]
          Length = 251

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 25/164 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
           V++L       N+G   R           +V PR      +  A   ++ A   +  V  
Sbjct: 104 VLVLDGVTDPHNLGACLRTADAAGAG--AIVTPRHHSAALTPAAIKVASGAAETVP-VVA 160

Query: 74  FSNLK---EAIADLH-FIYAT-TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             NL     A+ D   +      A + + +   L P                  I+ G E
Sbjct: 161 VGNLARTLAALKDAGMWTVGLDGAAHEDLYAVDLRP---------------PTAIVMGAE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+        + +   P+     SLN+S A  + ++E     
Sbjct: 206 GEGMRRLTREACDHLARIPMGGTVESLNVSVATGITLFEARRQR 249


>gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
           19.5.1]
 gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
           19.5.1]
          Length = 250

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 38/181 (20%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI---- 68
           +  +++L   Q   N+G + R+                        S +A AD VI    
Sbjct: 95  RSLLVLLDRIQDPHNLGAIIRS------------------------SVAAGADGVIITEK 130

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--------- 119
            SV V   + +    L F      R  N  +++   KE           G+         
Sbjct: 131 ASVEVTPAVVKVSTGLVFRIPI-VRVVNMARTIETLKEEGFWTYAATMEGEPYYSVSFTD 189

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
              +IFG E  G+ +     S+ ++S P+     SLN++ +  +M++E      +    N
Sbjct: 190 KAALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLNVAASAAIMLFEYRRQWALREGVN 249

Query: 180 V 180
            
Sbjct: 250 P 250


>gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 261

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSVRVFSN 76
           Q   N+G + R         + L        +EK   S+  +   +      +++ +  +
Sbjct: 120 QDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSLFYVPVHYDDENMTLVKS 179

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LK+                  FK V+   +      +    G  V +  G E  G+++E 
Sbjct: 180 LKD----------------KKFKIVVTSLDTDKDFFQESLKG-KVLLTVGNEGNGVSDEV 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             L++  +  P+     SLN++ A  ++++E +   +
Sbjct: 223 YELADTKVKIPMPGNAESLNVAIATSVIMYEKIRQDL 259


>gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 357

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA---DCVIDSV 71
           + L       N+G + R++  F      +V P  R    +  A  +SA A     V  + 
Sbjct: 206 VALDGITDPRNLGAIIRSVAAFG-GHGVIV-PQRRSVGLTASAWKTSAGAAARTPVAMAS 263

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   LK       F+         +             L+E   + + + ++ G E  G
Sbjct: 264 NLTQTLKALKQRGVFVVGLDGGGDMS-------------LHEFTLADRPIVVVVGSEGKG 310

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           L+       + I+S P+     SLN   A  + ++E  +    +  K
Sbjct: 311 LSRLVTETCDTIVSIPIGASTESLNAGIAASVTLYEIGKLRAAARRK 357


>gi|126664480|ref|ZP_01735464.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
 gi|126630806|gb|EBA01420.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
          Length = 262

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 23/160 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI--DSVR 72
            I L + Q   N+G + R +  F   +  L++P    P + K   +S  A   +  ++  
Sbjct: 122 AIYLHEVQDPGNLGTILRTLAWFGGFR-CLLSPGSVDPYNPKVVRASMGAIFHLPLETDV 180

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++L E     H +       R+  +   A  +                 +FG E  G+
Sbjct: 181 ELASLSE---RFHRLACLDLNGRSLTEPGFADHDC---------------YLFGNEARGI 222

Query: 133 TNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMEN 171
             + +   NA   +        SLN++ AV +  WE M +
Sbjct: 223 PAQALDELNATAYTINGKGQIESLNLASAVNICSWELMRS 262


>gi|1709266|sp|P52391|NHS_STRAS RecName: Full=23S rRNA methyltransferase; Short=23S rRNA methylase
 gi|1654411|gb|AAB17875.1| 23S rRNA methyltransferase [Streptomyces actuosus]
          Length = 274

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 20/171 (11%)

Query: 3   PYAPQLQNSAK--GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   +L + A+  G V++L   ++  NIG + R         + LV+      +++    
Sbjct: 103 PRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLR 162

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQ 119
           ++    V     V ++ +EA++ L          R+N  +++       + + +      
Sbjct: 163 ASRG-YVFSLPVVLADREEAVSFL----------RDNDIALMVLDTDGDLGVKDLGDRAD 211

Query: 120 NVGIIFGRER---WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            + ++FG E+    GL  E  A     +S P+     SLN+S +V + + E
Sbjct: 212 RMALVFGSEKGGPSGLFQEASA---GTVSIPMLSSTESLNVSVSVGIALHE 259


>gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
           17678]
 gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
           17678]
          Length = 256

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 20/165 (12%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
                  S    V++L   Q   N+G + R         + +        + K   S+  
Sbjct: 98  SKEDFDPSRHRKVLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVRSAMG 157

Query: 64  A----DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +    D +++S  V  ++   +        +++ + +N+              + +    
Sbjct: 158 SGFYMDILLESQEVILSI---LKGAGLQIVSSSLDTDNY-------------YDEVTYAD 201

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
              ++ G E  G+ +  I  S+ ++  P+     S N++ +  L+
Sbjct: 202 GCALVLGNEANGINDFWIENSDLLVKIPMYGKAESFNVAISAALL 246


>gi|301787005|ref|XP_002928920.1| PREDICTED: probable methyltransferase TARBP1-like [Ailuropoda
            melanoleuca]
          Length = 1548

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 23/162 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++
Sbjct: 1401 PTNVGGLCRTCEVFGASALV-VGSLQCVTDKQFQGLSVSAEQWLPLVEVKPPQLIDFLQQ 1459

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              A+ + +     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 1460 KKAEGYTVIGVEQTAKSVDLSQ-YSFP--------------ERSLLLLGNEREGIPANLI 1504

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               +  +  P   +  SLN+  +  L++WE     ++     
Sbjct: 1505 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLRHGDT 1546


>gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1,
           mitochondrial-like [Pongo abelii]
          Length = 353

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 31/201 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N G V R+     + +  + + R+  P +     SSA A  V+D   VFS 
Sbjct: 149 VLDGIQDPHNFGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKSSAGAMEVMD---VFST 204

Query: 77  ------LKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRE 128
                 L+        +  T         S   P+  E  I         +   ++ G E
Sbjct: 205 DDLTGFLQTKAQQGWLVAGTVG-----CPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNE 259

Query: 129 RWGLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENS-----IVSSE 177
             GL+ E  A    +++       P  P   SLN+S A  +++                +
Sbjct: 260 GSGLSQEVQASCQLLLTILPRRQLP--PGLESLNVSVAAGILLHSICSQRKGFPTDGERK 317

Query: 178 KNVKEQNTPATKGELLSFLDY 198
           + + +   P+ + E LS   +
Sbjct: 318 QLLXDPQEPSARSEGLSMAQH 338


>gi|281342333|gb|EFB17917.1| hypothetical protein PANDA_018980 [Ailuropoda melanoleuca]
          Length = 1374

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 23/162 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++
Sbjct: 1228 PTNVGGLCRTCEVFGASALV-VGSLQCVTDKQFQGLSVSAEQWLPLVEVKPPQLIDFLQQ 1286

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              A+ + +     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 1287 KKAEGYTVIGVEQTAKSVDLSQ-YSFP--------------ERSLLLLGNEREGIPANLI 1331

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               +  +  P   +  SLN+  +  L++WE     ++     
Sbjct: 1332 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLRHGDT 1373


>gi|261337350|ref|ZP_05965234.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
 gi|270277727|gb|EFA23581.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
          Length = 293

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 19/160 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-----FSNLK-- 78
           N+G + R+    ++    LV P    P   +A   S      +   R+            
Sbjct: 137 NVGAIMRSAAALDV-DAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGEGDVRTADKH 195

Query: 79  -------EAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                  E +  L F   A    + +     L  +  +  L         + +IFG E  
Sbjct: 196 AWPEAGLEQLHGLGFTTVAMALTDDSISMQELERRLRSDPLERDHID--KLALIFGTEGD 253

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           GL++  IA ++  +  P++    SLN++ +  +  +   +
Sbjct: 254 GLSHTTIAHADLTVKIPMSHGVDSLNVAASSAVAFYATRK 293


>gi|94986499|ref|YP_594432.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730748|emb|CAJ54110.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
          Length = 290

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 34/170 (20%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQL----RLVNPRDG--WPSEKARSS 60
           ++ ++    +++    Q   N G + R      L  L     ++ P+    +  + AR +
Sbjct: 130 KVPDAPLPLIVVFDQIQDPGNAGTIIRT-----LYSLGGAGVII-PKHNGVFLGQDARRA 183

Query: 61  SANADCVIDSVRVFS--NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114
           +      ++ + +    NL  AI   +     IY T+     + K+V   +     L   
Sbjct: 184 AVGC---LERLPISKAINLSRAIETANEKGFHIYGTS--IEKDSKNVFEAELKFPAL--- 235

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
                   +I G E+ G+  +     + I+  P+     SLN++QA  ++
Sbjct: 236 --------LILGSEKSGIRLQLKKRCHTILHIPMVRDVNSLNVAQAGGII 277


>gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 261

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 22/177 (12%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P  +  A+   ++L   Q   N+G + R      +    L+ P      S +   + 
Sbjct: 103 PVPPPTRAFAESL-LVLDGVQDAGNLGTILRTAAAAGMRD-VLLTPGCAQAWSPRVLRAG 160

Query: 62  ANADCVI---DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                 +   +   V + L +            A  R  ++  L                
Sbjct: 161 MGGHFCLRLYEHADV-AVLLQGYPGQILATGLGAGARGLYEMDLR--------------- 204

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             V  +FG E  GL+    AL+   +  P+     SLN++ A  + ++E +    V+
Sbjct: 205 GTVAWLFGAEGRGLSMAVAALATDTVVIPMPGAVESLNVAAAAAVCLFEQVRQRRVA 261


>gi|119025735|ref|YP_909580.1| tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
 gi|154487443|ref|ZP_02028850.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
           L2-32]
 gi|118765319|dbj|BAF39498.1| possible tRNA/rRNA methyltransferase [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154083961|gb|EDN83006.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
           L2-32]
          Length = 292

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 35/165 (21%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------------ 73
           N+G + R+    ++    LV P  G P   +A   S      +   R+            
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIGGDDKHYWPFTG 195

Query: 74  --------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                   F+ +  A+ D     A         + +   +  +  +++       + +IF
Sbjct: 196 MRELHDLGFTTVAMALEDDSISLA------ELVRRLNNAETESDHIDK-------LALIF 242

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  GL++  I+ ++  +  P++    SLN++ +  +  +    
Sbjct: 243 GTEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFYATRR 287


>gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
           HUB-1]
 gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
           HUB-1]
          Length = 225

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 18/155 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSV 71
           +++L   Q   N+G + R+     +  + L        ++     S+        ++ + 
Sbjct: 83  ILVLDHIQDNHNLGAIIRSANAAGIKHIILPKDNCAKINDSVIRISSGGFVGIKFILVNS 142

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +  ++      +IYA++       K +           ++I   Q   I+ G E  G
Sbjct: 143 -LLATFEKLKKHNFWIYASS--LSKTAKPL-----------DQIVFNQPSAIVLGSEAKG 188

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++   +  S+ I   P+     SLN+S A  ++++
Sbjct: 189 ISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223


>gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 245

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 26/172 (15%)

Query: 9   QNSAKGPVIIL---VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           +++ + P++IL   V+     N+G + R       T   L+  R   P            
Sbjct: 87  ESNHENPLLILTDGVE--DPHNMGAIIRTAECVGATA-VLIPKRHNAPI----------- 132

Query: 66  CVIDSVRVFSNLKEAIADLHFI-YA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
               +  V      A+  +  +       T  + +     VL                  
Sbjct: 133 ----NATVAKTSAGAVEQIPLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADLTIP 188

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             ++ G E  G++       + +++ P+     SLN S A  ++++E +   
Sbjct: 189 TVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQR 240


>gi|327405561|ref|YP_004346399.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327321069|gb|AEA45561.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 225

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 11/165 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +   ++L +     N   V R+   F + +L +V  ++ +  ++  +  A     + +  
Sbjct: 30  RHLTVLLEEIFQEHNASAVIRSCDCFGIQELHVVESKNKYKVQRDIARGAGRWVDLFNYN 89

Query: 73  VFSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L +A+  L        +++    + L P   A      +   Q V + FG E  G
Sbjct: 90  EGPTPLLDAVNKL--------KSKGYKIAALTPD--AEHSIFDLPLDQPVALSFGTEWEG 139

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +++E   +++  +S P+     S N+S +V L +    +  I S 
Sbjct: 140 ISDEIREIADYKVSIPMVGFTESFNVSVSVALTLQALRQRLIESE 184


>gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           rhamnosus GG]
 gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 260

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + +   R    +      S  A   +   RV +NL + I 
Sbjct: 119 EDPHNLGSILRTADASGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 177

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +I+ T    ++        ++          +  +  ++ G E  G++     
Sbjct: 178 ILKDRGMWIFGTAMDGQDY-------RQW--------DAKGSTALVIGNEGKGISPGIAK 222

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +A I+ P+     SLN S A  +++++   + 
Sbjct: 223 LMDATIAIPMAGHVQSLNASVAAGILMYQAFASR 256


>gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
 gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
          Length = 272

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 13/156 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +  +N+G + R      +  + L        +E     SA A   +   R+ +       
Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGN------- 180

Query: 83  DLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                 A T R  +     +         + +R      + ++ G E  G++     L +
Sbjct: 181 -----IAQTIRALKEQGFWIAGADMGGEEIYDRANLTGALVLVIGSEGRGMSRLTRDLCD 235

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +  P+     SLN S A  ++++E        + 
Sbjct: 236 FTVRLPMMGKINSLNASVAGAILMYEAQRQRRAKAA 271


>gi|254502349|ref|ZP_05114500.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438420|gb|EEE45099.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 156

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 64/165 (38%), Gaps = 11/165 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P I L  P + +N G + R +   ++T + L+ P     S+ A   +      ++     
Sbjct: 2   PDIALYQPDIPQNTGTMLRLVACMSVT-VHLIEPAGFPLSDSALKRA--GMDYLERA--- 55

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
                A+       A     R + + ++       +         +  ++ GRE  G  +
Sbjct: 56  -----ALKRHLNFAAFDDWRRTHNRRLVLLTTKTDLAYTDFEFAADDILLLGRESTGAPD 110

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               L++A ++ P+     SLN++ +  +++ E +  +    +++
Sbjct: 111 AIHQLADARLTIPMAEGMRSLNVAVSCGMVLGEALRQTRAFPKRS 155


>gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly]
 gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly]
          Length = 244

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 13/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANAD 65
           + Q+     ++IL   +  +N G + R    FN+  L + N R     +E    +S+ A 
Sbjct: 87  EFQHKNNILILILDSIEDPQNFGAILRTAEQFNI-DLVITNQRKSVKDNETVLRTSSGAS 145

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++ + V  N+   I             +     + A       +N    +   + +I 
Sbjct: 146 QYVNKLTV-PNINNVIR----------YLKKQGFWIYASDIKGQAINNTKITDNKIALIM 194

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  G+ N     S+ +I  P      SLN+S +  ++++E    
Sbjct: 195 GNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ 240


>gi|256851486|ref|ZP_05556875.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260660907|ref|ZP_05861822.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282933486|ref|ZP_06338862.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297206301|ref|ZP_06923696.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256616548|gb|EEU21736.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548629|gb|EEX24604.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281302417|gb|EFA94643.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297149427|gb|EFH29725.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 185

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 17/191 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L +P +  N G +AR          L L+ P       K    +       D V +  
Sbjct: 5   IVLFEPLMPANTGNIARTCA--GTETVLDLIEPLGFQLDNKKMKRA--GLDYWDKVEIHK 60

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +LK  +         T    +    +      +    +   + +N   +FG+E  GL 
Sbjct: 61  HDDLKAFLD--------TLGPNDEMYLISKFSSKSYTDVDYTDNNKNYYFVFGKETTGLP 112

Query: 134 NEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
              +    +  +  P++    + N+S +  +++ E +        +          K + 
Sbjct: 113 ETFMREYYDRNLRIPMSDHIRAYNLSNSAAMVIMEALRQQGFPKLEKSHHYENDKLKDDY 172

Query: 193 LSFLDYLEISL 203
               +  E +L
Sbjct: 173 NR-HERYERNL 182


>gi|205356595|ref|ZP_03223358.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345600|gb|EDZ32240.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 227

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 13/150 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L       NIG + R  +   +  L  +           R+SS  A  +   + + +
Sbjct: 85  IVMLYGISDVGNIGAITRTAYALGVGALIFIG-EKLAMEGVIRTSSGAALDLP--IVISN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +    I +L  +      +  + K + +          +I +G+ V ++ G E +GL+++
Sbjct: 142 DALSVINELKQVGFYFYASDGSGKEIHSV---------KISNGKKV-LVLGSEGFGLSSK 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            +   +  +   +   F SLN+S A  ++ 
Sbjct: 192 IVKKCDECVGIVMKNNFDSLNVSAAFAILC 221


>gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
 gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
          Length = 239

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 23/149 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIADL 84
           NIG + R+   F++  + L  P+D  P+E      ++     +I  ++V +NL+  +  L
Sbjct: 108 NIGAIIRSAAAFDINAILL--PQDNAPNESGGIAKAACGTLELIPIIKV-TNLRSCMNYL 164

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +I   T    + F                 F    + ++FG E  G+        
Sbjct: 165 KKHGFWIIGLTGSANDYF--------------TNKFITNKIALVFGSEDKGMRKLVEKTC 210

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169
           + +   P++    SLN+S A  ++     
Sbjct: 211 DYLAKIPISKRVESLNVSNAASIIFHLLY 239


>gi|73952576|ref|XP_536342.2| PREDICTED: similar to TAR RNA binding protein 1 [Canis familiaris]
          Length = 948

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 23/162 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
             N+G + R    F  + L +V+       ++ +S S +A+  +  V V        L++
Sbjct: 801 PTNLGGLCRTCEVFGASAL-IVDSLQCVRDKQFQSLSVSAEQWLPLVEVKPPQLIDFLQQ 859

Query: 80  AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A+ + +     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 860 KKAEGYTVIGVEQTAKSVDLTQ-YSFP--------------ERSLLLLGNEREGIPANLI 904

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
              +  +  P   +  SLN+  +  L++WE     ++  E  
Sbjct: 905 QELDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLRHEDT 946


>gi|17227671|ref|NP_484219.1| rRNA methylase [Nostoc sp. PCC 7120]
 gi|17135153|dbj|BAB77699.1| rRNA methylase [Nostoc sp. PCC 7120]
          Length = 273

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%)

Query: 17  IIL-VDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           ++L ++  Q   N+G + R       + L L        + K   +SA     + +  V 
Sbjct: 124 VVLALETIQDPGNLGTIIRTAAAAGASGLLLSQDSVDLDNPKVLRASAGQWFRLATA-VS 182

Query: 75  SNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +LK  +         + AT    +  +                I   +   I+ G E  
Sbjct: 183 EDLKATVQLCQQAGMQVVATLPTAKLTYW--------------EIDWRKPSLILLGNEGA 228

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           GL+ +  A+++  +  P++P   SLN++    LM++E    
Sbjct: 229 GLSPDLAAMADQEVKIPLSPGVESLNVAITSALMLYEVQRQ 269


>gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
 gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
          Length = 285

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 61/167 (36%), Gaps = 21/167 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L   +   N+G + R       + + LV       S +   ++  +   +   R  ++
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAMPVAR--AS 192

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            ++ +     A +  + AT      +++++                 + V ++ G E+ G
Sbjct: 193 AEDFLRWQRSAGVQ-VVATHLSGSVDYRTIDY-------------RSKPVVLLMGNEQAG 238

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           L  E    + A+   P      SLN++ A  +M++E   + +     
Sbjct: 239 LPAELAREAGALARIPQAGRADSLNLAIATGIMLFEARRHLLSLDAP 285


>gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2150]
 gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2150]
          Length = 266

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 13/146 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRV---FSNLKEA 80
             N+G + R+          +   R+  P   A + +++ A      VR+      ++E 
Sbjct: 122 PHNVGAILRSAEVLGAAA-VIATKRNAAPETGALAKTASGALERQPYVRIRNLADTMEEM 180

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            A  + +        +  ++V+         +      + + ++ G E  GL ++  A  
Sbjct: 181 KALGYILLGLDGEAEDTMETVI--------ASTLANGPRPIALVLGAEGPGLRDKTKATC 232

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
           +A++       F SLN+S A  + ++
Sbjct: 233 DALMRIDSAGAFGSLNVSNAAAVSLY 258


>gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA
 gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis]
 gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 16/149 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEA 80
           Q   N+G + R      L  + L +      + K   S+  +   I  VR  + S + E 
Sbjct: 113 QDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVRRNLPSYVDEL 172

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            A+   +Y T  +N   +              + I   ++  +I G E  G+    +  +
Sbjct: 173 KAEGVKVYGTALQNGAPY--------------QEIPQSESFALIVGNEGAGVDAALLEKT 218

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +  +  P+     SLN++ A  ++V+   
Sbjct: 219 DLNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|313611167|gb|EFR85991.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Listeria
           monocytogenes FSL F2-208]
          Length = 59

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            + I+ G E +G++       + ++  P+     SLN S A  L+++E   
Sbjct: 2   PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 52


>gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162]
          Length = 258

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +R    +    + G E  GLT+     ++ +I  P+     SLN + A  ++++E     
Sbjct: 197 DRESYQEGTAFLIGNEGKGLTDRAADAADCLIRIPMCGHVESLNAAMAGGILMYEAARQR 256


>gi|224532063|ref|ZP_03672695.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116]
 gi|224511528|gb|EEF81934.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116]
          Length = 218

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             + + FG E  GL+ E +  ++  +  P+     S NIS AV ++++  +
Sbjct: 127 NKMAVFFGTELTGLSAEVLGAADLYVKIPMYGFTQSYNISVAVGIVMYSLL 177


>gi|116073360|ref|ZP_01470622.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
 gi|116068665|gb|EAU74417.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
          Length = 284

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 24/182 (13%)

Query: 14  GPVIILV--DPQLGENIGMVAR-AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-- 68
            P  +L     Q   N+G + R AM      ++          + K   SS  A   +  
Sbjct: 113 SPAFVLALDRIQDPGNLGTLLRTAMAA--DVEMVWQGSGADPLNPKVVRSSTGAVLKLPL 170

Query: 69  ------DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                 ++  +      L +A      + AT         SV+   E    L        
Sbjct: 171 HRFGPAEAAGITELKQTLHQARDRGLQVVATLVPGAGGPLSVVPYWELDWRL-------- 222

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
              ++ G E  GL  E +      ++ P +P   SLN++ A + ++ E    ++ +  + 
Sbjct: 223 PTVLVLGNEGRGLHPELLDCCTHGVTLPHSPAVESLNVASAAVPLLLERRRATMTAPSQQ 282

Query: 180 VK 181
             
Sbjct: 283 SG 284


>gi|184201210|ref|YP_001855417.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581440|dbj|BAG29911.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 316

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 12/148 (8%)

Query: 46  VNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV- 101
           V+P     + KA  S+A +     V+  V + S +  A      + A     R +   + 
Sbjct: 173 VDPY----NPKAVRSTAGSLFHLPVLTGVDLVSFVAAARERSVQVLAADGHARASVDELA 228

Query: 102 ----LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
               L     A      +        +FG E  GL++ E+ L++  ++ P+     SLN+
Sbjct: 229 DAALLHWAGTAPHSEHEVRLDGPTAWLFGNEAQGLSDAELELADLPVAVPLYGRAESLNV 288

Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNT 185
             A  + ++        +         +
Sbjct: 289 GTAATVCLYASARAQRRAGGVVTGPGTS 316


>gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6]
 gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF]
 gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6]
 gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF]
          Length = 254

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 21/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   N+G + R    F +  + L        S K   S   ++  +  ++   +L E I 
Sbjct: 118 QDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ--KDLAEVIP 175

Query: 82  ----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                    +Y T                      +++   ++  II G E  G++ E +
Sbjct: 176 VMKGKGFT-VYGT-------------ELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEIL 221

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + ++  +  P+     SLN+  A  ++++
Sbjct: 222 SSTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax]
          Length = 454

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAII----SFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  N  ++ G E  GL+ E + L+   +      PV P   SLN + A  ++++E     
Sbjct: 382 AQSNTALVIGGETHGLSLEALQLAEKTLGQRLFIPVVPWVDSLNSAMAASILLFEGRRQL 441

Query: 173 IVSSEKNVKEQ 183
           +  +E  + +Q
Sbjct: 442 LNLTETRLPQQ 452


>gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
           10507]
          Length = 260

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L D Q   N+G + R         + L        + K   S+  +   +  V +  N+
Sbjct: 113 VLEDLQDPGNVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMGSIYRMPFVYI-ENM 171

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER-IFSGQN----VGIIFGRERWGL 132
           +EA+  L              K V      A  L  +  + G++         G E  GL
Sbjct: 172 EEALRLL------------KKKKVST---YAAHLQGKNTYDGESYLRGTAFFVGNEGNGL 216

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + +    ++  I  P+     SLN + A  ++++E     
Sbjct: 217 SRQLSEKADCWIRIPMEGQVESLNAAMAAGILMYEAGRQR 256


>gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 255

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 27/178 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVF- 74
           +L       N+G   R+     +  + L  PRD     +   R +SA +   +    V  
Sbjct: 97  VLDGVLDPHNLGACLRSAEAAGVDAVIL--PRDNACPVNATVRKASAGSASRVPVCTVTN 154

Query: 75  -----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                S+L+EA      +      +R+ +   L                  + ++ G E 
Sbjct: 155 LSRTLSSLQEA--GFWLVGMAGEGSRSLYALDLDM---------------PLVMVMGGEE 197

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
            GL        + +   P+     SLN+S A  + ++E        S      Q   A
Sbjct: 198 KGLRRLTREHCDYLAHIPMMGAIESLNVSVATGICLFEAARQRRNLSPARPVAQEKSA 255


>gi|195354200|ref|XP_002043587.1| GM17520 [Drosophila sechellia]
 gi|194127755|gb|EDW49798.1| GM17520 [Drosophila sechellia]
          Length = 407

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
              +L +      ++  + +   N+G + R       +Q+ + +        KA      
Sbjct: 225 EQQRLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCG 284

Query: 64  A--DCVIDSVRVFSNLK-----EAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERI 115
                 I     +  L      EA  D H   A +  R R N +++       +      
Sbjct: 285 GQFRVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGL------ 338

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECM 169
             G +  +I G E  G++ E     N        I  P+     SLN++ A+ L+++E  
Sbjct: 339 --GAHNLLIIGGESHGVSEEAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELR 396

Query: 170 E 170
            
Sbjct: 397 R 397


>gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
 gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
          Length = 242

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P A + +++++   + L + Q   N+G + R +  F   +  L++P    P + K   +S
Sbjct: 89  PPATRGESASREKALYLHEVQDPGNLGTILRTLAWFGGFR-CLLSPGSVDPFNPKVVRAS 147

Query: 62  ANA--DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             A     +++      L +  A    I        +  K     ++             
Sbjct: 148 MGAIFHVPLETEVALDTLGQRYA---RIACLDIGGDSITKPEFQAQDC------------ 192

Query: 120 NVGIIFGRERWGLTNEEIALSNAII-SFPVNPLFPSLNISQAVLLMVWECMEN 171
               +FG E  G+  + +    A   + P      SLN++ AV + V+E    
Sbjct: 193 ---YLFGNEARGVPKQALTELGAHAYTIPGAAAIESLNLASAVNMAVYELNRA 242


>gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
           piscolens W5455]
 gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
           piscolens W5455]
          Length = 269

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 19/168 (11%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L   A   +++L   Q   N+G V R         +   N R    +     +SA A  
Sbjct: 107 ALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAACVVCQNDRSATVNGTVVKTSAGAAF 166

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +V  N+  A+  L     ++     R      S   P              + + 
Sbjct: 167 RLPVAQVV-NVGRAVERLKRKGFWVVGLDHRTDETVWSSALP--------------ERLA 211

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++ G E  G++       + ++ FP+     +LN S A  L ++E + 
Sbjct: 212 LVVGSEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMFEWVR 259


>gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
 gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
          Length = 255

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70
           I+L + +   N+G + R         + +   R    +     +SA A        V + 
Sbjct: 110 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 169

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +    LKE    L F+ A                +       R+     +G++ G E  
Sbjct: 170 AKTMEELKE--KGLWFVCA----------------DMGGESMYRLNLKGPIGLVIGNEGE 211

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G+        + + S P+     SLN S A  ++ +E +   
Sbjct: 212 GVGRLVKEKCDFVASIPMKGEIDSLNASVAAGVLAYEIVRQR 253


>gi|119716688|ref|YP_923653.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119537349|gb|ABL81966.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 237

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 +FG E WGL  E  AL++  +  P+     SLN+S A  L ++
Sbjct: 181 AGPSAWLFGNEAWGLPEELAALADHRVRIPIYGRAESLNLSTAAALCLY 229


>gi|13472427|ref|NP_103994.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14023173|dbj|BAB49780.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 152

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            I L  P +  N G + R  A     +    ++ P     S+KA   +      ++   +
Sbjct: 6   RIALYQPDIAGNTGTILRFAACLGLGVD---IIEPAGFPLSDKALKRA--GMDYLEMAAL 60

Query: 74  FSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++   A  D         R ++  + VL   +AA       F+  ++ ++FGRE  G+
Sbjct: 61  TRHVDWNAFED--------RRKKDGRRLVLLSTKAATPYTNFSFADGDI-LLFGRESAGV 111

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +     ++A ++ P+     S+N++ +V ++  E +  
Sbjct: 112 PDPVHQAADARLTIPMQGSARSINVALSVAMVAGEAIRQ 150


>gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 249

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 17/168 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + +  V+IL   Q   N+G   R+     +T + +   +    +   R +SA A   I  
Sbjct: 96  AGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAADRIPV 155

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGR 127
           V V +     +A            R+  K  +     A      ++S     NVG++ G 
Sbjct: 156 VAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVGLVLGG 201

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           E  GL        + ++  P+     SLN+S A  + ++E +   + +
Sbjct: 202 EADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFEAVRQRLGA 249


>gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 310

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 11/162 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S    ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I  
Sbjct: 158 SPPPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 217

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            R  +NL   + D            +    V+        + + +     + ++ G E  
Sbjct: 218 AR-ATNLTRTLKDWA----------DRGIRVIGLDAGGDTVVDDLDGADPLVVVVGSEGK 266

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL+       + ++S P+     SLN S A  +++ E     
Sbjct: 267 GLSRLVRQNCDEVVSIPMAGQAESLNASVAAGVVLAEIARQR 308


>gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
           DSM 18053]
 gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
           DSM 18053]
          Length = 256

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 23/153 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI---- 81
           N G +AR      + Q  +V  + G   +  A  +S+ A   +   R   NL E +    
Sbjct: 120 NFGAIARTAECAGV-QAIIVPTKGGAQINADAMKTSSGALNFLPICR-EPNLYETLTYLR 177

Query: 82  -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            + L  I  T   +++ +                        II G E  G++ E I L+
Sbjct: 178 NSGLQIIACTEKTDKSLYDIDFTV---------------PTVIIMGSEEDGISKEFIDLA 222

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++    P+     SLN+S A  ++++E +   I
Sbjct: 223 DSGARIPLAGQVESLNVSVASSVVLYEAVRQRI 255


>gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 251

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 10/149 (6%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++   +   N+G V R+   F    + L   R    +      +A     +    + S+
Sbjct: 103 VVVDHLEDPHNLGAVLRSAAAFGADGVVLPRYRSVPLTPTVTKVAAGGVEWLRFA-LVSS 161

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +  A+  L        R R    SV    +AA  +     + + + ++ G E  GL    
Sbjct: 162 IPAALRRL--------RARGV-WSVGLDADAATSVFSLTLATERLALVVGAEGRGLAPLV 212

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMV 165
               +   + P+     SLN S A  + +
Sbjct: 213 RRGVDVTAAIPLAATVASLNASVAASIAL 241


>gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 249

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 19/173 (10%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L  +A+G  ++L+    Q   N+G   R+     +T + +   +    +   R +SA A 
Sbjct: 91  LVEAAQGRALVLILDGVQDPHNLGACLRSAAAAGVTAVVIPKDKSATVNATVRKTSAGAA 150

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
             I  V V +     +A            R+  K  +     A      ++S     NVG
Sbjct: 151 DRIPVVAVTN-----LARC---------LRDLQKQGVWLYGLAGEAEASLYSVDLRGNVG 196

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++ G E  GL        + ++  P+     SLN+S A  + ++E +   + +
Sbjct: 197 LVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFEAVRQRLGA 249


>gi|298531014|ref|ZP_07018415.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509037|gb|EFI32942.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 240

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 11/143 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G +AR +       + +   R       A  +SA A   I   +V +NL   + 
Sbjct: 102 QDPGNLGTLARTLAALGGAGIIIPRDRSAPLGPGAMKASAGALNRIGVAQV-TNLARTLD 160

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +          +  F    A  +    + E+ F      ++ G E  G+    +     
Sbjct: 161 HID---------QAGFNIYAATMDQGQSVLEQTF-VFPAVLVLGGEEKGIRPNVLKRCPG 210

Query: 143 IISFPVNPLFPSLNISQAVLLMV 165
            I  P+     SLN++ A  L++
Sbjct: 211 KIHIPMAGGMDSLNVAHAGALIL 233


>gi|283786196|ref|YP_003366061.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282949650|emb|CBG89269.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 345

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDSIVNVLDDFR 266

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + +  T+    +  K +      A  L E+      + ++ G+E  GL +      +
Sbjct: 267 QAGYTVVTTSG---DRGKPL-----FATALPEK------MVLVLGQEADGLPDAARDPDD 312

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +         SLN+S    +++ E    
Sbjct: 313 LCVKIDGTGNVESLNVSVVTGILLAEWWRQ 342


>gi|209694822|ref|YP_002262750.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238]
 gi|208008773|emb|CAQ78972.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238]
          Length = 152

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 34/159 (21%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSS-----SANADCVI 68
            I LV+P+  EN+G V RA   +       VN     G   + A+       S + +  +
Sbjct: 7   CIGLVNPKTPENVGSVMRAAGCYG------VNSVFYTGRRYDIAKKFCTDTKSQHLNVPL 60

Query: 69  DSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                  +LK+ I  D   +              +   E A  L +          IFG 
Sbjct: 61  IG---VEDLKDIIPLDCVPVA-------------VDLIEGAKPLPDYKHP-PRAFYIFGP 103

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E   L  E        I  P N     +N++ AV ++++
Sbjct: 104 EDGTLKKEITDFCRETIYVPTNGC---MNLAAAVNVIMY 139


>gi|320335450|ref|YP_004172161.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
           21211]
 gi|319756739|gb|ADV68496.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
           21211]
          Length = 149

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 23/146 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           +L  P+   N+G VAR         L L+ P      ++    +      +  V +    
Sbjct: 5   VLYTPEKAGNVGNVARTCAVLG-AHLHLIRPYGFHLQDREFRRAV--MDYLSGVTLHEHA 61

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              + + ++     + A + R              A  ++      + + ++FG E  GL
Sbjct: 62  SWTHFQASLPAGAHVTAFSTR--------------ATHIHTTAPVSRGMYLLFGPESRGL 107

Query: 133 TNEEIALSNAIISFPVNPLFPSLNIS 158
            +  ++   A    P      SLN+S
Sbjct: 108 PDWLLSGLQAA-RIPQPAGGRSLNLS 132


>gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018]
 gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
 gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018]
 gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
          Length = 229

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 24/175 (13%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            YAP  +  A   +++L       NIG +AR  ++  +  +   N +    S   R+S+ 
Sbjct: 72  DYAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIKTINNSGIVRTSAG 131

Query: 63  NADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RI 115
               +       S  + S L +A      I AT                  + L +  +I
Sbjct: 132 ALLDLPFCIHPRSADLASELIDA--GFTLIGAT---------------MDGVDLKKYGKI 174

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                V +  G E  G++ +     +  +S  +   F SLN+S A  ++++    
Sbjct: 175 EKSDKVALFLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIYNLKR 229


>gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
 gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
          Length = 307

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G + R++  F    + +   R    +  A  SSA         RV
Sbjct: 156 PLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVARV 215

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +NL  A+          A  +     V    +    + E       V I+ G E  GL+
Sbjct: 216 -TNLTRALE---------AYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 265

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  +  +S P+     SLN   A  ++++E     
Sbjct: 266 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 304


>gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 258

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 19/148 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           Q   N+G + R         + L    V+P     ++K   ++  +   +    +  +LK
Sbjct: 122 QDPGNLGTMIRTADAAGFDAVILGQGCVDPY----NDKVLRATQGSIWHLP--VIHYDLK 175

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            AI  L    AT          +         +   +     V +I G E  G+  + I 
Sbjct: 176 AAIPALQ---AT------KIPVLATALHKDAQIYSDLKLDDKVALIMGNEGAGVAGDLIQ 226

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            ++  +  P+     SLN++ A  ++++
Sbjct: 227 AADHSVYIPMLGQAESLNVAVATGILLF 254


>gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
 gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
          Length = 243

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 21/158 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R       T   L+  R   P                +  V      AI 
Sbjct: 102 EDPHNMGAIIRTAECVGATA-VLIPKRHNAPI---------------NATVAKTSAGAIE 145

Query: 83  DLHFI----YATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +  +     A T +  +     V+                    I+ G E  G++    
Sbjct: 146 QIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVK 205

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              + +++ P+     SLN S A  ++++E +      
Sbjct: 206 EACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243


>gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
           micraerophilus DSM 19965]
 gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
           micraerophilus DSM 19965]
          Length = 272

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           V+       +L         + I+ G E  G++     + + ++  P+     SLN+S A
Sbjct: 200 VVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDFLVRIPMKGKVSSLNVSVA 259

Query: 161 VLLMVWECMENS 172
             L+++E ++  
Sbjct: 260 AALLIYESVKQR 271


>gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister
           microaerophilus UPII 345-E]
 gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister
           microaerophilus UPII 345-E]
          Length = 272

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           V+       +L         + I+ G E  G++     + + ++  P+     SLN+S A
Sbjct: 200 VVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDFLVRIPMKGKVSSLNVSVA 259

Query: 161 VLLMVWECMENS 172
             L+++E ++  
Sbjct: 260 AALLIYESVKQR 271


>gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 316

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 16/175 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   +N   G  +IL +     N+G V R++  F    + +   R    +  A  +SA  
Sbjct: 154 ANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213

Query: 65  DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R   +   +KE   + + +    A         L   E              V
Sbjct: 214 AARLPVARATNITRTVKEFQKNGYQVVGLDA----GGDHTLDTYEGGTD---------PV 260

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ G E  G++       + ++S P+     SLN S A   ++ E       + 
Sbjct: 261 VIVIGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRAAD 315


>gi|213029355|ref|ZP_03343802.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 32

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 20/30 (66%)

Query: 222 LYSIFIRPELMREEVFLLRGIVSTLDKFSR 251
           +  +F R     +E+ +LRGI++++++ ++
Sbjct: 1   MRRLFTRARPESQELNILRGILASIEQQNK 30


>gi|167647515|ref|YP_001685178.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349945|gb|ABZ72680.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 268

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +  V++L+     +N+G + R    F +  + L          KA   S  A   + +  
Sbjct: 120 RAIVLVLMGIANHDNLGGIFRNAAAFGVDGVILDADCCDPFYRKAIRVSIGATLGVPTAW 179

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
                   +A    + A   R+ +     L+P  AA +   R+       ++ G E  GL
Sbjct: 180 --------LAPGEDVVALLERH-DFQALALSP--AADLTLARLDPPARAAVLLGAEGPGL 228

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +   +A +   +  P+   F SLN++    +++    
Sbjct: 229 SPAVMARA-RTVGIPMAGGFDSLNVATTSGIVLHHLR 264


>gi|87302985|ref|ZP_01085789.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
 gi|87282481|gb|EAQ74440.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
          Length = 290

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 20/173 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----IDSV 71
           V+ L   Q   N+G + R      + +L      D +  +  R+S+  A  +    ++  
Sbjct: 133 VLALDRLQDPGNLGTLMRTALAAGVEELWHSEGADPFQPKVLRASAGAALALPCRRLE-- 190

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           ++   L+ A      + A+       +               ++       ++ G E  G
Sbjct: 191 QLLPRLESARTGGVQVVASVVAGGIPYW--------------QLDWTLPTVLLLGNEGAG 236

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           L  E +A S+  ++ P +    SLN++ A   ++ E        +     +Q 
Sbjct: 237 LAPELLAASSHQVTIPHSGAVESLNVAVAAAPLLLERWRQLTGENAGQQPQQP 289


>gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Equus caballus]
          Length = 355

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 22/189 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           IL   Q   N+G V R+ +   + +  + + R+  P +     +SA A  V+D   VFS 
Sbjct: 151 ILEGLQDPRNLGAVLRSAYFLGVDK-VITSRRNSCPLTPVVSKASAGAVEVMD---VFST 206

Query: 77  LKEAIADLHFIYA-----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +A    + A                     E  I         Q   ++ G E  G
Sbjct: 207 --DDLAGFLQVKARQGWLVAGTVGCPGPETSLSSEMPITSCLEFVWDQPTLLVLGNEGSG 264

Query: 132 LTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSEKNVK------ 181
           L+ E  A    +++  P     P   SLN+S A  +++            +  +      
Sbjct: 265 LSQEVQASCQVLLTILPGRQLPPGLESLNVSVATGILLHSICSQRKAFPAEQKRGKLLQD 324

Query: 182 EQNTPATKG 190
            Q  PAT  
Sbjct: 325 PQEPPATSE 333


>gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 272

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 16/163 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRV 73
           V+++   Q   N+G + R+      + + L        + KA  S+  +   +      +
Sbjct: 119 VVVVDGVQDPGNLGTIIRSADAVGASAIVLGRGTVDIYNPKAIRSTMGSLFHLPVIEADL 178

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L +A+     +  T                 A      I       II G E  G +
Sbjct: 179 ADLLPKAVKAGIQVLCT--------------DLKAEKNCYEIDFTIPTWIIVGNEGKGTS 224

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            E   L+   +  P+     SLN++ A  ++++E     +   
Sbjct: 225 REAGELATQSMIIPMKGHAESLNVAMAATVLLFEASRQRMKPG 267


>gi|83591705|ref|YP_425457.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170]
 gi|83574619|gb|ABC21170.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC
           11170]
          Length = 160

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---- 74
           L  P + +N G + R      + ++ L+ P      ++    +      ++   +     
Sbjct: 6   LYQPDIPQNAGTILRLGACLGV-EVDLIEPCGFVLDDRRLRRA--GMDYLERAALVRHSS 62

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            SN    +AD                 +L  + +A    E IF   +V ++ GRE  G+ 
Sbjct: 63  WSNFVSGLAD------------EARLILLTTQASAFH-AETIFQPNDV-LLLGRESAGVP 108

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            E    ++  I  P+ P   SLNI+    L++ E +  +    +
Sbjct: 109 PEVHERADLRIRVPMVPGVRSLNIAVTAALVLGEALRQTASWPQ 152


>gi|53713569|ref|YP_099561.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60681852|ref|YP_211996.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|253565559|ref|ZP_04843014.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265763891|ref|ZP_06092459.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52216434|dbj|BAD49027.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493286|emb|CAH08070.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|251945838|gb|EES86245.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256499|gb|EEZ27845.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163344|emb|CBW22894.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 253

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 27/176 (15%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANAD 65
            ++       + L D Q   N+G + R    F +      +P      + K   ++    
Sbjct: 97  DMEAIRNSLCLALDDIQDPGNLGTIIRLADWFGIEH-IFCSPNTVDVFNPKTIQATMGG- 154

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             I  V+V+     A+ DL                V         + E+  S   + II 
Sbjct: 155 --IARVKVYYT---ALPDLMHSLG--------NVPVYGTLLDGENMYEQPLSKNGI-IIM 200

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIV 174
           G E  G++ E   L N  +  P    +P       SLN++ A  ++  E    + +
Sbjct: 201 GNEGNGISPEIEKLVNRKLYIP---NYPAERETSESLNVAIATAIVCAEFRRQAAL 253


>gi|163801509|ref|ZP_02195408.1| rRNA methylase, putative [Vibrio sp. AND4]
 gi|159174998|gb|EDP59798.1| rRNA methylase, putative [Vibrio sp. AND4]
          Length = 172

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 18/148 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L +P+   N+G V RA           V   +G    +A     +     + + +     
Sbjct: 11  LYNPKDPTNVGAVMRAA---GCYDATQVR-YNGARYNRAVKLRTDTKNTHERIELVE--- 63

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
             + DL      TA+   + K V                 +N   IFG E   L  E + 
Sbjct: 64  --MDDL------TAQLTQDVKVVCVELAVGATALPLFTHPENAVYIFGPEDGSLPQEVVD 115

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            ++ ++  P N     +N++  V ++++
Sbjct: 116 KADHVVYIPTNGC---MNLAATVNVVLY 140


>gi|269963982|ref|ZP_06178289.1| predicted rRNA methylase [Vibrio harveyi 1DA3]
 gi|269831266|gb|EEZ85418.1| predicted rRNA methylase [Vibrio harveyi 1DA3]
          Length = 172

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 35/180 (19%)

Query: 11  SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           + K   II L +P+   N+G V RA           V   +G    +A     +     +
Sbjct: 2   TTKPTAIIGLYNPKSPTNVGAVLRAA---GCYDAAQVR-YNGTRYSRAVKFQTDTQNSQE 57

Query: 70  SVRVF--SNLKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            +++    +L   +AD      +  +   TA                     +    +N 
Sbjct: 58  RIQLVEMEDLTANVADDVEIVCVELVVGATA-------------------LPQFTHPENA 98

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             +FG E   L  E I  ++ ++  P +     +N++  V +++++ M  ++ + + + +
Sbjct: 99  IYVFGPEDGSLPQEMIDKAHHVVYVPTHGC---MNLAATVNVVLYDRMAKTLGTIDDHQQ 155


>gi|71082809|ref|YP_265528.1| rRNA methylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762768|ref|ZP_01264733.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|71061922|gb|AAZ20925.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718570|gb|EAS85220.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 153

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 17/160 (10%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS--VR 72
           P I L +P + +N   + R         L ++ P     S+K           +D   +R
Sbjct: 5   PKIALYEPDIPQNTAAIIRTCACLG-ADLEIIEPCGFLFSDKRFKRVV--MDYMDEKMIR 61

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + +  E              ++ N + +L   ++A    +  F   +  ++FGRE  G+
Sbjct: 62  FYQSSDEFFK-----------SKKNERVILLTTKSADSYTDFKFESNDT-LLFGRESAGV 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +    L    +  P+     SLNI+ +V +++ E +  +
Sbjct: 110 PDHVHNLIKYRLKIPMMDNKRSLNIASSVAIILSENLRQT 149


>gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1]
 gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum
           PYR-GCK]
 gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1]
          Length = 314

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 19/171 (11%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--- 65
            ++A   ++ L +     N+G + R++  F    + L   R    +  A  +SA A    
Sbjct: 159 SDAAPALLVALDNISDPRNLGAIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAART 218

Query: 66  CVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            V  +  +   LK+  AD    +                         + I       ++
Sbjct: 219 PVARATNLNRTLKQ-YADAGLQVVGL--------------DAGGDTTIDEIDGLTPTIVV 263

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            G E  GL+       + I+S P+     SLN S A  +++ E      +S
Sbjct: 264 VGSEGKGLSRLVRENCDRIVSIPMAGPTESLNASVAAGVVLAEIARQRRLS 314


>gi|308497766|ref|XP_003111070.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
 gi|308242950|gb|EFO86902.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
          Length = 698

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 24/152 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
             N+G + R+ W F    + LV    P+   PS     SS  A   +  V+ F N  E  
Sbjct: 140 PGNLGAIGRSAWYFGADGICLVKGRGPKTITPS--MIKSSCGALEHLP-VQQFENFHEFR 196

Query: 82  ADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGLTNE 135
             +      + AT           LA ++A I +         + VGI+ G E  G++ E
Sbjct: 197 DSIKLNSGELVATC--------DPLAAEKAGITVKSLNEWKPKKTVGIVLGDEGVGISKE 248

Query: 136 EIALSNAIISF-PVNPLFP---SLNISQAVLL 163
            +   + +IS  P         SLN+S    +
Sbjct: 249 ILNFCDTVISIAPTREHQSSVTSLNVSVVAAV 280


>gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           6_1_27]
 gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           6_1_27]
          Length = 243

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 21/158 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R       T   L+  R   P                +  V      AI 
Sbjct: 102 EDPHNMGAIIRTAECVGATA-VLIPKRHNAPI---------------NATVAKTSAGAIE 145

Query: 83  DLHFI----YATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +  +     A T +  +     V+                    I+ G E  G++    
Sbjct: 146 QIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVK 205

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              + +++ P+     SLN S A  ++++E +      
Sbjct: 206 EACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243


>gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 316

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 16/175 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   +N   G  +IL +     N+G V R++  F    + +   R    +  A  +SA  
Sbjct: 154 ANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213

Query: 65  DCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R   +   +KE   + + +    A         L   E              V
Sbjct: 214 AARLPVARATNITRTVKEFQKNGYQVVGLDA----GGDHTLDTYEGGTD---------PV 260

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ G E  G++       + ++S P+     SLN S A   ++ E      V+ 
Sbjct: 261 VIVIGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRVAD 315


>gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 281

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           L P   A+ L E   +G+ V ++ G E  GLT   +  ++     P+ P   SLN++ A 
Sbjct: 211 LTPNPEAVTLAE-AMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVATAA 269

Query: 162 LLMVWE 167
            +  +E
Sbjct: 270 AMAFYE 275


>gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162]
          Length = 247

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             +G++ G E  G++       +   S P+     SLN S A  ++ +E +   +V S K
Sbjct: 188 GPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRLVKSSK 247


>gi|256819298|ref|YP_003140577.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580881|gb|ACU92016.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 243

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 27/165 (16%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71
           +G ++ L + Q   N+G + R    F +  L + N +     + K   ++  +   +   
Sbjct: 96  EGVILALDNVQDPGNLGTLIRLCDWFGIETL-ICNSQTVDCYNPKVVQATMGSLTRV--A 152

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +L   +A                  + A       L    F  ++  +I G E  G
Sbjct: 153 VHYVDLAGFLATCAL-------------PLYAMDLDGENLYTTEFP-EDCVLILGNEANG 198

Query: 132 LTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECME 170
           ++ E  AL++ II+ P    F       SLN++ A  ++V +  +
Sbjct: 199 ISPEVRALADGIITIP---RFGKLQQTESLNVAMAGAIVVSQVRK 240


>gi|212716042|ref|ZP_03324170.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661409|gb|EEB21984.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
           16992]
          Length = 288

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 15/151 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76
           N+G + R+    ++    LV P  G P   +A   S      I   R+         F+ 
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDRHYWPFTG 195

Query: 77  LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++E + DL F   A    + +     L  +       +       + +IFG E  GL++ 
Sbjct: 196 MQE-LHDLGFTTVAMALEDDSISLEELVRRLNNADDEKDHID--KLALIFGTEGDGLSHH 252

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I+ ++  +  P++    SLN++ +  +  +
Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|189467568|ref|ZP_03016353.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
           17393]
 gi|189435832|gb|EDV04817.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
           17393]
          Length = 267

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 3   PYAPQLQNS---AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           P    ++++   A+  V+I  +VD     NIG + R+     +  + L        + +A
Sbjct: 107 PAPRTVEDTCRDARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRA 163

Query: 58  RSSSANADCVIDSVRVFSNLKE-AIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERI 115
              S  +  ++    +   L + A         A T  + +    VL             
Sbjct: 164 VRVSMGSVFLVPWTWLDGTLSDLARHGFRTAAMALTDNSISIADPVLT------------ 211

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            S   + I+ G E  GL  + IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 212 -SEPRLAIVMGTEGEGLPPDTIAAADYVVRIPMAHGVDSLNVAVAAAVAFWQLR 264


>gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
 gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
          Length = 272

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 30/164 (18%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+     +T   ++ P    P                + +V  +   AI 
Sbjct: 129 QDPGNMGTIFRSAEAAGITG-VIIGPGSCDPY---------------NPKVVRSTMGAIF 172

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---------NVGIIFGRERWGLT 133
            + F+     ++ +   ++ A K   +++      G+          +  + G E  GL+
Sbjct: 173 RVPFV-----QSDDLIYTIDALKRKGVLIYGAHLDGEELYDTEFPDKIAFLIGNEGNGLS 227

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                 ++ ++  P+     SLN + +  L+ +E M     + +
Sbjct: 228 KAVSDTADRLLRIPMEGKVESLNAAISATLLSYEAMRQRRSARQ 271


>gi|78776544|ref|YP_392859.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
 gi|78497084|gb|ABB43624.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
          Length = 249

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 13/162 (8%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A +++N  K  ++ L   Q  +N+GM+ R+     +  + L        S     +SA  
Sbjct: 99  ANEIKNLKKFKLLALDGIQNPQNLGMIIRSCAAGYIDGVILPKKNSAKISPLVIKASAGT 158

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +  +   + L E + +L          ++    +L+    A      +        +
Sbjct: 159 LFKLP-IYYCNTLDEVLKEL----------KDTKIYLLS--SHAKKSIYDLRQEDKSIFV 205

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            G E  G++ E  AL N  I+ P+N    SLN++    L+ +
Sbjct: 206 LGNESDGVSREIEALCNDSINIPMNRDVESLNVAVTASLIAF 247


>gi|315224741|ref|ZP_07866564.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314945369|gb|EFS97395.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 248

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 27/173 (15%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71
           +G ++ L + Q   N+G + R    F +  L + N +     + K   ++  +   +   
Sbjct: 96  EGVILALDNVQDPGNLGTLIRLCDWFGIETL-ICNSQTVDCYNPKVVQATMGSLTRV--A 152

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             + +L   +A                  + A       L    F  ++  +I G E  G
Sbjct: 153 VHYVDLAGFLATCAL-------------PLYAMDLDGENLYTTEFP-EDCVLILGNEANG 198

Query: 132 LTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECMENSIVSSEK 178
           ++ E  AL++ II+ P    F       SLN++ A  ++V +  + +     K
Sbjct: 199 ISPEVRALADGIITIP---RFGKLQQTESLNVAMAGAIVVSQVRKLANEKMRK 248


>gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           violaceusniger Tu 4113]
 gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           violaceusniger Tu 4113]
          Length = 316

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 16/172 (9%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            A          ++ L       N+G V R++  F    + +   R    +  A  +SA 
Sbjct: 157 SAAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216

Query: 64  --ADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             A   +      +   EA       +    A             +  + L +       
Sbjct: 217 TAARTPVARATNLTRTLEAYQKAGLTVVGLAA-------------DGEVELQDVEALDGP 263

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + I+ G E  GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 264 LVIVVGSEGKGLSRLVGETCDLRVRIPMPGGAESLNAGVAAGVVLYEAARRR 315


>gi|109019959|ref|XP_001102931.1| PREDICTED: probable methyltransferase TARBP1-like [Macaca mulatta]
          Length = 1623

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 23/164 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V+V        L++
Sbjct: 1476 PTNLGGLCRTCEVFGASALV-VGSLQCISDKQFQHLSVSAEQWLPLVQVKPPHLIDYLQQ 1534

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + + I     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 1535 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1579

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               +  +  P   +  SLN+  +  L++WE     ++S      
Sbjct: 1580 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDAKP 1623


>gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG]
 gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF]
          Length = 314

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G + R++  F    + +   R    +  A  SSA         RV
Sbjct: 163 PLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVARV 222

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +NL  A+          A  +     V    +    + E       V I+ G E  GL+
Sbjct: 223 -TNLTRALE---------AYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLS 272

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  +  +S P+     SLN   A  ++++E     
Sbjct: 273 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 311


>gi|183602131|ref|ZP_02963499.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191363|ref|YP_002968757.1| hypothetical protein Balac_1346 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196769|ref|YP_002970324.1| hypothetical protein Balat_1346 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218624|gb|EDT89267.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249755|gb|ACS46695.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251323|gb|ACS48262.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177489|gb|ADC84735.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295794356|gb|ADG33891.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 223

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 25/186 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M       +     P +    P++  N G   R       T L LV P      +     
Sbjct: 55  MMTAREAAETPTTTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRR 113

Query: 61  SANADCVIDSVRVF--SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +       D   V    N ++ +  +    I A TA               A  L   + 
Sbjct: 114 A--GLDYHDMAHVVLHPNFEDLVESMPNSRIIAFTA--------------HATKLYTEVE 157

Query: 117 SGQNVGIIFGRERWGLTN--EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 ++FG E   + +  + +A  +    +  P+ P   SLN++    + ++E     
Sbjct: 158 YKPTDILLFGPEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 217

Query: 173 IVSSEK 178
                +
Sbjct: 218 GFDGGQ 223


>gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 239

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 25  GENIGMVARAMWNFN-LTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
            +N+G + R       +  L    PR+     ++    +S+ A   ++  +V +NL   +
Sbjct: 103 PQNVGNLLRTCEVLGGVGALI---PRERSSPMNQTVVKASSGAIFHLEISKV-ANLGRVL 158

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            +   +              +   E        +       ++ G E  G++   + +S+
Sbjct: 159 KEFKEMGG-----------WVFAVEKGGKDIRELEIVLPCALVLGSEDKGVSKSLLEVSD 207

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            ++S P+     SLN+  A  + +WE + 
Sbjct: 208 EVLSIPMKGKTTSLNVGSAGAIAMWEAVR 236


>gi|325293605|ref|YP_004279469.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325061458|gb|ADY65149.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 157

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 17/168 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---A 64
           + +      I L  P +  N G + R      L  + ++ P     S++    +     A
Sbjct: 1   MSDIRPEIRIALYQPDIPGNTGTILRLAACLGLG-VDIIEPAGFDISDRNLKRAGMDYIA 59

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +     +   +E         ATT R       ++     A +   +I    +  ++
Sbjct: 60  AAALTRHVSWDRFEEWR-------ATTGRR------LVLASTKAALPYTKIAYRHDDILL 106

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           FGRE  G+ +     +   I  P+     S+N++ +  ++  E +  +
Sbjct: 107 FGRESAGVPDHVHEKAQERIIIPMVEGQRSINVAMSAAMITGEALRQT 154


>gi|325110483|ref|YP_004271551.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
 gi|324970751|gb|ADY61529.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
          Length = 270

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 28/188 (14%)

Query: 1   MTPYAPQLQNSAKGP--VIILVDP--QLGENIGMVARAMWNFNLTQLRL----VNP---R 49
           + P  P L     GP    +L  P     +N+G + R    F    + L    V+P   R
Sbjct: 98  LKPDNPSLSALLNGPPTAPVLCCPHLTGPDNLGSLTRLAAGFGAAGILLGEGSVDPYLRR 157

Query: 50  DGWPS-EKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
               S           A+ V+  ++      E   +   +    A +    + +      
Sbjct: 158 CVRVSMGTIFQMPIRTAESVLAELQQLKT--E--HNCDLL---AAEDSEQSRPLYE---- 206

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                     G+   ++ G E  GL    + L +A+   P+     SLNI+ A  + ++E
Sbjct: 207 ----LPAATPGKRRVLLLGNEADGLGQPFLKLVDAVYDIPMADGVDSLNIANAAGIFLYE 262

Query: 168 CMENSIVS 175
                   
Sbjct: 263 LTSERPRP 270


>gi|154495177|ref|ZP_02034182.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
           43184]
 gi|154085727|gb|EDN84772.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
           43184]
          Length = 269

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 20/162 (12%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  V+I  +VD     NIG + R+     +  + L        + +A   S     ++ 
Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175

Query: 70  SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +  +L +   +       A T  + +    VL              +   + I+ G 
Sbjct: 176 WTWMDGSLGDLGRLGFRTAAMALTDNSISIDNPVL-------------ATEPRLAIVMGT 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           E  GL+ E IA ++ ++  P++    SLN++ A  +  W+  
Sbjct: 223 EGDGLSQETIAAADYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264


>gi|291278680|ref|YP_003495515.1| tRNA (guanine-N(1)-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
 gi|290753382|dbj|BAI79759.1| tRNA (guanine-N(1)-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
          Length = 421

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 28/154 (18%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPS-----------------EKARSSSANADCVIDS-VR 72
           ++R+   F +    ++NP                        + R  +     V +S + 
Sbjct: 271 ISRSCKTFGVRNYYVINPLPAQREIANRVLKHWREGYGATYNENRKEAFGVTKVKESLIE 330

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V   +++A  +   +  TTAR R++         +   L +  F  + V ++FG   WG 
Sbjct: 331 VIDEIEKAEGEKPLLVGTTARKRDDA-------VSFDELKKLTFE-KPVLLLFGT-GWGF 381

Query: 133 TNEEIALSNAII-SFPVNPLFPSLNISQAVLLMV 165
           +++ + + + I+        F  L++  AV +++
Sbjct: 382 SDDMLEVCDYILERIKGYDEFNHLSVRSAVAIIL 415


>gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 248

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 55/153 (35%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL + +   N+G + R      +  + +   R    +     +S  A   +   RV    
Sbjct: 103 ILDELEDPHNLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLV 162

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +E      +++ T  +  +  +                 +   V ++ G E  G+++
Sbjct: 163 QTAQELKDRGVWLFGTDMKGTDYRRW---------------NAKGAVALVIGNEGKGISS 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 + +++ P+     SLN S A  L++++
Sbjct: 208 LLKKNCDEMLTIPMIGHVQSLNASVAASLLIYQ 240


>gi|73966850|ref|XP_852880.1| PREDICTED: similar to Y45F3A.9 [Canis familiaris]
          Length = 346

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 23/196 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N+G V R+     + +  + + R+  P +     +SA A  V+D   VFS 
Sbjct: 151 VLERLQDPRNLGAVLRSAHFLGVDK-VITSGRNSCPLTPVVSKASAGAMEVMD---VFST 206

Query: 77  -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                  +A A   ++ A T       +  ++  E  I         Q   ++ G E  G
Sbjct: 207 DDLAGFLQAKARQGWLVAGTV---GCPRPEMS-SEIPITSCLEFLWDQPTLLVLGNEGSG 262

Query: 132 LTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENS-----IVSSEKNVKE 182
           L+    A    +++  P     P   SLN+S A  +++                E  +++
Sbjct: 263 LSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICCQRKDFPMGRKREHLLQD 322

Query: 183 QNTPATKGELLSFLDY 198
              P+   E      +
Sbjct: 323 PREPSATSEGPGLAQH 338


>gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
          Length = 234

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L    K  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y                   A +          
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EASINYNEENYSNK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 VILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 368

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 15/154 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R+  +F +  + L +          R++   A+ V  ID+      L++   
Sbjct: 228 PHNLGGIMRSCAHFGIQGVILQDAGMLESGAAIRTAEGGAEHVKAIDADGFTPTLEKFRQ 287

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I  T++                     ++   + + ++ G+E  GL++      + 
Sbjct: 288 AGYTIVTTSS-------------HKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDM 334

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +         SLN+S A  +M+ +    + V S
Sbjct: 335 SLYIGGTGKVESLNVSVATGIMLSQWWSQNKVKS 368


>gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 244

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 26/172 (15%)

Query: 10  NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADC 66
            S + P+ IL+D      N G + R         + +  P+ G    +  A  +SA A  
Sbjct: 91  ESGETPLFILLDQLSDVRNFGAIIRTAECTGAHGVII--PKKGGAPLNGVAVKTSAGAAF 148

Query: 67  VIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            +   +V  ++K+AI     + +  + AT   +   +                +   +  
Sbjct: 149 SMPIAKV-DHIKDAIYYLQGSGIQVVAATEKTDNTLY---------------DVDFKEPT 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            I+ GRE  G++   + + +     P+     SLN+S A    ++E +   +
Sbjct: 193 AIVMGREDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVACGAFLYEAVRQRL 244


>gi|195496211|ref|XP_002095597.1| GE22485 [Drosophila yakuba]
 gi|194181698|gb|EDW95309.1| GE22485 [Drosophila yakuba]
          Length = 407

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
              +L +      ++  + +   N+G + R       +Q+ + +        KA      
Sbjct: 225 EQQRLGSEPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCG 284

Query: 64  A--DCVIDSVRVFSNLK-----EAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERI 115
                 I     +  L      EA  D H   A +  R R N +++       +      
Sbjct: 285 GQFRVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGL------ 338

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECM 169
             G +  +I G E  G++ +     N        I  P+     SLN++ A+ L+++E  
Sbjct: 339 --GAHNLLIIGGESHGVSEDAYRFLNLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELR 396

Query: 170 E 170
            
Sbjct: 397 R 397


>gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 314

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G + R++  F    + +   R    +  A  SSA         RV
Sbjct: 163 PLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVARV 222

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +NL  A+          A  +     V    +    + E       V I+ G E  GL+
Sbjct: 223 -TNLTRALE---------AYKKAGITVVGLAADGEHAVGELAALDGPVVIVIGSEGKGLS 272

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  +  +S P+     SLN   A  ++++E     
Sbjct: 273 RLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRR 311


>gi|15606763|ref|NP_214143.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
 gi|3915169|sp|O67577|TRMH_AQUAE RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|75765771|pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING
           Enzyme
 gi|2983982|gb|AAC07528.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
          Length = 211

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 30/67 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +   ++ G E  G++ E + +++  I  P+  +  SLN+S A  ++++E           
Sbjct: 119 KPTVLVVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQREEKGMY 178

Query: 179 NVKEQNT 185
           +    + 
Sbjct: 179 SRPSLSE 185


>gi|90411824|ref|ZP_01219833.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90327386|gb|EAS43750.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 157

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +  +     R       A+    +   VI+++ +  
Sbjct: 10  CIGLFNPKTPENVGSVLRASGCYGVNSVFYTGTRYDL----AKQFCTDTKNVINNIPLIG 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +KE + D+  +  T           +   E A  L E     +    IFG E   L  E
Sbjct: 66  -VKE-LKDIIPVGCT--------PVAVDLIEGAKPLPEYKHP-ERAFYIFGPEDGTLKKE 114

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                   I  P       +N++ AV ++++
Sbjct: 115 ITDFCRDTIYVPTKGC---MNLAAAVNVILY 142


>gi|293343446|ref|XP_002725485.1| PREDICTED: rCG50916-like [Rattus norvegicus]
          Length = 1500

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 23/163 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F    L  V         + +  S +A+  +  V V        L++
Sbjct: 1353 PTNLGGLCRTCEVFGAAVLV-VGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLVDYLQQ 1411

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              A+ + +     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 1412 KKAEGYTVIGVEQTAQSSDLAQ-YRFP--------------EKSLLLLGNEREGIPVNLI 1456

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
               +  +  P   +  SLN+  +  L++WE     ++      
Sbjct: 1457 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAGPP 1499


>gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 225

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 14/153 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G + R+     +  + L        ++     S+     I  + V S
Sbjct: 83  ILVLDHIQDNHNLGAIIRSANAAGIKHIILPKDNCAKINDSVIRISSGGFVGIKFILVNS 142

Query: 76  NLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            L   E +   +F    +A ++                 ++I   Q   I+ G E  G++
Sbjct: 143 LLATFEKLKKHNFWIYASALSKTAKP------------LDQIVFNQPSAIVLGSEAKGIS 190

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              +  S+ I   P+     SLN+S A  ++++
Sbjct: 191 KSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223


>gi|294673755|ref|YP_003574371.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294473842|gb|ADE83231.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 268

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 16/146 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSNLKEAIADL 84
           NIG + R+     +  + L        + +A   S  +  ++       +  L+  +   
Sbjct: 137 NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDSYDTLRS-LGYQ 195

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
               A T ++ +    VL                + +  I G E  GL  + I  ++  +
Sbjct: 196 TAAMALTDKSISLDDPVL-------------KQQERLAFIMGTEGDGLPQQTITNADFTV 242

Query: 145 SFPVNPLFPSLNISQAVLLMVWECME 170
             P++    SLN++ A  +  WE  +
Sbjct: 243 RIPMSHQVDSLNVAAAAAVAFWELRK 268


>gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 249

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 70  SVRVFSNLKEAIADLHFIYATT--AR-NRNNFKSVLAPKEAAIVLNERIFSG---QNVGI 123
           +  V      A AD   + A T  AR  R+  K  +     A      ++S     NVG+
Sbjct: 139 NATVRKTSAGA-ADRIPVVAVTNLARCLRDLQKQGVWLYGLAGEAEASLYSVDLRGNVGL 197

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           + G E  GL        + ++  P+     SLN+S A  + ++E +   + +
Sbjct: 198 VLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLFEAVRQRLGA 249


>gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
 gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
 gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
           SSC/2]
          Length = 246

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++G++ G E  G++       + I S P+     SLN S A  ++ +E +   +
Sbjct: 190 GSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFEVVRQRL 244


>gi|78042655|ref|YP_360402.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 258

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + RA + F ++ + L+ P     + K   +SA       +   F  L
Sbjct: 113 VLDGLQDPGNVGTLLRAAFGFGVSGVILLPPAVDIYNPKVIRASAG------TAFKFPVL 166

Query: 78  K-EA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + EA  + D+          +NN    LA  E  I L    F      +  G E  G++ 
Sbjct: 167 RMEADELKDIIL--------KNNIPLFLAESEGGIPLTAIDFP-AKFFVAVGNEGQGIST 217

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +L +  IS P+     SLN + A  ++++E  +N 
Sbjct: 218 TLKSLPHQKISIPMPGKIESLNAALAGGIIIYEWAKNR 255


>gi|327538381|gb|EGF25053.1| rRNA methylase [Rhodopirellula baltica WH47]
          Length = 302

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 13/183 (7%)

Query: 2   TPYAPQLQNSAKGP----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           +P    L+     P     + L+     EN+G + R+     +    L+ P+   P  + 
Sbjct: 128 SPTIEPLEKFRDSPQSSLALALMGLSDPENVGSLLRSAAALGVRD-ILLGPQTISPMTRR 186

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIF 116
               + A         F N    + DL     A+ A   ++    L    +AI    RI 
Sbjct: 187 VIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLLDDTAIPLIDLSSAIQSKRRI- 245

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 ++ G E  GL  E    +    + P+     SLN+  A  + ++E         
Sbjct: 246 ------LMVGNEANGLPPEIAEAATHRSTLPMRNDTDSLNVGVASAIFLYELTRLRDADH 299

Query: 177 EKN 179
             +
Sbjct: 300 AND 302


>gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 308

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 19/160 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR----SSSANADC 66
           + +G V++L       N+G + R+   F +  +          S +A      +++ A  
Sbjct: 153 TPEGMVLVLDQITDPHNVGAILRSAAAFAVKAIV----TTARHSPEATGVLAKAASGALE 208

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++  V    NL  A+         TA N   F++V    E +  L+      + + ++ G
Sbjct: 209 LVP-VVTVQNLARAL---------TALNERGFQTVGLDSEGSEDLSNVALR-EPLALVLG 257

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E  GL        + +    +     SLN+S A  L ++
Sbjct: 258 AEGKGLRQLTRETCSVVARLDMPGEIKSLNVSNAAALSLY 297


>gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 313

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 11/164 (6%)

Query: 10  NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++ + P+I+ L       N+G V R++  F      +V      P  +A   +A A    
Sbjct: 159 DAGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKT- 210

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            S    +    A A  +   A  A  +     V    +    + +       V I+ G E
Sbjct: 211 -SAGTAARTPVARA-TNLTRALEAYKKAGITVVGLAADGEAAVGDLKALDGPVVIVVGSE 268

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 269 GKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRR 312


>gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
           formatexigens DSM 14469]
 gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
           formatexigens DSM 14469]
          Length = 245

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 20/160 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L   +   N+G + R         + +   R    +     +SA A       +V + 
Sbjct: 101 ILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNL 160

Query: 76  --NLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++E     + F+ A                     + +    G  +G++ G E  G+
Sbjct: 161 AKTIEELKQKGIWFVCA---------------DMNGTPMYDLDLKG-PIGLVIGSEGEGV 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +       +   S P+     SLN S A  +M +E +   
Sbjct: 205 SRLVKEKCDFTASIPMKGDIDSLNASVAAGVMAYEIVRQR 244


>gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
 gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
          Length = 268

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           L P   A+ L E   +G+ V ++ G E  GLT   +  ++     P+ P   SLN++ A 
Sbjct: 198 LTPNPEAVTLAE-AMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVATAA 256

Query: 162 LLMVWE 167
            +  +E
Sbjct: 257 AMAFYE 262


>gi|197106334|ref|YP_002131711.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196479754|gb|ACG79282.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 154

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---- 74
           L  P + +N+G   R      +  L ++ P     S++A + +  A        V     
Sbjct: 5   LFQPDIPQNLGAAVRLAACLGVP-LDVIEPCGFPLSDRAVARA--AMDYAARADVVRHAG 61

Query: 75  -SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             + + A      +  TT               AA    +  F   +V ++FGRE  G+ 
Sbjct: 62  WGDFRAASQG-RLVLFTT--------------RAAQPFQDFDFRPGDV-LLFGRESAGVP 105

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +E  A ++A +  P+     SLN+  A  + + E +  +         E
Sbjct: 106 DEVHAAADARLFIPLVAGARSLNVVTAAAMALSEALRQTGGFPTPAAAE 154


>gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 252

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++++ T               + A V      +     ++ G E  G+       
Sbjct: 169 LKKRGYWVFGT---------------DMAGVDYREWNAKGKAVLVIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I+ P+     SLN S A  +++++   + 
Sbjct: 214 MDQTITLPMVGHVQSLNASVATGVLLYQAYNSR 246


>gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 248

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 17/154 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   Q   N+G + R      L  L +++P    P +     ++    V     +  
Sbjct: 109 VLLLDRIQDPGNLGTLIRTADAAAL-DLIVMSPGSADPFQDKVLRASQGS-VFHLPIISQ 166

Query: 76  NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++KE + D    +Y T               + AI  NE + S +  G++ G E  G+  
Sbjct: 167 DIKEFVQDFDGPVYGTA-------------LDNAINFNE-VESQEKFGLLLGNEGQGVDP 212

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           E +  +   ++ P+     SLN++ A  +++++ 
Sbjct: 213 ELLEYTTQRLTIPMYGEAESLNVAIAGSILIYKL 246


>gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 247

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSV 71
           +L       N+G   R         + +   R    +      +  A  V+      +  
Sbjct: 100 VLDGVTDPHNLGACLRNADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLA 159

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           R    L+E    + +   T                 A     +      + I+ G E  G
Sbjct: 160 RTMRTLQE--QGI-WFVGTAG--------------EATHDIYQAKLTGPLAIVMGAEGGG 202

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +        + +I  P+     SLN+S A  + ++E +   I + 
Sbjct: 203 MRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVRQRIAAK 247


>gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 243

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 21/158 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R       T   L+  R   P                +  V      AI 
Sbjct: 102 EDPHNMGAIIRTAECVGATA-VLIPKRHNAPI---------------NATVAKTSAGAIE 145

Query: 83  DLHFI----YATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +  +     A T +  +     V+                    I+ G E  G++    
Sbjct: 146 QIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVK 205

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              + +++ P+     SLN S A  ++++E +      
Sbjct: 206 EACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243


>gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 257

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 14/167 (8%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P       G V++L D Q   N+G + R     ++ ++ L        S KA  +   A 
Sbjct: 104 PVPAPYHGGSVLLLDDVQDPGNLGTLLRTAAAADVRRVYLSAGCADVWSGKALRAGMGAQ 163

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +D     + L   +       A + R       V+   E ++ L     +G +V  +F
Sbjct: 164 FALDLHER-AVLPAVLQ------AFSGRK------VVTHLEGSVPLWSLDLTG-DVAFVF 209

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++   +  +   +  P+  +  SLN++ A  + ++E +   
Sbjct: 210 GNEGAGVSAAVLDCAPDRVIIPMPGVAESLNVAAAAAICLFERVRQR 256


>gi|297183287|gb|ADI19425.1| predicted rRNA methylase (spou class) [uncultured Pseudomonadales
           bacterium HF0500_12O04]
          Length = 156

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 56/154 (36%), Gaps = 24/154 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
            I L +P+  EN+G V RA           V      G   E+AR      D + D+ +V
Sbjct: 8   CIGLYNPKSPENVGSVMRAA---GCYN---VASVFYTGKRYERAR------DFITDTKKV 55

Query: 74  FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++    I DL  I              +   E A  L E     + +  IFG E   L
Sbjct: 56  HQDIPLIGIDDLKKII-----PLGCIPVAVEMVEGARPLPEYTHPDRAI-YIFGPEDGSL 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             + +     +I  P       +N++  V ++++
Sbjct: 110 GKDVLEWCEDVIYIPTTGC---MNLAATVNVVLY 140


>gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 238

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 19/169 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++   ++  +++L + Q   N G + R+   F +  + +        +E    +S  A 
Sbjct: 80  ERMAGRSQSILLMLDEIQDPRNFGALIRSAEVFGVDGILIPERNSVRINETVVKTSTGAI 139

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +  ++V +NL  AI  L     ++Y                   A +  +     + V
Sbjct: 140 EYVPIIKV-TNLSNAIEKLKKIDYWVYGAAG--------------EAELSCQEEQYPKKV 184

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +I G E  GL  +     + +I   +     SLN+S A  +++ E  +
Sbjct: 185 VLILGNEGTGLRKKVREHCDKLIKIQMRGKINSLNVSVAGGILLSEIAK 233


>gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001]
 gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001]
          Length = 260

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + +   R    +      S  A   +   RV +NL + I 
Sbjct: 119 EDPHNLGSILRTADASGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 177

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +I+ T    ++        ++          +  +  I+ G E  G++     
Sbjct: 178 ILKDRGMWIFGTAMDGQDY-------RQW--------DAKGSTAIVIGNEGKGISPGIAK 222

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +A I+ P+     SLN S A  +++++   + 
Sbjct: 223 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASR 256


>gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
 gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
          Length = 289

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%)

Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +++A + +  +     + +I G E  GL  E IA  +  +  P++    SLN++ A  + 
Sbjct: 223 EDSASIDDPELMKEDKLAVILGTEGDGLAPETIADCDYTVMIPMSHGVDSLNVAAASAVA 282

Query: 165 VWECMEN 171
            W+  + 
Sbjct: 283 FWQLGKR 289


>gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 249

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 25/168 (14%)

Query: 6   PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSAN 63
            +   S KG   +L+D  Q   N+G + R      +    +V        + K   S+  
Sbjct: 96  EKTPASVKGSTFLLIDAVQDPGNLGTMIRTADAAGI-DAVIVGKGSADIYNPKVLRSAQG 154

Query: 64  ADCVIDSVR-----VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +   +  +R         L+E   ++  +Y T   N + +K                   
Sbjct: 155 SHFHLPIIRGSLNEWMDRLEE--EEIP-VYGTALENGSPYK--------------ETHPA 197

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               ++ G E  G++ E +A ++  +  P+     SLN++ A  ++++
Sbjct: 198 GRFALLVGNEGSGVSPELLARTDKNLYIPIYGKSESLNVAVAAGILLY 245


>gi|229818127|ref|ZP_04448409.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM
           20098]
 gi|229784731|gb|EEP20845.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM
           20098]
          Length = 213

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 25/159 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    N +
Sbjct: 65  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 121

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
           + +  +    I A TA               A  L   I       ++FG E   + +  
Sbjct: 122 DLVESMPDSRIIAFTA--------------HATKLYTDIEYKPTDILLFGPEPGNIPDPM 167

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +A  +    +  P+ P   SLN++    + ++E    
Sbjct: 168 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 206


>gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
           E-37]
 gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
           E-37]
          Length = 274

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 20/159 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRV 73
           ++L       N+G + R+   F    +          +     +++ A      +    +
Sbjct: 129 VLLDRVTDPHNVGAILRSAEVFGAQAVIGTRHHAAPETGALAKTASGALERQPYLRERNL 188

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERW 130
              +  A+  + +I              L     A    E    G+    + ++ G E  
Sbjct: 189 ADTIT-ALQGIGYIV-------------LGLDGEAETTIEDAVEGKRDRPIALVLGAEGP 234

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           GL  +     +A++  P    F SLN+S A  + ++   
Sbjct: 235 GLRPKTRETVDALVKIPFAREFGSLNVSNAAAVALYAVR 273


>gi|317970561|ref|ZP_07971951.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CB0205]
          Length = 267

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 20/180 (11%)

Query: 1   MTPYAPQLQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           +  +  +    A+G    V+ L   Q   N+G + R      +  L L    D    +  
Sbjct: 93  VATFKREALPKAQGIGAFVLALDQLQDPGNLGTLMRTALAAGVNDLWLGGGADPCQPKVL 152

Query: 58  RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           R+S+  A  +      D   + + L EA A  H + AT          ++ P  A     
Sbjct: 153 RASAGAALALPHWRDPDRTGLVARLAEAAAAGHQLVAT----------LVDPDRAIPYW- 201

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   +   ++ G E  GL  E  AL++  ++ P +P   SLN+  A   ++ E     
Sbjct: 202 -ELDWTRPTVLLLGNEGAGLHPELAALASHRVTIPHSPAVESLNVGVAAAPLLLERWRQQ 260


>gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 247

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 52/192 (27%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             ++      +++L   Q   N+G + R                         S +  AD
Sbjct: 88  RAIEEQRTATIVLLDQIQDPHNLGAIIRT------------------------SVAVGAD 123

Query: 66  CVI----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117
            +     +S  +  ++ +  A L F              ++   +   +L E+ F     
Sbjct: 124 AIAITSSNSAEITPSVVKVSAGLAFKI--------PIIKIINMAQFEEILKEKGFWIYAS 175

Query: 118 ------------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                        +   I+FG E  G+       S+ +IS P+     SLN++ +  +++
Sbjct: 176 DMEGIPYYENEYSEKSAIVFGNEGKGVRRLVKERSDRLISIPMEDTVDSLNVAASAAIIL 235

Query: 166 WECMENSIVSSE 177
           ++      +  E
Sbjct: 236 FDRRRQLALGGE 247


>gi|312984341|ref|ZP_07791683.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
 gi|310894266|gb|EFQ43346.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
          Length = 255

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 17/153 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P      + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +L + I D            +    V A     +A  L +       + +I G E  G++
Sbjct: 171 DLADVITDFQ----------DATIPVYASLLDRSAKQLPD-FEKVPQLALIIGNEAHGIS 219

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +L++  +  P+     SLN + A  +M++
Sbjct: 220 KTIASLADEKLYIPIKGQAESLNAAVAAGIMIY 252


>gi|167522701|ref|XP_001745688.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776037|gb|EDQ89659.1| predicted protein [Monosiga brevicollis MX1]
          Length = 549

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 15/163 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVF 74
           ++V  Q   N+G + R    F    + + +      +     +SA    A   +    V 
Sbjct: 393 VVVAAQDPHNVGSIVRTALAFGADAICVWDGAAQPLTAATIKASAGHVFAGRFLSPTEV- 451

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+ A +    +  +T           AP   +    E +       ++ G E  G+  
Sbjct: 452 --LRAARSTASEVAPSTL---WTAAEAHAPSSWSHRQLEDVAWPHRRVLVLGHETRGVPR 506

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV-----WECMENS 172
           +        +   ++P   SL+++ A  ++      +EC + S
Sbjct: 507 DLQPFCQP-VHIAIHPGVESLSVAAAAAILCDRVFAFECAKQS 548


>gi|54308633|ref|YP_129653.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
 gi|46913062|emb|CAG19851.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 157

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +  +     R       A+    +   VI+++ +  
Sbjct: 10  CIGLFNPKTPENVGSVLRASGCYGVNSVFYTGTRYDL----AKQFCTDTKNVINNIPLIG 65

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +KE + D+  +  T           +   E A  L E     +    IFG E   L  E
Sbjct: 66  -VKE-LKDIIPVGCT--------PIAVDLIEGAKPLPEYKHP-ERAFYIFGPEDGTLKKE 114

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                   I  P       +N++ AV ++++
Sbjct: 115 ITDFCRDTIYVPTKGC---MNLAAAVNVILY 142


>gi|226360105|ref|YP_002777883.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226238590|dbj|BAH48938.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 269

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 12/86 (13%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGRERWGLTNEEIALS 140
           R R+    +     A I L      G+                +FG E  GL     A +
Sbjct: 171 RERDTAAVLDTISAAGIQLLATAADGEVDLDDADELLARPTAWLFGNEAHGLDAATAARA 230

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
           +  +  P++    SLN++ A  + ++
Sbjct: 231 DHRVRIPIHGRAESLNLATAASICLY 256


>gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
           DSM 9485]
 gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
           DSM 9485]
          Length = 252

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  +N+G + R         + +   R    +    ++S+ A   +  V + +NL + I 
Sbjct: 107 QDPQNLGTLLRTAEAVGCHGIIIPGRRAAEITPAVVNASSGAVEHL-RVAMVTNLSQTIE 165

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L           N    V   ++      + +     +G++ G E  G++       + 
Sbjct: 166 ELQH---------NGIWVVGLEQDETAQDIDAVDLNLPLGLVIGAEGTGMSRLVRERCDF 216

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  P+     SLN + A  + ++      
Sbjct: 217 LVRLPIVGQIGSLNAAVAGSIAIYHAWRQR 246


>gi|110634520|ref|YP_674728.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110285504|gb|ABG63563.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 153

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 17/161 (10%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-- 71
           G  I L  P +  N G + R      L  + L+ P     S++A   +      ++    
Sbjct: 5   GFRIALFQPDIPGNTGAILRLSACLGLA-VDLIEPAGFDLSDRALKRA--GMDYLELAAL 61

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII-FGRERW 130
           R  ++ +    D +     + R++   + +L     A  +  + FS ++  I+ FGRE  
Sbjct: 62  RRHASWE----DFN-----SWRHQEARRIILF--TTAGTVPYQCFSFRDGDILMFGRESS 110

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G+ +      N  +  P+     SLN++ A  +   E +  
Sbjct: 111 GVPDHVHNAVNYRLVIPMKEGTRSLNVAMAAAMACGEAVRQ 151


>gi|256848250|ref|ZP_05553693.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714848|gb|EEU29826.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 289

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 18/168 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L N+     I L       NIG + R+     +  + + +        ++   S     
Sbjct: 127 ALPNAHPRIAI-LEHIVNPANIGAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVF 185

Query: 67  VIDS----VRVFSNLKEAIADLHFIYATTARN--RNNFKSVLAPKEAAIVLNERIFSGQN 120
            +       +++    E I+ LH +   TA    R+N   +  P         ++     
Sbjct: 186 QVPWTYIDAKIWQT--EGISLLHRLGYQTAAMALRHNTIRIDDP---------QLVKIDK 234

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + +I G E  GL    I  S+  I  P+     SLN++ A  L  WE 
Sbjct: 235 LAVILGSEGPGLEERTIMQSDFSIKIPMATGVDSLNVAAASALAFWEL 282


>gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152]
 gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152]
          Length = 248

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 57/151 (37%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N G + R      +  + +        + +   +SA A   +   +V  ++K+A+     
Sbjct: 110 NFGAIIRTAECTGVNGIIIQKNGSAPVNAETIKTSAGAAFKMPICKV-DHIKDALFILQA 168

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           +++  + AT   + + +                +   Q + II G E  G+    + + +
Sbjct: 169 SNIKTVAATEKTDSSIY---------------DVNFNQPIAIIMGSEHRGVNPSVLKMVD 213

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                P++    SLN+S A  + ++E +   
Sbjct: 214 YKAKLPLSGNIESLNVSVACGVFLYETVRQR 244


>gi|302187110|ref|ZP_07263783.1| hypothetical protein Psyrps6_12195 [Pseudomonas syringae pv.
           syringae 642]
 gi|330952608|gb|EGH52868.1| hypothetical protein PSYCIT7_14813 [Pseudomonas syringae Cit 7]
          Length = 166

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +           + + K    +   D + D+ ++  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   E A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIEDLKSIL-----PLGCIPVAVELVEGARALPEYTHPDRAL-YIFGPEDGSLDQ 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           E       ++  P       +N++  V +++++ M   I   S  +  +E+  PA+ 
Sbjct: 112 EIRDWCEDVVYIPTEGC---MNLAATVNVVLYDRMAKGINTRSGPQFGREKIDPASD 165


>gi|297520579|ref|ZP_06938965.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli OP50]
          Length = 86

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 123 IIFGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++FG E  GL    +    +   I  P+ P   S+N+S AV ++V+E    
Sbjct: 26  LMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQ 76


>gi|227822223|ref|YP_002826194.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii
           NGR234]
 gi|227341223|gb|ACP25441.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii
           NGR234]
          Length = 153

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 21/168 (12%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVI 68
                I L  P +  N G + R      L  + ++ P     S++    +     A   +
Sbjct: 1   MNELRIALYQPDIPGNTGTILRLAACLGLA-VDIIEPAGFDLSDRNLKRAGMDYIAAVTL 59

Query: 69  DSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                +   +   A +    + A+T       +      +                ++FG
Sbjct: 60  TRHVNWERFETWRAESGRRLVLASTKAAEPYTRFEFRADDI---------------LLFG 104

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           RE  G+ +     ++A I  P+ P   SLNI+ A  ++V E +  +  
Sbjct: 105 RESAGVPDHVHDRADARILIPMAPGQRSLNIAMASAMIVGEAIRQTGA 152


>gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio
           salmonicida LFI1238]
 gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio
           salmonicida LFI1238]
          Length = 247

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 16/169 (9%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSAN 63
            + +  + P+  +L       N+G   R      +    +V P+D   S  A     +  
Sbjct: 88  DIMDKTENPLFLVLDGVTDPHNLGACLRNADGAGVAA-VIV-PKDKSASMTATVSKVACG 145

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A  ++  VRV           +      A        V    EA   + +   +G  + I
Sbjct: 146 AAEMVPLVRVT----------NLARTMRALQEKGVWFVGTAGEATKDVFQSKLTG-PLAI 194

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  G+        + +I  P+     SLN+S A  + ++E +   
Sbjct: 195 VMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCLFEAVRQR 243


>gi|117927678|ref|YP_872229.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
 gi|117648141|gb|ABK52243.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
          Length = 163

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 19/137 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           + V+P++  N G   R        +L LV P     S+     +        +V V  N+
Sbjct: 5   VFVEPRIPPNTGNAIRLAAATGC-ELHLVGPLAFDMSDARLRRAGLDYHEFATVVVHPNM 63

Query: 78  KEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             A  +     I+A T R    +  V                     ++FG ER GL + 
Sbjct: 64  DAAWEVLASGRIFAFTGRAERPYTDVEYRD--------------GDALMFGTERTGLPDS 109

Query: 136 EIA--LSNAIISFPVNP 150
            +        +  P+ P
Sbjct: 110 ILTDPRITERVRIPMLP 126


>gi|332292383|ref|YP_004430992.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170469|gb|AEE19724.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 153

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               E     +    + G E  GLTNE I  S+ +I FP      SLN+S A  ++++
Sbjct: 90  AETLETFHHPRRCVYLLGAEDHGLTNEAIEKSHFLIKFPST---LSLNVSVAGSIVLY 144


>gi|290476233|ref|YP_003469133.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289175566|emb|CBJ82369.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 339

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 17/150 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEA-I 81
             N+G + R+  +F +  + L +          R++   A+ +  ID+    + L +   
Sbjct: 201 PHNLGAIMRSCAHFGVQGVILQDVAMLESGAAVRTAEGGAEHIKGIDADGFTTTLNQFRC 260

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A    +  TT+ ++ +                +    + + ++ G+E  GL++      +
Sbjct: 261 AGYTIV--TTSSHKGST------------TLAKADLPEKMVLVLGQESDGLSDSIWEDGD 306

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +S        SLN+S A  +M+ E    
Sbjct: 307 IRLSIGGTGRIESLNVSVATGIMLAEWWRQ 336


>gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 261

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 17/152 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A  P+++L+       N+G V R+   F     R V       + +  + +  A   ++ 
Sbjct: 109 AGQPLLVLLDRVTDPHNVGAVLRSAEVFGA---RAVIAPHRHSAPETGALAKTASGALER 165

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFG 126
                  NL E +  L             +  V    EAA+ L E     +G+ V ++ G
Sbjct: 166 QPYLRVGNLGETMEKL---------KAMGYILVGLEGEAAMTLAEGLEGTAGRPVALVLG 216

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            E  GL  +     + ++  P    F SLN+S
Sbjct: 217 AEGPGLREKTRETCDRLVRIPAAGEFGSLNVS 248


>gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 251

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            ++G+I G E  G++       + I S P+     SLN S A  ++ +E +   I    
Sbjct: 189 GSIGLIIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQRIAKGA 247


>gi|219683043|ref|YP_002469426.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620693|gb|ACL28850.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 169

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 25/186 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M       +     P +    P++  N G   R       T L LV P      +     
Sbjct: 1   MMTAREAAETPTTTPHLCYYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRR 59

Query: 61  SANADCVIDSVRVF--SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +       D   V    N ++ +  +    I A TA               A  L   + 
Sbjct: 60  A--GLDYHDMAHVVLHPNFEDLVESMPNSRIIAFTA--------------HATKLYTEVE 103

Query: 117 SGQNVGIIFGRERWGLTN--EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 ++FG E   + +  + +A  +    +  P+ P   SLN++    + ++E     
Sbjct: 104 YKPTDILLFGPEPGNIPDPMDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQL 163

Query: 173 IVSSEK 178
                +
Sbjct: 164 GFDGGQ 169


>gi|117919921|ref|YP_869113.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3]
 gi|117612253|gb|ABK47707.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3]
          Length = 202

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 69/195 (35%), Gaps = 39/195 (20%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P++Q +     I LV+P+   N+G + RA   + +           + + K    +A 
Sbjct: 13  AKPEVQQA---VYIGLVNPKTPTNVGGIMRASGCYGVD--------AVFYTGKRYEYAAR 61

Query: 64  A-----DCVIDSVRV-----FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
                      +         ++L +A+ +D   +              +     A  L 
Sbjct: 62  GPQQYNADTQSAAERIPLTGVASLLDALPSDTKLVC-------------VDLVLGATPLP 108

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E +   +    +FG E   +  E I  ++A++  P       +N++ +V +++++ +  +
Sbjct: 109 EFVHP-EKAFYVFGPEDGTIGQEIIDRADAVVYVPT---VGCMNLAASVNVLLYDRLAKA 164

Query: 173 IVSSEKNVKEQNTPA 187
                    E +  A
Sbjct: 165 HREQVSAQTEFDGDA 179


>gi|153840022|ref|ZP_01992689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
           parahaemolyticus AQ3810]
 gi|149746420|gb|EDM57441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
           parahaemolyticus AQ3810]
          Length = 128

 Score = 50.1 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 10/94 (10%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSG----------QNVGIIFGRERWGLTNEEIALSNA 142
           R  N  +++   +E  I                     + I+ G E  G+        + 
Sbjct: 35  RVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDD 94

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +I  P+     SLN+S A  + ++E +   + + 
Sbjct: 95  LIKIPMAGSVSSLNVSVASGICLFEAVRQRLAAK 128


>gi|311696507|gb|ADP99380.1| tRNA/rRNA methyltransferase (SpoU) [marine bacterium HP15]
          Length = 242

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 30/175 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P  P  +       I L + Q   N+G + R +  F   +  L++P    P + K   +S
Sbjct: 89  PERPA-EPVLGEKAIYLHEVQDPGNLGTILRTLAWFGGFR-CLLSPGSVDPFNPKVVRAS 146

Query: 62  ANA--DCVIDSVRVFSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
             A     +++    ++L +   ++A L      +  +R   +                 
Sbjct: 147 MGALFHVPLETDVALTSLPDRYQSLACLDLNGG-SMASRGFREHDC-------------- 191

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECME 170
                  +FG E  G+  E +    A+  S        SLN++ AV +  +E M 
Sbjct: 192 ------YLFGNEARGVPREALDQLKAVPYSIQGQGQIESLNLASAVNMCTYELMR 240


>gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
           PHSC20C1]
 gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
           PHSC20C1]
          Length = 345

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 22/168 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRV- 73
           + L       N+G + R++  F   Q  +V P  R    +  A  +SA A     + R  
Sbjct: 193 VALDGITDPRNLGAIVRSVAAFG-GQGVIV-PQRRSVGMTASAWKTSAGA-----AARTP 245

Query: 74  ---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
               +NL + I +         + R  F   L   +  + L     + + V I+ G E  
Sbjct: 246 VAMANNLTQMIKEY--------KKRGVFVLGLD-GDGDVSLPSLPLAKEPVLIVVGSEGK 296

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           GL+       +AI+S P++    SLN   A  + ++E  +    + +K
Sbjct: 297 GLSRLVTENCDAIVSIPISASTESLNAGIAASVTLYEISKLRSAARKK 344


>gi|219685293|ref|ZP_03540112.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
 gi|219673066|gb|EED30086.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
          Length = 218

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             + + FG E  GL+ E    ++  +  P++    S NIS AV ++++  
Sbjct: 127 NKMAVFFGTELTGLSAEAFEAADLYLKIPMHGFTQSYNISVAVAIVMYSL 176


>gi|51598313|ref|YP_072501.1| spoU protein [Borrelia garinii PBi]
 gi|51572884|gb|AAU06909.1| spoU protein [Borrelia garinii PBi]
          Length = 218

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             + + FG E  GL+ E    ++  +  P++    S NIS AV ++++  
Sbjct: 127 NKMAVFFGTELTGLSAEAFEAADLYLKIPMHGFTQSYNISVAVAIVMYSL 176


>gi|323358259|ref|YP_004224655.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323274630|dbj|BAJ74775.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 227

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R+   F   ++ ++  +  W    A  +          VR   +++    
Sbjct: 92  QHDLNIGSIVRSANAFLAAEVHIIG-KRRWNRRGAMVT-----DRYQHVRHHEDVE---- 141

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                   TA  R +   V+A       +   R    +   ++FG+E  GL+ E +A ++
Sbjct: 142 ------TFTAWARGSGLPVIAIDNVEGSVPVNRAELPEACVLLFGQEGPGLSPEALAAAS 195

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A++         S+N + A  ++++E     
Sbjct: 196 AVVEITQYGSTRSINAASAAAVVMYEWCRRW 226


>gi|291300017|ref|YP_003511295.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290569237|gb|ADD42202.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 173

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 17/149 (11%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKE 79
           PQ G N+G + R+          L  P+  W  E  R      + +     V    + + 
Sbjct: 36  PQHGANLGTLLRSCDAVGA---CLAVPKWSWVPEALRR----GNTLPGKACVHWVHDPEG 88

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            +A          R        +   E A  L +   + Q    + G ER G+  E + L
Sbjct: 89  WLAQ--------RRAEGVRVVGVELAEDATRLADVPMARQRTIAVLGHERRGIPPEVLDL 140

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            + ++  P+     SLN++ A  L++++ 
Sbjct: 141 LDEVVEIPMIGAGASLNVAVAGSLVLYKL 169


>gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 307

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 16/151 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---EAI 81
             N+G + R+   F    + +   R    +  A  +SA A   +   +V +NL    E +
Sbjct: 169 PHNLGAIIRSAAAFGADGVIIPERRSASLTASAWKASAGAAARLRVAKV-TNLNRGLERL 227

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A   F+ A  A   +              +         + ++ G E  GL+       +
Sbjct: 228 AKAGFVIAGLAGEAD------------TDIAGIPGVNGPLVLVVGSEGAGLSRMVREHCD 275

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++S P+     SLN S A  + ++E     
Sbjct: 276 VLVSIPITSEVESLNASVATAIALYEVSRAR 306


>gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
          Length = 318

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 17/174 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
                   G V+ L +     N+G V R++  F    + +   R    +  A  +SA   
Sbjct: 159 QAASAPQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTA 218

Query: 66  CVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   +   +  +LK+     + +                         +         
Sbjct: 219 ARLPVAKATNMVRSLKQLQQAGYQVVGL--------------DAGGDHTLDTYDGTTPTV 264

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I+ G E  GL+       + I+S P+     SLN S A  +++ E       + 
Sbjct: 265 IVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318


>gi|308235806|ref|ZP_07666543.1| rRNA methylase [Gardnerella vaginalis ATCC 14018]
 gi|311114467|ref|YP_003985688.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310945961|gb|ADP38665.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 321

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 18/152 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-----------DCVIDSVRV 73
             N G + R       + +  V+      + K   S+A +           D   D  + 
Sbjct: 165 PGNAGAIIRVADVAGCSAVVFVDDCVNRFNSKLVRSTAGSLFHLPVVTMSEDDWFDWTKS 224

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++   AD   IY T  +   +F ++L P   +  LN+    G N  I+FG E  GL 
Sbjct: 225 LK-IRVIAAD---IYGTENKKPKSFANLLKP--LSDDLNKGYNEGSN-AILFGNEARGLP 277

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            E +   + I   P+     S+N++ +  +M+
Sbjct: 278 EEILNRVDEISVIPIYGKAESMNLATSAAVML 309


>gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
 gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
          Length = 249

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N+G + R      +  + L        + +   +SA A   I   +V ++LK+A+     
Sbjct: 109 NLGAILRTAECTGVDAVILPKSGSAQVNNETIKTSAGAAFNIPICKV-NHLKDALFYLKS 167

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + +  +  T               E        +   + + ++ G E  G+    + +++
Sbjct: 168 SGVEIVAVT---------------EKTNTSVYELELNKPLALLMGGEGEGIQPSILKMAD 212

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                P+     SLN+S A  ++++EC+   
Sbjct: 213 VKGKLPMLGSIESLNVSVACGVILYECLRQQ 243


>gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 267

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 14/176 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           +  +  N+  GPV++L       N+G + R+        + L        + KA  +SA 
Sbjct: 105 HPREGVNANAGPVLVLDRVSDPGNVGTLLRSAAAAGSAAVLLSEGSADPYNPKAVRASAG 164

Query: 64  ADCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A   +    + +  + E +  +   +A             +    A  L +         
Sbjct: 165 ALFAVSFAVLPWEEIHEVLHTVPKRFAA----------YYSDSSQAYYLADLC---PPCA 211

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           I+ G E  GL+++ ++LS   +  P+     SLN + A  ++++E     ++   +
Sbjct: 212 ILVGSEASGLSHQALSLSTHNLWIPMQNNIESLNAAVAGSILLFESRRQMLIREGR 267


>gi|170780648|ref|YP_001708980.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155216|emb|CAQ00317.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 270

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 15/160 (9%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P    L   A+  V++L D     N+G + R++         LV PR   P   +A   S
Sbjct: 109 PSVASLLADARR-VVVLEDVVDPTNVGAIFRSVGAIG-ADAVLVTPRCTDPFYRRAIRVS 166

Query: 62  ANADCVIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                 +   R   +   + A+AD  F  A  A         ++ ++     +E++    
Sbjct: 167 MGTVLQVPWTRTGEWPETRAALADAGFHVAALA----LTPDAVSIRDFPAEDHEKL---- 218

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
              I+ G E  GL+ E I  ++ ++  P+     SLN++ 
Sbjct: 219 --VIVLGSEGPGLSAEAIRSADTVVQIPMAHGIDSLNVAA 256


>gi|167035103|ref|YP_001670334.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1]
 gi|166861591|gb|ABY99998.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1]
          Length = 156

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 24/154 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
            I L +P+  EN+G V RA   +       VN     G   E+AR      D V D+ RV
Sbjct: 8   CIGLFNPKSAENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55

Query: 74  FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++    I DL  I              +   E A  L E     + +  IFG E   L
Sbjct: 56  HYDIPLIGIDDLQRII-----PLGCTPVAVELVEGARPLPEYTHPDRAI-YIFGPEDGSL 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + E        I  P       +N++  V ++++
Sbjct: 110 SEEVRGWCEETIYIPTEGC---MNLAATVNVVLY 140


>gi|325475311|gb|EGC78496.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 262

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   NIG + R   +F + ++ L +      S KA+ ++      +   R  ++L   + 
Sbjct: 128 RTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWER--ADLGS-LP 184

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN- 141
           DL  I   T                   +++  F  + + ++ G E  G++ E +  +  
Sbjct: 185 DLPLIVLETG---------------GTDISKFDFPKKGI-VVIGSEELGVSPEAVKKAQG 228

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +I+ P+  +  S+N+S A  + + +  E     
Sbjct: 229 RVITIPMYGIKASINVSVAFGICMQKWCEALTAD 262


>gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 310

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 11/163 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           ++    ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 157 DTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 216

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R  +NL   + D            +    V+    A     + +     + ++ G E 
Sbjct: 217 VAR-ATNLTRTLKDWA----------DRGLRVIGLDAAGETAVDDLDGSDPLVVVVGSEG 265

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+       + ++S P+     SLN S A  +++ E     
Sbjct: 266 KGLSRLVRQNCDEVVSIPMAGRAESLNASVAAGVVLAEIARQR 308


>gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
           aestuarii DSM 271]
 gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
           aestuarii DSM 271]
          Length = 243

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 15/170 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +   ++   ++IL   Q   NIG + R+        + LV  +    +     +SA A  
Sbjct: 87  EKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVAADAVVLVEGKGSPVNATVHKASAGA-- 144

Query: 67  VIDSVRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +  +RV    +LK+ +  L          R+    ++A    A      I   +   +I
Sbjct: 145 -LPHMRVCKVKSLKKCLELL----------RSKKFQIVAADMHAERNYTDIDFTRPSALI 193

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            G E  GL    +   +AI+  P+     SLN+S    ++++E M   + 
Sbjct: 194 MGEEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLYEAMRQRLT 243


>gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
           BAA-613]
          Length = 270

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           NVG + G E  GLT E  +L++ ++  P+     SLN + A  ++++E     
Sbjct: 208 NVGFLIGNEANGLTEETTSLADCLVKIPMEGKVESLNAAIAASVLMFETARQR 260


>gi|295693354|ref|YP_003601964.1| rRNA methylase [Lactobacillus crispatus ST1]
 gi|295031460|emb|CBL50939.1| rRNA methylase [Lactobacillus crispatus ST1]
          Length = 255

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R           +++P      + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDG-VILSPESADLYNPKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L + I D        A     + S+L      +   E++     + +I G E  G++  
Sbjct: 171 DLADVITDFQ------AAAIPVYASMLDRSAKQLPDFEKVPQ---LALIIGNEAHGVSPT 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +L++  +  P+     SLN + A  +M++
Sbjct: 222 IASLADEKLYIPIKGQAESLNAAVAAGIMIY 252


>gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 257

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 19/152 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N G + RA   F +  +          + K   ++  +   +  VR  + L + +A
Sbjct: 116 QDPGNAGTILRAAAWFGIEAVVAGAGTVDLYNPKVVRAAMGSHWDLALVRTGA-LPDLLA 174

Query: 83  DLHFIYATT--ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            L     T   A       S   P+E A+             ++ G E  GL        
Sbjct: 175 QLQANGFTCYGADLEGTPASRWQPREPAV-------------LVLGSEAHGLQPAVRERL 221

Query: 141 NAIISFPVNP---LFPSLNISQAVLLMVWECM 169
            A ++ P +P      SLN++ A  ++++E +
Sbjct: 222 TARVTVPGSPRRQATESLNVAMAATVLLYEWL 253


>gi|213163301|ref|ZP_03349011.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 124

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 70  GRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 123


>gi|196006305|ref|XP_002113019.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
 gi|190585060|gb|EDV25129.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
          Length = 246

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            ++N  +   ++L       N   + R M          + P   +  +    + A A  
Sbjct: 61  AVKNRTRSIAVVLEGITNEGNEQAIYRTMDALGFQTAHRI-PSPLYRLKTCGRTDAGAMK 119

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            ID +  + + +E I+ L             +K +    E      +         ++ G
Sbjct: 120 WID-IESWKSTEECISQLKSC---------GYKILATSSENKTKTLDSFDFSNKTAVVLG 169

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E+ G++ E + L + +    +     S N+S A  ++++   ++ I     +     T 
Sbjct: 170 SEQEGISKEAMNLVDNVFRISMVGFVESYNVSVAAAIILYHIYQDRIRKLGYH--GDLTE 227

Query: 187 ATKGELL 193
           A + +LL
Sbjct: 228 AEQDDLL 234


>gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 258

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 18/147 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82
             N+G + R+      +    V       + +  + +  A   ++        NL +AI 
Sbjct: 119 PHNVGAILRSAEVLGAS---AVIGTKHHSAPETGALAKTASGALERQPYLRVRNLADAIR 175

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLTNEEIAL 139
            L                VL     A    E    G+    V ++ G E  GL  +    
Sbjct: 176 ALQ----------GMGYLVLGLDGEATQTIETAVEGRRDRPVALVLGAEGPGLREKTRET 225

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
            +A++       F SLN+S A  + ++
Sbjct: 226 VDALVRIDAAGGFGSLNVSNAAAIALY 252


>gi|330968088|gb|EGH68348.1| hypothetical protein PSYAC_26292 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 166

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +           + + K    +   D + D+ ++  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   + A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIEDLKSIL-----PLGCIPVAVELVDGARALPEYTHPDRAL-YIFGPEDGSLDQ 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           E       ++  P       +N++  V +++++ M   I   S  +  +E+  PA+ 
Sbjct: 112 EIRDWCEDVVYIPTE---GCMNLAATVNVVLYDRMAKGINTRSGPQFGREKTDPASD 165


>gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parauberis NCFD 2020]
 gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parauberis NCFD 2020]
          Length = 249

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 19/168 (11%)

Query: 10  NSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++   P+I IL       N G + R      +  + +   R    +     +S  A   +
Sbjct: 97  DAEDNPLILILDGITDPHNFGSILRTADATKVAGVIIPKHRAVGVTPVVAKTSTGAIQHM 156

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV +    L +     ++I+ T                      +   SG  + +I 
Sbjct: 157 PIARVTNLSQTLDKLKEKGYWIFGT--------------DMDGTPSPKWNTSG-KLALII 201

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G+++      + +I+ P++    SLN   A  ++++E   N +
Sbjct: 202 GSEGKGVSHNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVYRNKL 249


>gi|163839504|ref|YP_001623909.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162952980|gb|ABY22495.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 300

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           Q     FG E  GL+ EE+  ++  ++ PV+    SLN+  A  + ++      
Sbjct: 244 QPTLWFFGNEAQGLSTEELEAADHRVAVPVHGSAESLNVGTAATVCLYASARAQ 297


>gi|145353351|ref|XP_001420979.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357416|ref|XP_001422915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581215|gb|ABO99272.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583159|gb|ABP01274.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 216

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NI  V R      +    +V+ +    S KA   ++        V  F   + A+    
Sbjct: 57  GNILAVCRTTEALGIGCASIVSSKG--LSFKASGRTSGGALKWQHVEQFETSERALR--- 111

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
              A     +     VL  +                 ++FG ER G+++E  AL +  + 
Sbjct: 112 --VA-----KAKGYRVLTTEFDGAQPLSHYDWTVPTAVVFGNEREGVSDEARALRDGAVY 164

Query: 146 FPVNPLFPSLNISQAVLLM 164
            P+     SLNIS A  L+
Sbjct: 165 IPMFGFTESLNISVAAALV 183


>gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
 gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
          Length = 264

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 12/150 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R     N+  + + NP+    +     SS                +E I 
Sbjct: 124 EKPGNVGAILRTADAANIDAVIIANPKSDLYNPNIVRSSVGCLFTRQIA--VGTTEEVI- 180

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    A  + N  S+ +                   ++ G E  GL+ +    S  
Sbjct: 181 ---------AYLKANNISIYSATLQDSTEYHTQNYTTPTALVVGTEATGLSEKWRIESTK 231

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I  P+     S+N+S A  ++++E     
Sbjct: 232 NIIIPMQGEIDSMNVSVAAAILLFEAKRQR 261


>gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 266

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 15/159 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + L        +E     SA A   +   R+ +       
Sbjct: 119 EDPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVTRIGN------- 171

Query: 83  DLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 A T R    + F  +     A     ++      + ++ G E  G++     L 
Sbjct: 172 -----IAQTIRALKEDGFW-IAGADMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELC 225

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           +  +  P+     SLN S A  ++++E M          
Sbjct: 226 DFTVRLPMRGKINSLNASVAGAILMYEAMRQRTAKDAVP 264


>gi|222086838|ref|YP_002545372.1| RNA methylase protein [Agrobacterium radiobacter K84]
 gi|221724286|gb|ACM27442.1| RNA methylase protein [Agrobacterium radiobacter K84]
          Length = 276

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
             +  V++       +NIG + R    F    + L          KA   S  +   +  
Sbjct: 124 PKRPLVLVGCGISNHDNIGSMFRNAAAFGADAVLLDETCCDPLYRKALRVSVGSVLTMPY 183

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            R F        D+  +  T    R      L+P+         +    ++ ++ G E  
Sbjct: 184 RREF-------RDVDLL--TALAERGFAIWSLSPR--GKTDIRAVPPTDHIALVVGTEGE 232

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           GL  E ++   + +  P  P   SLN++ A  + ++E 
Sbjct: 233 GLPQEILSTFGS-VRIPQAPGLDSLNVATASGIALFEM 269


>gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 274

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 +FG E WGL +E+ AL++A++  P+     SLN++ A  + ++      
Sbjct: 219 AAPTAWVFGNEAWGLRDEDRALADAVVRVPIRGRAESLNLATAATVCLYASARAQ 273


>gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 249

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 18/158 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL +     N+G + R      +  + +   R    +     +SA A   +   RV    
Sbjct: 103 ILDELADPHNLGSIMRTADAAGVHGIIIPKRRAVGLTSVVAKTSAGAIERVPVARVTNLV 162

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              KE  A   +++ T               +       R  +   V ++ G E  G++ 
Sbjct: 163 QTAKELKARGVWLFGT---------------DMQGTDYRRWDAQGAVAVVIGNEGKGISP 207

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + +++ P+     SLN S A  L++++   + 
Sbjct: 208 LLKKTCDEMLTIPMVGQVQSLNASVAASLLIYQGFSSR 245


>gi|224373768|ref|YP_002608140.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
 gi|223589277|gb|ACM93013.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
          Length = 209

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 71/200 (35%), Gaps = 27/200 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R     N+ +L   + R    +      +              +++E   ++
Sbjct: 33  SHNLSAIVRTCDAVNVGKLYYRHQRKVRLNNDITMGAHK----WIFHEYVEDIEEFYKNI 88

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +  ++ V+   +   V    +   +   I+ G E  G ++  I  ++  +
Sbjct: 89  ---------KKEGYQVVVTLLDEETVDFREVDYTKPTLIVLGNEVDGASDISIKYADKKV 139

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLE 204
             P+  +  SLN+S A  ++++E                +TP+   ++      +E +L+
Sbjct: 140 IIPMYGMSQSLNVSVANAVILYEAQRQRAAK-----GMYDTPSLPEDV------IEKTLK 188

Query: 205 ERGYFRPVEKKKKMLDDLYS 224
           +  Y   +EK+   L  +  
Sbjct: 189 KWAYDDIIEKE---LRRVRH 205


>gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|1731374|sp|Q10543|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           Rv0881/MT0904
 gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
          Length = 288

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           + P   A  L E I   S + + ++ G E  GLT   + +S+  +  P++    SLN++ 
Sbjct: 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 268

Query: 160 AVLLMVWE 167
           A  L  +E
Sbjct: 269 AAALAFYE 276


>gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus
           Lc 705]
 gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           rhamnosus Lc 705]
          Length = 260

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R      +  + +   R    +      S  A   +   RV +NL + I 
Sbjct: 119 EDPHNLGSILRTADASGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARV-TNLAQTIK 177

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L     +I+ T    ++        ++          +  +  ++ G E  G++     
Sbjct: 178 ILKDRGMWIFGTAMDGQDY-------RQW--------DAKGSTALVIGNEGKGISPGIAK 222

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +A I+ P+     SLN S A  +++++   + 
Sbjct: 223 LMDATIAIPMVGHVQSLNASVAAGILMYQAFASR 256


>gi|225352209|ref|ZP_03743232.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157456|gb|EEG70795.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 290

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           +Y T +R          P+    V+           ++FG E  GLT E +  ++ I+S 
Sbjct: 209 VYGTDSRQ---------PESLTDVIAAPETLAGAKAVLFGNEARGLTKEVLERTDRIVSI 259

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           P+     SLN+  +  +M+     +S V  
Sbjct: 260 PLYGKAESLNLGTSSAVMLLSLAMSSHVER 289


>gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 321

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 47/194 (24%)

Query: 1   MTPYAPQLQ----NSAKGPVIILVDPQLGENIGMVARA-----------MWNFNLTQLRL 45
           +    P L         GP+++L       N+G + R+           M          
Sbjct: 155 LADALPSLAIEDMTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME--------- 205

Query: 46  VNPRDGWPSEKARS-SSANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKS 100
              R+      A + +++ A  ++  VRV +    L +A+  L F +             
Sbjct: 206 ---RNAPDETGALAKAASGALEIVPLVRVVNLARTL-DALKSLDFWVVGL---------- 251

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
                    +L+   F  + V ++ G E  GL        + I    +     SLN+S A
Sbjct: 252 ----DAGGGILDGTSFGQRRVALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNA 307

Query: 161 VLLMVWECMENSIV 174
             + ++E +     
Sbjct: 308 AAVALYELVRRGKA 321


>gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           3_1_27]
 gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           3_1_27]
          Length = 234

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L    K  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y                   A +          
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EASINYNEENYSNK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 IILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 246

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L   +   N+G + R    F +  L          + K   +S  +   +  V +F 
Sbjct: 98  TVVLDGVRDPGNLGTIIRLCDWFGIENLICSLDTVDCYNPKVVQASMGS---LTRVEIF- 153

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                 +DL  +        +    V         +  +    + + I+ G E  G++ E
Sbjct: 154 -----YSDLVNVLGA-----HKNIPVFGTMLNGENIYSKKKPDKAL-IVMGNEANGISEE 202

Query: 136 EIALSNAIISFPVNPLFP---SLNISQAVLLMVWECMENSIVSS 176
             AL +  I+ P         SLN++ A  +++ E   +SI+  
Sbjct: 203 IQALISNKITIPQFGEIQETESLNVATATSIILSEFRRSSIIEK 246


>gi|54023885|ref|YP_118127.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54015393|dbj|BAD56763.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 279

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 15/164 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           P++       + + V+     N G + R         + L        + K   +SA + 
Sbjct: 115 PEVLARDPRLLAVPVEIAEPGNAGTLIRVADAVGADGVVLAGHTVDPHNGKCVRASAGSL 174

Query: 65  --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
               V+    V   L +A+         TA +           E  +   + I +G  V 
Sbjct: 175 FHVPVVRGREVVPTL-DALHAAGLTLLATAADG----------EVVLDEADEILAG-PVA 222

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +FG E  GL     A ++  +  P++    SLN++ A  + ++
Sbjct: 223 WLFGNEAHGLDPAVAARADHRVRIPIHGRAESLNLAAAAAICLY 266


>gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 234

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L    K  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     ++Y                   A +          
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWVYGAAG--------------EASINYNEENYSNK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 IILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 272

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 13/156 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +  +N+G + R      +  + L        +E     SA A   +   R+ +       
Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGN------- 180

Query: 83  DLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                 A T R  +     +     +     +       + ++ G E  G++     L +
Sbjct: 181 -----IAQTMRALKEQGFWIAGADMSGEETYDHANLTGALVLVIGSEGRGMSRLTRDLCD 235

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +  P+     SLN S A  ++++E        + 
Sbjct: 236 FTVRLPMVGKINSLNASVAGAILMYEAQRQRRAKAA 271


>gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus 214-1]
 gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus CTV-05]
 gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus 214-1]
 gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus CTV-05]
          Length = 251

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++++ T                A     E    G+ V ++ G E  G+       
Sbjct: 169 LKKRGYWVFGT--------------DMAGTDYREWNAQGKTV-LVIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I+ P+     SLN S A  +++++   + 
Sbjct: 214 MDQTITLPMVGHVQSLNASVATGVLLYQAYNSR 246


>gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
           JV-V01]
 gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
           MV-3A-US]
 gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
           JV-V01]
 gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
           MV-3A-US]
          Length = 251

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++++ T                A     E    G+ V ++ G E  G+       
Sbjct: 169 LKKRGYWVFGT--------------DMAGTDYREWNAQGKTV-LVIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I+ P+     SLN S A  +++++   + 
Sbjct: 214 MDQTITLPMVGHVQSLNASVATGVLLYQAYNSR 246


>gi|269956236|ref|YP_003326025.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304917|gb|ACZ30467.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 276

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G   R+     +    LV PR   P   ++   S      +   R+ +    L+E   
Sbjct: 141 NVGAAFRSAAALGV-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLETWPGGLRELQD 199

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSN 141
           D   + A            LA  + A+ L+E      + + ++ G E  G+T   +   +
Sbjct: 200 DGFVVVA------------LALSDDAVSLDELAADPPEKLAVVLGTEGHGMTAAALDACD 247

Query: 142 AIISFPVNPLFPSLNI 157
            ++  P+     SLN+
Sbjct: 248 VVVKIPMAGGVDSLNV 263


>gi|84394228|ref|ZP_00992956.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|86147034|ref|ZP_01065351.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218709943|ref|YP_002417564.1| RNA methyltransferase [Vibrio splendidus LGP32]
 gi|84375142|gb|EAP92061.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|85835099|gb|EAQ53240.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218322962|emb|CAV19139.1| RNA methyltransferase [Vibrio splendidus LGP32]
          Length = 163

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-VIDSVRV- 73
            + LV+P+  EN+G V RA   +    +     R       AR    +     ++   + 
Sbjct: 15  CVGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDH----ARQFHTDTKEKHLELPLIG 70

Query: 74  FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +LK+ I                     +   E A  L +          IFG E   L
Sbjct: 71  VEDLKDIIPVGCV-------------PIAVDLIEGAKPLPDYKHP-PRAFYIFGPEDGTL 116

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             E        I  P N     +N++ AV ++++
Sbjct: 117 KKEITDFCRETIYVPTNGC---MNLAAAVNVILY 147


>gi|332236257|ref|XP_003267321.1| PREDICTED: probable methyltransferase TARBP1 [Nomascus leucogenys]
          Length = 1621

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++
Sbjct: 1474 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 1532

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + + I     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 1533 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1577

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               +  +  P   +  SLN+  +  L++WE     ++S      
Sbjct: 1578 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 1621


>gi|330814214|ref|YP_004358453.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487309|gb|AEA81714.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 235

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 12/146 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R    F ++ L ++  +    S     S++ A   I  ++V SNL  AI +L  
Sbjct: 100 NIGSIIRNCAAFEISHL-IIEKKINIDSHYLFKSASGATEHIQFIKV-SNLNTAIQEL-- 155

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                   RN F  V +    A    + I  G    I+ G E  G+ N     S+     
Sbjct: 156 -------KRNGFF-VFSAALDAKQTMKEISFGSKNCIVLGSEGEGVRNLISKNSDEHFKI 207

Query: 147 PVNPLFPSLNISQAVLLMVWECMENS 172
             +    SLN+S    ++     +N+
Sbjct: 208 EHSSNIDSLNVSNTSAIIFNHLYQNT 233


>gi|307183316|gb|EFN70185.1| Probable methyltransferase TARBP1 [Camponotus floridanus]
          Length = 325

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 13/179 (7%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           Y   LQ+  +G +++        N+G +AR    F +  L + N  D    ++ +  S +
Sbjct: 158 YQQDLQSHKEGLIVVASFINRPPNLGGIARTCEIFGVKALVIAN-LDYIKDKEFQCLSVS 216

Query: 64  ADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A+  I+ ++V    L++ + +           +N   S++  ++ A  +N      +   
Sbjct: 217 AERWINILQVKPHELQKYLFE----------KKNAGWSLIGAEQTANSINLLQTKFEKKT 266

Query: 123 I-IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           I + G E+ G+    I L +  +  P   +  SLN+     + +W+      +     V
Sbjct: 267 ILVLGNEKDGIPANFIPLFDTCVEIPQVGVIRSLNVHVTAAICIWQYASQHTLRQFSQV 325


>gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
          Length = 274

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 19/163 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI------ 68
           +++L +     N+G + R+     +    L+ P    P   +A   S      I      
Sbjct: 123 IVVLENVMNPTNVGAIFRSAAALGM-DAVLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFD 181

Query: 69  -DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              V+   N +E + ++ F  A  A + ++    ++  E A+   E++       +I G 
Sbjct: 182 GKKVKWPENGQELLREMGFKTAAMALSDDS----VSIDEPALRREEKL------AVIMGT 231

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  GL  + I  S+ ++  P++    SLN++ A  +  W+   
Sbjct: 232 EGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 274


>gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
 gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
          Length = 257

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + G E  GLT+   AL++  I  P+     SLN + A  L+++E    
Sbjct: 203 AFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 252


>gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
           27755]
 gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
           27755]
          Length = 252

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 24/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           I+L D +   N+G + R         + +   R    +     +SA A       +V + 
Sbjct: 107 ILLDDIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNL 166

Query: 76  -----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 LKE    L F+ A                +       ++     +G++ G E  
Sbjct: 167 TKTMKELKE--KGLWFVCA----------------DMGGESMYKLNLTGPIGLVIGNEGE 208

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G++       + + S P+     SLN S A  ++ +E +   +
Sbjct: 209 GVSRLVKETCDFVASIPMKGDIDSLNASVATGVLAYEIVRQRL 251


>gi|112491246|pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
           Protein 1
 gi|112491247|pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
           Protein 1
          Length = 184

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
             N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++
Sbjct: 37  PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 95

Query: 80  AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              + + I     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 96  KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 140

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
              +  +  P   +  SLN+  +  L++WE     ++S      
Sbjct: 141 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 184


>gi|110825988|ref|NP_005637.3| probable methyltransferase TARBP1 [Homo sapiens]
 gi|74739787|sp|Q13395|TARB1_HUMAN RecName: Full=Probable methyltransferase TARBP1; AltName: Full=TAR
            RNA-binding protein 1; AltName: Full=TAR RNA-binding
            protein of 185 kDa; Short=TRP-185
 gi|1184692|gb|AAC50379.1| TAR RNA loop binding protein [Homo sapiens]
 gi|56204383|emb|CAI22828.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|56205978|emb|CAI22931.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|119590399|gb|EAW69993.1| Tar (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|162318782|gb|AAI56250.1| TAR (HIV-1) RNA binding protein 1 [synthetic construct]
 gi|1586092|prf||2203267A TRP-185 protein
          Length = 1621

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++
Sbjct: 1474 PTNLGGLCRTCEVFGASVLV-VGSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 1532

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + + I     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 1533 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 1577

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               +  +  P   +  SLN+  +  L++WE     ++S      
Sbjct: 1578 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTKP 1621


>gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 276

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 23/157 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSVRV 73
           VI++       N+G + R+     L    L+      P E      +++ A  +I  + V
Sbjct: 129 VIVMDQITDPHNVGAIMRSAVA--LKAKALITTCRHSPHESGVLAKAASGALEMIHYITV 186

Query: 74  FSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             NL EA+ +LH    ++   +    K +           E   +G  + ++ G E  GL
Sbjct: 187 -RNLAEALQELHQTGFSSFGLDSEGDKPL-----------ETALTGNKIALVLGAEGKGL 234

Query: 133 ---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              T E +    A+    +     SLN+S A  + ++
Sbjct: 235 RKKTRETV--C-ALTRLDMPGNIKSLNVSNAATIALY 268


>gi|154488238|ref|ZP_02029355.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis
           L2-32]
 gi|154083389|gb|EDN82434.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis
           L2-32]
          Length = 227

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    N +
Sbjct: 79  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 135

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
           + +  +    I A TA               A  L   I       ++FG E   + +  
Sbjct: 136 DLVESMPDSRIIAFTA--------------HATKLYTDIEYKPTDILLFGPEPGNIPDPM 181

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + +A  +    +  P+ P   SLN++    + ++E       +  K
Sbjct: 182 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFAGGK 227


>gi|90023058|ref|YP_528885.1| hypothetical protein Sde_3418 [Saccharophagus degradans 2-40]
 gi|89952658|gb|ABD82673.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 177

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 31/178 (17%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L++P+   N+G + RA   F      L                        + +  ++ K
Sbjct: 11  LINPKSPTNVGAIMRAAGCFG-ANYVLYT----------------GQRYSKAAKFHTDTK 53

Query: 79  EA-----IADLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +A     +  +     A +A      K V        V        ++   +FG E   +
Sbjct: 54  QASQHIPLRGVDNLATAVSA----GVKIVCVDLIEGAVALPDFTHPEHALYVFGPEDGTI 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
               I  ++A +  P       LN++  V +++++  +   ++S     ++   A++ 
Sbjct: 110 NQSIIDAADAAVYIPTKGC---LNLAATVNVVLYD-RQAKNLTSLSANGDELIRASRD 163


>gi|298384290|ref|ZP_06993850.1| rRNA methylase [Bacteroides sp. 1_1_14]
 gi|298262569|gb|EFI05433.1| rRNA methylase [Bacteroides sp. 1_1_14]
          Length = 266

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  V+I  +VD     NIG + R+     +  + L        + +A   S     ++ 
Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175

Query: 70  SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +  +L +   +       A T  + +    VL              +   + I+ G 
Sbjct: 176 WTWMDGSLSDLGKLGFRTAAMALTDNSVSIDDPVL-------------ATEPRLAIVMGT 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  GL+ E IA ++ ++  P++    SLN++ A  +  W+    
Sbjct: 223 EGDGLSPETIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLRAR 266


>gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           K]
 gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           K]
          Length = 256

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 23/187 (12%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A          +++L   +   N+G + R+        + +   R    +     +SA A
Sbjct: 87  ARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAKASAGA 146

Query: 65  ------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
                   V +  +    LKEA                   SV    +    L E    G
Sbjct: 147 VERCPVARVTNVAKTLERLKEA----------------GIWSVALAADGERPLGEADLKG 190

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
               ++ G E  G+        +     P++    SL++S +  + ++E       +  K
Sbjct: 191 -PTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAGTPSK 249

Query: 179 NVKEQNT 185
           +  E   
Sbjct: 250 SAVEMRP 256


>gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           SK209-2-6]
 gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           SK209-2-6]
          Length = 262

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P +IL+       N+G + R+      +   ++  R    + +  + +  A   ++ 
Sbjct: 109 AEVPRVILLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 165

Query: 71  VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125
                  NL + I +L           N    VL     A    E    G+    V ++ 
Sbjct: 166 QPYLRMRNLADTITELQ----------NMGFVVLGLDGEAEDTIESCLQGRKDLPVALVL 215

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  GL  +     + ++    +  F SLN+S A  + ++
Sbjct: 216 GAEGPGLRQKTKETVDHLVKIDASGGFGSLNVSNAAAIALY 256


>gi|320534170|ref|ZP_08034700.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133606|gb|EFW26024.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 278

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83
           N+G   R+     +    LV PR   P   ++   S      +   R+  +  + E +  
Sbjct: 146 NVGAAFRSAAALGI-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWPAMDE-LHG 203

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F  A  A +  +    +A  E A        +   V ++ G E  GL++  IA ++ +
Sbjct: 204 QGFTVAALALSDTS----VALDEFAA-STACTGADSRVAVVLGTEGDGLSHRTIAAADEV 258

Query: 144 ISFPVNPLFPSLNIS 158
           +  P+     SLN++
Sbjct: 259 VRIPMAGGVDSLNVA 273


>gi|156978209|ref|YP_001449115.1| 23S rRNA methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|156529803|gb|ABU74888.1| hypothetical protein VIBHAR_07014 [Vibrio harveyi ATCC BAA-1116]
          Length = 175

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 22/150 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L +P+   N+G V RA                      A     N      + +  ++ K
Sbjct: 11  LYNPKDPTNVGAVMRAA---GCYD--------------ATQVRYNGTRYNRAAKFRTDTK 53

Query: 79  EAIADLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
                +  +     TA    + K V                 +N   IFG E   L  E 
Sbjct: 54  NMHERIDLVEMDDLTAHLAEDVKVVCVELAVGATALPLFAHPENAVYIFGPEDGSLPQEV 113

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +  ++ ++  P N     +N++  V ++++
Sbjct: 114 VDKADHVVYVPTNGC---MNLAATVNVVLY 140


>gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97]
 gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215402681|ref|ZP_03414862.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
           02_1987]
 gi|215410467|ref|ZP_03419275.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426147|ref|ZP_03424066.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|215429738|ref|ZP_03427657.1| putative rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215445022|ref|ZP_03431774.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|218752546|ref|ZP_03531342.1| putative rRNA methyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|219556746|ref|ZP_03535822.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800097|ref|YP_003033098.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254231189|ref|ZP_04924516.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
 gi|254363812|ref|ZP_04979858.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549858|ref|ZP_05140305.1| rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185777|ref|ZP_05763251.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260199901|ref|ZP_05767392.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|260204083|ref|ZP_05771574.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289442291|ref|ZP_06432035.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289446446|ref|ZP_06436190.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289555338|ref|ZP_06444548.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289568845|ref|ZP_06449072.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289573507|ref|ZP_06453734.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289744611|ref|ZP_06503989.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289749403|ref|ZP_06508781.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752936|ref|ZP_06512314.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
 gi|289756966|ref|ZP_06516344.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289761012|ref|ZP_06520390.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
 gi|294996361|ref|ZP_06802052.1| rRNA methyltransferase [Mycobacterium tuberculosis 210]
 gi|297633398|ref|ZP_06951178.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297730383|ref|ZP_06959501.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298524373|ref|ZP_07011782.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306792256|ref|ZP_07430558.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|313657710|ref|ZP_07814590.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|38258679|sp|P59968|Y905_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb0905
 gi|31617656|emb|CAD93766.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
           bovis AF2122/97]
 gi|121492451|emb|CAL70919.1| Possible rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600248|gb|EAY59258.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
 gi|134149326|gb|EBA41371.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
           Haarlem]
 gi|224772388|dbj|BAH25194.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321600|gb|ACT26203.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289415210|gb|EFD12450.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289419404|gb|EFD16605.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289439970|gb|EFD22463.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289537938|gb|EFD42516.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289542599|gb|EFD46247.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289685139|gb|EFD52627.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289689990|gb|EFD57419.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289693523|gb|EFD60952.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
 gi|289708518|gb|EFD72534.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
 gi|289712530|gb|EFD76542.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|298494167|gb|EFI29461.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308339179|gb|EFP28030.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|323720590|gb|EGB29668.1| rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326904900|gb|EGE51833.1| rRNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328459835|gb|AEB05258.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 288

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           + P   A  L E I   S + + ++ G E  GLT   + +S+  +  P++    SLN++ 
Sbjct: 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 268

Query: 160 AVLLMVWE 167
           A  L  +E
Sbjct: 269 AAALAFYE 276


>gi|262040314|ref|ZP_06013565.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042423|gb|EEW43443.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 131

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 18/142 (12%)

Query: 33  RAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAIADLHFIYA 89
           R+  +F +    +V       S  A  ++   A+ V  I        L +     + I +
Sbjct: 2   RSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVS 60

Query: 90  TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149
           T++ N         PK               + +  G+ER GL++  I+ ++  ++    
Sbjct: 61  TSSHNGTPLFKAELPK--------------KMVLALGQERDGLSDAAISSADLSVAIDGT 106

Query: 150 PLFPSLNISQAVLLMVWECMEN 171
               SLN+S A  +++ E    
Sbjct: 107 GNVESLNVSVATGVLLAEWWRQ 128


>gi|253569710|ref|ZP_04847119.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840091|gb|EES68173.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 266

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  V+I  +VD     NIG + R+     +  + L        + +A   S     ++ 
Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175

Query: 70  SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +  +L +   +       A T  + +    VL              +   + I+ G 
Sbjct: 176 WTWMDGSLSDLGKLGFRTAAMALTDNSVSIDDPVL-------------ATEPRLAIVMGT 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  GL+ E IA ++ ++  P++    SLN++ A  +  W+    
Sbjct: 223 EGDGLSPETIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLRAR 266


>gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
           clarridgeiae 73]
 gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
           clarridgeiae 73]
          Length = 282

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             + ++ G E+ GL++      N +   P      SLN++ A  LM++E     +
Sbjct: 219 GPIILLMGNEQKGLSDVLANHCNNLARIPQCGYADSLNLAVATALMLYEIRRPYL 273


>gi|120437322|ref|YP_863008.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117579472|emb|CAL67941.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 154

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +  EN+G++ R+  N   + +  +  R    +      +  A         +   ++  A
Sbjct: 19  KTPENLGVLWRSAQNMGASFIYTIGNRYSKQACDTHK-AVGAMPYFH----YETFEDFYA 73

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L          +      +   E+A  L E     +    + G E  GL+N+ I  ++ 
Sbjct: 74  HL---------PKGAMLVGVELNESAEHL-EDFKHPRRCVYLLGAEDHGLSNQAIDKAHY 123

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
           ++ F       SLN+S A  ++++
Sbjct: 124 LVKFKST---LSLNVSVAGSIVMY 144


>gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
           cellulosolvens 6]
 gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
           cellulosolvens 6]
          Length = 305

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---SNLKE 79
           +   N+G + R         + +   R    +     +SA A       +V    + + E
Sbjct: 167 EDPHNLGAIIRTANLAGAHGVIITRHRAVGLTATVAKASAGAINYTPVAKVTNLGATIDE 226

Query: 80  AIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                + F+ A     R     +  P                +G++ G E  G++     
Sbjct: 227 LKKKGMWFVCAAMDGTRMYDLDLKGP----------------IGLVIGNEGEGVSRLVRE 270

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   S P+     SLN S A  ++ +E +   
Sbjct: 271 KCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 304


>gi|297522035|ref|ZP_06940421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           OP50]
          Length = 103

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + ++ G E  G+        + +IS P+     SLN+S A  + ++E +   
Sbjct: 49  GRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 102


>gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
 gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
          Length = 260

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 66/160 (41%), Gaps = 24/160 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVIDSVRVF 74
           ++++   Q   N+G + R         L + +     + + K   S+  +   +D + + 
Sbjct: 117 IVVVDRVQDPGNMGTIIRTADAAGF-DLIICIKGTVDYYNPKVVRSAMGSMFYMDMMSLD 175

Query: 75  SNLKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           +  +EA     + D+  +            S L  +       +++   +N  ++ G E 
Sbjct: 176 N--EEARDLLKVNDIDIV-----------SSYLDTENY----YDKVDYKENTALVVGNEA 218

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            G+++  I  S+ ++  P+     SLN++ +  L++++ +
Sbjct: 219 NGISDFWIRQSDVLVKIPMFGKAESLNVAVSSALLMYKIL 258


>gi|163814438|ref|ZP_02205827.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
 gi|158450073|gb|EDP27068.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
          Length = 301

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 12/156 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L +     N+G + R+     +  + L          ++   S      I    +    
Sbjct: 156 VLENVMNPINVGAIFRSAAALGMDAVLLTGGCSDPLYRRSARVSMGTVFQIPWTYIGDMT 215

Query: 78  K--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              + +  + F  A +   RN+   +  P+         +   + + +I G E  GL   
Sbjct: 216 AGMDILHAMGFKTA-SMALRNDTIDINDPR---------LKEVEKLAVILGTEGEGLKTS 265

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            I  S+  I  P+     SLN++ A  +  WE  + 
Sbjct: 266 TIYASDFTIKIPMFHGVDSLNVATASAVAFWELGKR 301


>gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 253

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +   + P ++L+      +N G + R+        + +        +     +SA A 
Sbjct: 86  EARQKKEAPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAV 145

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   RV +    ++E      +++A  A +    K V    E    +           
Sbjct: 146 EYMKIARVVNLRRTIEELKEKGIWVFAADASS---PKPVY---ECDFTI--------PTC 191

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           I+ G E  G++      ++ +I  P      S N S A  ++ +E ++  +   E
Sbjct: 192 IVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246


>gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis
           SJ95]
          Length = 240

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSAN---ADCVIDSV 71
           +IL   Q   N G + R      +  + +  P+D            S+       +I   
Sbjct: 93  VILDQIQDPHNFGAIVRTSVAAGVDAIII--PKDNAVEVTPVVIKVSSGQIFKIPIIKVT 150

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + + ++    +  ++Y          K               I     + ++FG E  G
Sbjct: 151 NLSNTIETLKKENVWVYG----ADVEGKPYY-----------EIDWQGKICLVFGNEGNG 195

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +        + ++S P+     SLN+S +  ++++E  +  I
Sbjct: 196 IRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILFEAKKQRI 237


>gi|322378717|ref|ZP_08053148.1| SpoU methylase [Helicobacter suis HS1]
 gi|322380665|ref|ZP_08054817.1| rRNA methylase [Helicobacter suis HS5]
 gi|321146987|gb|EFX41735.1| rRNA methylase [Helicobacter suis HS5]
 gi|321148860|gb|EFX43329.1| SpoU methylase [Helicobacter suis HS1]
          Length = 228

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 42/178 (23%)

Query: 1   MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLT----QLRLVNPRDGWPSE 55
           + P    L++      I +L       N+G + R++           L +       P E
Sbjct: 73  LPPQKSTLKDIKTLDKILVLCGLSDVGNVGALFRSVAALGFEGVILDLHM-------PYE 125

Query: 56  KARSSSANA---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
               SS  A           ++D   +   LKEA     F Y    R ++   +V     
Sbjct: 126 GLVRSSLGALYDVPFCVCQNILD--VICE-LKEA---GVFCYGAHIRGQDVKNAVFT--- 176

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
                         + +  G E  GL +  +   + ++   +     SLN+S A  ++
Sbjct: 177 ------------HPLALFLGSEGMGLHSRILNKMDQLLHIKMQGKMDSLNVSVAGAIL 222


>gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4]
          Length = 260

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 29/174 (16%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L++     +++L + Q   N+G + RA     +T L +        + K   S+  +   
Sbjct: 105 LKSDRPAHLMVLENLQDPGNLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVF- 163

Query: 68  IDSVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-----ERIFSG 118
               RV      +L++ + DL       AR           +  A  L      E+    
Sbjct: 164 ----RVPFFYTDDLEQTVLDLK------ARG---------IRVFAAHLAGKNNYEQEDYT 204

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            N   + G E  GLT +   +++  +  P+     SLN + A  ++++E     
Sbjct: 205 GNTAFLIGNEGNGLTEKLSDMADTWVKIPMEGKVESLNAAIAASILMFETARQR 258


>gi|29349921|ref|NP_813424.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341832|gb|AAO79618.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 266

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  V+I  +VD     NIG + R+     +  + L        + +A   S     ++ 
Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175

Query: 70  SVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +  +L +   +       A T  + +    VL              +   + I+ G 
Sbjct: 176 WTWMDGSLSDLGKLGFRTAAMALTDNSVSIDDPVL-------------ATEPRLAIVMGT 222

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  GL+ E IA ++ ++  P++    SLN++ A  +  W+    
Sbjct: 223 EGDGLSPETIAEADYVVRIPMSHGVDSLNVAAAAAVAFWQLRAR 266


>gi|195020532|ref|XP_001985214.1| GH16936 [Drosophila grimshawi]
 gi|193898696|gb|EDV97562.1| GH16936 [Drosophila grimshawi]
          Length = 410

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 21/180 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            QL +      ++  + +   N+G + R       TQ+ + +        KA        
Sbjct: 230 QQLGSEPLPITVVCDNIREPNNLGSIIRTCAALPCTQVVVTHGCCDPWESKALRGGCGGQ 289

Query: 66  CVI--DSVRVFSNLK-----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIF 116
             +       +  L      EA  D H   A       N       +E    +   E   
Sbjct: 290 FRLPIRDDVTWEQLALHIPPEAAEDCHVFIA------ENNPEKRTSQEGRTTVDYAELGK 343

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170
            G +  +I G E  G++ +     +        +  P+     SLN++ A+ L+++E   
Sbjct: 344 VGAHNILIIGGESHGVSEDAYRFMHLVGSRGKCVYIPLAMGIDSLNVASALTLILFELRR 403


>gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
 gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
          Length = 246

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N G + R      +  + +        +  A  +SA A   +   +V  ++K+AI     
Sbjct: 110 NFGAIIRTAECTGVDGIIIQKKGGAPVNADAVKTSAGAIFKMPICKV-DHIKDAIYHLQS 168

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + +  + AT       +                      V I+ G E  G++   + + +
Sbjct: 169 SGVQIVAATEKTENTLYDVDFTI---------------PVAIVMGSEGKGVSPSILKIVD 213

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                P+     SLN+S A    ++E +   
Sbjct: 214 HQAKLPMLGEIASLNVSVACGAFLYEIVRQR 244


>gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
           17244]
          Length = 242

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 46/177 (25%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V+IL +     N G + R+                        +  A AD VI   R
Sbjct: 95  KPLVVILDNITDPHNAGAIIRS------------------------AYCAGADGVIMQTR 130

Query: 73  VFSNLKE--------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---- 120
             +++ E        AI  +           N  +++   K+  + +     +G+N    
Sbjct: 131 RSASIGEGMYKSSAGAIEHIDLC-----EVSNIAQTIDTLKKEGLFVVGLDMNGENYYDM 185

Query: 121 -----VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + ++ G E  GL        + I S P+   F SLN S A  ++++E ++  
Sbjct: 186 DYDMPLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLFEAVKTR 242


>gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 228

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + G E  GLT+   AL++  I  P+     SLN + A  L+++E    
Sbjct: 174 AFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 223


>gi|308176903|ref|YP_003916309.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744366|emb|CBT75338.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 292

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 17/183 (9%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   ++ ++    + +L   Q   N G + RA        + L        + KA  S+ 
Sbjct: 113 PQLSEVLDTKPKLIAVLCRIQDPGNAGTILRAADAAGADAVILTKGSVDIYNPKAVRSTV 172

Query: 63  NADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-----R 114
            +     V+++V     +  A      + A            L   + A VL        
Sbjct: 173 GSLFHLPVLNNVEFDHLIAAAKTTGSQVLA----ADGYAAHNLDTLQDAAVLRANQPGTE 228

Query: 115 IFSGQNVG-----IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              GQ V       +FG E  GL   E   ++  ++ P+  +  SLN+  A  + ++   
Sbjct: 229 APEGQPVLEAPTLWLFGNEGQGLDEHEKQAADYRVAVPLYGVAESLNVGTASTVCLYASA 288

Query: 170 ENS 172
              
Sbjct: 289 RAQ 291


>gi|171743049|ref|ZP_02918856.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
           27678]
 gi|171278663|gb|EDT46324.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
           27678]
          Length = 288

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76
           N+G + R+    ++    LV P  G P   +A   S      I   R+         F+ 
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTG 195

Query: 77  LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++E + DL F   A    + +     L  +               + +IFG E  GL++ 
Sbjct: 196 MRE-LHDLGFTTVAMALEDDSVSLDELVRRLNNG--PAETDHIDRLALIFGTEGDGLSHH 252

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I+ ++  +  P++    SLN++ +  +  +
Sbjct: 253 TISRADLTVKIPMSHSVDSLNVAASSAVAFY 283


>gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 318

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 17/174 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
                   G V+ L +     N+G V R++  F    + +   R    +  A  +SA   
Sbjct: 159 QAASAPQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTA 218

Query: 66  CVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   +   +  +LK+     + +                         +         
Sbjct: 219 ARLPVAKATNMVRSLKQFQQAGYQVVGL--------------DAGGDHTLDTYDGTTPTV 264

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           I+ G E  GL+       + I+S P+     SLN S A  +++ E       + 
Sbjct: 265 IVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318


>gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 234

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 21/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
            +L    K  V+IL + Q   N G + R+   F +  L ++  R+    +E    +S  A
Sbjct: 80  EELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKV-DLIIIPERNSVRINETVVKTSTGA 138

Query: 65  DCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              ++  +V +NL + I  L     +IY        N+     P                
Sbjct: 139 IEYVNISKV-TNLSDTINKLKKLDYWIYGAAGEANINYNEEDYP--------------NK 183

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V ++ G E  G+  +     + +I  P+     SLN+S A  +++
Sbjct: 184 VILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|157138295|ref|XP_001664217.1| hypothetical protein AaeL_AAEL013974 [Aedes aegypti]
 gi|108869532|gb|EAT33757.1| conserved hypothetical protein [Aedes aegypti]
          Length = 451

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 69/170 (40%), Gaps = 23/170 (13%)

Query: 9   QNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           + + +G +++  LV+     N+G +AR+   F + Q  +VN      +++ ++ S  A+ 
Sbjct: 292 KGNVEGLIVVASLVN--RAPNLGGLARSSEIFAVKQ-YIVNSLKDLENKEFQALSMTAEK 348

Query: 67  VIDSV-----RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            ++       ++   L E  +  + +    A      + +           ++I   +  
Sbjct: 349 WLNVAELKSFQIVDYLLEMKSKGYSVVG--AEQTTGSRPI-----------QQIEFPKRS 395

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ G E+ GL    I+  + I   P   +  SLN+     + +WE  + 
Sbjct: 396 ILVLGHEKEGLPAHIISHLDIIAEIPQFGVVRSLNVHVTGAIFMWEYAKQ 445


>gi|28871068|ref|NP_793687.1| hypothetical protein PSPTO_3916 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969699|ref|ZP_03397834.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383550|ref|ZP_07231968.1| hypothetical protein PsyrptM_12996 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062116|ref|ZP_07253657.1| hypothetical protein PsyrptK_19191 [Pseudomonas syringae pv. tomato
           K40]
 gi|302130106|ref|ZP_07256096.1| hypothetical protein PsyrptN_01860 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28854318|gb|AAO57382.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925507|gb|EEB59067.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 165

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +           + + K    +   D + D+ ++  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   E A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIEDLKSIL-----PLGCIPVAVELVEGARALPEYTHPDRAL-YIFGPEDGSLDQ 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           E       ++  P       +N++  V +++++ M   I   S  +  +E+  PA+ 
Sbjct: 112 EIRDWCEDVVYIPTE---GCMNLAATVNVVLYDRMAKGINTRSGPQFGREKVGPASD 165


>gi|331658726|ref|ZP_08359670.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA206]
 gi|315300563|gb|EFU59792.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 16-3]
 gi|331054391|gb|EGI26418.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA206]
          Length = 345

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL + E   
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAERDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|113969762|ref|YP_733555.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4]
 gi|114046991|ref|YP_737541.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7]
 gi|113884446|gb|ABI38498.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4]
 gi|113888433|gb|ABI42484.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7]
          Length = 202

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 69/195 (35%), Gaps = 39/195 (20%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P++Q +     I LV+P+   N+G + RA   + +           + + K    +A 
Sbjct: 13  AKPEVQQA---VYIGLVNPKTPTNVGGIMRASGCYGVD--------AVFYTGKRYEYAAR 61

Query: 64  A-----DCVIDSVRV-----FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
                      +         ++L +A+ +D   +              +     A  L 
Sbjct: 62  GPQQYNADTQSAAERIPLTGVASLLDALPSDTKLVC-------------VDLVLGATPLP 108

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E +   +    +FG E   +  E I  ++A++  P       +N++ +V +++++ +  +
Sbjct: 109 EFVHP-EKAFYVFGPEDGTIGQEIIDRADAVVYVPT---VGCMNLAASVNVLLYDRLAKA 164

Query: 173 IVSSEKNVKEQNTPA 187
                    E +  A
Sbjct: 165 HREQLSAQTEFDGDA 179


>gi|194874184|ref|XP_001973355.1| GG13393 [Drosophila erecta]
 gi|190655138|gb|EDV52381.1| GG13393 [Drosophila erecta]
          Length = 405

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 22/171 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSV 71
              ++  + +   N+G + R       +Q+ + +        KA            I   
Sbjct: 235 PITVVCDNIREPNNLGSIIRTCGALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDD 294

Query: 72  RVFSNLK-----EAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  L      EA  D H   A +  R R N +++           +    G +  +I 
Sbjct: 295 VTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDY--------ADIQSLGAHNLLII 346

Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G++ E     N        I  P+     SLN++ A+ L+++E   
Sbjct: 347 GGESHGVSEEAYRFLNMVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRR 397


>gi|72080482|ref|YP_287540.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 146

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            I + +++  +FGRE  G+  E +          +  P+     SLN++  V+++ +E  
Sbjct: 67  EIETKKDIFFVFGRESTGIPIEILKKNKEKC---LRIPMIAKARSLNLANTVVIIAYEFH 123

Query: 170 EN 171
             
Sbjct: 124 RQ 125


>gi|71893495|ref|YP_278941.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 146

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEI----ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            I + +++  +FGRE  G+  E +          +  P+     SLN++  V+++ +E  
Sbjct: 67  EIETKKDIFFVFGRESTGIPIEILKKNKEKC---LRIPMIAKARSLNLANTVVIIAYEFH 123

Query: 170 EN 171
             
Sbjct: 124 RQ 125


>gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex]
          Length = 308

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 12/161 (7%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L + Q   N G + R+ +     ++ + + +    +     +S+    ++    + +  +
Sbjct: 149 LNEIQDPMNFGSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMNTTE 208

Query: 79  --EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             + + +  + +  T ++   +  +   P                  II G E  GL +E
Sbjct: 209 FCQLLKESKWDVVGTGSKTDESNGTACKPTPVGSF-----QLSNPTLIILGNEGRGLPDE 263

Query: 136 EIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENS 172
            + L    I        N    S+N+S A  +++   + NS
Sbjct: 264 LVDLCTHQIYVESRSNLNKNVDSMNVSAAAAVILHSVLNNS 304


>gi|308799147|ref|XP_003074354.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
 gi|116000525|emb|CAL50205.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
          Length = 249

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 20/171 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+GM+ R+   F++  L L+  R      K  +  +       +   +  L+EA   L 
Sbjct: 44  HNLGMMMRSCTAFDVKALVLIGSR------KFNAFGSQGADAHVAFEHYETLREAREGL- 96

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW------GLTNEEIAL 139
                TA+        +   E+A  +    F+G N   + G E        GLT ++ A+
Sbjct: 97  -----TAKRGVTRVLGVEIVESAEPIESHPFTG-NTAFVMGNEARLDAQGHGLTEQQKAI 150

Query: 140 SNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
            +  +      P   SLN+S A  +++ +    +     + V E+   A +
Sbjct: 151 CDGFVYIRQYGPGTASLNVSVAASIVMHQFALWANYQERERVGEKFVVAER 201


>gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH
           391-98]
          Length = 254

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 20/148 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +    V  NL+E I 
Sbjct: 114 QDPGNLGTIIRTADAAGVHAVVLGEGCVDAYNSKVLRSTQGSIFHLP--VVKGNLEEWID 171

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      +Y T   N   +                I    +  +I G E  G+  + +A
Sbjct: 172 KLKTHNVPVYGTALENGVPY--------------GEITPTGSFALIVGNEGNGVHQDILA 217

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +  +  P+     SLN++ A  ++ +
Sbjct: 218 KCDQNLYIPIYGGAESLNVAVAAGILTY 245


>gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 247

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVF- 74
           + L +     NIG + R+  +F +  L +V  R      K    S++     ++  +V  
Sbjct: 100 VCLDEVTDPRNIGSLIRSAASFKIDGL-IVKERHFPSDSKLMYKSASGCMEHLNIFKVSN 158

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             S LK       ++Y   AR   NF  V                     ++FG E +G+
Sbjct: 159 INSTLKNLREKNFWVYGFDARGEKNFTDV--------------KWEGKNVLLFGSEGFGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                  ++  +   +N    SLNIS +  ++    
Sbjct: 205 KEHTGKYADFFVKIDINKDIESLNISNSAAIVFHHL 240


>gi|148679865|gb|EDL11812.1| mCG129058 [Mus musculus]
          Length = 1534

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKE 79
              N+G + R    F    L  V         + +  S +A+  +  V V  +     L++
Sbjct: 1387 PTNLGGLCRTCEVFGAAVLV-VGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMDYLQQ 1445

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              A+ + +     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 1446 KKAEGYTVIGVEQTAQSSDLAQ-YRFP--------------EKSLLLLGNEREGIPANLI 1490

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
               +  +  P   +  SLN+  +  L++WE     ++   +  
Sbjct: 1491 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAEPP 1533


>gi|15889520|ref|NP_355201.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|15157398|gb|AAK87986.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 161

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 21/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--- 63
            L  +     I L  P +  N G + R      L  + ++ P     S++    +     
Sbjct: 4   TLPETGPNIRIALYQPDIPGNTGTILRLAACLGLG-VDIIEPAGFDISDRNLKRAGMDYI 62

Query: 64  ADCVIDSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           A   +     +   +E  A      + A+T                A  +          
Sbjct: 63  AAAALTRHVSWDRFEEWRASTGRRLVLAST----RAALPYTDITYRADDI---------- 108

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++FGRE  G+ +     ++  I  P+     S+N++ +  ++  E +  +
Sbjct: 109 -LLFGRESAGVPDHVHDKADERIIIPMVAGQRSINVAMSAAMVTGEALRQT 158


>gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7]
          Length = 234

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 21/146 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           +L       N+G   R         L ++ P+D     +   R  +  A  VI  V V +
Sbjct: 101 VLDGVTDPHNLGACLRTADAAGA--LAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTN 158

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L++      ++  T               EA + L ++  +G  + II G E  G+
Sbjct: 159 LARTLEKLQQRGLWVVGTAG-------------EAEVELYQQDLTGPTI-IIMGAEGKGM 204

Query: 133 TNEEIALSNAIISFPVNPLFPSLNIS 158
                   + ++  P+     SLN+S
Sbjct: 205 RRLTREHCDYLVGLPMAGSVSSLNVS 230


>gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1 [Ascaris suum]
          Length = 334

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-----VRVFSNLKE 79
             NIG + R+ + F +  + L   RD  P     + S  +   ++      V  F + ++
Sbjct: 182 PGNIGAIIRSCFYFRIDGVILA--RDQGPKTLTAAMSKASAGALERFPVYTVEDFPSFRK 239

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            + ++ F   AT+  N    K   +P    I L +       V II G E  G+  + ++
Sbjct: 240 RLRNVGFKFIATSDENSAITKGYQSP----IRLPDFRPINDKVVIILGDEGRGIATDILS 295

Query: 139 LSNAIISFPVN 149
             + I+  P +
Sbjct: 296 QCDYIVQIPTS 306


>gi|297190579|ref|ZP_06907977.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486]
 gi|197717892|gb|EDY61800.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486]
          Length = 190

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P  G N+G +AR           +  PR  W  E     +      +          + +
Sbjct: 53  PLHGANLGTLARTCDAVGA---CITVPRFPWVPE-----ALARGNTLRKPVCTHRTGDPL 104

Query: 82  ADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             L       AR R     ++  +  + A+ L +   +     ++ G E+ G+  E + L
Sbjct: 105 GWL-------ARQRERGARIVGVELADEAVRLADLAPARSPTVMVLGHEQHGIPPEALDL 157

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            +  +  P+     SLN++ A  L +++ 
Sbjct: 158 LDECVEIPMVGTGSSLNVAVAGSLALYKL 186


>gi|315083589|gb|EFT55565.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA2]
          Length = 240

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R           L+ PR   P   +A  +S      +   R+      L E + 
Sbjct: 102 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 159

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A            +   E +  L +     + V ++ G E  GL+   I+ ++ 
Sbjct: 160 DHGFTVA----AMELSGDSVTLDEFSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 212

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
           ++  P+     SLN++ A  +  +E  
Sbjct: 213 VVRIPMAGGVDSLNVAAAAAVACYELR 239


>gi|161502249|ref|YP_001569361.1| putative methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863596|gb|ABX20219.1| hypothetical protein SARI_00277 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 345

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDD-F 265

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +   TT+ +R               L E+      + ++ GRE   L        +
Sbjct: 266 RQAGYTVVTTSSDRGQA-------LFGATLPEK------MVLVLGREYDFLPEAAREPDD 312

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +         SLN+S A  +++ E    
Sbjct: 313 LCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|119478210|ref|ZP_01618266.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143]
 gi|119448719|gb|EAW29963.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143]
          Length = 157

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 52/158 (32%), Gaps = 32/158 (20%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
            I L +P+   N+G V RA   +       VN     G   + A+S         D+ R 
Sbjct: 7   CIGLHNPKSPVNVGSVMRAAGCYG------VNSVFYTGKRYDIAKSF------YTDTQRS 54

Query: 74  FSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVGIIFGRE 128
           +  L   A+ DL  I                P    +  + R             IFG E
Sbjct: 55  YETLPLIAVDDLETII----------PLGCVPVAIEMTKDARPLPAYKHPPRAFYIFGPE 104

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L    I   +  I  P       +N++ AV ++++
Sbjct: 105 DGSLRKNIIGYCSDTIYIPTTGC---MNLAAAVNVVLY 139


>gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 336

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 20/178 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSAN 63
             L+N      + L       N+G + R+   F   Q  +V P  R    +  A  +SA 
Sbjct: 174 RTLRNGETPLFVALDGITDPRNLGAIIRSTAAFG-GQGVIV-PQRRSAGMTASAWKTSAG 231

Query: 64  A---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A     V  +  +   LK       F+             +              F+ + 
Sbjct: 232 AAARTPVAMASNLTQTLKAFKQAGVFVLGLDGGGDTPLPGL-------------SFADRP 278

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           V I+ G E  G++       +A++S P+     SLN   A  + ++E  +    +  +
Sbjct: 279 VVIVVGSEGKGISRLVAETCDAVVSIPIAATTESLNAGIAASVTLYEIAKLRAQAQPR 336


>gi|315655485|ref|ZP_07908384.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490140|gb|EFU79766.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 283

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI---A 82
           N+G   R+          +V P    P   +A   S      +   R+      A+   A
Sbjct: 142 NVGAAVRSAAACG-YDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDPALFHEA 200

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                 A   R  +        ++ A  L       + V +I G ER GL  + IA ++ 
Sbjct: 201 GFELA-ALALREDSQ-----DLRDYATELA--GDPTRKVALIAGAERDGLKPQTIARADK 252

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
           ++   +     SLN++ A+ +  W
Sbjct: 253 VVRIAMAHGVDSLNVAGAIAIACW 276


>gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           saccharolyticum WM1]
 gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           saccharolyticum WM1]
          Length = 246

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 32/161 (19%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS------VRVFSN 76
           +   N+G + R                       A  + A+   +           V   
Sbjct: 106 EDPHNLGAIIRT----------------------ANLAGAHGVIIPKRRAVGLTATVAKT 143

Query: 77  LKEAIA--DLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGL 132
              A+    +  +   TA      K  +     +    +  R+     +G++ G E  G+
Sbjct: 144 SAGALNYTPVAKVTNLTATMEELKKRGMWFVCADMGGEVMYRLDLKGPIGLVIGSEGNGV 203

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                   + + S P+     SLN S A  ++ +E +   +
Sbjct: 204 GKLVRETCDMVASIPMKGNIDSLNASVAAGVLAYEIVRQRL 244


>gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 297

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 19/163 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI------ 68
           +++L +     N+G + R+     +    L+ P    P   +A   S      I      
Sbjct: 146 IVVLENVMNPTNVGAIFRSAAALGM-DAVLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFD 204

Query: 69  -DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              V+   N +E + ++ F  A  A + ++    ++  E A+   E++       +I G 
Sbjct: 205 GKKVKWPENGQELLREMGFKTAAMALSDDS----VSIDEPALRREEKL------AVIMGT 254

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           E  GL  + I  S+ ++  P++    SLN++ A  +  W+   
Sbjct: 255 EGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 297


>gi|153803685|ref|ZP_01958271.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-3]
 gi|124120781|gb|EAY39524.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-3]
          Length = 127

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 46/140 (32%), Gaps = 17/140 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L +P++  N G + R   N     L L+ P      EK    +      +  V    +
Sbjct: 4   IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKD 62

Query: 77  LKEAIADLHFIYATTARNRNNFKS-VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               I  L        R R +F+      K     ++ +   G    ++FG E  GL  E
Sbjct: 63  YAAFIEYLQ-------RERGSFRVFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAE 113

Query: 136 EIALSNAIISFPVNPLFPSL 155
                  I S P      SL
Sbjct: 114 ------LIASLPAEQRIASL 127


>gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
 gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
          Length = 267

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 16/152 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q   N+G + R    F ++   +  P      + KA  + A +   + +     +L++ +
Sbjct: 128 QDPGNVGTILRTASWFGVST-VVCGPGTADRYNPKAIRAGAGSVFCL-NHYSVGDLEKEL 185

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                      + R     ++           +    +   ++ G E  G++   +  ++
Sbjct: 186 E----------KMRRAGYHIICSSLHGTDFRLQHAVPERTVLVIGNEAKGVSMSILRKAD 235

Query: 142 AIISFP---VNPLFPSLNISQAVLLMVWECME 170
             I+ P    +    SLN + +  +++ E + 
Sbjct: 236 LQITIPRGRKDAGVESLNAAVSAGILLSEFVR 267


>gi|94984180|ref|YP_603544.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
 gi|94554461|gb|ABF44375.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
          Length = 153

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 23/146 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L +P+   N+G VAR         L L+ P      ++    +      +  V +  +
Sbjct: 8   VVLFEPEKAGNVGNVARTCAVLG-ADLHLIRPFGFHLHDREFRRAV--MDYLQGVTLHEH 64

Query: 77  -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                 + A+     ++A +                A   + R    +   ++FG E  G
Sbjct: 65  ANWTAYQAALPPEARVWAFST--------------HAETFHTRAGFRRGDHLVFGPESRG 110

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNI 157
           L    +  +   +  P      SLN+
Sbjct: 111 LPVW-LREALPALKLPQPGGGRSLNL 135


>gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942]
 gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942]
          Length = 248

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 20/151 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           Q   N+G + R      +  + +    V+  +G     A+ S  +   V  ++ VF  ++
Sbjct: 113 QDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSAQGSHFHIPIVKRNLHVF--IE 170

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E  A    +Y T+ +N + F              +      +  +I G E  G+ +  + 
Sbjct: 171 ELKASGVKVYGTSLQNGSAF--------------QETAPIGSFALIVGNEGAGVDSAILE 216

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            ++  +  P+     SLN++ A  ++++   
Sbjct: 217 KTDLNLYVPLYGQAESLNVAIAAAVLLYHLR 247


>gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             +G++ G E  G++       + + S P+     SLN S A  ++ +E +   +
Sbjct: 188 GPIGVVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSYEVVRQRM 242


>gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           HaA2]
 gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           HaA2]
          Length = 273

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 15/155 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSV 71
           G V++L       N+G + R+   F +    +V      P      +  ++ A  ++  +
Sbjct: 122 GIVLVLDQITDPHNVGAIMRSAAAFAVK--AIVTTARHSPEATGVLAKSASGALELVP-L 178

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            + +NL  A+ +L         +R      L  + +A +    +   Q + ++ G E  G
Sbjct: 179 VLVTNLARALTELE--------DRGYLTVGLDSEGSADLAAVELR--QPLALVLGAEGKG 228

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           L        N +    +     SLN+S A  L ++
Sbjct: 229 LRQLTRETCNVVARLDMPGAIKSLNVSNAAALALY 263


>gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
 gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
          Length = 246

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P++Q      +I+L   Q   N+G + R      +  + L +      ++K   ++  + 
Sbjct: 95  PKVQED-NNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGSI 153

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             I      + L++ I  L     T          +LA      V    +     VG+I 
Sbjct: 154 FHIP--IYTATLEQEIHMLQTQGFT----------ILATALHDAVEYTEVSVHNKVGLIL 201

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G E  G+    +  +N  I+ P+     SLN+  A  ++++   +
Sbjct: 202 GNEGAGIAPSLLNKANQRINIPIYGKAESLNVGIAAGILMYHLKK 246


>gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 262

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 12/165 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +   + + P ++L D Q   N+G + R      + Q+          S K   ++  A  
Sbjct: 107 EAPQALQQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADVYSPKVLQATMGA-- 164

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  V+V+                T   +     +    + A +   R+   Q   ++ G
Sbjct: 165 -LARVQVYRYTD-------RTALLTMLTQTEIPVIGTFIDGAPLRTLRLAPEQPYILVLG 216

Query: 127 RERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169
            E  G++++  AL +  I+   PV+    SLN++ A  +++   M
Sbjct: 217 NEGNGISSDLSALVSQRITIPSPVDSHCESLNVAVAGAIVMAHLM 261


>gi|297243865|ref|ZP_06927795.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888286|gb|EFH27028.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD]
          Length = 229

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    N +
Sbjct: 81  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRRA--GLDYHDMAHVVLHPNFE 137

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
             +  +    I A TA               A  L   I    N  ++FG E   + +  
Sbjct: 138 NLVESMPNSRIIAFTA--------------NATKLYTEIEYKSNDILLFGPEPGDIPDPM 183

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + +A  +    +  P+ P   SLN++    + V+E       +  K
Sbjct: 184 DVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQLGFTGGK 229


>gi|225181655|ref|ZP_03735095.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
           1]
 gi|225167636|gb|EEG76447.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
           1]
          Length = 264

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 16/163 (9%)

Query: 13  KGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           K P ++LV    Q   N+G + R+          L+       + KA  ++  A   +  
Sbjct: 111 KKPALLLVADGVQDPGNLGTMLRSAAAAGADGAILLPGTVDATNPKALRAAMGAYFALSV 170

Query: 71  VRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V     +   A+A       TTA               A V  +R      V ++ G E 
Sbjct: 171 VETNHQDCLSALAGHGVSLVTTA-------------ARAEVAYDRYDWNTPVAVVIGNEG 217

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G++      + + +S P+     SLN + A+ ++ +E     
Sbjct: 218 SGVSPAMAEAAKSRVSIPMAGAVESLNAAIAMSVIFFEAARQR 260


>gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
           10379]
 gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
           10379]
          Length = 251

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 20/155 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   Q   N+G + R    FN   + L         +K   S+  ++  ID    F 
Sbjct: 106 VLILDKIQDPGNLGTIIRTADAFNFDCIILGKGTTSLYGQKVIRSTQGSNFHID---CFD 162

Query: 76  NLK--EAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           N+   E I ++H   I+AT+ +                 + +       V ++FG E  G
Sbjct: 163 NIDLVELIDEMHEFNIFATSLKADKY-------------IEQLDNITGKVAVVFGNEGAG 209

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ E ++  N ++   +     SLN+S A  +++ 
Sbjct: 210 VSEEILSKVNNLLKISMPGRAESLNVSIAAGIVMH 244


>gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479
 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 309

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 11/162 (6%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           S    ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I  
Sbjct: 157 SLPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            R  +NL   + D            +    V+        + + +     + ++ G E  
Sbjct: 217 AR-ATNLTRTLQDWA----------DRGLRVIGLDAGGDTMLDDLDGSDPLVVVVGSEGK 265

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL+       + ++S P+     SLN S A  +++ E     
Sbjct: 266 GLSRLVRQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQR 307


>gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
 gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
          Length = 335

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 22/165 (13%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDSV 71
             ++ L       N+G V R++  F    + +   R    +  A  +SA   A   +   
Sbjct: 186 PLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARA 245

Query: 72  RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
               NL  A+         +    A             +    L +       V I+ G 
Sbjct: 246 T---NLTRALEQYQKAGLTVVGLAA-------------DGEAELGDLDALEGPVVIVVGS 289

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL+       +  +  P+     SLN   A  ++++E     
Sbjct: 290 EGKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYEAARRR 334


>gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 236

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 23/159 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRV 73
            ++L       N G + R           +V P       + K   +S  +   +  VR 
Sbjct: 82  AVVLDGIADPGNAGTILRTADAAGAQ--AVVFPHGSVDPYNGKCVRASVGSLFHLPVVRG 139

Query: 74  FSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVGIIFGR 127
               +  +A+             R     +LA         +         Q    +FG 
Sbjct: 140 GDTDEHLDAL-------------RAKGLRILAADVRGETDLDAAIDDGLLRQPTAWLFGS 186

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E  GL++     ++  +  P+     SLN++ A  + ++
Sbjct: 187 EAHGLSDALTERADVRVRVPIYGAAESLNLATAAAVCLY 225


>gi|256826939|ref|YP_003150898.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
 gi|256583082|gb|ACU94216.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
          Length = 303

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            R  + + + ++ G E  GL  +   L + +   P+ P   SLN++ A  +  WE  
Sbjct: 245 ARFAACERLALVLGTEGDGLAEQTRMLCDWMARIPMAPGIDSLNVAAASAVAFWETR 301


>gi|313497626|gb|ADR58992.1| TRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida BIRD-1]
          Length = 156

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 24/167 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
            I L +P+  EN+G V RA   +       VN     G   E+AR      D V D+ RV
Sbjct: 8   CIGLFNPKSAENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55

Query: 74  FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++    I DL  I              +   E A  L +     + +  IFG E   L
Sbjct: 56  HYDIPLIGIDDLQRII-----PLGCTPVAVELVEGARPLPDYTHPDRAI-YIFGPEDGSL 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           + E        I  P       +N++  V +++++ M   + +    
Sbjct: 110 SEEVRGWCEETIYIPTEGC---MNLAATVNVVLYDRMAKGLNTRSGP 153


>gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 290

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 19/159 (11%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           ENIG + R      +  +            ++   S     V+     F+ L        
Sbjct: 145 ENIGALFRNAAGMGVDGVVFGAACADPLYRRSVRVSMG--HVL--TVPFATLP------- 193

Query: 86  FIYATTARNRNNFK------SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
               TT   R+  +       V++   A  V          + I+ G E  GLT   +A 
Sbjct: 194 --GTTTTWQRSLDQLKEQGFRVVSMTPAGTVDLWDAMDTDKIAILVGAEGPGLTEHAMAA 251

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           ++     P++P   SLN++ +  +  +E +      + +
Sbjct: 252 TDVRARIPMSPGTDSLNVATSAAIAFYERLRVQSQRAGQ 290


>gi|332702320|ref|ZP_08422408.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552469|gb|EGJ49513.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 262

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 23/146 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G + R ++      L LV P+         A  +SA A   +   RV +NL  A+ 
Sbjct: 114 PGNVGALVRTVYALGGAGL-LV-PKHHAARLGTGALKASAGALLRLPIARV-TNLARALE 170

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +       IY T      N    L P+  A+             ++ G E  G+      
Sbjct: 171 ECAEAGYTIYGTQGEVGENLF-FLEPRLPAV-------------VVLGGEEKGMRPGVAK 216

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLM 164
             +  +  P+   F SLN++QA  L+
Sbjct: 217 RCDFTLRIPLQHGFDSLNVAQAGALI 242


>gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 273

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 16/161 (9%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSV 71
            ++IL   +   N+G + RA     +  + L      + + K   SS  A     ++  +
Sbjct: 119 ILLILDGIRDPGNLGTILRASLAAGVKNVVLTRGTVDYYNPKVLRSSMGAVFSMCILQEI 178

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                          I+A     +N+   V++  E   V  +++     + ++ G E  G
Sbjct: 179 ERPD-----------IWAFC--RQNHLNLVVSALEGQSVYRQKMDQSLPLALVIGSEANG 225

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  E   +S   I  P+     SLN + A  ++++E    +
Sbjct: 226 VAPEFSEISPKKIMIPMQNNVESLNAALAAGILLFEIRRQA 266


>gi|297184491|gb|ADI20605.1| rRNA methylases [uncultured gamma proteobacterium EBAC_27G05]
          Length = 240

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 23/155 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA 82
             N+G   R+    N+  + +        +   R  SA      +++++F  +NL  AI 
Sbjct: 103 PRNLGACIRSAAASNVAGVIINKHHCSPITPLVRQVSAGGT---EAMKIFIVTNLINAIK 159

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   I  T+              E A  ++  +   + +  I G E  G+  + + 
Sbjct: 160 HFEKLGYLILGTS--------------EHAKSMHTELDLNKPILTIIGSEEEGMREKTLE 205

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             + + +   N    SLN+S A  ++++E     +
Sbjct: 206 KCSTVCTLSKNETLNSLNVSVAAGVILFEIARQKL 240


>gi|294891839|ref|XP_002773764.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239878968|gb|EER05580.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 301

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 23/177 (12%)

Query: 15  PVIILV--DPQLGENIGMVARAMWN---FNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           P I+L     Q  +N+G   R +       ++++ L  P    P +      + A    D
Sbjct: 131 PEIVLCLDGLQYTDNVG---RLLKTAWAVGVSRVVL-TPESCDPWDWKVLEESGAK-YWD 185

Query: 70  SVRVFSNLKEAIADLHF--------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            + + + + +A+  L F        + AT++      +    P      LN R    + V
Sbjct: 186 KMPIHTGV-DAVRLLKFCAARQLLPVVATSS---GVGRQGTEPLPTVKKLNVRNAGYRGV 241

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++ G E  G + E +      ++ P++    SLN S A  +++++         EK
Sbjct: 242 MVVVGSEARGPSMELLECCTR-VTLPMSMAADSLNASVAGGVLLYDIALRLQEEEEK 297


>gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
 gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
          Length = 257

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 117 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 174

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L            N        E  +   E   +G +  +I G E  G+  E +A  + 
Sbjct: 175 KL---------KEKNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEVLAKCDQ 224

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 225 NLYIPIYGGAESLNVAVAAGILTY 248


>gi|144899702|emb|CAM76566.1| rRNA methylase (SpoU class) [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 156

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 14/162 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L  P + +N G + R      +  L ++ P      EK    +      +D  RV     
Sbjct: 8   LFQPDIPQNAGALLRLSACLGIP-LEIIEPCGFLWDEKRMRRA--GMDYVDHARVT---- 60

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                         R +   + VL        L+   F   +V I+ GRE  G+  E  A
Sbjct: 61  ------RHASWNAFRQKPGGRLVLLTTAGGTRLDGFSFRPGDV-IMMGRESAGVPPEVAA 113

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            ++  +  P+ P   SLN++ A  L V E +        + +
Sbjct: 114 EADVTVRIPMAPGLRSLNVALAATLAVGEGLRQLRAYPPEEL 155


>gi|313763452|gb|EFS34816.1| conserved domain protein [Propionibacterium acnes HL013PA1]
 gi|313773427|gb|EFS39393.1| conserved domain protein [Propionibacterium acnes HL074PA1]
 gi|313793838|gb|EFS41867.1| conserved domain protein [Propionibacterium acnes HL110PA1]
 gi|313801228|gb|EFS42486.1| conserved domain protein [Propionibacterium acnes HL110PA2]
 gi|313811442|gb|EFS49156.1| conserved domain protein [Propionibacterium acnes HL083PA1]
 gi|313816634|gb|EFS54348.1| conserved domain protein [Propionibacterium acnes HL059PA1]
 gi|313822264|gb|EFS59978.1| conserved domain protein [Propionibacterium acnes HL036PA1]
 gi|313831181|gb|EFS68895.1| conserved domain protein [Propionibacterium acnes HL007PA1]
 gi|313834842|gb|EFS72556.1| conserved domain protein [Propionibacterium acnes HL056PA1]
 gi|314914611|gb|EFS78442.1| conserved domain protein [Propionibacterium acnes HL005PA4]
 gi|314920660|gb|EFS84491.1| conserved domain protein [Propionibacterium acnes HL050PA3]
 gi|314924560|gb|EFS88391.1| conserved domain protein [Propionibacterium acnes HL036PA3]
 gi|314930430|gb|EFS94261.1| conserved domain protein [Propionibacterium acnes HL067PA1]
 gi|314957364|gb|EFT01467.1| conserved domain protein [Propionibacterium acnes HL002PA1]
 gi|314966004|gb|EFT10103.1| conserved domain protein [Propionibacterium acnes HL082PA2]
 gi|314968370|gb|EFT12469.1| conserved domain protein [Propionibacterium acnes HL037PA1]
 gi|314974060|gb|EFT18156.1| conserved domain protein [Propionibacterium acnes HL053PA1]
 gi|314978785|gb|EFT22879.1| conserved domain protein [Propionibacterium acnes HL072PA2]
 gi|314981817|gb|EFT25910.1| conserved domain protein [Propionibacterium acnes HL110PA3]
 gi|315081118|gb|EFT53094.1| conserved domain protein [Propionibacterium acnes HL078PA1]
 gi|315083439|gb|EFT55415.1| conserved domain protein [Propionibacterium acnes HL027PA2]
 gi|315087006|gb|EFT58982.1| conserved domain protein [Propionibacterium acnes HL002PA3]
 gi|315089181|gb|EFT61157.1| conserved domain protein [Propionibacterium acnes HL072PA1]
 gi|315090685|gb|EFT62661.1| conserved domain protein [Propionibacterium acnes HL110PA4]
 gi|315094896|gb|EFT66872.1| conserved domain protein [Propionibacterium acnes HL060PA1]
 gi|315095235|gb|EFT67211.1| conserved domain protein [Propionibacterium acnes HL038PA1]
 gi|315099080|gb|EFT71056.1| conserved domain protein [Propionibacterium acnes HL059PA2]
 gi|315104168|gb|EFT76144.1| conserved domain protein [Propionibacterium acnes HL050PA2]
 gi|315106687|gb|EFT78663.1| conserved domain protein [Propionibacterium acnes HL030PA1]
 gi|315108913|gb|EFT80889.1| conserved domain protein [Propionibacterium acnes HL030PA2]
 gi|327329570|gb|EGE71329.1| rRNA methyltransferase [Propionibacterium acnes HL096PA3]
 gi|327333955|gb|EGE75671.1| rRNA methyltransferase [Propionibacterium acnes HL097PA1]
 gi|327444570|gb|EGE91224.1| conserved domain protein [Propionibacterium acnes HL043PA1]
 gi|327446242|gb|EGE92896.1| conserved domain protein [Propionibacterium acnes HL013PA2]
 gi|328752004|gb|EGF65620.1| conserved domain protein [Propionibacterium acnes HL020PA1]
 gi|328757793|gb|EGF71409.1| conserved domain protein [Propionibacterium acnes HL025PA2]
          Length = 79

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + +  + G E WGL   + AL++ I+  P+     SLN+S A  ++++
Sbjct: 24  RPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLY 71


>gi|289428651|ref|ZP_06430334.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|289158049|gb|EFD06269.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|313807984|gb|EFS46465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA2]
 gi|313819552|gb|EFS57266.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA2]
 gi|313822125|gb|EFS59839.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA1]
 gi|313823641|gb|EFS61355.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA2]
 gi|313825966|gb|EFS63680.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA1]
 gi|314924709|gb|EFS88540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA3]
 gi|314962120|gb|EFT06221.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA2]
 gi|314978998|gb|EFT23092.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA2]
 gi|314986555|gb|EFT30647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA2]
 gi|314990914|gb|EFT35005.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA3]
 gi|315087106|gb|EFT59082.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA3]
 gi|315089280|gb|EFT61256.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA1]
 gi|327329699|gb|EGE71455.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA3]
 gi|327446385|gb|EGE93039.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA2]
 gi|328752374|gb|EGF65990.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL020PA1]
 gi|332675955|gb|AEE72771.1| rRNA methylase family protein [Propionibacterium acnes 266]
          Length = 269

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R           L+ PR   P   +A  +S      +   R+      L E + 
Sbjct: 131 NVGAIIRCAAGIGWDG-VLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGE-LR 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D  F  A            +   E +  L +     + V ++ G E  GL+   I+ ++ 
Sbjct: 189 DHGFTVA----AMELSGDSVTLDEFSADLRQNP---RKVALLMGTEGAGLSAHWISQADV 241

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
           ++  P+     SLN++ A  +  +E  
Sbjct: 242 VVRIPMAGGVDSLNVAAAAAVACYELR 268


>gi|229577450|ref|NP_001153379.1| TAR (HIV-1) RNA binding protein 1 [Mus musculus]
          Length = 1579

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKE 79
              N+G + R    F    L  V         + +  S +A+  +  V V  +     L++
Sbjct: 1432 PTNLGGLCRTCEVFGAAVLV-VGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMNYLQQ 1490

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              A+ + +     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 1491 KKAEGYTVIGVEQTAQSSDLAQ-YRFP--------------EKSLLLLGNEREGIPANLI 1535

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
               +  +  P   +  SLN+  +  L++WE     ++   +  
Sbjct: 1536 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLGCAEPP 1578


>gi|227877757|ref|ZP_03995791.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256843610|ref|ZP_05549098.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256850086|ref|ZP_05555516.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|293380718|ref|ZP_06626766.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
           crispatus 214-1]
 gi|227862660|gb|EEJ70145.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256615030|gb|EEU20231.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256713058|gb|EEU28049.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|290922682|gb|EFD99636.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
           crispatus 214-1]
          Length = 255

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 17/153 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P      + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +L + I D            +    V A     +A  L +       + +I G E  G++
Sbjct: 171 DLADVITDFQ----------DAAIPVYASLLDRSAKQLPD-FEKVPQLALIIGNEAHGIS 219

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +L++  +  P+     SLN + A  +M++
Sbjct: 220 KTIASLADEKLYIPIKGQAESLNAAVAAGIMIY 252


>gi|298252928|ref|ZP_06976722.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297533292|gb|EFH72176.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 233

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 25/186 (13%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M       +     P +    P++  N G   R       T L LV P      +     
Sbjct: 65  MLSADDAARAETHTPHLCFYSPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRR 123

Query: 61  SANADCVIDSVRVF--SNLKEAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +       D   V    N +  +  +    I A TA               A  L   I 
Sbjct: 124 A--GLDYHDMAHVVLHPNFENLVESMPNSRIIAFTA--------------NATKLYTEIE 167

Query: 117 SGQNVGIIFGRERWGLTN--EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENS 172
              N  ++FG E   + +  + +A  +    +  P+ P   SLN++    + V+E     
Sbjct: 168 YKPNDILLFGPEPGDIPDPMDVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQL 227

Query: 173 IVSSEK 178
             +  K
Sbjct: 228 GFTGGK 233


>gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
 gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
          Length = 265

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +    V  NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A S+ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPFAEVTPAG-SFALIVGNEGSGVRQEILAKSDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris
           CGA009]
 gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris TIE-1]
 gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009]
 gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris TIE-1]
          Length = 275

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 15/155 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSV 71
           G V++L       N+G + R+   F +    +V      P      +  ++ A  ++  +
Sbjct: 122 GIVLVLDQITDPHNVGAILRSAAAFAVQ--AIVTTARHSPEATGVLAKSASGALELVP-L 178

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  NL  A+ +L+        +R      L  +         +   Q + ++ G E  G
Sbjct: 179 VLVQNLARALTELN--------DRGFLTVGLDSE--GDDDLAAVELRQPLALVLGAEGKG 228

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           L        N +    +     SLN+S A  L ++
Sbjct: 229 LRQLTRQTCNTVARLDMPGEIKSLNVSNAAALALY 263


>gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 265

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             + G ++I+ + +   N+G + R  W   +  + L+       + K   SS  A     
Sbjct: 105 PESDGLILIVDNLRDPGNLGTILRTAWAAGVDAVFLLKGTVDMYNPKVIRSSMGAVFHFP 164

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                 N  E     H         R     V  PK + +  +   +   NV ++ G E 
Sbjct: 165 VFERVGN-DEVRELCH---------RGYRLVVADPKASLVFTDADYY--GNVAVVIGGET 212

Query: 130 WGLTN--EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            G++   EE+  S   +  P+     SLN + A  ++++E      +  E
Sbjct: 213 AGISAVFEELPASR--VRIPLREGVDSLNAAVACGIILYEAWSQRHLVRE 260


>gi|260103135|ref|ZP_05753372.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|260083045|gb|EEW67165.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
          Length = 255

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P      + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L + I D                   +  +              + +I G E  G+++ 
Sbjct: 171 DLADVITDFQ---------DAAIPVYASMLDKTAKQLPDFEKVPQLALIIGNEAHGVSST 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +LS+  +  P+     SLN + A  +M++
Sbjct: 222 IASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 258

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 15/151 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS-NLKEA 80
           Q   N+G + R           +V+ R     S K   S   +   +   +++  +L + 
Sbjct: 120 QDPGNVGTMVRTADAAGFAG-VVVSHRSADIFSPKVIRSMQGSQFHL---KLYEGDLAKW 175

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I D   + A        + + L P+  +    E    G+   +I G E  G++++ ++ +
Sbjct: 176 IEDFKTVNA------PIYGTQLNPQAKSFRDAE---PGKTFALIMGNEGQGMSDQLLSQT 226

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            A +  P+     SLN++ +  +++++  +N
Sbjct: 227 TANLYIPMRGQAESLNVAVSAGILMFQLNKN 257


>gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 253

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 20/176 (11%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
           + + S + P ++L+      +N G + R+     +  + +   R+  P +     +SA A
Sbjct: 86  EAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVHGIVI-ETRNSCPVTPAVEKASAGA 144

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   RV +    ++E      +++A  A   N  K V    E    +          
Sbjct: 145 VEYMKIARVVNLRRTIEELKEKGIWVFAADA---NGSKPVY---ECDFTI--------PT 190

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            ++ G E  G+T      ++ +I  P      S N S A  ++ +E ++  +   E
Sbjct: 191 CVVIGSEGKGITRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246


>gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 265

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 16/100 (16%)

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++   V   + EA   L  + A                +    L  R    +    +FG 
Sbjct: 174 LELAHVVERVHEA--GLRVVAA--------------DVDGGDFLASRDLLSEPTAWLFGN 217

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           E  GL    +A ++  +  P+     SLN++ A  + ++E
Sbjct: 218 EARGLDEAALAHADLSLRLPIFGRAESLNLATAASVCLYE 257


>gi|306822854|ref|ZP_07456230.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801341|ref|ZP_07695470.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553486|gb|EFM41397.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308222230|gb|EFO78513.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 288

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76
           N+G + R+    ++    LV P  G P   +A   S      I   R+         F+ 
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGEDKHYWPFTG 195

Query: 77  LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++E + DL F   A    + +     L  +               + +IFG E  GL++ 
Sbjct: 196 MRE-LHDLGFTTVAMALEDDSISLDELVRRLNNG--PAETDHIDRLALIFGTEGDGLSHH 252

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I+ ++  +  P++    SLN++ +  +  +
Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|168232176|ref|ZP_02657234.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472133|ref|ZP_03078117.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458497|gb|EDX47336.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333582|gb|EDZ20346.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 345

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPG 311

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           ATCC 17745]
 gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           3_1_44]
 gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           ATCC 17745]
 gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           3_1_44]
          Length = 243

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              I+ G E  G++       + +++ P+     SLN S A  ++++E +      
Sbjct: 188 PTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243


>gi|254786166|ref|YP_003073595.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
           T7901]
 gi|237686905|gb|ACR14169.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
           T7901]
          Length = 228

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 12/159 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+  + R      +  +  V P DG+   +  + ++ +     +V+  S++   + DL  
Sbjct: 32  NLSAITRTCDAVGIDTIHCVMPEDGY---QTYNGTSASAEKWVAVQHHSSISAPVNDL-- 86

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                   R  F+ V A      +    +   +   ++ G E  G++ E  A  +  ++ 
Sbjct: 87  -------KREGFQLVAANLGDNTLDYRNVDYTKPTALVLGAEVKGVSPEAAAAVDYNVTV 139

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           P+  +  S N+S A  +++ E       +   +      
Sbjct: 140 PMVGMVESFNVSVAAAIILMEAQHQRQQAGLYDQPRLTA 178


>gi|114327108|ref|YP_744265.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1]
 gi|114315282|gb|ABI61342.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1]
          Length = 198

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE--CMENSIVSS 176
            N   + G ER  L+   +     ++  P      SLN+S A  L++++           
Sbjct: 106 ANAAYVLGPERSSLSPALLERCTHVVRIPTR---FSLNLSVAGALVLYDRLLQHGRYAER 162

Query: 177 EKNVKEQNTPA 187
                    PA
Sbjct: 163 PVMAGGAAQPA 173


>gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
           Broad-1]
 gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
           Broad-1]
          Length = 262

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 10/163 (6%)

Query: 11  SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
              GP++++  D +   N G V R       + + L        + K   +S  +   + 
Sbjct: 108 DIAGPLVVICADVRDPGNAGTVIRCADAAGASGVILAGDSVDLYNPKTIRASVGSAFHLP 167

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                     A          T    +           A + +      +    + G E 
Sbjct: 168 VAVERD--PVAAVKAAKAAGLTVLAADMHG-------TADLFSADDLLARPTAWLMGNEA 218

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           WGL  E  A ++ I+S P+     SLN+S A  L ++      
Sbjct: 219 WGLPPELAAEADEIVSIPIFGKAESLNLSTAAALCLYASARAQ 261


>gi|283455940|ref|YP_003360504.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|283102574|gb|ADB09680.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
          Length = 288

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76
           N+G + R+    ++    LV P  G P   +A   S      I   R+         F+ 
Sbjct: 137 NVGALMRSAAALDV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTG 195

Query: 77  LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++E + DL F   A    + +     L  +               + +IFG E  GL++ 
Sbjct: 196 MRE-LHDLGFTTVAMALEDDSVSLDELVRRLNNG--PAETDHIDRLALIFGTEGDGLSHH 252

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I+ ++  +  P++    SLN++ +  +  +
Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 267

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 20/149 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI---- 81
           N+G V R+          L+ PR   P   ++   S      +   R+ +   +A     
Sbjct: 131 NVGAVFRSAAALG-ADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRILNWPADAALLKA 189

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTNEEIALS 140
           A  H                LA  + +I L+     + + V +I G E  GL+ + I  +
Sbjct: 190 AGFHLAA-------------LALNDDSIDLDTFAANAPERVALILGTEGDGLSRQTIEAA 236

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECM 169
           ++++  P+     SLN++ A  + ++   
Sbjct: 237 DSVVKIPMMHGVDSLNVAAASAVGMYTLR 265


>gi|283783614|ref|YP_003374368.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis 409-05]
 gi|283441476|gb|ADB13942.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis 409-05]
          Length = 229

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    N +
Sbjct: 81  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLHDTKLRRA--GLDYHDMAHVVLHPNFE 137

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
             +  +    I A TA               A  L   I    N  ++FG E   + +  
Sbjct: 138 NLVESMPNSRIIAFTA--------------NATKLYTEIEYKPNDILLFGPEPGDIPDPM 183

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + +A  +    +  P+ P   SLN++    + V+E       +  K
Sbjct: 184 DVMAGPHVAEQVRLPMRPSLRSLNLTNCASIAVYEAWRQLGFTGGK 229


>gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
          Length = 230

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           + P   A  L E I   S + + ++ G E  GLT   + +S+  +  P++    SLN++ 
Sbjct: 151 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 210

Query: 160 AVLLMVWE 167
           A  L  +E
Sbjct: 211 AAALAFYE 218


>gi|168238343|ref|ZP_02663401.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735064|ref|YP_002115660.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204929676|ref|ZP_03220750.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194710566|gb|ACF89787.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288803|gb|EDY28176.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204321395|gb|EDZ06595.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322613365|gb|EFY10307.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620431|gb|EFY17296.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625101|gb|EFY21930.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629455|gb|EFY26231.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633842|gb|EFY30581.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635448|gb|EFY32159.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639876|gb|EFY36555.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644238|gb|EFY40782.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649930|gb|EFY46350.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654887|gb|EFY51204.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658185|gb|EFY54451.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661743|gb|EFY57961.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669724|gb|EFY65870.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673269|gb|EFY69374.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674942|gb|EFY71029.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682965|gb|EFY78983.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685626|gb|EFY81621.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323191946|gb|EFZ77184.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200421|gb|EFZ85502.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201320|gb|EFZ86387.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208391|gb|EFZ93331.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211534|gb|EFZ96372.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215965|gb|EGA00697.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221746|gb|EGA06154.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225646|gb|EGA09873.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229364|gb|EGA13488.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235321|gb|EGA19405.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237493|gb|EGA21556.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245248|gb|EGA29249.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246473|gb|EGA30454.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253996|gb|EGA37818.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259046|gb|EGA42694.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261969|gb|EGA45534.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267752|gb|EGA51233.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269689|gb|EGA53141.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 345

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDFLPEAAREPG 311

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|330503997|ref|YP_004380866.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328918283|gb|AEB59114.1| RNA methyltransferase, putative [Pseudomonas mendocina NK-01]
          Length = 223

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 29/157 (18%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G + RA   + ++          + +      +   D + D+ +V  
Sbjct: 75  CIGLFNPKSPENVGSIMRAAGCYGVS--------SVFYTGTRYDRAK--DFITDTKKVHQ 124

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----QNVGIIFGRERW 130
           ++    I DL          R        P    +V + R             IFG E  
Sbjct: 125 DIPLINIDDL----------RKILPLGCTPVAVELVDDARALPAYTHPDRALYIFGPEDG 174

Query: 131 GLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVW 166
            L  E +      ++  P       +N++  V ++++
Sbjct: 175 SLQQEILDWCAGEVVYIPT---QGCMNLAATVNVVLY 208


>gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
 gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
 gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
 gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68]
 gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
 gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
 gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0082]
 gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
 gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
 gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
 gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68]
 gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
 gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
 gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0082]
          Length = 254

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +++    N  II G E  G++ E ++L++  +  P+     SLN+  A  ++++
Sbjct: 193 AHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|229015864|ref|ZP_04172832.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region
           [Bacillus cereus AH1273]
 gi|228745426|gb|EEL95460.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region
           [Bacillus cereus AH1273]
          Length = 61

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 124 IFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FGRE  GL    I    +  +  P+     SLN+S    ++++E     
Sbjct: 1   MFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQ 50


>gi|303283456|ref|XP_003061019.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457370|gb|EEH54669.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 219

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 12/154 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  V R+     +  L +V+  D     K    ++        ++ + +  +A+ D  
Sbjct: 60  GNVLAVCRSTEALGIGTLGVVS--DTGLKFKQSGRTSGGAVKWTHLQQWRSTADAVRD-- 115

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                 A+ R  ++ +    E    L E         +I G ER G++ E   L++  + 
Sbjct: 116 ------AKKRG-YRVLTTVFEGGHPL-EHYDWTVPTAVILGNEREGVSEEAKKLADGGVY 167

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             +N    SLN+S A  L++   +++    + K+
Sbjct: 168 VSMNGFTESLNVSVASSLVMHHAVQDRTRRAGKH 201


>gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13]
          Length = 252

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 20/151 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        S K   S+  +   +   R   +LK  I 
Sbjct: 117 QDPGNVGTMIRTADAAGMDMVILGEGCADLYSSKVIRSTQGSIFHLPIAR--GDLKTYIK 174

Query: 83  DL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   +Y T+ +N   F              + + S     +I G E  G+  E + 
Sbjct: 175 QCKELQTPVYGTSLQNGVPF--------------QEVQSSNTFALILGNEGKGMAQEHLE 220

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +++  +  P++    SLN+  A  ++++   
Sbjct: 221 MTDQNLYIPIHGQSESLNVGVAAGILMYYLR 251


>gi|290961783|ref|YP_003492965.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260651309|emb|CBG74431.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 272

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R    L+     L 
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LEAWPKGLD 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144
            +     R+       L P E A  L+E        V ++ G E  GL+ + +  ++  +
Sbjct: 187 AV-----RDAGFTLLALTPDEKAKSLDETAPHRMDRVALMLGAEGDGLSTKALMSADEWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P+     SLN+  
Sbjct: 242 RIPMAHGVDSLNVGA 256


>gi|239946879|ref|ZP_04698632.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921155|gb|EER21179.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 189

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPS------EKARSSSANADCV-IDSVRVFSNLKE 79
           NIG + R +    + +  +V  +   P       ++ + ++ +   +    V++F +   
Sbjct: 38  NIGAIIRNVNALGIKKAYIVTNQKLLPDTWEEMRKEPKLNAISVSDIKWSFVKIFKDTNS 97

Query: 80  AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +  L         T+   +     VL                + + + FG E  G++  
Sbjct: 98  CMDHLEKESFVSVITSPHIKGYKNVVLH--------KHDYTKYKKLAVWFGNEGVGISKT 149

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  S+  I+ P+  +  SLN+  +  ++++E  +  
Sbjct: 150 AVKRSSFCINIPMYGIIESLNLGTSSGIVLYEIAKQR 186


>gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           DSM 2008]
 gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           DSM 2008]
          Length = 243

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              I+ G E  G++       + +++ P+     SLN S A  ++++E +      
Sbjct: 188 PTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQRQAK 243


>gi|195591559|ref|XP_002085507.1| GD12269 [Drosophila simulans]
 gi|194197516|gb|EDX11092.1| GD12269 [Drosophila simulans]
          Length = 407

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 24/182 (13%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
              +L +      ++  + +   N+G + R       +Q+ + +        KA      
Sbjct: 225 EQQRLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCG 284

Query: 64  A--DCVIDSVRVFSNLK-----EAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERI 115
                 I     +  L      EA  D H   A +  R R N +++       +      
Sbjct: 285 GQFRVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGL------ 338

Query: 116 FSGQNVGIIFGRERWGLTNEEIALS-------NAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G +  +I G E  G++ EE              I  P+     SLN++ A+ L+++E 
Sbjct: 339 --GAHNLLIIGGESHGVS-EEAYRFLKLVGGKGKCIYIPLAAGIDSLNVASALTLLLFEL 395

Query: 169 ME 170
             
Sbjct: 396 RR 397


>gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 247

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 16/175 (9%)

Query: 3   PYAPQLQN---SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
           P   +L N       P +IL+    Q   N+G   R+     +  + +        +   
Sbjct: 82  PNHDELLNHVSKLNHPSLILILDSIQDPRNLGACLRSANAAGVDCVVINKDGSAPVNALV 141

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
             +SA A   ++ ++VFS     + +L       A  + +   ++    +      +I  
Sbjct: 142 HKTSAGA---LNQLKVFS-----VTNLSRSI--KALQKQDIW-IIGLDGSTDQSFYQIDL 190

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             ++ I+ G E  GL        + +   P+     SLN+S A  + ++E     
Sbjct: 191 SSSIAIVMGTEGSGLRRLTKQSCDQLAMIPMKGNVESLNVSVATGIALFETSRQR 245


>gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium KLH11]
 gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium KLH11]
          Length = 257

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            + P ++L+       N+G + R+      +   ++  R    + +  + +  A   ++ 
Sbjct: 105 REHPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 161

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIF 125
                  NL +AI +L           N    VL     A    E    G   + V ++ 
Sbjct: 162 QPYLRVRNLADAIVELQ----------NMGFLVLGLDGEADDTIESSLGGDRDRPVALVL 211

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  GL  +     + ++       F SLN+S A  + ++
Sbjct: 212 GAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAAIALY 252


>gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3
           [Phascolarctobacterium sp. YIT 12067]
          Length = 261

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 31/79 (39%)

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R     +L           +      +  + G E  G++   +A ++  +  P+     S
Sbjct: 182 RKAGYELLVTCLDGADNLYKADLQGRLAFVMGNEANGVSPALLAAADKRVFIPMQGRAES 241

Query: 155 LNISQAVLLMVWECMENSI 173
           LN++ A  ++++E +   +
Sbjct: 242 LNVAMAAGIVMFEALRQKL 260


>gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
 gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
          Length = 318

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 30/178 (16%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A    N  +  ++ L       N+G + R++  F      +V      P  +A   +A A
Sbjct: 160 AAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFG-GHGVVV------PERRAAGMTAGA 212

Query: 65  --DCVIDSVRV----FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNER 114
                  + R      +NL  A+         +    A             E  +   E+
Sbjct: 213 WKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG-----------EHTVEDLEQ 261

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +     V I+ G E  GL        +  +   +     SLN   A  ++++E     
Sbjct: 262 LS--GPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317


>gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           GAI101]
 gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           GAI101]
          Length = 264

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P ++L+       N+G + R+      +    V       + +  S + +A   ++ 
Sbjct: 111 AEAPRVLLLDRVTDPHNVGAILRSAEVLGAS---AVIGMRHHAAPETGSLAKSASGALER 167

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIF 125
                  NL ++I +L           N    VL     A +  E    G+    V ++ 
Sbjct: 168 QPYLRVRNLADSIKELQ----------NMGYLVLGLDGEAEITVEAALEGKRDRPVALVL 217

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  GL  +     + ++       F SLN+S A  + ++
Sbjct: 218 GAEGPGLREKTKETVDVLVRIDAEGGFGSLNVSNAAAIALY 258


>gi|212712922|ref|ZP_03321050.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
           30120]
 gi|212684400|gb|EEB43928.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
           30120]
          Length = 370

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 15/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R+  +F +  + L +          R++   A+ +  ID+    + L +   
Sbjct: 231 PHNLGGIMRSCAHFGVKGVILQDAGMLESGAAIRTAEGGAEHIKAIDADGFTTTLDKFRQ 290

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I  T++                     ++   + + ++ G+E  GL++      + 
Sbjct: 291 AGYTIVTTSS-------------HKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDM 337

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +         SLN+S A  +M+ +    
Sbjct: 338 SLYIGGTGKVESLNVSVATGIMLSQWWSQ 366


>gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308374122|ref|ZP_07434956.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308375279|ref|ZP_07443391.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308376535|ref|ZP_07439209.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308377535|ref|ZP_07479580.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308325225|gb|EFP14076.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308331651|gb|EFP20502.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308335372|gb|EFP24223.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308342913|gb|EFP31764.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308346741|gb|EFP35592.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308350655|gb|EFP39506.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308355315|gb|EFP44166.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
          Length = 257

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           + P   A  L E I   S + + ++ G E  GLT   + +S+  +  P++    SLN++ 
Sbjct: 178 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 237

Query: 160 AVLLMVWE 167
           A  L  +E
Sbjct: 238 AAALAFYE 245


>gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 246

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 24/171 (14%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + S K  V+IL   +   N+G + R+     +  + + N R           S  A   +
Sbjct: 91  EQSKKNFVMILDKIEDPHNLGAIIRSAHLSGVDAVIIPNRRSANVDSTVEKVSVGATSYM 150

Query: 69  DSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +RV +NL +AI  L     +IY     N   F + L                 ++ +I
Sbjct: 151 KIIRV-TNLNDAIEKLKKAGLWIYCLDMGNDYYFNTDLT---------------GDIAVI 194

Query: 125 FGRERWGLTNEEIAL--SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            G E  G++  E+    S+ +IS P+     SLN S A  ++++E +   +
Sbjct: 195 VGNEGKGVS--ELIRKNSDFVISIPMLGKIDSLNASVASSIVMFEVLRQRM 243


>gi|301062443|ref|ZP_07203095.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
 gi|300443443|gb|EFK07556.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
          Length = 272

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 24/186 (12%)

Query: 6   PQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P   ++   P   L  P Q   N+G V RA   F + Q+ ++         K+   +   
Sbjct: 102 PPFDDTLYHPGCTLCVPFQDPSNVGAVIRASAAFGVKQIVMLKEAAHPFHPKSLRVAG-- 159

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                           I  + F      R     +  L           R     +  ++
Sbjct: 160 --------------SNIFRVSFFQGPALRQLKKLEIFLIIMSTEGKDAARFEFPDSFCLL 205

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            G E  G+   EI   +  +S P+     SLN + A  ++++        + + N KE  
Sbjct: 206 PGMEGPGIP--EILKGSGNVSIPMAKGVESLNAAMATGIVLYLWR-----NRQFNFKEAV 258

Query: 185 TPATKG 190
            PA   
Sbjct: 259 NPAANA 264


>gi|296282195|ref|ZP_06860193.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 134

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 30/53 (56%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + + FG E+ G+++  +  S A ++ P+  +  SLN++ +  ++++E  +  
Sbjct: 51  KLAVWFGNEKRGISDRAVERSEACVAIPMFGMIESLNLATSSGIVLYEVTKQR 103


>gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio]
          Length = 387

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 24/167 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF- 74
           +L   Q   N+G + R+ +   +   R+V+        +     +SA    V+D   VF 
Sbjct: 229 VLDGVQDPMNLGAILRSAYYLGVD--RIVSSINNSCPLTPTVSKASAGVMEVMD---VFG 283

Query: 75  -SNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            SNLK      + +   +  T      +        ++ ++        +   ++ G E 
Sbjct: 284 CSNLKRMIKVKVEEGWQVVGTVGLEEGSS-------QSNVLSCSDFKMSRPTLLLMGGEG 336

Query: 130 WGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENS 172
            GL++E   L + +I+ P    ++P   SLN+S A  +++   +   
Sbjct: 337 DGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLHSLLSTR 383


>gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA
           methyltransferase 1 homolog (S. cerevisiae) (MRM1)
           [Danio rerio]
          Length = 321

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 24/167 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDSVRVF- 74
           +L   Q   N+G + R+ +   +   R+V+        +     +SA    V+D   VF 
Sbjct: 163 VLDGVQDPMNLGAILRSAYYLGVD--RIVSSINNSCPLTPTVSKASAGVMEVMD---VFG 217

Query: 75  -SNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            SNLK      + +   +  T      +        ++ ++        +   ++ G E 
Sbjct: 218 CSNLKRMIKVKVEEGWQVVGTVGLEEGSS-------QSNVLSCSDFKMSRPTLLLMGGEG 270

Query: 130 WGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENS 172
            GL++E   L + +I+ P    ++P   SLN+S A  +++   +   
Sbjct: 271 DGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLHSLLSTR 317


>gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
           RB2256]
 gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
           RB2256]
          Length = 272

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 11/154 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++   ++ P++IL       NIG V R+   F+   +   +      S     S++ A 
Sbjct: 116 EEVDAESRRPLVILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGAL 175

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  VRV  NL  A+ ++             +  +    +    L E +  G  V ++ 
Sbjct: 176 ETVPWVRVV-NLSRALEEI---------AEAQYWRIGLMGDTETTLGETL-DGSKVALVL 224

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           G E  G+ +  +   + +   P++P   SLNIS 
Sbjct: 225 GSEGDGMRHNVMEHCDVLARLPISPRMESLNISN 258


>gi|20093840|ref|NP_613687.1| RNA-binding protein [Methanopyrus kandleri AV19]
 gi|19886766|gb|AAM01617.1| Predicted RNA-binding protein containing THUMP domain [Methanopyrus
           kandleri AV19]
          Length = 333

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 20/117 (17%)

Query: 39  NLTQLRLVNPRDGWPSEKARSSS---ANADCVIDSVRVFSNLKEAIADLHFIYATTARNR 95
            L  L LV P     +  A   +     A  +ID +R+  +LKEA+A+   +        
Sbjct: 201 GLGSLILVEP-----NRDAVRGAEEKVGASSLID-LRIEEDLKEALAEFDVVVGL----- 249

Query: 96  NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF-PVNPL 151
                  AP   + +L   +     + ++ G E  GL+ E   L++ ++   P    
Sbjct: 250 ----HPTAPNAESELLRA-VEGANQICLLTGSETKGLSREAKELADVLVHLGPTTAE 301


>gi|253742338|gb|EES99175.1| TAR RNA loop binding protein, putative [Giardia intestinalis ATCC
            50581]
          Length = 1676

 Score = 48.9 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKEAI 81
            N+G +AR    F L  L L            ++ S  AD  +    V  +     + E  
Sbjct: 1528 NLGGLARTAEIFGLESLVL-GNASFATDPSFKAMSMTADMWLKIEEVQPHRLIQWIAEKK 1586

Query: 82   ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             D + I      +R+ +              +     Q   ++ G ER G   E ++L +
Sbjct: 1587 KDGYSIVCLEQSSRSVY-------------LQDAELPQKAVLVLGNERNGCPEEILSLCD 1633

Query: 142  AIISFPVNPLFPSLNISQAVLLMVWECM-ENSIVSSEKNVKEQ 183
              +         SLN+  +  + +W+   ++   ++E++V   
Sbjct: 1634 MTVEIQQIGNTRSLNVHVSCAIFIWKWACQHRFATAERSVIPA 1676


>gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118]
          Length = 250

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++I+ T               + A V      +     ++ G E  G+       
Sbjct: 169 LKKRGYWIFGT---------------DMAGVDYREWNANGKTVLVIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I+ P+     SLN S A  +++++   + 
Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAFNSR 246


>gi|310793697|gb|EFQ29158.1| SpoU rRNA methylase [Glomerella graminicola M1.001]
          Length = 588

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 21/175 (12%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           + P    S K  V++L +     N+G + R      ++ + +        +     ++A 
Sbjct: 391 FIPCRPGSPKPLVLLLNEILDPGNLGAILRTARFLGVSAVAITQRTSSAITPTVLKAAAG 450

Query: 64  ADCVIDSVRVFSNLKEAIADLHF----------IYATTARNRNNFKSVLAPKEAAIVLNE 113
           A    + +R+F ++++ +A L              A TA  RN+ +    P+    + + 
Sbjct: 451 AA---EELRLF-SVEDPVAFLDASQKAGWASYAAVAPTAGLRNDSRQW-TPE---GIEDA 502

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMV 165
           +  + +   +I G E  GL  +    ++  I+ P   ++    SLN+S A  L+ 
Sbjct: 503 KPLTKEPTILILGNEGSGLPYDIRKKASREITIPRMVMSSSVDSLNVSVATALLC 557


>gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
           5501]
 gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
           5501]
          Length = 268

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           Q   ++ G E  G   E + L++  +  P++    SLN + A  ++++E +     + 
Sbjct: 211 QPTALVIGNEGAGAQPETLKLADKKVKIPLSEGIDSLNAAIASGIIMYEMVRQRKNNP 268


>gi|219684874|ref|ZP_03539816.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
 gi|219671819|gb|EED28874.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
          Length = 218

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             + + FG E  GL+ E    ++  +  P+     S NIS AV ++++  
Sbjct: 127 NKMAVFFGTELTGLSAEAFEAADLYLKIPMYGFTQSYNISVAVAIVMYSL 176


>gi|194445716|ref|YP_002041915.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404379|gb|ACF64601.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 345

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKIVLVLGREYDYLPEAAREPD 311

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|149195840|ref|ZP_01872897.1| spoU protein [Lentisphaera araneosa HTCC2155]
 gi|149141302|gb|EDM29698.1| spoU protein [Lentisphaera araneosa HTCC2155]
          Length = 233

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 19/163 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CV--ID 69
           +   ++L +     N   + R    F +  + ++   + + + K  S SA+    +   +
Sbjct: 41  EHICLVLENLYQEHNASAILRNADAFGIQNINVIENDNDFAANKEVSMSAHKWLDIKAWN 100

Query: 70  SVRVFSNLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             ++ + +K   A+    + I AT+ R  +                + +   + + + FG
Sbjct: 101 ESKIDNTVKCLSALKKQGYKICATSLRPESIT-------------LDELPVDEPIALCFG 147

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            E  GL+     +++ +   P+N    S N+S A  L +    
Sbjct: 148 TELTGLSEVAHEMADYMTYIPMNGFIQSFNVSVASALSLSHLR 190


>gi|148546546|ref|YP_001266648.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1]
 gi|148510604|gb|ABQ77464.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1]
          Length = 156

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 24/154 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
            I L +P+  EN+G V RA   +       VN     G   E+AR      D V D+ RV
Sbjct: 8   CIGLFNPKSAENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55

Query: 74  FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++    I DL  I              +   E A  L +     + +  IFG E   L
Sbjct: 56  HYDIPLIGIDDLQRII-----PLGCTPVAVELVEGARPLPDYTHPDRAI-YIFGPEDGSL 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + E        I  P       +N++  V ++++
Sbjct: 110 SEEVRGWCEETIYIPTEGC---MNLAATVNVVLY 140


>gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
           'sapolanicus']
 gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
           'sapolanicus']
          Length = 267

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 21/161 (13%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSV---R 72
           L   Q   N+G + R         +  +       ++K   +S     A  +   V    
Sbjct: 121 LDRIQDPGNMGTMIRTAAAAGFEAVIALKGSVDIYNQKVIRASMGGIFAIPIWQKVSKNE 180

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +LK+  AD   + A     + +F+                   Q + ++ G E  GL
Sbjct: 181 FKKDLKDRAADFELLAADIKAEKYHFEH---------------QYQQKLILMIGNEANGL 225

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             + + +++  +  P+     SLN + A  ++ +E +   +
Sbjct: 226 AEDLLNIADMKVKIPLKGEMESLNAAIAAAVISFEILAQQL 266


>gi|297624394|ref|YP_003705828.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297165574|gb|ADI15285.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 276

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             LQ +A   V+++   +   N+G + R         +        + +     SS  + 
Sbjct: 117 RDLQLAADALVLVVDGLEKPGNLGALLRTADGVGAAAVFATGAGTDFENPNVIRSSMGSV 176

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +        L+   A+L       A  R     ++A    A  L           ++ 
Sbjct: 177 FSL------PTLRAPAAELL------AWLRAQGFRLVAATPHADTLFWDAPYTGRTALLL 224

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E  GL+   +  ++  ++ P+  L  SLN++ A  L+++E +      + 
Sbjct: 225 GTEHDGLSALWLEAADVRVTIPMGGLADSLNVATAGALLLYEALRQRRRRAP 276


>gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
 gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
          Length = 259

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 19/167 (11%)

Query: 11  SAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--- 65
              GP +  IL   Q   N+G + RA     +T + + +      + K   S+  +    
Sbjct: 105 DRPGPALLMILDTIQDPGNLGTILRAGEGAGITGVIMNDTTADIYNPKVIRSTMGSVCRV 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             + +  +   L         +YA     RNN+              E+     + G + 
Sbjct: 165 PFVYTAALPQTLANIKKRGVRLYAAHLEGRNNY--------------EKEDYTVDTGFLI 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL++E  ++++A +  P+     SLN + A  ++++E     
Sbjct: 211 GNEANGLSSETASMADAYVKIPMMGKVESLNAAVAASVLMFEAARQR 257


>gi|212704886|ref|ZP_03313014.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
 gi|212671728|gb|EEB32211.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
          Length = 261

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 17/163 (10%)

Query: 8   LQNSAKGP---VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSA 62
           LQ +A+ P   V+ L   Q   N+G + R ++      + L  PR    +    A  ++A
Sbjct: 102 LQAAAEAPLPLVVALDQVQDPGNVGTLCRTLYALGGAGVIL--PRHNSAYLGPAAHRAAA 159

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +   RV +NL  A+ +       +              E A+ L           
Sbjct: 160 GALERLPVARV-TNLAHALDEAEEA-GFSIYGAGCGPDAADAFEHAMQL--------PAV 209

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           ++ G E  GL          ++  P+   F SLN++QA  +++
Sbjct: 210 LVLGNEDKGLRPGVAKRCGRMLRIPLARKFDSLNVAQAGAILL 252


>gi|282890164|ref|ZP_06298694.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499821|gb|EFB42110.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 253

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 64/171 (37%), Gaps = 23/171 (13%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVR 72
              I L   +   N+G + R +  F+L  L   +P        + + ++       + V 
Sbjct: 103 SIAIYLDSIRSAFNVGSIIRTVEAFSLGSLYF-SPETPCVEHSQVQKTAMGTS---EWVT 158

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERW 130
            F ++   + DL              K ++A +    AI + + +F  +   ++ G E +
Sbjct: 159 CFKDIP--LTDL-------------PKPIIALETSPCAISIYDFVFP-EVFSLVLGNEEY 202

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           G +   +  ++ ++  P+     SLN++ A  +   E      +    + +
Sbjct: 203 GCSEATLKQADFLLQIPLCGRKNSLNVANAFAIAAGEIRRQKKLRIHHDEE 253


>gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 272

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R    L      L 
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LDAWPKGLE 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144
            +     R        L P E A  L+E        V ++ G E  GL+   +A ++  +
Sbjct: 187 AV-----REAGFTLLALTPDEKARSLDEAAPHRMDRVALMLGAEGDGLSTRALAAADEWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P++    SLN+  
Sbjct: 242 RIPMSHGVDSLNVGA 256


>gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1]
 gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1]
          Length = 244

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 13/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANAD 65
           + Q+     ++IL   +  +N G + R    FN+  L + N R     +     +S+ A 
Sbjct: 87  EFQHKNNILILILDSIEDPQNFGAILRTAEQFNI-DLVITNQRKSVKDNATVLRTSSGAS 145

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             ++ + V  N+   I             +     + A       +N    +   + +I 
Sbjct: 146 QYVNKLTV-PNINNVIR----------YLKKQGFWIYASDIKGQAINNTKITDNKIALIM 194

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  G+ N     S+ +I  P      SLN+S +  ++++E    
Sbjct: 195 GNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQ 240


>gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 252

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79
           Q   N+G + R       + + L+       S K   S   ++  +   R+    +E   
Sbjct: 119 QDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVMRSMQGSNFHLAIARMNE--EECFA 176

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A+        TT               +A  ++ +     +  ++ G E  G+++  +  
Sbjct: 177 ALKQAKISILTTT-------------LSANSVSYKTVEESSFALVMGNEGAGVSDFAVES 223

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++ ++   +     SLN++ A  ++++  
Sbjct: 224 ADKLVHIDMPGQAESLNVAVAAGILMFSL 252


>gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680]
 gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680]
          Length = 272

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R+     + +    
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARL-DTWPKGLE--- 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144
                + R        L P E A  L+E        V ++ G E  GL+ + +  ++  +
Sbjct: 187 -----SVREAGFNLLALTPDEKAKTLDETAPHKMDRVALMLGAEGDGLSTQALVAADEWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P+     SLN+  
Sbjct: 242 RIPMAHGVDSLNVGA 256


>gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus
           leucogenys]
          Length = 353

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 31/201 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N G V R+     + +  + + R+  P +     SSA A  V+D   VFS 
Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKSSAGAMEVMD---VFST 204

Query: 77  ------LKEAIADLHFIYATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRE 128
                 L+        +  T         S   P+  E  I         +   ++ G E
Sbjct: 205 DDLTGFLQTKAQQGWLVAGTVG-----CPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNE 259

Query: 129 RWGLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENS-----IVSSE 177
             GL+ E  A    +++       P  P   SLN+S A  +++                 
Sbjct: 260 GSGLSQEVQASCQLLLTILPRRQLP--PGLESLNVSVAAGILLHSICNQRKGFPTEGERR 317

Query: 178 KNVKEQNTPATKGELLSFLDY 198
           + +++   P+ + E LS   +
Sbjct: 318 QLLQDPREPSARSEGLSMAQH 338


>gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 317

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 10/159 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ++ L       N+G V R++  F      +V      P  +A   +A A     S   
Sbjct: 168 PLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAGAWKT--SAGT 218

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +    A A  +   A  A  +     V    +    +         V I+ G E  GL+
Sbjct: 219 AARTPVARA-TNLTRALEAYKKAGLMVVGLDADGDTEVQNAEVLDGPVVIVAGSEGKGLS 277

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  + ++  P+     SLN   A  ++++E + + 
Sbjct: 278 RLVAETCDVLVRIPMPGGAESLNAGVATGVVLYEVVRHR 316


>gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 252

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79
           Q   N+G + R       + + L+       S K   S   ++  +   R+    +E   
Sbjct: 119 QDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVMRSMQGSNFHLAIARMNE--EECFA 176

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A+        TT               +A  ++ +     +  ++ G E  G+++  +  
Sbjct: 177 ALKQAKISILTTT-------------LSANSVSYKTVEESSFALVMGNEGAGVSDFAVES 223

Query: 140 SNAIISFPVNPLFPSLNISQAVLLM 164
           ++ ++   +     SLN++ A  ++
Sbjct: 224 ADKLVHIDMPGQAESLNVAVAAGIL 248


>gi|255030658|ref|ZP_05302609.1| hypothetical protein LmonL_18963 [Listeria monocytogenes LO28]
          Length = 126

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 119 QNVGIIFGRERWGLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++   +FG+E  GL       NEE       +  P+     SLN+S    ++ +E +   
Sbjct: 54  KDYFFVFGKETTGLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 108


>gi|255017825|ref|ZP_05289951.1| hypothetical protein LmonF_08965 [Listeria monocytogenes FSL
           F2-515]
          Length = 81

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 119 QNVGIIFGRERWGLT------NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++   +FG+E  GL       NEE       +  P+     SLN+S    ++ +E +   
Sbjct: 9   KDYFFVFGKETTGLPDALLQENEE-----NCLRIPMTDHIRSLNLSNTAAILAYEALRQQ 63


>gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 18/162 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           + IL   +   N+G + R         + +   R    +     +SA A       +V +
Sbjct: 102 IFILDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTN 161

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               ++E   +  +                       V+      G  +G++ G E  G+
Sbjct: 162 IAQTIEELKKEGMWFVCAA--------------MDGEVMYNLDLKG-PIGLVIGAEGEGV 206

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +       +   S P+     SLN S A  ++ +E +   ++
Sbjct: 207 SRLVREKCDFTASIPMKGNIDSLNASVAAGVLAYEIVRQRML 248


>gi|111017974|ref|YP_700946.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110817504|gb|ABG92788.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 269

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 12/86 (13%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGRERWGLTNEEIALS 140
           R R+    + +   A I L      G+                +FG E  GL     A +
Sbjct: 171 RERDTAAVLDSISAAGIQLLATAADGEVDLDDADELLARPTAWLFGNEAHGLDAATSARA 230

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
           +  +  P++    SLN++ A  + ++
Sbjct: 231 DHRVRIPIHGRAESLNLATAASICLY 256


>gi|15601385|ref|NP_233016.1| rRNA methylase, putative [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153819784|ref|ZP_01972451.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457]
 gi|227812194|ref|YP_002812204.1| putative rRNA methylase [Vibrio cholerae M66-2]
 gi|229506208|ref|ZP_04395717.1| rRNA methylase [Vibrio cholerae BX 330286]
 gi|229509934|ref|ZP_04399414.1| rRNA methylase [Vibrio cholerae B33]
 gi|229516505|ref|ZP_04405952.1| rRNA methylase [Vibrio cholerae RC9]
 gi|229605747|ref|YP_002876451.1| rRNA methylase [Vibrio cholerae MJ-1236]
 gi|254849785|ref|ZP_05239135.1| 23S rRNA methyltransferase [Vibrio cholerae MO10]
 gi|255746599|ref|ZP_05420546.1| rRNA methylase [Vibrio cholera CIRS 101]
 gi|262158809|ref|ZP_06029922.1| rRNA methylase [Vibrio cholerae INDRE 91/1]
 gi|298499432|ref|ZP_07009238.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757]
 gi|9658040|gb|AAF96528.1| rRNA methylase, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126509683|gb|EAZ72277.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457]
 gi|227011336|gb|ACP07547.1| putative rRNA methylase [Vibrio cholerae M66-2]
 gi|229346386|gb|EEO11357.1| rRNA methylase [Vibrio cholerae RC9]
 gi|229352379|gb|EEO17319.1| rRNA methylase [Vibrio cholerae B33]
 gi|229356559|gb|EEO21477.1| rRNA methylase [Vibrio cholerae BX 330286]
 gi|229372233|gb|ACQ62655.1| rRNA methylase [Vibrio cholerae MJ-1236]
 gi|254845490|gb|EET23904.1| 23S rRNA methyltransferase [Vibrio cholerae MO10]
 gi|255736353|gb|EET91751.1| rRNA methylase [Vibrio cholera CIRS 101]
 gi|262029382|gb|EEY48033.1| rRNA methylase [Vibrio cholerae INDRE 91/1]
 gi|297541413|gb|EFH77464.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 170

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           VII L +P+   N+G V RA   +N TQ+R         +    + +        +S   
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++  + DL      TA   +  K V                 +    +FG E   L 
Sbjct: 59  IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E +  ++ ++  P +     +N++  V +++++ +  S+   +   +
Sbjct: 111 QEVVDQAHYVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155


>gi|297195464|ref|ZP_06912862.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152803|gb|EFH31995.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 272

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R    L      L 
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LDAWPKGLE 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144
            +     R        L P E A  ++E      + V ++ G E  GL+ + +  ++  +
Sbjct: 187 AV-----REAGFRLLALTPDEKATSIDEAAPHRLERVALMLGAEGDGLSTKALMAADEWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P++    SLN+  
Sbjct: 242 RIPMSHGVDSLNVGA 256


>gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
           29176]
 gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
           29176]
          Length = 270

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           ++IL + +   N+G + R         + +   R    +     +SA A       +V  
Sbjct: 121 ILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTN 180

Query: 74  -FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               ++E     L F+ A                     +     +G  +G++ G E  G
Sbjct: 181 LVKTMEELKEKGLWFVCA---------------DMDGEPMYHLNLTG-PIGLVIGNEGEG 224

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++       + +   P+     SLN S A  ++ +E +   I+  +
Sbjct: 225 VSRLVKENCDFVAGIPMKGQINSLNASVAAGVLAYEIVRQRIIKGQ 270


>gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 256

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 31/191 (16%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A          +++L   +   N+G + R+        + +   R    +     +SA A
Sbjct: 87  ARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALGSHGVVIPRDRAVGVTPAVAKASAGA 146

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---- 120
              ++   V                  AR  N  K++   KEA I        G+     
Sbjct: 147 ---VERCPV------------------ARVTNVAKTLERLKEAGIWSVALAADGERPLGE 185

Query: 121 ------VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                   ++ G E  G+        +     P++    SL++S +  + ++E       
Sbjct: 186 VDLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAARQRAG 245

Query: 175 SSEKNVKEQNT 185
           +  K+  E   
Sbjct: 246 TPSKSAVEMRP 256


>gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
          Length = 242

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           + P   A  L E I   S + + ++ G E  GLT   + +S+  +  P++    SLN++ 
Sbjct: 163 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVAT 222

Query: 160 AVLLMVWE 167
           A  L  +E
Sbjct: 223 AAALAFYE 230


>gi|312868274|ref|ZP_07728474.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
           F0405]
 gi|311096019|gb|EFQ54263.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
           F0405]
          Length = 181

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSA 62
             P+L +  +G  + L D Q   N+G + R         + L     D +  +  RS   
Sbjct: 25  EQPELPDQLQGRFLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSMQG 84

Query: 63  NADCV----IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +   +    +D   +   L+ A      + ATT                A +   ++   
Sbjct: 85  SHFHIPIWKLDREEL---LERATQSHLAVLATTLSE-------------ASIDYRQLPQT 128

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
               ++ G E  G++ E  A ++ ++  P+     SLN++ A  ++++   +
Sbjct: 129 DRFILVMGNEGNGISQEMAAQADQLVHIPMPGRAESLNVAVAAGILMFSLRK 180


>gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
           E980]
 gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
           E980]
          Length = 254

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +++    N  II G E  G++ E ++L++  +  P+     SLN+  A  ++++
Sbjct: 193 AHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
           14600]
 gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
           14600]
          Length = 246

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 20/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS---NLKE 79
           +   N+G + R         + +   R    +     +SA A       +V +    ++E
Sbjct: 107 EDPHNLGAIIRTANLAGAHGVIIPKNRAAGLTATVAKASAGAINYTPVAKVTNLSRTMEE 166

Query: 80  AI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                L F+ A                    V+ +   +G  +G++ G E  G+ +    
Sbjct: 167 LKKEGLWFVCA---------------DMDGQVMYDLNLTG-PIGLVIGNEGSGVGDLVRK 210

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   + P+     SLN S A  ++ +E +   
Sbjct: 211 HCDLFAAIPMAGEIDSLNASVAAGVLAYELVRQR 244


>gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 253

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 67/176 (38%), Gaps = 20/176 (11%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA 64
           + + S + P ++L+      +N G + R+     +  + +   R+  P +     +SA A
Sbjct: 86  EAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVHGIVI-ETRNSCPVTPAVEKASAGA 144

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   RV +    ++E      +++A  A   N  K V    E    +          
Sbjct: 145 VEYMKIARVVNLRRTIEELKEKGIWVFAADA---NGSKPVY---ECDFTI--------PT 190

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            ++ G E  G++      ++ +I  P      S N S A  ++ +E ++  +   E
Sbjct: 191 CVVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQRLKEGE 246


>gi|312868681|ref|ZP_07728874.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
 gi|311095795|gb|EFQ54046.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
          Length = 289

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 24/168 (14%)

Query: 11  SAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
               P I IL       NIG + R+     +  + + +        ++   S      I 
Sbjct: 129 PNPHPRIAILERVVNPANIGAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQIP 188

Query: 70  SVRVFSNLKEA----IADLHFI----YATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +     +A    +  +  +    Y T A   R+N   +  P+         +     
Sbjct: 189 WTYI-----DAKTWHMEGIDLLHRFGYQTAAMALRHNTIRIDDPR---------LAKLDK 234

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + II G E  GL  + I  S+  I  P+     SLN++ A  L  WE 
Sbjct: 235 LAIILGSEGPGLEEQTITQSDFTIKIPMAVGVDSLNVAAASALAFWEL 282


>gi|225351944|ref|ZP_03742967.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157191|gb|EEG70530.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 288

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 15/151 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---------FSN 76
           N+G + R+    N+    LV P  G P   +A   S      I   R+         F+ 
Sbjct: 137 NVGALMRSAAALNV-DAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTG 195

Query: 77  LKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++E + DL F   A    + +     L  +       +       + +IFG E  GL++ 
Sbjct: 196 MQE-LRDLGFTTVAMALEDDSISLEELVRRLNNDNGEKDHID--KLALIFGTEGDGLSHH 252

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I+ ++  +  P++    SLN++ +  +  +
Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFY 283


>gi|78185098|ref|YP_377533.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
 gi|78169392|gb|ABB26489.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
          Length = 279

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 34/179 (18%)

Query: 18  ILVDPQLGENIGMVARAMWN-------FNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +L   Q   N+G + R+                  V+P  G    K   +SA A   +  
Sbjct: 117 VLDRIQDPGNLGSLLRSALAADVQSVWMGSG----VDPLGG----KVLRASAGALLQLPH 168

Query: 71  VRVFSNLKEAIADLHF-----------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            R     ++AI DL             + AT   + +     +   E        +   +
Sbjct: 169 RRFGPEQEKAIDDLDQALRVLVAQGIQVVATLVPDASGPLPPIPYWE--------LDWTK 220

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
              ++ G E  GL     A     ++ P +    SLN++ A + ++ E     +V +++
Sbjct: 221 PTALVLGTEGAGLHPRLQACCTHAVTLPHSSRVESLNVAAAAVPLLLERRRARMVGTQQ 279


>gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12]
 gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
 gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12]
 gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
          Length = 254

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +++    N  II G E  G++ E ++L++  +  P+     SLN+  A  ++++
Sbjct: 193 AHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 246

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             + I+ G E  G+        + +I  P+     SLN+S A  + ++E +   + +
Sbjct: 190 GPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVRQRMAN 246


>gi|284931714|gb|ADC31652.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           F]
          Length = 260

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 72/171 (42%), Gaps = 29/171 (16%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWP--SEKARSSS 61
            +++N  +G V++L       N G + R+    N     L ++  +D     +     +S
Sbjct: 102 EKIKNEQQGIVVVLDQIHDPGNFGGILRSCLAANV----LGVIFKKDNQASINNTVIKTS 157

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117
             A   ++ + V +NL  AI DL         ++  F S ++       L+++       
Sbjct: 158 LGACFYLNLIEV-ANLSYAIKDLQ--------DKYGFWSYVS------NLSDQAQDYNVD 202

Query: 118 -GQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVW 166
                 +I G E+ G++++ I  ++  I  P+      SLN+S A  +M++
Sbjct: 203 YANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNVSVATGIMLF 253


>gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
 gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
          Length = 247

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 16/148 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
               N+G + R    FNL+ + +        + K   ++  +   I  V ++      + 
Sbjct: 116 SDAGNMGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMAS---IFRVPIY-----FLK 167

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +   I       +NNFK +++  E +  + E   SG  + ++ G E  G++ + +  +N 
Sbjct: 168 EDELI-------KNNFKIIVSALEDSKPIKECDLSGDLI-LVIGNEAHGVSQKILERANL 219

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            +  P+     SLN   A  +  +E  +
Sbjct: 220 KVKIPIRDSVDSLNAGVAAGIFAYEMSK 247


>gi|297587755|ref|ZP_06946399.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297574444|gb|EFH93164.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 234

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 14/153 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL       N+G + R+M  F    L L++      + K   +S  A   + +++ F N
Sbjct: 94  IILDGIDNMGNLGTIMRSMLGFGYKDLALISNTCDVYNPKVVRASMGAFFKL-NIQRFDN 152

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L++   +            N   S L   E++  L +  F  Q   + FG E  GL  E 
Sbjct: 153 LQDYKKNF---------PENKIYSFLL-DESSDELGDVKFE-QPFSLAFGNEGAGLPQE- 200

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              +   I    +    SLN+  A  + +++  
Sbjct: 201 -YYNENKIFINQSKDVDSLNLPIACSIAMYQSR 232


>gi|31544882|ref|NP_853460.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541729|gb|AAP57028.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930958|gb|ADC30897.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(high)]
          Length = 260

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 29/171 (16%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAM--WNFNLTQLRLVNPRDGWP--SEKARSSS 61
            +++N  +G V++L       N G + R+    N     L ++  +D     +     +S
Sbjct: 102 EKIKNEQQGIVVVLDQIHDPGNFGGILRSCLAANV----LGVIFKKDNQVSINNTVIKTS 157

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---- 117
             A   ++ + V +NL  AI DL   Y         F S ++       L+++       
Sbjct: 158 LGACFYLNLIEV-ANLSYAIKDLQEKYG--------FWSYVS------NLSDQAQDYNVD 202

Query: 118 -GQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVW 166
                 +I G E+ G++++ I  ++  I  P+      SLN+S A  +M++
Sbjct: 203 YANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNVSVATGIMLF 253


>gi|66044814|ref|YP_234655.1| hypothetical protein Psyr_1569 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255521|gb|AAY36617.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|330900092|gb|EGH31511.1| hypothetical protein PSYJA_22049 [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330974095|gb|EGH74161.1| hypothetical protein PSYAR_26774 [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330982587|gb|EGH80690.1| hypothetical protein PSYAP_29228 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 166

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +           + + K    +   D + D+ ++  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   + A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIEDLKSIL-----PLGCIPVAVELVDGARALPEYTHPDRAL-YIFGPEDGSLDQ 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           E       ++  P       +N++  V +++++ M   I   S  +  +E+  PA+ 
Sbjct: 112 EIRDWCEDVVYIPTE---GCMNLAATVNVVLYDRMAKGINTRSGPQFGREKIDPASD 165


>gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
           ES-2]
 gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
           ES-2]
          Length = 258

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 16/154 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q   N+G + R+        + L +P      S K   ++      +         K A 
Sbjct: 120 QDPGNLGSMLRSAAAAGCDAVFL-SPACADAWSPKVLRAAMGGHFCLAIYEQQDLFKVAQ 178

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                + ATT                A           N+  + G E  GLT E  AL+ 
Sbjct: 179 GYSGKLLATT--------------LQATDSLFDCDLTGNIAFMVGNEGAGLTPELRALAT 224

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             ++ P+     SLN + A  + ++E +      
Sbjct: 225 HPVTIPMPGAVESLNAAAATAICLFEAVRQRRAP 258


>gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
           8239]
 gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
           8239]
          Length = 257

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 13  KGPVIILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            G +++LVD  Q   N+G + R         + +        ++K   S+  +   I   
Sbjct: 107 SGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP-- 164

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  +       L F+    +  +  +K V++  +      E    G  V I  G E  G
Sbjct: 165 -IVED-----DSLDFV---KSLKKEGYKLVVSSLQGKNNFFEENLQG-KVMIAVGNEGNG 214

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++++   +++  +  P+     SLN++ A  +M++E +  S
Sbjct: 215 VSDKVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQS 255


>gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155
 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 310

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 11/163 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           ++    ++ L +     N+G + R++  F    + +   R    +  A  +SA A   + 
Sbjct: 157 DTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMP 216

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R  +NL  A+ D            +    V+          + +     + ++ G E 
Sbjct: 217 VAR-ATNLTRALKDWA----------DRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEG 265

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+       + ++S P+     SLN S A  +++ E     
Sbjct: 266 KGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVVLAEIARQR 308


>gi|56412529|ref|YP_149604.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361464|ref|YP_002141100.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126786|gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092940|emb|CAR58370.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 345

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 311

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|320667558|gb|EFX34478.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
          Length = 345

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 18/166 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV 67
           Q  A+  V++L +     N+G + R+  +F +    +V       S  A  ++   A+ V
Sbjct: 192 QAGAQDCVLVLENESNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHV 250

Query: 68  --IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             I    + + L +     + +  T++      K +            +      + ++ 
Sbjct: 251 QPITGDNIVNVLDDFRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVL 296

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G+E  GL +     ++  +          LNIS A  +++ E    
Sbjct: 297 GQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|168468062|ref|ZP_02701899.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195628860|gb|EDX48274.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 345

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 311

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
 gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
          Length = 318

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 63/171 (36%), Gaps = 11/171 (6%)

Query: 7   QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +NS + P+ + L       N+G V R+   F            G    + RS+   A 
Sbjct: 156 AARNSGEVPLFVALDGVTDPRNLGAVIRSAAAFGAH---------GVLLPERRSAGMTAV 206

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
               S    + L  A+A  +      A   +    V    + ++ ++E   +   + I+ 
Sbjct: 207 AWRTSAGTAAKLPIAVA-TNLTRQLKAWANDGLMLVGLDADGSVDIDELELAADPLVIVL 265

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  GL+       +A +S P+     SLN S A  +++ E      ++ 
Sbjct: 266 GSEGRGLSRLVRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRRRLAG 316


>gi|308235365|ref|ZP_07666102.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis ATCC 14018]
 gi|311115095|ref|YP_003986316.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310946589|gb|ADP39293.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 227

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    N +
Sbjct: 79  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLQDTKLRRA--GLDYHDMAHVVMHPNFE 135

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
             +  +    I A TA               A  L   I    N  ++FG E   + +  
Sbjct: 136 NLVESMPNSRIIAFTA--------------NATKLYTDIEYKPNDILLFGPEPGDIPDPM 181

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + +A  +    +  P+ P   SLN++    + ++E          K
Sbjct: 182 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFEGGK 227


>gi|310286958|ref|YP_003938216.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium
           bifidum S17]
 gi|309250894|gb|ADO52642.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium
           bifidum S17]
          Length = 215

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 27/160 (16%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F+
Sbjct: 67  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFN 123

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN- 134
           NL E++ D   I A TA               A  L   +       ++FG E   + + 
Sbjct: 124 NLVESMPD-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEPGDIPDP 168

Query: 135 -EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +A  +    +  P+ P   SLN++    + ++E    
Sbjct: 169 MDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 208


>gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 245

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA---- 82
           N G + R      ++ + +        +  A  +SA A   I   +V  ++K+AI     
Sbjct: 110 NFGAIVRTAECTGVSAIIISKTGSAPITADAVKTSAGAIFNIPICKV-DHIKDAIYYLQS 168

Query: 83  -DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            D+  + AT   +   +   L                 +  +I G E  G+    + + +
Sbjct: 169 CDVKIVAATEKTDNTIYDVPLT---------------GSHALIMGSEGRGINPSVLKIVD 213

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                P+     SLN+S A    ++E +   
Sbjct: 214 YKAKLPLLGKIESLNVSVATGAFLYEAIRQR 244


>gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis F11]
          Length = 288

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 102 LAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           + P   A  L E I   S + + ++ G E  GLT   + +S+  +  P++    SLN++ 
Sbjct: 209 MTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALWISDVRVRIPMSRGTDSLNVAT 268

Query: 160 AVLLMVWE 167
           A  L  +E
Sbjct: 269 AAALAFYE 276


>gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 249

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           P+++L       N+G + R+   F+   +   +      S     S++ A   +  VRV 
Sbjct: 102 PIVLLDQVTDPHNVGAILRSAAAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVV 161

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL  A+ DL             F  +    EA + L E I +G  V ++ G E  GL +
Sbjct: 162 -NLARALDDL---------AERGFWRIGLAGEAEMTLAEAIPTG-PVALVLGAEGAGLRH 210

Query: 135 EEIALSNAIISFPVNPLFPSLNISQ 159
                 +A+   P++    SLN+S 
Sbjct: 211 NIAGHCDALAKLPISDAIESLNVSN 235


>gi|156547687|ref|XP_001604773.1| PREDICTED: similar to TAR RNA loop binding protein [Nasonia
            vitripennis]
          Length = 1450

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 68/175 (38%), Gaps = 25/175 (14%)

Query: 10   NSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
            N+ +  V++  L++    +N+G +AR    F + QL  V+       ++ +  S +AD  
Sbjct: 1293 NNKQDIVVVASLIE--KSQNLGGIARTCEIFGVKQLV-VSNLKQIEDKEFQVLSVSADKW 1349

Query: 68   IDSVRVFSNLKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNV 121
            I  + V  +   A     + D                +++  ++ A  +N   +   +  
Sbjct: 1350 IKIIEV-KSFSLANYLLELKDC-------------GWTLIGAEQTANSVNLYDLKYPKQT 1395

Query: 122  GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             ++ G E+ G+    I L +  +      +  SLN+     + +WE ++      
Sbjct: 1396 VLVLGNEKNGIPANIIPLLDMCVEISQFGVIRSLNVHVTSAICIWEYVKQYQFEP 1450


>gi|317123375|ref|YP_004097487.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315587463|gb|ADU46760.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 288

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%)

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +L+  +     V I  G E+ G+ +  +  +   +  P++    SLN+S A  ++++E +
Sbjct: 216 LLHTEVDYTGRVAIAVGSEKHGVDDALLVAATHRVRIPMHGRANSLNVSVAAAVVLYEAV 275

Query: 170 ENS 172
              
Sbjct: 276 RQR 278


>gi|297661624|ref|XP_002809335.1| PREDICTED: probable methyltransferase TARBP1-like [Pongo abelii]
          Length = 348

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 23/164 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
             N+G + R    F  + L +         ++ +  S +A+  +  V V        L++
Sbjct: 201 PTNLGGLCRTCEVFGASVLVI-GSLQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQ 259

Query: 80  AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              + + I     TA++ +  +    P              +   ++ G ER G+    I
Sbjct: 260 KKTEGYTIIGVEQTAKSLDLTQ-YCFP--------------EKSLLLLGNEREGIPANLI 304

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
              +  +  P   +  SLN+  +  L++WE     ++S   N  
Sbjct: 305 QQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDNKP 348


>gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268]
 gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268]
          Length = 260

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 13/168 (7%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+ +       +IL + Q   N+G + R      +  + L        S K   S+  + 
Sbjct: 98  PKKEKPKGDLFLILENIQDPGNLGTLFRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSL 157

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +       +++E   DL F+  +    ++    V A        + +         +F
Sbjct: 158 FRLPF-----SIEE---DLFFLCES---LKSAGVQVFALDLDGKKTHFQAAFQGPSAFLF 206

Query: 126 GRERWGLTNEEIALS-NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GLT +E++      +  P+     SLN++ +  ++++E +   
Sbjct: 207 GNEGNGLT-KELSQCATEKLLIPMEGKIESLNVATSASIVLYEAVRQR 253


>gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
 gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
          Length = 310

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 11/163 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           ++    ++ L +     N+G + R++  F    + +   R    +  A  +SA A   + 
Sbjct: 157 DTPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMP 216

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R  +NL  A+ D            +    V+          + +     + ++ G E 
Sbjct: 217 VAR-ATNLTRALKDWA----------DRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEG 265

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+       + ++S P+     SLN S A  +++ E     
Sbjct: 266 KGLSRLVRQTCDEVVSVPMAGPTESLNASVAAGVVLAEIARQR 308


>gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 248

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 6   PQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            +LQ   + P  +L+    +  +N+G + R      +  + + + +    +      SA 
Sbjct: 85  EKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAECAGVDGIIIPSHKSAEVNPTVSRVSAG 144

Query: 64  ADC---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           A     +I    + + +K    +  ++    A+ R ++ +   P                
Sbjct: 145 AVEHMAIIRENNLVNTIKYLKQEGFWVLGADAKARQSYFNTSIP--------------SP 190

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             ++ G E  G+        + ++  P+     SLN S A  L+++E +   +
Sbjct: 191 TALVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIYEVLRQRL 243


>gi|323466130|gb|ADX69817.1| TrmH family RNA methyltransferase [Lactobacillus helveticus H10]
          Length = 255

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 55/151 (36%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P+     + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPKSADLYNSKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L + I D                   +  +              + +I G E  G+++ 
Sbjct: 171 DLADVITDFQ---------DAAIPVYASMLDKTAKQLPDFEKVSQLALIIGNEAHGVSST 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +LS+  +  P+     SLN + A  +M++
Sbjct: 222 IASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|150396754|ref|YP_001327221.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150028269|gb|ABR60386.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 153

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 27/171 (15%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I L  P +  N G + R      L  + ++ P     S++    +      I +V
Sbjct: 1   MNELRIALYQPDIPGNTGTILRLAACLGLA-VDIIEPAGFDLSDRNLKRA--GMDYIAAV 57

Query: 72  --------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                     F   + +      + A+T       + +  P +                +
Sbjct: 58  TMTRHVNWERFETWRSS-TGRRLVLASTKAAVPYTRFMFKPDDI---------------L 101

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + GRE  G+ ++    ++A I  P+ P   SLNI+ A  ++V E +  +  
Sbjct: 102 LLGRESAGVPDQVHERADARILIPMAPGQRSLNIAMAGAMIVGEAIRQTDA 152


>gi|256752504|ref|ZP_05493361.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748639|gb|EEU61686.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 98

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            A    E +     V  + G E  G++   +   + ++  P+     SLN S A  ++++
Sbjct: 29  NAGKSFEEVNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIY 88

Query: 167 EC 168
           + 
Sbjct: 89  QV 90


>gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
          Length = 239

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 19/151 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L + +   N G + R    F +  +          ++    +S  A   I  + V SNL 
Sbjct: 95  LDEIEDPRNFGAIIRTANAFGVDGIIYKKYHQASINDLVIKTSMGAINYIHMIEV-SNLS 153

Query: 79  EAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            AI +L     ++YAT+                     E++        I G E  G++ 
Sbjct: 154 NAIKNLQNEGFWVYATS--------------LLKSQSYEKVDYANKSVFIVGNESKGVSP 199

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
             +  ++  +   +     SLN+  A  +++
Sbjct: 200 LILKNADQSVRIDMFGDVQSLNVGVATGIIL 230


>gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
           19977]
 gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 270

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 13/151 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84
           EN+G + R      +    L       P   +A   S     ++   R    L E    L
Sbjct: 130 ENLGSIFRNAAGMGV-DAVLFGSGCADPLYRRAVRVSMGHALLVPFAR----LPEWPKSL 184

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERWGLTNEEIALSNA 142
           + +     R+       + P   +  L + I     + V ++ G E  GLT+  +  S+ 
Sbjct: 185 YRL-----RDSGFRLLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDL 239

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  P+     SLN++ A  L  +E    + 
Sbjct: 240 RVRIPMANGTDSLNVATAAALAFYERARLAP 270


>gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367]
 gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367]
          Length = 255

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           +L   +   N+G + R      +  + +   R    +     +S  A   +   RV    
Sbjct: 108 VLDGVEDPHNLGSILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERVPVARVTNLV 167

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + ++E      +++ T               + A        +     +I G E  G++ 
Sbjct: 168 NTVRELKDRGVWVFGT---------------DMAGTDYRDWDAKGASALIIGNEGKGISR 212

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + +++ P+     SLN S A  L++++   + 
Sbjct: 213 LLKETVDQMLTIPMVGEVQSLNASVAAGLLMYQGFSSR 250


>gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 245

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 25/154 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
           N G + R      +  + +  P+ G    ++    +SA A   I   +V  ++K+A+   
Sbjct: 109 NFGAIIRTAVCTGVDAIII--PKSGGAPVTDDTVKTSAGAIFNIPICKV-DHIKDALFYL 165

Query: 82  --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
             + +  + AT               E        +       ++ G E  G+T   + L
Sbjct: 166 QGSGVQVVAAT---------------EKTEDSIYDLDYTTPTALVMGSEGKGVTPGVLKL 210

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +     P+     SLN+S A    ++E +   I
Sbjct: 211 VDHKAKLPMAGTISSLNVSVACGAFLYEVVRQRI 244


>gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC
           5463]
          Length = 250

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 19/170 (11%)

Query: 7   QLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           Q  +  K P ++IL   +   N+G + R+     +  + +        +     +S  A 
Sbjct: 92  QFDDEGKEPFLLILDSIEDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAI 151

Query: 66  CVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   RV       KE     ++I+ T               + A        +     
Sbjct: 152 DYVPVARVNNLVQTTKELKKRGYWIFGT---------------DMAGTDYREWNAKGKTV 196

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        +  I+ P+     SLN S A  +++++   + 
Sbjct: 197 LVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAYNSR 246


>gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides KD131]
 gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides KD131]
          Length = 261

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A  P+++L+       N+G V R+   F     R V       + +  + +  A   ++ 
Sbjct: 109 AGQPLLVLLDRVTDPHNVGAVLRSAEVFGA---RAVIAPHRHSAPETGALAKTASGALER 165

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFG 126
                  NL E +  L             +  V    EAA+ L E  +  +G+ V ++ G
Sbjct: 166 QPYLRVGNLGETMEKL---------KAMGYILVGLEGEAAMTLAEGLQGTAGRPVALVLG 216

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            E  GL  +     + ++  P    F SLN+S
Sbjct: 217 AEGPGLREKTRETCDRLVRIPAAGGFGSLNVS 248


>gi|146299980|ref|YP_001194571.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146154398|gb|ABQ05252.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 262

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 24/162 (14%)

Query: 18  ILVDPQL--GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ILV   L    N+G V R     NL  + + +P+    +     SS     +  +     
Sbjct: 116 ILVAESLEKPGNVGAVLRTADAANLDAVLIADPKSDLYNPNIVRSSVGC--LFTNQIATG 173

Query: 76  NLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +E IA     ++ F  AT      N  S       A              ++ G E  
Sbjct: 174 TTEEIIAFLKEKNISFYSAT----LQNSTSYHTQNFTAP-----------TALVVGTEAT 218

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL+ +    +   I  P+     S+N+S A  ++++E     
Sbjct: 219 GLSQKWRDEATQNIIIPMQGEIDSMNVSVAAAILIFEAKRQR 260


>gi|91788542|ref|YP_549494.1| tRNA/rRNA methyltransferase SpoU [Polaromonas sp. JS666]
 gi|91697767|gb|ABE44596.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas sp. JS666]
          Length = 260

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 19/165 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A  L+  A    +IL   Q   N+G + R+   F   Q+  +       S K   +  
Sbjct: 107 PAASGLEAGAAS--VILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGM 164

Query: 63  NADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A   +  V        A+A L   I  T++   +       P+  A             
Sbjct: 165 GAHFALQLVEGVE--PAALAALTVPIVVTSSHQGSFLHQQPLPRPCA------------- 209

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               G E  G++++ +A S   +         SLN++ A  + ++
Sbjct: 210 -WAMGHEGQGVSDDLMARSALKVRIDQPGGEESLNVAAAAAICLY 253


>gi|330828511|ref|YP_004391463.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328803647|gb|AEB48846.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565]
          Length = 150

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 22/153 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
            + LV+P+  EN+G V RA   + + ++     R     E AR  + +   +++ + +  
Sbjct: 8   CVGLVNPKSPENVGSVMRAAGCYGVDEVYYTGNRF----ELARRFATDTKQMVEKIPLLG 63

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +L   I             +     V+   + A  L + +   +    IFG E   L 
Sbjct: 64  VDDLMAFI------------PQGCVPVVVDLIDGATPLPDYVHP-ERAFYIFGPEDGTLD 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                    ++  P       +N++ +V ++++
Sbjct: 111 PALYGAVKDVVYVPT---QGCMNLAASVNVILY 140


>gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
 gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
          Length = 238

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 18/167 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +    KG +I+L + +   N+G + R       T +          +      SA A 
Sbjct: 81  QNVSEDGKGLIIMLDELEDPHNLGAILRTADAIGATGVIFKKTNAVGLTATVAKVSAGAI 140

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +    V +    L++      +   T               +        +    N  
Sbjct: 141 DTVKCASVTNLSRTLEDLQKKGWWAVGT---------------DMDGQDYRSVKYDFNTV 185

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +I G E  G++       + ++S P+     SLN + +  ++++   
Sbjct: 186 LIIGNEGKGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIY 232


>gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
 gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
          Length = 287

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 31/167 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVF----- 74
           + +   N G + R      +    LV  R G   +     +SA A   ++ VRV      
Sbjct: 142 EIEDPHNFGALLRTADAAGVHG-VLVPERRGCALTATVAKTSAGA---VEHVRVVRIGNI 197

Query: 75  ----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 LKE    L F+ A  A + + F + L                  + I+ G E  
Sbjct: 198 VQEMKRLKE--RGLWFVGADMAGDEDMFHADLT---------------GALCIVIGSEGK 240

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           GL        + ++  P++    SLN S A  L+++E     ++   
Sbjct: 241 GLGRLVKETCDFLVRIPMHGAINSLNASVAGALLMYEARRARLLGRA 287


>gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
          Length = 276

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269


>gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
 gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
          Length = 251

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   ++  +   +    V  +L + I 
Sbjct: 114 QDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLP--VVKGDLAQWI- 170

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    AR +     V        V    +    +  ++FG E  G+  + + L+  
Sbjct: 171 ---------ARFKEQGIPVYGTALENAVDYRTVPQSPSFALLFGNEGSGVRPDLLRLTTE 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
            +  P+     SLN++ A  ++++   
Sbjct: 222 NVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|224584503|ref|YP_002638301.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469030|gb|ACN46860.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|323130986|gb|ADX18416.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326628796|gb|EGE35139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 349

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 212 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 270

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 271 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 315

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 316 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 346


>gi|153008950|ref|YP_001370165.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151560838|gb|ABS14336.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 180

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 44/194 (22%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARS 59
            P+  +L+       + L  P +  N G + R  A   F +    L+ P     S+++  
Sbjct: 18  YPHHMELR-------VALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRSLK 67

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA----IVLNERI 115
            +      ++                     T     ++      +  A    ++L+ + 
Sbjct: 68  RA--GMDYLEQA-------------------TLTRHADWHHFEDWRLQAKRRIVLLSTKA 106

Query: 116 FS-------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                     +N  ++FGRE  G+ +     ++A +  P+ P   SLN++ +V +   E 
Sbjct: 107 AIPYTDYRFQENDILLFGRESSGVPDNVHNSADARLLIPMMPGARSLNLAVSVAMTAGEA 166

Query: 169 MENSIVSSEKNVKE 182
           +       +   +E
Sbjct: 167 LRQRRDKVDSLRQE 180


>gi|124514779|gb|EAY56291.1| putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
           rubarum]
          Length = 192

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 30/167 (17%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++    P++ +   Q   N+G + R      +  + L   R    S     +S+ A   I
Sbjct: 40  KDPLPSPLVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTI 99

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---------Q 119
             +RV                      N  +S++  ++    +      G          
Sbjct: 100 PLIRV---------------------GNLSQSLMYLRKRGYGVASLALGGSTAYRDPFPA 138

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + ++ G E  G++   +  S+  +S P+     SLN+S A+ + ++
Sbjct: 139 PLVVVVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLY 185


>gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
 gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
          Length = 252

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 15/155 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIAD 83
            N+G + R+   FN+  + L  P    PSE      +S+ A  +I    V +        
Sbjct: 111 HNVGAIMRSAVCFNVDAIIL--PYHNSPSENCGMSKTSSGAIDMIPIAYVIN-------- 160

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              + +T    +N              L  +        IIFG E  G+        + +
Sbjct: 161 ---LVSTIKLFKNAGYWCYGFDTKEGELLHKTKFDNKKLIIFGSEDKGMRKLTKENCDFL 217

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +    +    SLN+S A  + ++     +   + +
Sbjct: 218 LKIATSNKIDSLNVSNAAAVALYSIFIQNYDQTFQ 252


>gi|16761506|ref|NP_457123.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765968|ref|NP_461583.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140797|ref|NP_804139.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62181223|ref|YP_217640.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161612632|ref|YP_001586597.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553664|ref|ZP_02347411.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994861|ref|ZP_02575951.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168245088|ref|ZP_02670020.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168823163|ref|ZP_02835163.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194448811|ref|YP_002046657.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197247519|ref|YP_002147552.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|198243831|ref|YP_002216663.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387404|ref|ZP_03214016.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205353691|ref|YP_002227492.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858002|ref|YP_002244653.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213161475|ref|ZP_03347185.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213646341|ref|ZP_03376394.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289812223|ref|ZP_06542852.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289825485|ref|ZP_06544692.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25325047|pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421198|gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503807|emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136422|gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128856|gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161361996|gb|ABX65764.1| hypothetical protein SPAB_00327 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407115|gb|ACF67334.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197211222|gb|ACH48619.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197938347|gb|ACH75680.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604502|gb|EDZ03047.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205273472|emb|CAR38449.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321946|gb|EDZ09785.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327360|gb|EDZ14124.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205336134|gb|EDZ22898.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340551|gb|EDZ27315.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206709805|emb|CAR34157.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247846|emb|CBG25675.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994789|gb|ACY89674.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159199|emb|CBW18714.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913642|dbj|BAJ37616.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085531|emb|CBY95310.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226003|gb|EFX51056.1| hypothetical tRNA/rRNA methyltransferase yfiF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322715711|gb|EFZ07282.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|326624419|gb|EGE30764.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332989577|gb|AEF08560.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 345

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 311

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|197263980|ref|ZP_03164054.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242235|gb|EDY24855.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 345

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 266

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 267 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 311

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 312 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 342


>gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
           noxia ATCC 43541]
 gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
           noxia ATCC 43541]
          Length = 272

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 13/155 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +  +N+G + R      +  + L        +E     SA A   +   R+ +       
Sbjct: 125 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGN------- 177

Query: 83  DLHFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                 A T R  +     +           +R      + ++ G E  G++     + +
Sbjct: 178 -----IAQTMRALKEQGFWIAGADMDGTETYDRANLTGALVLVIGSEGRGMSRLTREICD 232

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  P+     SLN S A  ++++E        +
Sbjct: 233 FTVRLPMCGKINSLNASAAGAILMYEAQRQRRAKA 267


>gi|213612386|ref|ZP_03370212.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 223

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 86  PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 144

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 145 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 189

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 190 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 220


>gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
           KBAB4]
 gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
           KBAB4]
          Length = 254

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +    V  NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A S+ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPFGEVTPAG-SFALIVGNEGSGVRQEILAKSDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 21/147 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFSNLKEAIA 82
             NIG + R+   F+     ++  +   PSE A  +  ++ A   I  +R+ SNL +A+ 
Sbjct: 144 PHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQ 200

Query: 83  DLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL--TNEEIAL 139
            +H + + T   + ++ K +           E+      + +I G E  GL    +E A 
Sbjct: 201 KMHSWGFQTIGLSSDSKKPL-----------EQEIKNDKIALILGAEGKGLRPKTQETAT 249

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
           S A +  P   +  +LN+S A  + ++
Sbjct: 250 SMAHLHMP--GIIKALNVSNAAAVALY 274


>gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 25/173 (14%)

Query: 2   TPYAPQLQNSAKG--PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR- 58
           +P  P   +       VI++       N+G + R+   F      L+      P E    
Sbjct: 113 SPLKPCKLSELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAK--ALITTCRHSPHESGVL 170

Query: 59  -SSSANADCVIDSVRVFSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIF 116
             +++ A  +I  + V  NL E + ++H    T+   +    + +           E   
Sbjct: 171 AKAASGALEMIHYITV-RNLAETLQEIHQTGFTSFGLDSEGDQPL-----------ETTL 218

Query: 117 SGQNVGIIFGRERWGL---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +G  + ++ G E  GL   T E +    A+    +     SLN+S A  + ++
Sbjct: 219 TGSKIALVLGAEGKGLRKKTRETV--C-ALARLDMPGNIKSLNVSNAATIALY 268


>gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
 gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
          Length = 366

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 16/151 (10%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + S  G ++ L       N+G V R+   F    + +   R    +  A  +SA A   +
Sbjct: 209 RASDPGLLVALDGVTDPRNLGAVVRSAAAFGAQGVVVPERRAAGMTAAAWKTSAGAAARL 268

Query: 69  DSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              R  +    L+        +    A                + L++   +   + ++ 
Sbjct: 269 PVARATNLNRTLRSYADGGLVVVGLAANAD-------------VSLDDLAAATDPIVLVI 315

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
           G E  GL+       + ++  P+     SLN
Sbjct: 316 GSEGRGLSRLVGENCDLLVRIPMAGEVESLN 346


>gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
 gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
          Length = 276

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 269


>gi|260223702|emb|CAX28485.1| tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Phlomobacter
           fragariae]
          Length = 218

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           Q   II G+E+ G++ + +AL++   + P+  +  SLN+S A  L+++E       ++  
Sbjct: 112 QPNCIILGQEQTGISKQALALADH--NIPMMGMVQSLNVSVASALILYEAQRQRQNANMY 169

Query: 179 NVKEQNTPATKGELLSFLDY 198
           +    +  + + +     D 
Sbjct: 170 DSLF-SQLSEEEQQEWLFDR 188


>gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 275

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L      EN+G + R      +  +   +        +A   S     ++   R   
Sbjct: 125 VVVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAAD 184

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--IFSGQNVGIIFGRERWGLT 133
              + +                    + P   A  L E       Q + ++ G E  GLT
Sbjct: 185 WPADLLMLQQL---------GFRLLAMTPHGDARELGEAMDAVREQPIALLVGAEGPGLT 235

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              + +S+  +  P++    SLN++ A  L  +E
Sbjct: 236 AAALRISDLRVRIPMSRGTDSLNVATAAALAFYE 269


>gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330]
 gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
 gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
           Tulya]
 gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513]
 gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
 gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
 gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
 gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
 gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
 gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
 gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
 gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
 gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99]
 gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
 gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
          Length = 276

 Score = 48.5 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 269


>gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           casseliflavus ATCC 12755]
          Length = 279

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 21/175 (12%)

Query: 8   LQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L  + + P+ +IL + +   N G + R      +  + +   R    +     +S  A  
Sbjct: 121 LAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVE 180

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            I   RV +NL +A+  L     +I+ T     +                    +   VG
Sbjct: 181 HIPVARV-TNLTQAVQQLKKAGFWIFGTDMSGSDYRTW---------------NAQGAVG 224

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +I G E  G+        + +++ P+     SLN S A  L++++   +   +S+
Sbjct: 225 LIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNGASQ 279


>gi|254470047|ref|ZP_05083451.1| rRNA Methylase [Pseudovibrio sp. JE062]
 gi|211960358|gb|EEA95554.1| rRNA Methylase [Pseudovibrio sp. JE062]
          Length = 151

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 63/165 (38%), Gaps = 25/165 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV- 73
           P I L  P + +N G + R     ++T + L+ P     S+ A   +      I+  ++ 
Sbjct: 2   PDIALYQPDIPQNTGTLLRLAACMDVT-VHLIEPAGFPLSDHALKRA--GMDYIERAKLQ 58

Query: 74  ----FSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
               + + +E         I  TT   R        P        + +       I+ GR
Sbjct: 59  RHMDWESFREWQLAEKRRLILMTTKGTR--------PYTQFAFKKDDL-------ILMGR 103

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  G+  E   L+++ +  P+     SLN++ +  +++ E +  +
Sbjct: 104 ESSGVPEEIHQLADSRLLIPMKNGMRSLNMAVSTGMVLGEALRQT 148


>gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 262

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 12/165 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +   + + P ++L D Q   N+G + R      + Q+          + K   ++  A  
Sbjct: 107 EAPQALQQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADVYAPKVLQATMGA-- 164

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  V+V+     A          T   +     +    + A +   R+   Q   ++ G
Sbjct: 165 -LARVQVYRYTDRA-------ALLTMLKKTEIPVIGTFIDGAPLRTLRLAPEQPYILVLG 216

Query: 127 RERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169
            E  G++++  AL +  I+   PV+    SLN++ A  +++   M
Sbjct: 217 NEGNGISSDLSALVSQRITIPSPVDNHCESLNVAVAGAIVMAHLM 261


>gi|257069324|ref|YP_003155579.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256560142|gb|ACU85989.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 295

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 27/177 (15%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADC 66
           L       V++L + +   N+G + R         L L         S KA  ++  +  
Sbjct: 138 LPGEDPATVVVLHEVRDPGNVGTLIRTADAAG-ADLVLLTRTSADPYSPKAVRAATGSL- 195

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-------GQ 119
                             H    T A   +   ++ A    A   +    S         
Sbjct: 196 -----------------FHLPVLTGAEIGDVLAALAAGGLTAAATSGHASSELFDVELPP 238

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +  IFG E  GL    +  +   +  P+     SLN+  A  + ++E +      +
Sbjct: 239 RIAWIFGNEAHGLDRATLDAAPLRVRIPLAGRAESLNVHTAATVCLFETLRRRRAGA 295


>gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 265

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           VD     N G V R         + L        + K   +SA +   +  V+   +   
Sbjct: 119 VDVAEPGNAGTVIRVADAVGADAVLLAGDAVDPMNGKVVRASAGSVFHLPVVQ-ERDASA 177

Query: 80  AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           AIA L      + AT A   +   S+    E                 +FG E  GL   
Sbjct: 178 AIAQLKESGLTVLATAA---DGEVSLDDADEMLA---------APTAWLFGNEAHGLPRG 225

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             A ++  I+ P+     SLN++ A  + ++
Sbjct: 226 LQAAADHRIAIPIRGRAESLNLATAASICLY 256


>gi|183598085|ref|ZP_02959578.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
 gi|188020242|gb|EDU58282.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
          Length = 347

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 15/153 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R+  +F +  + L +          R++   A+ +  ID+  + + L +   
Sbjct: 208 PHNLGGIMRSCAHFGVQGVILQDAGVVESGAAIRTAEGGAEHIKAIDADGLSNTLSQFRQ 267

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + I  T++                     +      + ++ G+ER GL++      + 
Sbjct: 268 AGYTIVTTSS-------------HKGSQDISKAKLPAKMVLVLGQERDGLSDSVWNEGDM 314

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +         SLN+S A  +M+ +  + +  +
Sbjct: 315 SLYIGGTGKVESLNVSVATGIMLAQWWQQNKAN 347


>gi|170051070|ref|XP_001861598.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167872475|gb|EDS35858.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1272

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 23/171 (13%)

Query: 14   GPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            G +++  LVD     N+G +AR+   F + Q  +V       S++ ++ S  A+  ++  
Sbjct: 1116 GLIVVASLVD--RAPNLGGLARSSEIFGVRQ-YVVGSLKDVESKEFQALSMTAEKWLNVA 1172

Query: 72   -----RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                 ++   L+E  A  + I    A      + +           ++I       ++ G
Sbjct: 1173 ELKSFQLVDYLREMKAKGYAIVG--AEQTTGSRPI-----------QQIQFPARAVLVLG 1219

Query: 127  RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             E+ GL    I+  + +   P   +  SLN+     + +WE     +V  E
Sbjct: 1220 HEKEGLPAHIISQLDIVAEIPQFGVVRSLNVHVTGAIFMWEYARQHLVGVE 1270


>gi|163784271|ref|ZP_02179188.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880460|gb|EDP74047.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 131

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 45  LVNPRD--GWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL 102
           +V PR+     +E     SA A   +   +V S+L++++     +           K + 
Sbjct: 6   VVVPRERSAPINEVVVKGSAGAVFHLPIAKV-SSLRDSLEKFQKLGGWILAIEKGGKPIH 64

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
                      ++     + ++ G E  G +   + L++ I + P+     SLN++ A  
Sbjct: 65  -----------KLKFPFPLALVLGSEGKGTSKSILKLADIIATIPMKGKITSLNVASAGA 113

Query: 163 LMVWECMENSIVS 175
           + +WE  + + + 
Sbjct: 114 IGMWEVSKQNWIE 126


>gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Monodelphis domestica]
          Length = 425

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 70/187 (37%), Gaps = 10/187 (5%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+   +++   +IL + Q   N+G V R+     + +  + + R+  P     S ++   
Sbjct: 208 PREDPASRRLWLILEEIQDPRNLGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKASAGT 266

Query: 66  CVIDSVRVFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +  V    +L   +   A   ++ A T     +     +  +  I         ++  
Sbjct: 267 MEVMDVFATDDLPGLLKVKAQQGWLVAGTVGCPGSVVPQCS--DIPITSCLEFLWDRSTL 324

Query: 123 IIFGRERWGLTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSEK 178
           ++ G E  GL++E   L + +++  P     P   SLN+S A  +++   +         
Sbjct: 325 LVLGNEGSGLSHEIRNLCHILLTILPGRELPPEVESLNVSVAAGILLHSIISQRKGQDSL 384

Query: 179 NVKEQNT 185
             +E   
Sbjct: 385 LKEETRA 391


>gi|119026340|ref|YP_910185.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765924|dbj|BAF40103.1| probable RNA methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 169

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 25/166 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    N +
Sbjct: 21  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 77

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
           + +  +    I A TA               A  L   I       ++FG E   + +  
Sbjct: 78  DLVESMPDSRIIAFTA--------------HATKLYTDIEYRPTDILLFGPEPGNIPDPM 123

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + +A  +    +  P+ P   SLN++    + ++E       +  K
Sbjct: 124 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLNFAGGK 169


>gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 249

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 13/161 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS-SANADCVIDSVRVFSNL 77
           L + Q  +NIG + R+     +    +V  R   P     +  SA A   ++   V S  
Sbjct: 100 LDELQDPQNIGALIRSANAAGV-DAVIVPQRRSAPLGAVVAKISAGA---LEHEPVVS-- 153

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                 +  +  T    +     ++        L         + ++ G E  G+     
Sbjct: 154 ------VTNLVRTMKDLKKRGFWIVGADMDGKDLYFDADLTGPLVLVVGAEGKGVGRLVK 207

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
              + ++  P+     SLN S A  ++++E     I+S+ K
Sbjct: 208 ENCDFLVRIPMLGQVQSLNASVAGGILLYEITRQRIISARK 248


>gi|229815427|ref|ZP_04445759.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
           13280]
 gi|229808960|gb|EEP44730.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
           13280]
          Length = 303

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--------FSNL 77
           N+G + R+    N+    LV+P    P   ++   S      +   R+        +   
Sbjct: 149 NVGAIFRSAAALNVDG-ILVSPTCVDPLYRRSARVSMGTVFQVPWTRIGSEARAWPYDGF 207

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            E +    F  +  A + ++  S+  P          +   +   I  G E  GL    I
Sbjct: 208 -EVLKGAGFTCSAMALSDDSV-SLDDP---------SLLDIERHAIFMGTEGTGLQARTI 256

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           A  +  I  P+     SLN++ A  +  W+ 
Sbjct: 257 AGCDKTIRIPMAHGVDSLNVAAASAVAFWQL 287


>gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
 gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
          Length = 254

 Score = 48.5 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R      +  + L        + K   ++  +   +  +R   NL+E I 
Sbjct: 116 QDPGNIGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPIIR--GNLREWIE 173

Query: 83  DL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      IY T   N  +++ +   +                 ++ G E  G+  + + 
Sbjct: 174 RLCEKNVAIYGTALENGEDYRHIKPAR--------------PFALLVGNEGSGVHKKLLQ 219

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++   +  P+     SLN++ A  ++++   + 
Sbjct: 220 MTTKNLYIPIYGQAESLNVAVAAGILLYHLQDA 252


>gi|213425263|ref|ZP_03358013.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 274

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 137 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFR 195

Query: 82  ADLHFIYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + +  T++ R +  F + L                + + ++ GRE   L        
Sbjct: 196 QAGYTVVTTSSDRGQALFSTTLP---------------EKMVLVLGREYDYLPEAAREPD 240

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +  +         SLN+S A  +++ E    
Sbjct: 241 DLCVKINGTGNVESLNVSVATGVLLAEWWRQ 271


>gi|59711737|ref|YP_204513.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|197335716|ref|YP_002155925.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
 gi|59479838|gb|AAW85625.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|197317206|gb|ACH66653.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
          Length = 152

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 52/168 (30%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I LV+P+  EN+G V RA   + +                +   +     +        
Sbjct: 7   CIGLVNPKTPENVGSVMRAAGCYGVN---------------SVFYTGKRYDIAKQ----- 46

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVL--------APKEAAIVLNERIFSGQ-------- 119
                       + T  ++++    ++         P +   V  + I   +        
Sbjct: 47  ------------FCTDTKSQHLNLPLIGVEDLRDIVPLDCVPVAVDLIEGAKPLPDYKHP 94

Query: 120 -NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                IFG E   L  E        I  P N     +N++ AV ++++
Sbjct: 95  PRAFYIFGPEDGTLKKEITDFCRETIYVPTNGC---MNLAAAVNVIMY 139


>gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 249

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 43/184 (23%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M P++  L+ +    +++L       N+G + R    F    + L+       +EK   S
Sbjct: 94  MPPFS-SLKQAQN--ILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRS 150

Query: 61  SANAD-------------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA 107
           +  A               ++     F  L   +ADL                       
Sbjct: 151 ARGAHFKIPLRRGNINELELLAKQGNFQTL---VADLK---------------------- 185

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
              + +   S +   +I G E  G  + E+      I  P++    SLN++ A  ++++ 
Sbjct: 186 -GQILKSTVSKKRKILIMGNEAHG-PSPEVFKFAEPICIPMSGEMESLNVAVAGGILLYA 243

Query: 168 CMEN 171
             + 
Sbjct: 244 LNQM 247


>gi|221104729|ref|XP_002169584.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog, partial [Hydra magnipapillata]
          Length = 183

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 27/160 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSN----- 76
           Q   N+G + R+   F + +  +VN ++    +      S+ A   ++   V+S      
Sbjct: 35  QDPMNLGAIIRSATYFGVDK-IIVNEKNSCGLTATVSKVSSGA---MEWASVYSTRDMQR 90

Query: 77  -LKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            LK+ +  D +    T  ++    K         +     +   +   ++ G E +G+  
Sbjct: 91  LLKDLLNYDWNL-IGTVTKDYTQSK---------VHSCHDVQLSKRNVLVIGNEGFGMNP 140

Query: 135 EEIALSNAIISFPV-NPLFP----SLNISQAVLLMVWECM 169
              ++   +++ P  N   P    SLN+S A  +++   M
Sbjct: 141 LITSICTKLVTIPSFNDRLPEGLDSLNVSVATGILLHSLM 180


>gi|154252688|ref|YP_001413512.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans
           DS-1]
 gi|154156638|gb|ABS63855.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans
           DS-1]
          Length = 175

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 12/165 (7%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L +P +  N+G + R      +  + ++ P  G+P             +  +   +  L 
Sbjct: 23  LYEPDIPPNVGTLIRLGACLGVP-VHIIEP-CGFPWSD--------RDLKRAAMDYGALA 72

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +      +      R   +   +L  K     ++     G    ++ GRE  G+  E   
Sbjct: 73  DVTRHASWAAFAETRTAASRLILLTTKTHNNFMDFTFRPGDT--LLIGRESAGVPAEVHD 130

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
            ++A ++ P+ P   SLN++ A  +++ E +  +         E+
Sbjct: 131 AADARVTIPMRPPARSLNMAVAASMVLTEALRQTGGFPGAGEIER 175


>gi|313836588|gb|EFS74302.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314928098|gb|EFS91929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314972098|gb|EFT16195.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
          Length = 99

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + +  + G E WGL   + AL++ ++  P+     SLN+S A  ++++
Sbjct: 44  RPIAWLMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLY 91


>gi|312601120|gb|ADQ90375.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 202

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + Q   N+G + R  ++F      LV       + K  S+S  A  +     ++  
Sbjct: 62  VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 113

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             + I+D  F +            + + ++ A  L + ++   ++  IIFG E  G++ +
Sbjct: 114 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 167

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L++  I  P+N  F SLNI+ A  +   
Sbjct: 168 LNKLADKKIYIPIN--FESLNIASANAIFCH 196


>gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 251

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + Q   N+G + R  ++F      LV       + K  S+S  A  +     ++  
Sbjct: 111 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 162

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             + I+D  F +            + + ++ A  L + ++   ++  IIFG E  G++ +
Sbjct: 163 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L++  I  P+N  F SLNI+ A  +   
Sbjct: 217 LNKLADKKIYIPIN--FESLNIASANAIFCH 245


>gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 251

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + Q   N+G + R  ++F      LV       + K  S+S  A  +     ++  
Sbjct: 111 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 162

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             + I+D  F +            + + ++ A  L + ++   ++  IIFG E  G++ +
Sbjct: 163 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 216

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L++  I  P+N  F SLNI+ A  +   
Sbjct: 217 LNKLADKKIYIPIN--FESLNIASANAIFCH 245


>gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 249

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + Q   N+G + R  ++F      LV       + K  S+S  A  +     ++  
Sbjct: 109 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 160

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             + I+D  F +            + + ++ A  L + ++   ++  IIFG E  G++ +
Sbjct: 161 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 214

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L++  I  P+N  F SLNI+ A  +   
Sbjct: 215 LNKLADKKIYIPIN--FESLNIASANAIFCH 243


>gi|71893496|ref|YP_278942.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 249

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + Q   N+G + R  ++F      LV       + K  S+S  A  +     ++  
Sbjct: 109 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 160

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             + I+D  F +            + + ++ A  L + ++   ++  IIFG E  G++ +
Sbjct: 161 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 214

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L++  I  P+N  F SLNI+ A  +   
Sbjct: 215 LNKLADKKIYIPIN--FESLNIASANAIFCH 243


>gi|54020405|ref|YP_115751.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232]
          Length = 252

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL + Q   N+G + R  ++F      LV       + K  S+S  A  +     ++  
Sbjct: 112 VILENIQNPGNLGTIIRNCYSFGFD---LVYSGVDLYNVKTISASKGAIFM---ANIY-- 163

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNE 135
             + I+D  F +            + + ++ A  L + ++   ++  IIFG E  G++ +
Sbjct: 164 FLKNISDF-FKFG-----PKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 217

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L++  I  P+N  F SLNI+ A  +   
Sbjct: 218 LNKLADKKIYIPIN--FESLNIASANAIFCH 246


>gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
 gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
          Length = 787

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 33/218 (15%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD------GWPSEKARSS 60
            L + +K  V++L   +  +NIG + R+   F +  +  VN  D         S ++  S
Sbjct: 499 SLGSGSKPVVLLLDGIENPQNIGAIIRSAVLFGVESVIFVNEFDKKTGSINPYSAESYRS 558

Query: 61  SANADCVI---------DSVRVFSNLKEAIADLHFIYATTARNR-----------NNFKS 100
           S  A             D+  V   L E + +   +  TTA N+             FK 
Sbjct: 559 SRGAVEYCNISQLYLRRDAAEV---LDEFVENGWEVV-TTASNKLIDDNADNGIVEQFKP 614

Query: 101 VLA-PKEAAIVLNE--RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           + +  K  ++  +E  R+   + + ++ G E  G++      S   IS P   L  SLN+
Sbjct: 615 LKSLTKNISLYSDESNRVLGLKPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNV 674

Query: 158 SQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSF 195
           SQA  +++ EC      S +K   E+        + S 
Sbjct: 675 SQASSIILGECWRIQARSLQKPNIERVKQIRAKGIESL 712


>gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
 gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
          Length = 279

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 21/175 (12%)

Query: 8   LQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L  + + P+ +IL + +   N G + R      +  + +   R    +     +S  A  
Sbjct: 121 LAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVE 180

Query: 67  VIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            I   RV +NL +A+  L     +I+ T     +                    +   VG
Sbjct: 181 HIPVARV-TNLTQAVQQLKKAGFWIFGTDMSGSDYRTW---------------NAQGAVG 224

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +I G E  G+        + +++ P+     SLN S A  L++++   +   +S+
Sbjct: 225 LIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNGASQ 279


>gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 263

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 19/156 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L      P+I+L       N+G + R+   FN   L   +            S++ A   
Sbjct: 110 LDGDPARPIIVLDQVTDPHNVGAIMRSAVAFNAAALVTQDRHAPPEGGVIGKSASGALET 169

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +  +RV  NL  A+ ++     +    T      F                      V I
Sbjct: 170 LPWIRVV-NLARAMEEMAEAGYWRIGLTGHTDTTF--------------AEALPAGPVAI 214

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           + G E  G+        +A+   P++    SLN+S 
Sbjct: 215 VLGAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250


>gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1]
 gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1]
          Length = 267

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 23/171 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++   K  V+I+   Q   N+G + R+      + + L+       + K   ++  +   
Sbjct: 110 IRPDQKPLVVIVDGVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKTLRATMGSLFH 169

Query: 68  IDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           +  ++V S++ EA+       +  +                P     V    + +   VG
Sbjct: 170 LPVIQV-SDVNEALEYLASIGVTLLVG-------------EPAGGIPVFKANLQT--PVG 213

Query: 123 IIFGRERWGLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           II   E  G   EEI   N   I+ P+     SLN++ A  ++++E +   
Sbjct: 214 IIVANEGAG-PREEIFRYNHQKITIPMPGCAESLNVAIATSIILYEAIRQR 263


>gi|26991269|ref|NP_746694.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24986324|gb|AAN70158.1|AE016655_3 RNA methyltransferase, TrmH family [Pseudomonas putida KT2440]
          Length = 156

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 61/167 (36%), Gaps = 24/167 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV 73
            I L +P+  EN+G V RA   +       VN     G   E+AR      D V D+ RV
Sbjct: 8   CIGLFNPKSAENVGSVMRAAGCYG------VNSVFYTGKRYERAR------DFVTDTKRV 55

Query: 74  FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             ++    I DL  I              +   E A  L +     + +  IFG E   L
Sbjct: 56  HYDIPLIGIDDLQRII-----PLGCTPVAVELVEGARPLPDYTHPDRAI-YIFGPEDGSL 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           + +        I  P       +N++  V +++++ M   + +    
Sbjct: 110 SEDVRGWCEETIYIPTEGC---MNLAATVNVVLYDRMAKGLNTRSGP 153


>gi|255015276|ref|ZP_05287402.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
          Length = 255

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V+ L   Q   N+G + R    F ++ +          S K   ++  A   +  V+
Sbjct: 101 KELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGA---LAHVK 157

Query: 73  V-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + +++L+       F+ A +A        +         L E+  SG  + +I G E  G
Sbjct: 158 IHYTDLE------TFLQAQSA----QAIPLYGTFLGGENLYEKTLSGNGI-LIMGNEGNG 206

Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVSS 176
           +     A  N  +  P  P       SLN++ A  ++  E        +
Sbjct: 207 IRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVCAEFRRRQGNPA 255


>gi|227494667|ref|ZP_03924983.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831849|gb|EEH64232.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 282

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 14/162 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N G + R         + + +      S K   SSA +   + S+    
Sbjct: 125 IVVLAQTQDPGNAGTMIRIADAAGADAVFICSGSVDVTSPKVVRSSAGSVFHLPSIVNVG 184

Query: 76  NLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            L E +       +  + A    + N    +    +  + ++      +    IFG E  
Sbjct: 185 -LPEVLEWARARGMQLLGA----DGNGSVDLFDAADCMVDVD----LAEPTAWIFGNEAH 235

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G    + +     +S P+     SLN+S A  + ++   +  
Sbjct: 236 GFAQFDTSEIEHFVSIPLGGHAESLNVSAAAAVCLFASAKAR 277


>gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
           2581]
 gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
           2581]
          Length = 270

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 11/173 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           A   +++L       N G   R+        + +   R    +   R  +  A   +  V
Sbjct: 109 AAPLLLVLDGITDVHNFGACLRSADAAGAHGVVVPKDRAAPLNATVRKVACGAAESVP-V 167

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +NL  ++          AR +     V      A              ++ G E  G
Sbjct: 168 YRVTNLARSL----------ARMKELGVWVTGTAGEAEASVYDADFTGATALVMGAEGKG 217

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           +        + ++  P+     SLN+S A  + ++E +     S +     + 
Sbjct: 218 MRRLTREACDGLVKLPMAGQVASLNVSVATGICLFEAVRQRAASGKSRASSEK 270


>gi|319953770|ref|YP_004165037.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422430|gb|ADV49539.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 240

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 53/158 (33%), Gaps = 19/158 (12%)

Query: 17  IILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++ VD  Q   N+G + R    F +  L   +      + K   ++  +   ++    + 
Sbjct: 99  VVAVDTIQDPGNLGTIIRLCDWFGIKDLVCSSDTVDCYNPKVIQATMGSITRVN--VTYL 156

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL + + +                 +         +       + + ++ G E  G++ E
Sbjct: 157 NLIDFLEETGL-------------PIYGAFMDGETVYTSQMPVKGI-LVMGNEANGVSAE 202

Query: 136 EIALSNAIISFPVNPLFP--SLNISQAVLLMVWECMEN 171
              L    I+ P        SLN++ A  +++ E    
Sbjct: 203 VEKLVQKRIAIPQFGAQTAESLNVATATAILLNEIRRG 240


>gi|296453627|ref|YP_003660770.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183058|gb|ADG99939.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 199

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 51  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 107

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131
           NL E++ +   I A TA               A  L   +       ++FG E  G    
Sbjct: 108 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 151

Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   E       +  P+ P   SLN++    + ++E    
Sbjct: 152 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 192


>gi|315498045|ref|YP_004086849.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315416057|gb|ADU12698.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 253

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+ L      +N+G + R    F    + L          KA   S      ++ V  + 
Sbjct: 114 VLALYGIANTDNMGGLMRNAAAFGADAVLLDTTCCDPLYRKAIRVSVGGA--LE-VPHYR 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              + +         T R        L+P  +  V  E +       ++FG E  GL  E
Sbjct: 171 T-DDMVG--------TLRGLGLTPYGLSP--SGAVTLEEVMPDPRSAVLFGAEGPGLPAE 219

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +A     +   ++  F SLN++    ++++   
Sbjct: 220 LMAAC-RTVRIDMHGGFDSLNVATTSGIVLYRFR 252


>gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
 gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
 gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
 gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
          Length = 265

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +    V  NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A S+ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPFGEVTPAG-SFALIVGNEGSGVRQEILAKSDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|330886610|gb|EGH20271.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 75

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           EA + L ++  +G  + II G E  G+        + ++  P+     SLN+S A  + +
Sbjct: 1   EAEVELYQQDLTGPTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 59

Query: 166 WECMENSIVSSE 177
           +E +    V + 
Sbjct: 60  FEALRQRSVKAA 71


>gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis
           carolinensis]
          Length = 406

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 51/195 (26%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK-EAI-- 81
             N+G + R+      +++ LV         K   +   A   +    + SNL+ + +  
Sbjct: 201 PGNLGTILRSAAGAGCSRVLLVKGCVDAWEPKVLRAGMGAHFRLP---IVSNLEWDLVPN 257

Query: 82  ----ADLHFIY----ATTARNRNNFKSV----------------LAPKEAAIVLNERIFS 117
                   ++     A   +                        L P        +    
Sbjct: 258 YLLPESCVYVADGSHAAGPQTDTGPPPPSPSKACSHGWVSRSSGLKPWADWDRDLDSQEE 317

Query: 118 GQN-----------------VGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLN 156
           G++                 V ++ G E  G++ E + L+       +  P+ P   SLN
Sbjct: 318 GEDEKTVEGQCCYDPWMDLSVAVVIGGETHGVSEEAMRLAQDTGGRRLLIPIAPGVDSLN 377

Query: 157 ISQAVLLMVWECMEN 171
            + A  ++++E    
Sbjct: 378 AAMAASILLFEAKRQ 392


>gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 318

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 30/173 (17%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCV 67
           N+    ++ L       N+G + R++  F      +V      P  +A   +A A     
Sbjct: 165 NNEDPLIVALDGVTDPRNLGAIVRSVSAFG-GHGVVV------PERRAAGMTAGAWKSSA 217

Query: 68  IDSVRV----FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             + R      +NL  A+         +    A             +    + +      
Sbjct: 218 GTAARTPVSRVTNLTRALEGYQKAGLTVVGLAA-------------DGEHTVEDLEALAG 264

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            V I+ G E  GL        +  +   +     SLN   A  ++++E     
Sbjct: 265 PVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317


>gi|150007109|ref|YP_001301852.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|256840404|ref|ZP_05545912.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381103|ref|ZP_06074241.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377529|ref|ZP_06987481.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
 gi|301311228|ref|ZP_07217156.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
 gi|149935533|gb|ABR42230.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|256737676|gb|EEU51002.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296280|gb|EEY84210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265548|gb|EFI07209.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
 gi|300830802|gb|EFK61444.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
          Length = 255

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 19/169 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V+ L   Q   N+G + R    F ++ +          S K   ++  A   +  V+
Sbjct: 101 KELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGA---LAHVK 157

Query: 73  V-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + +++L+       F+ A +A        +         L E+  SG  + +I G E  G
Sbjct: 158 IHYTDLE------TFLQAQSA----QAIPLYGTFLGGENLYEKTLSGNGI-LIMGNEGNG 206

Query: 132 LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVSS 176
           +     A  N  +  P  P       SLN++ A  ++  E        +
Sbjct: 207 IRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVCAEFRRRQGNPA 255


>gi|296271712|ref|YP_003654343.1| RNA methyltransferase [Arcobacter nitrofigilis DSM 7299]
 gi|296095887|gb|ADG91837.1| RNA methyltransferase, TrmH family, group 3 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 230

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 28/164 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANA------DCVI 68
           +++L       NIG + R  +   +    +V       +E     +S+ A          
Sbjct: 86  IVVLDGLTDVGNIGAITRTAYALGVDG--IVAAGVKSLNESGVIRTSSGAMLDMPFSLYP 143

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFG 126
           +S+ + + LK+  +    I AT                    L +   I     V +  G
Sbjct: 144 NSLDLANELKQ--SGFALIGAT---------------MNGTDLKKYGTITKDDKVALFLG 186

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            E  GL+N+ I   +  +S  +   F SLN+S A  ++++  M+
Sbjct: 187 SEGEGLSNKIIGKLDLKVSIGMENNFDSLNVSVAAGILIYNLMK 230


>gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 356

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 20/165 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANA---DCVIDSV 71
           + L       N+G + R++  F      +V P  R    +  A  +SA A     V  + 
Sbjct: 206 VALDGITDPRNLGAIIRSVAAFG-GHGVIV-PQRRSVGLTASAWKTSAGAAARTPVAMAS 263

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   LK       F+         +             L+E   + + + ++ G E  G
Sbjct: 264 NLTQTLKALKQRGVFVVGLDGGGDMS-------------LHEFTLADRPIVVVVGSEGKG 310

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           L+       + ++S P+     SLN   A  + ++E  +      
Sbjct: 311 LSRLVTETCDTVVSIPIGASTESLNAGIAASVTLYEIGKLRAAKR 355


>gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
 gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
          Length = 278

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 31/167 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVF----- 74
           + +   N G + R      +    LV  R G   +     +SA A   ++ VRV      
Sbjct: 133 EIEDPHNFGALLRTADAAGVHG-VLVPERRGCALTATVAKTSAGA---VEHVRVVRIGNI 188

Query: 75  ----SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 LKE    L F+ A  A + + F + L                  + I+ G E  
Sbjct: 189 VQEMKRLKE--RGLWFVGADMAGDEDMFHADLT---------------GALCIVIGSEGK 231

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           GL        + ++  P++    SLN S A  L+++E     ++   
Sbjct: 232 GLGRLVKETCDFLVRIPMHGAINSLNASVAGALLMYEARRARLLGRA 278


>gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
 gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
          Length = 261

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 53/174 (30%), Gaps = 32/174 (18%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L    +   IIL   Q   N+G + R+     +    L        S K   +   A+  
Sbjct: 107 LPARIEEDCIILDGLQDAGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLRAGMGANFH 166

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
           ++ V     +                       +LAP+ A  +L     +          
Sbjct: 167 LNIVEHC-TID----------------------MLAPRLAVPLLATSSHADAAVFDTDLR 203

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             V  I G E  G+++  +      +  P      SLN+  A  + ++E +   
Sbjct: 204 GPVAWIVGNEGAGVSDAWMEHVARTVGIPQPGGLESLNVGAATAICLFEAVRQR 257


>gi|256391520|ref|YP_003113084.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256357746|gb|ACU71243.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 269

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R+     +    L          ++   S      +   R+  +    +     
Sbjct: 132 NLGAIFRSAAALGMDAAVLTPSCADPLYRRSVRVSMGTVFALPYARL-DSWPGGL----- 185

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
              TT          L P   AI L + R      V ++ G E  GL++  +A ++  + 
Sbjct: 186 ---TTLAEHGFRTIALTPGPTAIDLRDLRFGPEDKVALLLGTEGDGLSDPALAAADMRVR 242

Query: 146 FPVNPLFPSLNI 157
            P+     SLN+
Sbjct: 243 IPMTAGVDSLNV 254


>gi|317495389|ref|ZP_07953758.1| SpoU rRNA methylase [Gemella moribillum M424]
 gi|316914448|gb|EFV35925.1| SpoU rRNA methylase [Gemella moribillum M424]
          Length = 177

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 24/157 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   Q   N+G + R    F    + L         +K   S+  ++  ID    F 
Sbjct: 32  VLILDRIQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHID---CFE 88

Query: 76  NLKEAIADLHF------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           N+   I  L        IYAT+ +                 L E      +V IIFG E 
Sbjct: 89  NID--IKQLVTEMKEFNIYATSLKADKY-------------LEELDNITGHVAIIFGNEG 133

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            G+T+E +   N ++   +     SLN+S A  +++ 
Sbjct: 134 SGVTDEILGEVNNLLKINMPGRAESLNVSIAAGIVMH 170


>gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 267

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 16/160 (10%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           P AP++   A+   ++  LVD     N+G + R+     +    L++P    P   +A  
Sbjct: 109 PGAPEVLAGARRVAVLEGLVD--HT-NLGAIFRSAAALGM-DAVLLSPDCADPLYRRAVK 164

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +S  A   +   R+     +A+           R+       L P  A      R     
Sbjct: 165 TSMGAVFSVPYARL-DPWPDALG--------AVRDAGFELLALTPSGAEDFTAARPHLLP 215

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
              ++ G E  GLT + +A ++  +  P+     SLN+  
Sbjct: 216 KAALMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLNVGA 255


>gi|261414903|ref|YP_003248586.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371359|gb|ACX74104.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302325885|gb|ADL25086.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 371

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 21/158 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNP---RDGWPSEKARSSSANADCVIDSVRVF--SNL 77
           +   N+G   R+     +  L L  P     G     AR+S+      ++ +R+    NL
Sbjct: 230 EDPRNLGACIRSSLALGVDILLL--PAKGMCGITPSVARTSAGA----LEKLRICRPDNL 283

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           + AI +L                +L                 +V +  G E  GL     
Sbjct: 284 EGAIGELKMA----------GYQILGLDADTETNLAGFDFADHVVLAVGGEDVGLPPFIK 333

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              +A++  P+ P   S N S A+ L ++E     I +
Sbjct: 334 KQCDAVLRIPMKPEAHSYNASVALSLGLYEYARLRIKA 371


>gi|255078650|ref|XP_002502905.1| predicted protein [Micromonas sp. RCC299]
 gi|226518171|gb|ACO64163.1| predicted protein [Micromonas sp. RCC299]
          Length = 234

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 20/145 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+  V R+     +  L +++  D   + K    ++       ++  + + +EAI ++ 
Sbjct: 58  GNVLAVCRSTEALGIGSLGVIS--DAGLAFKQSGRTSGGAVKWTNLEQWRSTEEAIREVK 115

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                 AR    ++ +    E    L E         +I G ER G+++E   L++  + 
Sbjct: 116 ------ARG---YRVLTTVFEGGHPL-EHYDWTVPTAVILGNERDGVSDEAKRLADGGVY 165

Query: 146 FPVNPLFPSLNIS--------QAVL 162
             +N    SLN+S         AV 
Sbjct: 166 ISMNGFTESLNVSVASSMIMHHAVQ 190


>gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens]
 gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens]
 gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
           [synthetic construct]
          Length = 353

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 27/199 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N G V R+     + +  + + R+  P +     SSA A  V+D   VFS 
Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKSSAGAMEVMD---VFST 204

Query: 77  ------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 L+        +  T               E  I+        +   ++ G E  
Sbjct: 205 DDLTGFLQTKAQQGWLVAGTVGCPSTEDPQ---SSEIPIMSCLEFLWERPTLLVLGNEGS 261

Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENS-----IVSSEKN 179
           GL+ E  A    +++       P  P   SLN+S A  +++                 + 
Sbjct: 262 GLSQEVQASCQLLLTILPRRQLP--PGLESLNVSVAAGILLHSICSQRKGFPTEGERRQL 319

Query: 180 VKEQNTPATKGELLSFLDY 198
           +++   P+ + E LS   +
Sbjct: 320 LQDPQEPSARSEGLSMAQH 338


>gi|88856437|ref|ZP_01131095.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814304|gb|EAR24168.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 266

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 17/159 (10%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           P   +L   A+  VI+  +VDP    N+G + R++         LV  +   P   +A  
Sbjct: 107 PTPTELLTDARRIVILENVVDPT---NVGAIFRSVAGIG-ADAVLVTEQCSDPFYRRAIR 162

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG- 118
            S      +   R+ +      AD   +   +        + LA ++ A+ L +      
Sbjct: 163 VSMGTVLQVPWTRIGN-----WADTRVLLTASG----FQIAALALEDGAVSLRDYAADAP 213

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           + V ++ G E  GLT E I  ++ I+  P+     SLN+
Sbjct: 214 EKVALVLGTEGHGLTREAIDAADTIVQIPMRHGIDSLNV 252


>gi|269126522|ref|YP_003299892.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311480|gb|ACY97854.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 180

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 15/148 (10%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P  G N+G + R           L  PR  W  E  R      + +     V        
Sbjct: 43  PLHGANLGTLLRTCDAVGA---CLAVPRLPWVPEALRR----GNTLRHRACVHWTGD--- 92

Query: 82  ADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
               ++     R    F+ + +   E A+ L +   +      + G E  G+ +E + L 
Sbjct: 93  -PCAWLL---KRRAEGFRVLGVEVAEGAVRLADLPPARTPTIAVLGHESRGIPDEALDLL 148

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +A +  P+     SLN++ A  L++++ 
Sbjct: 149 DAAVEIPMVGTGHSLNVAVAGSLVLYKL 176


>gi|19113497|ref|NP_596705.1| ribose methyltransferase [Schizosaccharomyces pombe 972h-]
 gi|74627042|sp|O94631|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|4456828|emb|CAB37444.1| ribose methyltransferase [Schizosaccharomyces pombe]
          Length = 301

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 22/154 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV-----IDSVRVFSNLKE 79
            +N+G V R+ +      + L    + + S     +SA A  V     + +  VF     
Sbjct: 158 PQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEVFNISHVKNPMVF----- 212

Query: 80  AIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            + +       +  T     +N   +  P +    L       +   ++ G E+ GL   
Sbjct: 213 -LRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELM-----NEPKILVLGSEK-GLRTN 265

Query: 136 EIALSNAIISFPVNPLF-PSLNISQAVLLMVWEC 168
            +   +  +S P    +  SLN+S A  ++++  
Sbjct: 266 ILTQCSHYVSIPGGDKYVDSLNVSVAAGILLYSL 299


>gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 261

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 17/152 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A  P+++L+       N+G V R+   F     R V       + +  + +  A   ++ 
Sbjct: 109 AGQPLLVLLDRVTDPHNVGAVLRSAEVFGA---RAVIAPHRHSAPETGALAKTASGALER 165

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE--RIFSGQNVGIIFG 126
                  NL E +  L             +  V    EAA+ L E     +G+ V ++ G
Sbjct: 166 QPYLRVGNLGETMEKL---------KAMGYILVGLEGEAAMTLAEGLEGTAGRPVALVLG 216

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            E  GL  +     + ++  P    F SLN+S
Sbjct: 217 AEGPGLREKTRETCDRLVRIPAAGGFGSLNVS 248


>gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
 gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
          Length = 260

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 24/163 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA------DCVIDS 70
           I+L + +   N+G + R         + +   R    +     +SA A        V + 
Sbjct: 115 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 174

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +    LKE    L F+ A                +       ++     +G++ G E  
Sbjct: 175 AKTMEELKE--RGLWFVCA----------------DMGGESMYKMNLTGPIGLVVGNEGE 216

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G+        + + + P+     SLN S A  ++ +E +   +
Sbjct: 217 GVGRLVKEKCDFVAAIPMKGEIDSLNASVAAGVLAYEIVRQRL 259


>gi|330813688|ref|YP_004357927.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486783|gb|AEA81188.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 148

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 31/164 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS----EKARSSSANADCVID--S 70
           I L  P + +N   + R    F++  L ++ P   +      ++           +D  +
Sbjct: 4   IALYQPDIPQNTAAIIRICACFDI-NLEIIKPCGYFFDKKKLDRIYL------DYLDICN 56

Query: 71  VRVFSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +R + +  +      D   I  TT  + N  K +                 +N  ++FG+
Sbjct: 57  LRFYESYDDFFSKKKDTRLILLTTKSDSNYTKFLY---------------KKNDTLVFGK 101

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  G+  E        ++  +N    S NI+ +V ++  E +  
Sbjct: 102 ESAGVPEEIHNSIQNKLTIKMNKKTRSFNIASSVAIVASEALRQ 145


>gi|294056522|ref|YP_003550180.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615855|gb|ADE56010.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 150

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 26/163 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSVR 72
           I+L +P++ +N G + R       ++L L++P     ++K    S     ++  V     
Sbjct: 4   IVLFNPEIPQNTGNIGRLCAITE-SRLHLIHPLGFTITDKHLKRSGMDYWHSLDV----H 58

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              N            A  A   +  K +      A      +    + G++FG E  G 
Sbjct: 59  HHDNWD----------AFKASP-HAPKRLWLFTTKADHSYWDVEYSNDDGLLFGNEGHGA 107

Query: 133 TN---EEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMEN 171
            +    E+      ++ P  N    SLN+S +V +  +E +  
Sbjct: 108 PDWLHHELE--GQRLTIPHKNDSLRSLNLSTSVGIAAYEALRQ 148


>gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 260

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 25/54 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    + G E  GL++     ++A I  P++    SLN + +  ++++E     
Sbjct: 203 KGCAFLIGNEGRGLSDALAEKADARIKIPMSGEVESLNAAVSAAILMFEAKRQR 256


>gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
           Y-400-fl]
 gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
           Y-400-fl]
          Length = 252

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  +NIG + R         + +   R    +    ++S+ A   +  V + +NL + I 
Sbjct: 107 QDPQNIGTLLRTAEAVGCHGVVIPGRRAAEITPAVVNASSGAVEHL-RVAMVTNLNQTIE 165

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L                V   ++      + +     + ++ G E  G+        + 
Sbjct: 166 ELQHA---------GIWVVGLEQDEQAQDIDAVDLDLPLALVIGAEGTGIARLVRERCDF 216

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++  P+     SLN + A  + ++         
Sbjct: 217 LVRLPIVGQVGSLNAAIAGSIAIYHAWRQRHRP 249


>gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 215

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            + L   +   N+G + R    F +  L          + K   S+  +   ++   V+ 
Sbjct: 73  TVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVDCFNPKVIQSTMGSITRVN--VVYK 130

Query: 76  NLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           NL E +     + Y T                    + ++    ++V ++ G E  G+  
Sbjct: 131 NLSEFLQSQDIVSYGT--------------FMDGENVYQKRLQQKSV-LVLGNEANGINP 175

Query: 135 EEIALSNAIISFPV---NPLFPSLNISQAVLLMVWECMEN 171
           E   L +  IS P    +    SLN++ A  + + E   N
Sbjct: 176 EIENLISEKISIPQFGKSQETESLNVATATAIFLSEFRRN 215


>gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
 gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
          Length = 279

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 20/164 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL + +   N G + R      +  + +   R    +     +S  A   I   RV +NL
Sbjct: 132 ILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHIPVARV-TNL 190

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +A+  L     +I+ T     +                    +   VG+I G E  G+ 
Sbjct: 191 TQAVQQLKKAGFWIFGTDMSGSDYRTW---------------NAQGAVGLIIGNEGRGMG 235

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                  + +++ P+     SLN S A  L++++   +   +S+
Sbjct: 236 EGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQAFTSRNGASQ 279


>gi|291456188|ref|ZP_06595578.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
 gi|291381465|gb|EFE88983.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
          Length = 220

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 72  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 128

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131
           NL E++ +   I A TA               A  L   +       ++FG E  G    
Sbjct: 129 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 172

Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   E       +  P+ P   SLN++    + ++E    
Sbjct: 173 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 213


>gi|320459086|dbj|BAJ69707.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 220

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 72  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 128

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131
           NL E++ +   I A TA               A  L   +       ++FG E  G    
Sbjct: 129 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 172

Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   E       +  P+ P   SLN++    + ++E    
Sbjct: 173 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 213


>gi|71734439|ref|YP_273805.1| hypothetical protein PSPPH_1553 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483942|ref|ZP_05637983.1| hypothetical protein PsyrptA_11854 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628938|ref|ZP_06461892.1| hypothetical protein PsyrpaN_28001 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651080|ref|ZP_06482423.1| hypothetical protein Psyrpa2_25584 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486137|ref|ZP_07004200.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554992|gb|AAZ34203.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159144|gb|EFI00202.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325222|gb|EFW81289.1| hypothetical protein PsgB076_07342 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330868064|gb|EGH02773.1| hypothetical protein PSYAE_12603 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330877492|gb|EGH11641.1| hypothetical protein Pgy4_11177 [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330894744|gb|EGH27405.1| hypothetical protein PSYMO_40295 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989382|gb|EGH87485.1| hypothetical protein PLA107_30467 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013128|gb|EGH93184.1| hypothetical protein PSYTB_26371 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 166

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 22/177 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +           + + K    +   D + D+ ++  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   + A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIEDLKSIL-----PLGCIPVAVELVDGARALPEYTHPDRAL-YIFGPEDGSLDQ 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATK 189
           +       ++  P       +N++  V +++++ M   I   S  +  +E+  PA+ 
Sbjct: 112 DIRDWCEDVVYIPTEGC---MNLAATVNVVLYDRMAKGINTRSGPQFGREKIDPASD 165


>gi|323436083|ref|ZP_08088232.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 283

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 21/165 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
              G  ++L D +   N+G + R    F + QL          + K   ++  +   +  
Sbjct: 136 DRSGLTVVLDDVRDPGNLGTIIRLCDWFGIKQLVCSKATVDCYNPKVVQATMGS---LTR 192

Query: 71  VR-VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V  +++++   ++             N  + V         +       + V I+ G E 
Sbjct: 193 VSIIYTDIDTYLS-------------NEDRPVFGTFMDGENIYAASLPQEGV-IVMGNEA 238

Query: 130 WGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECMEN 171
            G++     L    I+ P   +     SLN++ A  + + E    
Sbjct: 239 NGISTSIEELVTKRIAIPRFGITQATESLNVATATAICLSEFKRG 283


>gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
 gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
          Length = 265

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           IIL + +   N+G + R         + +   R    +     +SA A       +V   
Sbjct: 120 IILDNIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVTNL 179

Query: 74  FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +++     L F+ A                    V+ +    G  +G++ G E  G+
Sbjct: 180 VKTMEDLKKKGLWFVCA---------------DMDGDVMYDVNMKG-PIGLVIGNEGEGV 223

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                   +     P+     SLN S A  ++ +E +   +
Sbjct: 224 GRLVKDTCDFTARIPMKGDIDSLNASVAAGVLAYEIVRQRM 264


>gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458283|gb|AAT27606.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 231

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 20/152 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L +     N+G + R+ + F      +V   D + + K   +S  A   ++ ++V  
Sbjct: 91  ILVLENINDPGNLGTLVRSAFAFGFND-VIVEGVDIY-NHKFLQASQGAFFYVNLIKV-K 147

Query: 76  NLKEAIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           N  + +  LH   IY TT R+           E    L           ++ G E  G++
Sbjct: 148 NAVDFLKSLHNYQIYVTTLRSDAFE---YDAVENPKWL----------ALVLGNEANGIS 194

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            E   L++ +I    N  F SLN++ A  +++
Sbjct: 195 LEMEKLASKLIYIKTN--FESLNVASAGAILL 224


>gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
          Length = 262

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 11/167 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            Q++N     +++L + Q   N+G + R      +T + L        + K   S+  A 
Sbjct: 104 MQVKNQKAPHLVVLDNLQDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAV 163

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  +    +L E I +L                    +       E   +G     + 
Sbjct: 164 FRMPFL-YVEDLPEKIKELQ--------KEGIKTYAAYLRGENAYDEEDYTTG--CAFLI 212

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL +E    ++ +I  P+     SLN + A  ++++E     
Sbjct: 213 GNEGNGLRDEVADCADCLIRIPMEGEAESLNAAVAAAVLMFEAGRQR 259


>gi|194206115|ref|XP_001916608.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Equus caballus]
          Length = 1468

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 68/187 (36%), Gaps = 29/187 (15%)

Query: 3    PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARS 59
              A +L  S    +++  L+D     N+G + R    F    L LV         ++ + 
Sbjct: 1299 DRAAKLGKSISRLIVVASLID--KPTNLGGLCRTCEVFGA--LVLVVGSLHCVKDKQFQH 1354

Query: 60   SSANADCVIDSVRV-----FSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLN 112
             S +A+  +  V V        L++  A+ + I     TA++ +  +    P        
Sbjct: 1355 LSVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIIGVEQTAKSLDLTQ-YCFP-------- 1405

Query: 113  ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                  +   ++ G ER G+    I   +  +  P   +  SLN+  +  L++WE     
Sbjct: 1406 ------EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQ 1459

Query: 173  IVSSEKN 179
            ++     
Sbjct: 1460 LLKHGDT 1466


>gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 262

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +  I+ G E  G++    A +++ I  P      SLN + A  ++++E    
Sbjct: 203 DGSSAIVIGNEATGISEYTRAQADSTIKIPTRDNLESLNAAIATSIVLYEVARQ 256


>gi|82541768|ref|XP_725101.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479981|gb|EAA16666.1| RNA methyltransferase, TrmH family, putative [Plasmodium yoelii
           yoelii]
          Length = 227

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIAD 83
           NIG + R+   FN++++ +V  R+   +    S   +       +R FSN   LKE + D
Sbjct: 31  NIGNIVRSCVAFNVSEIFVVG-RNKKETSFFGSMGTHGYI---RIRYFSNMIELKEYLND 86

Query: 84  LH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +  +Y     N++             +  +     ++   +FG E  G++++ I + + 
Sbjct: 87  NNILLYGCEITNQSI-----------PITKQPFVKNKDTAFLFGNEGTGISDQIIKMCDK 135

Query: 143 IISFPVNPL-FPSLNISQAVLLMV 165
           II  P       SLN+S +  +++
Sbjct: 136 IIYIPQYGNGIASLNVSVSCAIIL 159


>gi|306837891|ref|ZP_07470751.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
 gi|306406979|gb|EFM63198.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
          Length = 228

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 125

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 126 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 170

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 171 -EATICERQALLLGTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL 221


>gi|153001281|ref|YP_001366962.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS185]
 gi|151365899|gb|ABS08899.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS185]
          Length = 241

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 19/151 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G + RA   + +           + + +    +A +     + +   + K
Sbjct: 32  LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSG----AAQYHVDTK 79

Query: 79  EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A   +     T+   A   +     +     A  L + +        +FG E   +  E
Sbjct: 80  DAGERIPLTGVTSLLAAIPADTQLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 138

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I  +NA++  P       +N++ +V ++++
Sbjct: 139 IIDKANAVVYVPT---VGCMNLAASVNVLLY 166


>gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
           1251]
          Length = 226

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       NIG + R  +   +  +         P E    +S  A   +    +  
Sbjct: 85  VLVLSGVTDVGNIGAIIRTAYALGVDGVIACG-VKSLPIEAIVRTSTGALFDMPFA-IEQ 142

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+ + + DL     T+                A  + + +   Q   +  G E  GLT  
Sbjct: 143 NVLDVLNDLKMSGFTS----------YGADMGATDIRD-VKIKQKRALFLGSEGEGLTQR 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLM 164
             +  + ++S  ++  F SLN+S A  ++
Sbjct: 192 VSSKLDELVSIKMSHEFDSLNVSVAGAIL 220


>gi|330840210|ref|XP_003292112.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum]
 gi|325077666|gb|EGC31364.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum]
          Length = 323

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 25/177 (14%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            ++N   G  ++L D +   N+G + R       + + L        + +   SS  ++ 
Sbjct: 141 PIKNKPFGLSVVLEDCRSLHNVGSIFRTSDGSGFSHIYLCGLTGTPLNTQVTKSSLGSEE 200

Query: 67  VI------DSVRVFSNLKEAIADLHFIYA---TTARNRNNFKSVLAPKEAAIVLNERIFS 117
           ++      DS+ V   LKE       I     T+     N   +L+  E    +      
Sbjct: 201 MVEWSFSNDSLGVVKKLKE---HNVLIIGIEQTS-----NSVPLLSSLEYIEKMALNNNM 252

Query: 118 G--------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                    + + ++ G E  G++   I   + I   P+     SLN+S    ++ +
Sbjct: 253 ENNMDNNKYRPICVVMGNEIAGISEHVINECDIICELPMLGNKNSLNVSITFGIVSY 309


>gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa]
 gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa]
          Length = 359

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +++L   Q   N+G + R+        + L+       + K   +S  A      + + S
Sbjct: 202 ILVLEGIQDPGNLGTLLRSALALGWGGVFLLPGCCDPFNSKVLRASRGASF---QIPIVS 258

Query: 76  ----NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L EA+ D + +         N KS   P           F+   + ++ G E  G
Sbjct: 259 GSWYHL-EALKDEYQMKMLAGHPDCNDKS--RPVSQLSQGLADCFARVPLCLVLGSEGHG 315

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           L+ +       ++S P+   F SLN++ A  + ++   
Sbjct: 316 LSEKAQREC-ELLSIPMAGEFESLNVAVAGGIFLYMLQ 352


>gi|153008909|ref|YP_001370124.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151560797|gb|ABS14295.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 275

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 26/172 (15%)

Query: 2   TPYAPQLQN--SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKAR 58
            P    + +   AK  V++L      +N+G + R    F      L++         KA 
Sbjct: 115 PPSLQAMLDTLPAKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDDTCCDPLYRKAI 173

Query: 59  SSSANADCVIDSVRVFS--NLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
             S  A      V  F   ++ E   A+ D  F             ++LA   ++ +   
Sbjct: 174 RVSVGATL---KVPYFHGGSIDEIIAALGDADF-------------NLLALSPSSSLSVY 217

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                    ++ G E  GL    +         P++  F SLN++ A  + +
Sbjct: 218 DATKHGRQALLLGTEGEGLPPRLLEKLQTA-RIPMSTAFDSLNVATASGIAL 268


>gi|139438050|ref|ZP_01771603.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC
           25986]
 gi|133776247|gb|EBA40067.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC
           25986]
          Length = 199

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 53/200 (26%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L  P++  N G + R         L LV P      +K    +         V  ++ 
Sbjct: 4   IVLYAPEIPANTGNIGRTCVVTG-AHLHLVEPLGFSLDDKTVRRAGLGYWQNLDVTTYAG 62

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            ++ +A      A      +    +L  K            G    ++FG E  G+  E 
Sbjct: 63  WEDFLARNGLSPA------DERLHLLTKKARRTYAQSTYRDGDY--LVFGSESSGIPEEL 114

Query: 137 IALSNAII-SFPV----------------------------------------NP-LF-- 152
           +A +       P+                                        NP  +  
Sbjct: 115 LAAAPERCERIPMLRDCDSLDNAEAWEAHEESLGHTEDDHEAILRQDICGNFVNPDDYRI 174

Query: 153 PSLNISQAVLLMVWECMENS 172
            +LN+S +  ++++E +  +
Sbjct: 175 SALNLSNSAAIVLYEALRQT 194


>gi|221106776|ref|XP_002159774.1| PREDICTED: similar to rRNA methyltransferase 1, mitochondrial,
           partial [Hydra magnipapillata]
          Length = 227

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 27/160 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGW-PSEKARSSSANADCVIDSVRVFSN----- 76
           Q   N+G + R+   F + +  +VN ++    +      S+ A   ++   V+S      
Sbjct: 79  QDPMNLGAIIRSATYFGVDK-IIVNEKNSCGLTATVSKVSSGA---MEWASVYSTRDMQR 134

Query: 77  -LKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            LK+ +  D +    T  ++    K         +     +   +   ++ G E +G+  
Sbjct: 135 LLKDLLNYDWNL-IGTVTKDYTQSK---------VHSCHDVQLSKRNVLVIGNEGFGMNP 184

Query: 135 EEIALSNAIISFPV-NPLFP----SLNISQAVLLMVWECM 169
              ++   +++ P  N   P    SLN+S A  +++   M
Sbjct: 185 LITSICTKLVTIPSFNDRLPEGLDSLNVSVATGILLHSLM 224


>gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
           BAA-613]
          Length = 274

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + S + + II G E  GL    IA  +  +  P++    SLN++ A  +  W+    
Sbjct: 218 LMSEEKLAIILGTEGDGLAAGTIAGCDYTVRIPMSHGVDSLNVAAASAVAFWQLGRR 274


>gi|82545036|ref|YP_408983.1| methyltransferase [Shigella boydii Sb227]
 gi|81246447|gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320186384|gb|EFW61118.1| putative methyltransferase [Shigella flexneri CDC 796-83]
 gi|332092607|gb|EGI97679.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 3594-74]
          Length = 345

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++     ++ S+    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAELVQSITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
           DSM 7489]
 gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
           DSM 7489]
          Length = 245

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N G + R      +  + +        +     +SA A   +   +V +++K+A+   H+
Sbjct: 109 NFGAIIRTAECTGVDGIIIQKKGAAPVTADTIKTSAGAAFKVPIAKV-NHIKDAV---HY 164

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           + A+  +       ++A  E        +   +   II G E  G++   +  ++     
Sbjct: 165 LQASGVK-------IIAASEKTENTIYDVSFKEASAIIMGSEDVGISPSILKAADHTAKL 217

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIV 174
           P+     SLN+S A  + ++E +   + 
Sbjct: 218 PLLGEIESLNVSVACGVFLYEAVRQRLA 245


>gi|260565194|ref|ZP_05835678.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260565921|ref|ZP_05836391.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261758764|ref|ZP_06002473.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|260151262|gb|EEW86356.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155439|gb|EEW90519.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261738748|gb|EEY26744.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
          Length = 242

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 81  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 139

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 140 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 184

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 185 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 235


>gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 276

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 219 -EATICERQALLLGTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 269


>gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 263

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            QN+  I G E  G+++  +  S+ ++S P+     SLN+  A  ++++E     +   
Sbjct: 203 DQNIAFILGNEGRGISSTLLKKSDQMLSIPMIKNVESLNVGVAASIVIYEHARQFLFQQ 261


>gi|282907859|ref|ZP_06315694.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282328243|gb|EFB58521.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
          Length = 110

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           + +  ++ I+ G E  G++       +  I  P+     SLN S A  LM++E       
Sbjct: 47  LEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFRKRHD 106

Query: 175 SSE 177
             E
Sbjct: 107 VGE 109


>gi|239978462|ref|ZP_04700986.1| rRNA methylase [Streptomyces albus J1074]
 gi|291450358|ref|ZP_06589748.1| rRNA methylase [Streptomyces albus J1074]
 gi|291353307|gb|EFE80209.1| rRNA methylase [Streptomyces albus J1074]
          Length = 267

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 10/133 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            N+G   R      +    L++PR   P   +A   S  A   +   R+      A    
Sbjct: 131 ANVGAAFRNAAALGV-DAVLLSPRCADPLYRRAVKVSMGAVLQLPWTRLPDWPAGA---- 185

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   R+     +      +  +        + + ++FG E  GLT   +A ++  +
Sbjct: 186 ----GLLGRHGFLTAAFCLGDRSITLDELAARRPEKLALMFGTEGDGLTPGALAAADTWV 241

Query: 145 SFPVNPLFPSLNI 157
             P++    SLN+
Sbjct: 242 RIPMDAGIDSLNV 254


>gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
 gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 318

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 31/174 (17%)

Query: 10  NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DC 66
           ++ + P+I+ L       N+G + R++  F      +V      P  +A   +A A    
Sbjct: 164 DNHEDPLIVALDGVTDPRNLGAIVRSVSAFG-GHGVVV------PERRAAGMTAGAWKSS 216

Query: 67  VIDSVRV----FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
              + R      +NL  A+         +    A   +   +V   +E            
Sbjct: 217 AGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAA---DGEHTVEDLEEL----------D 263

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             V I+ G E  GL        +  +   +     SLN   A  ++++E     
Sbjct: 264 GPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRR 317


>gi|308234552|ref|ZP_07665289.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium vaginae DSM 15829]
 gi|328944150|ref|ZP_08241615.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327492119|gb|EGF23893.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 272

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +   + FG E  GL+   I   + ++  P+     SLN++ +  ++ W+ 
Sbjct: 221 KRCALCFGNESKGLSTPVIDACDQLVMIPMKHGVDSLNVAASSAVLFWDM 270


>gi|256380292|ref|YP_003103952.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
 gi|255924595|gb|ACU40106.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
          Length = 248

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 12/172 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M P A  L++  +G V++L       N+GM+ R      +    +V PR G  S      
Sbjct: 87  MAPLALALESRPRG-VLLLDGITTPANVGMILRTATAAGVEG--IVVPRRGVASIDPLVV 143

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            A+A             +  +          A+ R     + A   +A          + 
Sbjct: 144 KASAGVA---------FRAPVLRCGTAAEAAAQLRAAGYPLFALDASAKRSVYAAELPER 194

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              + G E  G+++         +S P+     SLN++ A  ++ +E +   
Sbjct: 195 AAFVLGSETAGVSDGVREHVTDWLSIPMAAGVESLNVASAAAVLCFEVVRRR 246


>gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum]
          Length = 282

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 23/179 (12%)

Query: 15  PVIILV-DPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA--DCVIDS 70
           P+ +L    Q   N+G + R       T  L  V   D +  +  R+++ +A    +I  
Sbjct: 116 PLFVLADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKALRAAAGSAFRLPIIAG 175

Query: 71  VRVFSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             V   L++     +  + A              P E            Q V +  G E 
Sbjct: 176 SSVADELQKLYRQGVRLVTA--------DIHGDTPYE-------AFDWRQPVLLWLGSEG 220

Query: 130 WGL---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
            GL   T++      A +  P+     SLN++ A  ++++E       SS   +  + +
Sbjct: 221 HGLRSLTDDFKHRLAARLVIPMEGQVESLNVAVAGAILLYEARRQRRQSSADQLTGETS 279


>gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
 gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
          Length = 287

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 57/164 (34%), Gaps = 25/164 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRV 73
           I L   +   N+G + R       + + L+       S +   ++     A  ++ +   
Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRATMGSIFAMPLLRASE- 193

Query: 74  FSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                E +         +  +  +   +++++              + G+ V ++ G E+
Sbjct: 194 ----AEFLTWSKKTAPLVVGSHLKGSVDYRTI-------------AYKGRPVVLLMGNEQ 236

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            GL +        +   P      SLN++ A  +M++E   + +
Sbjct: 237 AGLPDTLAQSCGKLARIPQTGRADSLNLAIATGVMLFEARRHLL 280


>gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2207]
 gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2207]
          Length = 231

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 27/163 (16%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW--PSEKARSSSANADC------VID 69
           +L       N+G   R+     +    +V P+D     +   +  +  A        V +
Sbjct: 86  VLDGVTDPHNLGACLRSADGAGVH--AVVVPKDNSVGLTPVVQKVACGAAESVPLVMVTN 143

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             R    L++A A   ++                    A      I     + ++ G E 
Sbjct: 144 LTRTLEKLQQAGA---WVVGAAG--------------EAEQFIYDIDLTGPLVLVMGAEG 186

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G+        + +   P+     SLN+S A  + ++E +   
Sbjct: 187 KGIRQLTRKQCDYLAKLPMAGEVSSLNVSVATGVCLFEIVRQR 229


>gi|306843065|ref|ZP_07475688.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
 gi|306286744|gb|EFM58294.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
          Length = 203

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 42  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 100

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 101 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 145

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 146 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 196


>gi|306844590|ref|ZP_07477177.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
 gi|306275034|gb|EFM56797.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
          Length = 228

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 125

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 126 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 170

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 171 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL 221


>gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 264

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 33/173 (19%)

Query: 11  SAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           S K P+I++ +  +   N+G + R     N+  + + NP+    +     SS        
Sbjct: 111 SNKNPLILIAESLEKPGNVGALLRTADAANVDAVIIANPKSDLYNSNIIRSSVG------ 164

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG----------Q 119
              VF+N             T+       + +   KE  I +                 +
Sbjct: 165 --CVFTN--------QIAVGTS------EEIITFLKENKISIYAATLQNSNKYHLEDYKK 208

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              I+ G E  GL+      +   I+ P+     S+N+S A  ++++E     
Sbjct: 209 PSAIVVGTEATGLSEIWRDKATQNINIPMQGKIDSMNVSVAAAIVIFEAKRQR 261


>gi|261212397|ref|ZP_05926682.1| rRNA methylase [Vibrio sp. RC341]
 gi|297580425|ref|ZP_06942352.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|260838328|gb|EEX64984.1| rRNA methylase [Vibrio sp. RC341]
 gi|297536071|gb|EFH74905.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 170

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           VII L +P+   N+G V RA   +N TQ+R         +    + +        +S   
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++  + DL      TA   +  K V                 +    +FG E   L 
Sbjct: 59  IGLVE--MDDL------TAGLDSKVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E +  ++ ++  P +     +N++  V +++++ +  S+   +   +
Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155


>gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 268

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           AK  +++L + Q   N+G + R+     +T + L        + K   S+  +   +  +
Sbjct: 116 AKPLILVLENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFI 175

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               ++ E +             + N     A         +          + G E  G
Sbjct: 176 -YVESIPEVLE----------TLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNG 224

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           LT E    ++  I  P+     S+N + +  ++ +E     
Sbjct: 225 LTKETADAADTYILIPMKGEVESMNAATSSAILTFEASRQR 265


>gi|297491399|ref|XP_002698855.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Bos taurus]
 gi|296472224|gb|DAA14339.1| TAR (HIV-1) RNA binding protein 1 [Bos taurus]
          Length = 890

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 27/184 (14%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
             A +L  S    +++  L+D     N+G + R    F    L +         ++ +  
Sbjct: 721 DRAAKLGKSISRLIVVASLID--KPTNLGGLCRTCEVFGAAALVM-GSLQCVRDKQFQHL 777

Query: 61  SANADCVIDSVRV-----FSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNE 113
           S +A+  +  V V        L++  A+ + I     TA++ +  +    P         
Sbjct: 778 SVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTR-YCFP--------- 827

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                +   ++ G ER G+    I   +  +  P   +  SLN+  +  L++WE     +
Sbjct: 828 -----EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQL 882

Query: 174 VSSE 177
           +   
Sbjct: 883 LKQG 886


>gi|227495981|ref|ZP_03926292.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226834469|gb|EEH66852.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 287

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83
           N+G   R+     +    LV P    P   ++   S      +   R+  +  L E  A 
Sbjct: 146 NVGAAFRSAAALGI-DAVLVTPHCADPLYRRSVRVSMGTVFQVPWTRIDHWPALDELHAG 204

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIFGRERWGLTNEEIALSN 141
              + A      +                    SG    V ++ G E  GL    IA ++
Sbjct: 205 GFTVAALALSEDSVS--------LGEFSASPACSGADSRVAVVLGTEGDGLAPRTIAAAD 256

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A++  P+     SLN++ A  +  WE    S
Sbjct: 257 AVVRIPMAGAVDSLNVAAAAAVAFWELRVRS 287


>gi|194679306|ref|XP_614988.4| PREDICTED: TAR (HIV-1) RNA binding protein 1, partial [Bos taurus]
          Length = 1407

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 27/184 (14%)

Query: 3    PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
              A +L  S    +++  L+D     N+G + R    F    L +         ++ +  
Sbjct: 1238 DRAAKLGKSISRLIVVASLID--KPTNLGGLCRTCEVFGAAALVM-GSLQCVRDKQFQHL 1294

Query: 61   SANADCVIDSVRV-----FSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNE 113
            S +A+  +  V V        L++  A+ + I     TA++ +  +    P         
Sbjct: 1295 SVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTR-YCFP--------- 1344

Query: 114  RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                 +   ++ G ER G+    I   +  +  P   +  SLN+  +  L++WE     +
Sbjct: 1345 -----EKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQL 1399

Query: 174  VSSE 177
            +   
Sbjct: 1400 LKQG 1403


>gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
 gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
          Length = 251

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 12/150 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   ++  +   +    V  ++ E I 
Sbjct: 114 QDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLP--VVKGDVAEWI- 170

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                     R +     V        V    I    +  ++ G E  G+  E + ++  
Sbjct: 171 ---------TRLKEQGVPVYGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTE 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  P+     SLN++ A  ++++      
Sbjct: 222 NVYIPIYGQAESLNVAVAAGILLYSLQTAQ 251


>gi|46191126|ref|ZP_00206684.1| COG0219: Predicted rRNA methylase (SpoU class) [Bifidobacterium
           longum DJO10A]
 gi|189439831|ref|YP_001954912.1| hypothetical protein BLD_0968 [Bifidobacterium longum DJO10A]
 gi|227546389|ref|ZP_03976438.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|312133236|ref|YP_004000575.1| cspr [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482584|ref|ZP_07941599.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688607|ref|YP_004208341.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690593|ref|YP_004220163.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428266|gb|ACD98414.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium longum
           DJO10A]
 gi|227213370|gb|EEI81242.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517295|emb|CBK70911.1| Predicted rRNA methylase (SpoU class) [Bifidobacterium longum
           subsp. longum F8]
 gi|311772439|gb|ADQ01927.1| CspR [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916006|gb|EFV37413.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455449|dbj|BAJ66071.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459943|dbj|BAJ70563.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 220

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 72  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 128

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131
           NL E++ +   I A TA               A  L   +       ++FG E  G    
Sbjct: 129 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 172

Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   E       +  P+ P   SLN++    + ++E    
Sbjct: 173 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 213


>gi|262276838|ref|ZP_06054631.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium
           HIMB114]
 gi|262223941|gb|EEY74400.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium
           HIMB114]
          Length = 147

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 19/158 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRV 73
           I L  P + +N   + R      L +L ++ P     +EK              +    +
Sbjct: 4   IALYQPDIPQNTAAIIRTCACLGL-KLEIIKPAGFVLNEKKLDRIYM-----DYLKDCEI 57

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F          H  + T  +++   + +L   +      + IF   +  ++FG E  G++
Sbjct: 58  F---------YHESFDTFVKSKKQKRIILFTTKTTNNYTKFIFKKNDT-LLFGSESKGVS 107

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E        ++ P+     SLN++ +V +   E +  
Sbjct: 108 EEVHGTIKNKLNIPIKNNTRSLNLATSVAIASSEALRQ 145


>gi|262403692|ref|ZP_06080250.1| rRNA methylase [Vibrio sp. RC586]
 gi|262350196|gb|EEY99331.1| rRNA methylase [Vibrio sp. RC586]
          Length = 170

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           VII L +P+   N+G V RA   +N TQ+R         +    + +        +S   
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++  + DL      TA   +  K V                 +    +FG E   L 
Sbjct: 59  IGLVE--MNDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E +  ++ ++  P +     +N++  V +++++ +  S+   +   +
Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155


>gi|239622392|ref|ZP_04665423.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514389|gb|EEQ54256.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 223

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 75  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 131

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131
           NL E++ +   I A TA               A  L   +       ++FG E  G    
Sbjct: 132 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 175

Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   E       +  P+ P   SLN++    + ++E    
Sbjct: 176 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 216


>gi|328467013|gb|EGF38111.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 122

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
           I+L +P +  N G +AR     N + L L+ P      +K    +         VR+   
Sbjct: 5   IVLFEPLIPANTGNIARTCAATN-SYLHLIKPLGFETDDKHLRRA--GLDYWAKVRIIYH 61

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +L + +A        T ++  +   +    +      +   +  +   +FG+E  GL 
Sbjct: 62  DSLDDFMA--------TVKDPQHLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLP 112


>gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 315

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           +IL +     N+G V R++  F    + +   R    +  A  +SA     +   RV + 
Sbjct: 166 VILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVARVTNV 225

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E     + +    A   +              L+        V I+ G E  G++
Sbjct: 226 TRTVQEFQQAGYQVVGLDAGGEHT-------------LDTYTGGKDPVVIVIGSEGKGIS 272

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  + I+S P+     SLN S A   ++ E       + 
Sbjct: 273 RLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQRRAAK 315


>gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125]
 gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125]
          Length = 251

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 52/153 (33%), Gaps = 24/153 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVR-----VFSN 76
           Q   N+G + R      ++   +V+       + K   +S  +   +  ++         
Sbjct: 116 QDPGNVGTMIRTCDAAGMSA-VIVSEGSVDIYNSKVVRASQGSIFHLPVIKGDLHGWVDQ 174

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            KEA   +  ++ T     + +                I       ++ G E  G+  E 
Sbjct: 175 FKEA--GIP-VFGTALEGGSTY--------------TAIEPQARFALLVGNEGEGVEPEL 217

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +  ++  +  P+     SLN++ A  ++++   
Sbjct: 218 LDKADQNLYIPLYGKAESLNVAVATGILLYYLR 250


>gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
           ATCC 33656]
 gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
           ATCC 33656]
          Length = 263

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 11/155 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G + R      ++ + +        + K   S+  +   +    +  +L
Sbjct: 115 VLESIQDPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPF-YITDDL 173

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            E I             ++   S+ A         +R       G + G E  GL++E  
Sbjct: 174 PETIE----------YAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIA 223

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +++  I  P+     SLN + +  L+++EC    
Sbjct: 224 DMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258


>gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
 gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
          Length = 254

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R      L  + L        + K   ++  +   I  VR    L E + 
Sbjct: 118 QDPGNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAAQGSHFHIPVVR--EELTECVD 175

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      ++ T               E A+  ++   +G    II G E  G+  + +A
Sbjct: 176 FLQDQGVPVFGTAL------------DEDAVPYSDIHHTGA-FAIIMGNEGSGIQPQLLA 222

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +++  I  P+     SLN++ A  ++++
Sbjct: 223 MTDQNIIIPILGQAESLNVAVATGIVLY 250


>gi|88809150|ref|ZP_01124659.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
 gi|88787092|gb|EAR18250.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
          Length = 291

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 22/187 (11%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           L +    P  +L     Q   N+G + R     ++ Q   +         K   S+A A 
Sbjct: 114 LPSPGPQPNFVLALDRLQDPGNVGTLLRTALAADVEQ-VWMGAGADPLGSKVVRSAAGAI 172

Query: 65  ------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSV-LAPKEAAIVLNE---R 114
                    +   +    L  A+ +        AR R       L P  A  +  E   +
Sbjct: 173 LTLPLRRFGLTDAQGVEQLATALKE--------ARTRGLQVVATLVPNAATGLQVEPYWQ 224

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +   +   ++ G E  GL    +A  +  ++ P      SLN++ A + ++ E    ++ 
Sbjct: 225 LDWCRPTVLVLGNEGSGLHPRLLACCSHGVTLPHGRKVESLNVAAAAVPLLLERRRATMT 284

Query: 175 SSEKNVK 181
           +  +   
Sbjct: 285 APMQQSG 291


>gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
 gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
          Length = 405

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 16/162 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIA 82
            +N+G + R  +   +  + +              +SA A  ++   +    L   + + 
Sbjct: 244 PQNVGSIIRTAYYLGVDFIVIPESESARLGPATAKASAGALDLLTIYKTDDTLTFLDNVR 303

Query: 83  DLHF-IYATTARN--------RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + +  T++R         ++  +  L  K         + +   + ++FG E  G+ 
Sbjct: 304 KSGWNVVTTSSRMSEDELNSMKSKHRPALENKYIEPQELPALMNQTPMLMVFGSEGAGVR 363

Query: 134 NEEIALSNAIISFP-----VNPLFPSLNISQAVLLMVWECME 170
                 S+ ++  P      + +  SLN+  A  L+V +C E
Sbjct: 364 TNIKFRSDYLVGLPKGRLETDEVVDSLNVGVAASLLVSKCFE 405


>gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 264

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 51/149 (34%), Gaps = 10/149 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  +N G + R    F +  + +   R    +    ++S+ A   ++  +V         
Sbjct: 122 QDPQNFGTLLRTAEVFGIGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVT-------- 173

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             +     +      +  +    + +  +   +     + ++ G E  G+        + 
Sbjct: 174 --NLARTASKLKEYGYWVLGLEYDESSSVIWDVDLRIPICLVVGSEGSGIRELVRKRCDL 231

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  P      SLN + A  + ++E  ++
Sbjct: 232 LVKIPQAGRIGSLNAAVAGSIALYEIYKS 260


>gi|257068745|ref|YP_003155000.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256559563|gb|ACU85410.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 275

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 24/141 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV------FSNLKE 79
           N+G   R+     +    LV P+   P   ++   S      +   R+        +L+E
Sbjct: 141 NVGACFRSAAAMGV-DAVLVTPQCADPLYRRSIRVSMGTVFQVPWTRIENWPASVHDLQE 199

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIA 138
           A     ++ A            L   E AI L++      +N+ ++ G E  GL      
Sbjct: 200 A----GYVVA-----------GLTLGEGAITLDDLAAEDHENLALVLGSEGHGLMGSTDR 244

Query: 139 LSNAIISFPVNPLFPSLNISQ 159
             +  ++ P+     SLN++ 
Sbjct: 245 ALDRRVTIPMQHGVDSLNVAA 265


>gi|254429253|ref|ZP_05042960.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
 gi|196195422|gb|EDX90381.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
          Length = 230

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 68/221 (30%), Gaps = 24/221 (10%)

Query: 1   MTPYA-----PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE 55
           MTP         L        +I+       NI  + R      +  +  V P++   + 
Sbjct: 1   MTPERYRRICETLDRRQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKN--RAR 58

Query: 56  KARSSSANADCVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
            A  ++  +   +   +   +     E       + A  A   ++               
Sbjct: 59  MAAGTAMGSQRWVQVHKRDESTDVIRELQGQGVQVLA--AHLSDDAIPYREVDYT----- 111

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 +   ++ G E++G+++E  ++ +  ++ P+  +  S N+S A  +++ E  E  
Sbjct: 112 ------RPTALLLGTEKFGVSDEVASVVDQNVTIPMMGMVESFNVSVAAAIILSEACEQR 165

Query: 173 IVSSEKNVKEQNTPATKGELLSF-LDYLEISLEERGYFRPV 212
                 +            L  +    +    +  G   P 
Sbjct: 166 RAKGFYDQPRVAADRYHELLFRWGYARIARLCDAHGVPYPE 206


>gi|170767257|ref|ZP_02901710.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
 gi|170123591|gb|EDS92522.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
          Length = 345

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +    + + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTTLPEKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  ++         LNIS A  +++ E    
Sbjct: 311 NDVRVNIDGTGNVAGLNISVATGVLLAEWWRQ 342


>gi|167761866|ref|ZP_02433993.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
           43183]
 gi|167700236|gb|EDS16815.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
           43183]
          Length = 270

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 30/167 (17%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  V+I  +VD     NIG + R+     +  + L        + +A   S  +  ++ 
Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVP 175

Query: 70  SVRVFSNLKEA----IADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
                    +A    ++DL F     A T    +N   +  P   A            + 
Sbjct: 176 W-----TWLDAPIGRLSDLGFRTAAMALT----DNSIPIDNPALTAE---------PKLA 217

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           II G E  GL+ E IA S+ ++  P++    SLN++ A  +  W+  
Sbjct: 218 IIMGTEGDGLSRETIAGSDYVVRIPMSHGVDSLNVAAAAAVAFWQLR 264


>gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
 gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
          Length = 283

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 15/158 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68
           + +G V++L       N+G + R+   F +    +V      P      +  ++ A  ++
Sbjct: 129 AQEGIVLVLDQITDPHNVGAIMRSAAAFAVK--AIVTTARHSPEATGVLAKSASGALELV 186

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             + +  NL  A+ +L+        +R      L    A       I   Q + ++ G E
Sbjct: 187 P-LVLVQNLARALTELN--------DRGFMTVGLD--SAGGEDLAAIQLRQPLALVLGAE 235

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             GL        NA+    +     SLN+S A +L ++
Sbjct: 236 GKGLRQLTRETCNAVARLDMPGDIKSLNVSNAAVLALY 273


>gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 322

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 19/171 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             + +S    ++ L +     N+G V R++  F    + +   R    +  A  +SA A 
Sbjct: 163 MAMGSSEPALLVALDNITDTRNLGAVIRSVAAFGGHGVLIPERRSASITAVAWRTSAGAA 222

Query: 66  CVIDSVRVFS---NLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   R  +    L + A A +  +                      V  +        
Sbjct: 223 ARLPVARATNLNRTLLDWAKAGVQLVG---------------LDAEGDVSLDDYDGTGPT 267

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I+ G E  GL+       ++I+S P+     SLN S A  +++ E     
Sbjct: 268 VIVVGSEGKGLSRLVRENCDSILSIPIASEVESLNASVAAGVVLSEFARQR 318


>gi|218960735|ref|YP_001740510.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729392|emb|CAO80303.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
          Length = 246

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 19/165 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA 64
           P+ +  A      L D     N+G + R    FN+  L L +P+     S K   +S   
Sbjct: 96  PKPRKIAFKKAFYLDDISDPGNLGTIFRIAAAFNIDCLIL-SPKTCEISSPKVIRASLG- 153

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGI 123
                          A+  + F +    + +     + A      I L       +   +
Sbjct: 154 ---------------AVYKVPFFFCEMEKLQELKAHIFALDMQGKIPLTNFAPPSEPYIV 198

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G E  G+++  + ++   +  P+     SLN+S +  ++ +  
Sbjct: 199 ALGNEAKGISSSILKIAEETLCIPMPGEMESLNVSVSSAILAYTL 243


>gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 249

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 17/151 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK--EAIA 82
            +N G + R      +  + + + R    S     +SA A   +   RV + ++  + + 
Sbjct: 105 PQNCGALMRTALCAGVNGVIMPDKRSSPLSPAVSKASAGALEHMPVARVVNLVRSMQYLK 164

Query: 83  D-LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           D   + +   AR                             ++ G E  GL        +
Sbjct: 165 DQGVWFFGLDARASGTVW--------------EADLTGPAAVVVGNEGKGLRPLVRKECD 210

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++S P      SLN S A  L ++E M   
Sbjct: 211 QLVSIPQAGPLGSLNASVAGALSMYEVMRQR 241


>gi|148240081|ref|YP_001225468.1| rRNA methylase [Synechococcus sp. WH 7803]
 gi|147848620|emb|CAK24171.1| rRNA methylase [Synechococcus sp. WH 7803]
          Length = 291

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 22/188 (11%)

Query: 7   QLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L  +   P  +L     Q   N+G + R     ++ Q   +         K   S+A A
Sbjct: 113 SLPAAGPHPNFVLALDRLQDPGNVGTLLRTALAADVEQ-VWMGAGADPLGSKVVRSAAGA 171

Query: 65  -------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN----E 113
                         +    L  A+ D        AR R          +AA  L      
Sbjct: 172 LLSMPYQRFGPTDAQGVEQLATALKD--------ARTRGLQVVATLVPDAAAGLPVQPYW 223

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++   +   ++ G E  GL  + +   +  ++ P      SLN++ A + ++ E    ++
Sbjct: 224 QLDWCRPTVLVLGNEGAGLHPQLLGCCSHGVTLPHGRKVESLNVAAAAVPLLLERRRATM 283

Query: 174 VSSEKNVK 181
            +  +   
Sbjct: 284 TAPMQQSG 291


>gi|90021356|ref|YP_527183.1| von Willebrand factor, type A [Saccharophagus degradans 2-40]
 gi|89950956|gb|ABD80971.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 256

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           L E   +G  V  + G E  GL+++  A+ N  +S P+     SLN++    L+ ++
Sbjct: 198 LGEEPLTGAKV-FVLGNETEGLSSDVRAICNKHVSIPMLNNVESLNVAVTASLIAFQ 253


>gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
           YIT 12066]
 gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
           YIT 12066]
          Length = 254

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             + I+ G E  G+        + I   P+     SLN+S A  + ++E +   
Sbjct: 198 GPLAIVMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVAAGIALFEAVRQR 251


>gi|227497644|ref|ZP_03927862.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226832915|gb|EEH65298.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 306

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +      G E  GL+ E +  ++A++S P+     SLN++ A  +  +
Sbjct: 234 ARPTAWWLGNEAHGLSPESLTQADAVVSIPLYGQAESLNVATAAAVCFY 282


>gi|225351757|ref|ZP_03742780.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158101|gb|EEG71384.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 221

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    N +
Sbjct: 73  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 129

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
             +  +    I A TA               A  L   I       ++FG E   + +  
Sbjct: 130 NLVESMPNSRIIAFTA--------------HATKLYTDIEYKPTDILLFGPEPGNIPDPM 175

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + +A  +    +  P+ P   SLN++    + ++E       +  +
Sbjct: 176 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFAGGQ 221


>gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 252

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 24/158 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
           ++IL   +   N+G + R      +  + +   R    +     +SA A   I+ V V  
Sbjct: 105 ILILDGIEDPHNLGSILRTADAAGVHGVIIPKRRAVGLTSTVAKTSAGA---IERVPVVQ 161

Query: 75  -SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            SNL  AI +L     +I+ T  +  +  +                 +   VG+I G E 
Sbjct: 162 VSNLVNAIKELKERGLWIFGTDMKGTDYRRW---------------DAKGAVGLIIGNEG 206

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G+        + +++ P+     SLN S A  L++++
Sbjct: 207 KGMARLTKDNVDEMLTIPMVGEIQSLNASVAAGLLIYQ 244


>gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
 gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
          Length = 248

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   ++L   Q   N+G + R    F  + +          + K   ++  +   +  V 
Sbjct: 103 KEINLVLDGVQDPGNLGTIIRTADWFGFSNIICSKNTVDVYNPKVVQATMGS---LARVN 159

Query: 73  V-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIFGRE 128
           V + +L        ++ A              PK   ++  + I+     +   +I G E
Sbjct: 160 VSYVDLPA------YLIA-----------QQLPKFGTLLDGKNIYHQDWPEAGFLILGSE 202

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             G+++E I+L +  ++ P      SLN+  A  +   E    S+
Sbjct: 203 GNGISDEIISLLDGSVTIPKLGQTESLNVGIAAAICCSEIKRKSL 247


>gi|110833674|ref|YP_692533.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110646785|emb|CAL16261.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 230

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 62/175 (35%), Gaps = 25/175 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             NI  + R      +  +  V P++   +  A  ++  +   +   +   +        
Sbjct: 30  PHNIAAIVRTCDAVGILDVHAVLPKN--RARMAAGTAMGSQRWVQVHKRDESTD------ 81

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGLTNEEIA 138
             +       R      +  +  A  L++           +   ++ G E++G+++E  +
Sbjct: 82  --VI------RELQGQGV--QVLAAHLSDDAIEYRQVDYTRPTALLLGTEKFGVSDEVAS 131

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
             +  ++ P+  +  S N+S A  +++ E  E        + + +   A   ELL
Sbjct: 132 AVDQNVTIPMMGMVESFNVSVAAAIILSEACEQRRAKGFYD-QPRVAAARYHELL 185


>gi|119477702|ref|ZP_01617852.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
           proteobacterium HTCC2143]
 gi|119449205|gb|EAW30445.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
           proteobacterium HTCC2143]
          Length = 239

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               ++ G E+ GL+ + +  ++  I+ P+  +  S N+S A  +++ E      ++ 
Sbjct: 112 APTVLLMGAEKNGLSADGLEAADIHITVPMVGMVESFNVSVAAGIILNEARHQRQIAG 169


>gi|294790826|ref|ZP_06755984.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
 gi|294458723|gb|EFG27076.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
          Length = 284

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + +IFG E  GL+   +A ++  +  P++    SLN++ +  +  +
Sbjct: 231 RLALIFGTEGDGLSRRTLAAADLTVKIPMSHQVDSLNVAASSAVAFY 277


>gi|289644294|ref|ZP_06476380.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
 gi|289505906|gb|EFD26919.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
          Length = 310

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 12/156 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R+     +    L++P    P   ++   S      +   R+      A++ L 
Sbjct: 163 NLGAIFRSAAGLGM-DAVLLSPSCADPLYRRSVRVSMGEVFAVPYARL-DPWPAALSLLV 220

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
                           L P   A+ L+E   S    + ++ G E  GLT + + ++   +
Sbjct: 221 --------KHGFMLVALTPSATAVPLDELAVSSYDRLALLLGSEGPGLTRDALGVATVRV 272

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
             P+     SLN++    +  +         +   V
Sbjct: 273 RIPMAHGVDSLNVAATAAIACYVLGRAVTGRAGSAV 308


>gi|269123340|ref|YP_003305917.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
 gi|268314666|gb|ACZ01040.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
          Length = 254

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--- 66
           +   G +IIL   Q   NIG + R +   N   L L        S K   ++        
Sbjct: 102 SELSGDLIILDAIQDPGNIGTIIRTLVAANYRTLILTKSSVDVYSPKVVRATMGGIFNVN 161

Query: 67  --VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
               +   +   LKE     + I  +TA ++ +               E          I
Sbjct: 162 IIYEEKENIIKFLKE--NGYNII--STALSKESIDY-----------REVELKKDKNAYI 206

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           FG E  G+++E + +S+     P+     SLN+S A+ + +++  E
Sbjct: 207 FGNEGGGVSDEFLEISHQKAIIPIYGKIESLNVSIALGIFLYKMRE 252


>gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 314

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 20/175 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC--VIDSVRV 73
           +L   Q   N G + R         L +      D +  +  RS++ +     +I  V +
Sbjct: 144 VLSRIQDPGNAGTILRVADAAG-ADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVEL 202

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI---------- 123
               ++  +    + A    +     ++    + A VL   +      G+          
Sbjct: 203 EEFAEDVKSQGTVVLAA---DGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAFDLSRPT 259

Query: 124 --IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +FG E  GL+ EE + +   I+ PV     SLN+  A  + ++        + 
Sbjct: 260 MWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASAMAQHQTQ 314


>gi|212716243|ref|ZP_03324371.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660755|gb|EEB21330.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM
           16992]
          Length = 221

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 25/166 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    N +
Sbjct: 73  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFE 129

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
             +  +    I A TA               A  L   I       ++FG E   + +  
Sbjct: 130 NLVESMPNSRIIAFTA--------------HATKLYTDIEYKPTDILLFGPEPGNIPDPM 175

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + +A  +    +  P+ P   SLN++    + ++E       +  +
Sbjct: 176 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQLGFAGGQ 221


>gi|139436965|ref|ZP_01771125.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
           25986]
 gi|133776612|gb|EBA40432.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
           25986]
          Length = 304

 Score = 47.7 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--------FSNL 77
           N+G + R+    N+    LV+P    P   ++   S      +   R+           L
Sbjct: 150 NVGAIFRSAAALNVDG-ILVSPTCCDPLYRRSARVSMGTVFQVPWTRIGSEARVWPHDGL 208

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              + +  F  A  A   ++  S+  P          +     + I  G E  GL  + I
Sbjct: 209 A-VLHEAGFSCAAMALTDDSV-SLDDPV---------LQEIDRLAIFMGTEGAGLGAKTI 257

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           A  +  +  P+     SLN++ A  +  W+ 
Sbjct: 258 AGCDRAVRIPMAHGVDSLNVAAASAVAFWQL 288


>gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans]
          Length = 388

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSN------AIISFPVNPLFPSLNISQAVLLMVWECM 169
            +G +  +I G E  G++ E              +  PV     SLN++ A+ L+++E  
Sbjct: 318 QTGSHSVVIIGGESHGVSTEAYQFMQTVGNRGRCLHIPVAEGIDSLNVASALTLILYELR 377

Query: 170 ENSI 173
           ++ +
Sbjct: 378 KHVL 381


>gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium 104]
 gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574
 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium 104]
          Length = 309

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L +     N+G + R++  F    + +   R    +  A  +SA A   I   R  +N
Sbjct: 163 VALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR-ATN 221

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L   + D            +    V+          + +     + ++ G E  GL+   
Sbjct: 222 LTRTLQDWA----------DRGLRVIGLDAGGDTTLDDLDGSDPLVVVVGSEGKGLSRLV 271

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               + ++S P+     SLN S A  +++ E     
Sbjct: 272 RQNCDEVVSIPMAGSAESLNASVAAGVVLAEISRQR 307


>gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2]
          Length = 271

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 25/159 (15%)

Query: 17  IILVDPQLGENIGMVARAMW---NFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVR 72
           + L + Q   N+G + R +    NF+L    L++P    P + K   SS  A   +  + 
Sbjct: 133 VYLHEVQDPGNLGTILRTLAWFDNFSL----LLSPNSVDPFNSKVVRSSMGAIFHVP-IE 187

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +  +L +A+             R +  + L     A               +FG E  G+
Sbjct: 188 LDVSL-DALQ-----------TRFSRFAYLD---MAGEAVTAPSFSDFDCYLFGNEARGV 232

Query: 133 TNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECME 170
               ++  NA   +   +    SLN++ AV + V+E   
Sbjct: 233 PKAALSAFNAKAYTIAGSGKIDSLNLASAVNMCVYELSR 271


>gi|325067170|ref|ZP_08125843.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
          Length = 310

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 13/164 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N G + RA        + LV       + K   S+A +   +  V   + L
Sbjct: 158 VLTQAQDPGNAGTIIRAADAAGADAIVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVA-L 216

Query: 78  KEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +A+  LH    T   A  R +F           +L            + G E  GL +E
Sbjct: 217 DDAVTALHNAGLTVLAADGRGDF----------DLLEAESLLEAPSAWLLGNEAHGLPSE 266

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            ++ ++A++S P+     SLN++ A  + ++         S ++
Sbjct: 267 ALSRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQAQHSGRS 310


>gi|237746707|ref|ZP_04577187.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229378058|gb|EEO28149.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 271

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 22/173 (12%)

Query: 4   YAPQLQ--NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P +Q     +   ++L   Q   N+G + R+     + ++          S +   + 
Sbjct: 103 SKPAVQTCPVLRQTAVLLDRIQDPGNLGSILRSAAAAGIARVFCSAGTASAWSPRVLRAG 162

Query: 62  ANADCVIDSVRVFSN--LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A  +++   +  N  L++ +      + ATT              +  + L       
Sbjct: 163 MGAHFLLE---IVENVVLEDVMEASEIPVIATTPYTET------TIYDCDLRL------- 206

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             V  + G E  G+    +  ++  +  P      SLN++    +  +E +  
Sbjct: 207 -PVAWLLGHEGKGIRESLLDKASDRVVVPHQGAMESLNVAACAAVCFFEQVRQ 258


>gi|229513183|ref|ZP_04402648.1| rRNA methylase [Vibrio cholerae TMA 21]
 gi|229349593|gb|EEO14548.1| rRNA methylase [Vibrio cholerae TMA 21]
          Length = 170

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           VII L +P+   N+G V RA   +N TQ+R         +    + +        +S   
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++  + DL      TA   +  K V                 +    +FG E   L 
Sbjct: 59  IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E +  ++ ++  P +     +N++  V +++++ +  S+   +   +
Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGDIDDQAQ 155


>gi|221134031|ref|ZP_03560336.1| rRNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 251

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 37/164 (22%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCV------ID 69
           + L + Q   N+G + R +  F    L L +P    P + K   +S  A         I 
Sbjct: 112 VYLHEVQDPGNLGTIIRTLAWFGDVTLLL-SPNSVDPFNAKVVRASMGALFYVPIEQDIS 170

Query: 70  SVRVFSNLKE-AIADLH--FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             ++     E A  D++   I AT+      FK++                      +FG
Sbjct: 171 LAQLNERFDEFAYLDMNGESIAATS------FKTM-------------------PCYVFG 205

Query: 127 RERWGLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLMVWECM 169
            E  G+  + +    A   +        SLN++ AV + ++E M
Sbjct: 206 NEARGVPRDALTQMPATAFTIKGAGNIESLNLASAVNMCMYELM 249


>gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 244

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADC 66
           +++  K   +IL       N G + R      +    +V  +   P +     +SA A  
Sbjct: 90  IESGKKPLFLILDQLSDARNFGAIIRTAECTGVDG-IIVQKQGSAPVNGDTVKTSAGAVF 148

Query: 67  VIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            +   +V  ++K+AI     + +  + AT     N +                I   + V
Sbjct: 149 NVPICKV-DHIKDAIFLLQASGIKTVAATEKTESNIY---------------DISLNEGV 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            II G E  G+    + + +     P+     SLN+S A    ++E +   
Sbjct: 193 AIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYETVRQR 243


>gi|224282497|ref|ZP_03645819.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|311063836|ref|YP_003970561.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310866155|gb|ADP35524.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 215

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 27/160 (16%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 67  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 123

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN- 134
           NL E++ +   I A TA               A  L   +       ++FG E   + + 
Sbjct: 124 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEPGDIPDP 168

Query: 135 -EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +A  +    +  P+ P   SLN++    + ++E    
Sbjct: 169 MDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 208


>gi|153802741|ref|ZP_01957327.1| rRNA methylase, putative [Vibrio cholerae MZO-3]
 gi|124121737|gb|EAY40480.1| rRNA methylase, putative [Vibrio cholerae MZO-3]
          Length = 178

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 21/181 (11%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           VII L +P+   N+G V RA   +N TQ+R         +    + +        +S   
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++  + DL      TA   +  K V                 +    +FG E   L 
Sbjct: 59  IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
            E +  ++ ++  P +     +N++  V +++++ +  S+   +   +       K  + 
Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQVIANRDNKKSVE 167

Query: 194 S 194
            
Sbjct: 168 G 168


>gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
 gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
          Length = 244

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 21/171 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++   K   +IL       N G + R      +  + +        +     +SA A   
Sbjct: 90  IETGKKPLFLILDQLSDARNFGAIIRTAECTGVDGIIIQKQGSAPVNGDTVKTSAGAVFN 149

Query: 68  IDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           +   +V  ++K+AI     + +  + AT          +             I   + V 
Sbjct: 150 VPICKV-DHIKDAIFYLQGSGIKTVAAT----EKTENHIYD-----------INFNEGVA 193

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           II G E  G+    + + +     P+     SLN+S A    ++E +   +
Sbjct: 194 IIMGSEDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLYEALRQRM 244


>gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314]
 gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
           efficiens YS-314]
 gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
           efficiens YS-314]
          Length = 313

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 17/175 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   Q+   G  +IL +     N+G V R++  F    + +   R    +  A  +SA  
Sbjct: 153 ADAAQSPKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGT 212

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   +  +    +KE   + + +                         +      NV
Sbjct: 213 AARVPVAKETNMTRTIKEFQKNGYQVVGL--------------DAGGDHTLDTYDGTDNV 258

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            I+ G E  G++       + I+S P  P   SLN S A  +++ E      ++ 
Sbjct: 259 VIVVGSEGKGISRLVRENCDTIMSIPTEPWVESLNASVAAGVVLSEFARQRRLAQ 313


>gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1]
          Length = 263

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              G + G E  GL++E   +++  I  P+     SLN + +  L+++EC    
Sbjct: 205 GACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258


>gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629]
          Length = 263

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              G + G E  GL++E   +++  I  P+     SLN + +  L+++EC    
Sbjct: 205 GACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLNAAISATLLMYECNRQR 258


>gi|213692908|ref|YP_002323494.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524369|gb|ACJ53116.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 169

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 21  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 77

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131
           NL E++ +   I A TA               A  L   +       ++FG E  G    
Sbjct: 78  NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 121

Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   E       +  P+ P   SLN++    + ++E    
Sbjct: 122 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 162


>gi|227548325|ref|ZP_03978374.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079643|gb|EEI17606.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 273

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 102 LAPKEAAIVLNERIFSGQ-----NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
           L P +AA  L E +          V ++ G E  GLT   +  ++     P+ P   SLN
Sbjct: 197 LTPDDAAEHLAEALVDATGRPWDKVALLVGGEGPGLTEHAMRATHVRARIPMAPGTDSLN 256

Query: 157 ISQAVLLMVWECMEN 171
           ++ +  +  +E   +
Sbjct: 257 VATSAAIAFYERQRS 271


>gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 gi|11141830|gb|AAG32066.1| rRNA methyltransferase [Streptomyces viridochromogenes]
          Length = 287

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P    NIG + R+        L +          K+  SS  +   + +VRV  +  E 
Sbjct: 133 RPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRV-PSPGEV 191

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
              + ++ A   R       ++   E            Q   ++ G E  GL+N    L 
Sbjct: 192 ---MDWVEA--RRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLC 246

Query: 141 NAIISFPV 148
           +  +S P+
Sbjct: 247 DYTVSIPM 254


>gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 247

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 11/161 (6%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G ++IL   Q   N+G   R+     +  + +        +     +SA A   ++ +++
Sbjct: 98  GFILILDSIQDPRNLGACLRSANAAGVHCVVINKNGSAPINSLVHKTSAGA---LNQLKI 154

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           F      + +L       A  + N   V+    +  +   +I       II G E  GL 
Sbjct: 155 FQ-----VTNLSRTI--KALQQKNIW-VIGLDGSVNISIYQIDLTIPNAIIMGAEGSGLR 206

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
                  + +   P+     SLN+S A  + ++E     ++
Sbjct: 207 RLTKQSCDQLAKIPMQGKVESLNVSVATGVTLFEVNRQRLL 247


>gi|29346221|ref|NP_809724.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
 gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
          Length = 252

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 27/170 (15%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           + +   + L D Q   N+G + R    F +  +          + K   ++      I  
Sbjct: 99  ARQSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IAR 155

Query: 71  VRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           V+V +++L E I  L                V         + E+  S   + I+ G E 
Sbjct: 156 VKVHYTSLPEFIHSL------------GDAPVFGTFLDGENMYEQPLSTNGL-IVMGNEG 202

Query: 130 WGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            G+  E  AL N  +  P    +P       SLN++ A  ++  E    +
Sbjct: 203 NGIGKEVEALINRKLYIP---NYPQGKETSESLNVAIATAVICAEFRRQA 249


>gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
 gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
          Length = 302

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 20/171 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC--VIDSVRV 73
           +L   Q   N G + R         L +      D +  +  RS++ +     +I  V +
Sbjct: 132 VLSRIQDPGNAGTILRVADAAG-ADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVEL 190

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI---------- 123
               ++  +    + A    +     ++    + A VL   +      G+          
Sbjct: 191 EEFAEDVKSQGTVVLAA---DGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAFDLSRPT 247

Query: 124 --IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +FG E  GL+ EE + +   I+ PV     SLN+  A  + ++      
Sbjct: 248 MWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASAMAQ 298


>gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 261

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 56/161 (34%), Gaps = 13/161 (8%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L ++     + L +     N G V R         +            KA  SSA +   
Sbjct: 105 LVDAPPSLTVALAELADPGNAGTVLRTADACGAGAVVFGAGSADPYGGKAVRSSAGSLFH 164

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIF 125
           +D VR    L E +           R R    +VLA         + +       V  +F
Sbjct: 165 VDVVRGAP-LPELL----------PRLRAAGVTVLAADGGGEAALDELGPELAGPVLWLF 213

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  G+     AL++A +  P+     SLN++ A  + ++
Sbjct: 214 GNEARGVPAALAALADARVRIPMRGRAESLNLAAAAAICLY 254


>gi|145594428|ref|YP_001158725.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145303765|gb|ABP54347.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 314

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 64/181 (35%), Gaps = 16/181 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P A  L  + +  V +L D +   N G V R         +          + K   +SA
Sbjct: 117 PLATALARAPR-LVTVLADIRDPGNAGTVLRTADAAGAQAVVFAGTAVDPYNGKVVRASA 175

Query: 63  NADCVIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            +   +D VR    L + IADL      + ATT    ++   +      A          
Sbjct: 176 GSLFHVDVVRAPDPL-QVIADLRTAGLAVLATTGYGADDLDDLADAGRLAA--------- 225

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                +FG E  GL  E  A + A +  P++    SLN++ A  + ++         S  
Sbjct: 226 -PTAWVFGSEAHGLPVELTAAAEARVRVPLHGRAESLNLAAAAAVCLYASARAQRRPSPP 284

Query: 179 N 179
           +
Sbjct: 285 H 285


>gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 245

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 32/176 (18%)

Query: 9   QNSAKGPVIIL------VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           Q S+  P+ +L      V      N G + R      +T + +        +     +SA
Sbjct: 91  QKSSTTPLFVLLDGITDVR-----NFGAIIRTAECCGVTGIIIQEKGSAPINADTVKTSA 145

Query: 63  NADCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            A   I   +V +++K+A+      D+  I AT               E    +   I  
Sbjct: 146 GAVFNIPICKV-NHIKDAVFHLQTYDIKLIAAT---------------EKTDDVIFDIDL 189

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            Q + II G E  G++N  +   +     P+     SLN+S A    ++E +   I
Sbjct: 190 KQPIAIIMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLYEAVRQRI 245


>gi|222086611|ref|YP_002545145.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221724059|gb|ACM27215.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 153

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 27/169 (15%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I L  P +  N G + R      L  + ++ P     S++    +      + +V
Sbjct: 1   MTSLRIALYQPDIPGNTGTILRLAACLGLG-VDIIEPAGFDISDRNLKRA--GMDYLSAV 57

Query: 72  --------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                     F   + A      + A+T                A          ++  +
Sbjct: 58  ALARHVNWERFETWRAA-TGRRLVLAST---------------KAAERYTDFAFREDDIL 101

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +FGRE  G+ +     ++  I  P+     S+N++ +V ++  E +  +
Sbjct: 102 LFGRESAGVPDHVHETADGRILIPMLEGQRSINLAMSVAMISGEALRQT 150


>gi|17555908|ref|NP_499333.1| hypothetical protein Y45F3A.9 [Caenorhabditis elegans]
 gi|3881022|emb|CAA21494.1| C. elegans protein Y45F3A.9, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 294

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 27/186 (14%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLV---NPRDGWPSEK 56
           M   A Q  N     V I VD  L   N+G + R+ W F    L LV    P+   P   
Sbjct: 117 MDASALQFSNFEPKTVSIFVDKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITP--A 174

Query: 57  ARSSSANADCVIDSVRV-----FSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAI 109
              SS  A   ++ + V     F+  ++ I  A    + AT        K+ ++ K    
Sbjct: 175 MIKSSCGA---LEHLPVQQFLNFNEFRDKIKAAGGELV-ATCD-PGAAEKAGISAKSLDQ 229

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF-PVNPL---FPSLNISQAVLLMV 165
              E+      VGI+ G E  G++   + L + +IS  PV        SLN+S    +++
Sbjct: 230 WTPEK-----PVGIVLGDEGVGISRGILNLCDTVISISPVRKDGSNVTSLNVSVVAGILL 284

Query: 166 WECMEN 171
                 
Sbjct: 285 HHISLQ 290


>gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
           5427]
 gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
           5427]
          Length = 263

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----NADCVIDSVRV 73
           +L + Q   N+G + R    F+   + +        S K   S+     +   VI+    
Sbjct: 115 VLENLQDPGNLGTIIRTAHAFDFKGVFITKGSVDLYSPKVVRSTMSSLFHVPIVIE--EE 172

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                + +        TTA             E            + V II G E  G++
Sbjct: 173 IDTYMDFLKQKGVTLYTTALIPGAKPIYDVTFE------------EKVAIIIGNEGNGVS 220

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 S+  +  P+     SLN + A  + ++E    
Sbjct: 221 ERVKEASDHTVIIPMPGAAESLNAAIATSICMYEITRQ 258


>gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601]
          Length = 252

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 16/160 (10%)

Query: 14  GPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           G   +LVD  Q   N+G + R         + L        + K   S+  +   I    
Sbjct: 106 GKRFLLVDAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSAQGSHFHIP--V 163

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERW 130
           + +NL E I  L                V+     E A  L E I   + + ++ G E  
Sbjct: 164 IQANLLEWIGGL----------EEEGVPVIGALLDEHATKL-EDIGPKETLALVVGNEGA 212

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G++   +   +  +  P+     SLN++ A  ++++   +
Sbjct: 213 GISAPIVERLSERVYIPIYGKSESLNVAVAAGILMYGIRK 252


>gi|149187616|ref|ZP_01865913.1| rRNA methylase, putative [Vibrio shilonii AK1]
 gi|148838496|gb|EDL55436.1| rRNA methylase, putative [Vibrio shilonii AK1]
          Length = 173

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 11  SAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           + +  VII L +P+   N+G V RA   +N TQ+R     +G    +A     +     +
Sbjct: 2   TTESTVIIGLHNPKSPTNVGAVMRAAGCYNATQVR----YNGTRYSRAVRFQTDTQNTHE 57

Query: 70  SVRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            + +    +L   +AD   +                                N   +FG 
Sbjct: 58  RIELVEMNDLTADVADNVSVVC-------------VEFAVGATSLPSFNHPDNAVYVFGP 104

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           E   L  E +  ++ ++  P +     +N++  V +++++ +  S+   + + +
Sbjct: 105 EDGSLPQELVDKADHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGPIDDHQQ 155


>gi|313139649|ref|ZP_07801842.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132159|gb|EFR49776.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 216

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 27/160 (16%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 68  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 124

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN- 134
           NL E++ +   I A TA               A  L   +       ++FG E   + + 
Sbjct: 125 NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEPGDIPDP 169

Query: 135 -EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +A  +    +  P+ P   SLN++    + ++E    
Sbjct: 170 MDIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 209


>gi|283853731|ref|ZP_06370959.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           FW1012B]
 gi|283570881|gb|EFC18913.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           FW1012B]
          Length = 274

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 20/165 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
              +N+     + L   Q   N+G +AR ++      + L  PR         A  +SA 
Sbjct: 113 EATRNAPLPVALALDRVQDPGNVGALARTLYALGGGGIIL--PRHEGARLGPGAAKASAG 170

Query: 64  ADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
               +   +V +    L+EA      +                  E              
Sbjct: 171 TLSRLPVAKVANLSRALEEAAEAGFAVVGAAG-------------EDGAENALAARPEFP 217

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + ++ G E  G+          +   P      SLN++QA  +++
Sbjct: 218 LVLVLGNEDEGIRLGVRKRCQTLYRIPQARPLDSLNVAQAGAILL 262


>gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542]
 gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542]
          Length = 339

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 22/177 (12%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSA 62
           A +L+  A   ++ L       N+G V R+   F      LV P  R    +  A   SA
Sbjct: 180 AAELEQPA--LIVALDGVTDPRNLGAVLRSAGAFGAHG-VLV-PERRSAGVTASAWKVSA 235

Query: 63  NADCVIDS---VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +       +   L E  +   FI                     + + +  FS  
Sbjct: 236 GAAARVPVARATNLTRTLLEYKSAGCFIVGLDGGGE-------------VSVGDLAFSVD 282

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  GL+       +AI S P+     SLN   A  + ++E  +     +
Sbjct: 283 PIVLVVGSEGKGLSRLVRETCDAIASIPIASAVESLNAGVAAGIALYEVAKVRAAEA 339


>gi|148560365|ref|YP_001259457.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148371622|gb|ABQ61601.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
          Length = 226

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 65  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 123

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 124 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 168

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 169 -EATICERQALLLGTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL 219


>gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 259

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSNLKEAIA 82
             N+G + R    FN+T +                 + +A   ++ V      NL EA+ 
Sbjct: 123 PHNVGAIVRTAAAFNVTAIV---TTARHSPAATGVLAKSASGGLEHVPFVTVRNLAEALI 179

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL          R   +  L  +    +  +++     + I+ G E  GL        + 
Sbjct: 180 DLG--------ERGFTRIGLDSEAPVPL--DQVTPAPPLVIVLGAEGKGLRQRTRECCDV 229

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
           +          SLN+S A  + ++  
Sbjct: 230 MARLDFPGAIKSLNVSNAAAITLYAL 255


>gi|125562106|gb|EAZ07554.1| hypothetical protein OsI_29808 [Oryza sativa Indica Group]
          Length = 298

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 123 IIFGRERWGLTNEEIALSNA------IISFPVNPLF-PSLNISQAVLLMVWECMENSIVS 175
           ++FG E  GL    +   +        I  P+   +   LN+S +V + ++E        
Sbjct: 216 LVFGSETKGLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLNYE 275

Query: 176 SEKNVKEQNTPA 187
                 E    A
Sbjct: 276 QLHYQPELPEEA 287


>gi|312601582|gb|ADQ90837.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 233

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L       ++IL   Q   N+G + R    F +  + L   R    +E     S+    
Sbjct: 73  TLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFV 132

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  + + +++  AI  L            +F       +      + I       II G
Sbjct: 133 GLKFI-LVNSIVSAINKL---------KEMDFWIYATDLKEKSRKIQEIQFNYPCAIILG 182

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  G+    +  S+     P+     SLN++ A  ++++   +N
Sbjct: 183 NEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQN 227


>gi|72080967|ref|YP_288025.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|71914091|gb|AAZ54002.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 233

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L       ++IL   Q   N+G + R    F +  + L   R    +E     S+    
Sbjct: 73  TLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFV 132

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  + + +++  AI  L            +F       +      + I       II G
Sbjct: 133 GLKFI-LVNSIVSAINKL---------KEMDFWIYATDLKEKSRKIQEIQFNYPCAIILG 182

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  G+    +  S+     P+     SLN++ A  ++++   +N
Sbjct: 183 NEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQN 227


>gi|121585625|ref|ZP_01675421.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80]
 gi|121725811|ref|ZP_01679111.1| rRNA methylase, putative [Vibrio cholerae V52]
 gi|147671714|ref|YP_001215406.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|153211863|ref|ZP_01947710.1| rRNA methylase, putative [Vibrio cholerae 1587]
 gi|153824394|ref|ZP_01977061.1| rRNA methylase, putative [Vibrio cholerae MZO-2]
 gi|153830522|ref|ZP_01983189.1| putative rRNA methylase [Vibrio cholerae 623-39]
 gi|229528543|ref|ZP_04417934.1| rRNA methylase [Vibrio cholerae 12129(1)]
 gi|254285652|ref|ZP_04960615.1| rRNA methylase, putative [Vibrio cholerae AM-19226]
 gi|262168476|ref|ZP_06036172.1| rRNA methylase [Vibrio cholerae RC27]
 gi|121550242|gb|EAX60256.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80]
 gi|121631576|gb|EAX63944.1| rRNA methylase, putative [Vibrio cholerae V52]
 gi|124116939|gb|EAY35759.1| rRNA methylase, putative [Vibrio cholerae 1587]
 gi|146314097|gb|ABQ18637.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|148873981|gb|EDL72116.1| putative rRNA methylase [Vibrio cholerae 623-39]
 gi|149741948|gb|EDM55977.1| rRNA methylase, putative [Vibrio cholerae MZO-2]
 gi|150424149|gb|EDN16087.1| rRNA methylase, putative [Vibrio cholerae AM-19226]
 gi|227015313|gb|ACP11522.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|229334905|gb|EEO00391.1| rRNA methylase [Vibrio cholerae 12129(1)]
 gi|262023005|gb|EEY41710.1| rRNA methylase [Vibrio cholerae RC27]
 gi|327485645|gb|AEA80051.1| RRNA methylase, putative [Vibrio cholerae LMA3894-4]
          Length = 170

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           VII L +P+   N+G V RA   +N TQ+R         +    + +        +S   
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++  + DL      TA   +  K V                 +    +FG E   L 
Sbjct: 59  IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E +  ++ ++  P +     +N++  V +++++ +  S+   +   +
Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155


>gi|325192103|emb|CCA26564.1| SpoU rRNA Methylase family putative [Albugo laibachii Nc14]
          Length = 1716

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 24/156 (15%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAIA-- 82
            N+  +AR    F   +L + N           S S++A   I   ++    +L +AI   
Sbjct: 1569 NLAGLARTCEIFGAEKLVVSNLNTIKNDATFVSMSSSAHKWIKMEQISRGESLIDAIHHW 1628

Query: 83   ---DLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + + I     T+R++   K    P                  II G E  G+  E +
Sbjct: 1629 KEVEKYHIIGLEQTSRSQCCSK-YRFPD--------------KAVIILGSEGAGIPVEIL 1673

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             L +  +  P   L  SLN+  +  +++WE     +
Sbjct: 1674 RLVDVCVEIPQFGLVRSLNVHVSGAILLWEYTRQRL 1709


>gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
 gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
          Length = 265

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L          +     V        V    +    +  +I G E  G+  E +   + 
Sbjct: 183 KL----------KEKNVPVYGTALENGVSYGEVTPTGSFALIVGNEGNGVRQEILTKCDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905]
 gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905]
          Length = 254

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R      L  + L        + K   ++  +   I  VR    L E + 
Sbjct: 118 QDPGNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAAQGSHFHIPVVR--EELTECVD 175

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      ++ T               E A+  ++   +G    II G E  G+  + +A
Sbjct: 176 FLQAQGVPVFGTAL------------DEDAVPYSDIQHTGA-FAIIMGNEGSGIQPQLLA 222

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +++  I  P+     SLN++ A  ++++
Sbjct: 223 MTDQNIIIPIFGQAESLNVAVATGIVLY 250


>gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
 gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
          Length = 1056

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 23/148 (15%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAI- 81
              N+G + R +    L  + +        +      S  A   ++  +VF  +NL + I 
Sbjct: 918  PHNLGAILRTVEACALDGVIMSKKHQVPLNSTVAKISCGA---LEYTKVFLVTNLHQTIL 974

Query: 82   ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                +   I  T + +  +F               +I    ++ II G E  G+ +    
Sbjct: 975  KLKKNQVLIVGTDSNSSQSFH--------------QIPKNSSLAIIVGNEGIGIRHLLKQ 1020

Query: 139  LSNAIISFPVNPLFPSLNISQAVLLMVW 166
              + ++  P+     SLN+S A  LM++
Sbjct: 1021 QCDLLVKIPMYGKINSLNVSVAAALMIY 1048


>gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
 gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
          Length = 234

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 15/156 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70
           +G V++L       N+G + R+   F++    +V      P      +  ++ A  V+  
Sbjct: 82  EGIVLVLDQITDPHNVGAIMRSAAAFSVK--AIVTTARHSPEATGVLAKSASGALEVVPL 139

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+V  NL  A+  L+        +R      L            +   Q + ++ G E  
Sbjct: 140 VQV-QNLARALTGLN--------DRGYMTVGLD--STGGENLAAVQLRQPLALVLGAEGK 188

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL        + +    +     SLN+S A +L ++
Sbjct: 189 GLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALY 224


>gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
 gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
          Length = 244

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 13/157 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVF 74
           ++IL   +  +N G + R    FN+  L + + R     +     +S+ A   ++ + + 
Sbjct: 96  ILILDGIEDPQNFGAILRTSEQFNI-DLVITSQRRSAKDNATTLRTSSGASQYVNKL-IV 153

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            N+   I DL          +N F  + A       +N    +   + +I G E  G+  
Sbjct: 154 PNINNVIKDL---------KKNGFW-IYASDIKGKAINTIKINDTKIALIMGNEGKGIHK 203

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                S+ ++  P      SLN+S +  ++++E    
Sbjct: 204 LIKENSDFLVKIPTTGKIDSLNVSVSTGILIFEIKRQ 240


>gi|50557128|ref|XP_505972.1| YALI0F27995p [Yarrowia lipolytica]
 gi|49651842|emb|CAG78784.1| YALI0F27995p [Yarrowia lipolytica]
          Length = 608

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 29/188 (15%)

Query: 1   MTPYAPQLQ--------NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG 51
           M+P  P  Q           + P+++ L       N+G + R+        + +      
Sbjct: 419 MSPITPTFQVTSSVESHRPRRFPLVVYLDQLNDTHNLGSILRSCQFLGADAVIVTAKNCA 478

Query: 52  WPSEKARSSSANADC---VIDSVRVFSNLKEAIAD------LHFIYATTARNRNNFKSVL 102
             S     +S+ A     V ++ +  ++  +   +         +   +   ++     L
Sbjct: 479 PLSPAVAKTSSGALEYMPVFENSKTPAHFFQKCKNNGWNIVCAAVPTASGAAKSKADKPL 538

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPV------NPLFPSLN 156
           + ++    L       +   ++ G E  G+    +  ++  +  P       N    SLN
Sbjct: 539 SLRQCGSWL-----DNKPTVLVLGGEHGGVRQTILNQADHHVIVPASNSWIKNNTVDSLN 593

Query: 157 ISQAVLLM 164
           +  A  ++
Sbjct: 594 VGVAAGIL 601


>gi|319793968|ref|YP_004155608.1| tRNA/rRNA methyltransferase (spou) [Variovorax paradoxus EPS]
 gi|315596431|gb|ADU37497.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus EPS]
          Length = 261

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 23/167 (13%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P+L   A  P ++L   Q   N G + R+   F  TQ+  +       + K   +  
Sbjct: 106 PVRPELIPDA--PSVVLDRLQDAGNAGSILRSAAAFGFTQVIALKGTAALWAPKVLRAGM 163

Query: 63  NADCVIDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A   +  +       +A+  L   + AT++           P                 
Sbjct: 164 GAHFGLRLIEGVE--ADALDALKIPLVATSSHRGEWLHQARLP--------------HPC 207

Query: 122 GIIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
             + G E  G++    A +   I    P      SLN++ A  + + 
Sbjct: 208 AWLMGHEGQGVSAALEARATHHIRIAQPGGEE--SLNVAAAAAICLH 252


>gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
 gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
          Length = 265

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +    V  NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G++ E +A S+ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGSGVSQEILAKSDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|193216697|ref|YP_001999939.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
 gi|193002020|gb|ACF07235.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
          Length = 173

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 73/175 (41%), Gaps = 19/175 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
           +IL  P++  N   + R  +  N  +L ++ P   D  P    R ++ +    I+   + 
Sbjct: 4   VILYQPEISPNTANIIRTCFATN-AKLHIIKPTAFDLHPHWLKRKAAGHFLSEIEH-EIH 61

Query: 75  SNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +N ++      D +  Y T    R    +      + I     + + + + ++FG E  G
Sbjct: 62  ANYEQFFKKYGDKNIYYIT----RYGLSNY-----SQIDWKNELDNNKEIWVMFGTESTG 112

Query: 132 LTNEEIA--LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
           +  + +   ++N  +  P+     SLN++ +V ++++E M  +   +    + Q 
Sbjct: 113 IPKKIMQTKIAN-CLRIPMFAQCRSLNLANSVAIVLYEIMRQNSFPNLSEFESQK 166


>gi|262190204|ref|ZP_06048480.1| rRNA methylase [Vibrio cholerae CT 5369-93]
 gi|262033901|gb|EEY52365.1| rRNA methylase [Vibrio cholerae CT 5369-93]
          Length = 170

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           VII L +P+   N+G V RA   +N TQ+R         +    + +        +S   
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++  + DL      TA   +  K V                 +    +FG E   L 
Sbjct: 59  IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E +  ++ ++  P +     +N+S  V +++++ +  S+   +   +
Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLSATVNVVLYDRLAKSLGEIDDQAQ 155


>gi|149197508|ref|ZP_01874559.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155]
 gi|149139526|gb|EDM27928.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155]
          Length = 162

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E AI + +     Q    + G E+ GL  + +   + I+  P    + SLN++ A  +++
Sbjct: 91  EDAIDIADYEHPDQ-ACYLLGNEQAGLAPKVLKRCHGIVKLPG---YFSLNVAVAGSILM 146

Query: 166 W 166
           +
Sbjct: 147 Y 147


>gi|325285564|ref|YP_004261354.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324321018|gb|ADY28483.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 241

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 17/149 (11%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    F +  L          + K   ++  +   ++   V+ +L+  +   
Sbjct: 108 PGNLGTIIRLCDWFGVANLFCSKQTVDCYNPKTIQATMGSLARVN--IVYGDLEAFLKQT 165

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
           +               V         + +  F+ Q+  ++ G E  G++     L    I
Sbjct: 166 NL-------------PVYGAFMDGKNVYKEDFTAQSGVLVMGNEANGVSKTVEELITKKI 212

Query: 145 SFP--VNPLFPSLNISQAVLLMVWECMEN 171
           S P   N    SLN++ A  +++ E    
Sbjct: 213 SIPQFGNKTTESLNVATATAILLNEIRRG 241


>gi|32475172|ref|NP_868166.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
 gi|32445713|emb|CAD78444.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
          Length = 281

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G +++L   +   N+G V R+     ++ + L +      +  A   S  A   + S   
Sbjct: 132 GLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASG 191

Query: 74  FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +  EA +    +  A  A      + +                   V ++ G E  GL
Sbjct: 192 SESQMEAFLKTHGYRVA--AMRVEGSRPLFDSDLRG-----------KVAVVLGSEADGL 238

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +     S   ++ P+     SLN+S +  ++ +E +   
Sbjct: 239 ADRWAGDSIDPVALPMAGHVDSLNVSVSAAIVAFEAVRQR 278


>gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 253

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 18/158 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL   +   N+G + R      +  + +   R    +      S  A   +   RV    
Sbjct: 108 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVTRVTNLV 167

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + E      +++ T               + A        +     +I G E  G++ 
Sbjct: 168 NTVSELKDRGLWVFGT---------------DMAGEDYRHWDATGATALIIGNEGKGISP 212

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 +++++ P+     SLN S A  L++++   + 
Sbjct: 213 LLKKKVDSMLTIPMIGHVQSLNASVAASLLIYQGFSSR 250


>gi|317052474|ref|YP_004113590.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316947558|gb|ADU67034.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 248

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 27/155 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  EN+G V R+   F +  + L+         KA  +SA                 A+ 
Sbjct: 115 QDPENVGSVLRSSVAFGVRDILLLEQCASPFLPKAIRASAG----------------AVF 158

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-----IIFGRERWGLTNEEI 137
              F      R  + F  +  P +   +  E     + V      ++ G E  G+     
Sbjct: 159 HCRFFAG--PRLEDIF-HLPYPGQIVSLSAEGKPLAETVFSDPTMLVPGIEGAGIPARWR 215

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             S   +S P++    SLN + A  ++++   +  
Sbjct: 216 EQS---VSIPMDAGVESLNAAVATSIVLYHMAQRR 247


>gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
           fermentans DSM 20731]
 gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
           fermentans DSM 20731]
          Length = 250

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + ++ G E  GL        + I+  P+     SLN S A  +++++ +   I+ + K
Sbjct: 189 GPMVLVVGAEGKGLGRLVKENCDFIVRIPMLGQVSSLNASVAGGILLYDIVRQRILEARK 248


>gi|229522766|ref|ZP_04412181.1| rRNA methylase [Vibrio cholerae TM 11079-80]
 gi|229340213|gb|EEO05220.1| rRNA methylase [Vibrio cholerae TM 11079-80]
          Length = 170

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 23/169 (13%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           VII L +P+   N+G V RA   +N TQ+R     +G    +A     +     + + + 
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVR----YNGTRYARAVKFQTDTQNSHERIGLV 62

Query: 75  --SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              +L             TA   +  K V                 +    +FG E   L
Sbjct: 63  QMDDL-------------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSL 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             E +  ++ ++  P +     +N++  V +++++ +  S+   +   +
Sbjct: 110 PQEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155


>gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 327

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 7   QLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSAN 63
             + S + P+I+ L       N+G + R+   F      LV P  R    +  A   SA 
Sbjct: 169 AAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHG-VLV-PERRSAGVTASAWKVSAG 226

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A   +   R  +NL  A+ +L            +   ++          E   +   + +
Sbjct: 227 AAAHVPVAR-ATNLARALGELKKAGCFVVGLDGDGDQLV---------GELSLATDPLVV 276

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMENS 172
           + G E  G+        + I S P++     SLN   A  + ++E  ++ 
Sbjct: 277 VVGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALYEIAQSR 326


>gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas]
 gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 252

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 21/158 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSV---RVFSNLKEA 80
            N+G + R+   FN+  + L  P    PSE      +S+ A  +I  V    + + +K  
Sbjct: 111 HNVGSIIRSAVCFNVDAIIL--PYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLL 168

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
               ++ Y   A+                    +        IIFG E  G+        
Sbjct: 169 KKAGYWCYGFDAKEGEFLH--------------KTKLDSKKLIIFGSEDKGMRKLTKENC 214

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + ++   ++    SLN+S A  + ++     +   + +
Sbjct: 215 DFLLKIAISKKIDSLNVSNAAAVALYSIFIQNYDQALQ 252


>gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 218

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 21/158 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSV---RVFSNLKEA 80
            N+G + R+   FN+  + L  P    PSE      +S+ A  +I  V    + + +K  
Sbjct: 77  HNVGSIIRSAVCFNVDAIIL--PYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLL 134

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
               ++ Y   A+                    +        IIFG E  G+        
Sbjct: 135 KKAGYWCYGFDAKEGEFLH--------------KTKLDSKKLIIFGSEDKGMRKLTKENC 180

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + ++   ++    SLN+S A  + ++     +   + +
Sbjct: 181 DFLLKIAISKKIDSLNVSNAAAVALYSIFIQNYDQALQ 218


>gi|330007674|ref|ZP_08306014.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
 gi|328535397|gb|EGF61878.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
          Length = 131

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 18/142 (12%)

Query: 33  RAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAIADLHFIYA 89
           R+  +F +    +V       S  A  ++   A+ V  I        L       + I +
Sbjct: 2   RSCAHFGVKG-VVVQDAGVLESGAAIRTAEGGAEHVEPITGDSFIDTLDRFRKAGYAIVS 60

Query: 90  TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149
           T++ N         PK               + +  G+ER GL++  I+ ++  ++    
Sbjct: 61  TSSHNGTPLFKAELPK--------------KMVLALGQERDGLSDAAISSADLSVAIDGT 106

Query: 150 PLFPSLNISQAVLLMVWECMEN 171
               SLN+S A  +++ E    
Sbjct: 107 GNVESLNVSVATGVLLAEWWRQ 128


>gi|260770421|ref|ZP_05879354.1| rRNA methylase [Vibrio furnissii CIP 102972]
 gi|260615759|gb|EEX40945.1| rRNA methylase [Vibrio furnissii CIP 102972]
 gi|315181492|gb|ADT88405.1| 23S rRNA methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 172

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 70/175 (40%), Gaps = 35/175 (20%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLR--------LVNPRDGWPSEKARSSSANADC 66
           VII L +P+   N+G V RA   +N TQ+R         V  +    + KAR +    + 
Sbjct: 7   VIIGLSNPKSPTNVGAVMRAAGCYNATQVRYNGTRYNRAVKFQTDTHNSKARIALVEMED 66

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +  +  +  +++  I  +  +   TA                     +    QN   +FG
Sbjct: 67  L--TADLAPDVE--IVCVELVVGATA-------------------LPQFVHPQNAIYLFG 103

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E   L  + +  ++ ++  P N     +N++  V +++++ +  ++ + +   +
Sbjct: 104 PEDGSLPQDVVDQAHHVVYVPTNGC---MNLAATVNVVMYDRLAKTLGTIDDQAQ 155


>gi|150006258|ref|YP_001301002.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
 gi|149934682|gb|ABR41380.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
          Length = 268

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 22/172 (12%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++    +  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S  +  ++    +   + + +    F     A T  + +    +L              +
Sbjct: 167 SMGSVFLVPWTWLNGTIGD-LNKFGFRTAAMALTDDSISIDHPIL-------------AA 212

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              + I+ G E  GL  + IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 213 EPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264


>gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
           27560]
 gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
           27560]
          Length = 270

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + S + + II G E  GL    I  S+  I  P++    SLN++ A  +  WE  +
Sbjct: 215 VKSEEKLAIILGTEGEGLHQNTINSSDYTIKIPMSHGVDSLNVAAASAVAFWELGK 270


>gi|327540299|gb|EGF26885.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopirellula baltica WH47]
          Length = 275

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           G +++L   +   N+G V R+     ++ + L +      +  A   S  A   + S   
Sbjct: 126 GLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASG 185

Query: 74  FSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +  EA +    +  A  A      + +                   V ++ G E  GL
Sbjct: 186 SESQMEAFLKTHGYRVA--AMRVEGSRPLFDSDLRG-----------KVAVVLGSEADGL 232

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +     S   ++ P+     SLN+S +  ++ +E +   
Sbjct: 233 ADRWAGDSIDPVALPMAGHVDSLNVSVSAAIVAFEAVRQR 272


>gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina
           MBIC11017]
          Length = 309

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 19/156 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R         + +   R    +      +  A   +   RV  NL + +  L
Sbjct: 164 PHNLGAMIRTAEALGAQGVIIPQRRAAGITSVVAKVATGALETLAIARVV-NLNQGLEQL 222

Query: 85  H----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                +IY  +               +A      +   +   ++ G E  GL+       
Sbjct: 223 KKAGFWIYGLST--------------SAPQSIHTVTFTEPTVLVIGAEGPGLSVSTQHHC 268

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           + ++S P+     SLN S A  + ++E      V +
Sbjct: 269 DQMVSIPLQGKTASLNASVATGMALYEVYRQRWVET 304


>gi|332993001|gb|AEF03056.1| putative cold-shock RNA methyltransferase [Alteromonas sp. SN2]
          Length = 136

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 16/93 (17%)

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +LKE + +   + A            +   E A+ L E     +N   IFG E   L 
Sbjct: 30  VDDLKEVVPENASVVA------------IELVEGALPLPE-FKHPENAMYIFGPEDGSLD 76

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              +   + ++  P    +  +N++    ++++
Sbjct: 77  KSVLEWCDHVVYIPT---YSCMNLAATANVVLY 106


>gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           helveticus H10]
          Length = 250

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++I+ T               + A        +     ++ G E  G+       
Sbjct: 169 LKKRGYWIFGT---------------DMAGTDYREWNAKGKTVLVIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I+ P+     SLN S A  +++++   + 
Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAYNSR 246


>gi|120598379|ref|YP_962953.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1]
 gi|120558472|gb|ABM24399.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1]
          Length = 262

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 19/151 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G + RA   + +           + + +    +A +  V    +   + K
Sbjct: 49  LVNPKTPVNVGGIMRASGCYGVN--------GVFYTGRRYELAARSGAV----QYHVDTK 96

Query: 79  EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A   +     T+   A   +     +     A  L + +        +FG E   +  E
Sbjct: 97  DAGERIPLTGVTSLLAAIPADTQLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I  ++A++  P       +N++ +V ++++
Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY 183


>gi|183221427|ref|YP_001839423.1| putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911515|ref|YP_001963070.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776191|gb|ABZ94492.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779849|gb|ABZ98147.1| Putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 285

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +I G E+ G++ +  ++ + I+  P+  +  SLN+S A  +++WE   N 
Sbjct: 235 LILGNEKKGMSVQLQSICDRIVKIPMLGVVNSLNVSCAGSILLWEVTRNR 284


>gi|309387057|gb|ADO67778.1| TpaI [Nocardiopsis sp. TFS65-07]
          Length = 269

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
            +  G +I+L   ++  NIG + R         + L++      +++    ++       
Sbjct: 112 ENRPGDIIVLDGVKIVGNIGAIVRTSLGLGAAGIVLIDSDLTSIADRRLLRASRG----- 166

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                 +L   + D     A+  R+     +VL        L E     + + ++FG E+
Sbjct: 167 ---YVFSLPIVLTD-RESAASFIRDSGVELAVLD-SHGETPLKEIGNIDRKMTLLFGSEK 221

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            G +     L++  +S P+     SLN+S +V + + +
Sbjct: 222 GGPSERLRELASTTVSIPMISSTESLNVSVSVGVTLHQ 259


>gi|239832429|ref|ZP_04680758.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239824696|gb|EEQ96264.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 154

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 31/167 (18%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-- 71
            + L  P +  N G + R  A   F +    L+ P     S+++   +      ++    
Sbjct: 4   RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDVSDRSLKRA--GMDYLEQAAL 58

Query: 72  ------RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                 R F +                R       +L+ + A    + +        ++F
Sbjct: 59  TRHADWRHFEDW--------------RRQAGRRIVLLSTRAAVPYTDYQFQENDI--LLF 102

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GRE  G+ +     ++A +  P+ P   SLN++ +V +   E +   
Sbjct: 103 GRESSGVPDTVHDAADARLLIPMMPGARSLNLAISVAMTAGEALRQR 149


>gi|182439778|ref|YP_001827497.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780442|ref|ZP_08239707.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468294|dbj|BAG22814.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660775|gb|EGE45621.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 272

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R+     +A+  + 
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARL-EAWPKALEGV- 188

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  R        L P   A  ++E      + V ++ G E  GL+ + +  ++A +
Sbjct: 189 -------REAGFRLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTQALMAADAWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P+     SLN+  
Sbjct: 242 RIPMAHGVDSLNVGA 256


>gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
          Length = 253

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 24/154 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R       + + L        + K   +   +   I    +  NL     
Sbjct: 118 QDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIK--VINDNL----- 170

Query: 83  DLHFIYATTARNRNNFKSVLAPK---EAAIVLNERIFSGQNV--GIIFGRERWGLTNEEI 137
                   +   R+ FK +  P    E      E    GQ+    ++ G E  G++ E +
Sbjct: 171 --------SGWIRH-FKDMKVPVFGSELNEHAREYTNGGQHTDFALVMGNEGNGMSKEIL 221

Query: 138 ALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170
            +++  +  P  N    SLN++ A  ++++   +
Sbjct: 222 EMTSINLYIPITNAE--SLNVAVAAGILMFALKK 253


>gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1]
          Length = 281

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 64/162 (39%), Gaps = 17/162 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------- 68
           +++L +     N+G + R+     +  + L          +A   S      I       
Sbjct: 130 IVVLENVMNPTNVGAIFRSAAALGMDAVLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDG 189

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             V+   N +E + ++ F  A  A + ++    ++  E A+   E++       +I G E
Sbjct: 190 KKVKWPENGQELLREMGFKTAAMALSDDS----VSIDEPALRREEKL------AVIMGTE 239

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             GL  + I  S+ ++  P++    SLN++ A  +  W+   
Sbjct: 240 GEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAFWQLGR 281


>gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
           TrichCH4B]
 gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
           TrichCH4B]
          Length = 262

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 25/164 (15%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P +IL+       N+G + R+      +   ++  R    + +  + +  A   ++ 
Sbjct: 110 AEIPRVILLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 166

Query: 71  -----VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
                +R  S+   A+  + ++              L     A    E   +G   + + 
Sbjct: 167 QPYLRMRNLSDTIVALQQMGYLV-------------LGLDGEAEETIEEAVAGRTKEPIA 213

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +     + ++       F SLN+S A  L ++
Sbjct: 214 LVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLY 257


>gi|237748844|ref|ZP_04579324.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229380206|gb|EEO30297.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 260

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 22/159 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFS 75
           ++L   Q   N+G + R+     + Q    +P      S +   +   A  +++   VF 
Sbjct: 118 VLLDRIQDPGNLGSILRSAAAAGIRQ-VFCSPGTAAVWSPRVLRAGMGAHFLLE---VFE 173

Query: 76  --NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +L++ I      + ATT   +         +               V  + G E  G+
Sbjct: 174 DVSLEKLIETAKIPVIATTPYTKKTIYDFDLNR--------------PVAWLLGHEGRGV 219

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               + +++  +  P      SLN++    +  +E +  
Sbjct: 220 DERLMVMASDKLVIPHMGAMESLNVAACAAVCFFEQVRQ 258


>gi|21232594|ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|188990408|ref|YP_001902418.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21114393|gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|167732168|emb|CAP50360.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 300

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 23/158 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVI-----DSVRVFSNLK 78
             N G + R+  +F +  L L      G     AR +   A+ V      D+ +  + L+
Sbjct: 160 PHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDNAQAMAQLR 219

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A     F  A T  +             A  L +R+        + G E  G+  +  +
Sbjct: 220 QA----GFAVAATLVDGGQ-------DVFATALPQRL------VYVMGAESEGMDRQFAS 262

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  +S   + L  SLN++ A  +        ++  +
Sbjct: 263 ACDLQLSIHGSGLVESLNVASATAVFQAAWRARALTGA 300


>gi|229525984|ref|ZP_04415388.1| rRNA methylase [Vibrio cholerae bv. albensis VL426]
 gi|229336142|gb|EEO01160.1| rRNA methylase [Vibrio cholerae bv. albensis VL426]
          Length = 170

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-CVIDSVRV 73
           VII L +P+   N+G V RA   +N TQ+R         +    + +        +S   
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAAGCYNATQVRY--------NGTRYARAVKFQTDTQNSHER 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++  + DL      TA   +  K V                 +    +FG E   L 
Sbjct: 59  IGLVE--MDDL------TAGLDSEVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            E +  ++ ++  P +     +N++  V +++++ +  S+   +   +
Sbjct: 111 QEVVDQAHHVVYVPTHGC---MNLAATVNVVLYDRLAKSLGEIDDQAQ 155


>gi|93005359|ref|YP_579796.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393037|gb|ABE74312.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 264

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL D Q   N+G + R      +  +   +      S K   +   A   ++   ++ 
Sbjct: 120 CLILNDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALN---IYE 176

Query: 76  --NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +++E +  +   ++AT++                  +  +    + +  I G E  G+
Sbjct: 177 GLSVQEVLDHVQTPLFATSS--------------HTDTVIYQHDLKKPIAWIMGHEGQGV 222

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            N E+      I+ P      SLN++ A  L ++E +   
Sbjct: 223 CN-ELMQCATPIALPQPNGQESLNVAIAGSLCLYETLRQR 261


>gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus]
 gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus]
 gi|296477019|gb|DAA19134.1| mitochondrial rRNA methyltransferase 1 homolog [Bos taurus]
          Length = 360

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 67/195 (34%), Gaps = 27/195 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N+G V R+     + +  + + R+  P +     +SA A  V+D   VFS 
Sbjct: 156 VLEGLQDPRNLGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKASAGAMEVMD---VFST 211

Query: 77  -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                  +A A   ++ A           +    +  +         +   ++ G E  G
Sbjct: 212 DDLAGFLQARARQGWLVA--GTVGCPGPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSG 269

Query: 132 LTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVW-----------ECMENSIVSS 176
           L+    A    +++  P     P   SLN+S A  +++            E     ++  
Sbjct: 270 LSRAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVERRREQLLHD 329

Query: 177 EKNVKEQNTPATKGE 191
            ++    +  A   +
Sbjct: 330 PQDPSASSEAARVAQ 344


>gi|23465775|ref|NP_696378.1| RNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|23326465|gb|AAN25014.1| probable RNA methyltransferase [Bifidobacterium longum NCC2705]
          Length = 169

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 29/161 (18%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FS 75
            P++  N G   R       T L LV P      +     +       D   V     F 
Sbjct: 21  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPNFD 77

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG---- 131
           NL E++ +   I A TA               A  L   +       ++FG E  G    
Sbjct: 78  NLVESMPN-SRIIAFTA--------------HATKLYTEVEYKPTDILLFGPEP-GDIPD 121

Query: 132 -LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   E       +  P+ P   SLN++    + ++E    
Sbjct: 122 PMDIMEGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 162


>gi|265984588|ref|ZP_06097323.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|264663180|gb|EEZ33441.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
          Length = 171

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 39/185 (21%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKAR 58
           M P             + L  P +  N G + R  A   F +    L+ P     S++A 
Sbjct: 1   MQPAGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRAL 57

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNE 113
             +      ++                      A  R+                 ++L+ 
Sbjct: 58  KRA--GMDYLEQA--------------------ALTRHPDWHRFDAWRKNAGRRLVLLST 95

Query: 114 RIFS-------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +           +N  ++FGRE  G++      ++  +  P+     SLN++ +V +   
Sbjct: 96  KAAIPYTGYQFQENDILLFGRESAGVSEAIHDNADERLLIPMVRSARSLNLAVSVAMTTG 155

Query: 167 ECMEN 171
           E +  
Sbjct: 156 EALRQ 160


>gi|83999870|emb|CAI59983.1| putative tRNA/mRNA methyltransferase [Streptomyces tenjimariensis]
          Length = 164

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +   ++ G ER GL +EE+ L +     PV  +  S N++ A  + ++E  + 
Sbjct: 108 RKTALVIGNERTGLDDEELKLVDDCTEIPVWGMPHSYNVATATAMAMYEYCKQ 160


>gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 276

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 27/159 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNF--NLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSV 71
           V+++       N+G + R+   F        L+      P E      +++ A  +ID +
Sbjct: 129 VVVMDQITDPHNVGAIMRSAVAFKAG----ALITTHRHSPQESGVLAKAASGALEMIDYI 184

Query: 72  RVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            V  NL EA+ +LH   + +   +    K +           E   +GQ + +I G E  
Sbjct: 185 TV-RNLAEALKELHKADFISFGLDSEGGKPL-----------EIALTGQKIALILGAEGK 232

Query: 131 GL---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL   T E +    A+    +     SLN+S A  + ++
Sbjct: 233 GLRKKTRETV--C-ALARLDMPGNIKSLNVSNAATIALY 268


>gi|251771304|gb|EES51885.1| TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
           ferrodiazotrophum]
          Length = 259

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 12/166 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +  +       A  P++ +   Q   N+G + R      +  + +   R    S+    +
Sbjct: 99  LDDFLEASPGIAPSPLVAVDGVQDPRNLGALLRTCDAAGVGGVLIPRRRVAPLSQTVAKT 158

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           SA A   +  VR+ +     ++        + R        +A  + +            
Sbjct: 159 SAGALFTLPLVRIGN-----LSG-------SLRQLKKEGYAIAALDLSGDPLPEGPLPGP 206

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + ++ G E  G+T   + L++     P+     SLN+S A  + ++
Sbjct: 207 LVLVVGAEEKGVTRPVLDLADWRFRLPMKGKVQSLNLSVAAGIFLY 252


>gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
           gallaeciensis 2.10]
 gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
           gallaeciensis 2.10]
          Length = 290

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82
             N+G + R+      +   ++  R    + +  + +  A   ++        NL + I 
Sbjct: 152 PHNVGAILRSAEVLGAS--AVIGTRHN-SAPETGALAKTASGALERQPYLRMRNLADTIV 208

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L        R       +    E  I        G  V ++ G E  GL  +     + 
Sbjct: 209 ELQ-------RMGFLVLGLDGEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDH 261

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
           ++       F SLN+S A  + ++
Sbjct: 262 LVKIDAAGGFGSLNVSNAAAIALY 285


>gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 250

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + ++ G E  G++       +   S P+     SLN S A  ++ +E +   + +  +
Sbjct: 191 GPIALVIGNEGEGVSRLVRESCDMRASIPMKGEIDSLNASVACGVLAYEIVRQRLSAVGR 250


>gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 324

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 11/156 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           + L +     N+G V R++  F    + +   R    +  A  +SA A   +   R  +N
Sbjct: 178 VALDNISDPRNLGAVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAR-ATN 236

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L   + D            N    ++          +         I+ G E  GL+   
Sbjct: 237 LTRTLKDWA----------NQGMQIVGLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLV 286

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               ++++S P+     SLN S A  +++ E     
Sbjct: 287 RETCDSVLSIPMAGPVESLNASVAAGVVLSEIARQR 322


>gi|297180013|gb|ADI16238.1| rRNA methylases [uncultured bacterium HF0010_16H03]
          Length = 241

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 11/148 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G   R      +  + +   +    +  A   S     VI  +   +NL   +  L
Sbjct: 102 PRNLGACIRCAAVAGVDAMIINKHQCAPLNAVAHKVSVGGAEVI-KLFHVTNLINCLKFL 160

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
           +              ++    E A              +I G E  G+  + +   +  I
Sbjct: 161 N----------EKNINIYGLSEHADESYHECNFKFATALIMGAEESGIREKTLERCDHKI 210

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   N LF S N+S A  +++ E     
Sbjct: 211 NLSGNKLFKSFNVSVATGIILSEANRQR 238


>gi|294776509|ref|ZP_06741983.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294449638|gb|EFG18164.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 268

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 22/172 (12%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++    +  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S  +  ++    +   + + +    F     A T  + +    +L              +
Sbjct: 167 SMGSVFLVPWTWLNGTIGD-LNKFGFRTAAMALTDDSISIDHPIL-------------AA 212

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              + I+ G E  GL  + IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 213 EPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264


>gi|254458669|ref|ZP_05072093.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
 gi|207084435|gb|EDZ61723.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
          Length = 250

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 12/150 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I L   Q  +N+GM+ R+    N+  + L        S     +S+     +  +   + 
Sbjct: 111 IALDGIQNPQNLGMIIRSCAAGNVDGIILPKKSSAKISPLVIKASSGTLFKLP-IYYCNT 169

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L E   DL                + +    A      +   +    + G E  G++ E 
Sbjct: 170 LDEIFPDLD-----------ADTRIYSLSSHAKTSIYDVVPTEKSIFVLGNESDGVSPEV 218

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             L N  IS P+     SLN++    L+ +
Sbjct: 219 EKLCNDSISIPMQRGVESLNVAVTASLLAF 248


>gi|134101781|ref|YP_001107442.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291009830|ref|ZP_06567803.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914404|emb|CAM04517.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 235

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 15/163 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +LV      N G V R         +          + KA  +S  +   +   R     
Sbjct: 84  VLVGISDPGNAGTVVRVADAAGAGAVLFAGDTVDAFNGKAVRASTGSLFHLPVARD---- 139

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----NVGIIFGRERWGLT 133
                D+  ++A     R     ++     A    +    G         +FG E  GL 
Sbjct: 140 ----RDVSAVFAAC---REAGLRLVGADGHATDDLDSADLGGALAAPTAWVFGSEAHGLP 192

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +  A  +  +  P+     SLN++ A  + ++        +S
Sbjct: 193 GDVTAQLDGTLRVPLYGRAESLNLATAAAVCLYASARAQHRAS 235


>gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
           L1-82]
 gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
           L1-82]
 gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1]
          Length = 246

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 34/168 (20%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS------ 70
            IL + +   N+G + R                       A  + A+   +         
Sbjct: 101 FILDNIEDPHNLGAIIRT----------------------ANLAGAHGVIIPKRRAVGLT 138

Query: 71  VRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             V      AI     A +  + AT    ++     +        + +    G  +G++ 
Sbjct: 139 ATVAKTSAGAINYTPVAKVTNLTATMKELKDKGMWFVCADMDGTCMYDLDLKG-PIGLVI 197

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           G E  G+        + + S P+     SLN S A  ++ +E +   +
Sbjct: 198 GSEGEGVGRLVRENCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRM 245


>gi|153806377|ref|ZP_01959045.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
 gi|149131054|gb|EDM22260.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
          Length = 255

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 26/158 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81
           Q   N+G + R    F +  +          + K   ++      I  V+V +++L + I
Sbjct: 113 QDPGNLGTIVRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYTSLPDFI 169

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                      R+      V         + E+  +   + I+ G E  G+  E   L N
Sbjct: 170 -----------RSLGEDIPVFGTFLNGKNMYEQPLTANGL-IVMGNEGNGIGKEVETLIN 217

Query: 142 AIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
             +  P    +P       SLN++ A  ++  E    +
Sbjct: 218 RKLYIP---NYPQGKETSESLNVAIATAVICAEFRRQA 252


>gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 256

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 27/172 (15%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            Y  Q+ +  KG  ++L + Q   NIG + R      L  +          + K   S  
Sbjct: 100 DYHEQIPDDLKGAWLLLDNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQ 159

Query: 63  NAD--------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
            +          +++ +  F    EA       Y T   ++      + P          
Sbjct: 160 GSQFHMKLFTGDILEWMAAFK---EA---GVKTYGTELNDQAISYYDITP---------- 203

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +   +I G E  G+  + +  ++  +  P+N    SLN++ A  ++++
Sbjct: 204 ---TKQFALIMGNEGNGVDPKILEKTDQNLYIPMNGEAESLNVAVATGILLF 252


>gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4]
          Length = 289

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    + G E  GL++E   L++  I  P+     SLN + +  L+++E     
Sbjct: 226 KKTAFLIGNEGNGLSDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1]
          Length = 281

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    + G E  GL++E   L++  I  P+     SLN + +  L+++E     
Sbjct: 226 KKTAFLIGNEGNGLSDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
 gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
          Length = 318

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 11/168 (6%)

Query: 6   PQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
              ++S   P+ + L       N+G V R+   F            G    + RS+   A
Sbjct: 155 QAARDSGNTPLFVALDGVTDPRNLGAVIRSAAAFG---------AQGVLLPERRSAGMTA 205

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                S    + L  A+A  +      A        V    +  + ++    +   + ++
Sbjct: 206 VAWRTSAGTAAKLPIAVA-TNLTRQLRAWASKGLMIVGLDADGTVDIDALELAADPLVVV 264

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL+       +A +S P+     SLN S A  +++ E     
Sbjct: 265 LGSEGRGLSRLVRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312


>gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
 gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
          Length = 281

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    + G E  GL++E   L++  I  P+     SLN + +  L+++E     
Sbjct: 226 KKTAFLIGNEGNGLSDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
          Length = 261

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 19/153 (12%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A  P+++L+       N+G V R+   F     R V       + +  + +  A   ++ 
Sbjct: 109 AGQPLLVLLDRVTDPHNVGAVLRSAEVFGA---RAVIAPHRHSAPETGALAKTASGALER 165

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF---SGQNVGIIF 125
                  NL E          T  + +     ++  +  A +         +G+ V ++ 
Sbjct: 166 QPYLRVGNLGE----------TMEKLKAMGYILVGLEGEASMTLAEGLEGTAGRPVALVL 215

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           G E  GL  +     + ++  P    F SLN+S
Sbjct: 216 GAEGPGLREKTRETCDRLVRIPAAGGFGSLNVS 248


>gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
           292]
 gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 276

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 269


>gi|149917858|ref|ZP_01906353.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
 gi|149821378|gb|EDM80780.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
          Length = 240

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           A  + E +   + + ++FG E  GL+ E  A  +     P++    S N+S +  L ++ 
Sbjct: 136 ATHMLEELPVDRPLCLLFGNEHAGLSPEAKASCDLRFRIPIHGFAESYNLSVSAALTLYS 195

Query: 168 CMENSIVSSEKNVKEQNTPATKGELLSFL 196
                  +  +   +    A   E + F 
Sbjct: 196 VTTRRRAAIGR-AGDLEPGALAIERVRFY 223


>gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
 gi|74876335|sp|Q76NT0|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase
 gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
          Length = 531

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 20/167 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFS 75
           +L +    +N+G + R    FN+  + + N      +  A  SS+ A    VI+      
Sbjct: 377 VLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGACESFVINRT---E 433

Query: 76  NLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +++  +         +  T+  + N  +  L           +I   Q   +I G E +G
Sbjct: 434 SIEGFLKSSQRNGWNVVGTSLDDLNENQPCLD--------INQIKLDQPTILILGNEGFG 485

Query: 132 LTNEEIALSNAIISFPVNPLF--PSLNISQAVLLMVWECMENSIVSS 176
           L    + + N  I   V   +   SLN+S    +++   + +  +  
Sbjct: 486 LKPSVLEICNKTIKI-VGGNYKIDSLNVSVTSGILIHTLLSSGTLPK 531


>gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 312

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 21/149 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE--KARSSSANADCVIDSVRV 73
           +I+L       N+G + R+   F      ++  +   P E      ++  A   I  +RV
Sbjct: 169 IIMLDQISDPRNVGAILRSARAFGCD--AIITTQRHAPEENGALARTATGALEHIPIIRV 226

Query: 74  FSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             NL    E++ D     A  A +                    +     + I+ G E  
Sbjct: 227 V-NLARAVESLQDHDITVAGLAGDGTMD-------------VGALADFPRLAIMLGAEGP 272

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           GL        + ++   + P   SLN+S 
Sbjct: 273 GLRRLSREHCDHLVRIDIAPDADSLNVSI 301


>gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10]
 gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens
           MLS10]
          Length = 251

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 59/151 (39%), Gaps = 21/151 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +T + + +      + K   S+  +   I   ++  +L+EA+ 
Sbjct: 116 QDPGNLGAMIRTAEAAGITGVVIGDGTVDVYNGKVIRSTQGSLFHIPVQKM--DLEEAVE 173

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   ++ T+   + +  + L P++                +I G E  G+    + 
Sbjct: 174 ICKEANVPVFGTS--LQGSTFNALEPQD-------------TFALIMGNEGSGVRARLLE 218

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           +++  +  P+     SLN++ A  ++++   
Sbjct: 219 MTDQNLYIPIYGKAESLNVAVACGIVLYHLR 249


>gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
 gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 295

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA 64
           +L    K P+I +L       N+G + R+   FN     +   R         + S++ A
Sbjct: 135 KLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGA-VITTIRHSPTESGVLAKSASGA 193

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +I  +++ +NL + + +LH +   +    +   + +          E+ F+G  + ++
Sbjct: 194 LELIPYIQI-TNLADTLGELHKLGFFSVGLDSEGPAPI----------EQTFTGAKIALV 242

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            G E  GL  +     +A+    +     SLN+S A  + ++
Sbjct: 243 LGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALY 284


>gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           owensensis OL]
 gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           owensensis OL]
          Length = 253

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS- 75
           ++L      +N G + R+        + +        +     +SA A   +   RV + 
Sbjct: 97  VLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNL 156

Query: 76  --NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              ++E      +++A  A +    K V    E    +           I+ G E  G++
Sbjct: 157 RRTIEELKEKGIWVFAADASS---PKPVY---ECDFTI--------PACIVIGSEGKGIS 202

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
                 ++ +I  P      S N S A  ++ +E ++  +   E
Sbjct: 203 RLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQRLKEGE 246


>gi|77024987|gb|ABA61413.1| rRNA methylase [uncultured marine group II euryarchaeote
           HF70_39H11]
          Length = 232

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 14/150 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G   R       + L +      W S+           +I +    +     + 
Sbjct: 95  QYQTNVGFCIRVAEVSGASGLIVTG---EWTSDDRHR-------IIRAAMRTNRFMPVVF 144

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A     ++    VLA ++             +V +I G E  G++ E +  ++ 
Sbjct: 145 GCDELAAL----KSWKGRVLAIEDVGTEEPWDADLTGDVILIIGGENAGVSKELLEAADQ 200

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I  P+    PS N+   + ++  E +   
Sbjct: 201 TIRIPMAGFTPSYNLQAPMAVVAVEALRQR 230


>gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 247

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 19/148 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSVRVFSNLKEA 80
             NIG + R+  +F++  L +V  R      K    +A+       + +   + S LK  
Sbjct: 108 PRNIGSLIRSASSFHIDGL-IVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNL 166

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                ++Y   AR   +F                I       ++FG E +G+       +
Sbjct: 167 REKNFWVYGFDARGEKDF--------------TEIKWEGKNVLLFGSEGFGMREHTGKYT 212

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +  +   +N    SLNIS +  ++    
Sbjct: 213 DFFVKIDINKDVESLNISNSAAIVFHHL 240


>gi|54020641|ref|YP_116168.1| hypothetical protein mhp660 [Mycoplasma hyopneumoniae 232]
 gi|53987814|gb|AAV28015.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 233

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L       ++IL   Q   N+G + R    F +  + L   R    +E     S+    
Sbjct: 73  TLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFV 132

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  + + +++  AI  L            +F       +      + I       II G
Sbjct: 133 GLKFI-LVNSIVSAINKL---------KEMDFWIYATDLKEKSRKIQEIQFNYPCAIILG 182

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  G+    +  S+     P+     SLN++ A  ++++   +N
Sbjct: 183 NEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQN 227


>gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 355

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 26/167 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------- 68
           V++L   Q   N+G + R+   F+     L+       ++KA  +S  A   +       
Sbjct: 199 VLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALRASRGASFQLPIVSGNW 258

Query: 69  DSVRVFSNLKEAIADLHFIY-----ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           + ++V         +          AT+ +       +    E A  + E+      + +
Sbjct: 259 NHLKVLE------HEFQMKLLAGHPATSTQKPKLVSKLSV--EFAQSVAEK-----PLCL 305

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           I G E  GL+ +   +   ++S P+   F SLN+S A  + ++    
Sbjct: 306 ILGSEGNGLSEQSRKVC-ELVSIPMAGDFESLNVSVAGGIFLFMLQS 351


>gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
           BS107]
 gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
           BS107]
          Length = 290

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 12/144 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--NLKEAIA 82
             N+G + R+      +   ++  R    + +  + +  A   ++        NL + I 
Sbjct: 152 PHNVGAILRSAEVLGAS--AVIGTRHN-SAPETGALAKTASGALERQPYLRMRNLADTIV 208

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L        R       +    E  I        G  V ++ G E  GL  +     + 
Sbjct: 209 ELQ-------RMGFLVLGLDGEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDH 261

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
           ++       F SLN+S A  + ++
Sbjct: 262 LVKIDAAGGFGSLNVSNAAAIALY 285


>gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
           4571]
 gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
           4571]
          Length = 250

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 18/150 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R+     +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++I+ T               + A        +     ++ G E  G+       
Sbjct: 169 LKKRGYWIFGT---------------DMAGTDYREWNAKGKTVLVIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +  I+ P+     SLN S A  +++++  
Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAY 243


>gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 358

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 22/162 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N+G V R+     + +  + + R+  P +     +SA A  V+D   VF+ 
Sbjct: 185 VLEGLQDPRNLGAVMRSAHFLGVDR-VITSQRNSCPLTPVVSKASAGAMEVMD---VFAT 240

Query: 77  ------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 L+        +  T          +    +  I         +   ++ G E  
Sbjct: 241 PDLPGFLQAKAQQGWLVVGTVG---CPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGS 297

Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVW 166
           GL+ E  A    +++       P  P   SLN+S A  +++ 
Sbjct: 298 GLSQEVFASCQLLLTILPRRHLP--PGLESLNVSVATGILLH 337


>gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
 gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
          Length = 249

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 20/161 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L + +   N+G + R         + +   R    +     +SA A       +V   
Sbjct: 104 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKHRAAGLTATVAKTSAGALNYTPVAKVTNL 163

Query: 74  FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++E     L F+ A      +    V+           R+     +G++ G E  G+
Sbjct: 164 VKTMEELKEKGLWFVCA------DMDGDVMY----------RVNLKGPIGLVIGNEGEGV 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                   +   + P+     SLN S A  ++ +E +   +
Sbjct: 208 GRLVKETCDMTAAIPMKGDIDSLNASVAAGVLAYEIVRQRM 248


>gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
 gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
          Length = 295

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 7   QLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANA 64
           +L    K P+I +L       N+G + R+   FN     +   R         + S++ A
Sbjct: 135 KLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGA-VITTIRHSPTESGVLAKSASGA 193

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +I  +++ +NL + + +LH +   +    +   + +          E+ F+G  + ++
Sbjct: 194 LELIPYIQI-TNLADTLGELHKLGFFSVGLDSEGPAPI----------EQTFTGAKIALV 242

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            G E  GL  +     +A+    +     SLN+S A  + ++
Sbjct: 243 LGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALY 284


>gi|260903742|ref|ZP_05912064.1| rRNA methylase [Brevibacterium linens BL2]
          Length = 340

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G   R      L    LV+P    P   +A   S      +   R+    ++ IA L 
Sbjct: 206 NVGSAFRNAAALGL-DAVLVSPTCADPLYRRAVRVSMGTVFQVPWTRI-PEWEKGIAGLK 263

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
                         + +   E AI L+E +    +N+ ++FG E  G+T E  AL +  +
Sbjct: 264 AA--------GYVLAGMTLGEGAITLDELVAEDHENLALVFGTEGHGITPETDALLDRRV 315

Query: 145 SFPVNPLFPSLNISQ 159
           + P+     SLN++ 
Sbjct: 316 TIPMMGGVDSLNVTA 330


>gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
 gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
          Length = 240

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEK-ARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+   F++  + L  P+D  P+E  + + +A     +  +   +NL+  +  L 
Sbjct: 108 NIGAIIRSSAAFDIDAIIL--PQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLK 165

Query: 86  ----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
               +I   T    + F              +++ S   + ++FG E  G+        +
Sbjct: 166 KHGFWIIGLTGSANDYF-------------TDKLISD-KMALVFGSEDKGIRRLVEETCD 211

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECME 170
            +    ++    SLN+S A  ++     +
Sbjct: 212 YLAKILISKRVESLNVSNAASIIFHSLHK 240


>gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1]
 gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1]
          Length = 242

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 10/160 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q+++     V+IL   Q   N G + R+     + Q+ +++ +  + +     +SA    
Sbjct: 83  QMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIVILDHKQVFVNSTVVKTSAGTVY 142

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            ++  +V +NL  AI DL          +N F        +      ++       I+ G
Sbjct: 143 DMNISKV-TNLSNAIKDLQ---------KNGFWIYSTHLNSESNDMRKVDFANRTAIVIG 192

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E  G+++  +  S+  +  P      S N + A  L+++
Sbjct: 193 NEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILY 232


>gi|265756534|ref|ZP_06090740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233722|gb|EEZ19337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 251

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78
           Q   N+G + R    F +  +          + K   ++  A   +  V+V       L 
Sbjct: 111 QDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 167

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E++AD+  +Y T                +  ++     S   + I+ G E  G++ E   
Sbjct: 168 ESLADIP-VYGT--------------FLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEK 211

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173
           L N  +  P    +P       SLN++ A  ++  E     +
Sbjct: 212 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 250


>gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 239

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +++     V+IL + +   N G + R    F +  +          ++    +S  A   
Sbjct: 84  IKDKKNALVLILDEIEDPRNFGAIIRTANAFGVDAIIYKKHHQASINDLVIKTSMGAINY 143

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I  + V +NL   I +L     ++YAT+      +              E++        
Sbjct: 144 IYMIEV-NNLSNTIKNLQDEGFWVYATSLLKSQPY--------------EKVDYANKTVF 188

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           I G E  G++   +  ++  I   +     SLN+  A  +++
Sbjct: 189 IVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230


>gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 253

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           + +   + P ++L+      +N G + R+        + +        +     +SA A 
Sbjct: 86  EARQREEAPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAI 145

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +   RV +    ++E      +++A  A +    K V    E    +           
Sbjct: 146 EYMKIARVVNLRRTIEELKEKGIWVFAADASS---PKPVY---ECDFTI--------PTC 191

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           I+ G E  G++      ++ +I  P      S N S A  ++ +E ++  +   E
Sbjct: 192 IVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQRLKEGE 246


>gi|291458961|ref|ZP_06598351.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418215|gb|EFE91934.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 248

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + + +      S K   S+  +   +   R+  +LKE IA
Sbjct: 105 QDPGNLGTIFRLAEAAGVNGIYMSSDCADIYSPKLVRSTMGSLYRLPF-RIVPDLKETIA 163

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L          R     +L   E A    +          + G E  GL+ E    ++ 
Sbjct: 164 ELKKKG-----VRCFASHLLG--EKAHYDCDFRSP---TAFLIGNEGRGLSPELSEAADI 213

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  P+     SLN + A  ++ +E +   
Sbjct: 214 RLRIPMKGGVESLNAAAAAAILSYETLRQR 243


>gi|253568346|ref|ZP_04845757.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842419|gb|EES70499.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 252

 Score = 47.4 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 27/169 (15%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            +   + L D Q   N+G + R    F +  +          + K   ++      I  V
Sbjct: 100 RQSLCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARV 156

Query: 72  RV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +V +++L E I  L                V         + E+  S   + I+ G E  
Sbjct: 157 KVHYTSLPEFIHSL------------GDAPVFGTFLDGENMYEQPLSTNGL-IVMGNEGN 203

Query: 131 GLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
           G+  E  AL N  +  P    +P       SLN++ A  ++  E    +
Sbjct: 204 GIGKEVEALINRKLYIP---NYPQGKETSESLNVAIATAVICAEFRRQA 249


>gi|330959300|gb|EGH59560.1| hypothetical protein PMA4326_12164 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 166

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 20/152 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +           + + K    +   D + D+ ++  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFITDTKKIHQ 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   E A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIEDLKSIL-----PLGCIPVAVELVEGARALPEYTHPDRAL-YIFGPEDGSLDQ 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E       ++  P       +N++  V ++++
Sbjct: 112 EIRDWCEDVVYIPTEGC---MNLAATVNVVLY 140


>gi|294463916|gb|ADE77479.1| unknown [Picea sitchensis]
          Length = 327

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 10/173 (5%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NI  V R         + ++        +K+R+ S  ++  +D +  + N  E      
Sbjct: 143 GNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSMGSEKWLD-IEQWDNTWE----CF 197

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
            +     R+R    +V       + +++         I+ G E  G++ E +  S+   S
Sbjct: 198 EVL----RSRGYRIAVTHVGNDTVSVHDM-DWTLPTAIVLGNEHRGISGEALKFSDIKCS 252

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDY 198
            P+  +  S N+S A  + +   + + I     +   +           +L +
Sbjct: 253 IPMTGMVDSFNVSVAAGIFMHAAVHDRISRMGSHGDLRPKECQILAAEFYLRH 305


>gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
 gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
          Length = 249

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            ++G++ G E  G++       +   S P+     SLN S A  ++ +E +   ++ 
Sbjct: 191 GSIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLAYEIVRQRLLQ 247


>gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
           16841]
 gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
           16841]
          Length = 284

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                + G E  GL++E   L++  I  P+     SLN + +  L+++E     
Sbjct: 213 GATAFMIGNEGNGLSDETADLADTYIKIPMCGQVESLNAAISASLLMYETNRQR 266


>gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 275

 Score = 47.0 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150
           R++      + P      L + +   + Q V I+ G E  GL    +  S+  +  P++ 
Sbjct: 193 RDQGFRLLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTMRASDVRVRIPMSR 252

Query: 151 LFPSLNISQAVLLMVWE 167
              SLN++ A  L  +E
Sbjct: 253 GTDSLNVATAAALAFYE 269


>gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
           acidiphila DSM 44928]
 gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
           acidiphila DSM 44928]
          Length = 339

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 10/153 (6%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G V R++  F      +V         + R++   A     +    + L  A A  
Sbjct: 197 PRNLGAVMRSVAAFG-GHGVIV--------PERRAAGMTAGAWKAAAGAGARLPVARAG- 246

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
           +   A  A  +          + ++ L+E   + + + ++ G E  G++     L +  +
Sbjct: 247 NLTRALEAYKKQGVMVAGLAADGSVPLHELEIATEPLCLVIGSEGKGMSRLVSELCDVTV 306

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           S P+     SLN   A  + ++E       +  
Sbjct: 307 SIPIASTTESLNAGVAAGIALYEVNRRRAEARG 339


>gi|158520421|ref|YP_001528291.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
 gi|158509247|gb|ABW66214.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
          Length = 490

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 24/151 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEA 80
           Q  EN G   R+   F   ++ L++        K   +SA A  V+    +F   +LK+ 
Sbjct: 360 QDPENAGAAIRSAVAFGAAKIVLLSECAHPFHPKTIRASAGA--VL-HAPLFEGPSLKDL 416

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
             DL                ++        +    F     G++ G E  GL +   + +
Sbjct: 417 PEDL---------------PIVPLSMEGAPITGFSFPAA-FGLLAGIEGPGLPDAWRSRA 460

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +S PV     SLN + A+ + ++   + 
Sbjct: 461 ---VSIPVTGAVESLNAATAIAVALYAWSQA 488


>gi|302530537|ref|ZP_07282879.1| RNA methyltransferase [Streptomyces sp. AA4]
 gi|302439432|gb|EFL11248.1| RNA methyltransferase [Streptomyces sp. AA4]
          Length = 276

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
           R R    + L P+  ++ L   R      + ++ G E  GLT+E I  ++  +   +   
Sbjct: 192 RARGFTVAALTPRADSVPLRGLREKVPGPIALLLGAEGPGLTDEAIEAADVAVRVEMVSG 251

Query: 152 FPSLNISQAVLLMVWEC 168
             SLN++ A  +   E 
Sbjct: 252 VDSLNVATAAAIAFHEV 268


>gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 284

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 14/153 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           ENIG + R      +    L       P      R S  +A  V      F+   E    
Sbjct: 144 ENIGSIFRNAAGLGI-DAVLFGAGCADPLYRRCVRVSMGHALLVP-----FARFDEWPRG 197

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L  +     R        L P  AA+ L  +      VG + G E  GL+   +A ++  
Sbjct: 198 LDAL-----RAGGFRLISLTPDPAAMPL-AQAVEATKVGFLVGAEGPGLSAHAMAATDVR 251

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              P++    SLN++ A  +  +E   +  + +
Sbjct: 252 ARIPMSRGTDSLNVATAAAIAFYERARSGTMEA 284


>gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 264

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 68/167 (40%), Gaps = 13/167 (7%)

Query: 8   LQNSAKGPVIILV-DP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           L+    G + I+V +  Q   N+G + RA     +T + +        + K   S+  + 
Sbjct: 104 LKAPRNGKLAIMVLETIQDPGNLGTIVRAAEGAGITGIVMNRETTDIYNPKVIRSTMGSI 163

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           C +  V V  ++++A              +++   + A     +   ++     NVG + 
Sbjct: 164 CRMPFVCV-DDIRQACQ----------TMKDSGVRLFAAHLKGMNNYDQEDYTDNVGFLI 212

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GLT+   A+++  +  P+     SLN + A  ++++E     
Sbjct: 213 GNEAGGLTDGTAAMADCYVKIPMAGRVESLNAAVAASVLMFEAARQR 259


>gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 317

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 61/167 (36%), Gaps = 11/167 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
               ++  G V+ L +     N+G V R++  F    + +          + RS+S  A 
Sbjct: 157 RAADSATPGLVVALDNITDPRNLGAVIRSVAAFGGHGVVI---------PERRSASVTAV 207

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
               S    + L  A A  + + A     +N ++ V+          +         ++ 
Sbjct: 208 TWRTSAGTAARLPVAKA-TNMVRALKQFQQNGYQ-VVGLDAGGEHTLDTYDGTTPTVVVV 265

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL+      ++ I+S P+     SLN S A  +++ E     
Sbjct: 266 GSEGKGLSRLVGETADTILSIPMADKVESLNASVAAGVVLSEFARQR 312


>gi|330446283|ref|ZP_08309935.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490474|dbj|GAA04432.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 155

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 28/163 (17%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +NS     I L +P+  EN+G V RA   + +  +     R                   
Sbjct: 3   KNSQGYSCIGLFNPKTPENVGSVMRAAGCYGVNSVFYTGTRYDH---------------- 46

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK-----EAAIVLNERIFSGQNVGI 123
            + +  ++ K+A  D+  I       R+       P      + A  L E     +    
Sbjct: 47  -AAQFCTDTKKAALDIPLIG--VEDLRDIIPVGCVPVAVDLIDDAKPLPEYKHP-KRAFY 102

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           IFG E   L  +        I  P       +N++ AV ++++
Sbjct: 103 IFGPEDGTLKKDITDFCRETIYVPTKGC---MNLAAAVNVILY 142


>gi|218547893|ref|YP_002381684.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218355434|emb|CAQ88042.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|323967625|gb|EGB63038.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|323978389|gb|EGB73474.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|327252291|gb|EGE63963.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli STEC_7v]
          Length = 345

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +    + + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPEKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|262047374|ref|ZP_06020331.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|260572348|gb|EEX28911.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
          Length = 255

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P      + K + +   +   ID ++   
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVL-SPESADLYNPKTQRAMQGSQFHIDLIKR-- 170

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAP--KEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           +L   I D            +    V A     +A  L +       + +I G E  G++
Sbjct: 171 DLANVITDFQ----------DAAIPVYASLLDRSAKQLPD-FEKVPQLALIIGNEAHGIS 219

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +L++  +  P+     SLN + A  +M++
Sbjct: 220 KTIASLADEKLYIPIKGQAESLNAAVAAGIMIY 252


>gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
 gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
          Length = 244

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 19/160 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       N G + R+        +     R    +     ++A     +   +V +NL
Sbjct: 96  ILDGITDPHNFGALIRSAAAAGCQGVIFAKDRSCPVTGIVEKTAAGTLGYVQLCQV-TNL 154

Query: 78  KEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             AI +L     ++Y                 E    L E   S   + ++ G E  G+ 
Sbjct: 155 GRAIEELKKAGVWVYGLAG-------------EEGQSLFEAPLS-APIALVAGSEGRGIR 200

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                L + +I+ P+     SLN+S A  + ++E + N +
Sbjct: 201 PLIRKLCDGLIAIPMPGRVESLNVSVATGIALFEVVRNHL 240


>gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
 gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
          Length = 267

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 21/161 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVID---SVRV 73
           +L   Q   N+G + R      +T   +V+       + K   S+  +   I    S  +
Sbjct: 121 VLDSLQDPGNMGTIIRTADAAGVTG-VIVSKGCVDVYNPKVLRSTMGSLFHIPICYSENI 179

Query: 74  FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              L+E     +    A  + ++N F                +    N+ II G E  G+
Sbjct: 180 LQTLEEMKNKGIRLCAAHLSGSKNYF---------------ELDYKDNIAIIVGNEANGI 224

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           ++    +SN ++  P+     SLN S A  L+++E +   +
Sbjct: 225 SDSVAGISNELVRIPMAGKSESLNASVAAGLLMYEVLRLRM 265


>gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
          Length = 254

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 20/164 (12%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--- 73
           I+L + +   N+G + R         + +   R    +     +SA A       +V   
Sbjct: 107 ILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNL 166

Query: 74  FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              ++E     L F+ A                     + +   +G  +G++ G E  G+
Sbjct: 167 VKTMEELKEKGLWFVCA---------------DMDGEQMYDLNLTG-PIGLVIGNEGEGV 210

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                   + +   P+     SLN S A  ++ +E +   I   
Sbjct: 211 GRLVKENCDFVAGIPMKGQINSLNASVAAGVLAYEIVRQRISQK 254


>gi|316932736|ref|YP_004107718.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris DX-1]
 gi|315600450|gb|ADU42985.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           DX-1]
          Length = 151

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 29/165 (17%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            I L  P + +N G   R  A  N    +  ++ P  G+P+       +     +D V +
Sbjct: 2   RIALFQPDIPQNTGTTLRFCACLNV---EAHIIEP-AGFPTSDRHFRRSG-MDYLDQVSI 56

Query: 74  FS-----NLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                    ++    A    I  TT   R  F+    P +                ++ G
Sbjct: 57  VRHDSWLKFEQWRENAGCRLILLTTKGERPYFEQRYQPTDV---------------LMLG 101

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           RE  G+ ++  A ++A +  P+ P   SLN++ A  ++  E +  
Sbjct: 102 RESAGVPDDVAAAADARVVIPMQPGLRSLNVAMAAAMVTGEALRQ 146


>gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 246

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 25/174 (14%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSS 61
           P A QL     G  ++L D +   N+G + R    F + QL   +   D + + K   ++
Sbjct: 93  PEAAQL--DRSGLTLLLDDVRDPGNLGTIIRLCDWFGIKQLVCSIGTVDCY-NPKVVQAT 149

Query: 62  ANADCVIDSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
             +   +D   +++NL+E +  D   ++ T                    +       + 
Sbjct: 150 MGSLTRVD--VIYTNLEEYLENDSREVFGT--------------FMDGTNIYNTSLPAEG 193

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECMEN 171
           V II G E  G++ E  A+ +  I+ P         SLN++ A  + + E    
Sbjct: 194 V-IIMGNEANGISRETEAVVSNRIAIPRFGDLQETESLNVATATAICLSEFKRG 246


>gi|332023938|gb|EGI64156.1| Putative methyltransferase TARBP1 [Acromyrmex echinatior]
          Length = 828

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 13/151 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAIADLH 85
           N+G +AR    F +  L  V   D    ++ +  S +AD  ++ ++V    L++ + D  
Sbjct: 689 NLGGIARTCEIFGVKALV-VANADCVKDKEFQYLSVSADKWLNILQVKPYELQKFLLD-- 745

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAII 144
                    +N   S++  ++     N    +  +   ++ G E+ G+    I L +  +
Sbjct: 746 --------RKNTGWSLIGVEQTVNSTNLMTTTFEKRTILVLGNEKDGIPANFIPLFDKCV 797

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             P   +  SLN+     + +W+     I+ 
Sbjct: 798 EIPQVGVTRSLNVHVTAAICIWQYANQHILK 828


>gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 235

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEAI- 81
             N+G + R +    L  + +        +      S  A   ++  +VF  +NL + I 
Sbjct: 97  PHNLGAILRTVEACALDGVIMSKKNQVPLNSTVAKISCGA---LEYTKVFLVTNLHQTIL 153

Query: 82  ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
               +   I  T + +  +F               +I    ++GII G E  G+ +    
Sbjct: 154 KLKKNQVLIVGTDSNSSQSFH--------------QIPKNSSLGIIVGNEGTGIRHLLKK 199

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
             + ++  P+     SLN+S A  LM++
Sbjct: 200 QCDLLVKIPMYGKINSLNVSVAAALMIY 227


>gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
           uraniireducens Rf4]
          Length = 242

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 21/170 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           L     G +++L   Q   N+G + R+        + +  PRD      A    +SA A 
Sbjct: 86  LVPGTDGLLLVLDGVQDPHNLGALIRSAACAGAQGVII--PRDRAVGVTATVEKASAGAI 143

Query: 66  CVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             I    V +    L+E                  F    A  E+ + + ++  +G  V 
Sbjct: 144 ETIPVAEVTNVAHTLEEL-------------KNAGFWIYGADGESPLSIFDQKLTGA-VV 189

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++ G E  G+        + ++S P+     SLN S A  ++++E +   
Sbjct: 190 LVIGSEGEGIRPLVKKKCDFLVSIPLRGGVNSLNASVAGGILLFEVVRQR 239


>gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 316

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 17/173 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            E  GL+       + ++S P+     SLN S A  +++ E         E +
Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREAS 314


>gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
 gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
          Length = 263

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 11/172 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     +L ++    +++L   Q   N+G + R      +T + +        + K   S
Sbjct: 100 MNHEINELTSAKCPLIMVLDHLQDPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRS 159

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +  +   +  V    +L + I DL     TT           A         +       
Sbjct: 160 TMGSIYRMPFV-YVEDLGKGIQDLKDKGITT----------YAAHLEGTNSYDEEDLTNP 208

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              + G E  GL  E   +++  +  P+     SLN + A  ++++E     
Sbjct: 209 CAFLIGNEGNGLRREIADMADCYVKIPMLGQVESLNAAIASSVLMFEAARQR 260


>gi|237710454|ref|ZP_04540935.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455176|gb|EEO60897.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 258

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78
           Q   N+G + R    F +  +          + K   ++  A   +  V+V       L 
Sbjct: 118 QDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 174

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E++AD+  +Y T                +  ++     S   + I+ G E  G++ E   
Sbjct: 175 ESLADIP-VYGT--------------FLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEK 218

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173
           L N  +  P    +P       SLN++ A  ++  E     +
Sbjct: 219 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 257


>gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 246

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         S+ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +     + AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 EEAK-----EAAIP----VLATT-----LSKDSVDYRELPPI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|171742258|ref|ZP_02918065.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC
           27678]
 gi|283456632|ref|YP_003361196.1| RNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|306822199|ref|ZP_07455581.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309802286|ref|ZP_07696394.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium
           dentium JCVIHMP022]
 gi|171277872|gb|EDT45533.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC
           27678]
 gi|283103266|gb|ADB10372.1| RNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|304554581|gb|EFM42486.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221169|gb|EFO77473.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium
           dentium JCVIHMP022]
          Length = 228

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 49/159 (30%), Gaps = 25/159 (15%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLK 78
            P++  N G   R       T L LV P      +     +       D   V    +  
Sbjct: 80  SPRIPGNTGSAIRLCAVTG-TILHLVEPLGFNLRDTKLRRA--GLDYHDMAHVVLHPDFD 136

Query: 79  EAIADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN-- 134
             +  +    I A TA               A  L   I       ++FG E   + +  
Sbjct: 137 NLVQSMPNSRIIAFTA--------------HATKLYTEIEYKPTDILLFGPEPGDIPDPM 182

Query: 135 EEIALSNAI--ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +A  +    +  P+ P   SLN++    + ++E    
Sbjct: 183 DIMAGPHVAEQVRLPMRPSLRSLNLTNCASIAIYEAWRQ 221


>gi|149919873|ref|ZP_01908349.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
           SIR-1]
 gi|149819320|gb|EDM78753.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
           SIR-1]
          Length = 325

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 10/152 (6%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            +++L   Q   N+G V R    F  T +     R    S  A  SSA A   +   +V 
Sbjct: 179 IIVLLDGVQDPHNLGAVIRNAEFFGATAVVWGQDRAAPLSAVAVRSSAGATERLPLGQV- 237

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLT 133
           +N+  A+          A+    +  V    +    ++E       ++ ++ G E  G+ 
Sbjct: 238 TNVARALEQ--------AKASGTWWVVGTVVDEGTPVHEFAQDPPSDMILVLGSEERGMR 289

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                  + +++        SLN+S A  + +
Sbjct: 290 RLTRERCDFLVTIARGGSLGSLNVSAAGAVAL 321


>gi|229589046|ref|YP_002871165.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25]
 gi|229360912|emb|CAY47772.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 155

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 20/152 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +  +       G   E+AR      D + D+ +V  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVASVF----YTGVRYERAR------DFITDTKKVHH 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   E A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIDDLKKIL-----PLGCIPVAVELVEGARPLPEYTHPDRAL-YIFGPEDGSLDK 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E       ++  P       +N++  V ++++
Sbjct: 112 EIRDWCEDVVYIPTTGC---MNLAATVNVVLY 140


>gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 316

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 12/161 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +     N+G V R++  F    + +   R    +  A  +SA     +   RV +N
Sbjct: 166 VILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVARV-TN 224

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN-VGIIFGRERWGLTNE 135
           +   + D                 V+          +    G + V I+ G E  G++  
Sbjct: 225 VTRTVQDFQ----------KAGYQVVGLDAGGEHTLDTYNGGTDPVVIVIGSEGKGISRL 274

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                +AI+S P+     SLN S A   ++ E       + 
Sbjct: 275 VRENCDAIMSIPMTDWVESLNASVAAGAVLSEFARQRRAAQ 315


>gi|68535492|ref|YP_250197.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68263091|emb|CAI36579.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 306

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 12/150 (8%)

Query: 26  ENIGMVARAMWNFNLT-QLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           ENIG + R      L     L       P   ++   S      +   R          D
Sbjct: 164 ENIGSIFRNAA--GLNVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRD 221

Query: 84  LHFIYATTARNRNNFKSVLAP--KEAAIVLNERIF-SGQNVGIIFGRERWGLTNEEIALS 140
           L  +     + R      L P          E     G+ V ++ G E  GLT   +  +
Sbjct: 222 LELL-----QRRGYEVVALTPAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAA 276

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +   S P+     SLN++ A  +  +E + 
Sbjct: 277 DVRASIPMARGTDSLNVATAAAIAFYEAVR 306


>gi|262368611|ref|ZP_06061940.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262316289|gb|EEY97327.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 258

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL + Q   N+G + R+     + Q+          S +   +   A   ++    + 
Sbjct: 116 TLILENIQDPGNVGTLLRSAAAAGIKQVICTKGSAALWSPRVLRAGMGAHFSLN---TYE 172

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+  AI D+          R      +     A  L ++  + Q    I G E  G+++ 
Sbjct: 173 NV--AIEDVL--------ERFEIPVYVTSSHQAESLYQKDLT-QACVWILGNEGQGVSDF 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +A + A+ S P      SLN++ A  +  +E +   +
Sbjct: 222 ALAHAQAL-SIPQPGGQESLNVAIAGSICFFEMVRQRL 258


>gi|162454190|ref|YP_001616557.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce
           56']
 gi|161164772|emb|CAN96077.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce
           56']
          Length = 175

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +L        + +   +   NIG + R   +F + ++ L+       +E     ++   
Sbjct: 15  EELAPLRNDFSVAVCRAKNPFNIGAIIRVAHSFLVREIFLIG------TEPYYERASMG- 67

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
                ++ +  + E   +  F+ A  AR R     +   ++ A          + +  +F
Sbjct: 68  -----MQKYETIVECPDEASFLEA--ARGRPL---IGVERDHARRTLWEAPFPRGLVFLF 117

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL    +     +I+ P+  +  S  ++ A  + + E     
Sbjct: 118 GSEDDGLPQALLDACEDVIAIPMYGINHSYPVAIAAGMTLCEWARRR 164


>gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
 gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
          Length = 323

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 23/174 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDSVRVFS 75
           IL       N G   RA     + Q  +V PRD     +  A  ++A A   +  V   +
Sbjct: 165 ILDGVTDPRNFGACLRAADAAGV-QAVIV-PRDRSARMTPAAAKAAAGAAETVP-VVSVT 221

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL  AI +L     F+  T          V                 +    + G E  G
Sbjct: 222 NLASAIMELRDNGVFVAGTAGETDTTIYDV--------------AQARAFAWVLGAEGEG 267

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           L        + + + P+     SLN+S A  + ++E +   I +        + 
Sbjct: 268 LRQLTRRRCDVLAAIPMVGSVESLNVSVASGICLFESLRQRIAAGLVQPGSPDE 321


>gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix
           jacchus]
          Length = 350

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 20/178 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76
           +L   Q   N G V R      + ++          +     +SA A  V+D   VFS  
Sbjct: 149 VLDGIQDPRNFGAVLRCAHFLGVDKIITSRKNSCPLTPVVSKASAGAMEVMD---VFSTD 205

Query: 77  -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L+        +  T          V    +  I  +      Q   ++ G E  G
Sbjct: 206 DLTGFLQTKAQQGWLVAGTVG---CPGPKVPQSSKIPITSSLEFLWDQPTLLVLGNEGSG 262

Query: 132 LTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
           L+ E  A    +++       P  P F SLN+S    +++            +  + Q
Sbjct: 263 LSQEVQASCQLLLTILPRRQLP--PGFESLNVSVVAGILLHSICSQRKGFPAEGERRQ 318


>gi|237726961|ref|ZP_04557442.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229433817|gb|EEO43894.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 226

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78
           Q   N+G + R    F +  +          + K   ++  A   +  V+V       L 
Sbjct: 86  QDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 142

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E++AD+  +Y T                +  ++     S   + I+ G E  G++ E   
Sbjct: 143 ESLADIP-VYGT--------------FLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEK 186

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173
           L N  +  P    +P       SLN++ A  ++  E     +
Sbjct: 187 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 225


>gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
 gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
          Length = 243

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 18/144 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81
           Q   N+G + R+   F+   + L+N      +EK   +S  +   ++ + V  ++LK+ +
Sbjct: 108 QDPGNLGTIIRSAEAFSFKDIILLNSCVDIYNEKTIRASMGSIFRLNFIEVEINDLKDLL 167

Query: 82  -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
             +   + A                +      +   S   + +  G E  G++     LS
Sbjct: 168 DKNYKLVLA----------------DMNGKSVDYYKSCDKIILAIGNEANGISKSLKGLS 211

Query: 141 NAIISFPVNPLFPSLNISQAVLLM 164
           N  +S  ++    SLN + A  ++
Sbjct: 212 NDFVSIKMDGRIESLNAAIAASIL 235


>gi|47458982|ref|YP_015844.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458310|gb|AAT27633.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 230

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 10/157 (6%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V+IL   Q   N G + R+   F    + + + R    ++ A   S+     +  +++  
Sbjct: 83  VLILDHIQDSFNFGSILRSANAFGWNYIIIPSKRSVEINDVALKVSSGGFYNVKIIKI-D 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L  AI  L           + F    +  +      +       +G+I G E  GL+  
Sbjct: 142 SLIVAINFL---------KEHGFWIYGSMLDENSFEIKNAPINFPIGLIIGNEHSGLSKT 192

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I   +  +   ++    SLN + A  +++ +  + S
Sbjct: 193 MINSLDVKVKIMMSGTVQSLNAAVATGILLHDLSKKS 229


>gi|312959593|ref|ZP_07774110.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
 gi|311286310|gb|EFQ64874.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
          Length = 155

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 20/152 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +  +       G   E+AR      D V D+ +V  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVASVF----YTGVRYERAR------DFVTDTKKVHH 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   E A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIDDLKKIL-----PLGCIPVAVELVEGARPLPEYTHPDRAL-YIFGPEDGSLDK 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E       ++  P       +N++  V ++++
Sbjct: 112 EIRDWCEDVVYIPTTGC---MNLAATVNVVLY 140


>gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
           prausnitzii A2-165]
 gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
           prausnitzii A2-165]
          Length = 267

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 20/173 (11%)

Query: 9   QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANAD 65
           +   + P ++L    +   N+G V R+        + +  P+ G  S       SSA A 
Sbjct: 109 REKGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAGAA 166

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +   RV +N+ E          T  R ++    V       + L +   +G  + ++ 
Sbjct: 167 ERLPVARV-ANIGE----------TIRRLKDQGVFVYCADMDGVPLRKNNLTG-PIALVL 214

Query: 126 GRERWGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENSIVS 175
           G E  G++     L + ++   +        S N+S A  ++++E        
Sbjct: 215 GSEGSGVSQLVKKLCDGVVRLDMAAQGTGVDSFNVSVAAGIILYEIQSQRAAE 267


>gi|62955359|ref|NP_001017695.1| RNA methyltransferase-like protein 1A [Danio rerio]
 gi|82178059|sp|Q566V3|RML1A_DANRE RecName: Full=RNA methyltransferase-like protein 1A
 gi|62202803|gb|AAH93318.1| RNA methyltransferase like 1 [Danio rerio]
 gi|182890496|gb|AAI64530.1| RNA methyltransferase like 1 [Danio rerio]
          Length = 435

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLM 164
             +    ++ ++  ++ G E  GL+ E + L+       +  P+ P   SLN + A  ++
Sbjct: 352 PQVYHECWAQRSAALVIGGETHGLSVEALRLAEETDGKRLFVPMAPGVESLNSAMAAGIL 411

Query: 165 VWECMENSIVSSEKNVKEQNT 185
           ++E     ++ S+K  +   T
Sbjct: 412 LFEGRRQLLMLSDKLRRRART 432


>gi|325283787|ref|YP_004256328.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
 gi|324315596|gb|ADY26711.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
          Length = 155

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 31/157 (19%)

Query: 12  AKGPV--IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A GP+  ++L +P+   N+G VAR         L L+ P      ++    +      + 
Sbjct: 3   APGPLLHVVLFEPEKAGNVGNVARTCAVLGAA-LHLIRPYGFHLGDREFRRAV--MDYLQ 59

Query: 70  SVRVFSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            V +  +      + A+     ++A +                A   + +    +   ++
Sbjct: 60  GVELHQHDSWTAFQSALPQTARVWAFST--------------HAQQYHTQAGFQRGDYLL 105

Query: 125 FGRERWGLT---NEEIALSNAIISFPVNPLFPSLNIS 158
            G E  GL     E +      +  P      SLN+S
Sbjct: 106 LGPESRGLPAWLREPLP----TLKLPQPGTGRSLNLS 138


>gi|306843106|ref|ZP_07475728.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2]
 gi|306286711|gb|EFM58264.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2]
          Length = 171

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 39/185 (21%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKAR 58
           M P             + L  P +  N G + R  A   F +    L+ P     S++A 
Sbjct: 1   MQPAGFHDTGFPMELRVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRAL 57

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNE 113
             +      ++                      A  R+                 ++L+ 
Sbjct: 58  KRA--GMDYLEQA--------------------ALTRHPDWHCFDAWRKNAGRRLVLLST 95

Query: 114 RIFS-------GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +           +N  ++FGRE  G+       ++  +  P+     SLN++ +V +   
Sbjct: 96  KAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTG 155

Query: 167 ECMEN 171
           E +  
Sbjct: 156 EALRQ 160


>gi|261329707|emb|CBH12689.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 391

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 12/138 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL------- 77
             N+G + R+ +   L ++ L +   G  +   RSS+   + +     V   L       
Sbjct: 186 PANVGAIMRSAFFMGLRRIVLSSDSAGCTAAVCRSSAGFMEYMSVYRAVVPTLTFLENTV 245

Query: 78  --KEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             ++A  D H   IYAT+   R    +  + +E   V    +   +   ++ G E  GL 
Sbjct: 246 AQQKARDDGHLLEIYATSPMPRRGVTT-CSARELPSVSCGPVNKPRRRLLLLGNEGAGLP 304

Query: 134 NEEIALSNAIISFPVNPL 151
           +E + L       P+ P 
Sbjct: 305 SEVMGLCTHTAHIPLAPE 322


>gi|254883838|ref|ZP_05256548.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641488|ref|ZP_07996178.1| rRNA methylase [Bacteroides sp. 3_1_40A]
 gi|254836631|gb|EET16940.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386889|gb|EFV67778.1| rRNA methylase [Bacteroides sp. 3_1_40A]
          Length = 268

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 63/172 (36%), Gaps = 22/172 (12%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++    +  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 110 PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNCRAVRV 166

Query: 61  SANADCVIDSVRVFSNLKEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S  +  ++    +   + + +    F     A T  + +    +L              +
Sbjct: 167 SMGSVFLVPWTWLNGTIGD-LNKFGFRTAAMALTDDSISIDHPIL-------------AA 212

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              + I+ G E  GL  + IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 213 EPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264


>gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 272

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 25/158 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNF--NLTQLRLVNPRDGWPSEKAR--SSSANADCVIDSV 71
           VI++       N+G + R+   F        L+      P E      +++ A  +I+ +
Sbjct: 125 VIVMDQITDPHNVGAIMRSAIAFKAG----ALITTCRHSPQESGVLAKAASGALEIINYI 180

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  NL E + +LH     +                     E   +G+ + ++ G E  G
Sbjct: 181 TV-RNLAETLQELHKAGFIS----------FGLDSEGDHSLETALTGRKIALVLGAEGKG 229

Query: 132 L---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           L   T E +    A+    +     SLN+S A  + ++
Sbjct: 230 LRKKTRETV--C-ALTRLDMPGNIKSLNVSNAATIALY 264


>gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris DX-1]
 gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris DX-1]
          Length = 275

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 15/155 (9%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSV 71
           G V++L       N+G + R+   F +    +V      P      +  ++ A  ++  +
Sbjct: 122 GIVLVLDQITDPHNVGAILRSAAAFAVQ--AIVTTARHSPEATGVLAKSASGALELVP-L 178

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  NL  A+ +L+         R      L  +         +   Q + ++ G E  G
Sbjct: 179 VLVQNLSRALTELN--------ERGFLTVGLDSE--GEDDLAAVALRQPLALVLGAEGKG 228

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           L          +    +     SLN+S A  L ++
Sbjct: 229 LRQLTRQTCTTVARLDMPGEIKSLNVSNAAALALY 263


>gi|260579765|ref|ZP_05847622.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258602117|gb|EEW15437.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 306

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 12/150 (8%)

Query: 26  ENIGMVARAMWNFNLT-QLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
           ENIG + R      L     L       P   ++   S      +   R          D
Sbjct: 164 ENIGSIFRNAA--GLNVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRD 221

Query: 84  LHFIYATTARNRNNFKSVLAP--KEAAIVLNERIF-SGQNVGIIFGRERWGLTNEEIALS 140
           L  +     + R      L P          E     G+ V ++ G E  GLT   +  +
Sbjct: 222 LELL-----QRRGYEVVALTPAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAA 276

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +   S P+     SLN++ A  +  +E + 
Sbjct: 277 DVRASIPMARGTDSLNVATAAAIAFYEAVR 306


>gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
           Nb-255]
 gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
           Nb-255]
          Length = 283

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 15/156 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDS 70
           +G V++L       N+G + R+   F++    +V      P      +  ++ A  ++  
Sbjct: 131 EGIVLVLDQITDPHNVGAIMRSAAAFSVK--AIVTTARHSPEATGVLAKSASGALEIVP- 187

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +  NL  A+A L+        +R      L    A       +   + + ++ G E  
Sbjct: 188 LVLVQNLARALAGLN--------DRGFMTVGLD--SAGSENLAAVPLREPLALVLGAEGK 237

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL        +A+    +     SLN+S A +L ++
Sbjct: 238 GLRQLTRDTCSAVARLDMPGHIKSLNVSNAAVLALY 273


>gi|228474088|ref|ZP_04058829.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274602|gb|EEK13443.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
          Length = 250

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 29/160 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71
           +G ++ L + Q   N+G + R    F +  L L + +     + K   +S  +   +  V
Sbjct: 96  EGLILALDNIQDPGNLGTLIRLCDWFGIETL-LCSEQTVDCYNPKVVQASMGS---LSRV 151

Query: 72  RV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGR 127
            V +  L   +                      P   A +  E +++    ++  I+ G 
Sbjct: 152 EVHYLPLAGFLVTCDL-----------------PVYVATLAGEDLYTTTFPEDCVIVLGN 194

Query: 128 ERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164
           E  G++ E  AL+N  I+ P         SLN++ A  ++
Sbjct: 195 EANGVSPEVAALANGAITIPRFGKRQQAESLNVAMAGAII 234


>gi|212693396|ref|ZP_03301524.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
 gi|212664040|gb|EEB24614.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
          Length = 251

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78
           Q   N+G + R    F +  +          + K   ++  A   +  V+V       L 
Sbjct: 111 QDPGNLGTIIRLADWFGIEHIFCSAGTVDVYNPKTVQATMGA---LARVKVHYCSLPQLI 167

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E++AD+  +Y T                +  ++     S   + I+ G E  G++ E   
Sbjct: 168 ESLADIP-VYGT--------------FLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEK 211

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173
           L N  +  P    +P       SLN++ A  ++  E     +
Sbjct: 212 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 250


>gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 360

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 16/175 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN- 76
           +L   Q   N+G + R+     + ++          +     +SA A  V+D   VFS  
Sbjct: 156 VLERIQDPRNLGALLRSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMD---VFSTD 212

Query: 77  -----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L+    +   +  T          +    E  I         +   ++ G E  G
Sbjct: 213 DLAGFLQAKAREGWLVAGTVG---CPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSG 269

Query: 132 LTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           L+    A    +++  P     P   SLN+S A  +++            +  +E
Sbjct: 270 LSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPVEGKRE 324


>gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
          Length = 259

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 19/153 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         +   +      S K   S   +   +       +LK+   
Sbjct: 119 QNPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHL--ALYEGDLKKWFE 176

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           D+      +Y T          ++ P+                 ++ G E  G++ E + 
Sbjct: 177 DVKQAGYPVYGTQLNPAAKDFRIVTPQ-------------GGFALVMGNEGRGMSEELLK 223

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + A +  P+     SLN++ +  ++++E  + 
Sbjct: 224 QTTANLYIPMRGQAESLNVAVSAGILMFELADA 256


>gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
           5H-3-7-4]
 gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
           5H-3-7-4]
          Length = 244

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 21/152 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N G + R      +  + +        +     +SA A   +   +V  ++K+A+     
Sbjct: 109 NFGAIIRTAECTGVHGIVIQKKGGAPVNGDTIKTSAGAVFKVPICKV-DHIKDAMFHLQA 167

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + +  I AT   N   F                +   Q   I+ G E  G+    + L++
Sbjct: 168 SGVKVIAATEKTNDTVF---------------DVSFKQPCAIVMGSEGRGINPSVLKLAD 212

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           A    P+     SLN+S A    ++E +   +
Sbjct: 213 ARAKLPLLGDIESLNVSVACGAFLYEAIRQRL 244


>gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis
           M163/99/10]
 gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
          Length = 265

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 29/168 (17%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 115 SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 173

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 174 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 218

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
                 +   ++ G E  GL +  +         P++  F SLN++ A
Sbjct: 219 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATA 264


>gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           smegmatis str. MC2 155]
 gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           MSMEG_6073
 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 314

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + + +     ++ G E  GL+       +AI+S P+     SLN S A  +++ E     
Sbjct: 253 DELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGPTESLNASVAAGVVLAEIARQR 312


>gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 257

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 11/155 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL + Q   N+G + R      ++ + L        + K   S+  +   +  +    +L
Sbjct: 113 ILDNLQDPGNLGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFL-YVEDL 171

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +  I ++          +     V A         +          + G E  GL +E  
Sbjct: 172 ENTIEEV----------KKQDIKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIA 221

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             ++  +   ++    SLN + A  ++++E     
Sbjct: 222 EKADIWVKIKMHGEVESLNAAIASSILMFEVCRQR 256


>gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
 gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
          Length = 262

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 12/165 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +   +   P ++L D Q   N+G + R      + Q+          S K   ++  A  
Sbjct: 107 EAPQALLQPTLLLDDVQDPGNVGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATMGA-- 164

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  V+V+                T   +     +    +   +   R+ S Q   ++ G
Sbjct: 165 -LARVQVYRYTD-------RTALLTMLKKTEIPVIGTFIDGVPLRTLRLASEQPYILVLG 216

Query: 127 RERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECM 169
            E  G++ E  AL +  I+   PV+    SLN++ A  +++   M
Sbjct: 217 NEGNGISPELSALVSQRITIPSPVDSHCESLNVAVAGAIVMAHLM 261


>gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2083]
 gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 259

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 18/156 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS-SSANADCVIDSVRVF 74
            ++L       N+G + R+   F  +   +   R   P   A + +++ A      +R+ 
Sbjct: 112 AVLLDRVTDPHNVGAILRSAEVFGASA-VIGTHRGSAPETGALAKTASGALERQPYLRI- 169

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            NL E+I  L      +            + L                + + ++ G E  
Sbjct: 170 RNLAESIESLQKMGYLVIGLDGEAEQTIDAYL-----------EGKRDRPIALVMGAEGP 218

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           GL  +     +A++       F SLN+S A  + ++
Sbjct: 219 GLREKTKDTVDALVKVEFAGAFGSLNVSNAAAVALY 254


>gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 316

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 17/165 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +  G ++ L +     N+G V R++  F    + +   R    +  A  +SA     +  
Sbjct: 163 ATPGMIVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPV 222

Query: 71  VR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            +   +   LK+     + +                         +       V I+ G 
Sbjct: 223 AKATNMVRTLKQFQQAGYQVVGL--------------DAGGDHTLDTYDGTTPVVIVVGS 268

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL+       + I+S P+     SLN S A  +++ E     
Sbjct: 269 EGKGLSRLVSETCDTIMSVPMAKWVESLNASVAAGVVLSEFARQR 313


>gi|145594669|ref|YP_001158966.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145304006|gb|ABP54588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 299

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 6/173 (3%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
               ++ +SA   V+    P    NIG + R+   F    + +          K+  ++ 
Sbjct: 108 DRLQRIPHSANMLVMAFDRPTTPGNIGSLIRSADAFGAAGVVITGHAADPYDPKSVRATT 167

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +  VRV S    A+ D    +A + R       ++   E   V            
Sbjct: 168 GSLFTVPVVRVPS--HRAVLD----WADSLRATRIPIEIVGTDEHGEVEITAHDLTGPTI 221

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           I+ G E  GL+       +  +  P+     SLN + A  ++++E       S
Sbjct: 222 IVVGNETRGLSTAWRQSCDRTVRIPITGAASSLNAAAAATVVLYEAARQRTAS 274


>gi|324008438|gb|EGB77657.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 57-2]
          Length = 345

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLSAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 298

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 53/158 (33%), Gaps = 18/158 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           +L   +   N+G + R      +  + +   R    +     +S  A   +   RV    
Sbjct: 153 VLDSIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNLV 212

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +++      +++ T    ++  +                 +     +I G E  G++ 
Sbjct: 213 QTVEQLKERGLWVFGTDMDGKDYRRW---------------DAAGPTALIIGNEGKGISP 257

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 +  ++ P+     SLN S A  L++++   + 
Sbjct: 258 LLKKTVDETLTIPMVGHVQSLNASVAASLLIYQAFSSR 295


>gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
 gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
          Length = 268

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 21/178 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P + N      ++L   Q   N+G + R      +  + L+   D W   K   +SA
Sbjct: 103 PLGPIIPNFL----LVLDHLQDPGNLGTLMRTALAAGVDYVWLLEGADPW-QPKVLRASA 157

Query: 63  NA------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            A         ++   +  NL + +  +  + AT        K  + P         ++ 
Sbjct: 158 GATLALPLKRFLEKKLLLQNL-QILKGMQRV-AT-----RVNKHEVTPFIQPYW---QLN 207

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             +   +  G E  GL     A+    ++ P   L  SLN+  A   ++ E +   + 
Sbjct: 208 WCKPTILFLGNEGSGLDPGLEAVCTDAVTIPHTSLVESLNVGVAAAPLLLERIRQKLT 265


>gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
 gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
          Length = 256

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 19/166 (11%)

Query: 11  SAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +   P  +L+    +   NIG + R         + +   R G  +     +SA A   +
Sbjct: 96  AKGEPPFVLLLDGLEDPHNIGALLRTAEGAGAHGVIIPKRRGGAITSTVAKASAGAVEYV 155

Query: 69  DSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
              RV      + +      +I  +          + AP+               VG+I 
Sbjct: 156 PIARVTNLVQTVGQLKKAGLWIIGSA---------MDAPRPYFRQDFR-----GPVGLIV 201

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  G++       + ++S P+     SLN S A  L+++E +  
Sbjct: 202 GSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMYERVRQ 247


>gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
           micronuciformis F0359]
 gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
           micronuciformis F0359]
          Length = 247

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 15/147 (10%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            N+G + R      +    LV  R   P +E    +SA A   +  VR+ +         
Sbjct: 108 HNLGAIIRTAECAGVHA-ILVPQRHSAPINETVAKTSAGAVEYMPVVRIGN--------- 157

Query: 85  HFIYATTARN-RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                TT +  +     VL            + +   + ++ G E  G++       + +
Sbjct: 158 ---VTTTLKQLKKQGFWVLGADMVGEENYYSLSADMPLVLVIGSEGKGISRLVKDNCDVL 214

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME 170
           +  P+     SLN S A  L+++E   
Sbjct: 215 VRIPMFGRINSLNASVAAALLMYEVAR 241


>gi|260547003|ref|ZP_05822742.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260096053|gb|EEW79930.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
          Length = 242

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 81  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 139

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 140 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 184

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 185 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 235


>gi|70728880|ref|YP_258629.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68343179|gb|AAY90785.1| RNA methyltransferase, putative [Pseudomonas fluorescens Pf-5]
          Length = 155

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 20/152 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G V RA   + +           + + K    +   D V D+ +V  
Sbjct: 8   CIGLYNPKSPENVGSVMRAAGCYGVA--------SVFYTGKRYERA--RDFVTDTKKVHQ 57

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++    I DL  I              +   E A  L E     + +  IFG E   L  
Sbjct: 58  DIPLIGIDDLKKIL-----PLGCIPVAVELVEGARPLPEYTHPDRAL-YIFGPEDGSLDK 111

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E       ++  P       +N++  V ++++
Sbjct: 112 EIRDWCEDVVYIPTTGC---MNLAATVNVVLY 140


>gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
 gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
          Length = 263

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P+ P+ +      ++ L D Q   N G + R    F    +          + KA  SSA
Sbjct: 105 PFEPE-RTDGSSLIVALDDVQDPGNAGTILRTAAWFGADAMICSAGTADRYNAKAVRSSA 163

Query: 63  NADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            +   +    V  +L+ E +           R      +V+A   A     E     +  
Sbjct: 164 GSIYALPHYGV-DSLETELL-----------RLAGRGYAVIASSLAGQDFREFTSWPEKQ 211

Query: 122 GIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164
            ++ G E  G++    AL+  ++  P     P   SLN S +  ++
Sbjct: 212 VLVIGNEANGVSRPVQALAGRLVRIPHIGSKPRVESLNASVSAAIL 257


>gi|255076753|ref|XP_002502046.1| predicted protein [Micromonas sp. RCC299]
 gi|226517311|gb|ACO63304.1| predicted protein [Micromonas sp. RCC299]
          Length = 411

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 29/161 (18%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + + I+FG E  G T E +  ++A +  P+     SLN+S A  L +      ++     
Sbjct: 182 EKLAIVFGTESVGCTREALESADARVYLPLRGFADSLNLSVAAALCI-----QTLFHLCP 236

Query: 179 NVKEQNTPATKGEL-LSFLDYLEI-SLEERGYFRPVEKKKKMLDDLYSIFIRPE------ 230
                 + A + EL   +   L    +  RG  R +   +  L  +    +R E      
Sbjct: 237 EAVGAMSDAERAELREKWFTQLAANRVTTRGQDRDLRDARTKLTRVRKKLLRAETATASG 296

Query: 231 ---------------LMREEVFLLRGIVSTLDKFSRQSSRR 256
                          L REE  L   I   +++  R +++R
Sbjct: 297 GGDPNPNGVGGRVADLEREETQLCDAI-RAMEETRRSAAKR 336


>gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1]
 gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
           2503V10-D]
 gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
           2503V10-D]
          Length = 255

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +     N+G + R     +   + L N      + K + S   +   +   ++   
Sbjct: 114 VILDNLTDPGNVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHL---QIVQT 170

Query: 77  -LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +++ + D            N      +  +    +     +   +G+I G E  G++ +
Sbjct: 171 DIEQVLLDF---------KNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQ 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                +  I  P+     SLN + A  +M++
Sbjct: 222 VQLECDHKIYIPIKGKAESLNAAVAAGIMIY 252


>gi|254480449|ref|ZP_05093696.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
 gi|214039032|gb|EEB79692.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
          Length = 261

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           Y  +L   A   V+ L      +N+GM+ R+          L + +           ++ 
Sbjct: 102 YVEELPGLAPQRVLALDGITNPQNLGMILRSAAA-GHIDAVLWSSKGNAALGPLVIKASA 160

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                  + +  +   A+           R       + + +  A          ++V  
Sbjct: 161 GTLYRAPLVMCDSQVNALR----------RLAQQEVEICSLEANASQTLFEFTPKKHVAY 210

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + G E  G++ + + L++  +S P+N    SLN++    L+ +
Sbjct: 211 VLGNETEGVSKDVVQLADKSLSIPMNNGVESLNVAVTASLIAF 253


>gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 310

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSAN 63
             ++  + P ++L    +   N+G V R+        + +  P+ G  S       SSA 
Sbjct: 148 AAKDKGEAPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAG 205

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A   +   RV +N+ E          T  R +     V       + L     +G  + +
Sbjct: 206 AAERLPVARV-ANIGE----------TIRRLKEQGVFVYCADMDGVSLRRNNLTG-PIAL 253

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSSE 177
           + G E  G++     L + ++   +        S N+S A  ++++E          
Sbjct: 254 VLGSEGSGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRAAQQA 310


>gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
 gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
          Length = 321

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 59/174 (33%), Gaps = 22/174 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++     ++ L       N+G V R+   F    + L   R    +  A  +SA      
Sbjct: 163 ESGRPPLLVALDGVTDPRNLGAVVRSAAAFGAHGVVLPQRRSASMTAVAWRTSAGTA--- 219

Query: 69  DSVRVFSNLKEAIADLHFIYAT--TARNRNNFKSVLAP----KEAAIVLNERIFSGQNVG 122
                        A L    AT  T + R   ++ L       +  + ++    +   + 
Sbjct: 220 -------------ARLPIAVATNLTRQLREWAEAGLMVIGLDADGDVDVDGLDLATGPLV 266

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  GL+       +  +S P+     SLN S A  +++ E      + +
Sbjct: 267 VVVGSEGRGLSRLVRETCDQTVSIPMASNVESLNASVAAGVVLAEVARRRRLDA 320


>gi|189024698|ref|YP_001935466.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|189020270|gb|ACD72992.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
          Length = 228

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 4   YAPQLQN-----SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKA 57
             P L++       K  V++L      +N+G + R    F      L++         KA
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKA 125

Query: 58  RSSSANAD---CVIDSVRVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
              S  A           +  ++  A+  A  + +  T +  R+ +              
Sbjct: 126 IRVSVGAALKVPYFHGGTI-DDINAALAEAGFNLLALTPSAPRSIY-------------- 170

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                 +   ++ G E  GL +  +         P++  F SLN++ A  + +
Sbjct: 171 -EATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL 221


>gi|187478243|ref|YP_786267.1| RNA methyltransferase [Bordetella avium 197N]
 gi|115422829|emb|CAJ49357.1| putative RNA methyltransferase [Bordetella avium 197N]
          Length = 257

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 15/168 (8%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L        ++L   Q   N+G + R      + Q  L        S K   S   A  
Sbjct: 104 SLPERVGTNCVLLDRIQDPGNVGTLLRTCAAAGIRQAFLATGTAAAWSPKVLRSGQGAHF 163

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +D             DLH   A +AR   +    +   + A  L +      ++  +FG
Sbjct: 164 AMDIHEHV--------DLH---ALSARL--DVPLAVTTLDDATSLYDTALP-ASLAWVFG 209

Query: 127 RERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSI 173
            E  G+     A +   +  P +     SLN+  A  + ++E     I
Sbjct: 210 HEGQGVDPALQAQAALRLRIPHDMQAVESLNVGAAAAICLFEQRRQRI 257


>gi|258626473|ref|ZP_05721314.1| predicted rRNA methylase [Vibrio mimicus VM603]
 gi|258581255|gb|EEW06163.1| predicted rRNA methylase [Vibrio mimicus VM603]
          Length = 175

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 23/163 (14%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           VII L +P+   N+G V RA                      A     N      + R  
Sbjct: 7   VIIGLHNPKSPTNVGAVMRAA---GCY--------------SATQVRYNGSRYNRAARFQ 49

Query: 75  SNLKEAIADLHFI--YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           ++ +     +  +     TA    + + V                 +    +FG E   L
Sbjct: 50  TDTQNIQERIDLVEMVDLTAGLDQDVEIVCVELVVGATALPHFEHPEKAIYLFGPEDGSL 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             + +  ++ ++  P +     +N++  V +++++ M  S+ +
Sbjct: 110 PQDVVDKAHHVVYVPTHGC---MNLAATVNVVMYDRMAKSLGA 149


>gi|213029187|ref|ZP_03343634.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 105

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 146 FPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            P+   +PSLN+ QAV++  ++       + E
Sbjct: 4   VPMAADYPSLNLGQAVMVYCYQLAGLMQQTPE 35


>gi|268316849|ref|YP_003290568.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262334383|gb|ACY48180.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 200

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 12/187 (6%)

Query: 3   PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P    L+   + P V++L + +   N+G + R      + +L L          +   ++
Sbjct: 12  PDPETLRRLPRHPIVVVLDNIRSIYNVGSIFRTSDAARIEKLYLTGITGTPEHRQLHKTA 71

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A+  +          E + D   + A + R      + L   +     ++       +
Sbjct: 72  LGAEETVPW--------EYVRDPVPLVA-SLRKAGYTIAALELTDTPTYTHQLPDDIFPL 122

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN--SIVSSEKN 179
            +I G E +G+    I  ++  +  P      SLN++ A  + V++ + +   +    + 
Sbjct: 123 ALIVGHELYGVQPALIERADLALEIPQFGSKQSLNVAVAYGIAVFDLVRHYRRLQGDPRF 182

Query: 180 VKEQNTP 186
                 P
Sbjct: 183 SPAPRQP 189


>gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 250

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R      +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++ + T               + A V      +     ++ G E  G+       
Sbjct: 169 LKKRGYWFFGT---------------DMAGVDYREWNAKGKTVLVIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I+ P+     SLN S A  +++++   + 
Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAYNSR 246


>gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 239

 Score = 46.6 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 21/149 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVRVFS 75
           L       N+G + R+   F    + L+       +EK   +S  +     +++  + + 
Sbjct: 104 LDGTNDPGNLGTMIRSAEAFGFKDVILMPGTADVYNEKTLRASMGSIFRLNILN--KTYD 161

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           ++K+ +   +               +L+     + +         + I  G E  GL+ E
Sbjct: 162 DIKK-LKSCYR--------------ILSADMDGLDIR-NYKKDSKIIIAIGNEANGLSQE 205

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLM 164
              +++  I  P+     SLN + A  ++
Sbjct: 206 MREITDEFIKIPMEGEIESLNAAIAASII 234


>gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
          Length = 325

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 18/165 (10%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                + L       N+G V R++  F    + +   R    +  A  +SA     +   
Sbjct: 171 RPALTVALDGVTDPRNLGAVVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVA 230

Query: 72  R---VFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           R   +   L+E A A L  +    A             +  + L+E   +   + ++ G 
Sbjct: 231 RATNLTRTLREYASAGL-MVVGLAA-------------DGDVSLDEFDLATGPLALVTGS 276

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           E  GL+       +  +S P+     SLN S A  +++ E     
Sbjct: 277 EGKGLSRLVRETCDLTVSIPLAGRVESLNASVATGVVLAEVARRR 321


>gi|308177384|ref|YP_003916790.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744847|emb|CBT75819.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 277

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 106 EAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + AI LNE +I +GQ V +I G E  G+T + +   +  +  P++    SLN+  A  + 
Sbjct: 209 DDAIPLNEVQITAGQKVAMILGNEGRGVTAQALEAVDQTVIIPMHREVDSLNVGAASAIA 268

Query: 165 VWEC 168
            W  
Sbjct: 269 FWHL 272


>gi|254719580|ref|ZP_05181391.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
 gi|306837931|ref|ZP_07470791.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
 gi|306407019|gb|EFM63238.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
          Length = 159

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 39/170 (22%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++A   +      ++    
Sbjct: 4   RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQA-- 56

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFS-------GQNV 121
                             A  R+                 ++L+ +           +N 
Sbjct: 57  ------------------ALTRHPDWHRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQEND 98

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++FGRE  G++      ++  +  P+     SLN++ +V +   E +  
Sbjct: 99  ILLFGRESAGVSEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 148


>gi|146293543|ref|YP_001183967.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32]
 gi|145565233|gb|ABP76168.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32]
 gi|319426843|gb|ADV54917.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens 200]
          Length = 257

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 58/151 (38%), Gaps = 19/151 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G + RA   + +           + + +    +A +  V    +   + K
Sbjct: 44  LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 91

Query: 79  EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A   +     T+   A   +     +     A  L + +        +FG E   +  E
Sbjct: 92  DAGERIPLTGVTSLLAAIPADTQLICVDLVVGATPLPDFVHPV-KAFYVFGPEDGTIGQE 150

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I  ++A++  P       +N++ +V ++++
Sbjct: 151 IIDKADAVVYVPT---VGCMNLAASVNVLLY 178


>gi|238064044|ref|ZP_04608753.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237885855|gb|EEP74683.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 124

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R      S++   E  I+        Q    + G E  GL++      + ++  P+    
Sbjct: 40  RADGIGMSIMGTDERGILDAAEYDFTQPTVTLIGNETTGLSSGWREACDQLVRTPMFGSA 99

Query: 153 PSLNISQAVLLMVWE 167
            SLN + A  +M++E
Sbjct: 100 SSLNAATAATVMLYE 114


>gi|66767332|ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|66572664|gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 300

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 23/158 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVI-----DSVRVFSNLK 78
             N G + R+  +F +  L L      G     AR +   A+ V      D+ +  + L+
Sbjct: 160 PHNFGAILRSSAHFGVAGLLLPAGSTLGLSGTAARVAEGGAEAVPLVQLPDNAQAMAQLR 219

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A     F  A T  +             A  L +R+        + G E  G+  +  +
Sbjct: 220 QA----GFAVAATLVDGGQ-------DVFATALPQRL------VYVMGAESEGMDRQFAS 262

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  +S   + L  SLN++ A  +        ++  +
Sbjct: 263 ACDLQLSIHGSGLVESLNVASATAVFQAAWRARALTGA 300


>gi|261325606|ref|ZP_05964803.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261301586|gb|EEY05083.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
          Length = 171

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++A   +      ++   +
Sbjct: 16  RVALYQPDIPGNTGTILRMVACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQAAL 70

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +      D        A  +N  + ++     A +        +N  ++FGRE  G+ 
Sbjct: 71  TRHPDWNCFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 ++  +  P+     SLN++ +V +   E +  
Sbjct: 123 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 160


>gi|257457024|ref|ZP_05622205.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
 gi|257445733|gb|EEV20795.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
          Length = 295

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 31/158 (19%)

Query: 20  VDPQLGE------------NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           V P                N+G + R    F   +L L          +A+ S+      
Sbjct: 145 VRPFYPGVYVYAEDIRAPFNLGSIFRTAEAFGAEKLLLSEGCVSPEQPRAQRSAMGCTRF 204

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +        L    A L                V A +     +    F  Q + ++ G 
Sbjct: 205 LPW-EYCP-LGSMPAGL---------------PVFALETGGTPITSFPFPKQGI-VLLGS 246

Query: 128 ERWGLTNEEIALSNA-IISFPVNPLFPSLNISQAVLLM 164
           E  GL+ E +  ++A I+S P+  +  SLN++ A  ++
Sbjct: 247 EELGLSAEALKRASAGIVSIPMKGIKASLNVAVAFGIL 284


>gi|158294780|ref|XP_001237715.2| AGAP005789-PA [Anopheles gambiae str. PEST]
 gi|157015725|gb|EAU76501.2| AGAP005789-PA [Anopheles gambiae str. PEST]
          Length = 1402

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 29/168 (17%)

Query: 14   GPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-- 69
            G +++  LV+     N+G +AR    F + QL + N      +++ ++ S  A+  +   
Sbjct: 1246 GLIVVASLVN--RAPNLGGLARTGEIFAIKQLVI-NSLQDIGNKEFQALSMTAEKWLKIG 1302

Query: 70   ---SVRVFSNLKEAIA-DLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
               + RV   L+E        + A  TT                      ++   +   +
Sbjct: 1303 ELKTHRVVEYLREMKEKGYSVVGAEQTTG----------------SKAIHQLQFPKKSVL 1346

Query: 124  IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + G E+ GL  E I   + I   P   +  SLN+     + +WE  + 
Sbjct: 1347 VLGHEKNGLPAEIIRHLDLIGEIPQFGVVRSLNVHVTGAIFMWEYAKQ 1394


>gi|289704520|ref|ZP_06500955.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
           luteus SK58]
 gi|289558778|gb|EFD52034.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
           luteus SK58]
          Length = 298

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 +FG E  GL + E+AL++  ++ P+     SLN+  A  + ++
Sbjct: 239 AAPTAWLFGNEAQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287


>gi|254472132|ref|ZP_05085532.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062]
 gi|211958415|gb|EEA93615.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062]
          Length = 186

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               I G ER  L+ E     + I+  P       LN+  A  L++++        +E++
Sbjct: 97  QAAYILGPERGSLSKEMQERCDYIVKIPTK---FCLNVGVAAALVLYDRYMAHGKYAERS 153

Query: 180 VKEQNT 185
           +     
Sbjct: 154 ITAGAP 159


>gi|300782756|ref|YP_003763047.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
 gi|299792270|gb|ADJ42645.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
          Length = 144

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 92  ARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN 149
           AR R     V+  +  E A+ L +   +      + G E+ G+  E + L ++++  P+ 
Sbjct: 62  ARERAAGTRVVGVELAEEAVRLADLPAARGRTIAVLGHEQTGIPPEVLDLLDSVVEIPMV 121

Query: 150 PLFPSLNISQAVLLMVWEC 168
               SLN++ A  L++++ 
Sbjct: 122 GTGASLNVAVAGSLVLYKL 140


>gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
 gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
          Length = 259

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 19/153 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         +   +      S K   S   +   +       +LK+   
Sbjct: 119 QDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHL--ALYEGDLKKWFE 176

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           D+      +Y T          ++ P+                 ++ G E  G++ E + 
Sbjct: 177 DVKQAGYPVYGTQLNPAAKDFRIVTPQ-------------GGFALVMGNEGRGMSEELLK 223

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + A +  P+     SLN++ +  ++++E  + 
Sbjct: 224 QTTANLYIPMRGQAESLNVAVSAGILMFELADA 256


>gi|195128039|ref|XP_002008474.1| GI11797 [Drosophila mojavensis]
 gi|193920083|gb|EDW18950.1| GI11797 [Drosophila mojavensis]
          Length = 412

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 36/179 (20%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++  + +   N+G + R       +Q+ + +        KA          +    +
Sbjct: 240 PITVVCDNIREPNNLGSIIRTCAAVPCSQVVVTHGCCDPWESKALRGGCGGQFRLP---I 296

Query: 74  FSNL----------KEAIADLHFIYA------TTARNRNNFKSVLAPKEAAIVLNERIFS 117
             ++           E     H   A      T  R                   E   +
Sbjct: 297 HDDVTWEQLPLHIPAEVADTCHVFIAENNPSKTAKRAGRTVDY-----------AELDQT 345

Query: 118 GQNVGIIFGRERWGLTNEEIALS------NAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G +  +I G E  G++++  +           +  P+     SLN++ A+ L+++E  +
Sbjct: 346 GAHNVLIIGGESHGVSDDAYSFMKLVGDRGKCVYIPLAAGIDSLNVASALTLILFELRK 404


>gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 317

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 16/176 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A   +    G  +IL +     N+G V R++  F    + +   R    +  A  +SA  
Sbjct: 154 AEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGT 213

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R  +    ++E   + + +    A   +              L+        V
Sbjct: 214 AARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEHT-------------LDTYKGGKDPV 260

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            I+ G E  G++       + I+S P+     SLN S A   ++ E      V++E
Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVLSEFARQRRVANE 316


>gi|126174955|ref|YP_001051104.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155]
 gi|125998160|gb|ABN62235.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155]
          Length = 254

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 23/179 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G + RA   + +           + + +    +A +  V    +   + K
Sbjct: 49  LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 96

Query: 79  EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A   +     T+   +   +     +     A  L + +        +FG E   +  E
Sbjct: 97  DAGERIPLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            I  ++A++  P       +N++ +V ++++    + +  S +      +  +  EL+ 
Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY----DRLAKSHREAASLASNISGDELIR 207


>gi|324113107|gb|EGC07083.1| SpoU rRNA methylase [Escherichia fergusonii B253]
          Length = 345

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 20/153 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  A-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
             +A    +  T++      K +            +    + + ++ G+E  GL +    
Sbjct: 265 FRLAGYT-VVTTSS---EQGKPLF-----------KTSLPEKMVLVLGQEYEGLPDAARD 309

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++  +          LNIS A  +++ E    
Sbjct: 310 PNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|322390078|ref|ZP_08063613.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
 gi|321143205|gb|EFX38648.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
          Length = 181

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 21/172 (12%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSA 62
             P L +  +G  + L D Q   N+G + R         + L     D +  +  RS   
Sbjct: 25  EQPVLPDQLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSMQG 84

Query: 63  NADCV----IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +   +    +D   +   L+ A      + ATT                A +   ++   
Sbjct: 85  SHFHIPIWKLDREEL---LERATQSHLAVLATTLSE-------------ASIDYRQLPQT 128

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
               ++ G E  G++ E    ++ ++  P+     SLN++ A  ++++   +
Sbjct: 129 DRFILVMGNEGNGISQEMATQADQLVHIPMPGRAESLNVAVAAGILMFSLRK 180


>gi|229106374|ref|NP_754987.2| putative methyltransferase [Escherichia coli CFT073]
 gi|300982304|ref|ZP_07176012.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 45-1]
 gi|300408791|gb|EFJ92329.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 45-1]
 gi|315294515|gb|EFU53863.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 153-1]
          Length = 345

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|255690837|ref|ZP_05414512.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
 gi|260623577|gb|EEX46448.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
          Length = 267

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R+     +  + L        + +A   S  A   I    +  +L + +++L F
Sbjct: 134 NIGAIFRSAAALGMDAVLLRRNSCDPLNRRAVRVSMGAVFCIPWTWMDGSLSD-LSNLGF 192

Query: 87  ---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                A T  + +    +L  +               + I+ G E  GL +E IA ++ +
Sbjct: 193 RTAAMALTDNSVSIDDPILMAE-------------SKLAIVVGSEGDGLAHETIAEADYV 239

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECM 169
           +  P++    SLN++ A  +  W+  
Sbjct: 240 VRIPMSYGVDSLNVAAAAAVAFWQLR 265


>gi|224437650|ref|ZP_03658597.1| hypothetical protein HcinC1_06720 [Helicobacter cinaedi CCUG 18818]
 gi|313144097|ref|ZP_07806290.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
 gi|313129128|gb|EFR46745.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 230

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 28/172 (16%)

Query: 1   MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS-EKAR 58
           + P A  L+   +   + +L +     NIG + R  +   +  + +  P     + E   
Sbjct: 69  IPPQALSLKELKEKDSLLVLCEISDVGNIGSIFRTAYALGVGGIVICLPSLSQKAIEGIV 128

Query: 59  SSSANADCVIDS-----VRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLN 112
             S+ A   ++       +VF  L E + + +F       R                   
Sbjct: 129 RLSSGA--FLNMPYGVFTQVFDVLNE-LKNANFTLVGADMRG-----------------Q 168

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           ERI + Q   +  G E  GL+       + ++S  +   F SLN++ A  ++
Sbjct: 169 ERIENPQKWALFLGSESMGLSARLKHKLDTMLSIKMKHHFDSLNVAVATGIL 220


>gi|145628737|ref|ZP_01784537.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|144979207|gb|EDJ88893.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
          Length = 39

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +  L  ++ R +L + E+ +L G++S ++K
Sbjct: 1   MRKLKRLYYRAKLEKNELNILNGMLSAVEK 30


>gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 326

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 34/180 (18%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +    G V+ L       N+G V R+   F           DG    + RS+  NA    
Sbjct: 169 RAGRPGLVVALDSVTDPHNLGAVMRSASAFG---------ADGVVVPERRSAGVNATVWK 219

Query: 69  DSV--------RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
            S             NL  A+  L     F      R                 + +  F
Sbjct: 220 VSAGAAARVPAARVPNLVAALGKLKTRGYFAVGLDGRGDT-------------AIEDISF 266

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   + ++ G E  GL        +AI S P+     SLN++ A  + +++       S 
Sbjct: 267 ADAPIVLVTGSEGKGLARLTRETCDAIASVPIAAELESLNVAVATGIALYQIDRLRARSQ 326


>gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus]
 gi|123796682|sp|Q99J25|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus]
 gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus]
 gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
 gi|151358036|emb|CAI35310.2| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 320

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 22/162 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N+G V R+     + +  + + R+  P +     +SA A  V+D   VF+ 
Sbjct: 147 VLEGLQDPRNLGAVMRSAHFLGVDR-VITSQRNSCPLTPVVSKASAGAMEVMD---VFAT 202

Query: 77  ------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 L+        +  T          +    +  I         +   ++ G E  
Sbjct: 203 PDLPGFLQAKAQQGWLVVGTVG---CPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGS 259

Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVW 166
           GL+ E  A    +++       P  P   SLN+S A  +++ 
Sbjct: 260 GLSQEVFASCQLLLTILPRRHLP--PGLESLNVSVATGILLH 299


>gi|317406253|gb|EFV86497.1| RNA methyltransferase [Achromobacter xylosoxidans C54]
          Length = 262

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 15/179 (8%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +TP    L  +     ++    Q   N+G + R      + ++ L        S K   S
Sbjct: 98  VTPPPLSLPAAVDENCVLFDRIQDPGNVGTLLRTCAAAGIKRVFLATGTAAAWSPKVLRS 157

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A   +                      +A        ++A                 
Sbjct: 158 GQGAHFALAIHEHVD--------------LSALLPTLGVPLVATALEGAQDLYAGRLPAR 203

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENSIVSSEK 178
              +FG E  G+  E +A +   +  P +     SLN+  A  + ++E    ++  + +
Sbjct: 204 CAWVFGHEGQGVAAELLAAARLKLRIPHDMAAVESLNVGAAAAICLFEQRRQALADAAR 262


>gi|304411867|ref|ZP_07393478.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183]
 gi|307303365|ref|ZP_07583120.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175]
 gi|304349727|gb|EFM14134.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183]
 gi|306913725|gb|EFN44147.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175]
          Length = 249

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 58/151 (38%), Gaps = 19/151 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G + RA   + +           + + +    +A +  V    +   + K
Sbjct: 49  LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 96

Query: 79  EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A   +     T+   +   +     +     A  L + +        +FG E   +  E
Sbjct: 97  DAGERIPLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            I  ++A++  P       +N++ +V ++++
Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY 183


>gi|239917947|ref|YP_002957505.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239839154|gb|ACS30951.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 298

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 +FG E  GL + E+AL++  ++ P+     SLN+  A  + ++
Sbjct: 239 AAPTAWLFGNEAQGLDDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287


>gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
 gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
 gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
 gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
          Length = 265

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 20/148 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 82  ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
               +   +Y T   N   +  V  P               +  +I G E  G+  E +A
Sbjct: 183 KLKENSVPVYGTALENGAPYGEV-TP-------------AGSFALIVGNEGSGVRQEILA 228

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            ++  +  P+     SLN++ A  ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTY 256


>gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 212

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 19/177 (10%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNF--NLTQL-RLV-NPRDGWPSEKARSS 60
            P   ++A    ++L +    +N+G + R+   F    T++  LV       PS    ++
Sbjct: 40  HPDEDSAAPSMWLVLDEVVDPQNLGALLRS-AYFLGGSTKVGILVCAKNSAPPSPTVSAA 98

Query: 61  SANADCVID---SVRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIF 116
           SA A  ++D   +  +   L  A +D   I   +A   R+    +         L E   
Sbjct: 99  SAGALELVDLYSTSNLPRTLAAAESDGFRIVGASASVPRDLNVPLY-------ELQEISE 151

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECME 170
                 ++ G E  GL +         +  P         SLN+S    +++W  ++
Sbjct: 152 MSGPTILVLGSEGHGLRSLVAKSCTEFVKVPGAVDAGGVDSLNVSVTGGILLWHFLK 208


>gi|91792898|ref|YP_562549.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217]
 gi|91714900|gb|ABE54826.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217]
          Length = 200

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 45/174 (25%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--- 65
            N+    +I LV+P+   N+G + RA       +   V+    +   +   ++ + D   
Sbjct: 21  SNAVSSVIIGLVNPKTPVNVGGIMRAA---GCYR---VDSVC-YTGRRYELAAKSGDAQY 73

Query: 66  --CVIDSVRV-----FSNLKE------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
                D+ +        +L +       I  +  +   T          + P        
Sbjct: 74  DVDTKDAAKTIPLTGVESLLDQVPVGAKIICVDLVVGAT-----PLPHFVHP-------- 120

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 ++   IFG E   +    I  ++ ++  P       +N++ +V ++++
Sbjct: 121 ------EHAFYIFGPEDGTIPQVLIDAAHEVVYVPT---VGCMNLAASVNVLLY 165


>gi|270296205|ref|ZP_06202405.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273609|gb|EFA19471.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 265

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  V+I  +VD     NIG + R+     +  + L        + +A   S     ++ 
Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175

Query: 70  SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              +      L E +       A T  + +    VL              +   + I+ G
Sbjct: 176 WTWMDGPLDTLGE-LGFRTAAMALTDNSISIDNPVL-------------KTEPRLAIVMG 221

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            E  GL++E IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 222 TEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264


>gi|217972788|ref|YP_002357539.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS223]
 gi|217497923|gb|ACK46116.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS223]
          Length = 249

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 23/179 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G + RA   + +           + + +    +A +  V    +   + K
Sbjct: 49  LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 96

Query: 79  EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A   +     T+   +   +     +     A  L + +        +FG E   +  E
Sbjct: 97  DAGERIPLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            I  ++A++  P       +N++ +V ++++    + +  S +      +  +  EL+ 
Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY----DRLAKSHREAASLASNISGDELIR 207


>gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 271

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150
           R+ +     + P      L + +   + + + I+ G E  GL    +  ++  +  P+  
Sbjct: 189 RDNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMAR 248

Query: 151 LFPSLNISQAVLLMVWE 167
              SLN++ A  L  +E
Sbjct: 249 GTDSLNVATAAALAFYE 265


>gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 253

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 26/155 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R       + + L        + K   +   +   I    +  NL     
Sbjct: 118 QDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIK--VINDNL----- 170

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV--GIIFGRERWGLTNEE 136
                   +   R+ FK +  P      LNE        GQ+    ++ G E  G++ E 
Sbjct: 171 --------SGWIRH-FKDMKVPV-FGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEI 220

Query: 137 IALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170
           + +++  +  P  N    SLN++ A  ++++   +
Sbjct: 221 LEMTSINLYIPITNAE--SLNVAVAAGILMFALKK 253


>gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
           multipartita DSM 44233]
 gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
           multipartita DSM 44233]
          Length = 326

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 16/158 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81
             N+G + R+   F    + +   R    +  A  +SA     +   R   +   LK+  
Sbjct: 181 PRNLGAIVRSAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTLKDYA 240

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A    I    A             +     +    +   + ++ G E  GL      + +
Sbjct: 241 AQGLMIAGLDA-------------DGTTDTDSFELATSPLVLVVGSEGRGLARLTRTVCD 287

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             +S P+     SLN S A  +++ E      + +   
Sbjct: 288 VTVSIPMARSVESLNASVAAGVVLAEVARRRRLETPTP 325


>gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
 gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
          Length = 265

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +    V  NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLP--VVKGNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G++ E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGSGVSQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|225011630|ref|ZP_03702068.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225004133|gb|EEG42105.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 239

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
               N+G + R    + L+ L   +      + K   +S  +   +       +L   + 
Sbjct: 102 SDPGNLGTLIRICDWYGLSDLICSSNTVDCYNSKVVQASMGSIVRV-QCHYVDDLHSTLI 160

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           +L+             K +         L +  F  +    +FG E  GL+     + N 
Sbjct: 161 NLN-------------KPIYGADLNGQSLYKTDFE-EQASFVFGSESHGLSAAVSKIINH 206

Query: 143 IISFP---VNPLFPSLNISQAVLLMVWECMEN 171
            I+ P         SLN++ A  + + E   +
Sbjct: 207 KITIPNFRSGRGAESLNVAVAGAIFLSEIFRS 238


>gi|163758758|ref|ZP_02165845.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
 gi|162284048|gb|EDQ34332.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
          Length = 289

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 56/173 (32%), Gaps = 23/173 (13%)

Query: 6   PQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P L    +G      V++       +N+G + R    F    + L          KA   
Sbjct: 125 PSLGGFLEGLPDQALVVVACGIANHDNVGGIFRNAGVFGADAVVLDQSCCDPLYRKAIRV 184

Query: 61  SANADCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           S  A   +   R   + + + E ++    +   + R                    R   
Sbjct: 185 SVGAALRVPFCRGGSILALVGELVSHGFEVVGLSPR--------------GAEELSRFQP 230

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           G+   ++ G E  GL  EE+  + A +     P   SLN++    + +W   +
Sbjct: 231 GRRQVLLLGTEGEGLP-EELLNALATLRIEQAPGLDSLNVATTSGIALWHIAK 282


>gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
 gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
          Length = 265

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 20/148 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E   
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            + + +  +Y T               E  +   E   +G +  +I G E  G+  E +A
Sbjct: 183 KLKESNVSVYGTA-------------LENGVPFGEVTPAG-SFALIVGNEGSGVRQEILA 228

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            ++  +  P+     SLN++ A  ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTY 256


>gi|71065108|ref|YP_263835.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71038093|gb|AAZ18401.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
          Length = 268

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 26/173 (15%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           AP L +      +IL D Q   N+G + R      +  +   +      S K   +   A
Sbjct: 110 APSL-SMINEDCLILNDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGA 168

Query: 65  DCVIDSVRVFS--NLKEAIADLHF-IYATTARNRN--NFKSVLAPKEAAIVLNERIFSGQ 119
              ++   ++   +++E +  +   ++AT++          + +P               
Sbjct: 169 QFALN---IYEGLSVQEVLDHVETPLFATSSHTDTVIYQHDLKSP--------------- 210

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I G E  G+  +E+      I+ P      SLN++ A  L ++E +   
Sbjct: 211 -IAWIMGHEGQGVC-DELMQCATPIALPQPNGQESLNVAIAGSLCLYETLRQR 261


>gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
          Length = 268

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 19/153 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         +   +      S K   S   +   +       +LK+   
Sbjct: 128 QDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHL--ALYEGDLKKWFE 185

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           D+      +Y T          ++ P+                 ++ G E  G++ E + 
Sbjct: 186 DVKQAGYPVYGTQLNPAAKDFRIVTPQ-------------GGFALVMGNEGRGMSEELLK 232

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + A +  P+     SLN++ +  ++++E  + 
Sbjct: 233 QTTANLYIPMRGQAESLNVAVSAGILMFELADA 265


>gi|194432143|ref|ZP_03064432.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
 gi|194419672|gb|EDX35752.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
 gi|332088093|gb|EGI93218.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 5216-82]
 gi|332089180|gb|EGI94287.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 155-74]
          Length = 345

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ +  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHIQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|153807708|ref|ZP_01960376.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
 gi|149129317|gb|EDM20531.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
          Length = 268

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 15/145 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA--IADL 84
           NIG + R+     +  + L        + +    S  A   +    +  +L +   +   
Sbjct: 133 NIGAIFRSAAALGIDAVLLTRNSCDPLNRRVVRVSMGAVFFVPWAWMNGSLSDLGKLGFR 192

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
               A T    ++   +  P          + +   + I+ G E  GL+++ I  ++ ++
Sbjct: 193 TAAMALT----DDSIPIDNP---------ALVNESKLAIVMGNEGEGLSHDTITEADYVV 239

Query: 145 SFPVNPLFPSLNISQAVLLMVWECM 169
             P+     SLN++ A  +  W+  
Sbjct: 240 RIPMVHGVDSLNVAAAAAVAFWQLR 264


>gi|331678578|ref|ZP_08379253.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H591]
 gi|331075038|gb|EGI46358.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H591]
          Length = 349

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346


>gi|325496341|gb|EGC94200.1| putative methyltransferase [Escherichia fergusonii ECD227]
          Length = 370

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 231 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 289

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +    + + ++ G+E  GL +     
Sbjct: 290 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPEKMVLVLGQEYEGLPDAARDP 335

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 336 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 367


>gi|332344456|gb|AEE57790.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli UMNK88]
          Length = 345

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|331648328|ref|ZP_08349417.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M605]
 gi|331042877|gb|EGI15018.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M605]
          Length = 349

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346


>gi|331643205|ref|ZP_08344340.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H736]
 gi|332278261|ref|ZP_08390674.1| conserved hypothetical protein [Shigella sp. D9]
 gi|331040003|gb|EGI12223.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H736]
 gi|332100613|gb|EGJ03959.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 349

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346


>gi|313888401|ref|ZP_07822069.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845598|gb|EFR32991.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 248

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 20/148 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+     L  L +++P      + K   SS ++   +    ++   +E + D
Sbjct: 119 PGNLGGIIRSADALGLDGL-IISPESCDLYNPKTVRSSMSSIFRLP---IYFMAREDLVD 174

Query: 84  LHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           L F I AT+  N  + +                       ++ G E  G+++  +  +  
Sbjct: 175 LDFNILATSLENSTSTRDYDF--------------KDKDIVVIGNEAKGVSDFLMTHAKG 220

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            ++ P++    SLN + A  ++++E M+
Sbjct: 221 FLNIPISDKVDSLNANVAASIIIYEMMK 248


>gi|157156261|ref|YP_001463905.1| putative methyltransferase [Escherichia coli E24377A]
 gi|191167962|ref|ZP_03029764.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
 gi|218696209|ref|YP_002403876.1| putative methyltransferase [Escherichia coli 55989]
 gi|300820739|ref|ZP_07100889.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 119-7]
 gi|300927042|ref|ZP_07142794.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 182-1]
 gi|301330317|ref|ZP_07222964.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 78-1]
 gi|307313848|ref|ZP_07593464.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
 gi|309794365|ref|ZP_07688788.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 145-7]
 gi|331669332|ref|ZP_08370180.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA271]
 gi|157078291|gb|ABV17999.1| RNA methyltransferase, TrmH family [Escherichia coli E24377A]
 gi|190901969|gb|EDV61716.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
 gi|218352941|emb|CAU98740.1| putative methyltransferase [Escherichia coli 55989]
 gi|300416926|gb|EFK00237.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 182-1]
 gi|300526492|gb|EFK47561.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 119-7]
 gi|300843651|gb|EFK71411.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 78-1]
 gi|306906349|gb|EFN36864.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
 gi|308121821|gb|EFO59083.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 145-7]
 gi|315061900|gb|ADT76227.1| predicted methyltransferase [Escherichia coli W]
 gi|323377519|gb|ADX49787.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli KO11]
 gi|324118209|gb|EGC12105.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|331064526|gb|EGI36437.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA271]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|160892176|ref|ZP_02073179.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
 gi|156858654|gb|EDO52085.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
          Length = 265

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  V+I  +VD     NIG + R+     +  + L        + +A   S     ++ 
Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175

Query: 70  SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              +      L E +       A T  + +    VL              +   + I+ G
Sbjct: 176 WTWMDGPLDTLGE-LGFRTAAMALTDNSISIDNPVL-------------KTEPRLAIVMG 221

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            E  GL++E IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 222 TEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264


>gi|145640332|ref|ZP_01795916.1| hypothetical protein CGSHiR3021_09745 [Haemophilus influenzae
           R3021]
 gi|145274918|gb|EDK14780.1| hypothetical protein CGSHiR3021_09745 [Haemophilus influenzae
           22.4-21]
          Length = 39

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 219 LDDLYSIFIRPELMREEVFLLRGIVSTLDK 248
           +  L  ++ R +L + E+ +L G++S ++K
Sbjct: 1   MRKLKRLYYRAKLEKNELNILNGMLSAVEK 30


>gi|110642743|ref|YP_670473.1| putative methyltransferase [Escherichia coli 536]
 gi|191174012|ref|ZP_03035529.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
 gi|227887617|ref|ZP_04005422.1| methyltransferase [Escherichia coli 83972]
 gi|300935715|ref|ZP_07150684.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 21-1]
 gi|300974114|ref|ZP_07172464.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 200-1]
 gi|301047220|ref|ZP_07194312.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 185-1]
 gi|306814355|ref|ZP_07448517.1| putative methyltransferase [Escherichia coli NC101]
 gi|110344335|gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           536]
 gi|190905703|gb|EDV65325.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
 gi|227835967|gb|EEJ46433.1| methyltransferase [Escherichia coli 83972]
 gi|281179630|dbj|BAI55960.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|300300897|gb|EFJ57282.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 185-1]
 gi|300308937|gb|EFJ63457.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 200-1]
 gi|300459104|gb|EFK22597.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 21-1]
 gi|305851749|gb|EFM52201.1| putative methyltransferase [Escherichia coli NC101]
 gi|307554600|gb|ADN47375.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli ABU
           83972]
 gi|320196417|gb|EFW71041.1| putative methyltransferase [Escherichia coli WV_060327]
 gi|324014374|gb|EGB83593.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 60-1]
 gi|330912349|gb|EGH40859.1| hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           AA86]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|15832701|ref|NP_311474.1| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|16130506|ref|NP_417076.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|74313144|ref|YP_311563.1| putative methyltransferase [Shigella sonnei Ss046]
 gi|82778009|ref|YP_404358.1| putative methyltransferase [Shigella dysenteriae Sd197]
 gi|89109387|ref|AP_003167.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|168752077|ref|ZP_02777099.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757754|ref|ZP_02782761.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765025|ref|ZP_02790032.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768686|ref|ZP_02793693.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773490|ref|ZP_02798497.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778560|ref|ZP_02803567.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790382|ref|ZP_02815389.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC869]
 gi|168801700|ref|ZP_02826707.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC508]
 gi|170019136|ref|YP_001724090.1| putative methyltransferase [Escherichia coli ATCC 8739]
 gi|170082190|ref|YP_001731510.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683534|ref|YP_001744770.1| putative methyltransferase [Escherichia coli SMS-3-5]
 gi|187730537|ref|YP_001881368.1| putative methyltransferase [Shigella boydii CDC 3083-94]
 gi|188494800|ref|ZP_03002070.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
 gi|193064052|ref|ZP_03045137.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
 gi|193068401|ref|ZP_03049364.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
 gi|194429284|ref|ZP_03061811.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
 gi|194437701|ref|ZP_03069797.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
 gi|195936729|ref|ZP_03082111.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208808899|ref|ZP_03251236.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814513|ref|ZP_03255842.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821234|ref|ZP_03261554.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397290|ref|YP_002272056.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920061|ref|YP_002294145.1| putative methyltransferase [Escherichia coli SE11]
 gi|217327232|ref|ZP_03443315.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555164|ref|YP_002388077.1| putative methyltransferase [Escherichia coli IAI1]
 gi|238901746|ref|YP_002927542.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772519|ref|YP_003035350.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162556|ref|YP_003045664.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|254794532|ref|YP_003079369.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|256017269|ref|ZP_05431134.1| putative methyltransferase [Shigella sp. D9]
 gi|256021732|ref|ZP_05435597.1| putative methyltransferase [Escherichia sp. 4_1_40B]
 gi|260845267|ref|YP_003223045.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260856675|ref|YP_003230566.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|260869267|ref|YP_003235669.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|261222983|ref|ZP_05937264.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259467|ref|ZP_05952000.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283857|ref|YP_003500675.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
 gi|293410997|ref|ZP_06654573.1| RNA methyltransferase [Escherichia coli B354]
 gi|293446936|ref|ZP_06663358.1| methyltransferase [Escherichia coli B088]
 gi|297517286|ref|ZP_06935672.1| putative methyltransferase [Escherichia coli OP50]
 gi|300817642|ref|ZP_07097857.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 107-1]
 gi|300904235|ref|ZP_07122094.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 84-1]
 gi|300920749|ref|ZP_07137155.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 115-1]
 gi|300927708|ref|ZP_07143276.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 187-1]
 gi|300951699|ref|ZP_07165519.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 116-1]
 gi|300958777|ref|ZP_07170890.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 175-1]
 gi|301021932|ref|ZP_07185891.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 196-1]
 gi|301302948|ref|ZP_07209076.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 124-1]
 gi|301648346|ref|ZP_07248086.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 146-1]
 gi|307139219|ref|ZP_07498575.1| putative methyltransferase [Escherichia coli H736]
 gi|309784597|ref|ZP_07679232.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|312973173|ref|ZP_07787345.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|84027943|sp|P0AGJ6|YFIF_ECO57 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
 gi|84027944|sp|P0AGJ5|YFIF_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
 gi|1788935|gb|AAC75634.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362918|dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|73856621|gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81242157|gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675469|dbj|BAA16467.2| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|169754064|gb|ACA76763.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli ATCC 8739]
 gi|169890025|gb|ACB03732.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521252|gb|ACB19430.1| RNA methyltransferase, TrmH family [Escherichia coli SMS-3-5]
 gi|187427529|gb|ACD06803.1| RNA methyltransferase, TrmH family [Shigella boydii CDC 3083-94]
 gi|187770634|gb|EDU34478.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013998|gb|EDU52120.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489999|gb|EDU65102.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
 gi|189003528|gb|EDU72514.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355309|gb|EDU73728.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362321|gb|EDU80740.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365089|gb|EDU83505.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370139|gb|EDU88555.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC869]
 gi|189376184|gb|EDU94600.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC508]
 gi|192929287|gb|EDV82896.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
 gi|192958353|gb|EDV88793.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
 gi|194412692|gb|EDX28987.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
 gi|194423507|gb|EDX39498.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
 gi|208728700|gb|EDZ78301.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735790|gb|EDZ84477.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741357|gb|EDZ89039.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158690|gb|ACI36123.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762748|gb|ACI79686.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762750|gb|ACI79687.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762752|gb|ACI79688.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762754|gb|ACI79689.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762756|gb|ACI79690.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209913320|dbj|BAG78394.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217319599|gb|EEC28024.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           TW14588]
 gi|218361932|emb|CAQ99533.1| putative methyltransferase [Escherichia coli IAI1]
 gi|238862664|gb|ACR64662.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378181|emb|CAQ32956.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323563|gb|ACT28165.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974457|gb|ACT40128.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978624|gb|ACT44294.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|254593932|gb|ACT73293.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|257755324|dbj|BAI26826.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257760414|dbj|BAI31911.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257765623|dbj|BAI37118.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|260448339|gb|ACX38761.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli DH1]
 gi|290763730|gb|ADD57691.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
 gi|291323766|gb|EFE63194.1| methyltransferase [Escherichia coli B088]
 gi|291471465|gb|EFF13949.1| RNA methyltransferase [Escherichia coli B354]
 gi|299881399|gb|EFI89610.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 196-1]
 gi|300314585|gb|EFJ64369.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 175-1]
 gi|300403768|gb|EFJ87306.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 84-1]
 gi|300412320|gb|EFJ95630.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 115-1]
 gi|300449061|gb|EFK12681.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 116-1]
 gi|300464261|gb|EFK27754.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 187-1]
 gi|300529630|gb|EFK50692.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 107-1]
 gi|300841883|gb|EFK69643.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 124-1]
 gi|301073622|gb|EFK88428.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 146-1]
 gi|308927494|gb|EFP72966.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|309702967|emb|CBJ02298.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
 gi|310331768|gb|EFP99003.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|315137205|dbj|BAJ44364.1| rRNA methylase [Escherichia coli DH1]
 gi|315256609|gb|EFU36577.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 85-1]
 gi|315615843|gb|EFU96475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 3431]
 gi|320176115|gb|EFW51182.1| putative methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320188922|gb|EFW63581.1| putative methyltransferase [Escherichia coli O157:H7 str. EC1212]
 gi|320200145|gb|EFW74734.1| putative methyltransferase [Escherichia coli EC4100B]
 gi|320640830|gb|EFX10324.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101]
 gi|320646176|gb|EFX15116.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
 gi|320651471|gb|EFX19867.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
 gi|320657073|gb|EFX24892.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662738|gb|EFX30077.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
 gi|323159154|gb|EFZ45145.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli E128010]
 gi|323167780|gb|EFZ53475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella sonnei 53G]
 gi|323173100|gb|EFZ58731.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli LT-68]
 gi|323177288|gb|EFZ62876.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1180]
 gi|323184539|gb|EFZ69913.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1357]
 gi|323936321|gb|EGB32612.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323941156|gb|EGB37341.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944581|gb|EGB40650.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323961196|gb|EGB56809.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971092|gb|EGB66339.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|324020040|gb|EGB89259.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 117-3]
 gi|326340387|gb|EGD64191.1| putative methyltransferase [Escherichia coli O157:H7 str. 1125]
 gi|326345070|gb|EGD68814.1| putative methyltransferase [Escherichia coli O157:H7 str. 1044]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|317480785|ref|ZP_07939871.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|316903126|gb|EFV24994.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 265

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 12  AKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           A+  V+I  +VD     NIG + R+     +  + L        + +A   S     ++ 
Sbjct: 119 ARRIVVIDGVVDTT---NIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVP 175

Query: 70  SVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
              +      L E +       A T  + +    VL              +   + I+ G
Sbjct: 176 WTWMDGPLDTLGE-LGFRTAAMALTDNSISIDNPVL-------------KTEPRLAIVMG 221

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            E  GL++E IA ++ ++  P+     SLN++ A  +  W+  
Sbjct: 222 TEGDGLSHEAIAGADYVVRIPMAHGVDSLNVAAAAAVAFWQLR 264


>gi|300781739|ref|ZP_07091593.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
 gi|300533446|gb|EFK54507.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
          Length = 273

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNAIISFP 147
           R +      L P   A+ L E +        + V ++ G E  GLT   +  ++     P
Sbjct: 188 REQGFRLVSLTPDSRAVHLAEALVDDTGHPYKKVALLVGGEGPGLTEHAMRATDVRARIP 247

Query: 148 VNPLFPSLNISQAVLLMVWECMEN 171
           +     SLN++ +  +  +E   +
Sbjct: 248 MAAGTDSLNVATSAAIAFYERQRS 271


>gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 279

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 26/162 (16%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKARSSSANADCVID 69
            AK  V++L      +N+G + R    F      L++         KA   S  A     
Sbjct: 130 PAKSLVVVLCGISNHDNVGSIFRNAAAFE-ADCVLMDETCCDPLYRKAIRVSVGATL--- 185

Query: 70  SVRVFS--NLKE---AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            V  F   N+ E   A+ D +F + A +  +               +            +
Sbjct: 186 KVPYFHGGNIDEIIAALGDANFNLLALSPSS--------------TLSIYDAAKQDRHAL 231

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + G E  GL    +         P++  F SLN++ A  + +
Sbjct: 232 LLGTEGEGLPPRLLGKLQTA-RIPMSTAFDSLNVATASGIAL 272


>gi|227494335|ref|ZP_03924651.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226832069|gb|EEH64452.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 210

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 25/150 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLV-----NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           NIG + R      +  + +V     N R    +++      + D          + + A+
Sbjct: 78  NIGSIVRTANAMGVRHVHIVGRRRWNRRGAMVTDRYMQVHHHPD--------VESFQAAM 129

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            +                  +   E ++ L E +    N  ++ G E  GL+ E  A+S 
Sbjct: 130 QEA-----------GMRIVGVDNIERSVPLEETVLP-LNCVMVMGEESTGLSPEMAAISE 177

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            I+         S+N+  A  + +W  +  
Sbjct: 178 EIVHITQYGSTRSMNVGHAAAISMWAWVLQ 207


>gi|222034286|emb|CAP77027.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Escherichia coli
           LF82]
 gi|312947153|gb|ADR27980.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|206602427|gb|EDZ38908.1| Putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 192

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 28/163 (17%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
              P++ +   Q   N+G + R      +  + L   R    S     +S+ A   I  +
Sbjct: 43  LPSPLVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTIPLI 102

Query: 72  RVFSNLKEAI-----ADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           RV  NL +++                 +   R+ F + L                    I
Sbjct: 103 RV-GNLSQSLIYLRKQGYGVASLALGGSTAYRDPFPAPLV-------------------I 142

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + G E  G++   +  S+  +S P+     SLN+S A+ + ++
Sbjct: 143 VVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVALGIFLY 185


>gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 240

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 24/162 (14%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           Q      ++IL       N G + R      +  + +   R    +     +S  A   +
Sbjct: 96  QQEDNPLLLILDGLTDPHNFGSILRTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHV 155

Query: 69  DSVRVFSNLKEAIADLH----FIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              RV +NL +A+  L     +++ T  T      +                  +   + 
Sbjct: 156 PIARV-TNLSQALDQLKANGFWVFGTDVTGTPSYKW-----------------NTSGKLA 197

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +I G E  G++       + +I+ P+     SLN S A  ++
Sbjct: 198 LIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAIL 239


>gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 239

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +++     V+IL + +   N G + R    F +  +          ++    +S  A   
Sbjct: 84  IKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINY 143

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I  + V +NL   I +L     ++YAT+                     E++        
Sbjct: 144 IYMIEV-NNLSNTIKNLQDEGFWVYATS--------------LLKSQSYEKVDYANKTVF 188

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           I G E  G++   +  ++  I   +     SLN+  A  +++
Sbjct: 189 IVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230


>gi|30063982|ref|NP_838153.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|30042238|gb|AAP17963.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T]
 gi|281601993|gb|ADA74977.1| putative rRNA methylase [Shigella flexneri 2002017]
 gi|313648260|gb|EFS12704.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2a str. 2457T]
 gi|332753991|gb|EGJ84365.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 4343-70]
 gi|332755829|gb|EGJ86187.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2747-71]
 gi|332761975|gb|EGJ92248.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-671]
 gi|332766583|gb|EGJ96788.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2930-71]
 gi|333000441|gb|EGK20023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri VA-6]
 gi|333000847|gb|EGK20419.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-218]
 gi|333001674|gb|EGK21241.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-272]
 gi|333015950|gb|EGK35285.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-227]
 gi|333016824|gb|EGK36150.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-304]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|21674700|ref|NP_662765.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 263

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 20/162 (12%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
             SA+  V+ L D Q   N+G + R    F   +  +       P       S+      
Sbjct: 110 PASARSFVVALDDVQDPGNVGTIIRTAAWFG-AEAVICGRGTADPYNAKSVRSSAGSIFA 168

Query: 69  DSVRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++    +L + +  L    F  A +A +  +++                       ++ 
Sbjct: 169 LAIDTTPDLAKTLRRLQADGFTVAASALDGQDYRFF-------------AEWPARRVLVI 215

Query: 126 GRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164
           G E  G++ E +AL++  +  P     P   SLN S +  ++
Sbjct: 216 GNEANGISAEILALADRRLLIPPAGARPAVESLNASVSAGIL 257


>gi|332141307|ref|YP_004427045.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551329|gb|AEA98047.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 182

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 30/160 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA--NADCVIDS 70
           +   I LV+P+   N+  + RA   + +           + + +    +   NAD     
Sbjct: 19  QKISIGLVNPKNPVNVASILRAAGCYGVA--------SVFYTGQRYRFAKDFNADTKAFH 70

Query: 71  VRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             +      NL++ I     + A            +   E A  L       +N   + G
Sbjct: 71  KTIPTIGVDNLRDVIPQHASVVA------------VELVEGATPLP-SFEHPENAFYLLG 117

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E   +  + ++  + ++  P    +  +N++    ++++
Sbjct: 118 PEDGSIGEDILSWCDHVVYVPT---YSCMNLAATANVLLY 154


>gi|300789799|ref|YP_003770090.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
 gi|299799313|gb|ADJ49688.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
          Length = 253

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 26/182 (14%)

Query: 1   MTPYAPQLQNS---AKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS- 54
           + P    L  +    + P  +L+        N+GM+ R      L    +V PR G  + 
Sbjct: 87  LAPRMRALSAALADRRPPSRVLLLDGITTPANVGMILRTATAAGLDG-VIV-PRRGVAAL 144

Query: 55  EKARSSSANADCVIDSVRVFSNLKEA---IADLHF-IYATTARNRNNFKSVLAPKEAAIV 110
           +     ++        V    + +EA   +A+  F +YA  A  R     V  P      
Sbjct: 145 DPLVVKASAGVAFRAPVLRCGSAREAAEMLAEAGFGLYALGASARTTVFDVDLP------ 198

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                   Q    + G E  G+  E   L    +S P+     SLN+S A  ++ +E + 
Sbjct: 199 --------QRAAFVLGGETAGVGAEVGELVTEWLSIPMPGDVESLNVSAAAAVLSFELVR 250

Query: 171 NS 172
            +
Sbjct: 251 RA 252


>gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 268

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIF--SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150
           R+ +     + P      L + +   + + + I+ G E  GL    +  ++  +  P+  
Sbjct: 186 RDNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMAR 245

Query: 151 LFPSLNISQAVLLMVWE 167
              SLN++ A  L  +E
Sbjct: 246 GTDSLNVATAAALAFYE 262


>gi|320182094|gb|EFW56998.1| putative methyltransferase [Shigella boydii ATCC 9905]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ +  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHIQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
          Length = 251

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 20/154 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 105 ILDELADPHNLGSILRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARV-TNL 163

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +   +L     +++ T                           G  V ++ G E  G++
Sbjct: 164 VQVAKELQKRGVWLFGT--------------DMQGTDCRRWDAKGA-VALVIGNEGKGIS 208

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                  + +++ P+     SLN S A  L++++
Sbjct: 209 PLLKKTCDEMLTIPMIGHVQSLNASVAASLLIYQ 242


>gi|114706914|ref|ZP_01439813.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
 gi|114537464|gb|EAU40589.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
          Length = 282

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 12/152 (7%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           GPV+I +     +NIG + R    F +  + L +        KA   S       D  R 
Sbjct: 131 GPVLIAIGIANHDNIGALFRNARAFGVGGVLLDDTSCNPLYRKALRVSVGTVLTADWCRS 190

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             N  + IA         A         L PK       + +   + + ++ G E  GL 
Sbjct: 191 -GNADDLIA--------AAEAAGYRPIALTPK--GEHSLDDLEPTERLALVVGAEGPGLP 239

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              +   + +    +     SLN++    +++
Sbjct: 240 ENILDRLHGL-RIAMESDVDSLNVATTAAIVL 270


>gi|331674030|ref|ZP_08374793.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA280]
 gi|331069303|gb|EGI40695.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA280]
          Length = 349

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346


>gi|301024868|ref|ZP_07188505.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 69-1]
 gi|300396399|gb|EFJ79937.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 69-1]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
 gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
          Length = 434

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 24/162 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL---KEAI 81
            +N+G V R+ + F +  + L +         A  +SA A  +ID  +  S+L       
Sbjct: 270 PQNMGSVLRSAFFFGIDGVILPDHSTAKLGPIAFKASAGALDLIDLYQTESSLKFIDSVR 329

Query: 82  ADLHFIYATTARNRNNF------KSVLAPKEAAIVLNER-----IFSGQNVGIIFGRERW 130
            +   + +T+ +           K      + A    +      I     V ++ G E  
Sbjct: 330 KNGWHVISTSGKPDEVSNDELADKHPKTISQLASKFIDLEDLQIILRKSPVMLVIGSEGE 389

Query: 131 GLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMV 165
           G+       S+ ++  P    +        SLN+  A  +++
Sbjct: 390 GVRTNVKLRSDYLVGIP---KYRSDDVIVDSLNVGVATGVIL 428


>gi|84496489|ref|ZP_00995343.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84383257|gb|EAP99138.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 269

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS-----NLKEA 80
           N+G V R+     +    LV PR   P   +A   S      +   R+       NL   
Sbjct: 133 NVGAVFRSAAALGM-DAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPRGINL--- 188

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF-SGQNVGIIFGRERWGLTNEEIAL 139
           + D  F  A  A + +           A+ L+E      + + ++ G E  GL+   +  
Sbjct: 189 LRDSGFTVAALALSDD-----------AVGLDELAANPPERLALVLGTEGDGLSRRTVEG 237

Query: 140 SNAIISFPVNPLFPSLNISQ 159
           ++ ++  P+     SLN++ 
Sbjct: 238 ADVVVKIPMAGGVDSLNVAA 257


>gi|322697910|gb|EFY89685.1| RNA methyltransferase, putative [Metarhizium acridum CQMa 102]
          Length = 556

 Score = 46.2 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 17/199 (8%)

Query: 2   TPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
             + P+  NSA  P+++L  +     N+G + R      +  + + +      +     S
Sbjct: 348 NTFVPKANNSATKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKS 407

Query: 61  SANADCVIDSVRVF--SNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNER 114
           +A A    + V +F   +  E +          YA  A   +    +   K  +    E+
Sbjct: 408 AAGAA---EEVTIFTVDSPVEFLKGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDYVEQ 464

Query: 115 IF--SGQNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECM 169
                     ++ G E  GL  +    ++  +S P         SLN+S A  L+    +
Sbjct: 465 TSPLDQHPCVLVLGNEGHGLPRQVKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCHTFV 524

Query: 170 ENSIVSSEK--NVKEQNTP 186
           + S  +  +   + E + P
Sbjct: 525 KGSARNKNRVNQIPEADPP 543


>gi|215487924|ref|YP_002330355.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|218690697|ref|YP_002398909.1| putative methyltransferase [Escherichia coli ED1a]
 gi|218701096|ref|YP_002408725.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218706086|ref|YP_002413605.1| putative methyltransferase [Escherichia coli UMN026]
 gi|293406024|ref|ZP_06650016.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298381824|ref|ZP_06991423.1| methyltransferase [Escherichia coli FVEC1302]
 gi|300895649|ref|ZP_07114249.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 198-1]
 gi|312965497|ref|ZP_07779729.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|331684231|ref|ZP_08384827.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H299]
 gi|215265996|emb|CAS10406.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218371082|emb|CAR18911.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218428261|emb|CAR09180.2| putative methyltransferase [Escherichia coli ED1a]
 gi|218433183|emb|CAR14081.1| putative methyltransferase [Escherichia coli UMN026]
 gi|284922533|emb|CBG35620.1| putative RNA methyltransferase [Escherichia coli 042]
 gi|291428232|gb|EFF01259.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298279266|gb|EFI20780.1| methyltransferase [Escherichia coli FVEC1302]
 gi|300360409|gb|EFJ76279.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 198-1]
 gi|312289917|gb|EFR17805.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|323188304|gb|EFZ73596.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli RN587/1]
 gi|331079183|gb|EGI50385.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H299]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20]
 gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20]
          Length = 253

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL   +   N+G + R      +  + +   R    +      S  A   +   RV    
Sbjct: 108 ILDGIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLV 167

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           + + E      +++ T     +  +                 +     ++ G E  G++ 
Sbjct: 168 NVVGELKDRGVWVFGTDMSGDDYRRW---------------DAKGPTALVIGNEGKGISP 212

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 +++++ P+     SLN S A  L++++
Sbjct: 213 LLKKKVDSMLTIPMVGHVQSLNASVAASLLIYQ 245


>gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 261

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +      G E  GLT++        I  P+     SLN + A  L+V+E     
Sbjct: 204 KGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNAAMASGLLVYEARRQR 257


>gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
 gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
 gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2]
          Length = 257

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +      G E  GLT++        I  P+     SLN + A  L+V+E     
Sbjct: 200 KGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLNAAMASGLLVYEARRQR 253


>gi|154495145|ref|ZP_02034150.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
           43184]
 gi|154085695|gb|EDN84740.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVI 68
           + +   V+ L   Q   N+G + R    F +  +   +P      S K   ++  A   +
Sbjct: 98  DPSTSLVLALDGIQDPGNLGTIIRLADWFGIEHIV-CSPDTADVFSPKTVQATMGA---L 153

Query: 69  DSVRVFSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             V+V    L++ +       A  AR       +         +  +  S   + I+ G 
Sbjct: 154 AHVKVHYTELEDYLK------AQAARQ----IPLFGTFLDGENMYTKELSANGI-IVMGN 202

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIVSSE 177
           E  G+  +   L N  +  P    FP       SLN++ A  ++  E       +++
Sbjct: 203 EGNGIRPQIEKLINQKLYIPS---FPPERETSESLNVAIATAVICAEFRRCQGNAAQ 256


>gi|78189691|ref|YP_380029.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
 gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
          Length = 265

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 21/170 (12%)

Query: 4   YAPQLQNSAKGP-----VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
             P  Q +   P     V+ L D Q   N+G + R    F +  L          + K  
Sbjct: 101 RQPTFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYNPKVV 160

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIY-ATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            S A +   +   R            + +    +   +  +  V +  E   +     F 
Sbjct: 161 RSCAGSLFALPHYR-----------CNLMVHELSRWQQQGYSIVCSSLEGRDICGGEAF- 208

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164
           G    I+ G E  G++    A ++ ++  P     P   SLN S A  ++
Sbjct: 209 GDKTVIVIGNEANGVSQAVQASADMLVRIPHAGSKPAVESLNASIAAAIL 258


>gi|331654044|ref|ZP_08355045.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M718]
 gi|331048893|gb|EGI20969.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M718]
          Length = 349

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 210 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 268

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 269 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 314

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 315 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 346


>gi|312891737|ref|ZP_07751246.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
 gi|311295820|gb|EFQ72980.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
          Length = 224

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L   Q   N+G + R    F +  +          +  A            + +V   
Sbjct: 83  IVLDGIQDPGNLGTIIRTADWFGIQNII-----CSEDTVDAY-----------NAKVVQA 126

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS---GQNVGIIFGRERWGLT 133
              ++A +H  Y   A+   N K    P   A++  E I+    G    I+ G E  G+ 
Sbjct: 127 TMGSLARIHVHYVNLAQLITNTK---LPVFGALLDGENIYQTNFGSQGLIVLGNEGNGIR 183

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            E  AL    ++ P+     SLN++ A  +   E      V
Sbjct: 184 PEIQALIQKPVTIPLLGKAESLNVAIANAVFCSEISRGKFV 224


>gi|115649674|ref|XP_782724.2| PREDICTED: similar to RNA methyltransferase like 1 variant
           [Strongylocentrotus purpuratus]
 gi|115931637|ref|XP_001192402.1| PREDICTED: similar to RNA methyltransferase like 1 variant
           [Strongylocentrotus purpuratus]
          Length = 449

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 119 QNVGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +  ++ G E  GL+ E   L        I  P++    SLN + A  ++++E     + 
Sbjct: 385 GDYALVIGGETEGLSREAKELCTETGGRRIFIPMSMGIDSLNAAMATSVILFEAKRQLLT 444

Query: 175 SSEKN 179
           +++ +
Sbjct: 445 ANKSH 449


>gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
 gi|60593967|pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
          Length = 287

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 6/127 (4%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P    NIG + R+        L +          K+  SS  +   + +VRV  +  E 
Sbjct: 133 RPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRV-PSPGEV 191

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                ++ A   R       ++   E            Q   ++ G E  GL+N    L 
Sbjct: 192 ---XDWVEA--RRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLC 246

Query: 141 NAIISFP 147
           +  +S P
Sbjct: 247 DYTVSIP 253


>gi|330836124|ref|YP_004410765.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748027|gb|AEC01383.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 265

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 16/159 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL   +   NIG + R   +F + ++ L+         +A+ ++      +D   +  
Sbjct: 120 TVILDRIRSPYNIGALFRTADSFGVKEIILIEGCASPLHTRAKRTARGCTETVDWSMMD- 178

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             +E++ DL           +  K  +   E   V            ++ G E +G++  
Sbjct: 179 --EESVIDLI----------HRRKVPVFALETGGVNIAGFPFPPEGIMVVGNEEFGVSPA 226

Query: 136 EIALSN---AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +         +S        SLN+S A  +++      
Sbjct: 227 LLRACQESAGRLSLLQAGTKASLNVSVAFGIVMHAWFTA 265


>gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
 gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
          Length = 246

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 23/152 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID------SVRVFSN 76
           Q   N+G + R       T + + +      S K   S   +   +          +   
Sbjct: 111 QDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQALLKET 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            + AI     + ATT       K  +  +E   +        +N  ++ G E  G++   
Sbjct: 171 KEAAIP----VLATT-----LSKDSVDYRELPPI--------ENFVLVMGNEGQGISPLM 213

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +  ++ ++   +     SLN++ A  ++++  
Sbjct: 214 VESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040]
 gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040]
          Length = 262

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 25/164 (15%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P +IL+       N+G + R+      +   ++  R    + +  + +  A   ++ 
Sbjct: 110 AEVPRVILLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 166

Query: 71  -----VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVG 122
                +R  S+   A+  + ++              L     A    E   +G   + + 
Sbjct: 167 QPYLRMRNLSDTIVALQQMGYLV-------------LGLDGEAEETIEEAVAGRTKEPIA 213

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  GL  +     + ++       F SLN+S A  L ++
Sbjct: 214 LVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLY 257


>gi|329946902|ref|ZP_08294314.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526713|gb|EGF53726.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 286

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 22/142 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA--DCVIDSVRVFSNLKEAIAD 83
           N+G   R+     +    LV PR   P   ++   S       +   +  +  + E  A 
Sbjct: 146 NVGAAFRSAAALGI-DAVLVTPRCADPLYRRSVRVSMGTVFQVLWTRIERWPAMDELHAQ 204

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGLTNEEI 137
              + A            LA  E ++ L+E   S      G  V ++ G+E  GL++  I
Sbjct: 205 GFTVAA------------LALSENSVALDELAASPVCTDPGSQVAVVLGKEGDGLSHRTI 252

Query: 138 ALSNAIISFPVNPLFPSLNISQ 159
           A ++ ++  P+     SLN++ 
Sbjct: 253 AEADEVVRIPMAGAVDSLNVAA 274


>gi|256587794|gb|ACU98926.1| rRNA methylase family protein [Propionibacterium jensenii]
          Length = 169

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 15/147 (10%)

Query: 27  NIGMVARAMWNFNLT-QLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---FSNLKEAI 81
           N+G + R      L     L+ PR   P   +A  +S      +   R+      L   +
Sbjct: 29  NVGAIIRCAA--GLGWDGVLLAPRAADPLYRRAIKTSMGTVFALPWARLSDWCQGLGH-L 85

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            +  F  A  A + ++    ++  E A  L  R    + V ++ G E  GL++  +  ++
Sbjct: 86  KEHGFTIAAMALSDDS----VSLDEFAAQLRSRP---RKVALLMGTEGAGLSSHWVNQAD 138

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++  P++    SLN++ A  +  +  
Sbjct: 139 VVVRIPMHHGVDSLNVAAAAAVACYAL 165


>gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
 gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
          Length = 252

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         S+ A  ++
Sbjct: 117 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQA--LL 173

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +         A +  + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 174 EKAKK--------AGIS-VLATT-----LSKDSVDYRELPPI--------ENFVLVMGNE 211

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G+++     ++ ++   +     SLN++ A  ++++  
Sbjct: 212 GQGISSLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 251


>gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
 gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
          Length = 265

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 11/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++ L   +   NIG + R       + +          + K   S+  +   +       
Sbjct: 114 IVALDGIKDPGNIGTIIRTADAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLP------ 167

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                I  +         ++   K V+     A            V ++FG E  G++ E
Sbjct: 168 ----VIEGVDLPVVLHELSQKRAKIVVT-HLGAEKSYFDADLTGPVVLVFGSEAEGVSPE 222

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +S  ++  P+     SLN++ A  ++++E +   
Sbjct: 223 ILKISTEVVKIPMPGKAESLNVAVAGGIVLFEAVRQR 259


>gi|301167940|emb|CBW27526.1| tRNA (guanosine-2'-O-)-methyltransferase [Bacteriovorax marinus SJ]
          Length = 249

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L     G  +IL       N+  ++R   NF + +L ++  +   P +    +S  A   
Sbjct: 54  LDQRISGLSVILESLGDLGNLQAISRTCDNFGVQKLEIIETKG--PMKWTNRTSQGAHKW 111

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   + +        D    +    ++R       A  + AI   E  F+ +   ++ G 
Sbjct: 112 VTMQKWYET-----KDCLQYF----KDRGVQIVSTAFSDKAIPYTEVDFT-KPTALLMGN 161

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           E +G++     +S+     P      SLN+S A  ++
Sbjct: 162 ESFGISEVAREMSDVECIIPSYGYSQSLNVSVAAAIV 198


>gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
           racemifer DSM 44963]
 gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
           racemifer DSM 44963]
          Length = 249

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 21/136 (15%)

Query: 57  ARSSSANADCVID------SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV 110
           A ++  +   + +      +  V      A   +       AR  N  +++   K+  I 
Sbjct: 118 AEAAGVHGVIIPEHRAAEVNATVVKTSAGATEHIMI-----ARETNLTRTIDYLKQQNIW 172

Query: 111 LNERIFSG----------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           +      G            + ++ G E  G+        + +I  P++    SLN + A
Sbjct: 173 IVGLAGEGDTLYTQANLTGALAVVVGNEGKGMGRLVREHCDVLIKLPMHGYINSLNAAVA 232

Query: 161 VLLMVWECMENSIVSS 176
             + ++E +    ++S
Sbjct: 233 GSITLYEALRQRSLAS 248


>gi|218559502|ref|YP_002392415.1| methyltransferase [Escherichia coli S88]
 gi|218366271|emb|CAR04018.1| putative methyltransferase [Escherichia coli S88]
 gi|294490617|gb|ADE89373.1| RNA methyltransferase, TrmH family [Escherichia coli IHE3034]
 gi|307625870|gb|ADN70174.1| putative methyltransferase [Escherichia coli UM146]
 gi|315287997|gb|EFU47399.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 110-3]
 gi|323949235|gb|EGB45126.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323955817|gb|EGB51575.1| SpoU rRNA methylase [Escherichia coli H263]
          Length = 345

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++      +  +    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEYVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|260174886|ref|ZP_05761298.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|315923129|ref|ZP_07919369.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697004|gb|EFS33839.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 254

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  +          + K   ++      I  V+V      ++ 
Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D       T         +         + E+  S   + I+ G E  G+  E   L N 
Sbjct: 167 DFIRSLGDT--------PIFGTFLDGKNMYEQPLSANGL-IVMGNEGNGIGKEVATLINR 217

Query: 143 IISFPVNPLFP----SLNISQAVLLMVWECMENS 172
            +  P  P       SLN++ A  ++  E    +
Sbjct: 218 KLYIPNYPEGQETSESLNVAIATAVICAEFRRQA 251


>gi|146096859|ref|XP_001467955.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072321|emb|CAM71027.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 2045

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 13/178 (7%)

Query: 4    YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            +   L+   +  +++    +   NI  + R    F +  L  V  +  +      +++ +
Sbjct: 1877 HPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLV-VPEKKVFEHPHFVAAARS 1935

Query: 64   ADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNV 121
            A+  I    V   +L   +  L        R R     V+  ++ A  +  E+    +  
Sbjct: 1936 AELWIPWEEVVPKDLPGYLEGL--------RRRGYV--VVGIEQTAASVPLEQFSFPERC 1985

Query: 122  GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             ++ G E  G+    I L +  +  P   L  SLN+  A  + ++E     +++    
Sbjct: 1986 AVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQSHP 2043


>gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
 gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
          Length = 251

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 12/147 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   ++  +   +    V  +L + I 
Sbjct: 114 QDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLP--VVKGDLAQWI- 170

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    AR +     V        V    +    +  I+ G E  G+  + + L+  
Sbjct: 171 ---------ARFKEQGIPVYGTALENAVDYRTVPQSSSFAILVGNEGSGVRPDLLRLTTE 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
            +  P+     SLN++ A  ++++   
Sbjct: 222 NVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|256393456|ref|YP_003115020.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256359682|gb|ACU73179.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 174

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P    N+G + R           L  PR  W  E      A  + +     +        
Sbjct: 36  PMHEANLGTLLRTCDAVGA---CLAVPRLPWVPEAL----ARGNTLRHPACIHWT----- 83

Query: 82  ADLHFIYATTARNRNNFKSV-LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                 + T    R +   V     + A+ L +   +     ++ G ER G+  + +AL 
Sbjct: 84  -GDQLSWLTHQHTRTDTTIVGAELADEALRLADLPPARNRTVLVLGHERDGIPPDAVALL 142

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +  +  P+     SLN++ A  L+++  
Sbjct: 143 DLAVEIPMVGTGASLNVAVAGSLVLYRL 170


>gi|118468881|ref|YP_886013.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170168|gb|ABK71064.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 154

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 19/148 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++   P++  N G   R +      +L LV+P     SE     +      + SV V  
Sbjct: 3   RVMFFSPRIAPNTGNAIRMVAATGC-ELHLVHPLGFDLSEPKLRRAGLDYHDLASVTVHD 61

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L  A     +     AR          P        +  +   +V ++FG E  GL  +
Sbjct: 62  DLPSA-----WQALMPARVYVFTAHASTP------FTDIAYRPGDV-LMFGPEPTGL--D 107

Query: 136 EIALSNAIIS----FPVNPLFPSLNISQ 159
           E  L++  I+     P+     SLN+S 
Sbjct: 108 EQTLADPHITEQIRIPMLAGRRSLNLSN 135


>gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia
           dioxanivorans CB1190]
          Length = 329

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 16/151 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKEAI 81
             N+G V R++  F    + +   R    +  A  +SA     +   R   +   L+E  
Sbjct: 189 PRNLGAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQE-Y 247

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A+   + A  A + +              +++   +   + ++ G E  GL+       +
Sbjct: 248 ANTGLMVAGLAADGDVS------------IDDFDLATDPLVLVIGSEGKGLSRLVRETCD 295

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +S P+     SLN S A  +++ E     
Sbjct: 296 VTVSIPLAREVESLNASVAAGVVLAEVARRR 326


>gi|293364011|ref|ZP_06610747.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
 gi|292552501|gb|EFF41275.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
          Length = 201

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 25/159 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLR-----LVNPRDGWPSEKARSSSANADCVIDS 70
           V+ L + Q   N+G + R   +F++  L      + +P+    ++ A  +         +
Sbjct: 61  VVFLDNLQDPGNVGTIIRLSKSFDIDTLIVKNFDIYSPKCLRSTQGAIFN--------QN 112

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + + +N  + + +L           + F+ V        +        +   +IFG E  
Sbjct: 113 IILVNN-NDLLKELQH---------SGFEIVTTVLNQESIELNNFNFNKKTVVIFGNEGS 162

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           G+  E I  SN  I  P++  F SLN++    +++ +  
Sbjct: 163 GIEKEIINNSNKKIYIPIS--FESLNVATCAAIVLNKWR 199


>gi|302847769|ref|XP_002955418.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
           nagariensis]
 gi|300259260|gb|EFJ43489.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
           nagariensis]
          Length = 162

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+  +AR        +L L +           S S  A+  +    V       +A L  
Sbjct: 13  NLAGLARTCEVMGAGRLVLAD-LAATRDPVFTSVSVTAEQWLPMEEVKP--AALLAWLER 69

Query: 87  IYA---TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             A   T        +SV  P                V ++ GRE+ G+  E ++L +A 
Sbjct: 70  RAAEGYTLVGLEQTAQSVRLPDY---------RWPAKVVLVLGREKEGIPPEVLSLLDAT 120

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +  P   +  SLN+  +  + ++E +       +
Sbjct: 121 LEIPQRGIIRSLNVHVSGAIALYEYVRQMQFPQQ 154


>gi|160875952|ref|YP_001555268.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS195]
 gi|160861474|gb|ABX50008.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS195]
 gi|315268147|gb|ADT95000.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS678]
          Length = 254

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 23/179 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G + RA   + +           + + +    +A +  V    +   + K
Sbjct: 49  LVNPKTPVNVGGIMRASGCYGVD--------GVFYTGRRYELAARSGAV----QYHVDTK 96

Query: 79  EAIADLHFIYATT---ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +A   +     T+   +   +     +     A  L + +        +FG E   +  E
Sbjct: 97  DAGERIPLTGVTSLLASIPADTKLICVDLVVGATPLPDFVHP-AKAFYVFGPEDGTIGQE 155

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194
            I  ++A++  P       +N++ +V ++++    + +  S +      +  +  EL+ 
Sbjct: 156 IIDKADAVVYVPT---VGCMNLAASVNVLLY----DRLAKSHREAASLASNISGDELIR 207


>gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
           L2-6]
          Length = 268

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 20/170 (11%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVID 69
           + P ++L    +   N+G V R+        + +  P+ G  S       SSA A   + 
Sbjct: 113 EPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAGAAERLP 170

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             RV +N+ E          T  R +     V       + L +   +G  + ++ G E 
Sbjct: 171 VARV-ANIGE----------TIRRLKEQGVFVYCADMDGVSLRKNNLTG-PIALVLGSEG 218

Query: 130 WGLTNEEIALSNAIISFPVNPL---FPSLNISQAVLLMVWECMENSIVSS 176
            G++     L + ++S  +        S N+S A  ++++E        S
Sbjct: 219 SGVSQLVKKLCDGVVSLDMTAQGTGVDSFNVSVAAGIILYEIQSQRAAQS 268


>gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
          Length = 250

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 18/153 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           +   N+G + R      +  + +        +     +S  A   +   RV       KE
Sbjct: 109 EDPHNLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKE 168

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++ + T               + A V      +     +I G E  G+       
Sbjct: 169 LKKRGYWFFGT---------------DMAGVDYREWNAKGKTVLIIGNEGKGIAPLLKKQ 213

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +  I+ P+     SLN S A  +++++   + 
Sbjct: 214 MDQTITLPMIGHVQSLNASVATGVLLYQAYNSR 246


>gi|332671651|ref|YP_004454659.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332340689|gb|AEE47272.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 173

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 36/76 (47%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R+R +    +   E ++ L +   + +   ++ G E+ G+  E + L +  +  P+    
Sbjct: 94  RDRGSTVVGVELAEESVRLGDLPAARRRTVVVLGHEQTGIPPEALDLLDVTVEIPMVGTG 153

Query: 153 PSLNISQAVLLMVWEC 168
            SLN++ A  L+++  
Sbjct: 154 ASLNVAVAGSLVLYRL 169


>gi|284031554|ref|YP_003381485.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283810847|gb|ADB32686.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 175

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E A+ L +   +      + G ER G+  E +   + ++  P+     SLN++ A  L++
Sbjct: 109 EEAVRLADLPPARHRTVAVLGHERTGIPPEALDELDLVVEIPMIGTGASLNVAVAGSLVL 168

Query: 166 WEC 168
           +  
Sbjct: 169 YRL 171


>gi|206895173|ref|YP_002247200.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737790|gb|ACI16868.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 238

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             V ++ G E  G+      L +   + P    F SLN+  A+ + ++E        S  
Sbjct: 178 GKVALVVGSEDKGIRTTVRTLCDHFGNIPT--DFESLNVHVALSIALYEAKRQREFKSGS 235

Query: 179 NVK 181
           ++ 
Sbjct: 236 SMD 238


>gi|322710050|gb|EFZ01625.1| RNA methyltransferase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 548

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 71/200 (35%), Gaps = 15/200 (7%)

Query: 2   TPYAPQLQNSAKGPVIIL-VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
             + P+  NSA  P+++L  +     N+G + R      +  + + +      +     S
Sbjct: 340 NTFVPKANNSAMKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKS 399

Query: 61  SANADCVIDSVRVF--SNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNER 114
           +A A    + V +F   +  E +          YA  A   +    +   K  +    E+
Sbjct: 400 AAGAA---EEVTIFTVDSPIEFLEGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDCVEQ 456

Query: 115 IF--SGQNVGIIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECM 169
                     ++ G E  GL  +    ++  +S P         SLN+S A  L+    +
Sbjct: 457 TSPLDQHPCVLVLGNEGHGLPRQIKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCHTFV 516

Query: 170 ENSIVSSEKNVKEQNTPATK 189
           + S  +  +  +     ++K
Sbjct: 517 KGSARNKNRVNQTPEADSSK 536


>gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205744|gb|ADL10086.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330299|gb|ADL20493.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19]
          Length = 290

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 102 LAPKEAAIVLNERI--FSGQ---NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
           L P   A+ L + +   +GQ    V ++ G E  GLT   +  ++     P+ P   SLN
Sbjct: 214 LTPHPEAVHLADALVDATGQPYDKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDSLN 273

Query: 157 ISQAVLLMVWE 167
           ++ +  +  +E
Sbjct: 274 LATSAAIAFYE 284


>gi|328881199|emb|CCA54438.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 272

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R+       +    
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARL-DTWPRGLE--- 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  R        L P E A+ ++E      + V ++ G E  GLT + +  ++  +
Sbjct: 187 -----AVREAGFKLLALTPAEKAMSIDEAAPHRLERVALMLGAEGDGLTTQALRAADEWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P+     SLN+  
Sbjct: 242 RIPMAHGVDSLNVGA 256


>gi|329944512|ref|ZP_08292677.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530277|gb|EGF57156.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 304

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N G + RA        + LV       + K   S+A +   +  +   + L
Sbjct: 158 VLTQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVITGVA-L 216

Query: 78  KEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            +A+A LH    T   A  R +F           +             + G E  GL +E
Sbjct: 217 DDAVAALHEAGLTVLAADGRGDF----------DLFEAESLLEAPSAWLLGNEAHGLPSE 266

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ ++A++S P+     SLN++ A  + ++      
Sbjct: 267 ALSRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQ 303


>gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
           obscurus DSM 43160]
 gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
           obscurus DSM 43160]
          Length = 319

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 9   QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++S + P+++ +       N+G V R+   F+   + +   R    +  A  +SA A   
Sbjct: 164 RDSGRPPLVVAMDGVTDPRNLGAVVRSAAAFDAHGVVVPQRRSVGMTASAWRTSAGAAAR 223

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   R   NL  A+A        T     +    L   +              + ++ G 
Sbjct: 224 LPVARAV-NLARALASYQDAGLMTVGLAGDGDVDLHDFDGFPD---------PLALVVGA 273

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           E  GL+       + ++  P+     SLN+S 
Sbjct: 274 EGAGLSRLVRERCDVVVRIPIARDTESLNVSV 305


>gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           EAS054]
          Length = 197

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 31  DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 90

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 91  VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 136

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            E  GL+       + ++S P+     SLN S A  +++ E         E   + QN
Sbjct: 137 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 194


>gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
 gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
          Length = 254

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  +          + K   ++      I  V+V      ++ 
Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D       T         V         + E+  S   + I+ G E  G+  E   L N 
Sbjct: 167 DFIRSLGDT--------PVFGTFLDGKNMYEQPLSANGL-IVMGNEGNGIGKEVATLINR 217

Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            +  P    +P       SLN++ A  ++  E    +
Sbjct: 218 KLYIP---NYPAGQETSESLNVAIATAVICAEFRRQA 251


>gi|254445462|ref|ZP_05058938.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259770|gb|EDY84078.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 154

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 27/164 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P++ +N G + R       ++L L++P      +K    S        S+ V  +
Sbjct: 4   VVLFQPEIPQNTGNIGRTCAITE-SRLHLIHPLGFVIKDKHLKRS--GMDYWKSLDVHHH 60

Query: 77  LK-EAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              EA          ++  T ++   +  V                 +  G++FG E  G
Sbjct: 61  ESWEAFKASDVGPKRLFLFTTKSSQPYWDVQY--------------EEGDGLLFGNEGHG 106

Query: 132 LTN---EEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMEN 171
             +   +E+   +  ++ P  N    SLN++ A  +  +E M  
Sbjct: 107 APDWLHDEVGE-DRRLNIPQYNSSLRSLNLATAAGVATFEVMRQ 149


>gi|218263084|ref|ZP_03477322.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222958|gb|EEC95608.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVI 68
           + +   V+ L   Q   N+G + R    F +  +   +P      S K   ++  A   +
Sbjct: 98  DPSSSLVLALDGIQDPGNLGTIIRLADWFGIEHIV-CSPDTADVFSPKTVQATMGA---L 153

Query: 69  DSVRVFSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
             V+V    L++ +       A  AR       +         +  +  S   + I+ G 
Sbjct: 154 AHVKVHYTELEDYLK------AQVARQ----IPLFGTFLDGENMYTKELSANGI-IVMGN 202

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIVSSE 177
           E  G+  +   L +  +  P    FP       SLN++ A  ++  E       +++
Sbjct: 203 EGNGIRPQIEELIDQKLYIPS---FPPERETSESLNVAIATAVICAEFRRRQGNAAQ 256


>gi|71893988|ref|YP_279434.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
 gi|71852115|gb|AAZ44723.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 233

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 10/165 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L       ++IL   Q   N+G + R    F +  + L   R    +E     S+    
Sbjct: 73  TLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILPKRRAAKLNETTMKVSSGGFV 132

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +  + + +++  AI  L            +F       +      + I       II G
Sbjct: 133 GLKFI-LVNSIVSAINKL---------KEMDFWIYATDLKEKSRKIQEIQFNYPCAIILG 182

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  G+    +  S+     P+     SLN++ A  ++++   +N
Sbjct: 183 NEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQN 227


>gi|26109353|gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           CFT073]
          Length = 370

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 231 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 289

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 290 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 335

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 336 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 367


>gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
 gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
          Length = 280

 Score = 45.8 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+G +++L       N+G + R+   F++  +           E     + +A   ++ 
Sbjct: 125 AAEGMILVLDQITDPHNVGAILRSAAAFDVKAIV---TTARHSPEATGVLAKSASGALEL 181

Query: 71  VRV--FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V +    NL  A+  L          R      L    A       +   + + ++ G E
Sbjct: 182 VPIITVQNLARALTRLD--------ERGFQTVGLD--SAGPTDIAAVALREPLALVLGAE 231

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             GL        + +    +     SLN+S A +L ++
Sbjct: 232 GKGLRQLTRETCSVVARLDMPGAIKSLNVSNAAVLALY 269


>gi|332637245|ref|ZP_08416108.1| tRNA/rRNA methyltransferase (SpoU) [Weissella cibaria KACC 11862]
          Length = 204

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +    +FG E+ GL +E I  ++A+I  P      SLN+S A  ++       ++ +++ 
Sbjct: 143 EKSVFLFGEEQIGLADELIQAADAMIYIPQTGSVRSLNVSVAHGIIA------ALYTAQH 196

Query: 179 NVKEQNT 185
            V E   
Sbjct: 197 PVPEAPA 203


>gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
          Length = 254

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  +          + K   ++      I  V+V      ++ 
Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D       T         V         + E+  S   + I+ G E  G+  E   L N 
Sbjct: 167 DFIRSLGDT--------PVFGTFLDGKNMYEQPLSANGL-IVMGNEGNGIGKEVATLINR 217

Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            +  P    +P       SLN++ A  ++  E    +
Sbjct: 218 KLYIP---NYPAGQETSESLNVAIATAVICAEFRRQA 251


>gi|160884561|ref|ZP_02065564.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
 gi|293373263|ref|ZP_06619623.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|156110300|gb|EDO12045.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
 gi|292631786|gb|EFF50404.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 254

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  +          + K   ++      I  V+V      ++ 
Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D       T         V         + E+  S   + I+ G E  G+  E   L N 
Sbjct: 167 DFIRSLGDT--------PVFGTFLDGKNMYEQPLSANGL-IVMGNEGNGIGKEVATLINR 217

Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            +  P    +P       SLN++ A  ++  E    +
Sbjct: 218 KLYIP---NYPAGQETSESLNVAIATAVICAEFRRQA 251


>gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 317

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 24/167 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSN---- 76
           Q   N+G + R+ +   +   R+V  +      +     +S+ A  V D   V+S     
Sbjct: 163 QDPMNLGALLRSAYFLGVD--RVVTSQRNSCPLTPTVSKASSGAMEVFD---VYSTDDLR 217

Query: 77  --LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             LK   A+   +  T +++          +   ++        + + ++ G E  GL+ 
Sbjct: 218 SFLKAKAAEGWEVVGTVSQSE-------TVENVPVISCLEFRWNKPIILVIGSEGDGLSL 270

Query: 135 EEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSSE 177
           E   L + ++  P     +P   SLN+S A  +++       + +S+
Sbjct: 271 ETQLLCHQMLVIPSGRALHPGIESLNVSVATGILLHSICSQKLRNSD 317


>gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan
           troglodytes]
          Length = 353

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 27/199 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N G V R+     + +  + + R+  P +     SSA A  V+D   VFS 
Sbjct: 149 VLDGIQDPRNFGAVLRSAHFLGVDK-VITSRRNSCPLTPVVSKSSAGAMEVMD---VFST 204

Query: 77  ------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 L+        +  T               E  I+        +   ++ G E  
Sbjct: 205 DDLTGFLQTKAQQGWLVAGTVGCPSTEDPQ---SSEIPIMSCLEFLWERPTLLVLGNEGS 261

Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVWECMENS-----IVSSEKN 179
           GL+ E  A    +++       P  P   SLN+S A  +++                 + 
Sbjct: 262 GLSQEVQASCQLLLTILPRRQLP--PGLESLNVSVAAGILLHSICSQRKGFPTEGERRQL 319

Query: 180 VKEQNTPATKGELLSFLDY 198
           +++    + + E LS   +
Sbjct: 320 LQDPQELSARSEGLSMAQH 338


>gi|91216324|ref|ZP_01253291.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
 gi|91185462|gb|EAS71838.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
          Length = 242

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 20/151 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE-AIAD 83
             N+G + R    F + QL          + K   ++  +   ++   +F++L+   ++ 
Sbjct: 108 PGNLGTIIRMCDWFGVKQLICSLDTVDCFNPKVVQATMGSLTRVN--VIFTDLESYLLST 165

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
            +F Y                      + E     +N  I+ G E  G+++E  +  +A 
Sbjct: 166 SNFKYG--------------AFMDGENIYETSLKTKNAIIVLGNEANGISSEINSQLDAK 211

Query: 144 ISFPVNP---LFPSLNISQAVLLMVWECMEN 171
           IS P +       SLN++ A  +M+ E    
Sbjct: 212 ISIPRHGVIKSAESLNVAMAGAIMLSEFKRR 242


>gi|148981772|ref|ZP_01816520.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145960739|gb|EDK26078.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 160

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC-VIDSVRV- 73
            I LV+P+  EN+G V RA   +    +     R       AR    +     ++   + 
Sbjct: 15  CIGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDH----ARKFHTDTKEKHLELPLIG 70

Query: 74  FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              LK+ I      +              +   E A  L +          IFG E   L
Sbjct: 71  VEELKDIIPVGCVPVA-------------VDLIEGAKPLPDYKHP-PRAFYIFGPEDGTL 116

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             E        I  P N     +N++ +V ++++
Sbjct: 117 KKEITDFCRDTIYVPTNGC---MNLAASVNVVLY 147


>gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT]
 gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT]
          Length = 262

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + V I  G E  G+++E   L +  +  P+     SLN+  A  +M++E +  
Sbjct: 205 KKVIICVGNEGNGVSDEVYNLGDERVKIPMPGDAESLNVGVAASIMMYEVVRQ 257


>gi|114563829|ref|YP_751342.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB
           400]
 gi|114335122|gb|ABI72504.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB
           400]
          Length = 180

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 47/176 (26%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD-- 65
           + +  +   I LV+P+   N+G + RA           V+      + K    +A +   
Sbjct: 2   VNSPFQQVTIGLVNPKTPVNVGGIMRAA---GCYN---VDNVCY--TGKRYELAAKSGDA 53

Query: 66  ----CVIDSVRV-----FSNLKEAIAD------LHFIYATTARNRNNFKSVLAPKEAAIV 110
                  D+ +        +L +++ D      +  +   T          + P      
Sbjct: 54  QYDVDTKDAAKRIPLVGVESLLDSVPDGATIICVDLVVGAT-----PLPLFIHPD----- 103

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                    N   IFG E   +  + I  ++ ++  P       +N++ +V ++++
Sbjct: 104 ---------NAFYIFGPEDGTIPQQLIDAADDVVYVPT---VGCMNLAASVNVLLY 147


>gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
           SL3/3]
          Length = 297

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVID 69
           + P ++L    +   N+G V R+        + +  P+ G  S       SSA A   + 
Sbjct: 142 EPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAGAAERLP 199

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             RV +N+ E          T  R +     V       + L +   +G  + ++ G E 
Sbjct: 200 VARV-ANIGE----------TIRRLKEQGVFVYCADMDGVSLRKNNLTG-PIALVLGSEG 247

Query: 130 WGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSS 176
            G++     L + ++   +        S N+S A  ++++E      V  
Sbjct: 248 SGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRAVEE 297


>gi|153800597|ref|ZP_01955183.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|124123886|gb|EAY42629.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
          Length = 257

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 170 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 213

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255


>gi|325000927|ref|ZP_08122039.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
          Length = 269

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R      + L P   A  L     +G  V  + G E  GLT+E +  ++  +  P+    
Sbjct: 190 REAGFTVAALTPDAGAEPLATAGLAGGRVAWLLGAEGPGLTDEALTAADRRVRIPMATGV 249

Query: 153 PSLNISQ 159
            SLN++ 
Sbjct: 250 DSLNVAT 256


>gi|306844547|ref|ZP_07477136.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1]
 gi|306275158|gb|EFM56914.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1]
          Length = 189

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 39/170 (22%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++A   +      ++    
Sbjct: 34  RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQA-- 86

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE-----AAIVLNERIFS-------GQNV 121
                             A  R+                 ++L+ +           +N 
Sbjct: 87  ------------------ALTRHPDWHCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQEND 128

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++FGRE  G+       ++  +  P+     SLN++ +V +   E +  
Sbjct: 129 ILLFGRESAGVPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 178


>gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 274

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 17/171 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L + +   +++  D +   N G V R         +          + K+  ++  +  
Sbjct: 116 ALLDRSPTFLVVCADIRDPGNAGAVIRCADAAGADGVVFTGDSVDPYNPKSVRATVGSLF 175

Query: 67  VIDSV--RVFSNLKEAI--ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +  V  R       A+  A L  + A  A + + F   L                    
Sbjct: 176 HLPLVIDRDVEGTLAALQSAGLQVLAADGAGDVDLFDPSLD-------------LAAPTA 222

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            + G E WGL       ++ +++ P+     SLN++ A  + ++    + +
Sbjct: 223 WLMGNEAWGLPEATRGRADHVVAVPIFGRAESLNLATAAAVCLYTTARSRL 273


>gi|307128548|ref|YP_003880578.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
 gi|306483010|gb|ADM89880.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
          Length = 260

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 14/158 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   +   N+G + R      +  + L N +    +     SS           +F+N 
Sbjct: 114 ILEGIEKPGNLGAILRTADAVGIDAILLCNNKVDIFNPNVIRSSLG--------TIFTN- 164

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKE--AAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           K  IA+   I   +  N+N  K +             ++I   +++ II G E  GL++ 
Sbjct: 165 KIVIANYKIII--SWLNKNKIKIISTSVNKIYNNFFMKKIKK-KSLAIIIGSESKGLSDI 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                  +I+ P+     SLN+S +  ++++E +   +
Sbjct: 222 WFKNKKNMINIPIKGKIDSLNVSTSTAIILYEILRQKL 259


>gi|315123535|ref|YP_004065541.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315017295|gb|ADT70632.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 171

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 57/152 (37%), Gaps = 26/152 (17%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L++P+   N+G V RA                G    +    + N    +++ +  ++ K
Sbjct: 10  LINPKSPTNVGGVLRA---------------AGCYDAQQVFFTGN--RYLNAQKFHTDTK 52

Query: 79  EAIADLHFIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +  +    AT    +++ +     V+   E A  L E     +N   +FG E   +  
Sbjct: 53  NVVQRIPLT-ATDNLASSKPQGAKVVVIELIEGATPLPEFTHP-ENAFYVFGPEDGSVPK 110

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + +   + ++  P       +N++    ++++
Sbjct: 111 DVLKWCDEVVYIPT---IGCMNLAATCNVVLY 139


>gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
 gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
          Length = 255

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 10/164 (6%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P +P     +    +IL   Q   N+G + R         + L        ++K   +S 
Sbjct: 98  PSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVLRASQ 157

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   ++ V     L+EA           A        ++          + + + Q + 
Sbjct: 158 GSLWHLE-VVSLDLLQEARP---------AFEAAGIPWLVTALHQEAKAYQEVPANQKLA 207

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  G++   I +++  I  P+     SLN++ A  ++++
Sbjct: 208 LVLGNEGQGVSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMF 251


>gi|237753039|ref|ZP_04583519.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375306|gb|EEO25397.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 22/153 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       NIG + R  +   +  + +      +  E    +S+ A   +    V++
Sbjct: 85  VLVLCGISDVGNIGALFRTAFVLGVDGIVICG-LKDFKQEGVLRASSGAMLDMPFCLVYN 143

Query: 76  NLKEA----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            L  A     A     Y  + +                 +     +     +  G E  G
Sbjct: 144 ALDVANELKFAGFRL-YGASLKG----------------VESNGVTQGKKALFLGAEGNG 186

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           L+ + +   +  ++      F SLN+S A  ++
Sbjct: 187 LSAKILKKMDINLTIAQKREFDSLNVSTAGAIL 219


>gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 253

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 26/179 (14%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSS 61
           +  N  + P ++L+ +     N G + R+         +T+ R  N     P+ +   +S
Sbjct: 86  EAANKGEKPFLVLLDEITDPHNFGSIIRSAHLCGAHGIITEAR--NSCPITPTVE--KAS 141

Query: 62  ANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           A A   I   RV +    +        ++YA                  A          
Sbjct: 142 AGAIEHIKVARVVNLRRTIDSLKEKGVWVYA--------------ADNNAEKFVYDCDFK 187

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             + II G E  G++      ++ ++  P      S N S A  ++ +E ++  +   E
Sbjct: 188 IPICIIIGSEGKGISRLVKEGADFLVKIPQKGKINSYNASVAAGIIFFEVLKQRMQEGE 246


>gi|210633174|ref|ZP_03297710.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
 gi|210159214|gb|EEA90185.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
          Length = 303

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            + S + + +  G E  GL  + IA  +  I  P+     SLN++ A  +  W+ 
Sbjct: 233 ALQSIERLAVFMGTEGAGLQPKTIAGCDKTIRIPMAHGVDSLNVAAASAVAFWQL 287


>gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
 gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
          Length = 253

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 12/154 (7%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L + Q   N+G + R      +  + L        + K   S+  +   +    +  NL 
Sbjct: 112 LDEVQDPGNLGTIIRTADAAGIDVIVLGEGTADLYNPKVLRSAQGSHFHLP--IIKGNLS 169

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
             I           R R     V             + S  +  +I G E  G++   + 
Sbjct: 170 SWID----------RLRTEEIPVYGTALENSAAYHTVNSTDSFALILGNEGNGVSPSILD 219

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++  +  P+     SLN++ A  ++++   +  
Sbjct: 220 STDQNLYVPIYGKSESLNVAIAAGILMYHLKKAQ 253


>gi|15640821|ref|NP_230452.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585767|ref|ZP_01675562.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121725984|ref|ZP_01679283.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147674554|ref|YP_001216286.1| RNA methyltransferase [Vibrio cholerae O395]
 gi|153817294|ref|ZP_01969961.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|153821410|ref|ZP_01974077.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|227080982|ref|YP_002809533.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|254847940|ref|ZP_05237290.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|297581202|ref|ZP_06943126.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|298499065|ref|ZP_07008872.1| RNA methyltransferase [Vibrio cholerae MAK 757]
 gi|9655252|gb|AAF93967.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121550130|gb|EAX60146.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121631466|gb|EAX63836.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|126512210|gb|EAZ74804.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126521120|gb|EAZ78343.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|146316437|gb|ABQ20976.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|227008870|gb|ACP05082.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|227012627|gb|ACP08837.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|254843645|gb|EET22059.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|297534518|gb|EFH73355.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|297543398|gb|EFH79448.1| RNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 257

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 170 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 213

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255


>gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
           39073]
 gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
           39073]
          Length = 246

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 25/55 (45%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           ++ G E  GL+    +  +  +  P+     SLN++ A  ++++E +     +  
Sbjct: 192 LVLGSEGRGLSPLVRSRCDFTVHLPMRGRINSLNVATAATVLMYEVLRQRGQARP 246


>gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 244

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 21/152 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N G + R      +  + +        +     +SA A   I   +V +++K+A+     
Sbjct: 109 NFGAIIRTAECCGVDAIIIPEKGAAPINADTVKTSAGAVFNIPICKV-NHIKDAVFYLQS 167

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + +  + AT               E    L   I   +   II G E  G++   +   +
Sbjct: 168 SGIQTVAAT---------------EKTDNLIYNIDFKKPTAIIMGNEAKGISPSILKTID 212

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                P++    SLN+S A    ++E +   I
Sbjct: 213 HKAKLPMHGEIASLNVSVACGAFLYEVVRQRI 244


>gi|288956990|ref|YP_003447331.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909298|dbj|BAI70787.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 194

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 53/166 (31%), Gaps = 21/166 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
               N+G + R    F  +    ++P       K   +S     +     +   + +   
Sbjct: 13  SKPGNVGNLMRTAHAFGASFFFAIDPEPDLRETKLVDTSGATLHLPLY--IHDRVADFTL 70

Query: 82  -ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
             D   +              +   + A+ L            + G ER  L+   +   
Sbjct: 71  PKDCALVG-------------VELTDDAVELP-SFRHPSRAAYVLGPERDSLSPALLERC 116

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           + ++  P++     +N+  A  L++++ M +    +E+ V+     
Sbjct: 117 DHVVKIPMS---FCINVGVAGALVMYDRMISLGRFAERPVRPGGPL 159


>gi|256825192|ref|YP_003149152.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256688585|gb|ACV06387.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 269

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 12/133 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R++         LV PR   P   ++   S      +   R+       +A+L 
Sbjct: 133 NVGAIFRSVAALG-ADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRI-DPWPAGMAELQ 190

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
               T A         LA ++ A+ + +      + + ++ G E  GL  + +  ++  +
Sbjct: 191 GAGFTVA--------ALALRDDAVTMQQLAADPPERLALVLGTEGDGLAPQTVEGADLAV 242

Query: 145 SFPVNPLFPSLNI 157
             P++    SLN+
Sbjct: 243 RIPMSGGVDSLNV 255


>gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
           DSM 5159]
 gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
           DSM 5159]
          Length = 271

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 19/184 (10%)

Query: 3   PYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60
           P  P    +A+    +I+   Q   N+G + R+     +    L+ P    P + K   +
Sbjct: 104 PSIPFRLPTAEPLFALIVDRLQDPGNLGTLLRSALGAGVHA-VLLTPGTVDPFNPKVVRA 162

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQ 119
           +A A   +        L              A  R      ++  +  A+   +     +
Sbjct: 163 AAGAHFHLPIA----TLDPV-----------AIQREFPGLEIVVARPQALRAYDERDWTR 207

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
              ++ G E  G++ E   L+   +  P+     SLN   A  ++++E       +  K 
Sbjct: 208 ASAVVIGSEAHGISAELARLAADEVRIPLRGGVESLNAGVAGSIILFEAARQRRHAERKA 267

Query: 180 VKEQ 183
              +
Sbjct: 268 TTGE 271


>gi|256061599|ref|ZP_05451740.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
          Length = 159

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++A   +      ++   +
Sbjct: 4   RVALYQPDIPGNTGTILRMVACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQAAL 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +      D        A  +N  + ++     A +        +N  ++FGRE  G+ 
Sbjct: 59  TRHPDWNCFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 ++  +  P+     SLN++ +V +   E +  
Sbjct: 111 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 148


>gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
 gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
 gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
 gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
          Length = 257

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 20/148 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E   
Sbjct: 117 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 174

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            + + +  +Y T+  N   +  V  P               +  +I G E  G+  E + 
Sbjct: 175 KLKEKNVPVYGTSLENGIPYGEV-TP-------------TGSFALIVGNEGNGVRLEILT 220

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
             N  +  P+     SLN++ A  ++ +
Sbjct: 221 KCNQNLYIPIYGGAESLNVAVAAGILTY 248


>gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
           M21/2]
          Length = 297

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS--EKARSSSANADCVID 69
           + P ++L    +   N+G V R+        + +  P+ G  S       SSA A   + 
Sbjct: 142 EPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVI--PKRGGASVTPTVIKSSAGAAERLP 199

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             RV +N+ E          T  R +     V       + L +   +G  + ++ G E 
Sbjct: 200 VARV-ANIGE----------TIRRLKEQGVFVYCADMDGVSLRKNNLTG-PIALVLGSEG 247

Query: 130 WGLTNEEIALSNAIISFPVNP---LFPSLNISQAVLLMVWECMENSIVSS 176
            G++     L + ++   +        S N+S A  ++++E      V  
Sbjct: 248 SGVSQLVKKLCDGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRAVEE 297


>gi|209886113|ref|YP_002289970.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5]
 gi|209874309|gb|ACI94105.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5]
          Length = 158

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P + +N G + R      + +  ++ P     S++    +      +D V +  
Sbjct: 2   RIALYQPDIPQNTGTILRLCACLEV-EAHIIEPAGFPVSDRHFRRA--GMDYLDRVSIS- 57

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
                   + +      R  +  + VL   +AA       +   ++ ++FGRE  G+ +E
Sbjct: 58  ------RHVSWNAFRVWREADGGRLVLFTTKAATSYLAHRYEDTDI-LLFGRESAGVPDE 110

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               ++  +  P+     SLNI+ +  + + E +  +
Sbjct: 111 VAESADQRLLIPIAEGMRSLNIAVSAAMALGEALRQT 147


>gi|229525446|ref|ZP_04414851.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
           VL426]
 gi|229339027|gb|EEO04044.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
           VL426]
          Length = 244

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium
           johnsoniae UW101]
          Length = 244

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 21/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            + + +K   +IL       N G + R      +  + +        +     +SA A  
Sbjct: 89  TIASGSKPLFLILDQISDARNFGAIIRTAECTGVNGIIVQKAGSAPVNGDTVKTSAGAVF 148

Query: 67  VIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            +   +V  ++K+AI     + +  + AT   ++N +                +   + +
Sbjct: 149 NVPICKV-EHIKDAIFYLQGSGIKTVAATEKTDQNIY---------------DLSLNEPL 192

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            II G E  G+    + + +     P+     SLN+S A    ++E +   
Sbjct: 193 AIIMGSEDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLYEAVRQR 243


>gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           metalliredigens QYMF]
          Length = 272

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAM---WNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            L+      +++L + Q   N+G + R            + L        + K+  ++  
Sbjct: 114 DLEKKENPFIVVLDEIQDPGNLGTIIRTAEGAKT---DAIILTKGCVDPYNSKSIRATMG 170

Query: 64  ADCVI------DSVRVFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           A   +      ++      LK  A+     + +T   ++N+F               ++ 
Sbjct: 171 AIFHLPIIQSNNNEEWIYYLKANAVK---LVASTLETDKNHF---------------QLD 212

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
               + +I G E  G+  + +A  +  +  P+     SLN S A  +++++
Sbjct: 213 YNNPIAMIIGNEARGIHPDILAQVDERVKIPILGKIESLNASVAAGILIYQ 263


>gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 240

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 28/163 (17%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANADCV 67
           + P+++LV       N G + R          +++ R    R    S  A  +SA A   
Sbjct: 90  EPPLLVLVDGVTDPRNFGAILRTAEALGAHGVVSEER----RSAPLSPVAVKASAGAAHR 145

Query: 68  IDSVRVFSNLK---EAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I  VRV  NL    E +  L  ++Y T                 A      +   + + +
Sbjct: 146 IPVVRV-KNLPRYIEWLKGLGVWVYGTAG--------------QAEKTLAELDYARPLAL 190

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + G E  G+        + ++   +     SLN++ A+ + + 
Sbjct: 191 VVGSEGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALH 233


>gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15]
 gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15]
          Length = 254

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +++    N  II G E  G++   ++L++  +  P+     SLN+  A  ++++
Sbjct: 193 AHALDKVEKSDNFAIIMGNEGQGVSQGILSLTDQNVYIPMKGNAESLNVGVAAGIVLY 250


>gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 268

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 16/173 (9%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62
               L    +   ++L   Q   N+G + R+     +      +P      S K   +  
Sbjct: 111 RPRPLPERVEATCVVLDGVQDAGNVGSILRSAAAAGIGD-VFCSPGTAHAWSPKVLRAGM 169

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  ++   RV   ++ A      +       R      +     A  L +   SG  + 
Sbjct: 170 GAQFLL---RVHEQVEAA----DLLA------RLAVPVFVTDSHDAQALYDVDLSG-PLA 215

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +FG E  G++ E  A  +  ++ P      SLN++ A  +  +E      V+
Sbjct: 216 WVFGNEGAGVSAEWRAAVSRRVTIPQPGGMESLNVAAAAAVCFFEQCRQRRVA 268


>gi|86130703|ref|ZP_01049303.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85819378|gb|EAQ40537.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 261

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 13/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +LQ      +++   P+   NIG + R      +  + + NP+    +     SS     
Sbjct: 108 ELQLPVNPLILVTEAPEKPGNIGALLRTADAAAVDAVIIANPKTDLYNPNIIRSSVGCVF 167

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                    + +E I+ L            +     A  + A+    + ++G +  I+ G
Sbjct: 168 TTQIAT--GSTEEVISFLQ---------EKDVAIYSAILQKAVDYATQAYTGGS-AIVVG 215

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  GL+  E       I  P+     S+N+S A  ++++E     
Sbjct: 216 TEATGLSP-EWRTVGTNIKIPMRGKIDSMNVSVAAGILIFEARRQR 260


>gi|223985232|ref|ZP_03635316.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
           12042]
 gi|223962810|gb|EEF67238.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
           12042]
          Length = 239

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 24/176 (13%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSA 62
              +  ++ +  + +L   +   N+G   R ++    T   L+  RD          SSA
Sbjct: 80  SVQECLDAPQPFIAVLEGIEDPFNLGYAFRTLYAAGCTG-VLMGSRDWQTAQPTIVKSSA 138

Query: 63  NADCVIDSVRVFSNLKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            A   +    +  +L  A+     A      A     R++                    
Sbjct: 139 GASEQLAWC-LCEDLGAAVRQCRQAGCVLYCA----QRSDAIDYFDADFN---------- 183

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENS 172
            Q + +  G E  GL+ + +  S+  I  P   P+  +LN + AV  + +E +   
Sbjct: 184 -QPIVLAIGGELRGLSRDVLEQSDQNIVIPYARPVRSALNGTSAVAAISFEVVRQR 238


>gi|145507310|ref|XP_001439610.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406805|emb|CAK72213.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1396

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 35/170 (20%)

Query: 17   IILVDP---QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            II+V     ++  N G + R    F   +L L N +     E+ ++ S +A+  +  + +
Sbjct: 1247 IIVVATLLEKIP-NFGHLTRTCEIFGCRELVLPN-KKILQDEQYQAVSVSAEQHLPILEI 1304

Query: 74   FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-----------NVG 122
              +                   +    +   +     L     + Q              
Sbjct: 1305 KED-------------------HLMNYLQLKRLQGYQLVALEQTSQSKSIVNFKFDKKTV 1345

Query: 123  IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ GRE+ GL  E I L +  +  P   +  SLN+  + ++ VW+ ++  
Sbjct: 1346 LVLGREKTGLPIEYIELMDNCVEIPQYGVIRSLNVHISAVICVWQYVQQW 1395


>gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 276

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 24/163 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +T +          +  A            + +       +IA
Sbjct: 129 QDPGNLGTIIRIADWFGITDIV-----CSEDTADAY-----------NPKTVQATMGSIA 172

Query: 83  DLHFIYA-TTARNRNNFK--SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
               +Y   +A   +      V         + E+  +   V II G E  G++ E    
Sbjct: 173 RTKIVYTDLSAYLESLPNETPVYGTMLDGTDIYEQSLTHHGV-IIMGNEGKGISKEITRH 231

Query: 140 SNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            N  +  P      P   SLN++ A  +   E    S++   +
Sbjct: 232 INHRLFIPGYPKDRPSAESLNVAIATAITCAEFRRRSLLEDTR 274


>gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 246

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 14/140 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+   F    + L        +EK+  +S  +   +  V++ +   E +   
Sbjct: 110 PGNMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLRASMGSVFRLKLVKLSN--DEIVN-- 165

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                   ++R  F   LA       + +   S +N+ +  G E  GL++   +L+++ +
Sbjct: 166 -------LKSRYKF---LASHMEGCDVRKYDASLENIILAIGNEANGLSDFLRSLTDSFV 215

Query: 145 SFPVNPLFPSLNISQAVLLM 164
              +     SLN + A  +M
Sbjct: 216 KIAMQGKIESLNAAIAASIM 235


>gi|298209014|ref|YP_003717193.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83848941|gb|EAP86810.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 244

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    FN+  L          + K   ++  +   ++   ++++L + +  L
Sbjct: 107 PGNLGTIIRLCDWFNIQSLICSKDTVDCYNPKVVQATMGSLTRVE--VIYTDLHKHLNTL 164

Query: 85  HF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              I+ T     + +   L                ++  I+ G E  G+T E   L N  
Sbjct: 165 DLPIFGTFMNGESVYSKPLP---------------EDFVIVMGNEANGVTKEIEELCNHR 209

Query: 144 ISFP---VNPLFPSLNISQAVLLMVWECMENSIV 174
           I+ P         SLN++ A  + + E     I 
Sbjct: 210 IAIPQFGSGAPTESLNVATATAITLSEFSRRLIE 243


>gi|21220051|ref|NP_625830.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|256788841|ref|ZP_05527272.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772734|ref|ZP_06532112.1| rRNA methylase [Streptomyces lividans TK24]
 gi|7106669|emb|CAB76071.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|289702933|gb|EFD70362.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 272

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R+       +A   
Sbjct: 132 NIGAIFRSAAALGM-DAILLSPDCADPLYRRSVKVSMGAVFSVPYARL-DTWPAGLA--- 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                           L P E A  L+         V ++ G E  GLT   +A S+  +
Sbjct: 187 -----AVGEAGFTLLALTPDERAEPLDAVAPHRMDRVALMLGAEGSGLTRRALAASDTWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P++    SLN+  
Sbjct: 242 RIPMSHGVDSLNVGA 256


>gi|305664506|ref|YP_003860793.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88708523|gb|EAR00759.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 240

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 54/149 (36%), Gaps = 20/149 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    F +  L          + K   +S  +   ++   V+++L   +   
Sbjct: 108 PGNLGTIIRLCDWFGIKNLLCSENTVDCFNPKVLQASMGSITRVN--VVYTDLVTFLEQT 165

Query: 85  HF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              +Y T                 A  +  +    + + ++ G E  G++++   L N+ 
Sbjct: 166 KLPVYGT--------------FMNAASVYNKALPKKGI-LVMGNEGNGISSDIENLVNSK 210

Query: 144 ISFP--VNPLFPSLNISQAVLLMVWECME 170
           IS P   +    SLN++ A  + + E   
Sbjct: 211 ISIPQFGDKATESLNVASATSIFLSEIRR 239


>gi|298714780|emb|CBJ25679.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 363

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 69/185 (37%), Gaps = 23/185 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS----SSAN 63
           L    +   ++  +P    N+    R + +F +    +V+    + S++AR     ++  
Sbjct: 147 LDQRTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTY-SKQARLKTMCTAMG 205

Query: 64  ADCVIDSVRVFSNLKEAIA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +   + ++      ++A+A    D + + A+           L+P    I     I    
Sbjct: 206 SQKWL-TLHGHDRPEDAVAKLKTDGYQVVAS----------DLSPSAVPI---SEIDWSV 251

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
              ++ G E  G+++    +++A    P+     S N+S A  +++        +     
Sbjct: 252 PTAVVLGNEERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIILAHLSAVRALKHGDL 311

Query: 180 VKEQN 184
            +++ 
Sbjct: 312 PEDER 316


>gi|91211908|ref|YP_541894.1| putative methyltransferase [Escherichia coli UTI89]
 gi|237705091|ref|ZP_04535572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073482|gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           UTI89]
 gi|226901457|gb|EEH87716.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 370

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---VFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++      +  +    + + L +
Sbjct: 231 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEYVQPITGDNIVNVLDD 289

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 290 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 335

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 336 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 367


>gi|312139879|ref|YP_004007215.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311889218|emb|CBH48532.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 266

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +    +FG E  GL       ++  +  P+     SLN++ A  + ++
Sbjct: 208 ARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICLY 256


>gi|297626644|ref|YP_003688407.1| RRNA methylase family protein (tRNA/rRNA methyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922409|emb|CBL56981.1| RRNA methylase family protein (TRNA/rRNA methyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 269

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 7/144 (4%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R           L+ PR   P   +A  +S  +   +   R+  + ++ +A L 
Sbjct: 131 NVGAIIRCAAGLGWDG-VLLAPRAADPLYRRAIKTSMGSVFSMPWARM-DDWRDGLATLQ 188

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T          +   E A  +  R      + I+ G E  GL+   I+ ++A + 
Sbjct: 189 RA-GFTVAALALRDDAVGLDEFAARMRARP---GKLAILMGTEGAGLSGHWISQADAAVR 244

Query: 146 FPVNPLFPSLNISQAVLLMVWECM 169
            P+     SLN++ A  +  +   
Sbjct: 245 IPMAHGIDSLNVAAAAAVACYALR 268


>gi|325674243|ref|ZP_08153932.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554923|gb|EGD24596.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 266

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +    +FG E  GL       ++  +  P+     SLN++ A  + ++
Sbjct: 208 ARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICLY 256


>gi|320170244|gb|EFW47143.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 220

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +N  ++ G E+ GLT + + L++ I+  P+  +  S N+S A  + ++E  + 
Sbjct: 163 DRNTVLVIGNEKSGLTQDILNLADDILEIPIYGMPYSHNVSAATAIAIYEYCKQ 216


>gi|257459137|ref|ZP_05624256.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
           RM3268]
 gi|257443522|gb|EEV18646.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
           RM3268]
          Length = 233

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL       NIG + R+ +      + +V   +         +S+ A   ++ V+    L
Sbjct: 87  ILYGLTDVGNIGAIMRSAYALGADSVIVVA--NNLNMAGVVRASSGAAYELNVVKAADGL 144

Query: 78  KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              + +L      IYA +A                    + +  G    ++ G E  G+ 
Sbjct: 145 -SVLNELKQSGFEIYAASA---------------GGTSFKELELGAKNALVMGNEEEGIP 188

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              +   +  +S  +   + SLN+S A  ++ 
Sbjct: 189 ARALKKCDCAVSIKMREGWDSLNVSAAFAILC 220


>gi|229505582|ref|ZP_04395092.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
 gi|229510746|ref|ZP_04400225.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
 gi|229517867|ref|ZP_04407311.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
 gi|229523380|ref|ZP_04412787.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
 gi|229608600|ref|YP_002879248.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
 gi|255744607|ref|ZP_05418558.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
 gi|262161261|ref|ZP_06030372.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
 gi|229339743|gb|EEO04758.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
 gi|229344582|gb|EEO09556.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
 gi|229350711|gb|EEO15652.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
 gi|229357805|gb|EEO22722.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
 gi|229371255|gb|ACQ61678.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
 gi|255737638|gb|EET93032.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
 gi|262029011|gb|EEY47664.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
          Length = 244

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|323156241|gb|EFZ42400.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli EPECa14]
          Length = 247

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 108 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 166

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 167 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 212

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 213 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 244


>gi|331006043|ref|ZP_08329383.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
 gi|330420152|gb|EGG94478.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
          Length = 266

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS-VRVFS 75
           I L      +N+GM+ R++    +  L L  P  G  +  +    A+A  +  + +    
Sbjct: 123 IALDRITNPQNLGMIIRSVCAGKIDGLLL--PSKGCATIDSLVVKASAGTLFKAPLLHCE 180

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L  A+ +     AT          V      A        + Q V  + G E  G++ E
Sbjct: 181 SLTGALHESKKQGAT----------VYGLSSHATQSISDKQTDQFVIYVLGNETEGMSQE 230

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              L +  IS P+N    SLN++    L+ +
Sbjct: 231 ISTLCDKRISIPMNNGVESLNVAITASLLAF 261


>gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 270

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      L  L ++      P +     ++    +     V  +L   + 
Sbjct: 138 QDPGNLGTLIRTADAAGL-DLIVMEKGTADPYQDKVMRASQGS-IFHIPVVTEDLATYMN 195

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           +    +Y T               E A+   E I +     ++ G E  G+  E +  + 
Sbjct: 196 NFDGPVYGTA-------------LENAVSFKE-IEAQSTFALLLGNEGEGVNQELLQQTT 241

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             +  P+     SLN++ A  +++++ 
Sbjct: 242 KNLIIPIYGKAESLNVAIAGSILLYQL 268


>gi|229513059|ref|ZP_04402525.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
 gi|229349952|gb|EEO14906.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
          Length = 244

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFQAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
 gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
          Length = 249

 Score = 45.4 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 18/155 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L D Q   N+G + R    F   Q  + +P      + K   ++  +   +     +++
Sbjct: 109 VLDDVQDPGNLGTIIRTAEWFGFRQ-IICSPHTVEVYNPKTVQATMGSLSRLK--VYYTD 165

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L   ++             N    V         + E    G    +I G E  G++ E 
Sbjct: 166 LAPLLS-------------NTPVPVFGAVLDGKSIYE-GGWGTEGLVILGNEGQGISPEI 211

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + L    ++ P      SLN++    ++  +   N
Sbjct: 212 MKLITHPVTIPRVGAAESLNVAICAAILCADISRN 246


>gi|307069598|ref|YP_003878075.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
           Zinderia insecticola CARI]
 gi|306482858|gb|ADM89729.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
           Zinderia insecticola CARI]
          Length = 239

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +I G E+ G++     + + IIS P+     +LN+S A  + ++E ++N
Sbjct: 188 IVLIMGSEKNGISKTIKKMCDFIISIPMLGKINNLNVSVATGIFLYEIIKN 238


>gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
 gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
          Length = 265

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 20/148 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI- 81
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 82  ---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
               +   +Y T   N   +  V  P               +  +I G E  G+  E +A
Sbjct: 183 KLKENSVPVYGTALENGVPYGEV-TP-------------AGSFALIVGNEGSGVRQEILA 228

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            ++  +  P+     SLN++ A  ++ +
Sbjct: 229 KTDQNLYIPIYGGAESLNVAVAAGILTY 256


>gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 253

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--- 66
            +  G  +IL + Q   N+G + R       + + L        S K   S   ++    
Sbjct: 104 QTLTGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLP 163

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +++   +   LK+  +    IY T        K  +   E            Q    I G
Sbjct: 164 ILEGA-IPPFLKQLRSAGVTIYGT-----ELNKEAVPYTELPKE--------QTAAFILG 209

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E  G+  E +AL++  +  P+     SLN++ A  ++++
Sbjct: 210 NEGQGVHPELLALTDKNVYIPIYGQAESLNVAIAAGILMY 249


>gi|315605817|ref|ZP_07880849.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312515|gb|EFU60600.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 242

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             E         ++FG E  GL+ E +A  + +++        S+N+  A  +++W
Sbjct: 176 ALEETILPAKACLVFGSEALGLSEEMLAACDVVVAVTQRGSTRSMNVGHAAAIVMW 231


>gi|302533437|ref|ZP_07285779.1| rRNA methylase [Streptomyces sp. C]
 gi|302442332|gb|EFL14148.1| rRNA methylase [Streptomyces sp. C]
          Length = 271

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 18/138 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           NIG + R+     +    L++P    P   ++   S  A   +   R+ +   +L     
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKSLD---- 186

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVL-NERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                   T R        L P E A  +      +   V ++ G E  GL+ + +  ++
Sbjct: 187 --------TVREAGFKLLALTPHEKASPIDVAAPQTLDRVALMLGAEGDGLSTQALVAAD 238

Query: 142 AIISFPVNPLFPSLNISQ 159
             +  P+     SLN+  
Sbjct: 239 EWVRIPMAHGVDSLNVGA 256


>gi|15803108|ref|NP_289139.1| putative methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|25325044|pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517002|gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 345

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +  
Sbjct: 208 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFR 266

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + +  T++      K +            +      + ++ G+E  GL +     ++
Sbjct: 267 QAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDPND 312

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +          LNIS A  +++ E    
Sbjct: 313 LRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 261

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL   Q   N+G + RA     +T + +        + K   S+  +   +  +    +L
Sbjct: 116 ILDSLQDPGNLGTLVRAGEGAGITGIIMNESTVDIYNPKVIRSTMGSVFRVPFI-YVKDL 174

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           K+ I +L+      AR  + + S L   E A   +   + G ++  I G E  G++ + +
Sbjct: 175 KDIIEELY------ARKIDIYASSL---EGATEYDAPDYRG-SIAFIIGNEAAGISKDVL 224

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 +  P+     SLN + A  ++++E     
Sbjct: 225 DAVKNKVKIPMLGEVESLNAAVAGSILMYEAARQR 259


>gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 246

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 22/171 (12%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P L N   G  ++L D Q   N+G + R      L  + + +      ++K   S  
Sbjct: 92  PILP-LANLKAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISDKSADIYNQKTLRSMQ 150

Query: 63  NADCVIDSVRVFSN-LKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            +   +    V+   + EA   L      I ATT    +                + +  
Sbjct: 151 GSHFHLP---VWRTNVYEACETLQNLGVPIIATTLSKDSVD-------------YKTVKH 194

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             N  ++ G E  G++N+    ++ +    +     SLN++ A  ++++  
Sbjct: 195 DGNFALVMGNEGNGISNKMTNQADVLAHIIMPGQAESLNVAVATGIVLFSL 245


>gi|72391682|ref|XP_846135.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359056|gb|AAX79504.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802671|gb|AAZ12576.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 391

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 12/138 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL------- 77
             N+G + R+ +   L ++ L +   G  +   RSS+   + +     V   L       
Sbjct: 186 PANVGAIMRSAFFMGLRRIVLSSDSAGCTAAVCRSSAGFMEYMSVYRAVVPTLTFLENTV 245

Query: 78  --KEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             ++A    H   IYAT+   R    +  + +E   V    +   +   ++ G E  GL 
Sbjct: 246 AQQKARDGGHLLEIYATSPMPRRGVTT-CSARELPSVSCGPVNKPRRRLLLLGNEGAGLP 304

Query: 134 NEEIALSNAIISFPVNPL 151
           +E + L       P+ P 
Sbjct: 305 SEVMGLCTHTAHIPLAPE 322


>gi|332670241|ref|YP_004453249.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339279|gb|AEE45862.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 280

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G   R+     +    LV PR   P   ++   S      +   R+     + I +L 
Sbjct: 145 NVGAAFRSAAALGV-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRI-DPWPDGIEEL- 201

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
                  R+     + LA  + A+ L+E +    + + ++ G E  GL    +A S+ ++
Sbjct: 202 -------RSHGFVTASLALADDALTLDELVADPPERLALVLGAEGHGLKPATVAASDLVV 254

Query: 145 SFPVNPLFPSLNISQ 159
             P+     SLN++ 
Sbjct: 255 RIPMAGGVDSLNVAA 269


>gi|255009330|ref|ZP_05281456.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313147083|ref|ZP_07809276.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135850|gb|EFR53210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 253

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 27/171 (15%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDS 70
                + L D Q   N+G + R    F +      +P      + KA  ++      I  
Sbjct: 102 RNSLCLALDDIQDPGNLGTIIRLADWFGIEH-IFCSPNTVDVFNPKAIQATMGG---IAR 157

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+V      A+ +L  +             V         + E+  S   + I+ G E  
Sbjct: 158 VKVHYI---ALPELIHVLG--------NVPVYGTFLDGKNMYEQPLSKNGI-IVMGNEGN 205

Query: 131 GLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIV 174
           G+  E   L N  +  P    +P       SLN++ A  ++  E    + +
Sbjct: 206 GIGAEVEKLVNRKLYIP---NYPQERETSESLNVAIATAIVCAEFRRQAAL 253


>gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
 gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
          Length = 294

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 13/158 (8%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           A+ P ++L+       N+G + R+      +   ++  R    + +  + +  A   ++ 
Sbjct: 142 AEAPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVIGTRHN-SAPETGALAKTASGALER 198

Query: 71  VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  NL + I +L        R       +    E  I        G  V ++ G E
Sbjct: 199 QPYLRMRNLADTIVELQ-------RMGFLVLGLDGEAEQTIETVLEGRKGDPVALVLGAE 251

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             GL  +     + ++       F SLN+S A  + ++
Sbjct: 252 GPGLRQKTKETVDHLVKIDFAGGFGSLNVSNAAAIALY 289


>gi|327405077|ref|YP_004345915.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327320585|gb|AEA45077.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 158

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 70  SVRV----FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             R+    +  L++   ++ +    TA         L   E            +    + 
Sbjct: 56  WARIPYFHYDTLEDLCNNIPYDCCLTAIELTEGAEFLHDFEHP----------KRAIYLL 105

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  GL +  +     +I  P N    SLN++    +++ 
Sbjct: 106 GSEDQGLPDSVLEKCRKVIKLPGN---SSLNVAVTGSIVLH 143


>gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex]
          Length = 476

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECME 170
           + S  ++ ++ G E  GL++    L++      +  P+     SLN   AV ++ +E   
Sbjct: 404 LNSVTSLTLVIGGETHGLSSAAHKLAHEYGGLKVFIPLENKVDSLNAGVAVGILAYEFRR 463

Query: 171 NSIVSSEKNVK 181
             +     + +
Sbjct: 464 LFLQKKVSDTQ 474


>gi|29841334|gb|AAP06366.1| similar to GenBank Accession Number AP001507 tRNA/rRNA
           methyltransferase in Bacillus halodurans [Schistosoma
           japonicum]
          Length = 179

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 25/154 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH- 85
           N G + R+   F ++ + L       PS      S  A   ++S+R +  L + + D+  
Sbjct: 30  NFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGA---MESIRFYR-LTDTVMDMKS 85

Query: 86  ------FIYATTARNRNNFKSVLAP-------KEAAIVLNERIFSGQNVGIIFGRERWGL 132
                  I  T   N+     V  P       +  A   N    S + + +  G E  GL
Sbjct: 86  LSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPLVLALGSESRGL 145

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +   +   + ++  P   +   LN+     ++V+
Sbjct: 146 SENILNSCDLLLRIPGLAIQ--LNL-----IIVY 172


>gi|254457964|ref|ZP_05071391.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
 gi|207085357|gb|EDZ62642.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
          Length = 136

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 27/145 (18%)

Query: 35  MWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVFSNLKEAIADLHFI----Y 88
             N   + L ++ P      EKA   +       D +   V+ +++E            +
Sbjct: 2   CVNAGAS-LHIIKPIAFDIDEKAVRRA--GLDYWDKLDLHVWESIEEFFEKNTITDNAHF 58

Query: 89  ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI--ISF 146
           ATT  ++                      G    I FG E  G+  E I  ++    I+ 
Sbjct: 59  ATTKTDK-------------PYFEAEFKEGD--FIFFGSETAGIP-ENILNAHKEQNITI 102

Query: 147 PVNPLFPSLNISQAVLLMVWECMEN 171
           P+     SLN++ +  +++++ +  
Sbjct: 103 PMTKEGRSLNLAISTGIVLYDAIRQ 127


>gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
           ferrooxydans PV-1]
 gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
           ferrooxydans PV-1]
          Length = 247

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               ++ G E  G+        + +I  P+  +  SLN+S A  + ++E     + +
Sbjct: 191 GATAVVMGSEDKGVRRLVRETCDQLIHIPMPGVVESLNVSVATGVALFEINRQRVTA 247


>gi|326335202|ref|ZP_08201398.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692610|gb|EGD34553.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 242

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 23/157 (14%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSV 71
           +G ++ L + Q   N+G + R    F +  L L + +     + K   +S  +   +  V
Sbjct: 96  EGLILALDNVQDPGNLGTLIRLCDWFGIETL-LCSEQTVDCYNPKVVQASMGS---LSRV 151

Query: 72  RV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            V +  L+  +A                  V         L    F  ++  I+ G E  
Sbjct: 152 EVHYLPLEGFLATCAL-------------PVYVANLEGENLYTTTFP-EDCVIVLGNEAN 197

Query: 131 GLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164
           G++ E  AL+N  I+ P         SLN++ A  ++
Sbjct: 198 GVSPEVAALANGAITIPRFGKLQQAESLNVAMAGGII 234


>gi|262091797|gb|ACY25385.1| rRNA methylase [uncultured actinobacterium]
          Length = 259

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 17/153 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           I L + Q   N G + R+   F +    + +P      S K   S+A +   +  + VF 
Sbjct: 118 IYLSEVQDPGNAGTILRSADAFAM-DAVITSPGSVDMYSPKVVRSTAGS---LWHIPVFE 173

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + +        + A +              E +  L++   SG  +  +FG E  GL+  
Sbjct: 174 SWRLEELLNLGLNAFSLGA-----------EGSKSLSQYQMSGDTLA-VFGNEARGLSTA 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + A S  ++S P+     SLN+S A  ++++  
Sbjct: 222 QNADSIDVVSIPMPGNAESLNLSAAASIVMYHL 254


>gi|296129890|ref|YP_003637140.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021705|gb|ADG74941.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 279

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G   R+     +    LV PR   P   +A   S      +   R+     + IA   
Sbjct: 144 NVGAAFRSAAALGV-DAVLVTPRCADPLYRRAVRVSMGTVFQVPWTRI-DPWPDGIA--- 198

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIALSNAII 144
                T R      + LA  E ++ L+E +    + + ++ G E  GL  E +A  +  +
Sbjct: 199 -----TLRQAGFVTASLALSEDSVPLDELVADPPERLALVLGAEGDGLKPETVAAGDLTV 253

Query: 145 SFPVNPLFPSLNISQ 159
             P+     SLN++ 
Sbjct: 254 RIPMAGGVDSLNVAA 268


>gi|149194690|ref|ZP_01871785.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
 gi|149135113|gb|EDM23594.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
          Length = 200

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 54/161 (33%), Gaps = 13/161 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+  + R     N+ +L   + +    + +    +              +++    ++
Sbjct: 33  PHNLSAIVRTCDAVNVGKLYYRHQKKVKLNNEITMGAHK----WLFTEYVEDIENFYKNI 88

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                        ++ V+   +   +    +   +   I+ G E  G +   I  ++  +
Sbjct: 89  ---------KEKGYQVVVTLLDKDTIDFREVDYTKPTLIVLGNEVDGASEVSIKYADKKV 139

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             P+  +  SLN+S A  ++++E      +    +  + + 
Sbjct: 140 IIPMYGMSQSLNVSVANAVILYEAQRQRSIKGMYDKPQLSQ 180


>gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
          Length = 253

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 87  DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 146

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 147 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 192

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            E  GL+       + ++S P+     SLN S A  +++ E         E   + QN
Sbjct: 193 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 250


>gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis
           carolinensis]
          Length = 382

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 20/164 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKEA 80
           Q   N+G V R+     +  + +        +     +S+ A  V+D   VF   +L   
Sbjct: 229 QDPMNLGAVLRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLD---VFSADDLPGF 285

Query: 81  IA----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           +     +   +  T A          A     +V        +   ++ G E  GL+ E 
Sbjct: 286 LKVKSKEGWEVLGTVA-------HAKAQDGIPVVSCLDFRWMKPTILVLGNEGHGLSPET 338

Query: 137 IALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSS 176
            +L   +++  P     P   SLN+S A  +++       + + 
Sbjct: 339 KSLCRRMLTIAPGRELEPGIESLNVSVAAGILLHSICAQKVKAP 382


>gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum
 gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
          Length = 239

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           +++     V+IL + +   N G + R    F +  +          ++    +S  A   
Sbjct: 84  IKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINY 143

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           I  + V +NL   I +L     ++YAT+      +              E++        
Sbjct: 144 IYMIEV-NNLSNTIKNLQDEGFWVYATSLLKSQPY--------------EKVDYANKTVF 188

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           I G E  G++   +  ++  I   +     SLN+  A  +++
Sbjct: 189 IVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230


>gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
 gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
          Length = 265

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDR 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
 gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
 gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
 gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
          Length = 254

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDR 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           210]
          Length = 324

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 17/177 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQ 183
            E  GL+       + ++S P+     SLN S A  +++ E         E    E+
Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPPGSER 318


>gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 320

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 11/163 (6%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +S+ G ++ L +     N+G V R++  F    + +   R    +  A  +SA     + 
Sbjct: 161 SSSTGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLP 220

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +  +N+  A+                   V+          +       V ++ G E 
Sbjct: 221 VAK-ATNMTRALKQFQ----------KEGYQVVGLDAGGDHTLDTYDGTTPVVVVVGSEG 269

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            GL+       + I+S P+     SLN S A  +++ E     
Sbjct: 270 KGLSRLVSETCDTIMSIPMADNVESLNASVAAGVVLSEFARQR 312


>gi|89889903|ref|ZP_01201414.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7]
 gi|89518176|gb|EAS20832.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7]
          Length = 160

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +     +N   + G E  GLTNE I  S+ +I F   P   SLN++ A  ++++
Sbjct: 94  QEFRHPRNCVYLLGAEDHGLTNEAIEKSHHLIKFDT-PK--SLNVAVAGSIIMY 144


>gi|258654720|ref|YP_003203876.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258557945|gb|ACV80887.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 172

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + L +   + Q   ++ G E+ G+  E +  ++  +  P+     SLN++ A  L+++  
Sbjct: 109 VRLADLPVARQRTVMLLGHEQSGVPPEGLDRADLAVEIPMVGTGHSLNVAVAGSLVLYRL 168


>gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
 gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
          Length = 265

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 22/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-----VFSNL 77
           Q   N+G + R      +  + L        + K   S+  +   +  V+         L
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGNLEEWVDKL 184

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           KE   D+  +Y T   N   +  V  P               +  +I G E  G+  E +
Sbjct: 185 KE--NDVP-VYGTALENGVPYGEV-TP-------------AGSFALIVGNEGNGVRQEIL 227

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A ++  +  P+     SLN++ A  ++ +
Sbjct: 228 AKTDQNLYIPIYGGAESLNVAVAAGILTY 256


>gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 253

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 26/155 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R       + + L        + K   +       I    +  NL     
Sbjct: 118 QDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIK--VINDNL----- 170

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV--GIIFGRERWGLTNEE 136
                   +   R+ FK +  P      LNE        GQ+    ++ G E  G++ E 
Sbjct: 171 --------SGWIRH-FKDMKVPV-FGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEI 220

Query: 137 IALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170
           + +++  +  P  N    SLN++ A  ++++   +
Sbjct: 221 LEMTSINLYIPITNAE--SLNVAVAAGILMFALKK 253


>gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 255

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 11/161 (6%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           Y   +     G  ++L + Q   NIG + R      +  +          + K   S   
Sbjct: 100 YHESIPEKLGGSWLMLDNIQDPGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVVRSMQG 159

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +      VR++S                A N++N            +  + +   +   +
Sbjct: 160 SQF---HVRLYS--------GDLAVWMAAFNKHNVPVYGTELNDQAISYDDVEPTKQFAL 208

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + G E  G++ + +  ++  +  P+N    SLN++ A  ++
Sbjct: 209 VMGNEGNGVSADLLDKTDQNLYIPMNGEAESLNVAVATGIL 249


>gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
 gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
          Length = 259

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  GQ    I G E  G+  E +AL++  +  P+     SLN++ A  ++++
Sbjct: 203 ELPKGQAAAFILGNEGQGVNQELLALTDKNLYIPIYGQAESLNVAIAAGILMY 255


>gi|322492223|emb|CBZ27497.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 517

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 2   TPYAPQLQNSAKGPVI----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
            P A  L +      +    +LV  ++  N+G + RA  +       LVN     P+++ 
Sbjct: 266 PPAARPLHDPFGHHAVRAMLVLVGLRIPSNVGALLRAAADMGYDAAVLVN--CADPTQEK 323

Query: 58  RSSSANADCVIDSVRVFSN 76
              +++   +  ++R++  
Sbjct: 324 VLRASDGTALSPTLRIYET 342


>gi|294628391|ref|ZP_06706951.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
 gi|292831724|gb|EFF90073.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
          Length = 272

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R    L     DL 
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LDRWPGDLE 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
            +     R        L P E A  L+E        V ++ G E  GL+   ++ ++  +
Sbjct: 187 PV-----RAAGFTLLALTPHERAKPLDEVAPHRMDRVALLLGAEGTGLSQRALSAADEWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P++    SLN+  
Sbjct: 242 RIPMSHGIDSLNVGA 256


>gi|153824637|ref|ZP_01977304.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|153828259|ref|ZP_01980926.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|148876213|gb|EDL74348.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|149741855|gb|EDM55884.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 257

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 170 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 213

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255


>gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 415

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     I+ G E  GL+ E + L+       +  PV P   SLN + A  ++++E    
Sbjct: 348 AQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVVPDIDSLNSAMAASILLFEGKRQ 406


>gi|17986753|ref|NP_539387.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|225627988|ref|ZP_03786024.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|237815940|ref|ZP_04594937.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260884279|ref|ZP_05895893.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261222685|ref|ZP_05936966.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261315717|ref|ZP_05954914.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261318155|ref|ZP_05957352.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261755493|ref|ZP_05999202.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261758724|ref|ZP_06002433.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265989186|ref|ZP_06101743.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991600|ref|ZP_06104157.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995438|ref|ZP_06107995.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998649|ref|ZP_06111206.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|265999372|ref|ZP_05466026.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|17982380|gb|AAL51651.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|225617151|gb|EEH14197.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|237789238|gb|EEP63449.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260873807|gb|EEX80876.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260921269|gb|EEX87922.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261297378|gb|EEY00875.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261304743|gb|EEY08240.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261738708|gb|EEY26704.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|261745246|gb|EEY33172.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262553273|gb|EEZ09107.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766551|gb|EEZ12340.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002384|gb|EEZ14959.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093517|gb|EEZ17551.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661383|gb|EEZ31644.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
          Length = 171

 Score = 45.1 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++A   +      ++   +
Sbjct: 16  RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQAAL 70

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +      D        A  +N  + ++     A +        +N  ++FGRE  G+ 
Sbjct: 71  TRHPDWNRFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 ++  +  P+     SLN++ +V +   E +  
Sbjct: 123 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 160


>gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 250

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVN--PRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           Q   N+G + R      +    +V     D + + K   S+  +   +  +R   NL + 
Sbjct: 115 QDPGNLGTMIRTADAAGI-DAVIVGEGSVDAY-NPKVLRSAQGSHFHLPVLR--GNLSDW 170

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I           R + +   V            +  S  +  ++ G E  G+  E +A +
Sbjct: 171 I----------GRLKESKVPVYGTALENAREYTKYESSDSFALLVGNEGNGVNKELLANT 220

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECME 170
            A +  P+     SLN++ A  ++++   +
Sbjct: 221 AANLYIPIFGKSESLNVAVAAGILLYHLRK 250


>gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 260

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +++  + G E  G++ + + +    I  P+     SLN + A  ++++E     
Sbjct: 205 KDIAFVIGNEAAGISKDILDIVEKKIKIPMLGEVESLNAAVAGSILMYEAARQR 258


>gi|172041241|ref|YP_001800955.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852545|emb|CAQ05521.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 286

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +      G  + I+ G E  GLT   +  ++     P+ P   SLN++ A  +  +
Sbjct: 227 VRREQGEGARIAIMVGAEGPGLTEHAMRAADMRAKIPMMPGTDSLNVATAAAIGFY 282


>gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca]
          Length = 366

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 28/185 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLR----------LVNPRDGWPSEKARSSSANADCV 67
           +L   Q   N+G + R+     + ++           LV P     +     +SA A  V
Sbjct: 156 VLERIQDPRNLGALLRSAHFLGVDKIITSGRNRHGRPLV-PTC-PLTPVVSKASAGAMEV 213

Query: 68  IDSVRVFSN------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +D   VFS       L+    +   +  T          +    E  I         +  
Sbjct: 214 MD---VFSTDDLAGFLQAKAREGWLVAGTVG---CPGPEISPSSEIPITSCLEFLWDRPT 267

Query: 122 GIIFGRERWGLTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSE 177
            ++ G E  GL+    A    +++  P     P   SLN+S A  +++            
Sbjct: 268 LLVLGNEGSGLSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLHSICSQRKGFPV 327

Query: 178 KNVKE 182
           +  +E
Sbjct: 328 EGKRE 332


>gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
          Length = 237

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 25/164 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA----------- 64
           V++L   Q   N+G + R      +  + L        S+K   +S+ A           
Sbjct: 74  VLVLERIQDPGNMGSLFRTALAAGVDAILLAG-GAHPLSQKVLRASSGAVFHLPFLRFDG 132

Query: 65  --DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             + +++S  +  +L E ++++ F   TT+ +  + K    P          I   ++  
Sbjct: 133 TEEEILNS--LCKSLYE-LSNVGFKIFTTSSHNKSSKKSSKPYW-------EIDWTKSTA 182

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS-QAVLLMV 165
           +I G E  G+  +     N  I+ P + L  SLN++  AV L++
Sbjct: 183 LILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL 226


>gi|15965575|ref|NP_385928.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307302695|ref|ZP_07582451.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307318543|ref|ZP_07597977.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15074756|emb|CAC46401.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306895883|gb|EFN26635.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306903059|gb|EFN33650.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 153

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 33/156 (21%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                I L  P +  N G + R      L+ + ++ P     S++    +          
Sbjct: 1   MNDLRIALYQPDIPGNTGTILRLAACLGLS-VDIIEPAGFDLSDRNLKRA---------- 49

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK----EAAIVLNERIFSG-------QN 120
                       + +I A T    ++++     +       ++ + +  +         +
Sbjct: 50  -----------GMDYIAAVTMTRHDSWERFETWRSSTGRRLVLASTKAAAPYTRFSFRPD 98

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
             ++FGRE  G+ +     ++A I  P+ P   SLN
Sbjct: 99  DVLLFGRESAGVPDHVHERADARILIPMAPGQRSLN 134


>gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 278

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 16/170 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI- 68
            +++  ++IL D     N+G + R     ++ ++ L        + K   S+A A   + 
Sbjct: 121 PASRPALLILDDLADPGNMGTIMRTALAADVERVLLTPNCVDCFNSKVIRSAAGAHLFLP 180

Query: 69  -DSVRVFSNLKEAIADLHFIYATTARNRNN-FKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +S   +  ++E             R R +  + VL  +  +  +   +       +I G
Sbjct: 181 VESNINWDEIQE-------------RVRAHCQERVLMAEAHSPNVYFDLDLVAPFALIIG 227

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            E  G +    AL+   ++ P      SLN + A  ++++E +    V+ 
Sbjct: 228 NEAHGPSQSARALATIPVAIPQAAGIESLNAAMAAGILLYEAVRQRSVAR 277


>gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 265

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVIRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G    +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAGG-FALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|154147987|ref|YP_001405828.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
 gi|153803996|gb|ABS51003.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter hominis
           ATCC BAA-381]
          Length = 226

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 22/153 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +IL +     NIG + R+ +      + +V+       E    +S+ A   I   R+  +
Sbjct: 86  VILWNLSDIGNIGAIVRSAYALGADAICVVS--KNLQIEGVIRASSGAAYEIKIARI-DD 142

Query: 77  LKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               I +L  I    +A T    +                +    G    +I G E  G+
Sbjct: 143 GAGLINELKQIGFQIFAATMDGEDI---------------KTAKIGAKTALILGSEGEGI 187

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
             + +   +  +S  +   + SLN+S A  ++ 
Sbjct: 188 PQKIVTKCDHSVSIKMKHGWDSLNVSAAFAIIC 220


>gi|221066100|ref|ZP_03542205.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
 gi|220711123|gb|EED66491.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
          Length = 263

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 25/165 (15%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD- 65
            LQ  +    ++L   Q   N+G + R+   F  TQ+  +       S+K   +   A  
Sbjct: 108 ALQAQSGIATVVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHF 167

Query: 66  --CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              ++++  V     +A+  +  +  T++           P   A               
Sbjct: 168 GLHLVEAASVED--VKALQ-VPLVV-TSSHQGTLIHEADLPWPCA--------------W 209

Query: 124 IFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
             G E  G+    + ++   IS   P      SLN++ A  + + 
Sbjct: 210 AMGHEGQGVGEALMEMAQRRISIAQPGGEE--SLNVAAAAAICLH 252


>gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 344

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 14/168 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC--VIDSVRV 73
           +L   Q   N G + R         L +      D +  +  RS++ +     +I  V++
Sbjct: 173 VLSRVQDPGNAGTILRVADAAG-ADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVQL 231

Query: 74  FSNLKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIF------SGQNVGII 124
               ++  +    + A     A N        A + A +  +            +    +
Sbjct: 232 EDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKPTMWL 291

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           FG E  GL  EE A +   ++ PV     SLN+  A  + ++      
Sbjct: 292 FGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQ 339


>gi|239979522|ref|ZP_04702046.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces albus J1074]
          Length = 277

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P    NIG + R+   F    + +          K+  ++  +   + +VRV  +  E 
Sbjct: 125 RPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRV-PSPAEV 183

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +A +        R       ++A  E            Q V ++ G E  GL      + 
Sbjct: 184 MAWVER-----RRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVC 238

Query: 141 NAIISFPVNPL 151
           +  +S P+   
Sbjct: 239 DVTVSIPMAGA 249


>gi|160358655|sp|A4QNL8|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1
 gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     I+ G E  GL+ E + L+       +  PV P   SLN + A  ++++E    
Sbjct: 348 AQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVVPDIDSLNSAMAASILLFEGKRQ 406


>gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 274

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANADCVIDSVR 72
           VI++       N+G + R+   F    L      +P++     KA   ++ A  +I  + 
Sbjct: 127 VIVMDQITDPHNVGAIMRSAVAFKAEALITTYRHSPQESGVLAKA---ASGALEMIHYIT 183

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           V  NL E + +LH     +    +     L          E   +G+ + ++ G E  GL
Sbjct: 184 V-QNLAETLQELHKAGFISFGLDSEGNHPL----------ETTLTGEKIALVLGAEGKGL 232

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             +      A+    +     SLN+S A  + ++   +
Sbjct: 233 RKKTRENVCALTRLDMPGNIKSLNVSNAATIALYAAHK 270


>gi|313159202|gb|EFR58575.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 251

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 31/183 (16%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +++ A    + L D Q   N+G + R    F +  +          + K   ++  A  
Sbjct: 89  DMRSLAGRLTLALDDVQNPGNLGTIVRLADWFGIADIVCSEASADCFNPKVVQATMGA-- 146

Query: 67  VIDSVRVFSNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           ++     +++L   + D       +Y T     N + + L                +   
Sbjct: 147 ILRVRVHYTDLGAFLHDAGAAGLPVYGTFLEGENIYGTTLT---------------EEGV 191

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIVS 175
           ++ G E  G++          +  P    +P       SLN++ A  ++  E    + + 
Sbjct: 192 VVMGNEGRGISQAAARAVTHKLFIP---PYPTDRRGSESLNVAMATGIVCSEFRRRAGMG 248

Query: 176 SEK 178
           S K
Sbjct: 249 SGK 251


>gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4]
          Length = 281

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 20/148 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R      +T + L        + K   +S  +  +     +  +L E + 
Sbjct: 146 QDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRASQGS--IFHMPVIRGSLIEWVE 203

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      ++ T+    +++                I       +I G E  G+ +E + 
Sbjct: 204 KLKEKNIPVFGTSLTEASSY--------------TAIEPQPEFALIVGNEGEGVQSELLE 249

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            S+  I  P+     SLN++ A  ++++
Sbjct: 250 GSDQNIYIPIYGQAESLNVAVATGILLY 277


>gi|237713266|ref|ZP_04543747.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406593|ref|ZP_06083142.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647301|ref|ZP_06724896.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294809639|ref|ZP_06768330.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446733|gb|EEO52524.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355296|gb|EEZ04387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637377|gb|EFF55800.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294443158|gb|EFG11934.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
          Length = 254

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 25/157 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  +          + K   ++      I  V+V      ++ 
Sbjct: 113 QDPGNLGTIIRLADWFGIEHIICSQNTVDVYNPKTIQATMGG---IARVKVHYT---SLP 166

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D       T         V         + E+  +   + I+ G E  G+  E   L N 
Sbjct: 167 DFIRSLGDT--------PVFGTFLDGKNMYEQPLTANGL-IVMGNEGNGIGKEVATLINR 217

Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            +  P    +P       SLN++ A  ++  E    +
Sbjct: 218 KLYIP---NYPAGQETSESLNVAIATAVICAEFRRQA 251


>gi|162448639|ref|YP_001611006.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
           ce 56']
 gi|161159221|emb|CAN90526.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
           ce 56']
          Length = 508

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 13/151 (8%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             + +  P    N   V R+   F L +L ++   + +      S    ++  +D VR  
Sbjct: 57  VTVAMDAPHDPHNGAAVLRSCDAFGLQRLHIIERAEQFLVSNTVSR--GSERWVD-VRTH 113

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++ + A+A+L          R +   ++A      +    + S   + ++ G ER G+  
Sbjct: 114 ASTEAAVAEL----------RASGHELVATHPEGELTPRDLSSIPRLALVLGNERDGIRP 163

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           +  A     +  P+     SLN+S    +++
Sbjct: 164 DLAAACARAVRVPMRGFAESLNVSVTAAILL 194


>gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
 gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN R506]
 gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN V2475]
 gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           Rv3579c/MT3685
 gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618
 gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis
           H37Rv]
 gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
 gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium
           tuberculosis F11]
 gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 322

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            E  GL+       + ++S P+     SLN S A  +++ E         E   + QN
Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 319


>gi|329954919|ref|ZP_08295936.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328527023|gb|EGF54034.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 253

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 29/161 (18%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FSNLKEA 80
           Q   N+G + R    F +      +P      + K   ++      I  V++ +++L E 
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDVYNPKTVQATMGG---IARVKLHYTSLPEL 167

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I  L                V         +  +  S   + I+ G E  G+ NE   L 
Sbjct: 168 IGSL------------KDIPVYGTFLDGANMYTQPLSAHGL-IVMGNEGNGIGNEVEQLI 214

Query: 141 NAIISFPVNPLFPS-------LNISQAVLLMVWECMENSIV 174
           N  +  P    +PS       LN++ A  ++  E    + +
Sbjct: 215 NRKLYIP---NYPSERETSESLNVAIATAVVCAEFRRQAAL 252


>gi|304392671|ref|ZP_07374611.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130]
 gi|303295301|gb|EFL89661.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130]
          Length = 210

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               + G E   L+ + +     II  P       LN++ A  +++++ M++    +E+ 
Sbjct: 97  RAAYLLGPENGSLSPDAMEKCEFIIKIPTA---FCLNVATAGAVIMYDRMQSLGRFAERP 153

Query: 180 VKEQNTPATKGELLSFLDYL 199
           V+     +T         +L
Sbjct: 154 VRAGGPVSTHTA--PMATHL 171


>gi|291451390|ref|ZP_06590780.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291354339|gb|EFE81241.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 286

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P    NIG + R+   F    + +          K+  ++  +   + +VRV  +  E 
Sbjct: 134 RPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRV-PSPAEV 192

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +A +        R       ++A  E            Q V ++ G E  GL      + 
Sbjct: 193 MAWVER-----RRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVC 247

Query: 141 NAIISFPVNPL 151
           +  +S P+   
Sbjct: 248 DVTVSIPMAGA 258


>gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
           bacterium GD 1]
 gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
           bacterium GD 1]
          Length = 226

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 59/149 (39%), Gaps = 13/149 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       NIG + R  +   +  +     +        R+S+     +  +++   
Sbjct: 85  VLVLSGLTDVGNIGAIVRTAYALGVEAIVACGIKKLNFEPVMRTSTGALFDMPFALQ--H 142

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+ + + DL     T+         +         + + +   Q   ++ G E  GLT+ 
Sbjct: 143 NIHDVMNDLK----TSG------FCIYGADMGGTDIRD-VKIKQKRALVLGNEGEGLTSR 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLM 164
            ++  + ++S  ++  F SLN+S A  ++
Sbjct: 192 IVSKLDEVVSIQMSHDFDSLNVSVAGAIL 220


>gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
 gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
 gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
 gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
 gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
 gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
          Length = 265

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDR 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|110806525|ref|YP_690045.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|110616073|gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 345

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRMKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 253

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 26/155 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R       + + L        + K   +   +   I    +  NL     
Sbjct: 118 QDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIK--VINDNL----- 170

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNV--GIIFGRERWGLTNEE 136
                   +   R+ FK +  P      LNE        GQ+    ++ G E  G++ E 
Sbjct: 171 --------SGWIRH-FKDMKVPV-FGSELNEHAREYTNVGQHTDFALVMGNEGNGISKEI 220

Query: 137 IALSNAIISFP-VNPLFPSLNISQAVLLMVWECME 170
           + +++  +  P  N    SLN++ A  ++++   +
Sbjct: 221 LEMTSINLYIPITNAE--SLNVAVAAGILMFALKK 253


>gi|304382953|ref|ZP_07365435.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
 gi|304335978|gb|EFM02226.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
          Length = 278

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 24/156 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +T L          +  A            + +V      +IA
Sbjct: 138 QDPGNLGTIIRIADWFGITTLF-----CSPDTADAY-----------NPKVVQATMGSIA 181

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLTNEEIAL 139
            +  +Y T  ++  +      P    ++  E I+     +N  I+ G E  GL+    + 
Sbjct: 182 RVRLVY-TDLKDLLDALHPDTPVYGTLLNGEDIYQQSLSRNGLIVMGNEGKGLSKAIASR 240

Query: 140 SNAIISFPV----NPLFPSLNISQAVLLMVWECMEN 171
               +  P      P   SLN++ A  ++  E    
Sbjct: 241 VTHRLLIPSFPTEKPTAESLNVAIATAVVCAEFRRR 276


>gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
 gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
          Length = 270

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 24/163 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +T +          +  A            + +       +IA
Sbjct: 123 QDPGNLGTIIRIADWFGITDIV-----CSEDTADAY-----------NPKTVQATMGSIA 166

Query: 83  DLHFIYA-TTARNRNNFK--SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
               +Y   +A   +      V         + E+  +   V II G E  G++ E    
Sbjct: 167 RTKIVYTDLSAYLESLPNETPVYGTMLDGTDIYEQSLTHHGV-IIMGNEGKGISKEITRY 225

Query: 140 SNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            N  +  P      P   SLN++ A  +   E    S++   +
Sbjct: 226 INHRLFIPGYPKDRPSAESLNVAIATAITCAEFRRRSLLEDTR 268


>gi|317507017|ref|ZP_07964783.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254684|gb|EFV13988.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 105

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 17/98 (17%)

Query: 92  ARNRNNFKSVLAPKEAAIVLNERIFSGQ------------NVGIIFGRERWGLTNEEIAL 139
           AR R+    V A + A + L      G+                +FG E  GL       
Sbjct: 7   ARERDVAAGVAALRTAGLRLFATTADGELPLGRAGSELSGPCAWLFGNEAHGLPEPVARA 66

Query: 140 SNAIISFPVNPLFP-----SLNISQAVLLMVWECMENS 172
           ++  ++ P+ P        SLN++ A  + ++E     
Sbjct: 67  ADHRVAVPMRPAAGFAPPESLNLAVAAGICLYETARLR 104


>gi|254994521|ref|ZP_05276711.1| hypothetical protein LmonocytoFSL_17202 [Listeria monocytogenes FSL
           J2-064]
          Length = 113

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 22/124 (17%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5   IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74  FSNLKEAI---ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           + +L E         F Y T        + V +         +     ++   +FG+E  
Sbjct: 61  YDSLDEFFEKNEGGEFYYIT-----KFGRHVYS-------DIDYSDPNKDYFFVFGKETT 108

Query: 131 GLTN 134
           GL +
Sbjct: 109 GLPD 112


>gi|38233380|ref|NP_939147.1| putative methyltransferase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199640|emb|CAE49299.1| Putative methyltransferase [Corynebacterium diphtheriae]
          Length = 298

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNAIISFP 147
           R+       L P   A  L + +          V ++ G E  GLT   +  ++     P
Sbjct: 213 RDAGFHIVSLTPNPQADHLADALVDANGAPYAKVALLVGAEGPGLTEHAMRATDQRARIP 272

Query: 148 VNPLFPSLNISQAVLLMVWE 167
           +     SLN++ +  +  +E
Sbjct: 273 MASGTDSLNLATSAAIAFYE 292


>gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1]
 gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila
           SL1]
          Length = 271

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 30/83 (36%)

Query: 95  RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPS 154
           R+    V+     A      +     + ++ G E  GL        +  ++ P+     S
Sbjct: 186 RDAGVHVVGAAGEAEKSCYEVDLRGPLALVLGGEGEGLRRLTRERCDERVAIPMPGSMES 245

Query: 155 LNISQAVLLMVWECMENSIVSSE 177
           LN+S A  ++++E +        
Sbjct: 246 LNVSVAAGVLLFEAVRQRFPQGG 268


>gi|220926822|ref|YP_002502124.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219951429|gb|ACL61821.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 154

 Score = 45.1 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L  P + +N G + R         + ++ P     S++    S      +D V +     
Sbjct: 6   LFQPDIPQNTGTMLRLAACLGAA-VEIIEPAGFDVSDRHLRRS--GLDYLDHVTIT---- 58

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                  F  A  A  R     ++    A  +    +  G +  ++ GRE  G+     A
Sbjct: 59  ---RHCSFS-AFEAWRREAGLRLVLATTAGALPYTDLAYGPDDCLLVGRESAGVPEAVHA 114

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++A +  P+     SLN++ A  +++ E M  +
Sbjct: 115 AADARVVIPLRAGLRSLNVAVAAAMILGEAMRQT 148


>gi|312214449|emb|CBX94441.1| hypothetical protein [Leptosphaeria maculans]
          Length = 584

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP----VNP-LFPSLNISQAVLLMVWECMENSI 173
               ++ G E  GL    + L++  +  P    VN     SLN+S A  L+ +E ++   
Sbjct: 513 HPTILMMGAESSGLQKSLLRLAHYNVGIPHGRDVNEVGVDSLNVSVAASLLCYEMLQRPR 572

Query: 174 VSSE 177
              +
Sbjct: 573 TQPD 576


>gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 595

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 49/210 (23%)

Query: 1   MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +    P L    KGP+ + L +    +N+G + R+ + F ++ + L        S     
Sbjct: 387 IKELDPVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSK 446

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL----APKEAAIVLNERI 115
           +SA +  +++ +R   N+ + +        T+  +  N   VL    +P+  AI LNE I
Sbjct: 447 ASAGSLELME-LRFCKNMMQFL--------TS--SAENGWQVLGGSVSPR--AIPLNE-I 492

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN------------------------PL 151
             G    ++ G E  GL          +I  P N                          
Sbjct: 493 SPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPVHVTAGEVEDVDTSEMDRRCLTED 552

Query: 152 FP------SLNISQAVLLMVWECMENSIVS 175
           F       SLN+S A  +++   + NS  +
Sbjct: 553 FQSFLAVESLNVSVAAGVLLHHLVGNSYEN 582


>gi|226324182|ref|ZP_03799700.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
 gi|225207731|gb|EEG90085.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
          Length = 159

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
            K  +++L + Q   N+G + RA     +T + + +      + K   S+  +   +  V
Sbjct: 9   RKPLLMVLDNLQDPGNLGTILRAGEAAGVTGVIMSHDCVDIYNPKVIRSTMGSVYRMPFV 68

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               +L E +     + A             A         ++    +    + G E  G
Sbjct: 69  -YVEHLPETLE----VLA------EAGIHSYAAHLKGKNSYDQEDYTRGTAFLIGNEGNG 117

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           L +E   ++   I  P+     SLN + A  ++++E     
Sbjct: 118 LRDEVADVAECYIKIPMCGEVESLNAAVASSVLMFEAARQR 158


>gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 333

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 14/168 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLV--NPRDGWPSEKARSSSANADC--VIDSVRV 73
           +L   Q   N G + R         L +      D +  +  RS++ +     +I  V++
Sbjct: 162 VLSRVQDPGNAGTILRVADAAG-ADLVITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVQL 220

Query: 74  FSNLKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIF------SGQNVGII 124
               ++  +    + A     A N        A + A +  +            +    +
Sbjct: 221 EDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDLSKPTMWL 280

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           FG E  GL  EE A +   ++ PV     SLN+  A  + ++      
Sbjct: 281 FGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQ 328


>gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
 gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
          Length = 270

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 20/166 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
             N  +G ++IL   Q   N+G + R      +  +  +       + K   +S  A   
Sbjct: 111 FHNRNRGIILILDRIQDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGA--- 167

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-----ERIFSGQNVG 122
                +F ++   +  + F      R +         K     LN       I   + + 
Sbjct: 168 -----IF-SIP-ILTGVSF-----KRLQKIRDEYPDYKLICTDLNTSKFYHEIDYQEPLM 215

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++ G E  G+  E ++L++  I  P+     SLN + +  +++++ 
Sbjct: 216 LVIGNEARGIREELLSLADIKIKIPLMGNIDSLNAAVSTAIVLYDI 261


>gi|313902051|ref|ZP_07835464.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467660|gb|EFR63161.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
          Length = 286

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%)

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           V   +  A      +   +   ++ G E  G++      +   ++ P+     SLN++ A
Sbjct: 198 VWVAEAGAATACWDVDWRRPALLVVGNEGAGVSPAVAGQATGRVAIPLAGGIGSLNVAMA 257

Query: 161 VLLMVWECMENSIVSSEKNVKEQNTPA 187
             ++++E    +  S       Q   A
Sbjct: 258 GTILLYEAARQAANSGSGPGTGQGAGA 284


>gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426]
          Length = 251

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R   +  +  + L        + K   ++  +   +    V  +L + I 
Sbjct: 114 QDPGNLGTMIRTADSAGIDAVILGEGCADLYNPKVVRATQGSLFHLP--VVKGDLAQWI- 170

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    AR +     V        V    +    +  ++ G E  G+  + + L+  
Sbjct: 171 ---------ARFKEQGIPVYGTALENAVDYRTVPQSSSFALLVGNEGSGVRPDLLRLTTE 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECM 169
            +  P+     SLN++ A  ++++   
Sbjct: 222 NVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1]
          Length = 295

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E   V   +I   +    + G E  G++ +     + I++ P+     SLN S AV + +
Sbjct: 217 EHGAVPLPKITFDRPTVFVVGSEGEGISLQTQKHCDEIVAIPLAGRTNSLNASVAVGIAL 276

Query: 166 WECMENSIVSSEKNVKEQN 184
           +E       + +   + + 
Sbjct: 277 YEINCQRSPAWDLTQEPRG 295


>gi|256830493|ref|YP_003159221.1| TrmH family RNA methyltransferase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579669|gb|ACU90805.1| RNA methyltransferase, TrmH family, group 3 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 251

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              ++ G E  G+          ++S P+   F SLN++QA  +++ E +   +
Sbjct: 198 PAVLVLGNEDKGMRPNVGKRCTEMLSIPMQGGFDSLNVAQAGAMIMTEMLRQRL 251


>gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog
           [Oryctolagus cuniculus]
          Length = 346

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N+G V R+     + +  + + R   P +     +SA A  V+D   VFS 
Sbjct: 152 VLDGLQDPRNLGAVLRSAHFLGVDK-VITSRRSSCPLTPVVSKASAGAMEVMD---VFST 207

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPK--------EAAIVLNERIFSGQNVGIIFGRE 128
                 DL       AR        + P         E  +         +   ++ G E
Sbjct: 208 -----DDLAGFLQARARQGWLVAGAVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNE 262

Query: 129 RWGLTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVWECMENSIVSSE 177
             GL+ E  A    +++  P     P   SLN+S A  +++            
Sbjct: 263 GSGLSQEVQASCRCLLTILPGRQLPPGLESLNVSVAAGILLHAICSQRKALPA 315


>gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 250

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           ++ G E  G++       + ++  P+     SLN S A  L+++E +    + +EK
Sbjct: 195 LVIGNEGKGISRLVKENCDILVQIPMFGHVNSLNASVAAALLIYETVRQRGIGTEK 250


>gi|254285517|ref|ZP_04960481.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|150424379|gb|EDN16316.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
          Length = 257

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 170 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHKTAFKAEGI-LLMGSES 213

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255


>gi|90419031|ref|ZP_01226942.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337111|gb|EAS50816.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 297

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 15/176 (8%)

Query: 3   PYAPQLQNSAKG-PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSS 60
           P A     +A G P+II V     +N+G + R    F      L +     P   KA   
Sbjct: 135 PSAADTIAAAGGRPIIIAVGLSNHDNLGAIFRNAAAFGAGA-VLCDTTSCHPLYRKALRV 193

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           S      +   R     +  +A          R        L+P     +    + +   
Sbjct: 194 SVGTALTVPWCR-EGTGESLVAAC--------RAAGYRVLALSPAGETPLAG--LVTAGR 242

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  G E  GL+ + +  +   +   + P   SLN++ +  +++         ++
Sbjct: 243 TALCLGAEGQGLSPD-LMRAVETVRIEMAPGLDSLNVATSAAIVLHRLFAGEGTAA 297


>gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 255

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 65/168 (38%), Gaps = 27/168 (16%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           Q  +   G  ++L + Q   NIG + R       T +   +    + + K   +   +  
Sbjct: 103 QFPDDLSGKWLVLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPKILRAMQGSQY 162

Query: 67  VIDSVRVFSNLKEAIADL----HFIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSG 118
            +   R+  NL++ I +       I+ +     AR+   ++ +  P +            
Sbjct: 163 HLQLKRL--NLEKWIRNCKDQGSVIFGSILDENARD---YRKIDVPDQF----------- 206

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               +I G E  G++   I +++  +  P+     SLN++ A  ++++
Sbjct: 207 ---SLIMGNEGNGMSERLIEMTDMNLYIPIKGSAESLNVAVAAGVLMF 251


>gi|71908729|ref|YP_286316.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
 gi|71848350|gb|AAZ47846.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
          Length = 164

 Score = 45.1 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 20/152 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L +P+  EN+G + RA   + +           + + K    +   +   D+ +V  
Sbjct: 20  CIGLYNPKGPENVGSIMRAAGCYGVN--------TVFYTGKRYERAV--EFRTDTKQVHL 69

Query: 76  NLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            L    + DL  +              +     A  L E     +    IFG E   L  
Sbjct: 70  QLPLIGVEDLQQVI-----PFGCVPVAIEVHPDAKPLTEYQHP-ERAFYIFGPEDGSLKK 123

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              +    I+  P +     +N++  V ++++
Sbjct: 124 NVTSWCKDIVYIPTHGC---MNLAATVNVVLY 152


>gi|157374781|ref|YP_001473381.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3]
 gi|157317155|gb|ABV36253.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3]
          Length = 177

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 64/153 (41%), Gaps = 23/153 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G + RA       +   V+  + + + K    +A+      + +  ++ K
Sbjct: 10  LVNPKSPTNVGGIMRAA---GCYR---VD--EVFYTGKRYPLAASNG----TAQYNTDTK 57

Query: 79  EA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            A     ++ +  +    A         +   E AI L E     + +  +FG E   ++
Sbjct: 58  GAGQQIPLSGVESLI--DAGPDGVKIICVDLVEGAIPLPEFEHPAKAI-YVFGPEDGTIS 114

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + I  ++A++  P       +N++ +V ++++
Sbjct: 115 QQVINRADAVVYVPT---VGCMNLAASVNVLLY 144


>gi|237751640|ref|ZP_04582120.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
 gi|229373006|gb|EEO23397.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
          Length = 235

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 29/157 (18%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS---EKARSSSANADCVIDSVRV 73
           ++L       NIG + R  +   +  + + + RD   +   E    SS+ A  +++    
Sbjct: 86  VVLCGMSDIGNIGAIVRTAYALGIGGIVISD-RDTLNTQALEGIFRSSSGA--LLNMPFS 142

Query: 74  F--SNL----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           F  S+L    +  +     I A       N K++L              +     I  GR
Sbjct: 143 FHKSSLSVANEAKMKQFTLIGA-----GKNNKNILE------------STPNKWAIFIGR 185

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           E  GL  + +   +  +   +   F SLN S A  ++
Sbjct: 186 EDTGLPQKLLNKLDYALHIAMCNGFDSLNASVAAGIL 222


>gi|269955140|ref|YP_003324929.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303821|gb|ACZ29371.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 272

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 6/160 (3%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L  P    N+G + R+   F      +V      P +     +         V    +
Sbjct: 119 VVLDRPTQPGNVGSIIRSADAFGAHG-VIVTGHGADPYDPRAVRATTGSLFAVPVVRAPS 177

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +E +     + A   R      +V+A  E   V    +     V ++ G E  GLT   
Sbjct: 178 HREVL---DQVAA--WRAAGTPVTVVATDEDGDVDIAGVDLTGPVLLLVGNETAGLTRAW 232

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              ++A+ S P+     SLN + A  ++++E      V  
Sbjct: 233 RESADAVASIPMVGAASSLNAANAASVVLYEARRQRAVPR 272


>gi|182677154|ref|YP_001831300.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633037|gb|ACB93811.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 179

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 11/165 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +   +    ++ L  P + +N G + R      + +  ++ P     S++    +     
Sbjct: 11  ERPEAKPSLMLALYQPDIPQNCGTMLRLCACLGV-EAAIIEPAGFPVSDRHFRRA--GMD 67

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +D V        A++      A  A      + ++     A           +  ++ G
Sbjct: 68  YLDQV--------ALSRHVSFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMG 119

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           RE  G+     A ++A +  P+ P   SLN++ A  +++ E +  
Sbjct: 120 RESAGVPEAVHASADARVVIPLRPPMRSLNVAVAAAMVLGEALRQ 164


>gi|157144486|ref|YP_001451805.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157081691|gb|ABV11369.1| hypothetical protein CKO_00203 [Citrobacter koseri ATCC BAA-895]
          Length = 348

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 18/150 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKEAI 81
             N+G + R+  +F +    +V       S  A  ++   A+ V  I    +   L +  
Sbjct: 211 PHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFR 269

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
              + I  T++   +  K + +    A            + ++ GRE   L        +
Sbjct: 270 QAGYTIVTTSS---DQGKPLFSTALPA-----------KMVLVLGRELESLPEAAREPGD 315

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             +         +LN+S A  +++ E    
Sbjct: 316 LCVKIDGTGNVENLNVSVATGVLLGEWWRQ 345


>gi|333030523|ref|ZP_08458584.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332741120|gb|EGJ71602.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 252

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 27/158 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81
           Q   N+G + R    F +  +          + K   ++      +  V++ +++L E I
Sbjct: 112 QDPGNLGTIIRLADWFGIEHIYCSQDTVDIYNTKTIQATMGG---LARVKIHYTSLTEII 168

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                        +N    +         + ++    + + II G E  G+++E   L +
Sbjct: 169 K------------QNPNIPIYGTFLDGENIYDKQLEQKGL-IIMGNEGKGISDELQELVS 215

Query: 142 AIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
             +  P    +P       SLN++ A  ++  E    +
Sbjct: 216 HKLYIP---NYPMNKESAESLNVAIATAIVCSEFRRQA 250


>gi|163796242|ref|ZP_02190203.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159178384|gb|EDP62926.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 153

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 21/167 (12%)

Query: 18  ILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           +L  P + +N G + R  A     +    ++ P     SE     +      ++   V  
Sbjct: 4   VLFQPDIPQNAGTILRLAACVGVGVD---IIEPCGFVWSEPRLRRA--GMDYLEFATVAR 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            S+ +  +A            R+  +  L     A  L +  F   +  ++ GRE  G+ 
Sbjct: 59  HSSWEAFLA-----------ARSPGRLALLTTRGATPLPDARFENDDH-LVLGRESAGVP 106

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           +     ++  +  P+ P   SLN++    +++ E +  +        
Sbjct: 107 DALHTAADLAVRVPMVPGARSLNVAVTAGMVLAEALRQTAGWPAAPA 153


>gi|83815691|ref|YP_445907.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|294507817|ref|YP_003571875.1| methyltransferase [Salinibacter ruber M8]
 gi|83757085|gb|ABC45198.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|294344144|emb|CBH24922.1| methyltransferase [Salinibacter ruber M8]
          Length = 187

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 62/186 (33%), Gaps = 16/186 (8%)

Query: 3   PYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P   ++    K PV +++ + +   N+G + R      +  + L         +    ++
Sbjct: 12  PAPEEIPTLPKHPVRLVVHNVRSIHNVGSMFRTSDAARIEHIHLTGFTGTPEHKDLHKTA 71

Query: 62  ANADCVIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             A   ++  +       L++ + D  +  A   +  +  +   AP              
Sbjct: 72  LGAQDAVEWSQHDEPRPLLRD-LKDAGYTIAALEQTDHTQRPDAAP-----------ADA 119

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + ++ G E  G+  + +   +  +  P      SLN+  A  + V++ +  S      
Sbjct: 120 FPIALVVGNEVRGIEPDVLDAVDLALEIPQYGAKISLNVGVAYGIAVYDLIRRSRTLLGP 179

Query: 179 NVKEQN 184
              E  
Sbjct: 180 PGDEDR 185


>gi|229530071|ref|ZP_04419461.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
 gi|229333845|gb|EEN99331.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
 gi|327483584|gb|AEA77991.1| RNA methyltransferase, TrmH family [Vibrio cholerae LMA3894-4]
          Length = 244

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|124802753|ref|XP_001347584.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23495166|gb|AAN35497.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 257

 Score = 45.1 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 19/143 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R+   FN+ ++ +V  R     E     +      I ++  F N+ E + +   
Sbjct: 65  NVGCIVRSCVAFNVHKIFIVGKRKK---EINFFGNMGTYDYI-TIEYFDNIYE-LKEY-- 117

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                    +           A+ +    +  ++   +FG E  G+ +  + + + II  
Sbjct: 118 -----LTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTGIHDNVLKICDKIIYI 172

Query: 147 PVNPLFP----SLNISQAVLLMV 165
           P    +     SLN+S +  +++
Sbjct: 173 P---QYGKGTASLNVSVSCAIIL 192


>gi|297588550|ref|ZP_06947193.1| rRNA methylase [Finegoldia magna ATCC 53516]
 gi|297573923|gb|EFH92644.1| rRNA methylase [Finegoldia magna ATCC 53516]
          Length = 243

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 20/143 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI----DSVRVFSNLKEA 80
             N+G + R+   F    + L +      + K   S+  +   I    +S+ V  N K  
Sbjct: 107 PGNLGTIIRSAEAFGYNNIILSDNSCDIYNLKTIRSAMGSLFRINISYESIHVLENYKS- 165

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                          N FK      E        I   +   +I G E  G+++E    +
Sbjct: 166 ---------------NGFKIYETSLEKNSKSILEIKDKEKHVLIIGNEANGISDEIKKYA 210

Query: 141 NAIISFPVNPLFPSLNISQAVLL 163
           +  +  P++ +  SLN S A  L
Sbjct: 211 DEFLIIPMDNVTESLNASIAASL 233


>gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 257

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 60/169 (35%), Gaps = 13/169 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSS 61
           P A ++  + +G  ++L   Q   N+G + R           +V  R       K   S 
Sbjct: 98  PDAHRVPANIQGAWLLLDRVQDPGNVGTMVRTADAAGFAG-VVVGNRSADLFGPKVVRSM 156

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   +    +  +L + + D   I A                  A     ++  G   
Sbjct: 157 QGSQFHL--TLLEGDLHKWVQDFKRIGA---------PVYGTQLNPAAQNFRKVHPGPTF 205

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +I G E  G+  + +A +   +  P+     SLN++ +  +++++  +
Sbjct: 206 ALIMGNEGQGMAADLLAETTTNLYIPMRGDAESLNVAVSAGILMFQLNQ 254


>gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
 gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
          Length = 265

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 22/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-----VFSNL 77
           Q   N+G + R      +  + L        + K   S+  +   +  V+         L
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVKGNLEEWVDKL 184

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           KE   D+  +Y T   N   +  V  P               +  +I G E  G+  E +
Sbjct: 185 KE--NDVP-VYGTALENGVPYGEV-TP-------------AGSFALIVGNEGNGVRQEIL 227

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +N  +  P+     SLN++ A  ++ +
Sbjct: 228 AKTNQNLYIPIYGGAESLNVAVAAGILTY 256


>gi|198419564|ref|XP_002121605.1| PREDICTED: similar to TAR RNA binding protein 1 [Ciona intestinalis]
          Length = 1848

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 11/158 (6%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAIAD 83
              N+G + R    F   Q+ +V+       +  +S S  A   +    V    L+E +  
Sbjct: 1700 PSNLGGLTRTCEVFGAEQM-IVHSLSCTSDKLFQSLSVTAHKWLKMSEVKRWELEEYLES 1758

Query: 84   LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
            +          R  +  V   +    V            I+ G E+ G+    + + +A 
Sbjct: 1759 M---------KRQGYALVATEQTEQSVCLTEYKFPPKCVILLGNEKEGIPPNLLRMCSAC 1809

Query: 144  ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            I  P   +  SLN+  +  + VWE     ++   ++ K
Sbjct: 1810 IEIPQVGVVRSLNVHVSGGITVWEFTRQKLLRLSQSTK 1847


>gi|33322913|gb|AAQ07193.1|AF496501_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 115

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + ++L +AIA L       A +   + S+L P   A            V +I G E  G+
Sbjct: 28  IKADLPDAIASLK------AADIPVYASLLDP---AAKQLGDFAPVAQVALIIGNEAHGV 78

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + E  AL++  +  P+     SLN + A  +M++
Sbjct: 79  SPEIAALADEKLYIPIKGRAESLNAAVAAGIMIY 112


>gi|262192463|ref|ZP_06050614.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
 gi|262031622|gb|EEY50209.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
          Length = 244

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis]
 gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis]
          Length = 301

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 40/192 (20%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68
           S    V+ L + Q   N G + R  W   + +  +V P+      S     +SA A  V 
Sbjct: 125 SLHPLVLALDEIQDPMNFGAIIRTSWLLGVDK--IVVPKQNSAPLSPVVSKASAGAMEVF 182

Query: 69  DSVRVFSN------LKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +   V+        L+E A      + A         + +        V        +  
Sbjct: 183 N---VYQTPDLPKFLQERAAIGWDVLGA--------VQPITDDSHHRPVNCAEYSLSKPT 231

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFP-------------SLNISQAVLLMVWEC 168
            ++ G E  GL N        ++S      +P             S N+S A  ++V+  
Sbjct: 232 VLVLGNEGRGLRNTVQQQCTQLLSI-----YPHQAQNSFQSIDLDSFNVSVAAGILVFSL 286

Query: 169 MENSIVSSEKNV 180
           ++NS  + EKN+
Sbjct: 287 LKNSYSTQEKNL 298


>gi|302864970|ref|YP_003833607.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302567829|gb|ADL44031.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 275

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++   P+   NIG + R+   F  + + +          KA  ++  +   +  VRV  
Sbjct: 120 VVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRV-P 178

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + ++ +    ++ A  A +      ++   E   V            ++ G E  GL+  
Sbjct: 179 SHRDVL---DWVAAVRA-DGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKG 234

Query: 136 EIALSNAIISFP 147
               S+ ++  P
Sbjct: 235 WQEASDRMVRIP 246


>gi|270668311|ref|ZP_06222520.1| RNA methyltransferase, TrmH family [Haemophilus influenzae
          HK1212]
 gi|270316702|gb|EFA28486.1| RNA methyltransferase, TrmH family [Haemophilus influenzae
          HK1212]
          Length = 110

 Score = 44.7 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
          I+L +P++ +N G + R   N    +L L+ P      +K    S       +   +   
Sbjct: 4  IVLYEPEIPQNTGNIIRLCANTGF-RLHLIEPLGFTWDDKRLRRS--GLDYHEFAEIKRH 60

Query: 75 SNLKEAIA 82
             +  + 
Sbjct: 61 KTFEAFLE 68


>gi|294101557|ref|YP_003553415.1| tRNA (guanine-N1)-methyltransferase [Aminobacterium colombiense DSM
           12261]
 gi|293616537|gb|ADE56691.1| tRNA (guanine-N1)-methyltransferase [Aminobacterium colombiense DSM
           12261]
          Length = 419

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 31/157 (19%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN------ADCVIDSV------RVFSNLK 78
           ++R+   + L +  +V P      E A++ +A+      A             +    L 
Sbjct: 265 ISRSCRTYGLRKFLVVTPLKSQR-ELAKTMAAHWVKGYGASFNPSRAEAFKTMKTVPTLD 323

Query: 79  EAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +AI  +         +  TTAR  +     L  K         + S + V  +FG    G
Sbjct: 324 KAIEWIKSKEHEEPLVVGTTARACSGAIHWLEMK------RTLLESQKPVLFVFGT-ASG 376

Query: 132 LTNEEIALSNAIISFPVN---PLFPSLNISQAVLLMV 165
           L  E     + ++  P++     +  L++  AV +++
Sbjct: 377 LHKEVTERCSVLLQ-PLSGGKEDYNHLSVRTAVGVIL 412


>gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 280

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 114 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 173

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 174 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 219

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            E  GL+       + ++S P+     SLN S A  +++ E         E   + QN
Sbjct: 220 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 277


>gi|170692157|ref|ZP_02883320.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
 gi|170142587|gb|EDT10752.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
          Length = 262

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 16/151 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
            L ++     I+L   Q   N+G + R+     + Q     P   +  S K   S   A 
Sbjct: 106 PLPDTVAQTCIVLDGVQDAGNVGSILRSAAAAGIQQ-VFCAPGTAYAWSSKVLRSGMGAH 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++   ++  +++          A T   R     V+                  +  +F
Sbjct: 165 FLL---QIHEDVE----------AQTLIERLAVPVVIT-DSHGAEAIYDCDLSAELAWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
           G E  G++          ++ P      SLN
Sbjct: 211 GNEGAGVSQAWRDAVTLRVTIPQPGGMESLN 241


>gi|40786353|dbj|BAD07003.1| conserved hypothetical protein [Onion yellows phytoplasma]
          Length = 119

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +I    ++ II G E  G+ +      + ++  P+     SLN+S A  LM++
Sbjct: 59  QIPKNSSLAIIVGNEGIGIRHLLKQQCDFLVKIPMYGKINSLNVSVAAALMIY 111


>gi|261212101|ref|ZP_05926387.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
 gi|260838709|gb|EEX65360.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
          Length = 244

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|256379474|ref|YP_003103134.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255923777|gb|ACU39288.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 282

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 +FG E  GL +E +   +  +  P+     SLN++ A  + ++
Sbjct: 226 AHPTAWVFGSEAHGLPDEVVTSLDGALKVPLYGGAESLNLATAAAVCLY 274


>gi|152967110|ref|YP_001362894.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151361627|gb|ABS04630.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 264

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 3/162 (1%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            +  +    V +L   +   N G V RA        + L        + K   S+A +  
Sbjct: 94  DVLAARPRLVAVLDRVRDPGNAGTVLRAADAAGADAVVLTEGSVDPFNPKCVRSTAGSLF 153

Query: 67  VIDSVRVFSNLKEAIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +  V     L +A+  L    +T   A    +         AA  + + +   +    +
Sbjct: 154 HLPVVVGVP-LADAVTALRRAGSTVLAADGEGDLDLDDLADAAARGVVDGVDLRRPTAWV 212

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           FG E  GL      L++A++  P++    SLN++ A ++ ++
Sbjct: 213 FGNEAAGLDAAGRGLADAVVRVPLHGRAESLNLATAAVVCLY 254


>gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330]
          Length = 246

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 13/147 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         + + +      + K   S   +   +  V          A
Sbjct: 111 QDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLP-VYRMDT-----A 164

Query: 83  DLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           D   +       R++   +L +    A +    + S ++  ++ G E  G++ E  A ++
Sbjct: 165 DFIRLA------RSSRLPILASTLSFASIDYREVGSKESFALVMGNEGQGISPEMTAAAD 218

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
            +I   +     SLN++ A  ++++  
Sbjct: 219 ILIHISMRGQAESLNVAVAAGILIFHL 245


>gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
           A14S]
 gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
           A14S]
          Length = 246

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           L + +  +N+G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNLGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKITVAN-- 157

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              I +           ++ F  + A       +N+   + + + +I G E  G+     
Sbjct: 158 ---INNTIIFL-----KKHGFW-IYASDIKGQDINKIKINDKKIALILGNEGKGVHKLIK 208

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             S+ +I  P +    SLN+S +  ++++E    
Sbjct: 209 QNSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis
           H37Ra]
          Length = 316

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 17/162 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            E  GL+       + ++S P+     SLN S A  +++ E 
Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEI 303


>gi|332533398|ref|ZP_08409263.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037107|gb|EGI73564.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 170

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 28/156 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVR 72
           VI L++P+   N+G V RA              +  +   +   A+    +   V++ + 
Sbjct: 7   VIGLINPKSPTNVGGVLRAA---GCYD----AKQVFFTGNRYLNAKKFHTDTKNVVERIP 59

Query: 73  VFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           +     L EAI             +     V+   E A  L E     +N   +FG E  
Sbjct: 60  LTETDNL-EAIK-----------PQGATVVVIELIEGATPLPE-FKHPENAFYVFGPEDG 106

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            ++ + +   + ++  P       +N++    ++++
Sbjct: 107 SVSKDVLKWCDEVVYIPT---IGCMNLAATCNVVLY 139


>gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus
           kowalevskii]
          Length = 445

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 120 NVGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              I+ G E  GL+ + + L++      +  P+     SLN + A  ++ +E     +
Sbjct: 379 KSAIVIGGETHGLSKQAVDLADETYGYKVHIPMAFGMDSLNAAMATSVVTFEAKRQYL 436


>gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 296

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 130 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 189

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 190 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 235

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            E  GL+       + ++S P+     SLN S A  +++ E         E   + QN
Sbjct: 236 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAEIARQRRRPREPREQTQN 293


>gi|77024970|gb|ABA61397.1| rRNA methylase [uncultured marine group II euryarchaeote
           HF70_59C08]
          Length = 234

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 14/150 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G   R       + L +      W S+           ++ +    +     + 
Sbjct: 97  QYQTNVGFCIRVAEVSGASGLIVTG---EWTSDDRHR-------IVRAAMRTNRFMPVVF 146

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A     ++    VLA ++             +V +I G E  G++ E + +++ 
Sbjct: 147 GCDELEAL----KSWKGRVLAIEDVGTEEPWDADLTGDVILIIGGENAGVSKELLEVADQ 202

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            I  P+    PS N+   + ++  E +   
Sbjct: 203 TIRIPMAGFTPSYNLQAPMAVVAVEALRQR 232


>gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 327

 Score = 44.7 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G ++ L       N+G   R+   F    + +   R    +      SA A   +   R
Sbjct: 170 PGLIVALDSVTDPHNLGAAMRSASAFRADGVLIPERRSAGVNATVWKVSAGAAARVPVAR 229

Query: 73  ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +   L++  A  +F+      +     +V     A + L           I+ G E 
Sbjct: 230 ETNLVRALEDLKAQGYFVVGL---DGGGDATVDTLDMADVPLV----------IVTGSEG 276

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            GL+       + I S P+     SLN + A  + +++ 
Sbjct: 277 KGLSRLVRDTCDVIASIPIASDMESLNAAVATGIALYQI 315


>gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
 gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
          Length = 249

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 22/173 (12%)

Query: 3   PYAPQLQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P  P  + +    +   +L   Q   N+G + R    F    +   N      + K   +
Sbjct: 92  PEPPLFKPATPKNLFSLVLDGVQDPGNMGTIIRTADWFGFKNIICSNNCVEVYNPKTVQA 151

Query: 61  SANADCVIDSVRVF-SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +  +   +  V +F  +L   + ++   ++      ++ +K                  G
Sbjct: 152 TMGS---LSRVNIFYEDLPGILTNVKLPVFGAVLDGKSIYK---------------TDWG 193

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +I G E  G+T   + L    ++ P      SLN++ +  ++  +   N
Sbjct: 194 NEGLVILGNEGQGITPPVMKLITHPVTIPRIGGAESLNVAISAAILCADISRN 246


>gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium Y4I]
 gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium Y4I]
          Length = 258

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 12  AKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
            + P ++L+       N+G + R+      +   ++  R    + +  + +  A   ++ 
Sbjct: 106 REAPRVLLLDRVTDPHNVGAILRSAEVLGAS--AVIGTR-HHSAPETGALAKTASGALER 162

Query: 71  VRVFS--NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIF 125
                  NL + I +L           N    VL     A    E    G+    V ++ 
Sbjct: 163 QPYLRMRNLADTITELQ----------NMGFIVLGLDGEAEQTIETALEGKQHLPVALVL 212

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           G E  GL  +     +A++       F SLN+S A  + ++
Sbjct: 213 GAEGPGLRQKTKETVDALVKIGAAGGFGSLNVSNAAAIALY 253


>gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 233

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 43/179 (24%)

Query: 12  AKGPVIILVDPQLGENIGMVARA-----------MWNFNLTQLRLVNPRDGWPSEKARS- 59
             GP+++L       N+G + R+           M             R+      A + 
Sbjct: 82  RPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME------------RNAPDETGALAK 129

Query: 60  SSANADCVIDSVRVFS---NLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +++ A  ++    V +    L +A+  L F +                      +L+   
Sbjct: 130 AASGALEIVPLGAVVNLARTL-DALKSLDFWVVGL--------------DAGGGILDGTS 174

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           F  + V ++ G E  GL        + I    +     SLN+S A  + ++E +     
Sbjct: 175 FGQRRVALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELIRRGKA 233


>gi|315501253|ref|YP_004080140.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315407872|gb|ADU05989.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 275

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++   P+   NIG + R+   F  + + +          KA  ++  +   +  VRV  
Sbjct: 120 VVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRV-P 178

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + ++ +    ++ A  A +      ++   E   V            ++ G E  GL+  
Sbjct: 179 SHRDVL---DWVAAVRA-DGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKG 234

Query: 136 EIALSNAIISFP 147
               S+ ++  P
Sbjct: 235 WQEASDRMVRIP 246


>gi|124007486|ref|ZP_01692192.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134]
 gi|123987142|gb|EAY26891.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134]
          Length = 255

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 29/170 (17%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSS 60
           TP AP  QN      ++L   Q   N+G + R    + +    L +P      + K  +S
Sbjct: 101 TPIAPLAQNEY---ALVLDGIQDPGNLGTIVRIADWYGIRS-ILCSPDTVDVYNPKVIAS 156

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIV-----LNERI 115
              +   +     +++L+                   F S+ APK          L+E  
Sbjct: 157 CMGS--FLRVNIHYTDLEA-----------------YFPSLAAPKVYGAFLDGANLHEWS 197

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           F  +   I+ G E  G+     +     I+ P      SLN++ A  ++ 
Sbjct: 198 FPKEAGYIVLGNESKGIRASMASHIQQKITIPRFGQAESLNVAMATAIIC 247


>gi|296131382|ref|YP_003638632.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296023197|gb|ADG76433.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 168

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R R +    +   E ++ L +   +     ++ G E+ G+  E + L + ++  P+    
Sbjct: 89  RERGSAVVGVELAEESVRLGDLPVARGRTVMVLGHEQTGVPPEALDLLDVVVEIPMVGTG 148

Query: 153 PSLNISQAVLLMVWEC 168
            SLN++ A  L+++  
Sbjct: 149 ASLNVAVAGSLVLYRL 164


>gi|262402833|ref|ZP_06079394.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
 gi|262351615|gb|EEZ00748.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
          Length = 244

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 275

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 7/180 (3%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              PQ  N AK  V+ L   Q   N+G + R      +  + L        S K   +SA
Sbjct: 99  DSLPQAVNQAKF-VLALDRLQDPGNLGTLLRTALAAEVEAVWL-ASGADPLSPKVLRASA 156

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQ 119
            A   +   R  S+ +EA+  L       A       + + P  +A        ++   +
Sbjct: 157 GAILQLPHERFGSSGQEAVEQLAEQLECAASRGLQVVATMVPASSAAHSCLPYWQLDWRK 216

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL-MVWECMENSIVSSEK 178
              ++ G E  GL           ++ P +    SLN++ AV + ++ E    ++  S +
Sbjct: 217 PTVLVLGNEGSGLHPRLQECCTDCVTLPHSAAVESLNVA-AVAVPLLLERRRATMTFSTQ 275


>gi|23007926|ref|ZP_00049585.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 135

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 17/125 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK---ARSSSANADCVIDSVRVFSNLKEAI 81
             N+G + R    F +T   +V      P+     A+S+S   + V   + +  NL EA+
Sbjct: 16  PHNVGAIVRTAAAFGVT--AIVTTARHSPNATGVLAKSASGGLEHVP--LVIVRNLAEAL 71

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    T   R   +  L  +  A    + I   +   +  G E  GL        +
Sbjct: 72  --------ITLGERGFTRIGLDSE--AGTSLDAIGPRRPAVLALGAEGKGLRQRTTECCD 121

Query: 142 AIISF 146
            ++  
Sbjct: 122 VLVRI 126


>gi|330872262|gb|EGH06411.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 60

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           G E  G+        + ++  P+     SLN+S A  + ++E +    V + 
Sbjct: 5   GEEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRSVKAA 56


>gi|171691857|ref|XP_001910853.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945877|emb|CAP72678.1| unnamed protein product [Podospora anserina S mat+]
          Length = 680

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 15/191 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K  V++L       N+G + R++  F    + + N      +  A  +SA A    + V 
Sbjct: 491 KPLVVVLDRILDPVNLGAILRSVGFFGAAAVAITNYGGTKITPVALKASAGAA---EEVT 547

Query: 73  VF--SNLKEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           +F  ++L E +         +YA  A+     +         I   + +     V ++ G
Sbjct: 548 IFGINSLPEFLNASRANGWEVYAAVAQEPGATRQRRQVDLFDIEKTDPLKRTPCV-LLLG 606

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECM--ENSIVSSEKNVK 181
            E  GL    +  ++  ++ P         SLN++ A  L+    +      V  ++  +
Sbjct: 607 SEGEGLDRLVVKKADYELNIPSMAGQSVVDSLNVNVAGALLCASFLKGMQKAVLKKEAAE 666

Query: 182 EQNTPATKGEL 192
           E     TK  L
Sbjct: 667 EDGEEVTKETL 677


>gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia]
          Length = 261

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 24/154 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q  +N G + R  +   +    +V  +   P S     +SA A   ++ + +F    + +
Sbjct: 114 QDPQNFGAILRVCFFLGINT-VIVEKKGQCPLSPTVSKTSAGA---LELMNIFET--DNL 167

Query: 82  ADLHFIYATTARNRNNFKSVL----APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           A+         + R +   V+          I   ++  +     IIFG E  G+  E  
Sbjct: 168 ANFV-------KQRKHEFQVIGSGFESNSIPIDEFQKDQNKPKKIIIFGSESSGIRTELF 220

Query: 138 ALSNAIISFPVNPL-FP-----SLNISQAVLLMV 165
              + I++   +   FP     SLN+S +  +++
Sbjct: 221 KQCDTIVNIMTSRHTFPETLVDSLNVSVSAGIIL 254


>gi|71280430|ref|YP_267533.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71146170|gb|AAZ26643.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
          Length = 180

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANAD 65
           L       +++L +     NIG   R    F + +  +V    G    S+K    ++   
Sbjct: 23  LTKPKIPLIVVLDNVTNSYNIGAFIRLADAFAIEK-VIV---CGALTISDKKMKKASR-- 76

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNN--FKSVLAPKEAAIVLNE--RIFSGQNV 121
              +  +           + +  +TTA  +        +   E      +  ++      
Sbjct: 77  ---NEAKWVC--------VEYSDSTTASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKC 125

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ G ER G++   + LS   I  P+  +  SLN+S A  +++ EC   
Sbjct: 126 VLVLGNERKGVSEAALKLSLQQIHIPMFGMGNSLNVSTAGAIVLAECANQ 175


>gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
 gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
          Length = 254

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGSGVRQEVLAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus]
          Length = 354

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 20/181 (11%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P LQ       I     Q   N+G + R         + L      + + K   +S 
Sbjct: 170 PLPPTLQTVLICDGI-----QDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASM 224

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   + S+R+  + +E +  +        R R     + A    A + +          
Sbjct: 225 GASFRLPSLRL-ESWQEVVELM--------RARGIR--MYAADGGARLSHFDADWTSPSA 273

Query: 123 IIFGRERWGLTNE---EIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           ++ G E  GL++    E+       +S P+     SLN + A  +++ E     +V+   
Sbjct: 274 LVVGAEARGLSDAARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQRLVAERH 333

Query: 179 N 179
           +
Sbjct: 334 D 334


>gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
          Length = 252

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q   N+G + R      + +  +V        + K   S+  A   +  V+   +L E I
Sbjct: 116 QDPGNLGTIIRTADAAGV-EAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVK--GDLLEMI 172

Query: 82  ADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           + L      +Y T+ +N   +  V                     ++ G E  G++ + +
Sbjct: 173 SLLKEREIAVYGTSLQNGKVYTCV--------------KPSNEFALVVGNEGNGVSEKVL 218

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             ++  +  P+     SLN++ A  ++++   
Sbjct: 219 EQTDQNLYIPIYGKSESLNVAIASGILLYYLR 250


>gi|313471804|sp|B2IBT9|TRML_BEII9 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 160

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 11/153 (7%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L  P + +N G + R      + +  ++ P     S++    +      +D V       
Sbjct: 4   LYQPDIPQNCGTMLRLCACLGV-EAAIIEPAGFPVSDRHFRRA--GMDYLDQV------- 53

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            A++      A  A      + ++     A           +  ++ GRE  G+     A
Sbjct: 54  -ALSRHVSFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHA 112

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++A +  P+ P   SLN++ A  +++ E +  
Sbjct: 113 SADARVVIPLRPPMRSLNVAVAAAMVLGEALRQ 145


>gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 265

 Score = 44.7 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +    ++    +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVP-YGKVTPAGSFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus]
 gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus]
          Length = 311

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +G    ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E     
Sbjct: 238 TGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297

Query: 173 IVSSEKNVKEQNT 185
            +  E   ++++ 
Sbjct: 298 RIKVEDLSRDRSY 310


>gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus]
 gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus]
          Length = 311

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +G    ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E     
Sbjct: 238 TGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297

Query: 173 IVSSEKNVKEQNT 185
            +  E   ++++ 
Sbjct: 298 RIKVEDLSRDRSY 310


>gi|73967329|ref|XP_853914.1| PREDICTED: similar to RNA methyltransferase like 1 [Canis
           familiaris]
          Length = 423

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 44/202 (21%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKEAI 81
             N+G + R+      +++ L          K   ++  A     +I+++  +  L   +
Sbjct: 220 PGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAAMGAHFQVPIINNLD-WETLPNYL 278

Query: 82  -ADLHFIYA----------TTARNRNNFKSV------------------LAPKEAAIVLN 112
             D     A           + +  ++                      L P  +   L 
Sbjct: 279 PTDTRVYVADNCGLYAQAQMSDKASDHGWVCDRRLSKLHKYEEEEEEEDLEPGASKAWLP 338

Query: 113 ERIFSG-------QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAV 161
           E                ++ G E  G++ E + L+ +     +  PV P   SLN + A 
Sbjct: 339 ELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAA 398

Query: 162 LLMVWECMENSIVSSEKNVKEQ 183
            ++++E      V +E   +++
Sbjct: 399 SILLFEGRRQLRVRAEHLSRDR 420


>gi|116513973|ref|YP_812879.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093288|gb|ABJ58441.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 291

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +     + +I G E  GL  + IA S+  I  P+     SLN++ A  L  WE  + 
Sbjct: 232 ALKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKG 289


>gi|146339026|ref|YP_001204074.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146191832|emb|CAL75837.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 161

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 25/162 (15%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I L  P + +N G + R      L    ++ P     S++    +      +D +  R  
Sbjct: 3   IALYQPDIPQNTGTILRLCACLGLAA-HIIEPAGFAVSDRQFRRA--GMDYLDHLDWRRH 59

Query: 75  SN---LKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +    +   A      +  TT    +       P +                ++ GRE 
Sbjct: 60  DSWSAFEAWRATQGYRLLLLTTKGATSYLDISYRPDDI---------------LLLGRES 104

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+       ++A +  P+ P   SLN++ A  +   E +  
Sbjct: 105 VGVPATVADAADARLRIPLKPGMRSLNVAIASAMAAGEALRQ 146


>gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 252

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVILGRGSADLYNPKVIRSTQGSHFHIPVIQADLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   E A  LN+     + + ++ G E  G+
Sbjct: 171 WIANLEE--EGVPVIGA-----------VLD--EQAKSLNDMPKR-ETLALMVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E     +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SPELQERLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo]
 gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo]
          Length = 246

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           L + +  +N G + R    F++  L +         +     +S+ A   +  + V +N+
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKHSAKDNSTVLRTSSGASQYVKKITV-TNI 158

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              I  L          ++ F  +         +N+   + + + +I G E  G+     
Sbjct: 159 NNTINFL---------KKHGFW-IYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLTK 208

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             S+ +I  P +    SLN+S +  ++++E    
Sbjct: 209 QNSDFLIRIPTSGKIDSLNVSVSAGILIFEIKRQ 242


>gi|241895530|ref|ZP_04782826.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|55274184|gb|AAV48972.1| hypothetical RNA methyltransferase [Weissella paramesenteroides]
 gi|241871232|gb|EER74983.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 202

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           +    +FG E+ GL +E I  ++ +I  P      SLN+S A  ++ 
Sbjct: 143 KKSVFLFGEEQIGLADELIQAADQMIYIPQTGSVRSLNVSVAHGIIA 189


>gi|300811210|ref|ZP_07091718.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497810|gb|EFK32824.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 291

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     + +I G E  GL  + IA S+  I  P+     SLN++ A  L  WE  + 
Sbjct: 233 LKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKG 289


>gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
           pediculicola USDA]
 gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
           pediculicola USDA]
          Length = 259

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 17/152 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEAIADL 84
           N+G   R    F +  + +   R    +E     S  A   +  +R  + + + E +   
Sbjct: 109 NLGSCLRTAHFFGVDAVIVSKNRSARINEIVEKVSCGASRYVPMIRTNLVNCI-EKLKKY 167

Query: 85  HF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              +  T   +    +S+       + +NE+      + II G E  G+        + +
Sbjct: 168 DVQVLGT---DEKANRSIYD-----LEINEK-----KIAIIVGNEEKGIRQIIKKNCSRL 214

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              P      SLN+S    + ++E       S
Sbjct: 215 FRIPTKKQTSSLNVSVTAGIFLFEVCRQRKDS 246


>gi|68074789|ref|XP_679311.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500033|emb|CAH94615.1| hypothetical protein PB000715.00.0 [Plasmodium berghei]
          Length = 494

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 28/55 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +N  +I G E+ GL +  + L +  +  P + +  SLN+  +  + ++E  +  +
Sbjct: 440 ENCILILGDEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQHL 494


>gi|82705756|ref|XP_727099.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482786|gb|EAA18664.1| Saccharomyces cerevisiae ORF 2310-related [Plasmodium yoelii
           yoelii]
          Length = 777

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 28/55 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +N  +I G E+ GL +  + L +  +  P + +  SLN+  +  + ++E  +  +
Sbjct: 723 ENCILILGDEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQHL 777


>gi|209694342|ref|YP_002262270.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238]
 gi|208008293|emb|CAQ78439.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238]
          Length = 171

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 22/156 (14%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV- 71
               I L +P+   N+G V RA   + +  +R      G   ++A     +    ++ + 
Sbjct: 4   THVTIGLSNPKSPTNVGAVMRAAGCYQVDDVR----YTGERYDRATKFQTDTKKAVNKIP 59

Query: 72  -RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                 L + +AD            +     +   E A+ L E     + +  +FG E  
Sbjct: 60  LTSVECLLDNLAD------------DMKIVCVELAEGAVSLPEFKHPDKAI-YVFGPEDG 106

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +T +    ++ ++  P       +N++  V ++++
Sbjct: 107 SITQQVADRADHVVYIPT---VGCMNLAATVNVLLY 139


>gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25]
 gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25]
          Length = 268

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 26/161 (16%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCV 67
             AKG +I L       N+G + R    + +  +          + K  S++        
Sbjct: 121 PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQ 180

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---II 124
           +  V + S L+EA                       P   A +  E +   +      ++
Sbjct: 181 VSLVDLPSYLEEA---------------------NLPVYGAFLEGESVHKTEFAAEGILL 219

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            G E  G+  E   L    I+ P      SLN++ A  +++
Sbjct: 220 MGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATGIIL 260


>gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
           ATCC 14931]
 gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
           ATCC 14931]
          Length = 251

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 105 ILDELADPHNLGSILRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARV-TNL 163

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +   +L     +++ T               +       R  +   V ++ G E  G++
Sbjct: 164 VQVAKELQKSGVWLFGT---------------DMQGTDYRRWDAKGAVALVIGNEGKGIS 208

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                  + +++ P+     SLN S A  L++++
Sbjct: 209 PLLKKTCDEMLTIPMIGHVQSLNASVAASLLIYQ 242


>gi|313123601|ref|YP_004033860.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280164|gb|ADQ60883.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 291

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     + +I G E  GL  + IA S+  I  P+     SLN++ A  L  WE  + 
Sbjct: 233 LKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKG 289


>gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
           C505]
 gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
           C505]
          Length = 332

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 34/168 (20%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV----- 67
              ++ L       N+G V R+   F           DG    + RS   NA        
Sbjct: 175 TPLLVALDQVTDPHNLGAVLRSAGAFG---------ADGVIIPERRSVGVNATVWKVSAG 225

Query: 68  -------IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                       +   L++   +  F+                       + +   +   
Sbjct: 226 AAARVRVARETNLVRTLEQLKKEGCFVVGLDGSGST-------------AVEDLTLADSP 272

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + ++ G E  GL+       + + S P++    SLN + A  + ++E 
Sbjct: 273 LVLVTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLYEV 320


>gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
 gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
          Length = 252

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 20/151 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + +        + K   S+  A   +  V+   +L E I+
Sbjct: 116 QDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVK--GDLLEMIS 173

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            L      +Y T+ +N   +  V                     +I G E  G++ + + 
Sbjct: 174 LLKERGIAVYGTSLQNGKVYTCV--------------KPSNEFALIVGNEGNGVSEKVLE 219

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            ++  +  P+     SLN++ A  ++++   
Sbjct: 220 QTDQNLYIPIYGKSESLNVAIASGILLYYLR 250


>gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 266

 Score = 44.7 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 26/163 (15%)

Query: 18  ILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DS 70
           +LV   Q   N+G + R      +  + L        + K   ++  +   +      + 
Sbjct: 120 VLVDGIQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKTLRATMGSLFHLPVIMAGEP 179

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V+    L +A   +  +                P++   V    +     V ++ G E  
Sbjct: 180 VQAAELLLQA--GIRLVVG-------------MPQDCQPV--YSVDLTGPVALVVGSEAN 222

Query: 131 GLTNEEIALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G++ E +    AI ++ P+     SLN + A  +M++E +   
Sbjct: 223 GVS-EGLKRLPAIPVNIPMPGHAESLNAAIAAAIMLYEAVRQR 264


>gi|104773970|ref|YP_618950.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423051|emb|CAI97747.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125661|gb|ADY84991.1| Putative rRNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 291

 Score = 44.7 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +     + +I G E  GL  + IA S+  I  P+     SLN++ A  L  WE  + 
Sbjct: 232 ALKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKKG 289


>gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262]
 gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262]
 gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378]
          Length = 252

 Score = 44.7 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-----DSVR 72
           LVD  Q   N+G + R         + L        + K   S+  +   I     D   
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQADLFE 170

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +NL+E    +  I A           VL   + A  LN+     + + ++ G E  G+
Sbjct: 171 WVANLEE--EGVPVIGA-----------VLD--DQAKSLNDMPKR-ETLALMVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E     +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.]
          Length = 247

 Score = 44.7 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           I     + ++ G E  G+        + ++  P+     SLN+S A  + ++E +   +
Sbjct: 186 IQLDGALALVMGAEGAGMRRLTREACDEVVRIPLAGHVQSLNVSVASGICLFEAVRQRL 244


>gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
 gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
          Length = 256

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L      +N+GM+ R+     +T   +V  R   P     + ++        V   ++
Sbjct: 114 ILLDRVTNPQNLGMILRSTTAAGITG-VIVPERGCAPLGPLVAKASAGTLFHAPVLRCTS 172

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             EA+ D       T    ++       +E                 + G E  G+  + 
Sbjct: 173 SSEAL-DALLGLGFTCYTLSSHTESNFFEEHIP---------AKAVFVLGNESEGVAPDI 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +   A +  P++    SLN++    L+ +
Sbjct: 223 ASRCQAKVRIPMHNGVESLNVAITAALIAY 252


>gi|239986481|ref|ZP_04707145.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 272

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P A +L  +A+  V+++       NIG + R+     +    L++P    P   ++   S
Sbjct: 109 PAADELLATARR-VVVMESVNDHTNIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVS 166

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQN 120
             A   +   R    L+     L  +     R        L P   A  ++E      + 
Sbjct: 167 MGAVFSVPYAR----LEAWPKGLEAV-----REAGFRLLALTPDAKATSIDEAAPHRLER 217

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           V ++ G E  GL+   +  ++  +  P+     SLN+  
Sbjct: 218 VALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLNVGA 256


>gi|8895693|gb|AAF81066.1|AF223364_1 tRNA/rRNA methyltransferase-like protein [Myxococcus xanthus]
          Length = 88

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 8  LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
          L+  A+   ++LV PQ+  N G VAR        +L LV P      ++    +      
Sbjct: 2  LEPLARPLHLVLVSPQIPPNTGNVARLCAVTGC-RLILVEPLGFSIDDRQLKRA--GLDY 58

Query: 68 IDSV 71
           D V
Sbjct: 59 WDKV 62


>gi|303249293|ref|ZP_07335525.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           fructosovorans JJ]
 gi|302489299|gb|EFL49256.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           fructosovorans JJ]
          Length = 264

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 10/159 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
             + +     + L   Q   N+G +AR ++      + L           A  +SA    
Sbjct: 108 ATRAAPLPVAVALDRVQDPGNVGTLARTLFALGGGGILLPRHEGARLGPGAAKASAGTLA 167

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +   +V +NL +A+          A     F  V A  E          +   + ++ G
Sbjct: 168 RLPVAKV-TNLAQALD---------AAIEAGFSIVGAAGEPEADNALEATADFPLILVLG 217

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            E  G+          +   P      SLN++QA  +++
Sbjct: 218 NEDEGIRQGIRKRCGRLWRIPQARPIDSLNVAQAGAIIL 256


>gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 254

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 247

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 26/173 (15%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P L+N   G  ++L D Q   N+G + R      L    L++ +      +    S 
Sbjct: 93  PSLP-LENLKVGRYLVLEDVQDPGNVGTMIRTADAAGLDG-VLISEKSADIYNQKTLRSM 150

Query: 63  NADCV---IDSVRVFSNLKEA---IADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERI 115
                   I    V+    EA   + +L   + ATT    +             V  + +
Sbjct: 151 QGSHFHLPIWRTNVY----EACQKLQNLDVPLIATTLSKES-------------VSYKTV 193

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
               N  ++ G E  G+++     ++ +    +     SLN++ A  +++++ 
Sbjct: 194 EHNGNFALVMGNEGNGISDSMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 246


>gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 265

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
 gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
          Length = 265

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
 gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
 gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
 gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
 gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
 gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
 gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
 gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
 gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 265

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 254

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
 gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
 gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
 gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
 gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
 gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
 gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
 gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
 gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
 gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
 gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
 gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
 gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
 gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
          Length = 265

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
          Length = 265

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987]
          Length = 254

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
          Length = 254

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|54023445|ref|YP_117687.1| hypothetical protein nfa14780 [Nocardia farcinica IFM 10152]
 gi|54014953|dbj|BAD56323.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 165

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
           L P+             +    + G E  GL    + L + +I  P +P   SLN+S A 
Sbjct: 80  LDPR---AESLTTFAHPRRALYLLGAEDHGLPEAVLTLCHQVIQIP-SPAPWSLNVSVAG 135

Query: 162 LLMVW-----ECMENSIVSSEKNVKEQNTP 186
            L++      E    ++ +    + +  T 
Sbjct: 136 SLVLHDRFVKESQRKALANPAARLAQAVTA 165


>gi|23502412|ref|NP_698539.1| RNA methyltransferase [Brucella suis 1330]
 gi|62290431|ref|YP_222224.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700354|ref|YP_414928.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|148559238|ref|YP_001259422.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|161619491|ref|YP_001593378.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163843802|ref|YP_001628206.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|189024660|ref|YP_001935428.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225853026|ref|YP_002733259.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|254689732|ref|ZP_05152986.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
 gi|254694221|ref|ZP_05156049.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697876|ref|ZP_05159704.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254704799|ref|ZP_05166627.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
 gi|254708213|ref|ZP_05170041.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis
           M163/99/10]
 gi|254710583|ref|ZP_05172394.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
 gi|254730767|ref|ZP_05189345.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 4 str. 292]
 gi|256032077|ref|ZP_05445691.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
 gi|256045169|ref|ZP_05448068.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114120|ref|ZP_05454874.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160273|ref|ZP_05457967.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
 gi|256255478|ref|ZP_05461014.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
 gi|256257985|ref|ZP_05463521.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
 gi|256369962|ref|YP_003107473.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260169212|ref|ZP_05756023.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
 gi|260546966|ref|ZP_05822705.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260565232|ref|ZP_05835716.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260565958|ref|ZP_05836428.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260755264|ref|ZP_05867612.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758485|ref|ZP_05870833.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762310|ref|ZP_05874653.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261214528|ref|ZP_05928809.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|294852864|ref|ZP_06793537.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|297248817|ref|ZP_06932535.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str.
           B3196]
 gi|23348399|gb|AAN30454.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|62196563|gb|AAX74863.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616455|emb|CAJ11518.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|148370495|gb|ABQ60474.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
 gi|161336302|gb|ABX62607.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163674525|gb|ABY38636.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|189020232|gb|ACD72954.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225641391|gb|ACO01305.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|256000125|gb|ACU48524.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260096016|gb|EEW79893.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260151300|gb|EEW86394.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155476|gb|EEW90556.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260668803|gb|EEX55743.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672742|gb|EEX59563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675372|gb|EEX62193.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260916135|gb|EEX82996.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|294821453|gb|EFG38452.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|297175986|gb|EFH35333.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str.
           B3196]
 gi|326409566|gb|ADZ66631.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
 gi|326539270|gb|ADZ87485.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
          Length = 159

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++A   +      ++   +
Sbjct: 4   RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQAAL 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +      D        A  +N  + ++     A +        +N  ++FGRE  G+ 
Sbjct: 59  TRHPDWNRFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 ++  +  P+     SLN++ +V +   E +  
Sbjct: 111 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 148


>gi|320531672|ref|ZP_08032612.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320136092|gb|EFW28100.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 304

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 9/155 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N G + RA        + LV       + K   S+A +   +  V   + L
Sbjct: 158 VLAQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVA-L 216

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+  LH    T              +    +             + G E  GL +E +
Sbjct: 217 DDAVTALHSAGLTVLAADG--------RGDLDLFEAESLLEAPSAWLLGNEAHGLPSEAL 268

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + ++A++S P+     SLN++ A  + ++      
Sbjct: 269 SRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQ 303


>gi|261416042|ref|YP_003249725.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372498|gb|ACX75243.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327067|gb|ADL26268.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 415

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + +  + G E  G     I L++  +  P++    SLN++ A  ++ +E  +
Sbjct: 358 RKMAFLVGNEGAGTNPYFIELADETVKIPMSSELESLNVAVAHGILSYEAAQ 409


>gi|239939998|ref|ZP_04691935.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291443427|ref|ZP_06582817.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291346374|gb|EFE73278.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
          Length = 256

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 13/159 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSS 61
           P A +L  +A+  V+++       NIG + R+     +    L++P    P   ++   S
Sbjct: 93  PAADELLATARR-VVVMESVNDHTNIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVS 150

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQN 120
             A   +   R    L+     L  +     R        L P   A  ++E      + 
Sbjct: 151 MGAVFSVPYAR----LEAWPKGLEAV-----REAGFRLLALTPDAKATSIDEAAPHRLER 201

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
           V ++ G E  GL+   +  ++  +  P+     SLN+  
Sbjct: 202 VALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLNVGA 240


>gi|78358620|ref|YP_390069.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78221025|gb|ABB40374.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 253

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 26/146 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLR------LVNPR--DGWPSEKARSSSANADCVIDSVRVF 74
           Q   N G +AR         L       ++ P+         A  +SA A   +   R  
Sbjct: 112 QDPGNAGTLART--------LYALGGGGIIMPKHNASALGSAAVKASAGALARLPVAR-A 162

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +NL  A+         TA ++  F    A  +   V            ++ G E  G+  
Sbjct: 163 TNLSRALE--------TAADQG-FSIYAARFDDGSVNAFTARLDTPAVLVLGNEDKGVRP 213

Query: 135 EEIALSNAIISFPVNPLFPSLNISQA 160
                  A I  P+   F SLN++QA
Sbjct: 214 GVAKRCTASIHIPMQREFDSLNVAQA 239


>gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
 gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
 gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
 gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
          Length = 265

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGSGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|182413334|ref|YP_001818400.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840548|gb|ACB74800.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 262

 Score = 44.3 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 28/181 (15%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSS 61
           P  P   N   G  + L   Q   N+G + R    F L +  L++P       +K  ++S
Sbjct: 103 PLPPDALNH--GLTLALDGVQDAGNVGTLLRIADWFALDR-VLLSPDCADVFHQKVINAS 159

Query: 62  ANADCVIDSVRVFS-NLKEAIADLHF-IYAT--TARNRNNFKSVLAPKEAAIVLNERIFS 117
             +      V+V S  L  A+A +   +     T  N +    +                
Sbjct: 160 MGS---FARVQVHSVELPTALAGVRVPVLGCDLTGENVHALPPL---------------- 200

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
             +  I+ G E  GL+     L +  ++ P      SLN + A  ++             
Sbjct: 201 -ADAVIVIGSEGRGLSPAVAELVSRRVTIPRYGQAESLNAAIAAAIVCDNLRSARGRPPT 259

Query: 178 K 178
            
Sbjct: 260 P 260


>gi|260663232|ref|ZP_05864124.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552424|gb|EEX25475.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           fermentum 28-3-CHN]
          Length = 251

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL +     N+G + R      +  + +   R    +     +S  A   +   RV +NL
Sbjct: 105 ILDELADPHNLGSILRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARV-TNL 163

Query: 78  KEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            +   +L     +++ T               +       R  +   V ++ G E  G++
Sbjct: 164 VQVAKELQKRGVWLFGT---------------DMQGTDYRRWDAKGAVALVIGNEGKGIS 208

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                  + +++ P+     SLN S A  L++++
Sbjct: 209 PLLKKTCDEMLTIPMIGHVQSLNASVAASLLIYQ 242


>gi|160946403|ref|ZP_02093612.1| hypothetical protein PEPMIC_00363 [Parvimonas micra ATCC 33270]
 gi|158447519|gb|EDP24514.1| hypothetical protein PEPMIC_00363 [Parvimonas micra ATCC 33270]
          Length = 98

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L E  F G+N+ ++ G E  G++ E + +SN  +   ++    SLN+S A  +++++  +
Sbjct: 39  LEEFTFDGKNI-VVMGNEANGISAEMLKISNNHLKIDMDNSMESLNVSIAAAIIMYKIFK 97

Query: 171 N 171
            
Sbjct: 98  G 98


>gi|163754275|ref|ZP_02161398.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
 gi|161326489|gb|EDP97815.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
          Length = 242

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 68/165 (41%), Gaps = 21/165 (12%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +A+G ++ L D +   N+G + R    F +TQL          + K   ++  +   ++ 
Sbjct: 93  NAEGLIVALDDVRDPGNLGTIIRLCDWFGVTQLVCSEATVDCYNPKVIQATMGSLTRVN- 151

Query: 71  VRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             V++NL+  +++    ++      +N +K+ L                ++  ++ G E 
Sbjct: 152 -VVYANLENYLSETKLPVFGAFMDGKNVYKTNLP---------------KDGILVMGNEA 195

Query: 130 WGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECMEN 171
            G++ +   L    I+ P         SLN++ A  +++ E   +
Sbjct: 196 NGVSEKISTLITEKIAIPRFGEIQQTESLNVAMATGILLNEFKRS 240


>gi|114568580|ref|YP_755260.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114339042|gb|ABI64322.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 178

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 51/180 (28%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
               N+G + R    F                  + + + NA   +  V           
Sbjct: 17  SKPMNMGAILRTAHAFG----------------ASFAFTLNASHQVRDVYRAD------- 53

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAA-----------IVLNERIFSGQN------VGIIF 125
                   TA++ ++      P  +A           I L E      +         +F
Sbjct: 54  --------TAKSADHVPYYEWPDLSAMALPSNCQLVGIELAEDAVDLPSFRHPLCAAYVF 105

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           GRER  L+ E     + I+  P    F   N+S A  + +++   N     E+ +     
Sbjct: 106 GRERGSLSQEVQDRCSHIVKIPT--KFCV-NVSVACAITLYDRQINFGGFPERPLMPGGP 162


>gi|10439014|dbj|BAB15401.1| unnamed protein product [Homo sapiens]
 gi|31417389|gb|AAH09416.2| MRM1 protein [Homo sapiens]
 gi|48146831|emb|CAG33638.1| FLJ22578 [Homo sapiens]
          Length = 155

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 13/104 (12%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF------PVNPLFPSLNISQ 159
           E  I+        +   ++ G E  GL+ E  A    +++       P  P   SLN+S 
Sbjct: 39  EIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP--PGLESLNVSV 96

Query: 160 AVLLMVWECMENS-----IVSSEKNVKEQNTPATKGELLSFLDY 198
           A  +++                 + +++   P+ + E LS   +
Sbjct: 97  AAGILLHSICSQRKGFPTEGERRQLLQDPQEPSARSEGLSMAQH 140


>gi|218135121|ref|ZP_03463925.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990506|gb|EEC56517.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
           43243]
          Length = 261

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    + G E  GLT+    + +  I  P+     SLN + A  ++ +E     
Sbjct: 203 KASAFVIGNEGNGLTDAVTNICSNRIRIPMAGKVESLNAAIAASVLTFEAARQR 256


>gi|209878796|ref|XP_002140839.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
           RN66]
 gi|209556445|gb|EEA06490.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
           RN66]
          Length = 199

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           IL++    +N G + R+   F ++++  V  R      K R+          S+  +  L
Sbjct: 17  ILMNISKRQNFGALLRSACGFGVSEVLAVGKR------KLRTFGNKGTLPYISLTYYDTL 70

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           +E +  +H                +   E ++ +    F  ++   I G E  GL+  +I
Sbjct: 71  EEVVEIVH--------AEEMDIVGIEINENSLPVYPHPFR-RSTAFILGNEGTGLSQRQI 121

Query: 138 ALSNAIISFPVNPL-FPSLNISQAVLLMVW 166
            + + ++  P+      SLN++ A  ++  
Sbjct: 122 DICDYLVYIPMYGSGTASLNVAIAGSILFH 151


>gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1
           BAC clone 67]
          Length = 319

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 18/167 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSNLKEAIA 82
             N+G + R+   F++    +V        E     +  A   ++ V +    NL  A+ 
Sbjct: 147 PHNVGAILRSAAAFDVGG-VIV--THRHSPEITGVLAKAASGALEHVPMAGVQNLARAL- 202

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  TT ++       L  +  A      +     + ++ G E  GL      L + 
Sbjct: 203 -------TTLKDEGFAVIGLDSE--APEKMGDLPLKLPIVLVLGAEGRGLRPSTRELCSH 253

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           +    +     SLN+S A  + ++   +     +    +E + PA++
Sbjct: 254 LARLELPGAIKSLNVSNAAAISLYAVQQAI---TRMLKQEGSAPASR 297


>gi|170744270|ref|YP_001772925.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168198544|gb|ACA20491.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 163

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 25/174 (14%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76
           L  P + +N G + R         + ++ P     S++    S      +D V +    +
Sbjct: 6   LYQPDIPQNTGTMLRLAACLGAA-VEIIEPAGFDVSDRHLRRS--GLDYLDHVAITRHRS 62

Query: 77  LKEA-----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             E       A L  + ATTA      +    P +                ++ GRE  G
Sbjct: 63  FAEFEAWRRRASLRLVLATTAGALPYTEFAYRPDDC---------------LLVGRESAG 107

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
           + +   A + A +  P+ P   SLN++ A  +++ E +  +            T
Sbjct: 108 VPDSVHAAAEARVVIPLRPGLRSLNVAVAAAMILGEALRQTGGFPGSAAPGGAT 161


>gi|225568314|ref|ZP_03777339.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
           15053]
 gi|225162843|gb|EEG75462.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
           15053]
          Length = 250

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 20/164 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           + +L + +   N+G + R         + +   R    +     +SA A       +V  
Sbjct: 103 IFLLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRASGLTATVARTSAGALNYTPVAKVTN 162

Query: 74  -FSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
               ++E     L F+ A                +       R+     +G++ G E  G
Sbjct: 163 LVKTMEELKEKGLWFVCA----------------DMDGESMYRLNLTGPIGLVIGNEGEG 206

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +        +     P+     SLN S A  ++ +E +   I  
Sbjct: 207 VGRLVKETCDFAAGIPMKGNIDSLNASVAAGVLAYEIVRQRIQK 250


>gi|59712920|ref|YP_205696.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio fischeri
           ES114]
 gi|59481021|gb|AAW86808.1| 23S rRNA (Gm2251)-methyltransferase [Vibrio fischeri ES114]
          Length = 248

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 16/172 (9%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR--SSSANAD 65
           +  +    +++L       N+G   R      +    +V P+D   S  A     +  A 
Sbjct: 90  VSQTENPLLLVLDGVTDPHNLGACLRNADAAGVAA-VIV-PKDKSASMTATVSKVACGAA 147

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  VRV           +      A        V    EA   + +   +G  + I+ 
Sbjct: 148 ETVPLVRVT----------NLARTMRALQEKGVWFVGTAGEATHDVFQSKLTG-PLAIVM 196

Query: 126 GRER-WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           G ER W  + + +   + +I  P+     SL +S A  + ++E +    +  
Sbjct: 197 GAERRWHASLKHVKTCDDLIKIPMAGSVSSLKVSVASGICLFEAVRQRALQG 248


>gi|294667071|ref|ZP_06732297.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603163|gb|EFF46588.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 305

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 21/181 (11%)

Query: 3   PYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARS 59
           P    L    +GPV+ L         N G + R+  +F +  L L      G     AR 
Sbjct: 140 PLQEWLAALPQGPVLALWLCGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARV 199

Query: 60  SSANADCVIDSVRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           +   A+ V   +    +   A+A L    F  A T  +             A  L +R+ 
Sbjct: 200 AEGGAEAVP--LVQLPDTATALAQLRQAGFAIAATLVDGGQ-------DVFAAALPQRL- 249

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                  + G E  G+        +  +S   +    SLN++ A  +         +   
Sbjct: 250 -----VYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHARMLTGE 304

Query: 177 E 177
            
Sbjct: 305 H 305


>gi|213026633|ref|ZP_03341080.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 105

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
           +T E + L++  I  P+  +  SLN+S A  L+++E       +     +    P  + +
Sbjct: 1   MTQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQRQNAGMYLRENSMLPEDEQQ 60

Query: 192 LLSF 195
            L F
Sbjct: 61  RLLF 64


>gi|159900290|ref|YP_001546537.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893329|gb|ABX06409.1| RNA methyltransferase, TrmH family, group 3 [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 246

 Score = 44.3 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 10/148 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  +NIG + R         +   + R    +    ++SA A   +   ++ +N+ + I 
Sbjct: 105 QDPQNIGTLMRTAEIVGAHGIIFPDRRSASITPAVINASAGAVEHLYVAQI-TNIAQTIK 163

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L            N        +   V  ++      + ++ G E  GL        + 
Sbjct: 164 HLQ---------EYNIWVAGVEDDERAVDFDKANLRGALALVIGAEGPGLARLTRERCDL 214

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
           ++  P+     SLN + A  ++++    
Sbjct: 215 LVRLPMRGNVASLNAATAGSIILYHAWR 242


>gi|3023080|gb|AAC12641.1| putative rRNA methylase [Synechococcus sp. PCC 7002]
          Length = 62

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWECMEN 171
           ++FG E        +   +A ++ P+N     SLN+S +  + ++E    
Sbjct: 10  LLFGSETKASPQXLLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQ 59


>gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
           29176]
 gi|197299646|gb|EDY34161.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
           29176]
          Length = 279

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 11/167 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P+        VI+L + Q   N+G + R       T + L +      + K   S+  A 
Sbjct: 122 PENHQIRVPHVIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKVIRSTMGAV 181

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +       +L  A+  L      +   R     +         + +     +    + 
Sbjct: 182 FRMPF-FYVKDLPAAVKSLS-----SQGIRTYAAHL-----NGKNVYDEEDYTEGCAFLI 230

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  GL +E    ++ +I  P+     SLN + A  ++++E     
Sbjct: 231 GNEGNGLRDEVSECADCLIRIPMCGKAESLNAAVAAAVLMFEAGRQR 277


>gi|332876719|ref|ZP_08444477.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685278|gb|EGJ58117.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 260

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 38/163 (23%)

Query: 23  QLGENIGMVARAMWNFNLTQLR-------LVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           Q   N+G + R    F +  +        L NP+      +A   +  A   +  + +  
Sbjct: 118 QDPGNLGTIIRIADWFGIEHIFCSPDTADLYNPKTV----QATMGAM-ARVCVHYLSLTD 172

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            L+ A AD+  +Y T     + + + L+P               N  I+ G E  G++ +
Sbjct: 173 LLRTANADIP-VYGTFLDGNDMYGTELSP---------------NGLIVMGNEGKGISRD 216

Query: 136 EIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMEN 171
             +L N  +  P    +P       SLN++ A  ++  E    
Sbjct: 217 VASLINRKLYIP---NYPPERNTSESLNVAVATAIVCAEFRRR 256


>gi|300932625|ref|ZP_07147881.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 304

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L++     + + A T        ++++    A    E       + I+ G E  GLT  
Sbjct: 213 SLEQLRRRGYTVIALTPNTEE---TLMSAVALAQRRAEAEQRESRIAIMVGAEGPGLTEH 269

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +  ++   + P+     SLN++ A  +  +    
Sbjct: 270 AMRAADIRAAIPMASGTDSLNVATAAAIGFYAARH 304


>gi|262341137|ref|YP_003283992.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272474|gb|ACY40382.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 253

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               +I G E  G++ + + +S      P      SLN+S A  ++++E        S
Sbjct: 192 GPTALILGNEEKGISPKYLEISCEKAKIPAIKGISSLNVSVACGVILYEVFRQRKSQS 249


>gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
 gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
          Length = 224

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 12/169 (7%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L        +I  + Q G N+  + R      + ++  V PR+G+ S    ++SA+    
Sbjct: 13  LDQRQPDLTVITEEVQKGRNLSAIIRTCDAVGIPEVHSVVPREGFTSYNGTAASAHKWVD 72

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           I     +S    A+  +     T    +            A    E I   +   ++ G 
Sbjct: 73  IHH---YST---ALEPI-----TALTQQGYQIVAAHVDRNAKDFRE-IDYTKPTALLMGA 120

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           E WG++     L    I  P+  +  S N+S A   ++ E         
Sbjct: 121 EIWGVSEPARELVTHTIHLPMVGMIESYNVSVACAGILLEAQRQRQEKG 169


>gi|86358645|ref|YP_470537.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86282747|gb|ABC91810.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 153

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 27/170 (15%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLT-QLRL-----VNPRDGWPSEKARSSSANAD 65
                + L  P +  N G + R          L       V+ RD   S     ++A   
Sbjct: 1   MTNLRLALYQPDIPGNTGTLLRLAACLGFAVDLIEPAGFNVSDRDLKRSGMDYIAAAA-- 58

Query: 66  CVIDSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             +     +   +   A      I A+T         V  P +                +
Sbjct: 59  --LTRHASWDRFEAWHAATGRRLILASTKAAERYTDFVFRPDDV---------------L 101

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +FGRE  G+ +     ++A I  P+     S+N++ +  ++V E M  ++
Sbjct: 102 LFGRESAGVPDHVHERADACILIPMVEGQRSINVAISAAMIVGEAMRQTV 151


>gi|85373568|ref|YP_457630.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786651|gb|ABC62833.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 262

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 11/145 (7%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           PV+IL       N+G + R+   F+   +   +      S     S++ A   +  VRV 
Sbjct: 115 PVVILDQVTDPHNVGAILRSAAAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVV 174

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            NL  A+         T   R  ++  L     A +          V ++ G E  G+ +
Sbjct: 175 -NLARALD--------TLAERGYWRIGLTGNTEATL--AEALPAGPVALVLGAEGEGMRH 223

Query: 135 EEIALSNAIISFPVNPLFPSLNISQ 159
              A  +A+   P++    SLN+S 
Sbjct: 224 NIEAHCDALARLPISNAIESLNVSN 248


>gi|302326903|gb|ADL26104.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 241

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 21/176 (11%)

Query: 3   PYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P   ++ N       +LV + +   N+G + R+   F L  + L            +S++
Sbjct: 80  PGDREVANEKPIQFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSCSPDHVTVKSAA 139

Query: 62  ANADCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                 I  ++ + +  + I          I   T  +              I     + 
Sbjct: 140 RGCQEWIP-IKRWDSPFDCIKWHKENGYEIIALETGED--------------IPSINNVK 184

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   I+ G E  G+  E +A +   ++ P+     S+N++ A  +M +    N+
Sbjct: 185 WPEKGLIVLGNEELGIAPEIMAEATMKVTIPMAGRKASMNVAGAFAIMAFCLRSNA 240


>gi|147905554|ref|NP_001085673.1| RNA methyltransferase-like protein 1 [Xenopus laevis]
 gi|82184432|sp|Q6GPJ4|RMTL1_XENLA RecName: Full=RNA methyltransferase-like protein 1
 gi|49116890|gb|AAH73125.1| MGC84529 protein [Xenopus laevis]
          Length = 419

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNA----IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     ++ G E  GL+ E + L+       ++ PV P   SLN + A  ++++E    
Sbjct: 348 AQGPCAVVIGGETHGLSIESLLLAEKSNGKRLNIPVVPGIDSLNSAMAASILLFEGKRQ 406


>gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
 gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B]
 gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
          Length = 259

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I  G E  G+++E   LS+  +  P+     SLN++ A  +M +E +  +
Sbjct: 208 IAVGNEGNGVSDELYNLSDEKVKIPMPGGAESLNVAVAASIMAFEAVRQT 257


>gi|261414776|ref|YP_003248459.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371232|gb|ACX73977.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 250

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 21/176 (11%)

Query: 3   PYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P   ++ N       +LV + +   N+G + R+   F L  + L            +S++
Sbjct: 89  PGDREVANEKPIQFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSCSPDHVTVKSAA 148

Query: 62  ANADCVIDSVRVFSNLKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                 I  ++ + +  + I          I   T  +              I     + 
Sbjct: 149 RGCQEWIP-IKRWDSPFDCIKWHKENGYEIIALETGED--------------IPSINNVK 193

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   I+ G E  G+  E +A +   ++ P+     S+N++ A  +M +    N+
Sbjct: 194 WPEKGLIVLGNEELGIAPEIMAEATMKVTIPMAGRKASMNVAGAFAIMAFCLRSNA 249


>gi|213615553|ref|ZP_03371379.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 113

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 13/117 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              A+   H   A  A         L  K            G    ++FG E  GL 
Sbjct: 55  --AAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY--LMFGPETRGLP 107


>gi|319899065|ref|YP_004159158.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
 gi|319403029|emb|CBI76584.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
          Length = 271

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +I++       N+G + R+   F    +   N      S     +++ A  +I+ + V  
Sbjct: 124 IIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITV-Q 182

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           NL +A+ +L+      +     +      +           E   +G  + ++ G E  G
Sbjct: 183 NLSQALKELNQMNFISFGL---DSEGELPL-----------EIALTGNKISLVLGAESKG 228

Query: 132 L---TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L   T E +     +    +     SLN+S A  + ++   +
Sbjct: 229 LRQKTRETVYK---LARLDMPGDIKSLNVSNAATIALYAAHK 267


>gi|289434467|ref|YP_003464339.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 252

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQANLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   E A  LN+       + +I G E  G+
Sbjct: 171 WIANLEE--EGVPVIGA-----------VLD--EQAKSLNDISKRD-TLALIVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E  A  +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|303279152|ref|XP_003058869.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460029|gb|EEH57324.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 119

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            A+   E    G+ V ++ G E  GL+ E +      +  P+     SLN+  A  ++++
Sbjct: 57  NAVDAKEESEDGRGVCLVLGAEGRGLSAEALGGCQP-VKVPMPGEMESLNVGIAGGILMY 115

Query: 167 ECME 170
              +
Sbjct: 116 VMRK 119


>gi|163786199|ref|ZP_02180647.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159878059|gb|EDP72115.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 244

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 21/151 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI----- 81
           N G + R      +  + +        +     +SA A   I   +V  ++K+A+     
Sbjct: 109 NFGAIVRTAECTGVNGIIIQKKGGAPINGDTIKTSAGAIFKIPVCKV-DHIKDAVFHMQS 167

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           + +  I AT               E A      +   +   II G E  G+    + + +
Sbjct: 168 SGIKVIAAT---------------EKANDFVYDVSFKEPCAIIMGSEGRGINPSVLKVVD 212

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           A    P+     SLN+S A    ++E +   
Sbjct: 213 AKAKLPILGEIESLNVSVACGAFLYEAVRQR 243


>gi|149195112|ref|ZP_01872204.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
           TB-2]
 gi|149134825|gb|EDM23309.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
           TB-2]
          Length = 221

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 31/147 (21%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--------VIDSVRVFSNL 77
            NIG + R  +   +  L +    +       R+SS  A          ++D + +    
Sbjct: 90  GNIGAITRTAYALGIDLLIITGINELKWDRIIRTSSGAALDMKIISIKNILDVINILKT- 148

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
                    + A                +       +      + +I G E  GL  +  
Sbjct: 149 ----KGYLIVGA----------------DLGGKC--KPSRKNKIALILGNEGEGLNKKIK 186

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLM 164
              + +I+  +   F SLN+S A  ++
Sbjct: 187 QKLDEVITIEMKREFDSLNVSVAAGIL 213


>gi|323454345|gb|EGB10215.1| hypothetical protein AURANDRAFT_15819 [Aureococcus anophagefferens]
          Length = 178

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 19/164 (11%)

Query: 17  IILVDPQLGENIGMVARAMW--------NFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           ++L + +  EN+G + R+              T        +   + K   ++  A+  +
Sbjct: 25  VVLDNVRSAENVGSIFRSADCGRCLEVVTCGFT-------PNPLSTAKLAKTAFGAEAAV 77

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              R F + K A+ +L      +               AA  L    F G  V ++ G E
Sbjct: 78  AH-RHFESTKAAVEELK-AAGVSVWALETVDGAAP--YAAAPLPPGAFDGPGVALVLGNE 133

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             G+    + L +A++  P      S+N++ A   ++++ +   
Sbjct: 134 VTGVDGAVLPLVDAVVEIPTFGTKNSMNVACAATTVIFDVLRRW 177


>gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella
           paramesenteroides ATCC 33313]
          Length = 268

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           +L   +   N+G + R      +  + +   R    +     +S  A   +   RV    
Sbjct: 122 VLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNLV 181

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             +++      +++ T     +  +                 +     +I G E  G++ 
Sbjct: 182 QTVEQLKERGVWVFGTDMNGNDYRRW---------------DATGATALIIGNEGKGISP 226

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 +  ++ P+     SLN S A  L++++
Sbjct: 227 LLKKSVDETLTIPMIGHVQSLNASVAASLLIYQ 259


>gi|119577976|gb|EAW57572.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
           isoform CRA_b [Homo sapiens]
          Length = 158

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 13/104 (12%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF------PVNPLFPSLNISQ 159
           E  I+        +   ++ G E  GL+ E  A    +++       P  P   SLN+S 
Sbjct: 42  EIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP--PGLESLNVSV 99

Query: 160 AVLLMVWECMENS-----IVSSEKNVKEQNTPATKGELLSFLDY 198
           A  +++                 + +++   P+ + E LS   +
Sbjct: 100 AAGILLHSICSQRKGFPTEGERRQLLQDPQEPSARSEGLSMAQH 143


>gi|307721830|ref|YP_003892970.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979923|gb|ADN09958.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
           autotrophica DSM 16294]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       NIG + R+ +   +    +V+       E    +S  A   +    V +
Sbjct: 85  VVVLAGLTDVGNIGAIVRSAYALGV-DAIIVSGIKHLNIEPLLRTSTGALFDMPLA-VEN 142

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+   + D       +                 + + E     + V ++ G E  GLT+ 
Sbjct: 143 NIHNLLNDFKMSGFIS----------YGADMGGVDIREAKIVKKRV-LVLGNEGEGLTSR 191

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMV----WE 167
             +  + I+S  +   F SLN+S A  +++    +E
Sbjct: 192 VSSKLDNIVSIKMAHDFDSLNVSVAGAILMDRMRYE 227


>gi|260887113|ref|ZP_05898376.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|260863175|gb|EEX77675.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
          Length = 290

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             + + FG E  G+++E   ++ A +  P+     SLN++ A  L+++E 
Sbjct: 229 GRLALAFGNEGNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEA 278


>gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
 gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
          Length = 213

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           I  G E  G+++E   +++  +  P+     SLN+S A  +M++E +  S+ 
Sbjct: 162 IAVGNEGSGISDEIYNMADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQSLT 213


>gi|255660253|ref|ZP_05405662.1| RNA methyltransferase [Mycoplasma genitalium G37]
          Length = 201

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 11/162 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++N     +++L + Q   N G + R      +  +          +     +S  +   
Sbjct: 48  VENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGIIFKKNNQVPINNTVMKTSMGS--- 104

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFG 126
                 + NL + +A+L +    T      F +V+         ++ R        +I G
Sbjct: 105 ----VFYQNLVQ-VANLSYTI--TKLKEIGFWTVVSTLDPIWKPIDYRKVDFAKKILIVG 157

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            E  G+       ++  I  P+N    SLN+S A+ ++++  
Sbjct: 158 NEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAW 199


>gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
 gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
          Length = 260

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           I  G E  G+++E   +++  +  P+     SLN+S A  +M++E +  S+ 
Sbjct: 209 IAVGNEGSGISDEIYNMADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQSLT 260


>gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 310

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + ++ G E  GL+       + ++S P+     SLN S A  +++ E     
Sbjct: 256 PIVVVVGSEGKGLSRLVRQNCDEVVSIPMAGNAESLNASVAAGVVLAEISRQR 308


>gi|218130161|ref|ZP_03458965.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
 gi|317476654|ref|ZP_07935898.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987665|gb|EEC53993.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
 gi|316907117|gb|EFV28827.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 270

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 17/146 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R+     +  + L        + +A   S  +  ++    +   L + + DL F
Sbjct: 133 NIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPWTWLDGPLGK-LNDLGF 191

Query: 87  ---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                A T    ++  S+  P          + +   + I+ G E  GL+++ IA ++ +
Sbjct: 192 RTAAMALT----DDSISIDDP---------ILANEPKLAIVMGTEGDGLSHKTIAEADYV 238

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECM 169
           +  P++    SLN++ A  +  W+  
Sbjct: 239 VRIPMSHGVDSLNVAAAAAVAFWQLR 264


>gi|12045106|ref|NP_072917.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|1723134|sp|P47494|Y252_MYCGE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
 gi|3844850|gb|AAC71472.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma genitalium
           G37]
 gi|166079076|gb|ABY79694.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 242

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 11/162 (6%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           ++N     +++L + Q   N G + R      +  +          +     +S  +   
Sbjct: 89  VENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGIIFKKNNQVPINNTVMKTSMGS--- 145

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVGIIFG 126
                 + NL + +A+L +    T      F +V+         ++ R        +I G
Sbjct: 146 ----VFYQNLVQ-VANLSYTI--TKLKEIGFWTVVSTLDPIWKPIDYRKVDFAKKILIVG 198

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            E  G+       ++  I  P+N    SLN+S A+ ++++  
Sbjct: 199 NEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAW 240


>gi|297622073|ref|YP_003710210.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 243

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 14/149 (9%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L +     N+G + R    F    + L+       ++KA  +S  A   +    V  +L
Sbjct: 106 VLENLNDPGNLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGAIFKLP--IVVGDL 163

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            E++     +        ++  SV         +   I     + ++ G E  G  ++E+
Sbjct: 164 -ESLK--TLLI-------DHQMSVFIADLEGKKIGA-IPKVSKMALVLGSEAHG-PSKEV 211

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 ++ P++    SLN++ A  +++ 
Sbjct: 212 ISIGERLTIPISSGLDSLNVAVAGGILLH 240


>gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145]
 gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145]
          Length = 258

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 25/166 (15%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   +IL + Q   N+G + R+     + Q+          S +   +   A   +   +
Sbjct: 113 KADTLILENVQDPGNVGTLLRSAAAAGIEQIVCTKGSASLWSPRVLRAGMGAHFTL---Q 169

Query: 73  VFSN--LKEAIADLHF-IYATTA-RNRNNF-KSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
            F N  L++ +      +Y T++ R  + + K +  P                   I G 
Sbjct: 170 TFENIALEQILEQFQIPVYVTSSHRAESLYSKDLRKP----------------CVWILGN 213

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           E  G+++  +  + A +S P      SLN++ A  +  +E +   I
Sbjct: 214 EGQGVSDYAMQHAEA-VSIPQPGGQESLNVAIAGSICFFEMVRQRI 258


>gi|239636367|ref|ZP_04677369.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
 gi|239597722|gb|EEQ80217.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
          Length = 246

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L ++      P +     ++    V     +  +L+  I 
Sbjct: 114 QDPGNLGTLIRTADAAGI-DLIVMEKGTADPYQDKVLRASQGS-VFHIPVISESLQSYIN 171

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  +Y T                   V  + I + +   +I G E  G+    +  + 
Sbjct: 172 TFNGPVYGTA--------------LDNAVSFKEIEAQETFALILGNEGEGVDPALLEHTT 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             I+ P+     SLN++ A  +++++ 
Sbjct: 218 QNITIPIYGQAESLNVAIAGSILLYQL 244


>gi|116333650|ref|YP_795177.1| rRNA methylase [Lactobacillus brevis ATCC 367]
 gi|116098997|gb|ABJ64146.1| rRNA methylase [Lactobacillus brevis ATCC 367]
          Length = 256

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 13/147 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG + R      LT +            K   +   +   I        L EA  
Sbjct: 120 QDPGNIGTMVRTADAAGLTGVVFGKGTASRFLPKVLRAMQGSQFHIQ-------LVEA-- 170

Query: 83  DLH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           DLH +I A TAR    + + L P+         + +G    I+ G E  G+  +   L+ 
Sbjct: 171 DLHDWIGAFTARQLPVYGTNLDPQAQDYRDVPALTNG---AIVMGNEGNGMAPDLQRLTT 227

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             +  P+     SLN++ A  ++++  
Sbjct: 228 QNLYIPIKGQAESLNVAVAAGVVMFRL 254


>gi|4104449|gb|AAD02043.1| tRNA/rRNA methyltransferase [Brucella abortus]
          Length = 159

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 39/170 (22%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++A   +      ++    
Sbjct: 4   RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRALKRA--GMDYLEQA-- 56

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKE----AAIVLNERIFSGQNVG------- 122
                             A  R+   +            +VL     +    G       
Sbjct: 57  ------------------ALTRHPDWNRFDAWRKNAGRGLVLLSTKAAIPYTGYQFQEND 98

Query: 123 -IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++FGRE  G+       ++  +  P+     SLN++ +V +   E +  
Sbjct: 99  ILLFGRESAGVPEAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 148


>gi|239997256|ref|ZP_04717780.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           ATCC 27126]
          Length = 169

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 54/155 (34%), Gaps = 32/155 (20%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA--NAD-----CVIDSV 71
           L++P+   N+  + RA   + +           + + +    +   NAD      VI ++
Sbjct: 12  LINPKNPVNVASILRAAGCYGVA--------SVFYTGQRYRFAKDFNADTKAFHKVIPTI 63

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            V  +LKE + +   + A           +                  N   + G E   
Sbjct: 64  GV-DDLKEVVPEGASVVAVELVEGATPLPLF-------------EHPSNAFYLLGPEDGS 109

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +  + ++  + ++  P    F  +N++    ++++
Sbjct: 110 IGEDVLSWCDHVVYVPT---FSCMNLAATANVLLY 141


>gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 246

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-LKEAI 81
           Q   N+G + R      L  L ++      P +     ++        + + +  L   I
Sbjct: 114 QDPGNLGTLIRTADAAGL-DLIVLEKGTADPYQDKVMRASQGSVF--HIPILTTELSGFI 170

Query: 82  ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           AD    +Y T   +               V+  +I S +   ++ G E  G+ ++ ++ +
Sbjct: 171 ADFEGDVYGTALED--------------AVVYNQIPSQETFALLLGNEGEGVNDKLLSQT 216

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
              ++ P+     SLN++ A  ++++  
Sbjct: 217 TQNLTIPIYGKAESLNVAIAGSIVMYHL 244


>gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023]
          Length = 252

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI-----DSVR 72
           LVD  Q   N+G + R         + L        + K   S+  +   I     D   
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQADLFE 170

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   + A  LN+     + + ++ G E  G+
Sbjct: 171 WVGNLEE--EGVPVIGA-----------VLD--DQAKSLNDMPKR-ETLALMVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E     +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SEELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|322494359|emb|CBZ29660.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 2035

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 15/179 (8%)

Query: 4    YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSA 62
            +   L+   +  +++    +   NI  + R    F +    +V P +  +      +++ 
Sbjct: 1867 HPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIES--IVVPEKKVFEHPHFVAAAR 1924

Query: 63   NADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQN 120
            +A+  I    V   +L   +  L        R R     V+  ++ A  +  E+    + 
Sbjct: 1925 SAELWIPWEEVVPKDLPYYLEGL--------RRRGYV--VVGIEQTAASVPLEQFSFPER 1974

Query: 121  VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
              ++ G E  G+    I L +  +  P   L  SLN+  A  + ++E     +++    
Sbjct: 1975 CAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQPHP 2033


>gi|326771653|ref|ZP_08230938.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
 gi|326637786|gb|EGE38687.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
          Length = 310

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 9/162 (5%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N G + RA        + LV       + K   S+A +   +  V   + L
Sbjct: 158 VLTQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVA-L 216

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +A+  LH    T           L   E+ +              + G E  GL  E +
Sbjct: 217 DDAVTALHNAGLTVLAADGRGDFDLFEVESLLEA--------PSAWLLGNEAHGLPPEAL 268

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           + ++A++S P+     SLN++ A  + ++        +S ++
Sbjct: 269 SRADAVVSIPIYGKAESLNVAAAAAVCLYASARAQAQNSGRS 310


>gi|295425288|ref|ZP_06817991.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295065064|gb|EFG55969.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 254

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 13/151 (8%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS 75
           ++L +     N+G + R         + L +P      + K + +   +   ID   +  
Sbjct: 113 VLLDNLADPGNVGTIIRTADAAGFNGVVL-SPESVDLYNPKTQRAMQGSQFHID--IIIK 169

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L + I  L       A +   + S+L   + A  L +       +G++ G E  G+++ 
Sbjct: 170 DLTDVITQLE------ASDIPVYASMLD--KTAKKLPD-FEKVAQLGLVIGNEAHGVSDF 220

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              LS+  +  P+     SLN + A  +M++
Sbjct: 221 IANLSDTKLYIPIFGQAESLNAAVAAGIMIY 251


>gi|149371529|ref|ZP_01890945.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49]
 gi|149355156|gb|EDM43716.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49]
          Length = 153

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 28/158 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-----VFSNL 77
           +   N+G + R   N   +          +     +  +  A    ++V+      + + 
Sbjct: 19  KTPANLGALWRTAQNMGAS----------YIFTIGKRYANQASDTHNAVKSMPYFHYKSF 68

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +    L              + V   K+      E     +    + G E  GLT E I
Sbjct: 69  DDFFEHL----------PKGVRIVGVEKDDRAENLEDFNHPRRCVYLLGAEDHGLTKEAI 118

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             S+ ++ F     F SLN++ A  +++++   N  + 
Sbjct: 119 DKSHFLVQFKS--EF-SLNVAIAGSIVLYDRSRNKPLQ 153


>gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
 gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
          Length = 252

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L  + +GP ++L D Q   N+G + R         + + +      + K   S   +  
Sbjct: 101 SLPETWQGPYLVLEDIQDPGNLGTMIRTADAAAYQAVFISDKSADIYNSKTLRSMQGSHF 160

Query: 67  VID-----SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            +           ++ K+A   +  +  T A +  +++ +  P              ++ 
Sbjct: 161 HLPIYRGSMADFLASFKQA--GVRILATTLAEDSMDYRKIERP--------------ESF 204

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++ G E  G++ +    ++ ++   +     SLN++ A  +M++  
Sbjct: 205 ALVMGNEGQGISEQTAKKADDLLHIDMPGQAESLNVAVAAGIMMFNL 251


>gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067]
 gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171]
          Length = 252

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQANLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   E A  LN+       + +I G E  G+
Sbjct: 171 WVANLEE--EGVPVIGA-----------VLD--EQAKSLNDISKRD-TLALIVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E  A  +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|109947425|ref|YP_664653.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
 gi|109714646|emb|CAJ99654.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
          Length = 227

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSIKMRRDFDSLNVSVAAGIL 222


>gi|330995662|ref|ZP_08319560.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
 gi|329574721|gb|EGG56282.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
          Length = 263

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 32/167 (19%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV---FSNLK 78
           Q   N+G + R    F +      +P      + K   ++  A       RV   + +L 
Sbjct: 118 QDPGNLGTIIRIADWFGIEH-IFCSPDTADLYNPKTVQATMGA-----MARVCVHYLSLT 171

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           + +           R       V         +     S   + I+ G E  G++ +  +
Sbjct: 172 DLL-----------RAAETDTPVYGTFLDGNDMYGTELSSNGL-IVMGNEGNGISRDIAS 219

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIVSSEK 178
           L N  +  P    +P       SLN++ A  ++  E      +  ++
Sbjct: 220 LINRKLYIP---NYPLERNTSESLNVAVATAIVCAEFRRRDTIGRQE 263


>gi|332654055|ref|ZP_08419799.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
           bacterium D16]
 gi|332517141|gb|EGJ46746.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
           bacterium D16]
          Length = 261

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 20/145 (13%)

Query: 9   QNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           Q   + P+I++  +     N+G V R         + +   R    +     +SA A   
Sbjct: 105 QEKGEKPLIVVCDELSDPHNLGAVIRTADAAGAHGVIIPKRRSAGLTAVVAKTSAGAVAH 164

Query: 68  IDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +   RV  NL  A+ +L     +++ T A                     +        I
Sbjct: 165 VPVARV-PNLVAALKELQQAGVWVFGTAA--------------EGTTSLYQADLKGPAAI 209

Query: 124 IFGRERWGLTNEEIALSNAIISFPV 148
           + G E  G+        +  +S P+
Sbjct: 210 VIGSEGDGMGRLVTENCDFTVSIPM 234


>gi|145219176|ref|YP_001129885.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205340|gb|ABP36383.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
           265]
          Length = 250

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSANADCVIDSVRVF 74
           V+ L   Q   N G + R    F    L L  P      + K   SSA +   +      
Sbjct: 104 VVALDGVQDPGNAGTILRTAAWFGADAL-LSGPGTVDLYNPKTVRSSAGSLFSLPH-YSV 161

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +L + +           R + N   VL          E     +   ++ G E  G+++
Sbjct: 162 DSLTDELE----------RLKQNGYGVLCSSLEGRDFREFTDWPERKVLVVGNEANGISS 211

Query: 135 EEIALSNAIISFP---VNPLFPSLNISQAVLLMV 165
             ++L++ ++  P         SLN S +  +++
Sbjct: 212 GVLSLADRLVLIPHGRGGVRVESLNASVSAAVLL 245


>gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 265

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|146321556|ref|YP_001201267.1| rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|145692362|gb|ABP92867.1| rRNA methyltransferase, TrmH family [Streptococcus suis 98HAH33]
          Length = 125

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECM 169
           E    G     +FGRE  GL  E+    +    I  P+N     SLN+S    ++V+E +
Sbjct: 47  EDYNDGNIHYFLFGREDKGLP-EDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEAL 105

Query: 170 ENS 172
              
Sbjct: 106 RQQ 108


>gi|146319351|ref|YP_001199063.1| rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|145690157|gb|ABP90663.1| rRNA methyltransferase, TrmH family [Streptococcus suis 05ZYH33]
          Length = 125

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSN--AIISFPVNPLF-PSLNISQAVLLMVWECM 169
           E    G     +FGRE  GL  E+    +    I  P+N     SLN+S    ++V+E +
Sbjct: 47  EDYNDGNIHYFLFGREDKGLP-EDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEAL 105

Query: 170 ENS 172
              
Sbjct: 106 RQQ 108


>gi|262394780|ref|YP_003286634.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
 gi|262338374|gb|ACY52169.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
          Length = 244

 Score = 43.9 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 26/161 (16%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCV 67
             AKG +I L       N+G + R    + +  +          + K  S++        
Sbjct: 97  PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQ 156

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---II 124
           +  V + S L+EA                       P   A +  E +   +      ++
Sbjct: 157 VSLVDLPSYLEEA---------------------NLPVYGAFLEGESVHKTEFAAEGILL 195

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            G E  G+  E   L    I+ P      SLN++ A  +++
Sbjct: 196 MGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATGIIL 236


>gi|325973155|ref|YP_004250219.1| spoU rRNA methylase family protein [Mycoplasma suis str. Illinois]
 gi|325989598|ref|YP_004249297.1| SpoU rRNA methylase family protein [Mycoplasma suis KI3806]
 gi|323574683|emb|CBZ40339.1| SpoU rRNA methylase family protein [Mycoplasma suis]
 gi|323651757|gb|ADX97839.1| spoU rRNA Methylase family protein [Mycoplasma suis str. Illinois]
          Length = 253

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 17  IILVD-PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-F 74
           I++V+  Q   N G + R      +  +   +  +   +     +S      +    +  
Sbjct: 104 IVMVEKIQDPYNFGAIIRTCVAAGVNYIIYSSSNNTKLNNVVLKTSQG--YALKMQLIQV 161

Query: 75  SNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +L +A+A+L       YA  A  ++  K+  + K                 I+ G E  
Sbjct: 162 KDLSKALAELKKFNFLSYA--ASLKSPSKNYFSVKYE-----------NRTIIVLGNEGE 208

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G++       +  I  P+N    SLN+S A  ++++E +   
Sbjct: 209 GISPRLENSVDYRIKIPMNNGVESLNVSVANGILIYEVLRQW 250


>gi|319781864|ref|YP_004141340.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167752|gb|ADV11290.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 152

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 39/170 (22%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            I L  P +  N G + R  A     +    ++ P     S+KA   +      ++    
Sbjct: 6   RIALYQPDIAGNTGTILRFAACLGLGVD---IIEPAGFPLSDKALKRA--GMDYLEMA-- 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----------- 122
                             A  R+           A      + S +              
Sbjct: 59  ------------------ALTRHVDWHAFEEWRKADSHRLVLLSTKATTAYTSFSFADGD 100

Query: 123 -IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++FGRE  G+ +     ++A ++ P+     S+N++ +V ++V E +  
Sbjct: 101 VLLFGRESAGVPDPVHQAADARLTIPMQGTARSINVALSVAMVVGEAIRQ 150


>gi|256420719|ref|YP_003121372.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035627|gb|ACU59171.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 248

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 18/144 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q   N+G + R    F + Q  +  P      + K   ++  +   I  V++  +     
Sbjct: 117 QDPGNLGTIIRIADWFGIRQ-IICTPDCVDAYNPKTIQATMGS---IARVKILES----- 167

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            D+  +       +       A       + E     + + I+ G E  GL+   I+ S 
Sbjct: 168 -DISTLI------KEAGVPSYAATLHGRDITEFSKLEEGI-ILIGNESRGLSEAVISAST 219

Query: 142 AIISFPVNPLFPSLNISQAVLLMV 165
             I+ P      SLN   A  ++ 
Sbjct: 220 HKITIPRLGGAESLNAGVAAGIIC 243


>gi|242791156|ref|XP_002481702.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718290|gb|EED17710.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 536

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 46/210 (21%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +++ S    VI+L       N+G V R+ +   +  L L        +     +SA A 
Sbjct: 317 EEVEKSRFPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPLTPVTIKASAGAA 376

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL---APKEAAIVLN---------- 112
              +++ +F     A +++ FI     R+R N        +P+  + +            
Sbjct: 377 ---ENMTIFK----AKSEIDFI----RRSRENGWRFYAADSPQNVSDLAATHGTLADYTA 425

Query: 113 ----------ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP--------- 153
                       + +     ++ G E  GL     A ++  +S P   + P         
Sbjct: 426 TVAANGSSPSASLLTSAPTVLMLGNEGTGLLPRIKAQADGYVSIPGARIRPDLGINDAAR 485

Query: 154 --SLNISQAVLLMVWECMENSIVSSEKNVK 181
             SLN+S A  L++ E      +     V 
Sbjct: 486 VDSLNVSVAAALLM-EMFMRVPLRVASAVP 514


>gi|157120535|ref|XP_001653652.1| hypothetical protein AaeL_AAEL009023 [Aedes aegypti]
 gi|108874927|gb|EAT39152.1| conserved hypothetical protein [Aedes aegypti]
          Length = 462

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSV 71
              ++  + +   N+G + R+  +  + ++ L+         K     A A     +   
Sbjct: 290 PITVVCDNVREPNNLGSILRSCASIPVDRVILLKGCTHPWDPKCLRGGAGAHFRTSVVGP 349

Query: 72  RVFSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            V   L E + ++  F+ A     R+    VL+  + A       F  +++ ++ G E  
Sbjct: 350 VVMDELAELLPSNPTFLVADNRSERDEESFVLSRYDKANY-----FDMEHMVLVIGGETH 404

Query: 131 GLTNEE------------IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G++++             +  S  ++  P+     SLN + A+ +++ E    
Sbjct: 405 GVSSDVRRYIRQLQEDSNVGNSLYLVHIPLENGVESLNTASAISVILCEIRRQ 457


>gi|54887339|gb|AAH38288.1| Rnmtl1 protein [Mus musculus]
          Length = 413

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +G    ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E     
Sbjct: 340 TGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 399

Query: 173 IVSSEKNVKEQNT 185
            +  E   ++++ 
Sbjct: 400 RIKVEDLSRDRSY 412


>gi|306830168|ref|ZP_07463352.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
 gi|304427694|gb|EFM30790.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
          Length = 246

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV---IDSVRVFSNLKE 79
           Q   N+G + R       T   +V+ +           S         I  + + + ++E
Sbjct: 111 QDPGNVGTMIRTADATGFTG-VIVSDKSADIHSLKTLRSMQGSHFHLPIYRMSLATFIEE 169

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A      I ATT    +     L+P E             N  ++ G E  G+++     
Sbjct: 170 AKKSNLPILATTLSKESKDYRELSPLE-------------NFALVMGNEGQGISSVMAES 216

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ ++   +     SLN++ A  ++++
Sbjct: 217 ADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|270290417|ref|ZP_06196642.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|304384701|ref|ZP_07367047.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
 gi|270281198|gb|EFA27031.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|304328895|gb|EFL96115.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
          Length = 256

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 11/160 (6%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           ++ N   G  ++L + Q   NIG + R       T +   +    + + K   +   +  
Sbjct: 104 EMPNDTTGQWLLLDNVQDPGNIGTMVRTADAAGFTGVIFGSGTADFYNPKILRAMQGSQY 163

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +   R+  NL++ I   H        ++  + S+L   E A      I + ++  +I G
Sbjct: 164 HLQLKRL--NLQKWIEACHQA------HQAVYGSILD--EHA-QSYRDIDAPKDFSLIMG 212

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E  G++ E +  ++  +  P+     SLN++ A  ++++
Sbjct: 213 NEGNGMSPELVKATDCNLYIPIKGNAESLNVAVAAGVLMF 252


>gi|76800290|ref|ZP_00782002.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
          agalactiae 18RS21]
 gi|76584510|gb|EAO61403.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
          agalactiae 18RS21]
          Length = 93

 Score = 43.9 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--F 74
          I+L +PQ+  N G +AR     N   L ++ P      +K    +       D + V  +
Sbjct: 20 IVLFEPQIPANTGNIARTCAATNAP-LHIIRPMGFPIDDKKMKRA--GLDYWDKLDVSFY 76

Query: 75 SNLKE 79
            L+E
Sbjct: 77 DGLEE 81


>gi|167644668|ref|YP_001682331.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167347098|gb|ABZ69833.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 156

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 15/164 (9%)

Query: 19  LVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           L  P + +N+G   R  A     L    ++ P     ++K+   +A     +D    +  
Sbjct: 5   LFQPGIPQNVGAAIRLGACLGVGLD---VIEPCSFPLNDKSLKRAA-----LD----YGP 52

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           L   I    +     A  R   + +L   +A    ++  F   +  ++FG E  G   E 
Sbjct: 53  LTHMILHASWAAFLAAPQRREGRLLLFTTKATTPFHKFDFQAGDT-LLFGNESRGAPPEV 111

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
              + + +  P+ P   S+N++    + + E +  +    +  +
Sbjct: 112 HDAAFSRLMIPLRPEARSMNLATTAAMALGEALRQTDGFPQVQM 155


>gi|154247282|ref|YP_001418240.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154161367|gb|ABS68583.1| RNA methyltransferase, TrmH family, group 3 [Xanthobacter
           autotrophicus Py2]
          Length = 288

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 16/164 (9%)

Query: 5   APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           +P+L++ AK  ++ +L       N+G + R+   F ++ +                 + +
Sbjct: 128 SPRLKDIAKTDLVLVLDQITDPHNVGAIVRSAAAFAVSAIV---TTARHSPAATGVLAKS 184

Query: 64  ADCVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           A   ++ V   + +NL  A+ +L          + N   V+          E       +
Sbjct: 185 ASGGLEHVPFCLVTNLARALTEL----------KENGMLVVGLDSEGPADLEDTPMRAPL 234

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            ++ G E  GL        + +    +     SLN+S A  L +
Sbjct: 235 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSL 278


>gi|330839114|ref|YP_004413694.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
 gi|329746878|gb|AEC00235.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
          Length = 273

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             + + FG E  G+++E   ++ A +  P+     SLN++ A  L+++E 
Sbjct: 212 GRLALAFGNEGNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEA 261


>gi|329889847|ref|ZP_08268190.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845148|gb|EGF94712.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 269

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 12/142 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F    + L          KA   S  A  V+ +        EA+ DL  
Sbjct: 134 NMGGLFRNAAAFGAGAVLLDRTCCDPFYRKAIRVSVGA--VLRTPMAMGLEAEAMIDL-- 189

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                 + R      L P  +A      +  G+   ++ G E  GL  + IA     +  
Sbjct: 190 -----LQGRGFEVLALTP--SAEQTLAELKPGRRTALLLGSEGPGLPRDIIARC-RPVGI 241

Query: 147 PVNPLFPSLNISQAVLLMVWEC 168
            +   F SLN++    + +   
Sbjct: 242 RMAGGFDSLNVAATSAVALHHL 263


>gi|307325496|ref|ZP_07604698.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306888965|gb|EFN19949.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 272

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83
           N G + R+     +    L++P    P   ++   S  A   +   R+  +    EA+ D
Sbjct: 132 NTGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLESWPRGLEAVRD 190

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNA 142
             F               L P E A  +++      + V ++ G E  GL+ + +  ++ 
Sbjct: 191 AGFKI-----------LALTPDEKATTIDDAAPHRLERVALMLGAEGDGLSTQALMAADE 239

Query: 143 IISFPVNPLFPSLNISQ 159
            +  P+     SLN+  
Sbjct: 240 WVRIPMAHGVDSLNVGA 256


>gi|301096946|ref|XP_002897569.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107029|gb|EEY65081.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 719

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 91  TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150
             R+R   + +L+      +L+ R  S   + +  GRE+ G+  E + L +  +  P   
Sbjct: 630 CRRSRLGHRILLS--RWVALLSRRSRSDTEMVLALGREKEGIPVEVLQLVDVCVEIPQFG 687

Query: 151 LFPSLNISQAVLLMVWECMENSIVSSE 177
           L  SLN+  +  L++WE  +  ++S  
Sbjct: 688 LVRSLNVHVSGPLVLWEYTQQQLMSGA 714


>gi|254518665|ref|ZP_05130721.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226912414|gb|EEH97615.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 260

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 23/158 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSVRVFSN 76
           Q   N+G + R      +  + L        ++K   S+  +   +      +   +   
Sbjct: 120 QDPGNLGTIIRTGHAAGVDGIILTKGTVDIYNDKTIRSTMGSIFYVPIFYDDEDFSIIKK 179

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           LK+    +  +  TT+             E +    E    G+ + +  G E  G++NE 
Sbjct: 180 LKD--NGVALV--TTS------------LEESKNFFEENLKGKIM-LAVGNEGNGISNEL 222

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             L++  +  P+     SLN++ A  ++++E +  +++
Sbjct: 223 FELASKKVKIPMPGGAESLNVAIATSIILFEKVRQNLI 260


>gi|187918381|ref|YP_001883944.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
 gi|119861229|gb|AAX17024.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
          Length = 244

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 13/172 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARS 59
           +  +  + Q+     ++IL   +  +N G + R    FN+  L + + R     +     
Sbjct: 81  LEEFLEEFQHQNNVFILILDGIEDPQNFGAILRTSEQFNI-DLVITSQRRSAKDNATILR 139

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +S+ A   ++ + V  N+   I             + N   + A       +N    +  
Sbjct: 140 TSSGASQYVNKL-VVPNINNVIK----------YLKKNGFWIYASDIKGKAINTTPINDT 188

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + +I G E  G+       S+ ++  P      SLN+S +  ++++E    
Sbjct: 189 KIALIMGNEGKGIHKLIKENSDFLVRIPTKGKIDSLNVSVSTGILIFEIKRQ 240


>gi|309357472|emb|CAP35827.2| hypothetical protein CBG_18354 [Caenorhabditis briggsae AF16]
          Length = 645

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 40/155 (25%)

Query: 25  GENIGMVARAMWNFNLTQLRLV---NPRDGWPSEKARSSSANADCVID----------SV 71
             N+G + R+ W F    + LV    P+   PS     SS  A   +             
Sbjct: 142 PGNLGAIGRSAWFFGADGVGLVKGRGPKSVTPS--MIKSSCGALEHLPVQQFEGFHEFRD 199

Query: 72  RVFSNLKEAIADLHFIYA----TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           ++ SN  E +A    + A     TA++ + +K                   + VGI+ G 
Sbjct: 200 QIKSNGGEIVATCDPLAAKKAGITAKSLDQWKPH-----------------KTVGIVLGD 242

Query: 128 ERWGLTNEEIALSNAIISF-PVNPLFP---SLNIS 158
           E  G++   + L + +IS  PV        SLN+S
Sbjct: 243 EGVGISRGILNLCDTVISIAPVGEHQSNVTSLNVS 277


>gi|260184496|ref|ZP_05761970.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           CPHL_A]
          Length = 255

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 31  DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 90

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 91  VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 136

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            E  GL+       + ++S P+     SLN S A  +++
Sbjct: 137 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175


>gi|325120007|emb|CBZ55560.1| rRNA methylase, related [Neospora caninum Liverpool]
          Length = 513

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E     +  + S + +  I G E  GL+   +      ++ P++ L  SLN+  A  +++
Sbjct: 410 ERPEAFHGAVMSHRGICCILGNESRGLSEVILQHCRR-VALPMSSLLDSLNVGIAGGIVM 468

Query: 166 WECME 170
           +E  +
Sbjct: 469 YEMKK 473


>gi|322501925|emb|CBZ37008.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 2045

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 13/178 (7%)

Query: 4    YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            +   L+   +  +++    +   NI  + R    F +  L  V  +  +      +++ +
Sbjct: 1877 HPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLV-VPEKKVFEHPHFVAAARS 1935

Query: 64   ADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNV 121
            A+  I    V   +L   +  L        R R     V+  ++ A  +  E+    +  
Sbjct: 1936 AELWIPWEEVMPKDLPGYLEGL--------RRRGYV--VVGIEQTAASVPLEQFSFPERC 1985

Query: 122  GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
             ++ G E  G+    I L +  +  P   L  SLN+  A  + ++E     +++    
Sbjct: 1986 AVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQSHP 2043


>gi|294778614|ref|ZP_06744036.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294447563|gb|EFG16141.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 251

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 33/162 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78
           Q   N+G + R    F +  +          + K   ++  A   +  V+V       L 
Sbjct: 111 QDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 167

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E++ D+  +Y T                   ++     S   + I+ G E  G++ E   
Sbjct: 168 ESLTDIP-VYGT--------------FLNGNIIYAESLSAHGL-IVMGNEGKGVSPEVER 211

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173
           L N  +  P    +P       SLN++ A  ++  E     +
Sbjct: 212 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 250


>gi|166197675|ref|NP_899086.2| RNA methyltransferase-like protein 1 [Mus musculus]
 gi|81889274|sp|Q5ND52|RMTL1_MOUSE RecName: Full=RNA methyltransferase-like protein 1
 gi|56800171|emb|CAI35103.1| RNA methyltransferase like 1 [Mus musculus]
 gi|148680911|gb|EDL12858.1| RNA methyltransferase like 1 [Mus musculus]
          Length = 418

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +G    ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E     
Sbjct: 345 TGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 404

Query: 173 IVSSEKNVKEQNT 185
            +  E   ++++ 
Sbjct: 405 RIKVEDLSRDRSY 417


>gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
           43017]
 gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
           43017]
          Length = 312

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 9   QNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           + S + P+++ L       N+G + R+   F    + L + R    +  A  +SA A   
Sbjct: 152 RESGEPPLLVALDGVTDPRNLGAIIRSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAAR 211

Query: 68  ID---SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           +    +  +   LKE  A+   I    A             + +  ++        + ++
Sbjct: 212 LPVGMATNLTRQLKEWAAEGLLIAGLDA-------------DGSTDIDTMNIDVDPLVVV 258

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            G E  GL+       +  +S P+     SLN S A  +++ E 
Sbjct: 259 VGSEGRGLSRLVRETCDFTVSIPMASGVESLNASVAGAVLLAEI 302


>gi|241951390|ref|XP_002418417.1| 21s rRNA [GM2251] 2'o-methyltransferase; mitochondrial large
           ribosomal RNA ribose methylase, putative; ribose
           methyltransferase, putative [Candida dubliniensis CD36]
 gi|223641756|emb|CAX43718.1| 21s rRNA [GM2251] 2'o-methyltransferase [Candida dubliniensis CD36]
          Length = 440

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L +    +N+G + R+ + F +  + + N         A  +SA A  +ID  +  S+LK
Sbjct: 270 LDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIYQTGSSLK 329

Query: 79  --EAIADLHF-IYATTARN------------RNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
             +++    + + +T+ R                 +  L  K   +     I     V +
Sbjct: 330 FIDSVRQSGWHVISTSGRPTGAKPREEVNDDLEIPEPHLKNKFIELQDLRTILRKTPVML 389

Query: 124 IFGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMV 165
           I G E  G+       S+ ++  P     + +  SLN   A  +++
Sbjct: 390 IIGSEGSGVRTNMKMRSDYLVGIPKLRRNDNIVDSLNAGVATGVIL 435


>gi|121601762|ref|YP_989293.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120613939|gb|ABM44540.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 271

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 24/154 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR----- 72
           +L      EN+G + R    F    + +              SS  A   I   +     
Sbjct: 126 VLCGISNNENMGAIFRNAAAFASYGIIVDKTSCDPLDRTVIRSSVGATLRIPYTQGNDIE 185

Query: 73  -VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +   L +A               N     L+P  +A    +   + ++  +I G E   
Sbjct: 186 SIIKTLSDA---------------NFHLYALSP--SAPRYLKEAKTMKHTALILGTEGDS 228

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           L    +  S  I+  P+   F SLNI+ A  L +
Sbjct: 229 LPTHVLQKS-EILRIPMAYGFDSLNIATASGLAL 261


>gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
 gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
          Length = 257

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 13/169 (7%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSS 61
           P A ++  + +G  ++L   Q   N+G + R       T   +V  R       K   S 
Sbjct: 98  PDAHRVPANIQGAWLLLDRVQDPGNVGTMVRTADAAGFTG-VVVGDRSADIFGPKVVRSM 156

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   +    +  +L + I D   + A                  A      +  GQ  
Sbjct: 157 QGSQFHL--TLLEGDLHKWIQDFKQLGA---------PVYGTQLNPAAKNFRDVHPGQTF 205

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            +I G E  G+  + +  + A +  P+     SLN++ +  +++++   
Sbjct: 206 ALIMGNEGQGMAADLLKETTANLYIPMRGDAESLNVAVSAGILMFQLNR 254


>gi|262277080|ref|ZP_06054873.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
 gi|262224183|gb|EEY74642.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
          Length = 242

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R+   F++  L +        SE    S++     ID + + SNL   I  L  
Sbjct: 108 NIGSIIRSCVAFDVKCLIVEKNNFRAGSELMNKSASGGMEYID-IYLVSNLNNVIKVLQ- 165

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                   +N +       E+   + + I   +    IFG E  G+ +     S+ IIS 
Sbjct: 166 --------QNAYWVYSLDGESNKNIFD-IKFNKKSAFIFGSEGDGIKSLVKKNSDEIISI 216

Query: 147 PVNPLFPSLNISQAVLLMV 165
           P+N    SLN+S +V +++
Sbjct: 217 PINKKIESLNLSNSVSIVL 235


>gi|315498163|ref|YP_004086967.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315416175|gb|ADU12816.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 159

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76
           L  P + +N+G   R     ++  L ++ P     S++A   +  A        V    +
Sbjct: 5   LFQPDIPQNLGSALRLCACLDVA-LDVIEPCGFPLSDRAIRRA--AMDYGGQADVTRHDS 61

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS----GQNVGIIFGRERWGL 132
               +            NR +                  +     G +  ++ GRE  G+
Sbjct: 62  WAAFL------------NRRDDWPQDTRIVLFTTKGAEPYQNFQFGPHDILLMGRESAGV 109

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            ++    + A +  P+ P   S+N+  A  + + E +  +   +    
Sbjct: 110 PDDVHNAAEARLLIPMRPGMRSINVINAAAMALGEALRQTQGFAPTTP 157


>gi|118100282|ref|XP_415864.2| PREDICTED: similar to RNA methyltransferase like 1 [Gallus gallus]
          Length = 407

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 75/233 (32%), Gaps = 54/233 (23%)

Query: 3   PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++        I+L+  + +   N+G + R+       ++ L          K   +
Sbjct: 171 PDHAKMSYPTAQLPIVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRA 230

Query: 61  SANADCVIDSVRVFSNLK-EAI-----ADLHFIYA-------------TT---ARNR--- 95
              A      V + ++L  E++     + +    A             T+    R+    
Sbjct: 231 GMGAHF---RVPIVADLDWESVPSNLPSGVQVCVADNKDLGAQAETEPTSQGAGRSGSHS 287

Query: 96  NNFKSVLAPKEAAI-------------VLNERIFS-------GQNVGIIFGRERWGLTNE 135
            N K+ + PK  A                +E                ++ G E  GL+ +
Sbjct: 288 GNPKAPVKPKRKAAPPEHKDEEGTEGVCASELAAQYYYENWIQSPAAVVVGGETHGLSPD 347

Query: 136 EIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQN 184
            + L+ +     +  PV P   SLN + A  ++++E        + K   E+ 
Sbjct: 348 ALHLAASTGGKRLVIPVVPGVDSLNSAVAAAIVLFEGKRQLQWRTHKQDNEKQ 400


>gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus anthracis CI]
 gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 254

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|296535160|ref|ZP_06897385.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296264512|gb|EFH10912.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 77

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             V  E +   + + ++ G E  GL    IA   A ++ P +    SLN+S A  +++  
Sbjct: 8   GGVAPEALPRDRPIVLVMGNEEQGLPEASIAACAARVTLPGSGAVESLNVSVAAAVLMHA 67

Query: 168 C 168
            
Sbjct: 68  L 68


>gi|295425603|ref|ZP_06818290.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
 gi|295064619|gb|EFG55540.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
          Length = 251

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 12/150 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   N+G + R+     +  + +        +     +S  A   +   RV         
Sbjct: 110 EDPHNLGSILRSADATGVDAIIIPKRHASGLTSVVAKTSTGAIDYVPVARV--------- 160

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
             + +  TT   +     +           +   +G+ V ++ G E  G+        + 
Sbjct: 161 --NNLVQTTKNLKKRGYWIFGTDMKGTDYRQWNANGKTV-LVIGNEGKGIAPLLKKQMDQ 217

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
            ++ P+     SLN S A  +++++ + + 
Sbjct: 218 TLTLPMVGHVQSLNASVATGILLYQMLNSR 247


>gi|218905788|ref|YP_002453622.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
 gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
 gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
 gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
 gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
 gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
 gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 265

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
 gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
          Length = 265

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
 gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           A1055]
 gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
          Length = 254

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 254

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
 gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
          Length = 278

 Score = 43.9 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 36/177 (20%)

Query: 17  IILVDPQLGENIGMVARAM--WNFNLTQLRL-----VNPRDGWPSEKARSSSANADCVI- 68
           +IL   Q   N+G + R     N       +     V+P     + K   ++  A   + 
Sbjct: 124 VILDRIQDPGNMGTIIRTAESAN---ADAVIITKGSVDPY----NSKTLRATMGAIFHMP 176

Query: 69  ----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
               D  R   +LKE   ++  I A    + +  K+ +            I    ++GII
Sbjct: 177 IIQCDDDRWLDDLKE--NEVKLIAA----DLDTDKTYID-----------IDYNTSIGII 219

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
            G E  G++   ++  +  +  P+     SLN S A  +++++  E        +V+
Sbjct: 220 IGNEANGISEALLSKVDQRVIIPILGKIESLNASVAASILIYKAAEEKYFKHPNSVR 276


>gi|224532019|ref|ZP_03672651.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
           VS116]
 gi|224511484|gb|EEF81890.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
           VS116]
          Length = 246

 Score = 43.9 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +N+
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKITV-ANI 158

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              I  L          +N F  + A       +N+   + + + +I G E  G+     
Sbjct: 159 NNTINFL---------KKNGFW-IYAGDVKGQDINKIKINDRKIALILGNEGRGVHKLIK 208

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             S+ +I  P +    SLN+S +  ++++E    
Sbjct: 209 ENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|325068620|ref|ZP_08127293.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
          Length = 286

 Score = 43.9 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83
           N+G   R+     +    LV PR   P   ++   S      +   R+  +  + E  A 
Sbjct: 146 NVGAAFRSAAALGI-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWPAMDELHAQ 204

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              + A          + +A  E A            V ++ G E  GL++  I  ++ +
Sbjct: 205 GFTVAALA-----LSDTSVALDEFAA-SAACTGVDSRVAVVLGTEGDGLSHRTITAADEV 258

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECM 169
           +  P+     SLN++ A  +  WE  
Sbjct: 259 VRIPMAGGVDSLNVAAAAAVAFWELR 284


>gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120]
 gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120]
          Length = 252

 Score = 43.9 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQADLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   + A  LN+     + + ++ G E  G+
Sbjct: 171 WIANLEE--EGVPVIGA-----------VLD--DQAKSLNDMPKR-ETLALMVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E     +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|254830028|ref|ZP_05234683.1| rRNA methylase [Listeria monocytogenes 10403S]
          Length = 252

 Score = 43.9 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQANLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   + A  LN+       + ++ G E  G+
Sbjct: 171 WIANLEE--EGVPVIGA-----------VLD--DQAKSLNDMTKRD-TLALMVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E     +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|254828578|ref|ZP_05233265.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258600976|gb|EEW14301.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
          Length = 252

 Score = 43.9 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQANLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   + A  LN+       + ++ G E  G+
Sbjct: 171 WIANLEE--EGVPVIGA-----------VLD--DQAKSLNDMTKRD-TLALMVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E     +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
           43531]
 gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
           43531]
          Length = 276

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 21/155 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79
           Q   N+G + R       + + L+         K   ++  +   +  V      +E   
Sbjct: 133 QDPGNVGTILRTADAAGASGVILLRGCADVYGSKVVRAAMGSLFYLPFVTGVD--EEDLV 190

Query: 80  --AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A  ++   YA                  A  L+      +   ++ G E  G++ E +
Sbjct: 191 RFAKENVLCFYAAACDTDGVTH-------FAAELS------RPSLVVLGNEANGVS-ERL 236

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   +  P+     SLN++ A   +++E +   
Sbjct: 237 LRAGQHLYVPMCGRAESLNVAAAATAILYEAIRQR 271


>gi|33322427|gb|AAQ06939.1|AF496269_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 83

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     + +I G E  GL  + IA S+  I  P+     SLN++ A  L  WE  + 
Sbjct: 25  LKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAERVDSLNVAAASSLAFWEVKKG 81


>gi|330685097|gb|EGG96763.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU121]
          Length = 246

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L ++      P +     ++    V     +  +L+  I 
Sbjct: 114 QDPGNLGTLIRTADAAGI-DLIVMEKGTADPYQDKVLRASQGS-VFHIPVISESLQSYIN 171

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  +Y T                   V  + + + +   +I G E  G+    +  + 
Sbjct: 172 TFNGPVYGTA--------------LDNAVSFKEVEAQETFALILGNEGEGVDPALLEHTT 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             I+ P+     SLN++ A  +++++ 
Sbjct: 218 QNITIPIYGQAESLNVAIAGSILLYQL 244


>gi|94270958|ref|ZP_01291859.1| tRNA (guanine-N(1)-)-methyltransferase [delta proteobacterium
           MLMS-1]
 gi|93450602|gb|EAT01723.1| tRNA (guanine-N(1)-)-methyltransferase [delta proteobacterium
           MLMS-1]
          Length = 429

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 39/192 (20%)

Query: 5   APQLQNSAKGPVIILVD-P---QLGENIGMV---------ARAMWNFNLTQLRLVNPRDG 51
           AP  +N      I LV  P   + GE IG           AR    + + +  LV P   
Sbjct: 241 APAERNWLGRLDIALVHYPVYNRTGEVIGSAVTNLDIHDIARCGRTYGIGRFYLVTPYAD 300

Query: 52  WPSEKARSSSA----NADCV-------IDSVRVFSNLKEAIADLH-------FIYATTAR 93
                A   +         +       ++ V V ++L +    +         +  T+AR
Sbjct: 301 QQELVAELLAHWLDGKGGELNPARKSALELVEVVADLAQLYQRVTARRGEAPLVVGTSAR 360

Query: 94  NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII-SFPVNPLF 152
            +   +  L  ++    L +R+ +GQ   ++ G   WGL  + +   +  +        +
Sbjct: 361 PQGGRQ--LEYRQ----LRQRLAAGQPALLLLGT-AWGLAAQALEGIDCFLPPIDGAGDY 413

Query: 153 PSLNISQAVLLM 164
             L +  A  ++
Sbjct: 414 NHLAVRSAAAIV 425


>gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM
           1279]
 gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM
           1279]
          Length = 238

 Score = 43.5 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
           ++Y T+ +              A      +   + + ++ G E  G+        + +  
Sbjct: 163 WVYGTSGK--------------ASKTIAELDYQRPLALVIGSEGEGMRRLVAEHCDELAR 208

Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
            P++    SLN + A+ +++++ 
Sbjct: 209 IPLSEGAESLNAAVALGVVLYQA 231


>gi|158291898|ref|XP_313427.4| AGAP003655-PA [Anopheles gambiae str. PEST]
 gi|157017508|gb|EAA08963.4| AGAP003655-PA [Anopheles gambiae str. PEST]
          Length = 378

 Score = 43.5 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 31/181 (17%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
              ++  + +   N+G + R+    ++ ++ L+         K     A A      V +
Sbjct: 202 PVTVVCDNIREPNNLGSIVRSCAAVSVREVILLKGCAHPWDLKCLRGGAGAHF---RVPI 258

Query: 74  FSNLKE------AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ--NVGIIF 125
           +  ++         A   F+ A      +N K             +RI  G   +V ++ 
Sbjct: 259 YGPIEAYQLPEHVRAGSIFVVA------DNKKPTDERNGFRWKHYDRIDYGSADHVVLVI 312

Query: 126 GRERWGLTNEEIALS-------------NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E +G++ ++I                  +   P+     SLN + A+ ++++E     
Sbjct: 313 GGETYGVS-DDIRRCLTQNDGEQAPQDRKFVAHIPLANGVESLNTASALSVILYEMRRTL 371

Query: 173 I 173
           +
Sbjct: 372 L 372


>gi|319405240|emb|CBI78845.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
           15-3]
          Length = 271

 Score = 43.5 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 13/159 (8%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           LQN  +  +I +L      +N+G + R    F  T + +          K+   SA A  
Sbjct: 115 LQNLPEKALISVLCGISNHDNMGAIFRNAAAFASTGIIIDKTSCDPLYRKSIRVSAGA-- 172

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                      +    D+  I  T   N N     L+P  +A    +   + ++  +IFG
Sbjct: 173 ----ALNVPYTQG--DDIDSIV-TALSNANFHLYALSP--SASRYLKDAKATKHTALIFG 223

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            E  GL    +  S   +  P+   F S+N++ A  L +
Sbjct: 224 TEGNGLPAHILQKS-ETLRIPMAYGFDSINVATASGLAL 261


>gi|254884507|ref|ZP_05257217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640801|ref|ZP_07995514.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|254837300|gb|EET17609.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387613|gb|EFV68479.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 251

 Score = 43.5 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 33/162 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78
           Q   N+G + R    F +  +          + K   ++  A   +  V+V       L 
Sbjct: 111 QDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 167

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E++ D+  +Y T                   ++     S   + I+ G E  G++ E   
Sbjct: 168 ESLTDIP-VYGT--------------FLNGNIIYAESLSAHGL-IVMGNEGKGVSPEVER 211

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173
           L N  +  P    +P       SLN++ A  ++  E     +
Sbjct: 212 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 250


>gi|226506254|ref|NP_001145273.1| hypothetical protein LOC100278565 [Zea mays]
 gi|195653915|gb|ACG46425.1| hypothetical protein [Zea mays]
          Length = 286

 Score = 43.5 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 70/173 (40%), Gaps = 17/173 (9%)

Query: 4   YAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
            A  ++ S +  +++  LV+ ++  N+  + R    F    L  V  +     ++ R  S
Sbjct: 123 AAETIKQSRQELIVVASLVE-RIP-NLAGLTRTCEVFRAAGLV-VADKSVLQDKQFRLIS 179

Query: 62  ANADCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQ 119
             A+  +    V   ++K  +           R R +  SV+  ++ A  +  +R     
Sbjct: 180 VTAEKWLPVTEVPVDSVKAYLE----------RKRGDGYSVIGLEQTANSMPLDRFGFPD 229

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              ++ GRE+ G+  + I + +A +  P   +  SLN+  +  + VWE     
Sbjct: 230 RTVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWEYTRQQ 282


>gi|90418297|ref|ZP_01226209.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337969|gb|EAS51620.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 166

 Score = 43.5 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 26/179 (14%)

Query: 1   MTPYAP-QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           M P +  +L     G  + L  P +  N G + R      L  + ++ P     S++A  
Sbjct: 1   MKPDSTDKLFQEGPGISLALYQPDIAGNTGTIMRLGACLGLP-VEIIEPAGFDLSDRALK 59

Query: 60  SSANADCVIDSVRVFSNLKEAIA-------DLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
            +      +   R+  ++  A             +  TT  +         P +      
Sbjct: 60  RA--GMDYLAMSRLVRHVDFAAFDAARRAAGRRIVLFTTRSSEIYTDFTYEPGDV----- 112

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                     ++FGRE  G+T+   A ++A ++ P+     S+N++ A  +   E +  
Sbjct: 113 ----------LMFGRESAGVTDAIHATADASVTIPMEGGGRSINLAVAAGMAAGEVLRQ 161


>gi|54025941|ref|YP_120183.1| hypothetical protein nfa39710 [Nocardia farcinica IFM 10152]
 gi|54017449|dbj|BAD58819.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 155

 Score = 43.5 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 18/146 (12%)

Query: 22  PQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI 81
           P+   N+G + R+   +  + L  +  R   P       + NA  +      + ++ + I
Sbjct: 13  PKHEVNVGTLWRSAMTYQASMLATIGSR-YKPQASDTCRAHNAIPL----HHYRDIDDLI 67

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI-IFGRERWGLTNEEIALS 140
           A  H  Y            ++  +  A  ++   F+     + + G E  GL    +   
Sbjct: 68  A--HLPYGC---------PLVGVELDARAVSLNEFTHPVRALYLLGAEDHGLPAAVLDRC 116

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVW 166
           + ++  P +P   SLN+S A  L++ 
Sbjct: 117 HHVVQIP-SPSPWSLNVSVAGSLVMH 141


>gi|319442536|ref|ZP_07991692.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 281

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 94  NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP 153
            R      + P      L + +     V ++ G E  GLT   +  ++     P++P   
Sbjct: 206 ERGYRVVAMTPNTD-NTLADAVRGADKVAVMVGAEGPGLTEHAMRAADVRAKIPMSPGTD 264

Query: 154 SLNISQAVLLMVW 166
           SLN++ +  +  +
Sbjct: 265 SLNVATSAAVGFY 277


>gi|332362244|gb|EGJ40044.1| SpoU rRNA methylase [Streptococcus sanguinis SK1056]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 26/50 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++  ++ G E  G++ E    ++ ++   +N    SLN++ A  ++++  
Sbjct: 196 ESFALVMGNEGQGISPEMTEAADILVHISMNGQAESLNVAVAAGILIFHL 245


>gi|325690945|gb|EGD32945.1| SpoU rRNA methylase [Streptococcus sanguinis SK115]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 53/146 (36%), Gaps = 11/146 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         + + +      + K   S   +   +  V          A
Sbjct: 111 QDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLP-VYRMDT-----A 164

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D   +  ++         + +   +A +    + S ++  ++ G E  G++ E  A ++ 
Sbjct: 165 DFIILAQSSG-----LPILASTLSSASIDYREVGSKESFALVMGNEGQGISPEMTAAADI 219

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
           ++   +     SLN++ A  ++++  
Sbjct: 220 LVHISMKGQAESLNVAVAAGILIFHL 245


>gi|319902170|ref|YP_004161898.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319417201|gb|ADV44312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 253

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 35/165 (21%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN-LKE- 79
           Q   N+G + R    F +      +P      + K   ++      I  V++    L E 
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDAYNPKTVQATMGG---IARVKLHYTPLPEL 167

Query: 80  --AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A+  +  +Y T     + +   L+                   I+ G E  G+  E  
Sbjct: 168 ICALKGIP-VYGTFLDGEDIYCQPLS---------------SYGLIVMGNEGNGIGKEVE 211

Query: 138 ALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIVS 175
            L N  +  P    +P       SLN++ A  ++  E    + + 
Sbjct: 212 QLINRRLYIP---NYPADRQTSESLNVAIATAVVCAEFRRQAALP 253


>gi|67523001|ref|XP_659561.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
 gi|40745966|gb|EAA65122.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
 gi|259487316|tpe|CBF85894.1| TPA: RNA methyltransferase, TrmH family family (AFU_orthologue;
           AFUA_4G13450) [Aspergillus nidulans FGSC A4]
          Length = 617

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 50/193 (25%)

Query: 8   LQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            Q   + PV++L    VD     N+G + R+ +   +  +          S     +SA 
Sbjct: 321 TQQQIRYPVVVLLEGVVDT---GNLGSIIRSAYYLGVDAIVFAGRHSAPLSPVTIKASAG 377

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKS------------VLAPKEAAIVL 111
           A    +++     L +   ++ FI     R++ N                L P       
Sbjct: 378 AA---ENM----TLLDVQNEVDFI----KRSQANGWRFYAADVPKTGATYLEPGALQPPG 426

Query: 112 NERIFSGQNVG--------IIFGRERWGLTNEEIALSNAIISFPVNPLFP---------- 153
           +     G            I+ G E  GL+N     +++I+S P   L P          
Sbjct: 427 SAVANEGHPDALIGQSPSVIMMGYEGSGLSNHIKGRADSIVSIPGARLLPGVGAASDPAR 486

Query: 154 --SLNISQAVLLM 164
             SLN+S A  L+
Sbjct: 487 VDSLNVSVAAALL 499


>gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
 gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
          Length = 263

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 13/149 (8%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIAD 83
             N+G V R      L+ + L        + K   +S  A  V  +      +L  A++ 
Sbjct: 127 PGNLGAVLRTAEALGLSGVLLSAGCADIYAPKVVRASMGA--VFRTAFFQTEDLPAALSL 184

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
           L        R +              +L +    G  V    G E  GL++  +   +  
Sbjct: 185 L--------REKGLQTLAALAGGTTRLLTQLDLRGGVVA-AIGNEGAGLSDACVDACDPF 235

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + P+     SLN + A  +++WE M + 
Sbjct: 236 -TIPMKGRAESLNAAAAAAIILWEIMRSR 263


>gi|195440808|ref|XP_002068232.1| GK13008 [Drosophila willistoni]
 gi|194164317|gb|EDW79218.1| GK13008 [Drosophila willistoni]
          Length = 409

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 58/183 (31%), Gaps = 24/183 (13%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
                 +S+    ++  + +   N+G + R        Q+ +++        KA      
Sbjct: 230 AKTTPTSSSLPITVVCDNIREPNNLGSIIRTCAALPCHQVVVIHGSCDPWESKALRGGCG 289

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER--------- 114
               +    +  ++  A  DL            +   V   +     L E          
Sbjct: 290 GQFRLP---IRDDI--AWDDLALTI---PPETADNCHVYIAENNLEKLAEHTAIEYADMP 341

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNA-------IISFPVNPLFPSLNISQAVLLMVWE 167
                +  +I G E  G+++E  +  N         +  P+     SLN++ A+ L+++E
Sbjct: 342 AAPNGHQILIIGGESHGVSSEAYSFMNLVGQNKGKCVYIPLAEGTDSLNVASALTLLLFE 401

Query: 168 CME 170
              
Sbjct: 402 LRR 404


>gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2]
 gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2]
          Length = 262

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 61/166 (36%), Gaps = 12/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L       V++L   Q   N+G + R+        + L +      + K   S+  +  
Sbjct: 108 ALLEQPDALVMVLDGVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLF 167

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +    +  +L+E +           + ++    +L+    A +    I    +  ++ G
Sbjct: 168 HLP--VIEGSLEELL----------PQAKSKGARLLSTSLDASLSCYTIDLRVSTWLVIG 215

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G++    ++ +  +  P+     SLN + A  ++++E M   
Sbjct: 216 NEGQGISAATASMVDESVFIPMQGQAESLNAAMASTVLLFEAMRQR 261


>gi|220678250|emb|CAX14273.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
           protein 1 (TARBP1) [Danio rerio]
          Length = 580

 Score = 43.5 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    F    L L +       ++ ++ S +++  +  + V     E ++D 
Sbjct: 436 PTNLGGLCRTCEIFGAKALVL-DSLRHVNDKQFQALSVSSELWLPMMEVKP--AE-LSDF 491

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             +     +    +  +   + +     +     +   ++ G ER G+    + L +  +
Sbjct: 492 LQL-----KKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCV 546

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171
             P   +  SLN+  +  L+VWE    
Sbjct: 547 EIPQFGVTRSLNVHVSAALLVWEYTRQ 573


>gi|255079034|ref|XP_002503097.1| predicted protein [Micromonas sp. RCC299]
 gi|226518363|gb|ACO64355.1| predicted protein [Micromonas sp. RCC299]
          Length = 204

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 14/142 (9%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G +AR    F +  + L+     + +   + SS + D V      +  L +A   L 
Sbjct: 11  HNVGTIARCATAFGVRSVVLIG-AKSYNTFGCKGSSNHVDFV-----HYPTLSDARVGLM 64

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                T          +   + A+ +    F+ QN   I G E  GLT ++ A+ +  + 
Sbjct: 65  ERMGVTKILG------VEICDGAVPIETHPFA-QNTAFIAGNEGDGLTKQQKAICDGFVY 117

Query: 146 FPVNP-LFPSLNISQAVLLMVW 166
              +     SLN++ A  L++ 
Sbjct: 118 IRQHGVGTASLNVAVASALVMH 139


>gi|319941637|ref|ZP_08015961.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804867|gb|EFW01721.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis
           3_1_45B]
          Length = 274

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 26/61 (42%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   +  + G E  GL+ + + L++     P++    SLN+  A  + +++     +   
Sbjct: 214 AAGPICWLMGAEGPGLSVKALELADERYWIPISRSVESLNVGAAAAVCLFDAARRRLAHR 273

Query: 177 E 177
            
Sbjct: 274 H 274


>gi|163787545|ref|ZP_02181992.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159877433|gb|EDP71490.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 245

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 22/176 (12%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            P L  +  G +I L   +   N+G + R    + +  L          + K   ++  +
Sbjct: 88  KPTLPENV-GLIIALDAIRDPGNLGTIIRLCDWYGVKDLVCSTNTVDCYNSKVVQATMGS 146

Query: 65  DCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              +  V V + +L+  +              +    V         +       + V I
Sbjct: 147 ---LTRVNVNYLDLESYLE-------------STKVDVFGAFMNGENIYATNLPNEGV-I 189

Query: 124 IFGRERWGLTNEEIALSNAIISFPV---NPLFPSLNISQAVLLMVWECMENSIVSS 176
           I G E  G++    +  +  I+ P    N    SLN++ A  +++ E    +I   
Sbjct: 190 ILGNEANGISEIIASKVDRQITIPQFGENKSTESLNVANATAIILSEFSRRTITEK 245


>gi|322391338|ref|ZP_08064808.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
 gi|321145764|gb|EFX41155.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
          Length = 179

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNL-KE 79
           Q   N+G + R     + T   +V+ +  D +  +  RS   +   V           +E
Sbjct: 44  QDPGNVGTMIRTADAADFTG-VIVSSKSADIYSLKTLRSMQGSHFHVPIYRMPVETFVEE 102

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A      I ATT    +        +E A +        +N  ++ G E  G++   +  
Sbjct: 103 AKKGNLPILATTLSQESK-----DYRELARL--------ENFALVMGNEGQGISPFMVEQ 149

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ ++   +     SLN++ A  ++++
Sbjct: 150 ADQLVHISMKGQAESLNVAVAAGILMF 176


>gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
 gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L ++      P +     ++        + +       I 
Sbjct: 114 QDPGNLGTLIRTADAAGI-DLIVMEKGTADPYQDKVMRASQGSIF--HIPIV------IK 164

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L     TT  N  +        E A+   E I +     ++ G E  G+  E +  +  
Sbjct: 165 GL-----TTYINEFDGPVYGTALEDAVSFKE-IEAQSRFALLLGNEGEGVNQELLQQTTQ 218

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
            +  P+     SLN++ A  +++++ 
Sbjct: 219 NLIIPIYGKAESLNVAIAGSILLYQL 244


>gi|224532773|ref|ZP_03673390.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           WI91-23]
 gi|224512391|gb|EEF82775.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           WI91-23]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNIN 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N    + +  F              +         +N+   + + + +I G E  G+   
Sbjct: 160 NTINLLKNYGF-------------WIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               S+ +I  P +    SLN+S +  ++++E    
Sbjct: 207 IKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|195941652|ref|ZP_03087034.1| rRNA methylase [Borrelia burgdorferi 80a]
 gi|312149360|gb|ADQ29431.1| RNA methyltransferase, TrmH family [Borrelia burgdorferi N40]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNIN 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N    + +  F              +         +N+   + + + +I G E  G+   
Sbjct: 160 NTINLLKNYGF-------------WIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               S+ +I  P +    SLN+S +  ++++E    
Sbjct: 207 IKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|221218099|ref|ZP_03589565.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           72a]
 gi|221192047|gb|EEE18268.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           72a]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNIN 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N    + +  F              +         +N+   + + + +I G E  G+   
Sbjct: 160 NTINLLKNYGF-------------WIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               S+ +I  P +    SLN+S +  ++++E    
Sbjct: 207 IKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|225549662|ref|ZP_03770628.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           118a]
 gi|225369939|gb|EEG99386.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           118a]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNIN 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N    + +  F              +         +N+   + + + +I G E  G+   
Sbjct: 160 NTINLLKNYGF-------------WIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               S+ +I  P +    SLN+S +  ++++E    
Sbjct: 207 IKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|216264577|ref|ZP_03436569.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           156a]
 gi|223888839|ref|ZP_03623430.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           64b]
 gi|224533577|ref|ZP_03674166.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           CA-11.2a]
 gi|225548612|ref|ZP_03769659.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           94a]
 gi|226320997|ref|ZP_03796542.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           29805]
 gi|215981050|gb|EEC21857.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           156a]
 gi|223885655|gb|EEF56754.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           64b]
 gi|224513250|gb|EEF83612.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           CA-11.2a]
 gi|225370642|gb|EEH00078.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           94a]
 gi|226233598|gb|EEH32334.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           29805]
 gi|312148435|gb|ADQ31094.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           JD1]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNIN 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N    + +  F              +         +N+   + + + +I G E  G+   
Sbjct: 160 NTINLLKNYGF-------------WIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               S+ +I  P +    SLN+S +  ++++E    
Sbjct: 207 IKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|15594861|ref|NP_212650.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
 gi|3915369|sp|O51468|Y516_BORBU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BB_0516
 gi|2688440|gb|AAC66889.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 83  LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNIN 141

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N    + +  F              +         +N+   + + + +I G E  G+   
Sbjct: 142 NTINLLKNYGF-------------WIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKL 188

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               S+ +I  P +    SLN+S +  ++++E    
Sbjct: 189 IKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 224


>gi|320158924|ref|YP_004191302.1| RRNA methylase [Vibrio vulnificus MO6-24/O]
 gi|319934236|gb|ADV89099.1| RRNA methylase, putative [Vibrio vulnificus MO6-24/O]
          Length = 150

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 91  TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP 150
           TA    + + V                 +    +FG E   L  E +  ++ ++  P + 
Sbjct: 45  TASLDGDVEIVCVELVVGATALPHFVHPEKAIYLFGPEDGSLPQEVVDKAHHVVYIPTHG 104

Query: 151 LFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
               +N++  V +++++ +   + S + + +
Sbjct: 105 C---MNLAATVNVVMYDRLAKKLDSIDDHAQ 132


>gi|299134646|ref|ZP_07027838.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2]
 gi|298590456|gb|EFI50659.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2]
          Length = 158

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 56/169 (33%), Gaps = 35/169 (20%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P + +N G + R      + +  ++ P     S++    +      +D V +  
Sbjct: 2   RIALYQPDIPQNTGTILRLCACLAV-EAHIIEPAGFPVSDRHFRRA--GMDYLDQVSI-- 56

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG------------I 123
                             +R+   +     + A      + + +               +
Sbjct: 57  ------------------SRHVSWTAFRAWQQADGGRLLLLTTKGATSYLAHRYEDTDIL 98

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + GRE  G+ +E  A ++  +  P+     SLN++    + + E +  +
Sbjct: 99  LLGRESAGVPDEVAASADERLVIPIAEGMRSLNVAVTAAMALGEALRQT 147


>gi|254786479|ref|YP_003073908.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
 gi|237686026|gb|ACR13290.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
          Length = 258

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIAD 83
            +N+GM+ R++     T L L  PR G     A    A+A  +  +  +    L   +  
Sbjct: 122 PQNLGMIIRSVCASPATALIL--PRKGCAKLDALVIKASAGTLFKAPVIRCDTLMSCLQA 179

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                A           V+     A    E   S      + G E  G++ +   L +  
Sbjct: 180 FKTKGAC----------VVGLALDAKTSLENESSAGTRIYVLGNETDGISPDVSRLCDEQ 229

Query: 144 ISFPVNPLFPSLNISQAVLLMVW 166
           +  P+     SLN++    L+ +
Sbjct: 230 LKIPMRNGVESLNVAVTASLIAF 252


>gi|293415850|ref|ZP_06658493.1| methyltransferase [Escherichia coli B185]
 gi|291433498|gb|EFF06477.1| methyltransferase [Escherichia coli B185]
          Length = 345

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F++    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFDVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++      K +            +      + ++ G+E  GL +     
Sbjct: 265 FRQAGYTVVTTSS---EQGKPLF-----------KTSLPAKMVLVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLSEWWRQ 342


>gi|239908534|ref|YP_002955276.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           magneticus RS-1]
 gi|239798401|dbj|BAH77390.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           magneticus RS-1]
          Length = 237

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCV 67
           ++    +++L   Q   N+G + R ++        LV P+         A  +SA     
Sbjct: 80  DAPLQVILVLDRVQDPGNVGALVRTLYALGGGG-ILV-PKHEGARLGPGAAKASAGTLAR 137

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   +V +NL +A+          A     +  + A  E              + ++ G 
Sbjct: 138 LPLAKV-TNLSQALD---------AAKEAGYTVIGAAGEEEAQNVHLAKPPFPLALVLGS 187

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           E  G+        +A+   P      SLN++QA  +M
Sbjct: 188 EEEGIRPGIRKRCDALWRIPQARPIDSLNVAQAGAIM 224


>gi|169614449|ref|XP_001800641.1| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
 gi|160707352|gb|EAT82702.2| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
          Length = 1320

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 63/186 (33%), Gaps = 33/186 (17%)

Query: 4    YAPQLQNSAKGPVIILVDP--QLGENIGMVARAMWNFNLTQLRL---------------V 46
              P  + + +   +ILV    +   N+G ++R   +F L  L +               V
Sbjct: 1147 AGPPSEQNQRPASVILVASLIENCTNVGGLSRVAESFGLEALYIGDLRQTAHKDFKATSV 1206

Query: 47   NPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKE 106
                 +P  + +  +      + +++              +       + +  S+L  ++
Sbjct: 1207 TSEKHFPIHELK--AGGVPDFLIAMKR--------NGYVAV----GIEQTDQSSILGTED 1252

Query: 107  AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                    +   +   ++ G E+ G+T E +A  +  +      +  SLN+  A  + ++
Sbjct: 1253 TGNASLGILP--RKCVLVLGSEKGGITAEVLAALDRCVEIRTVGVTRSLNVQTAGGIALY 1310

Query: 167  ECMENS 172
            E     
Sbjct: 1311 EWWRKW 1316


>gi|303257674|ref|ZP_07343686.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
           bacterium 1_1_47]
 gi|331000773|ref|ZP_08324422.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859644|gb|EFL82723.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
           bacterium 1_1_47]
 gi|329570505|gb|EGG52230.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
           excrementihominis YIT 11859]
          Length = 247

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           G + G E  GL        + +   P+     SLN+S A  + ++E +    V 
Sbjct: 194 GWVLGAEGDGLRQLTRRRCSDLAKIPMLGTVESLNVSVAAGICLFETVRQRTVG 247


>gi|154338423|ref|XP_001565436.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062485|emb|CAM42347.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 517

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P      + A   +++LV  ++  N+G + RA  +     + LVN     P+++    ++
Sbjct: 269 PLDNAFSHRALEAMLVLVGLRIPSNVGALLRAAADMGYDAVVLVN--CADPTQEKVLRAS 326

Query: 63  NADCVIDSVRVFSN 76
           +   +  ++R++  
Sbjct: 327 DGTALSPALRIYET 340


>gi|16803258|ref|NP_464743.1| hypothetical protein lmo1218 [Listeria monocytogenes EGD-e]
 gi|46907437|ref|YP_013826.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092017|ref|ZP_00229811.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
           H7858]
 gi|47095060|ref|ZP_00232673.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964716|ref|YP_002350394.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
 gi|224499109|ref|ZP_03667458.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
           Finland 1988]
 gi|224502486|ref|ZP_03670793.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
           FSL R2-561]
 gi|226223818|ref|YP_002757925.1| rRNA methylase [Listeria monocytogenes Clip81459]
 gi|254823528|ref|ZP_05228529.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254852912|ref|ZP_05242260.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254898621|ref|ZP_05258545.1| rRNA methylase [Listeria monocytogenes J0161]
 gi|254911890|ref|ZP_05261902.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932904|ref|ZP_05266263.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254936215|ref|ZP_05267912.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|254991828|ref|ZP_05274018.1| rRNA methylase [Listeria monocytogenes FSL J2-064]
 gi|255522191|ref|ZP_05389428.1| rRNA methylase [Listeria monocytogenes FSL J1-175]
 gi|284801538|ref|YP_003413403.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
 gi|284994680|ref|YP_003416448.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
 gi|300764367|ref|ZP_07074361.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|16410634|emb|CAC99296.1| lmo1218 [Listeria monocytogenes EGD-e]
 gi|46880705|gb|AAT04003.1| RNA methyltransferase, TrmH family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47016678|gb|EAL07598.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           1/2a F6854]
 gi|47019733|gb|EAL10472.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
           H7858]
 gi|217333986|gb|ACK39780.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
 gi|225876280|emb|CAS04989.1| Putative rRNA methylase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606248|gb|EEW18856.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|258608805|gb|EEW21413.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|284057100|gb|ADB68041.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
 gi|284060147|gb|ADB71086.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
 gi|293584458|gb|EFF96490.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293589848|gb|EFF98182.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293592748|gb|EFG00509.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|300515019|gb|EFK42072.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|307570723|emb|CAR83902.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes L99]
 gi|313609196|gb|EFR84870.1| RNA methyltransferase [Listeria monocytogenes FSL F2-208]
 gi|328466614|gb|EGF37749.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 1816]
 gi|332311603|gb|EGJ24698.1| RNA methyltransferase [Listeria monocytogenes str. Scott A]
          Length = 252

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQADLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   + A  LN+       + ++ G E  G+
Sbjct: 171 WIANLEE--EGVPVIGA-----------VLD--DQAKSLNDMTKRD-TLALMVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E     +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 257

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 20/151 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L +      S K   S+  +   I  ++    L E I 
Sbjct: 122 QDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPILKRP--LDEFID 179

Query: 83  DL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +L      IY T   N   ++SV  P+E             +  +I G E  G+    + 
Sbjct: 180 ELKSQGVAIYGTALENGAVYQSV-KPEE-------------SFALIVGNEGAGVDAGLLQ 225

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            ++  +  P+     SLN++ A  ++V+   
Sbjct: 226 KTDLNLYVPLYGQAESLNVAVAAAILVYHLR 256


>gi|222149356|ref|YP_002550313.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
 gi|221736340|gb|ACM37303.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
          Length = 161

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVR 72
            I L  P +  N G + R      L  + ++ P     S++    +     A   +    
Sbjct: 14  RIALYQPDIPGNTGTILRLAACLGLG-VDIIEPAGFDLSDRNLKRAGMDYLAAVTLTRHV 72

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            ++  ++               +N+ + ++     A +    +    +  ++FGRE  G+
Sbjct: 73  NWAQFED-------------WRKNSGRRLVLASTKAAMPYTELAFQPDDILLFGRESAGV 119

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +     ++A I  P+     S+N++ +  ++  E +  +
Sbjct: 120 PDHVHDGADARILIPMVEGQRSINVAMSAAMIAGEALRQT 159


>gi|313678173|ref|YP_004055913.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
 gi|312950453|gb|ADR25048.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
          Length = 233

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---DCVIDSVR 72
           V+IL   Q   N G + R      +  + +   R    +      S+       +I    
Sbjct: 86  VLILDHIQDPHNFGAILRTANAAGIKHIIIPKDRSTDVTSTVLKVSSGGFVGVKIIKVSN 145

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + +++ +                  F    +  +   V   ++   ++  ++ G E  G+
Sbjct: 146 IVASINKL-------------KSWGFWIYSSLLDQNAVPYNKVEYNEHCALVVGNEEKGI 192

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +   I  ++  +  P      S+N+S A  ++++E 
Sbjct: 193 SKPIINTTDVKVYIPQFGTVQSMNVSVATGILLFEL 228


>gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208]
          Length = 248

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 20/151 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L +      S K   S+  +   I  ++    L E I 
Sbjct: 113 QDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPILKRP--LDEFID 170

Query: 83  DL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +L      IY T   N   ++SV  P+E             +  +I G E  G+    + 
Sbjct: 171 ELKSQGVAIYGTALENGAVYQSV-KPEE-------------SFALIVGNEGAGVDAGLLQ 216

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            ++  +  P+     SLN++ A  ++V+   
Sbjct: 217 KTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|304569674|ref|YP_009267.2| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232387|gb|ADP85241.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           RCH1]
          Length = 383

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              ++ G E  G+        + ++  P+   F S N++QA  L++
Sbjct: 327 PCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 372


>gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           SK135]
 gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           SK135]
 gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU144]
 gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU045]
 gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU028]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      L  L ++      P +     ++    +     +F ++   I 
Sbjct: 114 QDPGNLGTLIRTADAAGL-DLIVMEKGTADPFQDKVIRASQGS-IFHIPVIFDDINNYIH 171

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  +Y T               E A+  N+ I +  N  +I G E  G+ ++ +  + 
Sbjct: 172 QFNGPVYGTA-------------LENAVSFND-IEAQANFALILGNEGEGVNSDLLKETT 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             ++ P+     SLN++ A  +++++ 
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244


>gi|189424926|ref|YP_001952103.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
 gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 17/158 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           +L   Q  +N+G + R+     +  + +   R    +     +SA A   I  ++V    
Sbjct: 100 VLDRIQDPQNLGALIRSAACAGVQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLV 159

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+       +I+                   A     +     N+ ++ G E  G+  
Sbjct: 160 QTLERLKQAGCWIFGLAG--------------EANKDIYQADYRGNLALVVGSEGEGIRP 205

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 + +++ P      SLN S A  ++++E     
Sbjct: 206 LVRKHCDLLLAIPHYGGISSLNASVAGGIVLFEAARQR 243


>gi|220678249|emb|CAX14272.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
           protein 1 (TARBP1) [Danio rerio]
          Length = 191

 Score = 43.5 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    F    L L +       ++ ++ S +++  +  + V     E ++D 
Sbjct: 47  PTNLGGLCRTCEIFGAKALVL-DSLRHVNDKQFQALSVSSELWLPMMEVKP--AE-LSDF 102

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             +     +    +  +   + +     +     +   ++ G ER G+    + L +  +
Sbjct: 103 LQL-----KKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCV 157

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171
             P   +  SLN+  +  L+VWE    
Sbjct: 158 EIPQFGVTRSLNVHVSAALLVWEYTRQ 184


>gi|212534794|ref|XP_002147553.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
           18224]
 gi|210069952|gb|EEA24042.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
           18224]
          Length = 506

 Score = 43.5 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 73/222 (32%), Gaps = 46/222 (20%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++  S    VI+L       N+G V R+ +   +  L L        +     +SA A 
Sbjct: 288 EEVAKSRYPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPLTPVTIKASAGAA 347

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL---APKEAAIVLN---------- 112
              +++ +      A  ++ FI     R+R N        +P+  A +            
Sbjct: 348 ---ENMTILK----ANNEVDFI----RRSRENGWRFYAADSPENVADLAATHGTLADDTT 396

Query: 113 ----------ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP--------- 153
                       + +     ++ G E  GL     A ++  +S P   + P         
Sbjct: 397 SIASNNTNQSANLLTTAPTVLMLGNEGTGLLPRIKAQADGFVSIPGARIRPDMGINDAAR 456

Query: 154 --SLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELL 193
             SLN+S A  L++ E +    +     V   +  +TK    
Sbjct: 457 VDSLNVSVAAALLM-EMLMRVPLRVASAVPVTSAGSTKATTE 497


>gi|70726825|ref|YP_253739.1| hypothetical protein SH1824 [Staphylococcus haemolyticus JCSC1435]
 gi|68447549|dbj|BAE05133.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L ++      P +     ++    V     + ++LK  IA
Sbjct: 114 QDPGNLGTLIRTSDAAGI-DLIVMEKGTADPYQDKVLRASQGS-VFHIPVITADLKTFIA 171

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  +Y T   N   +K V               S     ++ G E  G+    +  ++
Sbjct: 172 GFNGPVYGTALENAQPYKEV--------------ASQDIFALLLGNEGEGVNKALLNETS 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             ++ P+     SLN++ A  ++++  
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILLYHL 244


>gi|304436951|ref|ZP_07396914.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369902|gb|EFM23564.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 276

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 15/152 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+GM+ R         + L+       S K   ++  +   +  +    + +E + 
Sbjct: 133 QDPGNVGMILRTADAAGAAGVILLRGCADVYSSKVVRATMGSLFYVPFISGVDD-EELL- 190

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--QNVGIIFGRERWGLTNEEIALS 140
                     R        L              +   +   ++ G E  G++   +   
Sbjct: 191 ----------RFAQEQSLYLYAAACDADAVTHFAADLCRPTIVVLGNEANGVSERLLGAC 240

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +  P+     SLN++ A   +++E M   
Sbjct: 241 Q-HLYVPMCGQAESLNVASAATAILYESMRQR 271


>gi|120603957|ref|YP_968357.1| RNA methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120564186|gb|ABM29930.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           DP4]
          Length = 274

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              ++ G E  G+        + ++  P+   F S N++QA  L++
Sbjct: 218 PCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 263


>gi|46447870|gb|AAS94526.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 249

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              ++ G E  G+        + ++  P+   F S N++QA  L++
Sbjct: 193 PCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238


>gi|328541799|ref|YP_004301908.1| TRNA/rRNA methyltransferase (SpoU) [polymorphum gilvum SL003B-26A1]
 gi|326411551|gb|ADZ68614.1| TRNA/rRNA methyltransferase (SpoU) [Polymorphum gilvum SL003B-26A1]
          Length = 181

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               + G ER  L+   +A  + ++  P    F   N++ A  +++++        +E+ 
Sbjct: 96  RAAYVLGPERGSLSPAMLARCDHVVKIPT--RFCI-NVATAGAIVLYDRHRALGRYAERP 152

Query: 180 VKEQNTPATK 189
           +      A +
Sbjct: 153 LTAGGPKAER 162


>gi|145230059|ref|XP_001389338.1| RNA methyltransferase, TrmH family [Aspergillus niger CBS 513.88]
 gi|134055453|emb|CAK43968.1| unnamed protein product [Aspergillus niger]
          Length = 497

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 39/176 (22%)

Query: 15  PVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           PV+IL    VDP    N+G + R+ +      +          S     +SA A  ++  
Sbjct: 315 PVVILLDGIVDP---GNLGAIIRSAYYLGADAIVFAGRNSAEISPVVLKASAGAAELM-- 369

Query: 71  VRVFSNLKEAIADLHFI----------YATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                 L     ++ FI          YA  A  + +  + + P E     N    +   
Sbjct: 370 -----TLLHVRNEVDFIRRSKDNGWRFYAADAPGKGSTSTYIDPAEFG---NGAPVAQAP 421

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPV---NPLFP---------SLNISQAVLLM 164
             I+ G E  GL+   ++ ++A+I  P    +P            SLN+S A  L+
Sbjct: 422 SVIMMGSEGTGLSPHILSQADAVIGIPGAKFSPELGAESDPARVDSLNVSVAAALL 477


>gi|331265656|ref|YP_004325286.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
 gi|326682328|emb|CBY99945.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 23/150 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV------IDSVRVFSN 76
           Q   N+G + R       T   +V+ +           S            +        
Sbjct: 111 QDPGNVGTMIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRLPLASFV-- 167

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +EA      I ATT    +     L+P E             N  ++ G E  G+++  
Sbjct: 168 -EEAKKSYLPILATTLSRESKDYRELSPLE-------------NFALVMGNEGQGISSVM 213

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              ++ ++   +     SLN++ A  ++++
Sbjct: 214 AESADQLVHISMKGRAESLNVAVAAGILMF 243


>gi|149923142|ref|ZP_01911556.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
 gi|149815980|gb|EDM75495.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
          Length = 213

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 30/156 (19%)

Query: 27  NIGMVARAMWNFNLTQLRLVN--PRDGWP--------SEKARSSSANADCVIDSVRVFSN 76
           N+G + R      +  + L    P    P        +E + + S +AD    +  +   
Sbjct: 71  NVGSMFRTADGAGVKAMHLCGFTPTPEHPKMAKTSLGAEASVAWSHHADGAAAAAALVE- 129

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN---VGIIFGRERWGLT 133
                           + R  +     P+   +    R+  G +   + ++ G E  G+ 
Sbjct: 130 ----------------QGRRLWALEGGPRAEDLFDLARVSGGPSDPAIVLVLGHEVSGVD 173

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
              +A    +   P+  +  SLN+S A  +  +   
Sbjct: 174 PRILAHCERVARIPMAGIKGSLNVSVAFAVAAYLLR 209


>gi|191638665|ref|YP_001987831.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227534828|ref|ZP_03964877.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239632038|ref|ZP_04675069.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066720|ref|YP_003788743.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|190712967|emb|CAQ66973.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227187584|gb|EEI67651.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239526503|gb|EEQ65504.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439127|gb|ADK18893.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|327382706|gb|AEA54182.1| RNA methyltransferase, TrmH family [Lactobacillus casei LC2W]
 gi|327385893|gb|AEA57367.1| RNA methyltransferase, TrmH family [Lactobacillus casei BD-II]
          Length = 253

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 13/169 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   A QL     G  ++L   Q   N+G + R      +  +   N        K   +
Sbjct: 94  MPRRAEQLPEPLSGQFLLLDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRA 153

Query: 61  SANADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +      VR+ S  L   I  LH         R       +           I   +
Sbjct: 154 MQGSQF---HVRIVSAKLMPIIKALH---------RGGIPVYGSELNEKAKSYHSIQPSE 201

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +I G E  G+    +  ++  +  P+     SLN++ A  +M++  
Sbjct: 202 RFALIVGNEGNGMDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMFHL 250


>gi|302037012|ref|YP_003797334.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira
           defluvii]
 gi|300605076|emb|CBK41409.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira
           defluvii]
          Length = 272

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 19/141 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFS--NLKE 79
           Q   N+G + R     +++ L L  P      + K   ++A A   +    +F   +L+E
Sbjct: 128 QDPTNMGTIIRTAAGLDVSALWL-APHSVDVFNPKVVRATAGALFQLP---IFPHTSLEE 183

Query: 80  AIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
               D   I A    +      + A +                 +  G E  GL+   + 
Sbjct: 184 LQNLDCVIIAADAGTSEGCV-PIRAIRSIPA----------RTVLAIGSESRGLSEPVLD 232

Query: 139 LSNAIISFPVNPLFPSLNISQ 159
            +    + P+ P   SLN + 
Sbjct: 233 AATVRCTIPLKPGVESLNAAA 253


>gi|294786700|ref|ZP_06751954.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315226315|ref|ZP_07868103.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294485533|gb|EFG33167.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315120447|gb|EFT83579.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 247

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 21/159 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R    F   ++ ++ P     + K    +     +  ++    ++ E +AD+  
Sbjct: 94  NIGSMVRTANAFTAKRVHIIGPHKW--NRKGSLMT----ELYQTIDYHPSIDEFVADIRA 147

Query: 87  --------IYATTARNRNNFKSVLAPKEAAIVLNERIFS------GQNVGIIFGRERWGL 132
                     A   +  N  + +   +  A+ +             +   ++FG E  GL
Sbjct: 148 RDRKESQEAAAKEGKEGNKAQPIHT-RIVALDIVPGAVPIETYRFPERCVLLFGAEGPGL 206

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           T + + +++ ++         SLN   A  + +   M  
Sbjct: 207 TRKALGIADDVVYITQYGSVRSLNAGAAAAVSMHAWMMQ 245


>gi|292620337|ref|XP_002664256.1| PREDICTED: probable methyltransferase TARBP1-like [Danio rerio]
          Length = 241

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    F    L L +       ++ ++ S +++  +  + V     E ++D 
Sbjct: 97  PTNLGGLCRTCEIFGAKALVL-DSLRHVNDKQFQALSVSSELWLPMMEVKP--AE-LSDF 152

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
             +     +    +  +   + +     +     +   ++ G ER G+    + L +  +
Sbjct: 153 LQL-----KKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCV 207

Query: 145 SFPVNPLFPSLNISQAVLLMVWECMEN 171
             P   +  SLN+  +  L+VWE    
Sbjct: 208 EIPQFGVTRSLNVHVSAALLVWEYTRQ 234


>gi|325294892|ref|YP_004281406.1| hypothetical protein Dester_0700 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065340|gb|ADY73347.1| Protein of unknown function DUF2168 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 182

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 27/154 (17%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSS----ANADCV-------IDSVRVFSNLKE 79
           +ARA   + + +  +V P +       +  S     +           +  V+     + 
Sbjct: 32  IARASRTYGIKKYFIVQPIENHLWLANKLLSFWQGGHGREYNPKRWEALKLVKAVPYFEN 91

Query: 80  AIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + ++         +  T+AR   N  S          L +RI SG+NV I FG   WGL
Sbjct: 92  VLEEIEKENGVKPKVVVTSAREYENSISF-------ECLRDRIRSGENVIICFGT-GWGL 143

Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
           T E I  ++ I+        +  L++  A  +++
Sbjct: 144 TEEFIKSADYILEPIRGATDYNHLSVRSAAAIIL 177


>gi|307709738|ref|ZP_07646189.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307619440|gb|EFN98565.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 246

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 17/149 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKE 79
           Q   N+G + R       T   +V+ +           S         +   S+   L+E
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQRLLEE 169

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A      + ATT       K  +  +E   +        +N  ++ G E  G++      
Sbjct: 170 AKKASIPVLATT-----LSKDSVDYRELPSI--------ENFVLVMGNEGQGISPLMAES 216

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++ ++   +     SLN++ A  ++++  
Sbjct: 217 ADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|119936308|gb|ABM06104.1| hypothetical protein LOC79922 [Bos taurus]
          Length = 178

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 25/165 (15%)

Query: 47  NPRDGWPSEKARSSSANADCVIDSVRVFSN-----LKEAIADLHFIYATTARNRNNFKSV 101
            P     +     +SA A  V+D   VFS        +A A   ++ A           +
Sbjct: 3   KPCSCPLTPVVSKASAGAMEVMD---VFSTDDLAGFLQARARQGWLVA--GTVGCPGPEI 57

Query: 102 LAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF-PVN---PLFPSLNI 157
               +  +         +   ++ G E  GL+    A    +++  P     P   SLN+
Sbjct: 58  ALSSKIPVTRCLDFLWDRPTLLVLGNEGSGLSRAVQASCQLLLTILPGRQLPPGLESLNV 117

Query: 158 SQAVLLMVW-----------ECMENSIVSSEKNVKEQNTPATKGE 191
           S A  +++            E     ++   ++    +  A   +
Sbjct: 118 SVAAGILLHSICSQRKGFPVERRREQLLHDPQDPSASSEAARVAQ 162


>gi|148377309|ref|YP_001256185.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291355|emb|CAL58738.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 233

 Score = 43.5 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           V+IL       N G + R      +  + +   R    +      S+        V++  
Sbjct: 86  VLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDRSTDVTSTVLKVSSGGFV---GVKIIK 142

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            SN+  +I  L          +  F    +  +   V   ++    N  ++ G E  G++
Sbjct: 143 VSNIASSIEKL---------KKWGFWIYSSLLDENAVPYNKVQYAGNCALVVGNEEKGIS 193

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +  ++  +  P      S+N+S A  ++++E +  S
Sbjct: 194 KPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNRS 232


>gi|77362425|ref|YP_341999.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877336|emb|CAI89553.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 170

 Score = 43.5 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 26/155 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           VI L++P+   N+G V RA                G    +    + N    +++ +  +
Sbjct: 7   VIGLLNPKSPTNVGGVLRA---------------AGCYDAQQVFFTGN--RYLNAQKFHT 49

Query: 76  NLKEAIADLHFIYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           + K  +  +    AT      + +     V+   E A  L E     +N   +FG E   
Sbjct: 50  DTKNVVERISLT-ATDNLEKVKPQGATVVVIELIEGATPLPEFTHP-ENAFYVFGPEDGS 107

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ + +  ++ ++  P       +N++    ++++
Sbjct: 108 VSKDVLKWADEVVYIPT---IGCMNLAATCNVVLY 139


>gi|116495156|ref|YP_806890.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|116105306|gb|ABJ70448.1| rRNA methylase [Lactobacillus casei ATCC 334]
          Length = 253

 Score = 43.1 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 13/169 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   A QL     G  ++L   Q   N+G + R      +  +   N        K   +
Sbjct: 94  MPRRAEQLPEPLSGQFLLLDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRA 153

Query: 61  SANADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
              +      VR+ S  L   I  LH         R       +           I   +
Sbjct: 154 MQGSQF---HVRIVSAKLMPIIKALH---------RGGIPVYGSELNEKAKSYHSIQPSE 201

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +I G E  G+    +  ++  +  P+     SLN++ A  +M++  
Sbjct: 202 RFALIVGNEGNGMDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMFHL 250


>gi|70950868|ref|XP_744721.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524790|emb|CAH77939.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 233

 Score = 43.1 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 28/147 (19%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---LKEAIAD 83
           NIG + R+   FN++++ +V  R+   +    S   +       +R F+N   LK+ + +
Sbjct: 39  NIGNIVRSCVAFNVSEIFVVG-RNKKETSFFGSMGTHGYI---KIRYFTNMIELKQYLNN 94

Query: 84  LH-FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               +YA    N++              + E+ F  +++  +FG E  G++ + I + + 
Sbjct: 95  NDILLYACEITNQSIP------------ITEQPF-NKDIAFLFGNEGTGISEQIINMCDK 141

Query: 143 IISFPVNPLFP----SLNISQAVLLMV 165
           II  P    +     SLN+S +  +++
Sbjct: 142 IIYIP---QYGNGTASLNVSVSCAIIL 165


>gi|298206902|ref|YP_003715081.1| hypothetical protein CA2559_01575 [Croceibacter atlanticus
           HTCC2559]
 gi|83849536|gb|EAP87404.1| hypothetical protein CA2559_01575 [Croceibacter atlanticus
           HTCC2559]
          Length = 153

 Score = 43.1 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E AI L E     +    + G E  GLT E I  S+ +I F     F SLN++ A  +++
Sbjct: 88  ETAIQL-EDFEHPRRCVYLLGAEDHGLTREAIDRSHFLIQFKS--EF-SLNVAVAGSIVL 143

Query: 166 W 166
           +
Sbjct: 144 Y 144


>gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
 gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
          Length = 261

 Score = 43.1 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 19/146 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      L  + L        S K   S   ++  +    + ++L   ++
Sbjct: 121 QDPGNVGTMIRTADAAGLAGVILGEGTADIYSTKTLRSMQGSNYHL--SILHASLPAVLS 178

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   ++ T    R+             V   ++      G++ G E  G+    + 
Sbjct: 179 QFQEKEIPVFGTEVTQRS-------------VAYTQVKVPHTYGLMVGNEGQGINQSLLT 225

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLM 164
             + +I  P+     SLN++ A  ++
Sbjct: 226 QVDQVIHIPMKGASESLNVAVAAGIL 251


>gi|297155855|gb|ADI05567.1| putative rRNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 272

 Score = 43.1 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R    L+     L 
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----LETWPRGLE 186

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERI-FSGQNVGIIFGRERWGLTNEEIALSNAII 144
            +     R+       L P E A  +++      + V ++ G E  GL+ + +  ++  +
Sbjct: 187 AV-----RHTGFKILALTPDEKATSIDDAAPHRIERVALMLGAEGDGLSVQALMAADEWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P+     SLN+  
Sbjct: 242 RIPMAHGVDSLNVGA 256


>gi|167752349|ref|ZP_02424476.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
 gi|167660590|gb|EDS04720.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
          Length = 249

 Score = 43.1 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 30/185 (16%)

Query: 3   PYAPQLQNSA-KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSS 60
           P+ P   ++A +  V+ L   Q   N+G + R    F + ++   +P      + K   +
Sbjct: 84  PHHPFRPDTAQRELVLALDQVQNPGNLGTIIRLADWFGIPEIV-CSPTTADCYNPKVVQA 142

Query: 61  SANADCVIDSVRVFSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           +  A   I  V+V        L +A      +Y T     N + + L P           
Sbjct: 143 TMGA---ILRVKVHYTALEPYLAQARERNIPVYGTFLEGENIYSTPLTP----------- 188

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMEN 171
                  ++ G E  G+        +  +  P  P       SLN++ A  ++  E    
Sbjct: 189 ----GGIVLMGNEGQGIAPAAARHVSHKLFIPPYPADRNGSESLNVAIATAVVCAEFRRQ 244

Query: 172 SIVSS 176
           +    
Sbjct: 245 ASAKR 249


>gi|320533712|ref|ZP_08034329.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134073|gb|EFW26404.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 264

 Score = 43.1 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 34/169 (20%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV---- 67
               ++ L       N+G V R+   F           DG    + RS   NA       
Sbjct: 112 RTPLLVALDQVTDPHNLGAVLRSAGAFG---------ADGVIIPERRSVGVNATVWKVSA 162

Query: 68  --------IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                        +   L++   +  F+                       + +   +  
Sbjct: 163 GAAARVRVARETNLVRALEQLKKEGCFVVGLDGSGST-------------AVEDLTLADS 209

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            + ++ G E  GL+       + ++S P++    SLN + A  + ++E 
Sbjct: 210 PLVLVTGAEGAGLSRLVRETCDVLVSVPISRSVESLNAAVATGISLYEV 258


>gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
 gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
          Length = 254

 Score = 43.1 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 171

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 172 KL---------KENNVPVYGTALENGVPYGEVTPTG-SFALIVGNEGNGVRQEILAKTDQ 221

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 222 NLYIPIYGGAESLNVAVAAGILTY 245


>gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
 gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
 gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
 gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
          Length = 265

 Score = 43.1 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +A ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPTG-SFALIVGNEGNGVRQEILAKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|163793894|ref|ZP_02187868.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159181005|gb|EDP65522.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 191

 Score = 43.1 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +    + GRER  L+ E ++  + ++  P      S+N++ A  +++++ M    + + +
Sbjct: 95  RRAAYVMGRERGALSPELLSRCDHVVRIPSR---FSINLAIAGAMVMYDRMLCMGLFAPR 151

Query: 179 NVKEQNT 185
             +    
Sbjct: 152 PHRPGGP 158


>gi|326329782|ref|ZP_08196102.1| TsnR [Nocardioidaceae bacterium Broad-1]
 gi|325952368|gb|EGD44388.1| TsnR [Nocardioidaceae bacterium Broad-1]
          Length = 172

 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 23/152 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
               N+G + R                       A  +       +D++++   L+    
Sbjct: 34  AYEANLGTLLRTCDAIG-----------------ACLAVPRTKHYLDALQIGDTLRGRRP 76

Query: 83  DLHFIY----ATTARNRNNFKSVLAPK--EAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            +H++        A  R   K ++A +  + A  L     + +   ++ G E  G+ ++ 
Sbjct: 77  CIHWVTPSKEGWIAAQREAGKRIVAVELADGATPLTRLAPAREPTVLLLGHEHQGVPDDV 136

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +A     +  P+     SLN++ A  L+ +  
Sbjct: 137 LAEVEECVEIPMVGWGASLNVAVAGSLVAYRL 168


>gi|298710915|emb|CBJ49268.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 1681

 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 83   DLHFIYATTARNRNNFK--SVLAPKEAAIVLNERIFSGQNVG--IIFGRERWGLTNEEIA 138
            DL    AT+A    +     V  P      L +++   +++   ++ GRE  GL  + I 
Sbjct: 1584 DLTVASATSASLEQSTAAGRVRQPVVMCASLVDKMKFHRHLAYTLVLGRENSGLPLDVIG 1643

Query: 139  LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              +     P   +  SLN   +  +++ E     +V S
Sbjct: 1644 EMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVDS 1681


>gi|291319976|ref|YP_003515234.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
 gi|290752305|emb|CBH40276.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
          Length = 233

 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 14/159 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           V+IL       N G + R      +  + +   R    +      S+        V++  
Sbjct: 86  VLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDRSTDVTSTVLKVSSGGFV---GVKIIK 142

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            SN+  +I  L          +  F    +  +   V   ++    N  ++ G E  G++
Sbjct: 143 VSNIASSIEKL---------KKWGFWIYSSLLDENAVPYNKVQYTGNCALVVGNEEKGVS 193

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +  ++  +  P      S+N+S A  ++++E +  S
Sbjct: 194 KPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNRS 232


>gi|47227791|emb|CAG08954.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 437

 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              ++ G E  G++ E + L+       +  P+ P   SLN + A  ++++E     +  
Sbjct: 374 PAALVIGGETHGVSPEAVRLAGKTGGHRLFIPIVPNVDSLNSAMAASILLFEGRRQLLQR 433

Query: 176 SE 177
            +
Sbjct: 434 MQ 435


>gi|281204193|gb|EFA78389.1| anaphase promoting complex subunit 3 [Polysphondylium pallidum PN500]
          Length = 1113

 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 66/185 (35%), Gaps = 16/185 (8%)

Query: 8    LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVN-----PRDGWPSEKARSSSA 62
            L++      I+  + +   N+  + R+     +  + +++     P +       +  + 
Sbjct: 883  LRSRTDRVAIVCDNVKTTGNVAAIIRSCEAMGIQHIHVIDDQPYTPFNDISKGTEKWVTV 942

Query: 63   NAD-------CVIDSVRV---FSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
            +           +   R     S+L E AI   + +    A       +       +   
Sbjct: 943  HRHHTPLDCVDYLKQQRYQIWSSDLCEGAIRFDNLVKTLPATTTTTSTTTTTTSIISQND 1002

Query: 112  NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            N+   +   + I+FG E+ G+T +   LS+  I  P+  +  S N+S +V + +      
Sbjct: 1003 NDNDDNNNRIAIVFGNEKSGVTEDMKILSDKRIFLPMYGMVQSFNVSVSVGMTLAMLQMQ 1062

Query: 172  SIVSS 176
             ++  
Sbjct: 1063 GVLGG 1067


>gi|84500909|ref|ZP_00999144.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
           HTCC2597]
 gi|84390976|gb|EAQ03394.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
           HTCC2597]
          Length = 265

 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 25/160 (15%)

Query: 8   LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L +  + P ++L+       N+G + R+   F    L ++       + +  + +  A  
Sbjct: 105 LGDGVRPPRVVLLDRVTDPHNVGAILRSAEVFGA--LAVIG-MRHHAAPETGALAKTASG 161

Query: 67  VIDSVRV--FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIF--SG 118
            ++        NL + I +L      +                  EA   L + +     
Sbjct: 162 ALERQPYLRVRNLADTIVELQSMGYLVLGLDG-------------EAGTELEDAVEGLRD 208

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           + V ++ G E  GL  +     + ++       F SLN+S
Sbjct: 209 RPVALVLGAEGPGLRPKTRDTCDRLVRIAFAGSFGSLNVS 248


>gi|121608425|ref|YP_996232.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121553065|gb|ABM57214.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 274

 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 54/185 (29%), Gaps = 19/185 (10%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSS 61
           P    LQ  A    ++L   Q   N+G + R+   F   Q L L      W S K   + 
Sbjct: 105 PAPASLQPGAA--TVVLDRVQDAGNMGSILRSAAAFGFRQVLALKGSAALW-SPKVLRAG 161

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             A   ++       L EA              +     +L     A     R       
Sbjct: 162 MGAHFALN-------LIEAAGPAEL--------QALQLPMLVTSPHAGEYLHRATLPWPC 206

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
             I G E  G+T    A +   I         SLN++ A  + +      +  + E    
Sbjct: 207 AWIMGHEGQGVTPALTAKAALRIRIAQPGGQESLNVAAAAAICLHASSALAAGAGEGMEG 266

Query: 182 EQNTP 186
               P
Sbjct: 267 VSELP 271


>gi|146340002|ref|YP_001205050.1| putative rRNA methylase 23S rRNA
           (guanosine-2'-O-)-methyltransferase rlmB-like
           [Bradyrhizobium sp. ORS278]
 gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA
           (guanosine-2'-O-)-methyltransferase rlmB-like
           [Bradyrhizobium sp. ORS278]
          Length = 297

 Score = 43.1 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 15/158 (9%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVI 68
           + +G +++L       N+G + R+   F++    +V      P      +  ++ A  ++
Sbjct: 142 APEGMILVLDQITDPHNVGAILRSAAAFDVK--AIVTTARHSPEATGVLAKSASGALELV 199

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             + V  NL  A+  L+         R      L    A       +   Q + ++ G E
Sbjct: 200 PMITV-QNLARALTRLN--------ERGFQTVGLD--SAGDTDIAAVTLRQPLALVLGAE 248

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             GL        +A+    +     SLN+S A +L ++
Sbjct: 249 GKGLRQLTRETCSAVARLDMPGAIKSLNVSNAAVLALY 286


>gi|329947308|ref|ZP_08294575.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328525525|gb|EGF52569.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 332

 Score = 43.1 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 10/166 (6%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
               ++ L       N+G V R+   F           DG    + RS   NA  V    
Sbjct: 174 RTPLLVALDQVTDPHNLGAVLRSAGAFG---------ADGVIIPERRSVGVNAT-VWKVS 223

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              +       + + + A     R     V      +  + +   +   + ++ G E  G
Sbjct: 224 AGAAARVRVARETNLVRALEQVKREGCFVVGLDGSGSTDIEDLTLADSPLVLVTGAEGAG 283

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           L+       + + S P++    SLN + A  + ++E       ++ 
Sbjct: 284 LSRLVRETCDVLASVPISRSVESLNAAVATGISLYEVDRLRRRAAH 329


>gi|297571531|ref|YP_003697305.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931878|gb|ADH92686.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 298

 Score = 43.1 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 24/165 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDSVRVFSNLKEAI 81
             N+G + R         + L        + K   SSA +     +++   V   +  A 
Sbjct: 126 PGNVGTIIRCADACGADAVILGRGSVEATNPKVMRSSAGSYFHIPILEDEDVADVVAHAR 185

Query: 82  -ADLHFIYATTARNRNNFKSVLA-----------PKEAAIVLNERIFSGQNVGI------ 123
            A    + A   R   +   +                A     E      +  I      
Sbjct: 186 EAGFQILIA-DGRGEYDLGQLADQALLESEGAQCGAAAQAGSAESAAEPGSAAIDLRRPT 244

Query: 124 --IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             + G E  G T+E+   ++ ++  P+     SLN++ A  + ++
Sbjct: 245 LWMVGNEAHGFTDEQYGYADGLVRIPMWGASESLNVAMATSICLF 289


>gi|159037501|ref|YP_001536754.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157916336|gb|ABV97763.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 296

 Score = 43.1 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 15/169 (8%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   +   N G V R         +          + K   +SA +   +D VR  S+ 
Sbjct: 131 VLAGIRDPGNAGTVLRTADAAGAQVVVFAGAAVDPYNGKVVRASAGSLFHVDVVR-ASDP 189

Query: 78  KEAIADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            + I DL      + ATT    ++   +      A               IFG E  GL 
Sbjct: 190 PQVITDLRAAGLAVLATTGYGADDLDDLADAGRLAA----------PTAWIFGSEAHGLP 239

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           +E    ++A +  P++    SLN++ A  + ++         S     E
Sbjct: 240 DELTTAADARVRVPLHGRAESLNLAAAAAVCLYASARAQRRPSSGRAIE 288


>gi|326673098|ref|XP_001921874.3| PREDICTED: probable methyltransferase TARBP1 [Danio rerio]
          Length = 1083

 Score = 43.1 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
              N+G + R    F    L L +       ++ ++ S +++  +  + V     E ++D 
Sbjct: 939  PTNLGGLCRTCEIFGAKALVL-DSLRHVNDKQFQALSVSSELWLPMMEVKP--AE-LSDF 994

Query: 85   HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
              +     +    +  +   + +     +     +   ++ G ER G+    + L +  +
Sbjct: 995  LQL-----KKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQLLDVCV 1049

Query: 145  SFPVNPLFPSLNISQAVLLMVWECMEN 171
              P   +  SLN+  +  L+VWE    
Sbjct: 1050 EIPQFGVTRSLNVHVSAALLVWEYTRQ 1076


>gi|71894373|ref|YP_278481.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
 gi|71851161|gb|AAZ43770.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 233

 Score = 43.1 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 16/160 (10%)

Query: 13  KGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVI 68
             P I+LV        N+G + R+     +    +V P+      +      S+     I
Sbjct: 80  SKPKIVLVLDHIMDTYNLGAIIRSANAAGIKD--IVMPKENCADITSNVLKVSSGGFIGI 137

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           +  +V S+L   +  L          ++++    +  +              +  I G E
Sbjct: 138 NFYKV-SSLNAFLNKL---------KKHSYWIYGSMLDKNSTSYYSAKYNFPMAFILGNE 187

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++   +   +  I  P +    SLN+S A  +++++ 
Sbjct: 188 EKGISKSALVEVDEKIHIPQSGSVESLNVSVAAGILLFDI 227


>gi|289167184|ref|YP_003445451.1| rRNA/tRNA methylase [Streptococcus mitis B6]
 gi|288906749|emb|CBJ21583.1| rRNA/tRNA methylase [Streptococcus mitis B6]
          Length = 246

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 25/153 (16%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVID------SVRVFS 75
           Q   N+G + R       T   +V+ +     S K   S   +   +          +  
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSEKSADIYSLKTLRSMQGSHFHLPIYRMSSQALLKE 169

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
             + AI     + ATT       K  +  +E   +        +N  ++ G E  G++  
Sbjct: 170 TKEAAIP----VLATT-----LSKDSVDYRELPPI--------ENFVLVMGNEGQGISPL 212

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
               ++ ++   +     SLN++ A  ++++  
Sbjct: 213 MAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|301096896|ref|XP_002897544.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107004|gb|EEY65056.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 618 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFELVRSLNVHVSGALVLWEYTQQQLMSGA 676


>gi|126644106|ref|XP_001388189.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum
           Iowa II]
 gi|51951322|gb|AAU15130.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum]
 gi|126117262|gb|EAZ51362.1| tRNA/rRNA methyltransferase-like protein, putative [Cryptosporidium
           parvum Iowa II]
          Length = 214

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP--VNPLFPSLNISQAVLLMVW 166
           ++   + G E  GL+ + I L + +I  P   N    SLN++ A  ++  
Sbjct: 105 RSTAFLLGNEGTGLSQKYIKLCDYLIHIPLYGNGT-ASLNVAIAGSIVFH 153


>gi|67596101|ref|XP_666055.1| OBP33pep like protein [Cryptosporidium hominis TU502]
 gi|54656965|gb|EAL35825.1| OBP33pep like protein [Cryptosporidium hominis]
          Length = 213

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP--VNPLFPSLNISQAVLLMVW 166
           ++   + G E  GL+ + I L + +I  P   N    SLN++ A  ++  
Sbjct: 105 RSTAFLLGNEGTGLSQKYIKLCDYLIHIPLYGNGT-ASLNVAIAGSIVFH 153


>gi|328773133|gb|EGF83170.1| hypothetical protein BATDEDRAFT_85791 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 354

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 37/179 (20%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNL- 77
           VDPQ   N+G + R+ + F +    +V  RD  P S  +  +SA A   ++++ ++S + 
Sbjct: 181 VDPQ---NLGAILRSAYYFGVDG-VVVTERDSAPFSPISSKASAGA---MEAMPLYSTVN 233

Query: 78  ------KEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNER----------IFSGQ 119
                 + AI     +   T   +++   +   K+     V N+                
Sbjct: 234 LGKLLQESAINGWQILGTNTNAKKSDLIPLCHFKQRCDMEVSNDLDDLKTHTPLLRLDSA 293

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP---------SLNISQAVLLMVWECM 169
              ++ G E  G+        +  +       F          SLN+S A  +++ E +
Sbjct: 294 PTILVLGNEGHGMRTLVSKHCHHHLII-TQDQFSPNFKKSRIDSLNVSVAAGILLHELL 351


>gi|260778120|ref|ZP_05887013.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606133|gb|EEX32418.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 245

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 24/166 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSAN--AD 65
             A+G +I L       N+G + R    + +    +V  +D     + K  S++      
Sbjct: 97  PQAQGLIIALDGVSDPGNLGTIIRVADWYGIK--HIVASKDCADPYNPKTISATMGSFGR 154

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             +  + + S L++A                    V         +++  F+ + + ++ 
Sbjct: 155 VTVSQLDLPSYLEQA-----------------SIPVYGAFLEGESIHKTEFNAEGI-LLM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  G+  +        I+ P      SLN++ A  +++      
Sbjct: 197 GSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQ 242


>gi|256028810|ref|ZP_05442644.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289766714|ref|ZP_06526092.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289718269|gb|EFD82281.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 96

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 31/57 (54%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +I   +   I+FG E  G++++ I +++     P+     SLN++ A  +++++  E
Sbjct: 35  KIELKEKNAIVFGNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIILYKFRE 91


>gi|303282009|ref|XP_003060296.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457767|gb|EEH55065.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 463

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 31/185 (16%)

Query: 9   QNSAKGPVII---LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            ++ KGP  +   L +    +N+G V R+     +  + +        S     +SA A 
Sbjct: 290 SSTVKGPAPVWLALDEVVDPQNLGAVLRSAKFLGVAGVVVCAKNSAPLSPVVSKASAGA- 348

Query: 66  CVIDSVRV------FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
             ++S+ V         L   + D   +Y T A            +E A  + +    G+
Sbjct: 349 --LESMDVRSVGVMHRFLMRCVEDGWDVYGTAA------------EEGAADVADVDARGR 394

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFP-------VNPLFPSLNISQAVLLMVWECMENS 172
              ++ G E  GL         +++           +    SLN+S A  +++   + ++
Sbjct: 395 PSVLVMGNEGAGLRTNVRRACTSMLRIAGGGGEGDDDDGVDSLNVSVATGVILHAMLTSA 454

Query: 173 IVSSE 177
             +  
Sbjct: 455 RRAPA 459


>gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
 gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
 gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
 gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
 gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
 gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
 gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817345|ref|YP_002817354.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
           684]
 gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
 gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
 gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
 gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
 gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
 gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
 gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
 gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
           684]
 gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
          Length = 265

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 22/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-----VFSNL 77
           Q   N+G + R      +  + L        + K   S+  +   +  V+         L
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGNLKEWVDKL 184

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           KE   +   +Y T   N   +  V  P               +  +I G E  G+  E +
Sbjct: 185 KE---NNVPVYGTALENGVPYGEV-TP-------------AGSFALIVGNEGNGVRQEIL 227

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A ++  +  P+     SLN++ A  ++ +
Sbjct: 228 AKTDQNLYIPIYGGAESLNVAVAAGILTY 256


>gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
 gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Kruger B]
 gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Vollum]
 gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Australia 94]
 gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames]
 gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne]
          Length = 254

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 22/149 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-----VFSNL 77
           Q   N+G + R      +  + L        + K   S+  +   +  V+         L
Sbjct: 114 QDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVKGNLKEWVDKL 173

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
           KE   +   +Y T   N   +  V  P               +  +I G E  G+  E +
Sbjct: 174 KE---NNVPVYGTALENGVPYGEV-TP-------------AGSFALIVGNEGNGVRQEIL 216

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A ++  +  P+     SLN++ A  ++ +
Sbjct: 217 AKTDQNLYIPIYGGAESLNVAVAAGILTY 245


>gi|319898475|ref|YP_004158568.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           clarridgeiae 73]
 gi|319402439|emb|CBI75980.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           clarridgeiae 73]
          Length = 271

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 13/166 (7%)

Query: 1   MTPYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +      LQN  +  +I +L      +N+G + R    F  T + +          K+  
Sbjct: 108 LPSLKEFLQNLPEKALIPVLCGISNHDNMGAIFRNAAAFASTGIIVDKTSCDPLYRKSIR 167

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            SA A             +    D+  I  T   N +     L+P  +A    +   + +
Sbjct: 168 VSAGA------ALNVPYTQG--DDIDSII-TALSNADFHLYALSP--SAPRYLKDTKAIK 216

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           +  +IFG E  GL    +  S  +   P+   F S+N++ A  L +
Sbjct: 217 HTALIFGTEGNGLPAHVLQKSETL-RIPMAYGFDSINVATASGLAL 261


>gi|225682465|gb|EEH20749.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb03]
          Length = 565

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 48/216 (22%)

Query: 2   TPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           +P A  L    + P  + L   +   N+G + R+ + F +    +V+ R   P S  A  
Sbjct: 345 SPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFGV-DAVIVSTRSSAPISAVAIK 403

Query: 60  SSANADCVIDSVRVFSNLKEAI---------------------ADLHFIYATTARNRNNF 98
           +SA A    +++ + +     +                             T        
Sbjct: 404 ASAGAA---ENIPILTTTNPTLFVKSSHTNGWKFFAAEAPAAANASQQTLGT------PT 454

Query: 99  KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN--------- 149
           + VL+ +E +  LNE         ++ G E  GL       ++  +  P           
Sbjct: 455 EQVLSRREVSTKLNE-----APCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDR 509

Query: 150 PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
               SLN+S A  L+  E       S+ ++      
Sbjct: 510 AGVDSLNVSVASALLC-EAFLGDPSSNTQDSTPAEE 544


>gi|159491280|ref|XP_001703599.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270618|gb|EDO96457.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 148

 Score = 43.1 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 22/167 (13%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            AP    S    +++L   Q   N+G + R+   F    L L+       ++KA  +S  
Sbjct: 1   AAPSTATSRAVRLLVLDGVQDPGNLGTLVRSALAFGWHGLFLLPGCCDPLNDKAVRASRG 60

Query: 64  AD-CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A   +  +      L+EA  +L                                    V 
Sbjct: 61  AVLRLPVAAGQLRELQEAAEELG-------------------LLLLSSSGSGSGCSGGVA 101

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVWEC 168
           ++ G E  GL+    AL +  ++ P+ P    SLN+  A  L+++  
Sbjct: 102 LVLGSEGQGLSGAVRALCSP-VAVPMTPGAMESLNVGVAGSLLMFAL 147


>gi|320163521|gb|EFW40420.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2069

 Score = 43.1 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            Q   I+ GRER G+  + I L +  +  P   +  SLN+  +  LMVWE     IV +
Sbjct: 2008 QKSLILLGRERTGIPVDLIQLLDVCVEIPQFGVVRSLNVHVSAALMVWEYARQHIVPA 2065


>gi|254501987|ref|ZP_05114138.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438058|gb|EEE44737.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 209

 Score = 43.1 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               + G ER  L+ + +   + ++  P    F   N++ A  +++++        +++ 
Sbjct: 124 QAAYVLGPERGSLSPQMLERCDHVVKIPT--KFCI-NVAMAGAIVMYDRHRAMGRYADRA 180

Query: 180 VKEQNT 185
           V     
Sbjct: 181 VSSGAP 186


>gi|109898550|ref|YP_661805.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica
           T6c]
 gi|109700831|gb|ABG40751.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica
           T6c]
          Length = 198

 Score = 43.1 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 34/162 (20%)

Query: 13  KGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           K   + L   +P+  +N+G + RA   +    +       G    +AR+ + +   V  +
Sbjct: 26  KKDSVALCIINPKSPQNMGSILRAAGCYGADTIY----YTGERYARARAFNTDTKNVGLN 81

Query: 71  VRVFS-NLKE-----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           + V      E     A+  +  +   T            PK              +   +
Sbjct: 82  IPVEQVTTPEPAPGIAMVAVELVEGAT-----PLPHFRHPK--------------HAYYV 122

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           FG E   +    +     ++  P       +N++  V ++++
Sbjct: 123 FGPEDGSIEQSVLDRCQHVVYVPTKGC---MNLAATVNVLLY 161


>gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial
           [Meleagris gallopavo]
          Length = 375

 Score = 43.1 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 54/239 (22%)

Query: 3   PYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++   A    ++L+  + +   N+G + R+       ++ L          K   +
Sbjct: 140 PDHAKMSYPAAQLPLVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRA 199

Query: 61  SANADCVIDSVRVFSNLK-EAI-----ADLHFIYA-------------TTARNRNNFKSV 101
              A      V + +NL  E++     + +    A             T+ R   +    
Sbjct: 200 GMGAHF---RVPIVANLDWESVPSNLPSGVRVCVADNKDPGAQAETEPTSQRAGRSGSHS 256

Query: 102 LAPKEA----------------------AIVLNERIFSGQ----NVGIIFGRERWGLTNE 135
             PK                        A  L  + +          ++ G E  GL+ +
Sbjct: 257 GNPKAPVKPKYKAAPPEHEDEERTEGVSASELAAQYYYENWMRSPAAVVVGGETHGLSPD 316

Query: 136 EIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKG 190
            + L+ +     +  PV P   SLN + A  ++++E              E+      G
Sbjct: 317 ALHLAASTGGKRLVIPVVPGVDSLNSAVAAAIVLFEGKRQLQRRRHNQEDERQKYPVMG 375


>gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM
           2228]
          Length = 269

 Score = 43.1 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  GL  + +  +   I  P+     SLN + A  ++ +E +  ++  S
Sbjct: 215 LMIGNEANGLDPQLLTKAKTKIKIPLAGEIESLNAAVAASVIAFEILAQALKKS 268


>gi|294625418|ref|ZP_06704050.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600293|gb|EFF44398.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 305

 Score = 43.1 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 25/183 (13%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKA 57
           P    L    +GPV+ L    V      N G + R+  +F +  L L      G     A
Sbjct: 140 PLQEWLAALPQGPVLALWLDGVG--NPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAA 197

Query: 58  RSSSANADCVIDSVRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNER 114
           R +   A+ V   +    +   A+A L    F  A T  +             A  L +R
Sbjct: 198 RVAEGGAEAVP--LVQLPDTATALAQLRQAGFAIAATLVDGGQ-------DVFAAALPQR 248

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           +        + G E  G+        +  +S   +    SLN++ A  +         + 
Sbjct: 249 L------VYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHARMLT 302

Query: 175 SSE 177
              
Sbjct: 303 GEH 305


>gi|317124864|ref|YP_004098976.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315588952|gb|ADU48249.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 271

 Score = 43.1 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 14/136 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83
           N+G V R+     +    LV PR   P   ++   S      +   R+  +      +  
Sbjct: 133 NVGAVFRSAAALGV-DAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIDPWPGGMAVLQS 191

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F  A  A         L+    A+ + E       V ++ G E  GL    +A ++ +
Sbjct: 192 HGFTVAALA---------LSDDAVALDVLE-AAPPTKVAVVLGAEGDGLGGTTVAAADVV 241

Query: 144 ISFPVNPLFPSLNISQ 159
           +  P+     SLN++ 
Sbjct: 242 VRIPMAGGVDSLNVAA 257


>gi|146078921|ref|XP_001463640.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|321399555|emb|CBZ08742.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 518

 Score = 43.1 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 48/208 (23%)

Query: 2   TPYAPQLQNSAKGPVI----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
            P A  L +      +    +LV  ++  N+G + RA  +       LV+     P+++ 
Sbjct: 266 PPVARPLHDPFGHHAVGAMLVLVGLRIPSNVGTLLRAAADMGYDAAVLVS--CADPTQEK 323

Query: 58  RSSSANADCVIDSVRVF--SNLKEAIADLHFIYATTARNRNNFKSVLAP---KEAAIVLN 112
              +++   +  ++R++     ++A      + ++ A   +    +  P    E+A  + 
Sbjct: 324 VLRASDGTALSPTLRIYETETTEQA---CVSLLSSIAAQHHLMPFLAVPSQEVESAFEVA 380

Query: 113 ER-------------------IFSGQNVGI------------IFGRERWGLT--NEEIAL 139
           +R                     +G + G+            I G E  GL   N    +
Sbjct: 381 KRFHVYNAKSKEAATSQVSGGAAAGHSDGLCAAPTKQLGAMVILGSEAQGLRGLNGRWGV 440

Query: 140 SNAIISFP-VNPLFPSLNISQAVLLMVW 166
              +++ P  NP+  SLN+S A  +++ 
Sbjct: 441 PYQLVTLPLSNPMVDSLNVSVAGSVLMH 468


>gi|206900335|ref|YP_002251024.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206739438|gb|ACI18496.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 266

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 27/185 (14%)

Query: 1   MTPYAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPS 54
           ++P    L+N      I+L   D Q   N+G + R      +    L    V+P   +  
Sbjct: 102 LSPKWEILKNKDNK--IVLYSDDIQDPGNLGTIIRVADGVGVDAFILSENTVDP---YNY 156

Query: 55  EKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
           +  R+S+ +   V   +       E   D   + A              PK + +   E 
Sbjct: 157 KVIRASTGSIFRVPIWISDDKTFVEFFKDWKIVIA-------------DPKGSKLYFEEN 203

Query: 115 IFSGQNVGIIFGRERWGLTNEE-IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
               ++  +I G E WG+  E+ + L+  ++  P+     SLN+S A  + ++E      
Sbjct: 204 FK--ESFVLILGNEAWGIKKEKYLDLNPILLRIPLRKGVDSLNVSVAASVFLFEAQRQRY 261

Query: 174 VSSEK 178
           ++ E+
Sbjct: 262 ITKEE 266


>gi|206895377|ref|YP_002246755.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737994|gb|ACI17072.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 253

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 30/170 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCVIDSVRV 73
           +++L   Q   N+G + R    F+   +      D +  +  R+ + N  A        V
Sbjct: 108 IVVLEQLQDPGNLGTILRTAAAFDYGVILTTGSADVYNPKVVRALAGNFLAPF------V 161

Query: 74  FSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +    EA+    +    TT ++                        Q   I+ G E  GL
Sbjct: 162 YVTGGEALELCKNLFVVTTYKSSEKP---------------DFKWRQPFAIVLGNEGQGL 206

Query: 133 TNE--EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           T     IA +NA    P      SLN+S    +++WE  +     S  ++
Sbjct: 207 TESWRRIAKANAW--IPSKVE--SLNVSVTSAILMWEGTKIGTAKSSGDL 252


>gi|241205747|ref|YP_002976843.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859637|gb|ACS57304.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 153

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 25/169 (14%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
                + L  P +  N G + R         + L+ P     S++    +      I + 
Sbjct: 1   MTSLRLALYQPDIPGNTGTILRLAACLGFA-VDLIEPAGFDISDRNLKRA--GMDYIAAA 57

Query: 72  RVFSNLK----EA---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +  ++     EA         I A+T            P +                ++
Sbjct: 58  ALTRHVNWDRFEAWRLTTGRRLILASTKAAERYTDLAFRPDDV---------------LL 102

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           FGRE  G+ ++    ++A +  P+     S+N++ +  ++V E M  ++
Sbjct: 103 FGRESAGVPDQVHERADARVLIPMVEGQRSINVAVSAAMIVGEAMRQTV 151


>gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 245

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 26/46 (56%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + + ++ G E  G++ E +AL++ ++   +     SLN++ A  ++
Sbjct: 195 ERLALVLGNEGQGISAEMVALADQLVHITMPGQAESLNVAVAAGIL 240


>gi|325186501|emb|CCA21041.1| hypothetical protein VOLCADRAFT_116506 [Albugo laibachii Nc14]
          Length = 314

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 34/205 (16%)

Query: 30  MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID-------SVRVFSNLKEAIA 82
            V R      +  + +V P        A   +  +D  I        SVR F   +  + 
Sbjct: 102 AVLRTAECLGVQHVWIVEP--------AFYKAVKSDRRIARQSSQWISVRRFKTSEACL- 152

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                 A  A     + + L+ +  ++           + I+ GRE  G++   +  +  
Sbjct: 153 -----VALFAEGYEVWATDLSQRSVSLQSGTLSVPD-RLAIVMGRETDGVSETMLQAAQH 206

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYL--- 199
            +  P+     SLN++ A  +++++          +   E+     K    ++   L   
Sbjct: 207 RVYLPIYGFTDSLNLNVATGMVLFQIFSMCPEMRGQMEAEERNTLRK----AWYQKLDPS 262

Query: 200 EISLEERGYFRPVEKKKKMLDDLYS 224
           +  L+   Y    E    +  DL  
Sbjct: 263 QDVLDR--YI---ESPPSVFQDLRR 282


>gi|313619707|gb|EFR91326.1| probable tRNA/rRNA methyltransferase [Listeria innocua FSL
          S4-378]
          Length = 69

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
          I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5  IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74 FSNLKE 79
          + +L E
Sbjct: 61 YDSLDE 66


>gi|313609697|gb|EFR85183.1| probable tRNA/rRNA methyltransferase [Listeria monocytogenes FSL
          F2-208]
          Length = 80

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
          I+L  P++  N G ++R          L L+ P      +K    +       D+V++  
Sbjct: 5  IVLYQPEIPANTGNISRTCA--GTDTYLHLIRPLGFSTDDKMLKRA--GLDYWDNVKLSY 60

Query: 74 FSNLKE 79
          + +L E
Sbjct: 61 YDSLDE 66


>gi|226289866|gb|EEH45350.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb18]
          Length = 565

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 48/216 (22%)

Query: 2   TPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           +P A  L    + P  + L   +   N+G + R+ + F +    +V+ R   P S  A  
Sbjct: 345 SPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFGV-DAVIVSTRSSAPISAVAIK 403

Query: 60  SSANADCVIDSVRVFSNLKEAI---------------------ADLHFIYATTARNRNNF 98
           +SA A    +++ + +     +                             T        
Sbjct: 404 ASAGAA---ENIPILTTTNPTLFVKSSHTNGWKFFAAEAPAAANASQQTLGT------PT 454

Query: 99  KSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN--------- 149
           + VL+ +E +  LNE         ++ G E  GL       ++  +  P           
Sbjct: 455 EQVLSRREVSTKLNE-----APCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDR 509

Query: 150 PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
               SLN+S A  L+  E       S+ ++      
Sbjct: 510 AGVDSLNVSVASALLC-EAFLGDPSSNTQDSTPAEE 544


>gi|224024447|ref|ZP_03642813.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
           18228]
 gi|224017669|gb|EEF75681.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
           18228]
          Length = 250

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 24/157 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +  +   N      + K   ++  A   +  V++         
Sbjct: 111 QDPGNLGTIIRIADWFGIHHIFCSNGCVDAFNPKTVQATMGA---LARVQLHY------- 160

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    A+ +     V         L  +  S   + II G E  G++ +     N 
Sbjct: 161 -CDLPAFLQAQPKEV--PVFGTFLDGENLYAQELSTNGI-IIMGNEGNGISPQVAQSVNR 216

Query: 143 IISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            +  P    +P       SLN++ A  ++  E    S
Sbjct: 217 RLLIP---NYPQGQTTSESLNVAVATAIVCAEFRRRS 250


>gi|237843303|ref|XP_002370949.1| RNA methyltransferase, putative [Toxoplasma gondii ME49]
 gi|211968613|gb|EEB03809.1| RNA methyltransferase, putative [Toxoplasma gondii ME49]
 gi|221481851|gb|EEE20221.1| RNA methyltransferase, putative [Toxoplasma gondii GT1]
 gi|221502350|gb|EEE28083.1| RNA methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 840

 Score = 43.1 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G++ R         +  V+      + K    S      +       +++  +     
Sbjct: 668 NVGILVRTAAALGFDGVYYVDGTADPFNWKVMEISRGLHYNLPH--FHGSVENLLRMCE- 724

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                  +     +     E        +   + +  I G E  GL+   +      ++ 
Sbjct: 725 ------ESDLLPIAADTTGERPEAFQGAVTKHRGICCILGNESHGLSELILQRCRR-VAL 777

Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
           P++ L  SLN+  A  ++++E  +
Sbjct: 778 PMSSLLDSLNVGIAGGIVMYEMKK 801


>gi|160900365|ref|YP_001565947.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
 gi|160365949|gb|ABX37562.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
          Length = 263

 Score = 43.1 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L   Q   N+G + R+   F  +Q+  +       S+K   +   A   +  V   S
Sbjct: 117 TVVLDRVQDAGNVGSILRSAAAFGFSQVVALKGTAALWSQKVLRAGMGAHFGLQLVESAS 176

Query: 76  NLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +   +A+  L  I  T++       +   P   A                 G E  G+  
Sbjct: 177 SEDLDAL-GLPLIV-TSSHQGELIHNAALPWPCA--------------WAMGHEGQGVGE 220

Query: 135 EEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
             +  +   +    P      SLN++ A  + + 
Sbjct: 221 ALMQRAAQHVRIGQPGGEE--SLNVAAAAAICLH 252


>gi|21244041|ref|NP_643623.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109661|gb|AAM38159.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score = 43.1 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 23/182 (12%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           P    L    +GPV+ L    V      N G + R+  +F +  L L        S  A 
Sbjct: 140 PLQEWLAALPQGPVLALWLDGVG--NPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAA 197

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLH---FIYATTARNRNNFKSVLAPKEAAIVLNERI 115
             +      +  V++      A+A L    F  A T  +             A  L +R+
Sbjct: 198 RVAEGGAEAVPLVQLPDT-ATALAQLRQAGFAIAATLVDGGQ-------DVFAAALPQRL 249

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                   + G E  G+        +  +S   +    SLN++ A  +         +  
Sbjct: 250 ------VYVMGAESDGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHARMLTG 303

Query: 176 SE 177
             
Sbjct: 304 EH 305


>gi|322387093|ref|ZP_08060704.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
 gi|321142080|gb|EFX37574.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
          Length = 246

 Score = 43.1 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 17/164 (10%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSAN 63
            QL + ++G  + L D Q   N+G + R       +   +V+ +  D +  +  RS   +
Sbjct: 94  EQLPDLSQGKYLFLEDVQDPGNVGTIIRTADAAGFSG-VIVSSKSADIYSLKTLRSMQGS 152

Query: 64  ADCVIDSVRVFSNL-KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +           +EA  +   I ATT     N K               +   ++  
Sbjct: 153 HFHLPIYRMPVETFVEEAKKNHLPILATTLSQ--NSKDYR-----------ELDRLEDFA 199

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ G E  G++      ++ ++   +     SLN++ A  ++++
Sbjct: 200 LVMGNEGQGISPFMTDQADQLVHISMKGQAESLNVAIAAGILMF 243


>gi|320162456|ref|YP_004175681.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319996310|dbj|BAJ65081.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 250

 Score = 43.1 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 10/156 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q  +N+G + R+        + +   R    +     +S+ A   +   +  +NL +A+ 
Sbjct: 104 QNPQNLGTLLRSAEAVGAHGVVIPLARAAGITPAVVQASSGASEHLLVAQ--ANLAQALE 161

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                   T +   +   V           +R+     + ++ G E  G+        + 
Sbjct: 162 --------TFKEEADAWVVGLEGSPESEPYDRVRLDGALVLVVGNEGEGMRPLVRRHCDV 213

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           ++S P+     SLN + A  +M+++ +E      E 
Sbjct: 214 LVSLPMRGKIESLNAAVAGSIMLYKALEARSRREEA 249


>gi|284033331|ref|YP_003383262.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283812624|gb|ADB34463.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 279

 Score = 43.1 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 19/137 (13%)

Query: 46  VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
           V+P     + KA  +S  +   +                  I A     R+    VLA  
Sbjct: 153 VDPH----NPKAVRASVGSLFHLPIAVEVD-----------IPAAAKSWRDQGVQVLAAD 197

Query: 106 EAAIVLNERIFSGQNVG----IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAV 161
               V  +       +      +FG E  GL +   A+ +  +  P+     SLN++ A 
Sbjct: 198 GYGSVDLDECIDDGTLAKPTVWLFGNEAHGLPDGFDAIVDRSVKVPIYGRAESLNLATAA 257

Query: 162 LLMVWECMENSIVSSEK 178
            + ++       V    
Sbjct: 258 AVCLYASARAQRVVEPP 274


>gi|153838665|ref|ZP_01991332.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
 gi|149747943|gb|EDM58809.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
          Length = 244

 Score = 43.1 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  AKG +I L       N+G + R    + +  +          + K  S++  +   +
Sbjct: 96  EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRV 155

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
               V  +L   +A+ +               V         +++  FS + + ++ G E
Sbjct: 156 QVSLV--DLPSYLAEANL-------------PVYGAFLEGESVHKTEFSAEGI-LLMGSE 199

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+  E        I+ P      SLN++ A  +++      
Sbjct: 200 SHGVREEASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|51598770|ref|YP_072958.1| rRNA methylase [Borrelia garinii PBi]
 gi|51573341|gb|AAU07366.1| rRNA methylase [Borrelia garinii PBi]
          Length = 246

 Score = 43.1 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVTN-- 157

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              I +  +        ++ F  + A       +N+   + + + +I G E  G+     
Sbjct: 158 ---INNTIYFL-----KKHGFW-IYAGDIKGQDINKIKINDKKIALILGNESKGVHKLIK 208

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             S+ +I  P +    SLN+S +  ++++E    
Sbjct: 209 ENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|84389413|ref|ZP_00991219.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|84376928|gb|EAP93801.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
          Length = 170

 Score = 43.1 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 30/162 (18%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS----ANADC 66
           +    +I L +P+   N+G V RA   + + +   V    G   EKA        + A  
Sbjct: 2   NKSHVIIGLTNPKSPTNVGAVMRAAGCYQVDE---VK-YTGQRYEKAAKFHTDTKSAART 57

Query: 67  V-IDSVRVF-SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
           + + +   F  NL    A+   +              +   E A  L  R    +N   I
Sbjct: 58  IPLTAAESFLDNLD---AETQIVC-------------VELAEGATPLP-RFKHPENAIYI 100

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           FG E   ++ +    ++ ++  P       +N++  V ++++
Sbjct: 101 FGPEDGSISQDVADRADHVVYVPT---VGCMNLAATVNVLLY 139


>gi|119357948|ref|YP_912592.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
 gi|119355297|gb|ABL66168.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
          Length = 268

 Score = 43.1 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 14/155 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           +  +I L + Q   N+G + R    F    L          + K   SSA +   +    
Sbjct: 119 RSLLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYALPH-Y 177

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               L  A+ +L       A       S L            +   Q   ++ G E  G+
Sbjct: 178 TVERLDLALEEL------AASGYAIICSSLD----GEDFRSFVSWPQKQVLVIGNEANGV 227

Query: 133 TNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164
           +     L+  ++  P         SLN S +  ++
Sbjct: 228 SRVVQNLAERLVRIPHGGGKSRVESLNASVSAAIL 262


>gi|315223129|ref|ZP_07864997.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
           anginosus F0211]
 gi|315187818|gb|EFU21565.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
           anginosus F0211]
          Length = 246

 Score = 43.1 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 15/167 (8%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
                 +  KG  + L D Q   N+G + R         + +        + K   S   
Sbjct: 92  EKQSAPSFLKGKYLFLEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSMQG 151

Query: 64  ADCVIDSVRV-FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +   +   RV  ++  E    +   I ATT       K  +  +E A +         + 
Sbjct: 152 SHFHLPVYRVKTADFLELAKQVQLPILATT-----LSKDSMDYRELAPL--------SDF 198

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++ G E  G+++E    ++ +I   +     SLN++ A  ++++  
Sbjct: 199 ALVLGNEGQGISHEMAEAADNLIHISMKGRAESLNVAVAAGILIFAL 245


>gi|301096902|ref|XP_002897547.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107007|gb|EEY65059.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 769

 Score = 43.1 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 706 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 764


>gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
          Length = 380

 Score = 43.1 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            E  GL+       + ++S P+     SLN S A  +++
Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|261219673|ref|ZP_05933954.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261322562|ref|ZP_05961759.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|260924762|gb|EEX91330.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261295252|gb|EEX98748.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
          Length = 171

 Score = 43.1 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++    +      ++   +
Sbjct: 16  RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRTLKRA--GMDYLEQAAL 70

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +      D        A  +N  + ++     A +        +N  ++FGRE  G+ 
Sbjct: 71  TRHPDWNRFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 ++  +  P+     SLN++ +V +   E +  
Sbjct: 123 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 160


>gi|150005579|ref|YP_001300323.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
           8482]
 gi|149934003|gb|ABR40701.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
           8482]
          Length = 251

 Score = 42.7 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 33/162 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF----SNLK 78
           Q   N+G + R    F +  +          + K   ++  A   +  V+V       L 
Sbjct: 111 QDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGA---LARVKVHYCSLPQLI 167

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E++ D+  +Y T                   ++     S   + I+ G E  G++ E   
Sbjct: 168 ESLTDIP-VYGT--------------FLNGNIIYTESLSAHGL-IVMGNEGKGVSPEVEK 211

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSI 173
           L N  +  P    +P       SLN++ A  ++  E     +
Sbjct: 212 LINKKLYIP---NYPQERETSESLNVAIATAVVCSEFRRRLL 250


>gi|300870064|ref|YP_003784935.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
           95/1000]
 gi|300687763|gb|ADK30434.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
           95/1000]
          Length = 237

 Score = 42.7 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 15/163 (9%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSAN 63
             L+ ++   + IL       N+G + R  + F+L  + +  P+D     +EK    SA 
Sbjct: 81  RALEKTSTPLIFILDSITDVHNLGAIIRNAYFFDLGGIII--PKDNAAPINEKVYEISAG 138

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A   +  + + +NL   I             ++    V    E      E         I
Sbjct: 139 AAYHLP-ISIETNLNRVIE----------IMKDKGFWVYYASEKGDTSLENFKFDTPTAI 187

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           I G E  G+ +     S+  I       F SLN+S A  ++ +
Sbjct: 188 ILGNEHSGVRDSLKKNSDGSIIIRAQSDFDSLNVSAASAIISY 230


>gi|86131592|ref|ZP_01050190.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818037|gb|EAQ39205.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 153

 Score = 42.7 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 105 KEAAIVLNERIFSGQ------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           +   + L+ER    +          + G E  GLT E I  S+ ++ F       SLN++
Sbjct: 80  RIVGVELDERAQPLETFEHPRRCVYLLGAEDHGLTREAIDRSHFLVKFSST---LSLNVA 136

Query: 159 QAVLLMVW 166
            A  ++++
Sbjct: 137 VAGSIVLY 144


>gi|296200974|ref|XP_002747842.1| PREDICTED: RNA methyltransferase-like protein 1 [Callithrix
           jacchus]
          Length = 429

 Score = 42.7 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E      V
Sbjct: 349 APAAVVVGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGRRQLRV 408

Query: 175 SSEK 178
            +E 
Sbjct: 409 RAEH 412


>gi|317477065|ref|ZP_07936307.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906858|gb|EFV28570.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 253

 Score = 42.7 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 29/161 (18%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FSNLKEA 80
           Q   N+G + R    F +      +P      + K   ++      I  V++ +++L   
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDAYNPKTIQATMGG---IARVKLHYTSLPGL 167

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I  L                V         +  +  S   + I+ G E  G+ NE   L 
Sbjct: 168 IGSL------------KDIPVYGTFLDGENMYTQPLSAHGL-IVMGNEGNGIGNEVKQLI 214

Query: 141 NAIISFPVNPLFPS-------LNISQAVLLMVWECMENSIV 174
           N  +  P    +PS       LN++ A  ++  E    + +
Sbjct: 215 NRKLYIP---NYPSTRETSESLNVAIATAVVCAEFRRQAAL 252


>gi|218249262|ref|YP_002375025.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           ZS7]
 gi|226321825|ref|ZP_03797351.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           Bol26]
 gi|218164450|gb|ACK74511.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           ZS7]
 gi|226233014|gb|EEH31767.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           Bol26]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNIN 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N    + +  F              +         +N+   + + + +I G E  G+   
Sbjct: 160 NTINLLKNYGF-------------WIYTGDIKGQNINKIKINDKKIALILGNEGKGVHKL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               S+ +I  P +    SLN+S +  ++++E    
Sbjct: 207 IKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|71403879|ref|XP_804694.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70867801|gb|EAN82843.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 299

 Score = 42.7 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 68/175 (38%), Gaps = 14/175 (8%)

Query: 4   YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           +   L+   + P+I+L    Q   N+  + R    F + +  +V+ +  +      +++ 
Sbjct: 134 HPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFAIEK-VVVSDQAVFAHPHFVAAAR 192

Query: 63  NAD-CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQN 120
           +A+  +     +  NL E +             R +  +++  ++ A  V        + 
Sbjct: 193 SAELWMPWDAVMAKNLPEYL----------GSLRQDGYTLIGIEQTAGSVSIASYRFPER 242

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             I+ G E  G+  E + + +  +  P   L  SLN+     L+++E     ++ 
Sbjct: 243 AAILLGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHLME 297


>gi|149724758|ref|XP_001502222.1| PREDICTED: similar to RNA methyltransferase-like protein 1 [Equus
           caballus]
          Length = 420

 Score = 42.7 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSN----AIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E  G++ E + L+       +  PV P   SLN + A  ++++E      V
Sbjct: 349 APAAVVIGGETHGVSLESLQLAENTGGKRLVIPVVPGVDSLNSAMAASILLFEGKRQLRV 408

Query: 175 SSEKNVKEQNT 185
            +E   +++++
Sbjct: 409 RAEHWSRDRSS 419


>gi|34556873|ref|NP_906688.1| hypothetical protein WS0446 [Wolinella succinogenes DSM 1740]
 gi|34482588|emb|CAE09588.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 257

 Score = 42.7 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV-RVFSN 76
           +L       NIG + R+ +   +  + L N    +  E A  +S+ A  +++    +  N
Sbjct: 114 VLHGVSDSGNIGGIFRSAYCLGMEGVILTN-LSSFSIESAIRTSSGA--LLELPFGIVKN 170

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG----IIFGRERWGL 132
             + I +L     T                    L   I +G++      +  G E  GL
Sbjct: 171 PWDLINELRGAGFT---------------LYGAALEGEIPNGKSFASKRALFMGSEGEGL 215

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             + ++  + ++   +   F SLN+  A  ++
Sbjct: 216 PKKLLSKLDQLLKIEMERDFDSLNVGVAAAIL 247


>gi|94985187|ref|YP_604551.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
 gi|94555468|gb|ABF45382.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
          Length = 263

 Score = 42.7 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 96  NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSL 155
              +    P    +  +  +     V ++ G E  GL       +   +  P++    SL
Sbjct: 185 RLTRVACTPDAPQVYWDAPLT--GRVALVLGAEHEGLPPA-WRAAEMPVRVPMHGTADSL 241

Query: 156 NISQAVLLMVWECMENSIVSS 176
           N++ A  L+++EC+    V+S
Sbjct: 242 NVATAAALVLYECVRQRRVAS 262


>gi|308812149|ref|XP_003083382.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
 gi|116055262|emb|CAL57658.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
          Length = 320

 Score = 42.7 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 25/163 (15%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           VDPQ   N+G + R+     +  + +        +     +SA A   +++  V      
Sbjct: 175 VDPQ---NLGAMLRSAHFLGVDGIVVCTKNSAPFNATVSKASAGA---MEAQVVHRT--- 225

Query: 80  AIADLHFIYATTARNRNNFKSVL----APKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
               +H   A   R R++   V+     P+   I   E         ++ G E  G+   
Sbjct: 226 --GVMHRFLA---RARDDGWDVVGAAADPRAENIHAFEVAAP---TVLVVGNEGVGIRTN 277

Query: 136 EIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENSIV 174
                N ++S P          SLN+S A  +++   + +  V
Sbjct: 278 VRRACNRLVSIPRGVSATDGVDSLNVSVAAGILIHALLASRTV 320


>gi|47228934|emb|CAG09449.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1600

 Score = 42.7 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 23/159 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS-NLKEAI-- 81
              N+G + R    F  + L L +       +  +S S +++  +  + V    L E +  
Sbjct: 1458 PTNLGGLCRTCEIFGASVLVL-DSLHHVRDKHFQSLSVSSELWLPLMEVKPVQLTEFLQV 1516

Query: 82   --ADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + + I     TA +R+  +    P              +   +I G ER G+    +
Sbjct: 1517 KKNEGYCIVGVEQTANSRSL-QDYQFP--------------EKTLLILGNEREGIPANLL 1561

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             + +  +  P   +  SLN+  +  L++WE     ++S 
Sbjct: 1562 QMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQHLISG 1600


>gi|218131049|ref|ZP_03459853.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697]
 gi|217986753|gb|EEC53086.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697]
          Length = 253

 Score = 42.7 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 29/161 (18%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FSNLKEA 80
           Q   N+G + R    F +      +P      + K   ++      I  V++ +++L   
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDAYNPKTIQATMGG---IARVKLHYTSLPGL 167

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I  L                V         +  +  S   + I+ G E  G+ NE   L 
Sbjct: 168 IGSL------------KDIPVYGTFLDGENMYTQPLSAHGL-IVMGNEGNGIGNEVKQLI 214

Query: 141 NAIISFPVNPLFPS-------LNISQAVLLMVWECMENSIV 174
           N  +  P    +PS       LN++ A  ++  E    + +
Sbjct: 215 NRKLYIP---NYPSTRETSESLNVAIATAVVCAEFRRQAAL 252


>gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R]
 gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 313

 Score = 42.7 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVI-----DS 70
           +IL +     N+G V R++  F    + +   R    +  A  +SA  A  V      + 
Sbjct: 165 VILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNM 224

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV    ++                 N   V+          +      NV I+ G E  
Sbjct: 225 TRVVKEFQQ-----------------NGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGK 267

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G++       + I+S P      SLN S A  +++ E     
Sbjct: 268 GISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQR 309


>gi|325919147|ref|ZP_08181205.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
 gi|325550388|gb|EGD21184.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
          Length = 153

 Score = 42.7 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 15/154 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN-LKEA-IA 82
             N G + R+  +F +  L L        S  A   +      +  V++    L  A + 
Sbjct: 12  PHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTALAMAQLR 71

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F  A T  +             A  L +R+        + G E  G+  +     + 
Sbjct: 72  QAGFAVAATLADGGE-------DVFAAALPQRL------VYVMGAESEGMDRQFARDCDL 118

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +S   +    SLN++ A  +        ++   
Sbjct: 119 QLSIRGSGKVESLNVASATAVFQAAWRARTLSGQ 152


>gi|332262651|ref|XP_003280373.1| PREDICTED: RNA methyltransferase-like protein 1 [Nomascus
           leucogenys]
          Length = 420

 Score = 42.7 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +     ++ G E +G++ E + L+ +     +  PV P   SLN + A  ++++E     
Sbjct: 347 TAAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 406

Query: 173 IVSSEKNVKEQNT 185
              +E+  ++++ 
Sbjct: 407 RGRAEQLSRDRSY 419


>gi|90408176|ref|ZP_01216344.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3]
 gi|90310706|gb|EAS38823.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3]
          Length = 173

 Score = 42.7 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 34/162 (20%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGW---PSEKARSSSA-----NA 64
           K  +I L +P+   N+G   RA   + + ++     R       +   +   +       
Sbjct: 4   KQVIIGLSNPKSASNVGATLRAAGCYGVDKVIYTGTRYDRAVKLNTDTKKMKSQIALLGV 63

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             ++++       KEA      +              +   E AI L         +  +
Sbjct: 64  SHLLEN-------KEA---QTKVIC------------VDLIEGAIPLPNFEHPDNAL-YL 100

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           FG E   L+   I  ++A++  P       +N++  V ++++
Sbjct: 101 FGPEDGTLSQSLIDSADAVVYIPT---QGCMNLAATVNVVLY 139


>gi|317010773|gb|ADU84520.1| RNA methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 227

 Score = 42.7 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSIKMRRNFDSLNVSVAAGIL 222


>gi|163750174|ref|ZP_02157416.1| RNA methyltransferase, TrmH family, putative [Shewanella benthica
           KT99]
 gi|161330030|gb|EDQ01014.1| RNA methyltransferase, TrmH family, putative [Shewanella benthica
           KT99]
          Length = 183

 Score = 42.7 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 23/153 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           LV+P+   N+G V RA       Q       +   + K  + +A           ++   
Sbjct: 18  LVNPKSPTNVGGVMRAA---GCYQA-----NEILYTGKRYALAAK-----HRGEQYNT-D 63

Query: 79  EAIADLHF-IYAT----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              A  H  + AT    +AR        +   E AI L E +   + +  +FG E   + 
Sbjct: 64  TKRAGQHIPLTATDDLLSARTDGVKLVCVDLVEGAIPLPEFVHPDKAI-YVFGPEDGTIE 122

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              I  ++A++  P       +N++ +V ++++
Sbjct: 123 QALIDAADAVVYVPT---IGCMNLASSVNVLLY 152


>gi|156396442|ref|XP_001637402.1| predicted protein [Nematostella vectensis]
 gi|156224514|gb|EDO45339.1| predicted protein [Nematostella vectensis]
          Length = 171

 Score = 42.7 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 31/167 (18%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F   +L L    +       +  S ++   +D  +V             
Sbjct: 24  NLGGLCRTCEIFGAKRLVL-GSNEVMNDPYFKGLSVSSSKWVDIEQV------------- 69

Query: 87  IYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNVG---------IIFGRERWGLTNE 135
                 R       + A +     L   E+  + + +          ++ G E+ G+  E
Sbjct: 70  ------RPAELNNYLDAMRHDGYSLIGVEQTANSKRLTDFTFPHKTLLLLGNEKEGIPVE 123

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
            I   +A +  P   +  SLN+  +  L++WE  +  I+S  +   E
Sbjct: 124 LIQQLDACVEIPQVGVIRSLNVHVSGALLIWEYTKQCILSKREAAIE 170


>gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 245

 Score = 42.7 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 15/160 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
                 +G  +IL D Q   N+G + R         + L        + K   S   +  
Sbjct: 94  AFPTDYQGKYLILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHF 153

Query: 67  VID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +      ++   +E       + ATT                  V  + +   ++  ++
Sbjct: 154 HLSIWRTDIYKICREMQEHNTPVLATTLSK-------------VSVDYKTVPHQESFALV 200

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            G E  G++ E  AL++ ++   +     SLN++ A  ++
Sbjct: 201 MGNEGQGISAEMTALADQLVHITMPGQAESLNVAVAAGIL 240


>gi|68067975|ref|XP_675907.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56495350|emb|CAI05586.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 188

 Score = 42.7 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPL-FPSLNISQAVLLMV 165
           ++   +FG E  G++ + I + + II  P       SLN+S +  +++
Sbjct: 73  KDTAFLFGNEGTGISEQIIKMCDQIIYIPQYGNGIASLNVSVSCAIIL 120


>gi|282864224|ref|ZP_06273280.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560711|gb|EFB66257.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 274

 Score = 42.7 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 18/137 (13%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            N+G   R      +    L+ PR   P   +A   S  +   +   R+  +  + +A L
Sbjct: 135 ANLGAAFRNAAALGV-DAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRL-ESWPDDLALL 192

Query: 85  HFIYATTA----RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                TTA     +R+     L  +             + + +IFG E  GLT + +A +
Sbjct: 193 GAAGFTTAALCLSDRSITLDALVARAH-----------EKLALIFGTEGDGLTAQALAAA 241

Query: 141 NAIISFPVNPLFPSLNI 157
           +A +  P++    SLN+
Sbjct: 242 DAHVRIPMDAGVDSLNV 258


>gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis
           AF2122/97]
 gi|81421359|sp|Q7TW55|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c
 gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis
           AF2122/97]
          Length = 402

 Score = 42.7 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 19/193 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 156 DQPPALLVALDNLSDPRNLGAIMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV--KEQN 184
            E  GL+       + ++S P+     SLN S A  +++           E      E +
Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAAIARQRRRPREPREQDAESH 321

Query: 185 TPATKGELLSFLD 197
             ++   +L  L 
Sbjct: 322 DLSSNHAILRLLA 334


>gi|320451443|ref|YP_004203539.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
           SA-01]
 gi|320151612|gb|ADW22990.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
           SA-01]
          Length = 238

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 49  RDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAP 104
           R    S  A  +SA A   +  V+V  NL  A+ ++     ++Y    R     + +   
Sbjct: 123 RSAPLSPLALKASAGAALKLPVVKV-KNLPRALEEVKQKGLWVYGLDVRGAKTPRELDFQ 181

Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +               + ++ G E  G+        + +   P+     SLN S A+ + 
Sbjct: 182 R--------------PLALVLGSEGEGMRRLVRESCDELFRIPMREEAESLNASVALGIA 227

Query: 165 VW 166
           ++
Sbjct: 228 LY 229


>gi|288906003|ref|YP_003431225.1| rRNA methylase [Streptococcus gallolyticus UCN34]
 gi|288732729|emb|CBI14303.1| putative rRNA methylase [Streptococcus gallolyticus UCN34]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 30/175 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P L +   G  ++L D Q   N+G + R      L    L++ +      +    S 
Sbjct: 92  PSLP-LADLKAGRYLVLEDVQDPGNVGTMIRTADAAGLDG-VLISEKSADIYNQKTLRSM 149

Query: 63  NAD---------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
                        V ++ +   NL         + ATT    +                +
Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLD------VPLIATTLSKESVD-------------YK 190

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            I    +  ++ G E  G++      ++ +    +     SLN++ A  +++++ 
Sbjct: 191 TIEHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|261839617|gb|ACX99382.1| 23S rRNA methyltransferase [Helicobacter pylori 52]
          Length = 227

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDMILSVKMRRDFDSLNVSVAAGIL 222


>gi|301096908|ref|XP_002897550.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107010|gb|EEY65062.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 1346

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 1283 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 1341


>gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 255

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           I +  + G+I G E  G++ E +A ++  +  P+     SLN++ A  ++++    
Sbjct: 200 IDAPASFGLIMGNEGNGMSRELLARTDQNLYIPIKGQAESLNVAVAAGVLMFGLYR 255


>gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC
           13032]
 gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
 gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium
           glutamicum ATCC 13032]
          Length = 313

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-ADCVI-----DS 70
           +IL +     N+G V R++  F    + +   R    +  A  +SA  A  V      + 
Sbjct: 165 VILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNM 224

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RV    ++                 N   V+          +      NV I+ G E  
Sbjct: 225 TRVVKEFQQ-----------------NGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGK 267

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G++       + I+S P      SLN S A  +++ E     
Sbjct: 268 GISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQR 309


>gi|158422502|ref|YP_001523794.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158329391|dbj|BAF86876.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 281

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 23/169 (13%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P  + +    V++L       N+G + R+   F +  +          +     S++
Sbjct: 119 PSPPLKKVAKSDLVLVLDQITDPHNVGAIVRSAAAFAVGAIVTTARHSPVATGVLAKSAS 178

Query: 63  NADCVIDSV--RVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                ++ V   + +NL  A+ +L      +                         E   
Sbjct: 179 GG---LEHVPFCLVTNLARALEELKASGMLVVGL--------------DSEGPADLEDTA 221

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
               + ++ G E  GL        + +    +     SLN+S A  L +
Sbjct: 222 MRPPMALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSL 270


>gi|148653655|ref|YP_001280748.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
 gi|148572739|gb|ABQ94798.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
          Length = 278

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 21/170 (12%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             L++      +IL D Q   N+G + R      +  +          S K   +   A 
Sbjct: 123 QALKSPITTDCLILNDVQDNGNVGTLLRTAAAVGIKTIICTKGSAQAWSPKTMRAGMGAQ 182

Query: 66  CVIDSVRVFSNLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +    ++  ++  E +A L   ++AT++                  +  +    + V 
Sbjct: 183 FGL---TIYEGIEADEVLAYLRLPVFATSS--------------HTDNIIYKQNLNRPVA 225

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + G E  G+ ++ + L+   ++ P      SLN++ A  L ++E +   
Sbjct: 226 WVMGHEGQGVCDDIMKLA-TPVALPQPNGQESLNVAIAGALCMYETLRQR 274


>gi|28378262|ref|NP_785154.1| rRNA methylase [Lactobacillus plantarum WCFS1]
 gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1]
 gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|28271097|emb|CAD64002.1| rRNA methylase [Lactobacillus plantarum WCFS1]
 gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1]
 gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 257

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           I +  + G+I G E  G++ E +A ++  +  P+     SLN++ A  ++++    
Sbjct: 202 IDAPASFGLIMGNEGNGMSRELLARTDQNLYIPIKGQAESLNVAVAAGVLMFGLYR 257


>gi|301096890|ref|XP_002897541.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107001|gb|EEY65053.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 647

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 584 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 642


>gi|332089404|gb|EGI94508.1| spoU rRNA Methylase family protein [Shigella boydii 3594-74]
          Length = 130

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 33/127 (25%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           I+L +P++  N G + R   N    +L ++ P      +K    +      +D       
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG-----LDYHEF--- 54

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV----------GIIFG 126
                         TA  R++        E    L      G              ++FG
Sbjct: 55  --------------TAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFG 100

Query: 127 RERWGLT 133
            E  GL 
Sbjct: 101 PETRGLP 107


>gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus epidermidis FRI909]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      L  L ++      P +     ++    +     +F ++   I 
Sbjct: 114 QDPGNLGTLIRTADAAGL-DLIVMEKGTADPFQDKVIRASQGS-IFHIPVIFDDINNYIH 171

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  +Y T               E A+  N+ + +  N  ++ G E  G+  + +  + 
Sbjct: 172 QFNGPVYGTA-------------LENAVSFND-VEAQANFALVLGNEGEGVNPDLLKETT 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             ++ P+     SLN++ A  +++++ 
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244


>gi|317012366|gb|ADU82974.1| RNA methyltransferase [Helicobacter pylori Lithuania75]
          Length = 227

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  +AI+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGIL 222


>gi|298736242|ref|YP_003728768.1| TrmH family RNA methyltransferase [Helicobacter pylori B8]
 gi|298355432|emb|CBI66304.1| RNA methyltransferase, TrmH family [Helicobacter pylori B8]
          Length = 227

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  +AI+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGIL 222


>gi|284928667|ref|YP_003421189.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
 gi|284809126|gb|ADB94831.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
          Length = 236

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 26/149 (17%)

Query: 7   QLQNSAKGPVII----LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           + +  +  PVII    +VDPQ   N+G + R         L +   R    +      +A
Sbjct: 77  KAKQESDQPVIIIADGIVDPQ---NLGAIIRTSEAMGCQGLIIPQRRAASITSSVAKVAA 133

Query: 63  NADCVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            A       RV  NL  A+  L     +IY T A    N  +                  
Sbjct: 134 GALEFFPIARVI-NLNRALETLKAEGFWIYGTVAEGGKNLPNFDF--------------S 178

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP 147
             +G++ G E  GL        + ++S P
Sbjct: 179 CAIGLVIGSEGNGLNLLTQRYCDELLSIP 207


>gi|254779454|ref|YP_003057559.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
 gi|254001365|emb|CAX29350.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
          Length = 227

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  +AI+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGIL 222


>gi|217032394|ref|ZP_03437889.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
 gi|216945961|gb|EEC24577.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
          Length = 179

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  +AI+S  +   F SLN+S A  ++
Sbjct: 129 KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGIL 174


>gi|210134755|ref|YP_002301194.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
 gi|210132723|gb|ACJ07714.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
          Length = 227

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  +AI+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGIL 222


>gi|208434474|ref|YP_002266140.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
 gi|208432403|gb|ACI27274.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
          Length = 218

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  +AI+S  +   F SLN+S A  ++
Sbjct: 168 KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGIL 213


>gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260202767|ref|ZP_05770258.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           K85]
 gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|254765090|sp|A1KPR5|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c
 gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
          Length = 322

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            E  GL+       + ++S P+     SLN S A  +++
Sbjct: 262 SEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|108562956|ref|YP_627272.1| hypothetical protein HPAG1_0531 [Helicobacter pylori HPAG1]
 gi|107836729|gb|ABF84598.1| 23S rRNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 227

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  +AI+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGIL 222


>gi|15611567|ref|NP_223218.1| hypothetical protein jhp0500 [Helicobacter pylori J99]
 gi|4155040|gb|AAD06078.1| putative [Helicobacter pylori J99]
          Length = 227

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  +AI+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGIL 222


>gi|302561652|ref|ZP_07313994.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302479270|gb|EFL42363.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 277

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADL 84
            N+G   R      +    L+ PR   P   +A   S  A   +   R+ S  ++A    
Sbjct: 141 ANLGAAFRNAAALGV-DAVLLTPRCADPLYRRAVKVSMGAVFHVPWTRLTSWPQDA---- 195

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAI 143
             I+    R      + L   E +I L E      + + ++ G E  GL+ + +  ++  
Sbjct: 196 -GIF----REHGFVTAALCLDEKSITLEELAARRHEKLVLMLGTEGDGLSADALRSADEW 250

Query: 144 ISFPVNPLFPSLNISQ 159
           +  P++    SLN++ 
Sbjct: 251 VRIPMSGGVDSLNVAA 266


>gi|295660999|ref|XP_002791055.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
 gi|226280982|gb|EEH36548.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
          Length = 623

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 50/222 (22%)

Query: 2   TPYAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARS 59
           +P A  L    + P  + L   +   N+G + R+ + F +    +V+ R   P S  A  
Sbjct: 403 SPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFGV-DAVIVSTRSSAPISAVAIK 461

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNF--------------------K 99
           +SA A    +++ + +       +      ++  N   F                    +
Sbjct: 462 ASAGAA---ENIPILTTT-----NPTLFVKSSHTNGWKFFAAEAPAAANASQQTLEAPTE 513

Query: 100 SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVN---------P 150
            VL+ +E +  LNE         ++ G E  GL       ++  +  P            
Sbjct: 514 QVLSRREVSTKLNE-----APCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRA 568

Query: 151 LFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
              SLN+S A  L+       + +    + K+ +TPA +  +
Sbjct: 569 GVDSLNVSVASALLC-----EAFLGDPSSNKQDSTPAEEALM 605


>gi|78187067|ref|YP_375110.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
 gi|78166969|gb|ABB24067.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
          Length = 182

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 63/171 (36%), Gaps = 22/171 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGE-NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           +   + + PV++L+       N+G + R      + ++ L       P ++   ++  AD
Sbjct: 21  EYPPTDRHPVVLLLHNIRSMWNVGSLFRTADCAGIEKILLSGYTATPPRKEISKTALGAD 80

Query: 66  ------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                  + D  R      E  A    ++       +   + L+  +             
Sbjct: 81  LSMPWEYIPDPHRAV---LEMKASGRKVFGLEITEGSRPYTSLSVVDFP----------- 126

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            + ++ G E  G+ +  + LS+ ++  P      SLN+S A  + ++E + 
Sbjct: 127 -LCLVLGNEVQGIDDSLLRLSDGVLEIPQYGTKHSLNVSVAAGVALFELVR 176


>gi|301096906|ref|XP_002897549.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107009|gb|EEY65061.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 705

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 642 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 700


>gi|301096904|ref|XP_002897548.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107008|gb|EEY65060.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 618 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 676


>gi|301096900|ref|XP_002897546.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107006|gb|EEY65058.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 618 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 676


>gi|301096892|ref|XP_002897542.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107002|gb|EEY65054.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 618 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 676


>gi|258648108|ref|ZP_05735577.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
 gi|260851979|gb|EEX71848.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
          Length = 249

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 26/174 (14%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANA 64
           P          + L   Q   N+G + R    F +    L +P      + K   ++  A
Sbjct: 92  PVPWQPTDELALALDGLQDPGNVGTIIRLADWFGIHN-ILCSPTTADAFAPKVVQATMGA 150

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I+    + +L EA+A L                +         + E+    + + II
Sbjct: 151 LGRIN--LHYVDLCEALAKL-----------PVETPIYGTFLDGPNIYEQSLDTKGL-II 196

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMEN 171
            G E  G++       +  +  P    FP       SLN++ A  ++  E    
Sbjct: 197 MGNEGQGISPAVERFVSKRLFIP---RFPLNATGSESLNVAMATAIVCAEFRRR 247


>gi|118592061|ref|ZP_01549455.1| tRNA/rRNA methyltransferase (SpoU) [Stappia aggregata IAM 12614]
 gi|118435357|gb|EAV42004.1| tRNA/rRNA methyltransferase (SpoU) [Stappia aggregata IAM 12614]
          Length = 233

 Score = 42.7 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               + G ER  L+ + +   + ++  P    F   N++ A  +++++        ++++
Sbjct: 148 QAAYVLGPERGSLSPQMLERCDHVVKIPT--KFCI-NVAMAGAIVMYDRHRALGRYADRS 204

Query: 180 VKEQNT 185
           +     
Sbjct: 205 ITAGGP 210


>gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 245

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 27/172 (15%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +  L  S  G  ++L D Q   N+G + R         + L +      ++K   S   +
Sbjct: 93  SQALPESLSGKYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGS 152

Query: 65  DC--------VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
                     +++ V           DL  + ATT                  V  + + 
Sbjct: 153 HFHLPIYRGPILEMVETCKK-----HDLT-VLATTLSE-------------VSVDYKAVK 193

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +  N  ++ G E  G++ E    ++ ++   +     SLN++ A  ++++  
Sbjct: 194 TDGNFALVMGNEGQGISKEMAESADQLVHINMPGQAESLNVAVAAGIIMFSL 245


>gi|309808734|ref|ZP_07702620.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308167970|gb|EFO70102.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 73

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
          ++L +P +  N G +AR          L L+ P      +K    +       D V++  
Sbjct: 5  VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRA--GLDYWDKVKINK 60

Query: 74 FSNLKE 79
            +L++
Sbjct: 61 HDSLED 66


>gi|301095544|ref|XP_002896872.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108622|gb|EEY66674.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 618 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 676


>gi|183603699|ref|ZP_02718929.2| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|221232698|ref|YP_002511852.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|237650991|ref|ZP_04525243.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974]
 gi|298230170|ref|ZP_06963851.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254776|ref|ZP_06978362.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503744|ref|YP_003725684.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|183575321|gb|EDT95849.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|220675160|emb|CAR69744.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|298239339|gb|ADI70470.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|169833146|ref|YP_001695327.1| rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995648|gb|ACA36260.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|168487111|ref|ZP_02711619.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569960|gb|EDT90488.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC1087-00]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|148989973|ref|ZP_01821248.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924633|gb|EDK75719.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP6-BS73]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|149007448|ref|ZP_01831091.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|225861791|ref|YP_002743300.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147761020|gb|EDK67989.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|225727319|gb|ACO23170.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|332071951|gb|EGI82439.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17545]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|111224586|ref|YP_715380.1| putative 23S rRNA methylase [Frankia alni ACN14a]
 gi|111152118|emb|CAJ63846.1| putative 23S RRNA methylase [Frankia alni ACN14a]
          Length = 283

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 73  VFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           V     E +  L      I AT+   R +  + +   E                 +FG E
Sbjct: 173 VEPTFTEVVTGLRARGCRIVATSGSARRDLDTAVDAGEL----------DGPTAWLFGNE 222

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GL    +A ++A +  PV     SLN++ A  L ++      
Sbjct: 223 AHGLDPAGLAAADAALRVPVYGQAESLNLAVASALCLYASARAQ 266


>gi|15901796|ref|NP_346400.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|111658860|ref|ZP_01409481.1| hypothetical protein SpneT_02000031 [Streptococcus pneumoniae
           TIGR4]
 gi|14973480|gb|AAK76040.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|301802651|emb|CBW35417.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           INV200]
          Length = 246

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|218676911|ref|YP_002395730.1| rRNA methylase [Vibrio splendidus LGP32]
 gi|218325179|emb|CAV27085.1| rRNA methylase [Vibrio splendidus LGP32]
          Length = 244

 Score = 42.7 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 24/166 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A G +I L       N+G + R    + +  +   +      + K  S++  +     
Sbjct: 97  PKATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMGS---FG 153

Query: 70  SVRVFSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIF 125
            V V    L E +   +                  P   A +  E +   +      ++ 
Sbjct: 154 RVHVSQTDLPEYLEQANL-----------------PVYGAFLEGESVHKTEFTANGILLM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  G+           I+ P      SLN++ A  +++      
Sbjct: 197 GSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|328473290|gb|EGF44138.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus 10329]
          Length = 244

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  AKG +I L       N+G + R    + +  +          + K  S++  +   +
Sbjct: 96  EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRV 155

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
               V  +L   +A+ +               V         +++  FS + + ++ G E
Sbjct: 156 QVSLV--DLPSYLAEANL-------------PVYGAFLEGESVHKTDFSAEGI-LLMGSE 199

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+  E        I+ P      SLN++ A  +++      
Sbjct: 200 SHGVREEASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|301765370|ref|XP_002918107.1| PREDICTED: RNA methyltransferase-like protein 1-like [Ailuropoda
           melanoleuca]
 gi|281342377|gb|EFB17961.1| hypothetical protein PANDA_006496 [Ailuropoda melanoleuca]
          Length = 423

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E      V
Sbjct: 352 APAAVVIGGETHGVSLESLELAESTGGKRLLIPVMPGVDSLNSAMAASILLFEGKRQLRV 411

Query: 175 SSEKNVKE 182
            +E++ ++
Sbjct: 412 RAEQSSRD 419


>gi|225859729|ref|YP_002741239.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
 gi|225720207|gb|ACO16061.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
 gi|301794916|emb|CBW37377.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|332072159|gb|EGI82645.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41301]
          Length = 246

 Score = 42.4 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|218899716|ref|YP_002448127.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
 gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
 gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
 gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
          Length = 265

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +  ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPAG-SFALIVGNEGNGVRQEILTKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|86145741|ref|ZP_01064070.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|85836440|gb|EAQ54569.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
          Length = 244

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 24/166 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A G +I L       N+G + R    + +  +   +      + K  S++  +     
Sbjct: 97  PKATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMGS---FG 153

Query: 70  SVRVFSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIF 125
            V V    L E +   +                  P   A +  E +   +      ++ 
Sbjct: 154 RVHVSQTDLPEYLEQANL-----------------PVYGAFLEGESVHKTEFTANGILLM 196

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G E  G+           I+ P      SLN++ A  +++      
Sbjct: 197 GSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|307942542|ref|ZP_07657890.1| RNA methyltransferase [Roseibium sp. TrichSKD4]
 gi|307774181|gb|EFO33394.1| RNA methyltransferase [Roseibium sp. TrichSKD4]
          Length = 181

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               + G ER  L+ + +   + +I  P    F   N++ A  +++++        +E++
Sbjct: 96  QAAYVLGPERGSLSPQMLDRCDHVIKIPT--KFCI-NVAMAGAIVMYDRHRALGRYAERS 152

Query: 180 VKEQNT 185
           +     
Sbjct: 153 ITAGGP 158


>gi|238062522|ref|ZP_04607231.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237884333|gb|EEP73161.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 210

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 15/156 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    F   ++ +V  R  W    A  +          VR    ++E   
Sbjct: 70  QHDLNIGTVVRNANAFLAAEVHIVG-RRRWNRRGAMVT-----DRYQHVRHHETIEE--- 120

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                +A  A  RN     +     +  L E     +   ++FG+E  GL++   A  + 
Sbjct: 121 -----FAAWAAGRNLPVVGIDNLPGSRPL-ETTSLPRRCALLFGQEGPGLSDAARAACDQ 174

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           + S        S+N   A  + +   +         
Sbjct: 175 LFSIAQYGSTRSINAGVASGIAMHAWIRAHAGPPPA 210


>gi|209550362|ref|YP_002282279.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536118|gb|ACI56053.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 153

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L  P +  N G + R         + L+ P     S++    S      I +  +  ++ 
Sbjct: 8   LYQPDIPGNTGTILRLAACLGFA-VDLIEPAGFDVSDRNLKRS--GMDYIAAAALTRHVN 64

Query: 79  ----EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
               EA        ATT R     + +LA  +AA    +  F   ++ ++FGRE  G+ +
Sbjct: 65  WDRFEAWR------ATTGR-----RLILASTKAADRYTDLAFRSDDI-LLFGRESAGVPD 112

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
                ++A I  P+     S+N++ +  ++V E M  ++
Sbjct: 113 HVHERADARILIPMVDGQRSINVAVSAAMIVGEAMRQTV 151


>gi|28897728|ref|NP_797333.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260363841|ref|ZP_05776596.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
 gi|260876899|ref|ZP_05889254.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           AN-5034]
 gi|260897959|ref|ZP_05906455.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902161|ref|ZP_05910556.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
 gi|28805941|dbj|BAC59217.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085459|gb|EFO35154.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093903|gb|EFO43598.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           AN-5034]
 gi|308108291|gb|EFO45831.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
 gi|308113897|gb|EFO51437.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
          Length = 244

 Score = 42.4 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  AKG +I L       N+G + R    + +  +          + K  S++  +   +
Sbjct: 96  EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRV 155

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
               V  +L   +A+ +               V         +++  FS + + ++ G E
Sbjct: 156 QVSLV--DLPSYLAEANL-------------PVYGAFLEGESVHKTDFSAEGI-LLMGSE 199

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+  E        I+ P      SLN++ A  +++      
Sbjct: 200 SHGVREEASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|325954299|ref|YP_004237959.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323436917|gb|ADX67381.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 243

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
             KG  ++L       N+G + R    F +TQ+          + K   S+  +   +  
Sbjct: 95  PVKGLTLVLDTINDPGNLGTIIRLADWFGITQIICSKESVDVYNPKVIMSTMGSFARV-- 152

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
              ++++ E I +  +              +L        + +  F  +N  ++ G E  
Sbjct: 153 AVHYTDILEVIENYKY-------------PILGAFMEGESIFQFPFP-ENAMLVMGSEAH 198

Query: 131 GLTNEEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMENSI 173
           G++          IS P       SLN++ A  ++V E     +
Sbjct: 199 GISKAVEDKITNKISIPAIGKQTESLNVAMATSIIVGEVFSQKM 242


>gi|282859569|ref|ZP_06268674.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
 gi|282587797|gb|EFB92997.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
          Length = 252

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 40/165 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRV---FSNL 77
           Q   N+G + R    F +  +   +P   D W + K   ++  +       RV   +++L
Sbjct: 112 QDPGNLGTIIRIADWFGIENIY-CSPNTVDCW-NPKVVQATMGSI-----ARVNIHYTSL 164

Query: 78  KEAIADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            E +  L     IYAT     N ++  L                +   I+ G E  G++ 
Sbjct: 165 LEFVDSLPLNYPIYATLLDGNNIYQQDLT---------------EYGVIVMGNEGNGIST 209

Query: 135 EEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
           E     N  +  P    +P       SLN++ A  ++  E     
Sbjct: 210 ELRQKINHKLYIP---NYPADRSSAESLNVAIATAIVCAEFRRLQ 251


>gi|90407127|ref|ZP_01215315.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
 gi|90311703|gb|EAS39800.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
          Length = 247

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 22/158 (13%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSAN--ADCV 67
           +++  +++L       N+G + R    + +  +   +P    + + K  ++S    A   
Sbjct: 104 ASQELILVLDQVGDPGNLGTIIRVADWYGVKNIV-CSPDCADFYNPKVIAASMGSFARIN 162

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +    +   L  AI +               K +         L++     ++  I+ G 
Sbjct: 163 VSHTPLVEYL--AIQE---------------KPIFGAYLEGSNLHQCALP-KSAFIVMGS 204

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E  G+++E   L +  I+ P      SLN++ A  +++
Sbjct: 205 ESHGISDELEHLISDKITIPNFGAAESLNVAMATGIIL 242


>gi|301095552|ref|XP_002896876.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108626|gb|EEY66678.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 664

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 601 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 659


>gi|157962405|ref|YP_001502439.1| tRNA/rRNA methyltransferase SpoU [Shewanella pealeana ATCC 700345]
 gi|157847405|gb|ABV87904.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella pealeana ATCC
           700345]
          Length = 174

 Score = 42.4 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 65/165 (39%), Gaps = 39/165 (23%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLT------------QLRLVNPRDGWPSEKARSSSA 62
             I LV+P+   N+G + RA+                  +L   N    + ++  R+SS+
Sbjct: 7   VAIGLVNPKSPTNVGGIMRAV---GCYSADAVFYTGKRYELAATNGTAQYNTDTKRASSS 63

Query: 63  NADCVIDSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                +       +L +AI  D+  +              +   E AI L E     + +
Sbjct: 64  ---IPLKK---VESLLDAIEPDVKVVC-------------VDLVEGAIPLPEFEHPDKAI 104

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             IFG E   ++ + I  ++A++  P       +N++ +V ++++
Sbjct: 105 -YIFGPEDGTISQQVINGADAVVYVPT---VGCMNLAASVNVLLY 145


>gi|42523586|ref|NP_968966.1| hypothetical protein Bd2118 [Bdellovibrio bacteriovorus HD100]
 gi|39575792|emb|CAE79959.1| hypothetical protein Bd2118 [Bdellovibrio bacteriovorus HD100]
          Length = 194

 Score = 42.4 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 23/153 (15%)

Query: 31  VARAMWNFNLTQLRLVNPR-----------DGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           +ARA   F + +  +++P            D W + +    +      + +V+   ++++
Sbjct: 40  IARAATVFGVEKYYIIHPMKEQLMFVDRVLDHWRTGQGSKFNPMRKTALGNVKAVESVEK 99

Query: 80  AIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           A  D +       ATTAR              A + NE   + + V ++FG   +GLT +
Sbjct: 100 AFEDWNVPEALTIATTARTEWAKHKY----SFAELRNEMHVAKKPVFMLFGT-GFGLTED 154

Query: 136 EIALSNAII-SFPVNP--LFPSLNISQAVLLMV 165
            I  S+ ++ S    P   +  L++  AV + +
Sbjct: 155 LIRSSSGVLESIRGAPPKDYRHLSVRSAVSICL 187


>gi|254874998|ref|ZP_05247708.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254840997|gb|EET19433.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 213

 Score = 42.4 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 4   YAPQLQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             P+L+  +     ILV    Q   NIG + R      L ++ L+N      + KA  + 
Sbjct: 91  EKPKLEQLSFDDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAG 150

Query: 62  ANAD 65
             A 
Sbjct: 151 MGAQ 154


>gi|149003632|ref|ZP_01828497.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758364|gb|EDK65364.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
          Length = 236

 Score = 42.4 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 101 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 157

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 158 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 195

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 196 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 235


>gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
 gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
          Length = 246

 Score = 42.4 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 18/161 (11%)

Query: 10  NSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           N  +   ++L+   Q   N+G + R      +  L ++      P +     ++    + 
Sbjct: 100 NEIEALQVLLIDRIQDPGNLGTLIRTADAAGI-DLIVMEKGTADPYQDKVMRASQGS-IF 157

Query: 69  DSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
               V  +L   I +    +Y T               E A+   E I S     ++ G 
Sbjct: 158 HIPVVIKDLATYITEFEGPVYGTA-------------LENAVSFKE-IESQSQFALLLGN 203

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           E  G+  + +  +   +  P+     SLN++ A  +++++ 
Sbjct: 204 EGEGVNKDLLQRTTKNLIIPIYGKAESLNVAIAGSILLYQL 244


>gi|301095550|ref|XP_002896875.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108625|gb|EEY66677.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 486

 Score = 42.4 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 423 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 481


>gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228]
          Length = 246

 Score = 42.4 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      L  L ++      P +     ++    +     +F ++   I 
Sbjct: 114 QDPGNLGTLIRTADAAGL-DLIVMEKGTADPFQDKVIRASQGS-IFHIPVIFDDINNYIH 171

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  +Y T               E A+  N+ I +  N  +I G E  G+  + +  + 
Sbjct: 172 QFNGPVYGTA-------------LENAVSFND-IEAQANFALILGNEGEGVNPDLLKETT 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             ++ P+     SLN++ A  +++++ 
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244


>gi|170743299|ref|YP_001771954.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168197573|gb|ACA19520.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 269

 Score = 42.4 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 12/150 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F    + L          KA   SA     +   R+     EA+     
Sbjct: 132 NVGGLFRNAAAFGADAVLLDAATCDPLYRKAIRVSAGTCLTLPFARLPD--GEAL----- 184

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
             A   R+       L P         ++       ++ G E  GL +  +A +   +  
Sbjct: 185 -LALCERH-GIVPLALTP--GGGEEIAQLPPLPRAMLLLGTEGTGLPDALMARARR-VRI 239

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + P   SLN++ A  + +       +   
Sbjct: 240 AMAPGVDSLNVAAAGAVALHRIAAPRLSGP 269


>gi|163803682|ref|ZP_02197544.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159172521|gb|EDP57384.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 244

 Score = 42.4 bits (99), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 23/172 (13%)

Query: 4   YAPQLQ-NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
             P+L+   AKG +I L       N+G + R    + +  +          + K  S++ 
Sbjct: 90  EIPELKVPEAKGLMIALDGVSDPGNLGTIIRVADWYGIQHIIASTDCADPYNPKTISATM 149

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            +   +    V  +L   + D +                  P   A +  E +   +   
Sbjct: 150 GSFGRVQVSLV--DLPSYLEDANL-----------------PVYGAFLEGESVHKTEFSA 190

Query: 123 ---IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              ++ G E  G+           I+ P      SLN++ A  +++      
Sbjct: 191 DGILLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
 gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
          Length = 265

 Score = 42.4 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   +  V+   NL+E + 
Sbjct: 125 QDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK--GNLEEWVD 182

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            L           NN        E  +   E   +G +  +I G E  G+  E +  ++ 
Sbjct: 183 KL---------KENNVPVYGTALENGVPYGEVTPTG-SFALIVGNEGNGVRQEILTKTDQ 232

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +  P+     SLN++ A  ++ +
Sbjct: 233 NLYIPIYGGAESLNVAVAAGILTY 256


>gi|327389138|gb|EGE87484.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA04375]
          Length = 212

 Score = 42.4 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 77  QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 133

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 134 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 171

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 172 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 211


>gi|224369437|ref|YP_002603601.1| rRNA methylase-family protein [Desulfobacterium autotrophicum HRM2]
 gi|223692154|gb|ACN15437.1| rRNA methylase-family protein [Desulfobacterium autotrophicum HRM2]
          Length = 161

 Score = 42.4 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            V  +R         + G E+ GL+   +   + ++  P      SLN++ A  L+++
Sbjct: 93  AVALDRFDHPSRAVYLLGNEQLGLSPGVMEKCHRLVKLPGA---FSLNVAVAGSLVMY 147


>gi|310658445|ref|YP_003936166.1| RNA methyltransferase, trmh family [Clostridium sticklandii DSM
           519]
 gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [Clostridium sticklandii]
          Length = 261

 Score = 42.4 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              ++IL   Q   N+G + R      ++ +          S K   S+  +   +  + 
Sbjct: 111 NNDILILDKIQDPGNLGTILRTADAAGISTVICTKGTTDIYSSKVVRSAMGSLMHL-KIL 169

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              + +     L+ +       +N++K + +  E A+  N        V I+ G E  G+
Sbjct: 170 FIDDYES----LNIL------KKNDYKIISSSLENALDYNVLSTIQSKVAIVLGNEANGI 219

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            ++ + LS+  +  P+     SLN+  A  +++++  E ++
Sbjct: 220 DDKLLNLSDIKVKIPLYGAAESLNVGIAGGILMYKLKERTL 260


>gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 250

 Score = 42.4 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 59/157 (37%), Gaps = 19/157 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---F 74
           IL       N+G   R+ + F +  + +   R    S   +  ++ +  +I  + V    
Sbjct: 99  ILDGIMDPRNLGSCIRSAYIFGVQAVIIRKNRSAKISSAVKKVASGSLDLIPLIYVTNLV 158

Query: 75  SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +   +   +  I  T+             K    + N+++   Q++ ++ G E  G++
Sbjct: 159 RTIN-LLKKYNIQIIGTSR------------KAQLDICNKKLK--QSIAVVMGSENLGIS 203

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                  + I++ P       LNIS A  + ++E + 
Sbjct: 204 RLVKENCDNILNIPTVKNNLPLNISVATGICIFEIIR 240


>gi|269961010|ref|ZP_06175379.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834229|gb|EEZ88319.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 285

 Score = 42.4 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             AKG +I L       N+G + R    + +  +          + K  S++  +   + 
Sbjct: 138 PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQ 197

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V  +L   + D +               V         +++  FS + + ++ G E 
Sbjct: 198 VSLV--DLPSYLEDANL-------------PVYGAFLEGESVHKTEFSAEGI-LLMGSES 241

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+           I+ P      SLN++ A  +++      
Sbjct: 242 HGVREAASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 283


>gi|83945697|ref|ZP_00958042.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83850898|gb|EAP88758.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 173

 Score = 42.4 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
              + G+ER  L+ E +     ++  P    F   N+S A  + +++         E+ V
Sbjct: 97  AAYVLGKERGDLSPEMLERCAHVVKIPT--KFCV-NLSVAAAIALYDRTLCLGGYPERPV 153

Query: 181 KEQNTPATKGEL 192
                   K  +
Sbjct: 154 MPGGPLEDKQHV 165


>gi|317121670|ref|YP_004101673.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
 gi|315591650|gb|ADU50946.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
          Length = 273

 Score = 42.4 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 26/54 (48%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++ G E  G++ E    +   ++ P+     SLN++ A  ++++E    +  + 
Sbjct: 220 LVVGNEGAGVSPEVQRYATGRVAIPLAGGIGSLNVAMAGCILLYEAARQAATAP 273


>gi|307707580|ref|ZP_07644061.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
 gi|307616293|gb|EFN95485.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
          Length = 246

 Score = 42.4 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         S+ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +      EA   +  + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 KETK------EA--GIS-VLATT-----LSKDSVDYRELPPI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G+++     ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISSLMAESADQLVHISMKGKAESLNVAVAAGILIFHL 245


>gi|306832022|ref|ZP_07465177.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304425948|gb|EFM29065.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 246

 Score = 42.4 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 30/175 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P L +   G  ++L D Q   N+G + R      L    L++ +      +    S 
Sbjct: 92  PSLP-LADLKAGRYLVLEDVQDPGNVGTMIRTADAAGLDG-VLISEKSADIYNQKTLRSM 149

Query: 63  NAD---------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
                        V ++ +   NL         + ATT    +                +
Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLD------VPLIATTLSKESVD-------------YK 190

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            +    +  ++ G E  G++      ++ +    +     SLN++ A  +++++ 
Sbjct: 191 TVEHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 268

 Score = 42.4 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 15/168 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P     A   ++ L       N+G + R    F +T +                 + 
Sbjct: 110 PVPPIEDLPADAVLLALDQITDPHNVGAIVRTAAAFAVTAIV---TTARHSPAATGVLAK 166

Query: 63  NADCVIDSV--RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +A   ++ V      NL EA+           R      + +     A V    +   + 
Sbjct: 167 SASGGLEHVPFITVRNLAEAL----------IRFGEQGFTRIGLDSEAPVPLSEVTPTRP 216

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + I+ G E  GL        + +          SLN+S A  + ++  
Sbjct: 217 LVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLYAL 264


>gi|170727353|ref|YP_001761379.1| tRNA/rRNA methyltransferase SpoU [Shewanella woodyi ATCC 51908]
 gi|169812700|gb|ACA87284.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella woodyi ATCC 51908]
          Length = 177

 Score = 42.4 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 49/166 (29%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQ----LRLVNPRDGWPSEKARSSSA------------ 62
           LV+P+   N+G + RA       Q    L          + K    +A            
Sbjct: 13  LVNPKSPTNVGGIMRAA---GCYQADAVLY---------TGKRYELAARNGNAQYNTDTK 60

Query: 63  -NADCVIDSVRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
                +        +L  A + D+  +              +     AI L E +   + 
Sbjct: 61  RAGQHIPLQA--VESLLAAKVDDVKLVC-------------VDLVVGAISLPEFVHPDKA 105

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +  +FG E   +  E I  ++A++  P       +N++ +V ++++
Sbjct: 106 L-YVFGPEDGTIGQEIIDKADAVVYVPT---VGCMNLAASVNVLLY 147


>gi|323453231|gb|EGB09103.1| hypothetical protein AURANDRAFT_25148 [Aureococcus anophagefferens]
          Length = 155

 Score = 42.4 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 32/143 (22%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+  + R    F   +L L + R    +++ ++ +  A+  I +        EA+A    
Sbjct: 13  NLAGLCRTAEVFACEKLVLPDDRCA-RTKEFKAIAVTAERWIAT--------EAVA---- 59

Query: 87  IYATTARNRNNFKSVLA--PKEAAIVLNERIFSGQNVG----------IIFGRERWGLTN 134
                   R+    +L    +  A+V  E+  +  ++           ++ GRE+ G+  
Sbjct: 60  -------PRDLRPWLLGLKARGYAVVALEQATNSTSLAGDAELPSPAVLLLGREKEGVPG 112

Query: 135 EEIALSNAIISFPVNPLFPSLNI 157
           + + L +  +  P   +  SLN+
Sbjct: 113 DLMDLCDVCVEIPQLGVVRSLNV 135


>gi|219685096|ref|ZP_03539916.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
           Far04]
 gi|219673192|gb|EED30211.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
           Far04]
          Length = 246

 Score = 42.4 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVTN-- 157

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              I +  +        ++ F  + A       +N+   + + + +I G E  G+     
Sbjct: 158 ---INNTIYSL-----KKHGFW-IYAGDIKGQDINKIKINDKKIALILGNEGKGVHKLIK 208

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             S+ +I  P +    SLN+S +  ++++E    
Sbjct: 209 ENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|219684256|ref|ZP_03539200.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
 gi|219672245|gb|EED29298.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
          Length = 246

 Score = 42.4 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVTN-- 157

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              I +  +        ++ F  + A       +N+   + + + +I G E  G+     
Sbjct: 158 ---INNTIYSL-----KKHGFW-IYAGDIKGQDINKIKINDKKIALILGNEGKGVHKLIK 208

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             S+ +I  P +    SLN+S +  ++++E    
Sbjct: 209 ENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|91784104|ref|YP_559310.1| putative RNA methylase [Burkholderia xenovorans LB400]
 gi|91688058|gb|ABE31258.1| Putative RNA methylase [Burkholderia xenovorans LB400]
          Length = 275

 Score = 42.4 bits (99), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 18/154 (11%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSAN 63
           A  L +      ++L   Q   N+G + R+     + Q     P   +  S K   S   
Sbjct: 118 ATPLPDEVAQTCLVLDGVQDAGNVGSILRSAAAAGIQQ-VFCAPGTAYAWSSKVLRSGMG 176

Query: 64  ADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
           A  ++   ++  +++ +A+                   ++                  + 
Sbjct: 177 AHFLL---QIHEDVEAQAL------------IERLAVPIVITDSHGAEAIYDCDLSGPLA 221

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
            +FG E  G++       +  ++ P      SLN
Sbjct: 222 WVFGNEGAGVSQIWRDAVSLRVTIPQPGGMESLN 255


>gi|301095558|ref|XP_002896879.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108629|gb|EEY66681.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 199

 Score = 42.4 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           + + ++ GRE+ G+  E + L +  +  P   L  SLN+  +  L++WE  +  ++S  
Sbjct: 136 RKMVLVLGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQLMSGA 194


>gi|328791993|ref|XP_001123107.2| PREDICTED: hypothetical protein LOC727398 [Apis mellifera]
          Length = 1348

 Score = 42.4 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
            N+G +AR    FN+ +L + N  +    ++ ++ S +A+  I    +            +
Sbjct: 1209 NLGGLARTCEIFNVKELVIAN-LNQVKDKEFQNLSVSAENWITITEIKP-----YELCKY 1262

Query: 87   IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI-IFGRERWGLTNEEIALSNAIIS 145
            +       ++   S++  ++ A  +N      +   I + G E+ G+    I L +  I 
Sbjct: 1263 LL----DKKDMGWSLVGVEQTANSINLLNMKFEKKTILVLGNEKNGIPANLIPLFDTCIE 1318

Query: 146  FPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             P   +  SLN+  +  + +W+  +  I++
Sbjct: 1319 IPQAGVIRSLNVHVSGAICIWQYAKQHILT 1348


>gi|170751018|ref|YP_001757278.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657540|gb|ACB26595.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
          Length = 176

 Score = 42.4 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 25/160 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV--FSN 76
           L  P + +N G + R      L  + +V P     S++    S      +D V +    +
Sbjct: 33  LYQPDIPQNTGTMLRMAACLGLA-VEIVEPAGFDVSDRHLRRS--GLDYLDHVAITRHRS 89

Query: 77  LKEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                A      +  + ATTA           P +                ++ GRE  G
Sbjct: 90  FAAFAAWRAEAGIRLVLATTAGAVPYTDFAFRPDDC---------------LMVGRESAG 134

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     A ++A I  P+ P   SLN++ A  ++  E +  
Sbjct: 135 VPEAVHAAADARIVVPIRPGLRSLNVAVAAAMIAGEALRQ 174


>gi|326392744|ref|ZP_08214028.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
          ethanolicus JW 200]
 gi|325991214|gb|EGD49922.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
          ethanolicus JW 200]
          Length = 43

 Score = 42.4 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVN 47
          ++LV+P++ +N G +AR       ++L LVN
Sbjct: 5  VVLVEPEIPQNTGNIARTCVLTG-SRLHLVN 34


>gi|254714766|ref|ZP_05176577.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
 gi|254717827|ref|ZP_05179638.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
          Length = 159

 Score = 42.4 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            + L  P +  N G + R  A   F +    L+ P     S++    +      ++   +
Sbjct: 4   RVALYQPDIPGNTGTILRMAACLGFAVD---LIEPAGFDISDRTLKRA--GMDYLEQAAL 58

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +      D        A  +N  + ++     A +        +N  ++FGRE  G+ 
Sbjct: 59  TRHPDWNRFD--------AWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVP 110

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                 ++  +  P+     SLN++ +V +   E +  
Sbjct: 111 EAIHDNADERLLIPMVRSARSLNLAVSVAMTTGEALRQ 148


>gi|90578908|ref|ZP_01234718.1| 23S rRNA methyltransferase [Vibrio angustum S14]
 gi|90439741|gb|EAS64922.1| 23S rRNA methyltransferase [Vibrio angustum S14]
          Length = 170

 Score = 42.4 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              +I L +P+   N+G V RA       Q   V    G   +KA     +   ++ ++ 
Sbjct: 4   TSVIIGLSNPKSPTNVGAVLRAA---GCYQADAV-IYTGTRYDKAAKFQTDTKQMLQTIP 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +   ++  + DL            + K V         L       +    IFG E   +
Sbjct: 60  LTG-VESMLDDL----------PEDMKVVCVDFAEGATLLPHFTHPEKAIYIFGPEDGSI 108

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +    ++ ++  P       +N++ +V ++++
Sbjct: 109 AQDVADKADHVVYVPT---VGCMNLAASVNVVLY 139


>gi|330844482|ref|XP_003294153.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
 gi|325075433|gb|EGC29321.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
          Length = 224

 Score = 42.4 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 18/178 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P+            I+L +    +N+G + R+   FN+  + + +      +  A   
Sbjct: 55  LKPFKANKNTKRYPLWIVLDELWDPQNVGTIIRSCSFFNVDGIVISDKCSNPITPTASKC 114

Query: 61  SANADCVIDSVRVFSNLKEAIADLHF--------IYATTARNRNNFKSVLAPKEAAIVLN 112
           S+ A   +++  V  +  E+I             I AT+     +  S       A    
Sbjct: 115 SSGA---VENYLVHKS--ESINGFLLSSKKNGWNIVATS----VDDNSSEDSSSPANYNI 165

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECM 169
             +   Q   +I G E +G+    I   +  I     N    SLN+S +  +++   +
Sbjct: 166 TDVKLDQPTILILGNEGFGVHKSIINQCDKTIRISGGNKKIDSLNVSVSTGILIHSLL 223


>gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group]
          Length = 427

 Score = 42.4 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 45/196 (22%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P   +  K PV I L +    +N+G + R+ + F    + L        S     +SA +
Sbjct: 227 PVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGS 286

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNVG 122
             +I+           +     +    + +  N   VL       AI L+E +  G+   
Sbjct: 287 LELIE-----------LLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPLSE-VVPGEPTI 334

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN------------------PLFP----------- 153
           ++ G E  GL          ++  P N                    +            
Sbjct: 335 LVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGADTDTDGGEEGDNYSGNQDMKSFLAV 394

Query: 154 -SLNISQAVLLMVWEC 168
            SLN+S A  ++++  
Sbjct: 395 ESLNVSVAAGVLLYHL 410


>gi|325695046|gb|EGD36949.1| SpoU rRNA methylase [Streptococcus sanguinis SK150]
          Length = 246

 Score = 42.4 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 28/56 (50%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            + S ++  ++ G E  G++ E  A ++ ++   +     SLN++ A  ++++   
Sbjct: 191 EVDSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHLR 246


>gi|119470949|ref|ZP_01613533.1| putative cold-shock RNA methyltransferase [Alteromonadales
           bacterium TW-7]
 gi|119445971|gb|EAW27251.1| putative cold-shock RNA methyltransferase [Alteromonadales
           bacterium TW-7]
          Length = 172

 Score = 42.4 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 56/154 (36%), Gaps = 30/154 (19%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L++P+   N+G V RA                 + +++   +    +  +++ +  ++ K
Sbjct: 10  LINPKSPTNVGGVLRA--------------AGCYDAKQVYFT---GNRYLNAQKFHTDTK 52

Query: 79  EAIADLHFIYATTARNRNNFKS------VLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             +  +     T+  +    K       V+   E A  L E     +N   + G E   +
Sbjct: 53  NVVERIPL---TSTDSLEKVKPEGATVVVVELIEGATPLPE-FKHPENAFYVLGPEDGSV 108

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             + +   + ++  P       +N++    ++++
Sbjct: 109 PKDVLKWCDEVVYIPT---IGCMNLAATCNVVLY 139


>gi|319407391|emb|CBI81042.1| tRNA/rRNA metyltransferase [Bartonella sp. 1-1C]
          Length = 272

 Score = 42.4 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 17/158 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
           +II+       N+G + R+   F    +   N      S     +++ A  +I+ + V  
Sbjct: 125 IIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITVRN 184

Query: 74  -FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            F  L+E +  ++FI      +         P E A+        G  + +I G E  GL
Sbjct: 185 LFKTLQE-LHQMNFI------SFGLDSEGKFPLETALK-------GTKISLILGAEGKGL 230

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             +    + ++    +     SLN+S A  + ++   +
Sbjct: 231 RQKTRENAYSLARLDLPGDIKSLNVSNAAAIALYAVHK 268


>gi|297564710|ref|YP_003683682.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
           DSM 9946]
 gi|296849159|gb|ADH62174.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
           DSM 9946]
          Length = 237

 Score = 42.4 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           + + I+ G E  G+        +     P+ P   SLN S A+ + +++  
Sbjct: 182 RPLAIVIGSEGEGMRRLVEQRCDETARIPLGPGAESLNASVALAIFLYQAR 232


>gi|315054983|ref|XP_003176866.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
 gi|311338712|gb|EFQ97914.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
          Length = 565

 Score = 42.4 bits (99), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 25/183 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82
             N+G + R+ + F    +   +      S     ++A A   I   SVR  S    A  
Sbjct: 381 PGNLGAIFRSAYWFGADAIVFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQ 440

Query: 83  DLHFIY-------ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
              + +       AT A +      V      ++       +     ++ G E  GL  +
Sbjct: 441 TNGWKFFAADAPDATLANDYTRKIPV----TKSLDSLSSELTKAPCVLMLGGEGSGLQQK 496

Query: 136 EIALSNAIISFPVN---------PLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQN 184
               ++  ++ P               SLN+S A  L+  E         S  +     +
Sbjct: 497 IKNRADMFVTIPGAYSDNIRDDTAGVSSLNVSVASALLC-EAFLSRRPASSVVETHNASD 555

Query: 185 TPA 187
           TPA
Sbjct: 556 TPA 558


>gi|225552336|ref|ZP_03773276.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
 gi|225371334|gb|EEH00764.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
          Length = 246

 Score = 42.0 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKARSSSANADCVIDSVRVFS-- 75
           L + +  +N G + R    F++  L +    R    +     +S+ A   +  + V +  
Sbjct: 101 LDEIEDPQNFGAILRTAEQFSI-DLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNIN 159

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N    + +  F              + A       +N+   + + + +I G E  G+   
Sbjct: 160 NTINLLKNYGF-------------WIYAGDIKGQDINKIKINDKKIALILGNEGKGVHKL 206

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               S+ +I  P +    SLN+S +  ++++E    
Sbjct: 207 IKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQ 242


>gi|332827938|gb|EGK00660.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 252

 Score = 42.0 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 31/180 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P+  +     V+ L   Q   N+G + R    + +  +   +      + K   ++ 
Sbjct: 91  PKHPEAIDINNQLVLALDGIQDPGNLGTIVRLADWYGIKHIFCTHDTADIYNPKVVQATM 150

Query: 63  NADCVIDSVRVFS-NLKEAIADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A   +  V +   +L   + +     +Y T    +N ++  + P               
Sbjct: 151 GA---LARVTIHHVDLAGFLDNNKHIPVYGTLLDGKNMYEQDITP--------------- 192

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
           +  I+ G E  G+  E        +  P    +P       SLN++ A  ++  E    S
Sbjct: 193 HGIIVMGNEGNGIRPEIEKRITKKLYIP---NYPEGNTTSESLNVAIATAIVCAEFRRRS 249


>gi|256825068|ref|YP_003149028.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256688461|gb|ACV06263.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 229

 Score = 42.0 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 16/151 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFS 75
           +L + +   N+G V RA        + + +      + K   S+A +   ID V    F 
Sbjct: 85  VLSEVRDPGNLGTVIRAADAAGAAFVVVTDASVDVTNPKVVRSTAGSLHHIDVVTGIAFP 144

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L+ A      + A                  A               +FG E  GL ++
Sbjct: 145 DLRAATGGTVRLVA--------------ADGYASTQLPEADLDGPHLWVFGNEARGLPDD 190

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++A  +A ++ P++    SLN+  A  + ++
Sbjct: 191 QVAACDAAVAVPLHGRAESLNLGTAAAVCLY 221


>gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8]
          Length = 238

 Score = 42.0 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 17/130 (13%)

Query: 49  RDGWPSEKARSSSANADCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPK 105
           R    S  A  +SA A   +  V+V +    LK    +  ++Y    R       +   +
Sbjct: 123 RAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVYGLDVRGEKAPWELDYAR 182

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                          + ++ G E  G+        + +   P+     SLN S A+ + +
Sbjct: 183 --------------PLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIAL 228

Query: 166 WECMENSIVS 175
           ++      V 
Sbjct: 229 YQARLARGVG 238


>gi|311268037|ref|XP_003131858.1| PREDICTED: RNA methyltransferase-like protein 1-like [Sus scrofa]
          Length = 422

 Score = 42.0 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E      V
Sbjct: 351 APAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQLRV 410

Query: 175 SSEKNVKEQN 184
            +E   +++ 
Sbjct: 411 RAEHLSRDRG 420


>gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
 gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
 gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
 gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
 gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
 gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
          Length = 246

 Score = 42.0 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 39/156 (25%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             G++      ++ ++   +     SLN++ A  ++
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGIL 241


>gi|168489978|ref|ZP_02714177.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
 gi|183571629|gb|EDT92157.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
          Length = 246

 Score = 42.0 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 39/156 (25%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             G++      ++ ++   +     SLN++ A  ++
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGIL 241


>gi|149012438|ref|ZP_01833469.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763494|gb|EDK70430.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP19-BS75]
          Length = 246

 Score = 42.0 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 39/156 (25%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             G++      ++ ++   +     SLN++ A  ++
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGIL 241


>gi|76643639|ref|XP_582975.2| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
          Length = 449

 Score = 42.0 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E       
Sbjct: 350 APAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQLRC 409

Query: 175 SSEKNVKEQNTPATKGEL-LSFLDY 198
               ++   ++  +  ++    +  
Sbjct: 410 GQWVSMPIFSSWPSGEDIAERLMTQ 434


>gi|20799558|gb|AAM28546.1|AF494517_1 putative tRNA/rRNA methyl transferase [Tomato big bud phytoplasma]
          Length = 210

 Score = 42.0 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 16/163 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           ++IL D Q   N G++ R+   F    +   N      +EK    S  A   +D  R   
Sbjct: 54  ILILDDIQDPSNAGLLLRSACAFGFKNIFFSNNSVDIYNEKTIQVSQGAIFNLDFFR--G 111

Query: 76  NLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           +L   ++ L     F+  T     N              L         + +I G E  G
Sbjct: 112 DLANFLSFLKKNDYFVIGTCGHENNFLS---------NNLINICSKYYKIALILGNEGQG 162

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV-WECMENSI 173
           ++      S+ +I+ P   L  SLN++ A  +++ +    N  
Sbjct: 163 ISVISRQKSDYLIAIPTTNLVESLNVAVAGSIIMFYMWATNKP 205


>gi|261749353|ref|YP_003257038.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497445|gb|ACX83895.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 249

 Score = 42.0 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               II G E  G+  + + ++      P      SLN+S A  ++++E     
Sbjct: 193 GPTAIILGNESNGICPKYLEITYEKAKIPAIHGISSLNVSVACGIILYEVFRQR 246


>gi|84385230|ref|ZP_00988262.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|84379827|gb|EAP96678.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
          Length = 244

 Score = 42.0 bits (98), Expect = 0.081,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 26/167 (15%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCV 67
             A G +I L       N+G + R    + +  +   +      + K  S++        
Sbjct: 97  PEATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVH 156

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---II 124
           +    + + L++A                       P   A +  E +   +      ++
Sbjct: 157 VSQTDLPAYLEQA---------------------NLPVYGAFLEGESVHKTEFTANGILL 195

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  G+           I+ P      SLN++ A  +++      
Sbjct: 196 MGSESHGIREHAAKYVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|326773519|ref|ZP_08232802.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
 gi|326636749|gb|EGE37652.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
          Length = 286

 Score = 42.0 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 10/136 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV--FSNLKEAIAD 83
           N+G   R+     +    LV PR   P   ++   S      +   R+  +  + E  A 
Sbjct: 146 NVGAAFRSAAALGI-DAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWPAMDELHAQ 204

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
              + A          + +A  E A            V ++ G E  GL++  I  ++ +
Sbjct: 205 GFTVAALA-----LSDTSVALDEFAA-SPACTAPDSRVAVVLGTEGDGLSHRTITAADEV 258

Query: 144 ISFPVNPLFPSLNISQ 159
           +  P+     SLN++ 
Sbjct: 259 VRIPMAGGVDSLNVAA 274


>gi|290769952|gb|ADD61721.1| putative protein [uncultured organism]
          Length = 257

 Score = 42.0 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 33/161 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FSNLKEA 80
           Q   N+G + R    F +      +P      + K   ++      I  V++ +++L E 
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDAYNPKTIQATMGG---IARVKLHYTSLPEL 167

Query: 81  IADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           IA L    +Y T     N +   L+                   I+ G E  G+ +E   
Sbjct: 168 IASLEDIPVYGTFLDGENMYTQPLS---------------AYGLIVMGNEGNGIGDEVER 212

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
           L N  +  P    +P       SLN++ A  ++  E    +
Sbjct: 213 LINRKLYIP---NYPAERETSESLNVAIATAVVCAEFRRQA 250


>gi|254419713|ref|ZP_05033437.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185890|gb|EDX80866.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 270

 Score = 42.0 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 44/149 (29%), Gaps = 12/149 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G V R    F    + L          KA   S  A  V+ S        E       
Sbjct: 134 NMGGVFRNAAAFGARAVLLDETCCDPFYRKAIRVSVGA--VLRSPFTVGGSAE-----DL 186

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           + A     +     VLA   +A +          V ++ G E  GL    I      +  
Sbjct: 187 VAAM----QTAGVEVLALTPSATLRLADYRPQGPVALMVGSEGPGLPRVVIDRC-RAVGV 241

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVS 175
           P+   F SLN++    L +          
Sbjct: 242 PMAGGFDSLNVAVTSALALHHVTSGRPAG 270


>gi|148975164|ref|ZP_01812088.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145965088|gb|EDK30338.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 171

 Score = 42.0 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 34/164 (20%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     I L +P+   N+G V RA                    E   +          +
Sbjct: 2   NKSHVTIGLTNPKSPTNVGAVMRAAG-------------CYQVDEVKYT----GQRYEKA 44

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEA--AIVLNE------RIFSGQNVG 122
            +  ++ K A          T     +F   L P+     + L E      R    +N  
Sbjct: 45  AKFHTDTKSA----TRTIPLTGV--ESFLDNLDPETKIVCVELAEGATPLPRFKHPENAI 98

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            IFG E   +T +    ++ ++  P       +N++  V ++++
Sbjct: 99  YIFGPEDGSITQDVADRADHVVYVPT---VGCMNLAATVNVLLY 139


>gi|74190703|dbj|BAE28150.1| unnamed protein product [Mus musculus]
          Length = 418

 Score = 42.0 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +G    ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E     
Sbjct: 345 TGAPAVVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 404

Query: 173 IVSSEKNVKEQNT 185
            +  E   ++++ 
Sbjct: 405 RIKVEDLSRDRSY 417


>gi|94266069|ref|ZP_01289787.1| tRNA (guanine-N(1)-)-methyltransferase [delta proteobacterium
           MLMS-1]
 gi|93453352|gb|EAT03783.1| tRNA (guanine-N(1)-)-methyltransferase [delta proteobacterium
           MLMS-1]
          Length = 436

 Score = 42.0 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 26/153 (16%)

Query: 31  VARAMWNFNLTQLRLVNP----RDGWPSEKARSSSANADCV-------IDSVRVFSNLKE 79
           +AR    + + +  LV P    ++      A         +       ++ V V ++L +
Sbjct: 280 IARCGRTYGIGRFYLVTPYADQQELVAELLAHWLHGKGGELNPARKSALELVEVVADLAQ 339

Query: 80  AIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
               +         +  T+AR +   +  +  ++    L +R+ +GQ   ++ G   WGL
Sbjct: 340 LYQRVTARRGEAPLVVGTSARPQGGGQ--MEYRQ----LRQRLAAGQPALLLLGT-AWGL 392

Query: 133 TNEEIALSNAII-SFPVNPLFPSLNISQAVLLM 164
             + +   +  +        +  L +  A  ++
Sbjct: 393 AAQALDGIDCFLPPIDGAGDYNHLAVRSAAAIV 425


>gi|157150531|ref|YP_001449839.1| spoU rRNA methylase family protein [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075325|gb|ABV10008.1| spoU rRNA Methylase family protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 246

 Score = 42.0 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 28/52 (53%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           E++   QN  ++ G E  G+++   A ++ ++  P+     SLN++ A  ++
Sbjct: 190 EKLKGSQNFILVMGNEGQGISSMIEAAADQLVHIPMKGKAESLNVAVAAGIL 241


>gi|119713240|gb|ABL97306.1| putative tRNA/rRNA methyltransferase [uncultured marine bacterium
           HF10_12C08]
          Length = 228

 Score = 42.0 bits (98), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 57/157 (36%), Gaps = 11/157 (7%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N     + +L      +N+G + R+   F++  + L +      +     ++++A   I 
Sbjct: 74  NKETSIIFLLDQLDDPQNVGAIFRSALAFDIDGIILTDHNSVAENSFLAKTASSAIDKIP 133

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             ++ +     I+    I       ++    +      A      I     +  I G E 
Sbjct: 134 FTKIKN-----ISSCIKIL------KDQGYWIYGLDMEAQSSITDIAFPNKIVFILGSES 182

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            G+     +L +  +   ++    SLN+S A  +M++
Sbjct: 183 KGMRRVTSSLCDENLKIKMSDNLESLNVSNAAAIMMF 219


>gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund]
 gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund]
          Length = 261

 Score = 42.0 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             V I  G E  G+++E  +L +  +  P+     SLN   A  +M++E +  
Sbjct: 205 GKVIICVGNEGNGVSDEVYSLGDEKVKIPMPGNAESLNAGVAASIMMYEVVRQ 257


>gi|156101974|ref|XP_001616680.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805554|gb|EDL46953.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 2316

 Score = 42.0 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +   +I G E+ GL +  + L +  +  P   +  SLN+  +  + ++E     +
Sbjct: 2262 ERTILILGDEKEGLPSSVLLLLHHCVEIPGKGIIRSLNVHVSAAVTIYEYCRQHL 2316


>gi|158425126|ref|YP_001526418.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158332015|dbj|BAF89500.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 156

 Score = 42.0 bits (98), Expect = 0.085,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           ++FGRE  G   E  A ++A +  P+ P   SLN++ +  + + E +  +        
Sbjct: 98  LLFGRESAGAPEEVHAAADARVKIPLRPGMRSLNVAVSAAMALGEALRQTNGFPAPEP 155


>gi|319956873|ref|YP_004168136.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319419277|gb|ADV46387.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 270

 Score = 42.0 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 42/166 (25%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLR--------LVNPRDGWPSEKARSSSA------ 62
           I L      +N+GM+ R+     +  +         LV+P         ++S+       
Sbjct: 123 IALDRVTNPQNVGMIIRSCAAGRIDGIVMSAKGNAPLVSPLT------IKASAGTLFKIP 176

Query: 63  --NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              AD ++ ++R+F                    R     +      A     ++     
Sbjct: 177 IIRADSLLGTLRLF--------------------REAGAKLYTLDSHASTDYRKLDPTSR 216

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              I G E  G++ E  ALS+  I+ P+N    SLN++    L+ +
Sbjct: 217 EVFILGNESEGVSPEIAALSDERIAIPMNRGVESLNVAVTASLLAF 262


>gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus]
          Length = 459

 Score = 42.0 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 9/124 (7%)

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA--PKEAAIVLNERIFSGQ 119
           AN+D ++++     +  + + D    + +TA+ R+  K +++  P E    L+   F+ +
Sbjct: 338 ANSDQILENDNSIEDTIDKLVDQTKSHKSTAKTRSLVKKLISQLPIEPYYTLD---FTKK 394

Query: 120 NVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            + ++ G E  G++ E   L +A     ++ P+     SLN+  A  ++ +E     +  
Sbjct: 395 EIVLVIGGETEGVSLESCKLLHARNCVRVNIPLTNGVESLNVGVAAGIVTFEMKRQFVTK 454

Query: 176 SEKN 179
           + +N
Sbjct: 455 NIEN 458


>gi|189191132|ref|XP_001931905.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973511|gb|EDU41010.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 651

 Score = 42.0 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 69/172 (40%), Gaps = 17/172 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCV--IDSVRVFSNLKEA 80
             N+G +AR+ +   +    +V P       S  A  +S+ A     +  V+      ++
Sbjct: 478 EGNLGAIARSAYVLGVD--AIVTPTHHTAEWSPIAIKASSGAAEAMPLFRVKEPEQFFQS 535

Query: 81  IADLHF-IYAT-----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            + + + IYA+     + ++  +    L+ + + +  +    +     ++ G E  G+  
Sbjct: 536 SSQVGWRIYASDAVPLSTQDGQHVVYSLSQRYSPLPADHSPLAEHPTILMMGSEHSGVKK 595

Query: 135 EEIALSNAIISFP---VNPLFP--SLNISQAVLLMVWECMENSIVSSEKNVK 181
               +++  +  P           S N+S A  ++ ++ M+    ++E++ +
Sbjct: 596 HLAKMAHYKVGIPHGRSVDEVGVDSFNVSVAAGILCYQMMQRPQSAAERDPE 647


>gi|224368949|ref|YP_002603113.1| RNA methyltransferase (TrmH family protein, group 3)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691666|gb|ACN14949.1| RNA methyltransferase (TrmH family protein, group 3)
           [Desulfobacterium autotrophicum HRM2]
          Length = 253

 Score = 42.0 bits (98), Expect = 0.087,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 21/167 (12%)

Query: 16  VIILV-DP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
             ILV +  +  +N G + R      +  + +   R   PS     +SA A   ++   +
Sbjct: 102 RFILVIETLEDPQNFGALIRTALCAGVDHIMIPKERSASPSPSVSRASAGA---MEHAEI 158

Query: 74  FSNLKEAIADLHFIYATTARNRNN----FKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                        I  T    R      F       +    L     +G  V ++ G E 
Sbjct: 159 -----------SLITNTAGLLRQLKAMGFWVAGLDGQGTTPLFSADLTGNLV-LVVGGEH 206

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            G+        + ++S P+     SLN S A  + ++E +    +++
Sbjct: 207 KGIRPLVKKECDFLVSLPIKAGVTSLNASVAGGIAMYEALRQRQLTA 253


>gi|327404354|ref|YP_004345192.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327319862|gb|AEA44354.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 242

 Score = 42.0 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            ++L   Q   N+G + R    F + Q+          + K   SS  A   I     + 
Sbjct: 104 TLVLDGVQDPGNMGTMLRLADWFGVKQVICSKDTVDCYNSKVIQSSMGAIYRIP--VHYL 161

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           +L   + D          +  N+K V  PK+                +I G E  G+  E
Sbjct: 162 DLASYLKDNQQQKFGAMLHGTNYKKVSYPKD--------------SILIMGNEGKGVRPE 207

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
             AL +  ++ P      SLN++ A  +++ E ++
Sbjct: 208 IEALFDVPVTIPRYGEAESLNVATATAILLAEIVQ 242


>gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 259

 Score = 42.0 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 20/172 (11%)

Query: 14  GPVIILV-DPQLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVI 68
            P ++L+   Q   N+G + R+   FN   + L    V+P     S K   S   +   +
Sbjct: 100 SPAVLLLDGVQDPGNLGTLIRSADAFNYQDIYLGKGTVDPY----SPKVVRSMQGSQFHV 155

Query: 69  DSVRVFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
              +V   L+EA+A L    Y   A   N+    L        L +R   G    II G 
Sbjct: 156 RLHQVV--LEEAMASLRKAGYCLAATELNDQAQALETYN----LKKRQKWG----IILGN 205

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           E  G+  E IA S+  +   +     SLN++ A  + +   + N  V S K 
Sbjct: 206 EGNGVRPEIIAASDISLYITMLGQAESLNVAIAGSIAMHHFLPNGSVGSTKE 257


>gi|227543952|ref|ZP_03974001.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909702|ref|ZP_07127163.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227186068|gb|EEI66139.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300893567|gb|EFK86926.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 258

 Score = 42.0 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 61/151 (40%), Gaps = 15/151 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS-NLKEA 80
           Q   N+G + R       T   +V  R       K   S   +   +   ++F  +L++ 
Sbjct: 119 QDPGNVGTMVRTADAAGFTG-VVVGQRSADLFGPKVVRSMQGSQFHL---QMFEGDLRKW 174

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I D   I A T      + + L P+       +    G    +I G E  G++++ ++ +
Sbjct: 175 IDDFKSINAPT------YGTQLNPQAKNFRTVD---PGDTFALIMGNEGQGMSDDLLSQT 225

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +  P+     SLN++ +  +++++  +N
Sbjct: 226 TDNLYIPMRGEAESLNVAISAGILMFQLNQN 256


>gi|170047080|ref|XP_001851065.1| Rnmtl1 protein [Culex quinquefasciatus]
 gi|167869628|gb|EDS33011.1| Rnmtl1 protein [Culex quinquefasciatus]
          Length = 446

 Score = 42.0 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 57/177 (32%), Gaps = 27/177 (15%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SV 71
              ++  + +   N+G + R+       ++ L+         K    +  A   I     
Sbjct: 276 PITVVCDNIREPNNLGSIIRSSAAIPTGRIVLLKGCTCPWDPKCLRGATGAQFRIPISGP 335

Query: 72  RVFSNLKEAIA-DLHFIYA--TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                L+E I  +  F+ A   T R    F                    Q+V +  G E
Sbjct: 336 VAMDELEELIPPNATFLVADNKTGRIDGKFS-------FCRYDAANYREMQHVVLFIGGE 388

Query: 129 RWGLTNE--------------EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G++N+              + ++    +  P+     SLN + A+ ++++E    
Sbjct: 389 TLGISNDVRRFITGFTEKSLNDTSVC-YNVHIPLANGIESLNTASALSVLLYEIKRQ 444


>gi|160358744|sp|A1L2E4|RML1B_DANRE RecName: Full=RNA methyltransferase-like protein 1B
          Length = 445

 Score = 42.0 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             +  +I G E  GL+ E + L+       +  P+     SLN + A  ++++E  +  +
Sbjct: 379 AGHTSLIIGGETHGLSREALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQLL 438


>gi|148993166|ref|ZP_01822732.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|147928140|gb|EDK79158.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP9-BS68]
          Length = 236

 Score = 42.0 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 39/156 (25%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 101 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 157

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 158 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 195

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             G++      ++ ++   +     SLN++ A  ++
Sbjct: 196 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGIL 231


>gi|120537815|gb|AAI29485.1| Rnmtl1-b protein [Danio rerio]
          Length = 448

 Score = 42.0 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             +  +I G E  GL+ E + L+       +  P+     SLN + A  ++++E  +  +
Sbjct: 382 AGHTSLIIGGETHGLSREALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQLL 441


>gi|116253233|ref|YP_769071.1| aminotransferase/methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257881|emb|CAK08979.1| putative aminotransferase/methyltransferase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 153

 Score = 42.0 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 21/167 (12%)

Query: 12  AKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVI 68
                + L  P +  N G + R         + L+ P     S++    +     A   +
Sbjct: 1   MTSLRLALYQPDIPGNTGTILRLAACLGFA-VDLIEPAGFDISDRNLKRAGMDYIAAAAL 59

Query: 69  DSVRVFSNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
                +   +          I A+T            P +                ++FG
Sbjct: 60  TRHVSWDRFEAWRLTTGRRLILASTKAAERYTDLSFRPDDV---------------LLFG 104

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           RE  G+ ++    ++A +  P+     S+N++ +  ++V E M  ++
Sbjct: 105 RESAGVPDQVHETADARVLIPMVEGQRSINVAVSAAMIVGEAMRQTV 151


>gi|332673651|gb|AEE70468.1| RNA methyltransferase [Helicobacter pylori 83]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|317181870|dbj|BAJ59654.1| hypothetical protein HPF57_0580 [Helicobacter pylori F57]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|317180325|dbj|BAJ58111.1| hypothetical protein HPF32_0529 [Helicobacter pylori F32]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|317179082|dbj|BAJ56870.1| hypothetical protein HPF30_0773 [Helicobacter pylori F30]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|317177613|dbj|BAJ55402.1| hypothetical protein HPF16_0805 [Helicobacter pylori F16]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|308182709|ref|YP_003926836.1| RNA methyltransferase [Helicobacter pylori PeCan4]
 gi|308064894|gb|ADO06786.1| RNA methyltransferase [Helicobacter pylori PeCan4]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|308063657|gb|ADO05544.1| RNA methyltransferase [Helicobacter pylori Sat464]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|308061885|gb|ADO03773.1| RNA methyltransferase [Helicobacter pylori Cuz20]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|308184337|ref|YP_003928470.1| RNA methyltransferase [Helicobacter pylori SJM180]
 gi|308060257|gb|ADO02153.1| RNA methyltransferase [Helicobacter pylori SJM180]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|315586762|gb|ADU41143.1| RNA methyltransferase [Helicobacter pylori 35A]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|297379754|gb|ADI34641.1| RNA methyltransferase, TrmH family, group 3 [Helicobacter pylori
           v225d]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|261838205|gb|ACX97971.1| 23S rRNA methyltransferase [Helicobacter pylori 51]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|260435563|ref|ZP_05789533.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
 gi|260413437|gb|EEX06733.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
          Length = 250

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 40/185 (21%)

Query: 18  ILVDPQLGENIGMVARAMWN-------FNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +L   Q   N+G + R                   V+P       K   +SA A   +  
Sbjct: 85  VLDRIQDPGNLGTLLRTALAADVNAVWMGAG----VDP----LGTKVLRASAGALLQLPH 136

Query: 71  VRVFSN-----------LKEAIADLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIF 116
            R   +           LK+ ++    + AT    A   +                  + 
Sbjct: 137 QRFGPSEAMAISQLLQELKQLVSFGVQVVATLVPDATKADPPSPYWD-----------LD 185

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
                 ++ G E  GL  +  A     ++ P +    SLN++ A + ++ E    ++ + 
Sbjct: 186 WTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAAVPLLLERRRATMTAK 245

Query: 177 EKNVK 181
            +   
Sbjct: 246 SQQFG 250


>gi|288574821|ref|ZP_06393178.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570562|gb|EFC92119.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 269

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            + ++ G E  GL+       + +   P+     SLN S A  L ++E    + ++ 
Sbjct: 213 KLVLMVGSEGEGLSRLSSERCDDLRRIPMVGKTGSLNASVAAALGMFEWRRLNPLAE 269


>gi|217033500|ref|ZP_03438929.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
 gi|216944025|gb|EEC23456.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|207092282|ref|ZP_03240069.1| hypothetical protein HpylHP_04814 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|15645178|ref|NP_207348.1| hypothetical protein HP0553 [Helicobacter pylori 26695]
 gi|2313669|gb|AAD07619.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
           ZC1]
 gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
           ZC1]
          Length = 254

 Score = 42.0 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 19/148 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE--- 79
           Q   NIG + R     +L  + L        + K   ++  +   I  VR   +L E   
Sbjct: 118 QDPGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAAQGSHFHIPVVR--GDLAEWID 175

Query: 80  AIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            + D    ++ T               E A+  ++   +G    II G E  G+  + +A
Sbjct: 176 ILQDQGVPVFGTAL------------DEEAVPYSDIQHTGA-FAIIMGNEGSGIQPQLLA 222

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +++  +  P+     SLN++ A  ++++
Sbjct: 223 MTDQNMIIPLFGQAESLNVAVATGIVLY 250


>gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 302

 Score = 42.0 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   F+     ++  +   P+E    +  ++ A  +I  +++ +
Sbjct: 157 VLDQVTDPHNVGAIMRSAVAFDAA--AVITTQRHSPTESGVLAKSASGALELIPYIQI-T 213

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +   +    +   + L          E  FSG+ V ++ G E  GL  +
Sbjct: 214 NLADALGELHRLGFVSIGLDSEGPAPL----------EGTFSGEKVALVLGSEGKGLRQK 263

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                NA+    +     SLN+S 
Sbjct: 264 TRETVNALARLDMPGAIKSLNVSN 287


>gi|291405419|ref|XP_002718940.1| PREDICTED: RNA methyltransferase like 1 [Oryctolagus cuniculus]
          Length = 413

 Score = 42.0 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 62/203 (30%), Gaps = 48/203 (23%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK-EAIAD 83
             N+G V R+      +++ L          K   +   A      V V +NL+ EA+ +
Sbjct: 216 PGNLGTVLRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHF---QVPVINNLEWEAVPE 272

Query: 84  -------------LHFIYATTARNRNNFKSVLAPK--------EAAIVLNERIFSG---- 118
                                A ++     V  P+        E    L      G    
Sbjct: 273 HLPPNTRVYVADNCGLYAQAHASDKAG---VCDPRFLKFHKSKEEVEELENGAGKGWLPE 329

Query: 119 ------------QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVL 162
                           ++ G E  G++ E + L+       +  PV P   SLN + A  
Sbjct: 330 LEVQSYDLDWTEAPAAVVIGGETHGVSLESLWLAERTGGKRLLIPVVPGVDSLNSAMAAS 389

Query: 163 LMVWECMENSIVSSEKNVKEQNT 185
           ++++E        +E   + Q+ 
Sbjct: 390 ILLFEGKRQLRAKAELGSRSQSY 412


>gi|297699541|ref|XP_002826840.1| PREDICTED: RNA methyltransferase-like protein 1-like [Pongo abelii]
          Length = 420

 Score = 42.0 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E +G++ E + L+ +     +  PV P   SLN + A  ++++E       
Sbjct: 349 APAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRG 408

Query: 175 SSEKNVKEQNT 185
            +E   ++++ 
Sbjct: 409 KAEDLSRDRSY 419


>gi|255652983|ref|NP_001157404.1| RNA methyltransferase-like protein 1B [Danio rerio]
          Length = 449

 Score = 42.0 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             +  +I G E  GL+ E + L+       +  P+     SLN + A  ++++E  +  +
Sbjct: 383 AGHTSLIIGGETHGLSREALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQLL 442


>gi|76799750|ref|ZP_00781835.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 18RS21]
 gi|76584896|gb|EAO61569.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 18RS21]
          Length = 68

 Score = 42.0 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 124 IFGRERWGLTNEEI-ALSNAIISFPVNPLF-PSLNISQAVLLMVWECMENS 172
           +FGRE  GL    +   +   +  P+N     SLN+S  V ++V+E +   
Sbjct: 1   MFGREDKGLPETFMREHAEKALRIPMNDEHVRSLNVSNTVCMIVYEALRQQ 51


>gi|299532311|ref|ZP_07045704.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
 gi|298719719|gb|EFI60683.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
          Length = 263

 Score = 42.0 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSE--KARSSSANADCVIDSVR 72
            ++L   Q   N+G + R+   F  TQ L L      W  +  +A   +     ++++  
Sbjct: 117 TVVLDRVQDAGNVGSILRSASAFGFTQILALKGTAALWSQKVLRAGMGAHFGLHLVEAAS 176

Query: 73  VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           V       +  L   +  T++           P   A  +              G E  G
Sbjct: 177 VDD-----VQGLQVPLVVTSSHQGTLIHEADLPWPCAWAM--------------GHEGQG 217

Query: 132 LTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
           + +  + +++  IS   P      SLN++ A  + + 
Sbjct: 218 VGDALMEMASHRISIAQPGGEE--SLNVAAAAAICLH 252


>gi|197335061|ref|YP_002155413.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
 gi|197316551|gb|ACH65998.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
          Length = 171

 Score = 42.0 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 30/160 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-----ANADCV 67
               I L +P+   N+G V RA   + +  +R      G   ++A           +   
Sbjct: 4   THVTIGLSNPKSPTNVGAVMRAAGCYQVDDVR----YTGERYDRAAKFQTDTKKVASKIP 59

Query: 68  IDSV-RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           + SV  +  +L E                 + K V        V   +         +FG
Sbjct: 60  LTSVNCLLDDLPE-----------------DMKVVCVELAEGAVSLPQFQHPDKAIYVFG 102

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E   +T +    ++ ++  P       +N++  V ++++
Sbjct: 103 PEDGSITQQVADRADHVVYIPT---VGCMNLAATVNVLLY 139


>gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group]
          Length = 517

 Score = 42.0 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 45/196 (22%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P   +  K PV I L +    +N+G + R+ + F    + L        S     +SA +
Sbjct: 317 PVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGS 376

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNVG 122
             +I+           +     +    + +  N   VL       AI L+E +  G+   
Sbjct: 377 LELIE-----------LLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPLSE-VVPGEPTI 424

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN------------------PLFP----------- 153
           ++ G E  GL          ++  P N                    +            
Sbjct: 425 LVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGADTDTDGGEEGDNYSGNQDMKSFLAV 484

Query: 154 -SLNISQAVLLMVWEC 168
            SLN+S A  ++++  
Sbjct: 485 ESLNVSVAAGVLLYHL 500


>gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 252

 Score = 42.0 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQANLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL  +  A  LN+       + +I G E  G+
Sbjct: 171 WIANLEE--EGVPVIGA-----------VLDAQ--AKSLNDISKRD-TLALIVGNEGKGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E  A  +  +  P+     SLN++ A  ++++   +
Sbjct: 215 SEELQARLSEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|87121417|ref|ZP_01077306.1| 23S rRNA methyltransferase [Marinomonas sp. MED121]
 gi|86163260|gb|EAQ64536.1| 23S rRNA methyltransferase [Marinomonas sp. MED121]
          Length = 175

 Score = 42.0 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 25/158 (15%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSS-----ANADCVI 68
             I L +P+   N+G V RA   + + Q L       G   ++A   +        D  +
Sbjct: 6   VCIGLTNPKSTSNVGSVMRAAGCYEVDQVLY-----TGRRYDRAAKLTTDTKKVRIDIPL 60

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           ++V       EA+     +   T     + K V                 +    IFG E
Sbjct: 61  NNV-------EALG----VNCLTQAIDADTKIVCVDLVKGATPLPEFKHPEKAIYIFGPE 109

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              ++   I  ++ ++  P       +N++ +V ++++
Sbjct: 110 DNTISQAVIDKADHVVFVPT---VGCMNLAASVNVLLY 144


>gi|281211908|gb|EFA86070.1| tRNA/rRNA methyltransferase SpoU family protein [Polysphondylium
            pallidum PN500]
          Length = 1626

 Score = 42.0 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            Q   ++ G+E+ G+  E + L +  I  P   +  SLN+  +  +++WE  +  + S +
Sbjct: 1568 QKCLLLLGQEQNGIPAEYLELVDYCIEIPQFGVTRSLNVHVSASIVIWEYSQQQLNSKQ 1626


>gi|194751485|ref|XP_001958057.1| GF10725 [Drosophila ananassae]
 gi|190625339|gb|EDV40863.1| GF10725 [Drosophila ananassae]
          Length = 421

 Score = 42.0 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 22/181 (12%)

Query: 14  GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC---VIDS 70
              ++  + +   N+G + R       +Q+ + +        KA            ++D 
Sbjct: 246 PVTVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRIPILDD 305

Query: 71  VRVFSNL-----KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V  +  L      E  +D     A     +      +   + + V       G    +I 
Sbjct: 306 VT-WEELSNIIPPEVSSDCRVFIAENNLEKRESHETIDYADISDV-------GAQNFLII 357

Query: 126 GRERWGLTNEEIALSNA------IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           G E  G++       +        +  P+     SLN++ A+ L+++E        +E  
Sbjct: 358 GGESHGVSEAAYRFKHLVGGKGKCVYIPLAAGIDSLNVASALTLLLFELRRKINQQAEAG 417

Query: 180 V 180
            
Sbjct: 418 A 418


>gi|90416529|ref|ZP_01224460.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
 gi|90331728|gb|EAS46956.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
          Length = 258

 Score = 42.0 bits (98), Expect = 0.098,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 19/167 (11%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
              +L ++ + P+I L      +N+GM+ R++       L L  P  G     A    A+
Sbjct: 104 ALEKLPSADQRPLIALDGITNPQNLGMIIRSITASPAYGLLL--PSKGCADISALVIKAS 161

Query: 64  ADCVID-SVRVFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           A  V   ++    +L +A+       F   T             P               
Sbjct: 162 AGTVFKGNILRCESLAKALPAFIEKGFEVCT------LSSHQATP-------LAEFKPQA 208

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  + G E  G++ E  ALS   +  P+     SLN++    L+ +
Sbjct: 209 PIIYVLGNETEGVSKEIAALSKHRVGIPMANGVESLNVAITAALIAF 255


>gi|326384122|ref|ZP_08205805.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197282|gb|EGD54473.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 231

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 15/145 (10%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              NIG V R    F   ++ +V  R  W    A  +          +R  + + E +A 
Sbjct: 91  HDSNIGTVVRTANAFLAAEVHIVG-RRRWNRRGAMVT-----DRYQHLRHHATVDELMA- 143

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                   AR  +     +       V  ER    +   ++FG+E  G+++E    ++  
Sbjct: 144 -------WAREHDLTVVAVD-NTPGAVALERTELPRRALLVFGQEGPGVSDETQDRADLT 195

Query: 144 ISFPVNPLFPSLNISQAVLLMVWEC 168
           +S        S+N   A  +++   
Sbjct: 196 VSIAQFGSTRSINAGVAAGIVMHSW 220


>gi|325847687|ref|ZP_08170010.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480899|gb|EGC83951.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 243

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+   F+   +  +N      +EK   +S  +   ++    F +L+  + 
Sbjct: 108 QDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLN----FIDLE--LE 161

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D+  +         ++K +LA  +      +   S   + +  G E  G++     LS+ 
Sbjct: 162 DVKDLI------NKDYKLILA--DMDGKSVDYFKSCDKIILAIGNEANGISKSLKDLSDD 213

Query: 143 IISFPVNPLFPSLNISQAVLLM 164
            +S  ++    SLN + A  ++
Sbjct: 214 FVSIKMDGEIESLNAAIAASIL 235


>gi|322505559|emb|CAM43084.2| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 2037

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 11/176 (6%)

Query: 4    YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            +   L+   +  +++    +   NI  + R    F +  +  V  +  +      +++ +
Sbjct: 1869 HPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIV-VPDKRVFEHPHFVAAARS 1927

Query: 64   ADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A+  I    V   +L   +  L          R  +  V   + AA V  E     +   
Sbjct: 1928 AELWIPWEEVMPKDLPCYLEGL---------RRRGYMVVGIEQTAASVSMEHFSFPKRCA 1978

Query: 123  IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++ G E  G+    I L +  +  P   L  SLN+  A  ++++E     +++   
Sbjct: 1979 VVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHLMAKPH 2034


>gi|319408375|emb|CBI82028.1| tRNA/rRNA metyltransferase [Bartonella schoenbuchensis R1]
          Length = 276

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 19/151 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNF--NLTQLRLVNPRDGWPSEKAR--SSSANADCVI 68
              +I++       N+G + R+   F        ++      P E      +++ A  +I
Sbjct: 126 TNLIIVMDQITDPHNVGAIMRSAVAFKAG----AIITTYRHSPQESGVLAKAASGALELI 181

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D + V  NL EA+ ++H     +          L       +  E   +G+ + +I G E
Sbjct: 182 DYITV-RNLAEALKEIHQAGFNS----------LGLDSEGELPLETALTGKKIALILGAE 230

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
             GL  +     +++    +     SLN+S 
Sbjct: 231 GKGLRKKTRETVHSLARLNIPGDIKSLNVSN 261


>gi|212697338|ref|ZP_03305466.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675787|gb|EEB35394.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 243

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+   F+   +  +N      +EK   +S  +   ++    F +L+  + 
Sbjct: 108 QDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLN----FIDLE--LE 161

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           D+  +         ++K +LA  +      +   S   + +  G E  G++     LS+ 
Sbjct: 162 DVKDLI------NKDYKLILA--DMDGKSVDYFKSCDKIILAIGNEANGISKSLKDLSDD 213

Query: 143 IISFPVNPLFPSLNISQAVLLM 164
            +S  ++    SLN + A  ++
Sbjct: 214 FVSIKMDGEIESLNAAIAASIL 235


>gi|154343391|ref|XP_001567641.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 2037

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 11/176 (6%)

Query: 4    YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            +   L+   +  +++    +   NI  + R    F +  +  V  +  +      +++ +
Sbjct: 1869 HPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIV-VPDKRVFEHPHFVAAARS 1927

Query: 64   ADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A+  I    V   +L   +  L          R  +  V   + AA V  E     +   
Sbjct: 1928 AELWIPWEEVMPKDLPCYLEGL---------RRRGYMVVGIEQTAASVSMEHFSFPKRCA 1978

Query: 123  IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++ G E  G+    I L +  +  P   L  SLN+  A  ++++E     +++   
Sbjct: 1979 VVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHLMAKPH 2034


>gi|317013971|gb|ADU81407.1| RNA methyltransferase [Helicobacter pylori Gambia94/24]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + ++S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGIL 222


>gi|307637236|gb|ADN79686.1| rRNA methylase [Helicobacter pylori 908]
 gi|325995827|gb|ADZ51232.1| rRNA methylase [Helicobacter pylori 2018]
 gi|325997421|gb|ADZ49629.1| putative rRNA methyltransferase [Helicobacter pylori 2017]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + ++S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGIL 222


>gi|303260346|ref|ZP_07346316.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303265125|ref|ZP_07351038.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
 gi|302638512|gb|EFL68977.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302645342|gb|EFL75576.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
          Length = 212

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 39/156 (25%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 77  QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 133

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 134 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 171

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             G++      ++ ++   +     SLN++ A  ++
Sbjct: 172 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGIL 207


>gi|192359318|ref|YP_001982265.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190685483|gb|ACE83161.1| RNA methyltransferase, TrmH family [Cellvibrio japonicus Ueda107]
          Length = 259

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             NL +A+ D     A+          + A    A               + G E  G++
Sbjct: 173 CQNLVDALKDFSRHGAS----------LCALSSHAHHNLSGFRPEGASIYVLGNETHGVS 222

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +    L    I  P+N    SLN++    L+ +
Sbjct: 223 DPVFQLCTEKIKIPMNNGVESLNVAVTAALIAF 255


>gi|78212412|ref|YP_381191.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
 gi|78196871|gb|ABB34636.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
          Length = 249

 Score = 42.0 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 39/197 (19%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWN-------FNLTQLRLVNPRDGWPSE 55
           P  P   +      ++L   Q   N+G + R                   V+P       
Sbjct: 74  PAVPPELDFL----LVLDRIQDPGNLGTLLRTALAADVNAVWMGAG----VDP----LGT 121

Query: 56  KARSSSANADCVIDSVRVFSNLKEAIADLHF-----------IYATTARNRNNFKSVLAP 104
           K   +SA A   +   R   +   AI+ L             + AT   +      +   
Sbjct: 122 KVLRASAGALLQLPHQRFGPSEAMAISQLRQGLKQLAALGVQVVATLVPDSTQASPIPYW 181

Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
                     +       ++ G E  GL  +  A     ++ P +    SLN++ A + +
Sbjct: 182 D---------LDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAAVPL 232

Query: 165 VWECMENSIVSSEKNVK 181
           + E    ++ +  +   
Sbjct: 233 LLERRRATMTAKSQQFG 249


>gi|319938687|ref|ZP_08013051.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
 gi|319811737|gb|EFW08003.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
          Length = 246

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++    N  ++ G E  G+++E    ++ +I   +     SLN++ A  ++++  
Sbjct: 191 KLAPLSNFALVLGNEGQGISSEMAEAADYLIHISMKGRAESLNVAVAAGILIFAL 245


>gi|317009469|gb|ADU80049.1| RNA methyltransferase [Helicobacter pylori India7]
          Length = 227

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCALFLGSEHEGLSKKILAKMDTILSVKMQRDFDSLNVSVAAGIL 222


>gi|221060168|ref|XP_002260729.1| rRNA methylase [Plasmodium knowlesi strain H]
 gi|193810803|emb|CAQ42701.1| rRNA methylase, putative [Plasmodium knowlesi strain H]
          Length = 2247

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
            +   +I G E+ GL    +   +  I  P   +  SLN+  +  + ++E     ++
Sbjct: 2192 EKTVLILGDEKEGLPASVLLFLHHCIEIPGKGIIRSLNVHVSAAITIYEYFRQHLL 2247


>gi|183981185|ref|YP_001849476.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
 gi|183174511|gb|ACC39621.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
          Length = 154

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P++  N G   R        +L LV P     SE     +      + SV V  +L +A
Sbjct: 8   SPRIAPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHGSLTQA 66

Query: 81  IADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
              L    ++A TA     F  V                     ++FG E  GL    +A
Sbjct: 67  WDALLPARVFAFTAGASVTFSDVDFR--------------PGDVLMFGPEPTGLDAATLA 112

Query: 139 LSNAI--ISFPV 148
            ++    +  P+
Sbjct: 113 DAHITQQVRIPM 124


>gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 296

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   FN     ++  +   P+E    +  ++ A  +I  ++V +
Sbjct: 151 VLDQVTDPHNVGAIMRSAVAFNAG--AVITTQRHSPTESGVLAKSASGALELIPYIQV-T 207

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +  +T    +   + L          E  FSG+ V ++ G E  GL  +
Sbjct: 208 NLADALGELHKLGFSTIGLDSEGPAPL----------EGTFSGEKVALVLGSEGKGLRQK 257

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                NA+    +     SLN+S 
Sbjct: 258 TRETVNALARLDMPGAIKSLNVSN 281


>gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           RP62A]
 gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 246

 Score = 42.0 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      L  L ++      P +     ++    +     +F ++   I 
Sbjct: 114 QDPGNLGTLIRTADAAGL-DLIVMEKGTADPFQDKVIRASQGS-IFHIPVIFDDIYNYIH 171

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
             +  +Y T               E A+  N+ + +  N  ++ G E  G+  + +  + 
Sbjct: 172 QFNGPVYGTA-------------LENAVSFND-VEAQANFALVLGNEGEGVNPDLLKETT 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             ++ P+     SLN++ A  +++++ 
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244


>gi|332199288|gb|EGJ13366.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41317]
 gi|332199985|gb|EGJ14059.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47901]
          Length = 212

 Score = 41.6 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 77  QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 133

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 134 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 171

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 172 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 211


>gi|322822058|gb|EFZ28222.1| hypothetical protein TCSYLVIO_5548 [Trypanosoma cruzi]
          Length = 1716

 Score = 41.6 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 68/175 (38%), Gaps = 14/175 (8%)

Query: 4    YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            +   L+   + P+I+L    Q   N+  + R    F + +  +V+ +  +      +++ 
Sbjct: 1551 HPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTIEK-VVVSDQAVFAHPHFVAAAR 1609

Query: 63   NAD-CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQN 120
            +A+  +     +  NL E +             R +  +++  ++ A  V        + 
Sbjct: 1610 SAELWMPWDAVMAKNLPEYL----------GSLRQDGYTLIGIEQTAGSVSIASYRFPER 1659

Query: 121  VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              I+ G E  G+  E + + +  +  P   L  SLN+     L+++E     ++ 
Sbjct: 1660 AAILLGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHLME 1714


>gi|256370817|ref|YP_003108642.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009609|gb|ACU52969.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 242

 Score = 41.6 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 31/182 (17%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P + NS K P+ IIL       N G + R      +  + +        +  +  +S+  
Sbjct: 81  PMIYNSGKIPLLIILDSITDVRNFGSIVRTSACTGVDAIIIATKNSVTINSDSIKTSSGG 140

Query: 65  ---------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
                      +I  +R   +       +  + A T              E    +  + 
Sbjct: 141 IFKIPICKEKNIIKIIRYLKSF-----GIQ-VIAVT--------------EKTDNICYKF 180

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSIV 174
                   I G E+ G++ + ++L N  +  P +     SLN+S A   +++E +   ++
Sbjct: 181 NYKNPTAFILGSEQKGISKKYLSLCNNTVKLPLIKNSLTSLNVSVACGAILYETIRQRLI 240

Query: 175 SS 176
            S
Sbjct: 241 ES 242


>gi|89073053|ref|ZP_01159600.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89051271|gb|EAR56727.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 170

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              +I L +P+   N+G V RA       Q   V    G   +KA     +   ++ ++ 
Sbjct: 4   TSVIIGLSNPKSPTNVGAVLRAA---GCYQADAV-IYTGTRYDKAAKFQTDTKQMLQTIP 59

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           + S ++  + DL            + K V         L       +    IFG E   +
Sbjct: 60  L-SGVESMLDDL----------PEDMKVVCVDFAEGATLLPHFTHPEKAIYIFGPEDGSI 108

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +    ++ ++  P       +N++ +V ++++
Sbjct: 109 AQDVADKADHVVYVPT---VGCMNLAASVNVVLY 139


>gi|288927754|ref|ZP_06421601.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330588|gb|EFC69172.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 263

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 36/171 (21%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRV----FSN 76
           Q   N+G + R    F +    +V   D     + K   ++  +   I  V+V       
Sbjct: 115 QDPGNLGTIIRLADWFGIR--HVVCSTDTVDVYNPKVVQATMGS---IARVKVSYTPLET 169

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERWGLT 133
           L +A+                      P    ++  + I++ Q      I+ G E  GL+
Sbjct: 170 LLDAL------------------PPSFPVYGTLLDGDNIYTQQLCAYGIIVMGNEGKGLS 211

Query: 134 NEEIALSNAIISFPV----NPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
                     +  P          SLN++ A  ++  E      +   + V
Sbjct: 212 QGVRKRVTHRLLIPSFAIGEERAESLNVANATAIVCAEFRRQGAIGKGEKV 262


>gi|264679352|ref|YP_003279259.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
 gi|262209865|gb|ACY33963.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
          Length = 274

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVR 72
            ++L   Q   N+G + R+   F  TQ+  +       S+K   +   A     ++++  
Sbjct: 128 TVVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHFGLHLVEAA- 186

Query: 73  VFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
              ++ E +  L   +  T++           P   A                 G E  G
Sbjct: 187 ---SVDE-VQGLQVPLVVTSSHQGTLIHEADLPWPCA--------------WAMGHEGQG 228

Query: 132 LTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
           + +  + ++   IS   P      SLN++ A  + + 
Sbjct: 229 VGDALMEMARHRISIAQPGGEE--SLNVAAAAAICLH 263


>gi|153834733|ref|ZP_01987400.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
 gi|148868872|gb|EDL67936.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
          Length = 244

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             AKG +I L       N+G + R    + +  +          + K  S++  +   + 
Sbjct: 97  PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V  +L   + D +               V         +++  FS + + ++ G E 
Sbjct: 157 VSLV--DLPSYLEDANL-------------PVYGAFLEGESVHKTEFSAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+           I+ P      SLN++ A  +++      
Sbjct: 201 HGVREAASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
 gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
          Length = 257

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 11/172 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M     ++       +++L + Q   N+G + R      +T + +        + K   S
Sbjct: 96  MEYTMEEITGKGNPHILVLDNLQDPGNLGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRS 155

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +  A   +     F  +++ I  +  +       + N   V A         ++      
Sbjct: 156 TMGAVYRMP----FLYVEDMIEGIDNL-------KKNNIRVYAAHLDGKNSYDKEDYCGG 204

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              + G E  GL  E    ++  +  P+     SLN + A  ++++E     
Sbjct: 205 TAFLIGNEGNGLRPEVAEKADVWVRIPMEGQAESLNAAVAAAVLMFEASRQR 256


>gi|325002553|ref|ZP_08123665.1| RNA methyltransferase CspR [Pseudonocardia sp. P1]
          Length = 153

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 27/145 (18%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF---- 74
           L  P++  N G V R   N    +L L+ P      E+A   +       +   V     
Sbjct: 6   LHTPEIPPNTGNVIRLAANTG-AELHLIRPLGFSLDERAVRRA--GLDYGELADVVVHAG 62

Query: 75  -SNLKEAIADL-HFIYA-TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                  +AD    +YA TT           +P +                ++FGRE  G
Sbjct: 63  TDAFAAWVADAGARVYAFTTGAPVRYTDVAYSPGDV---------------LLFGRESTG 107

Query: 132 LTNEEIALS--NAIISFPVNPLFPS 154
           L  +    +     ++ P+ P   S
Sbjct: 108 LPADVAGAAWVTGRVALPMRPSNRS 132


>gi|306824475|ref|ZP_07457821.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433262|gb|EFM36232.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 246

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 17/162 (10%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +G  + L D Q   N+G + R       T   +V+ +           S      
Sbjct: 96  LPDFRQGKFLFLEDVQDPGNVGTMIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHF 154

Query: 68  ---IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              I  + + S ++EA      I ATT    +     L+P E             N  ++
Sbjct: 155 HLPIYRMSLASFVEEAKKSNLPILATTLSKDSKDYHELSPIE-------------NFALV 201

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            G E  G+++     ++ ++   +     SLN++ A  ++++
Sbjct: 202 MGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|296125362|ref|YP_003632614.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
           DSM 12563]
 gi|296017178|gb|ADG70415.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
           DSM 12563]
          Length = 237

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 21/165 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANA 64
            L+      + IL       N+G + R  + F  + + +  P+D     +EK    SA A
Sbjct: 82  ALEKKDNPLIFILDSITDVHNLGAIIRNAYFFGSSGIII--PKDNSAPINEKVYEISAGA 139

Query: 65  DCVIDSVRVFSNLK---EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +  + + +NL    E + D              F    A +E      E        
Sbjct: 140 AYHLP-ISIETNLNRTIELMKD------------KGFWIYYASEE-GETSLEDFKFNTPT 185

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            II G E  G+ +     S+  I    +  F SLN+S A  ++ +
Sbjct: 186 AIILGNEHSGVRDILKKNSDGSIIINKSNDFDSLNVSAASAVIAY 230


>gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group]
          Length = 517

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 45/196 (22%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P   +  K PV I L +    +N+G + R+ + F    + L        S     +SA +
Sbjct: 317 PVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGS 376

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFSGQNVG 122
             +I+           +     +    + +  N   VL       AI L+E +  G+   
Sbjct: 377 LELIE-----------LLSCRNMMQFLSSSAENGWRVLGGTVASKAIPLSE-VVPGEPTI 424

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN------------------PLFP----------- 153
           ++ G E  GL          ++  P N                    +            
Sbjct: 425 LVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGADTDTDGGEEGDNYSGNQDMKSFLAV 484

Query: 154 -SLNISQAVLLMVWEC 168
            SLN+S A  ++++  
Sbjct: 485 ESLNVSVAAGVLLYHL 500


>gi|116751047|ref|YP_847734.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116700111|gb|ABK19299.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 252

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 15/166 (9%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRD--GWPSEKARSSSANADCVIDS 70
           + P++IL   Q  +N+G + R+   F   +  +V PRD     +      +A A   +  
Sbjct: 100 REPLVILDCLQDPQNLGAMLRS-ACFLGARGVIV-PRDRSARVTSTVIRIAAGATAYLPV 157

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           ++V +NL  A+  L          +     +      A            +G++ G E+ 
Sbjct: 158 IQV-NNLVRALEQL----------KECGLWIFGLDAQAAQTIYDADLTVPLGLVVGNEQK 206

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           GL        +A++  P +    SLN + +  + + E     ++  
Sbjct: 207 GLRPLVARACDAMVRIPEHGPLQSLNAATSGAIALAEVQRRRLMGK 252


>gi|229820795|ref|YP_002882321.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566708|gb|ACQ80559.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 267

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 19/162 (11%)

Query: 3   PYAPQLQNSAKGPVI---ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKAR 58
           P A  L   A+   +   ++       N+G + R+     +    LV PR   P   ++ 
Sbjct: 109 PAARDLLAGARRVAVLEDVVDHT----NVGAMFRSAAGLGV-DAVLVTPRCADPLYRRSV 163

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             S      +   R+    +E  A +  +     R      + LA  + A+ L+E   S 
Sbjct: 164 RVSMGTVFQVPWTRI----EEWPAGMDEL-----RGAGFTVAALALADDAVTLDELASSP 214

Query: 119 -QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            + + ++ G E  GL    +A ++ ++  P+     SLN++ 
Sbjct: 215 PERLALVLGTEGHGLAPTTVAAADVVVRIPMTGGVDSLNVAA 256


>gi|195053324|ref|XP_001993576.1| GH20351 [Drosophila grimshawi]
 gi|193895446|gb|EDV94312.1| GH20351 [Drosophila grimshawi]
          Length = 1157

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
            N+G +AR      +  L L   +         + S  A+  ++   V      A+A+   
Sbjct: 1018 NLGGLARTCEVLGVKTLILAA-KSLADKSDFTNLSMTAEKTLNIAEVKPT---ALAEFLI 1073

Query: 87   IYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                    ++    V+  ++ A  ++       +   ++ G E+ G+  + IAL +  + 
Sbjct: 1074 ------EKQSLGYKVVGAEQTAQSISFTDFKFPEKCILLLGHEKHGIPVDLIALLDFAVE 1127

Query: 146  FPVNPLFPSLNISQAVLLMVWECMEN 171
             P   +  SLN+     L +WE  + 
Sbjct: 1128 IPQFGVVRSLNVHVTGSLFIWEYCKQ 1153


>gi|195056077|ref|XP_001994939.1| GH13300 [Drosophila grimshawi]
 gi|193892702|gb|EDV91568.1| GH13300 [Drosophila grimshawi]
          Length = 1158

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
            N+G +AR      +  L L   +         + S  A+  ++   V      A+A+   
Sbjct: 1019 NLGGLARTCEVLGVKTLILAA-KSLADKSDFTNLSMTAEKTLNIAEVKPT---ALAEFLI 1074

Query: 87   IYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                    ++    V+  ++ A  ++       +   ++ G E+ G+  + IAL +  + 
Sbjct: 1075 ------EKQSLGYKVVGAEQTAQSISFTDFKFPEKCILLLGHEKHGIPVDLIALLDFAVE 1128

Query: 146  FPVNPLFPSLNISQAVLLMVWECMEN 171
             P   +  SLN+     L +WE  + 
Sbjct: 1129 IPQFGVVRSLNVHVTGSLFIWEYCKQ 1154


>gi|254225060|ref|ZP_04918674.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125622447|gb|EAZ50767.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 257

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + ++ +          + K  S++  +   + 
Sbjct: 110 PKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQ 169

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L   +A  +               V       + +++  F  + + ++ G E 
Sbjct: 170 VSQV--DLPYYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 213

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 214 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 255


>gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta]
          Length = 420

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E       
Sbjct: 349 APAAVVIGGETDGVSVESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRG 408

Query: 175 SSEKNVKEQNT 185
            +E   ++++ 
Sbjct: 409 RAEHLSRDRSH 419


>gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681]
 gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681]
          Length = 262

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L       V++L   Q   N+G + R+        + L +      + K   S+  +  
Sbjct: 108 ALLEQPDALVMVLDGVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLF 167

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +    +  +L+E +           + ++    +++    A +    I    +  ++ G
Sbjct: 168 HLP--VIEGSLEEFL----------PQAKSKGARLISTSLDASLSCYTIDLRVSTWLVIG 215

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            E  G++     + +  +  P+     SLN + A  ++++E M   
Sbjct: 216 NEGQGISAATARMVDESVFIPMQGQAESLNAAMASTVLLFEAMRQR 261


>gi|270292099|ref|ZP_06198314.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
 gi|270279627|gb|EFA25469.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
          Length = 252

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR--DGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
           Q   N+G + R       T   +V+ +  D +  +  RS   +   +       +   E 
Sbjct: 117 QDPGNVGTMIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPVATFVEG 175

Query: 81  IADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                  I ATT    +     L+P E             +  ++ G E  G+++     
Sbjct: 176 AKKSDLPILATTLSRESKDYRELSPLE-------------DFVLVMGNEGQGISSVMAES 222

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++ ++   +     SLN++ A  ++++
Sbjct: 223 ADQLVHISMKGRAESLNVAVAAGILMF 249


>gi|255023881|ref|ZP_05295867.1| rRNA methylase [Listeria monocytogenes FSL J1-208]
          Length = 131

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 24/51 (47%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            + ++ G E  G++ E     +  +  P+     SLN++ A  ++++   +
Sbjct: 81  TLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 131


>gi|261366641|ref|ZP_05979524.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
           variabile DSM 15176]
 gi|282571463|gb|EFB76998.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
           variabile DSM 15176]
          Length = 260

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 35/177 (19%)

Query: 13  KGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVID 69
           + P ++L    +   N+G + R+ +      + +  P+ G    +     +SA A   + 
Sbjct: 105 EAPFLVLCDGVEDPHNLGAIIRSAYLCGAHGVVI--PKRGGVGVTGTVMKASAGAAARLP 162

Query: 70  SVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             RV +NL +AI  +     F+Y                      L+    SG  V ++ 
Sbjct: 163 VARV-TNLAQAIRTIKEHNVFVYC--------------ADLGGAPLSRTDLSG-PVALVL 206

Query: 126 GRERWG---LTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECMENSIVS 175
           G E  G   LT     L +A ++  + P       S N+S A  ++ ++ +      
Sbjct: 207 GSEGGGPGALTR---KLCDAAVTLEMAPGQATGVDSYNVSVAAGILCYDVLRRRTAQ 260


>gi|157818915|ref|NP_001101752.1| hypothetical protein LOC360569 [Rattus norvegicus]
 gi|149053441|gb|EDM05258.1| similar to putative RNA methyltransferase (predicted) [Rattus
           norvegicus]
          Length = 418

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
               ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E    
Sbjct: 347 APAALVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQ 403


>gi|74224181|dbj|BAE33706.1| unnamed protein product [Mus musculus]
          Length = 321

 Score = 41.6 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N+G V R+     + +  + + R+  P +     +SA A  V+D   VF+ 
Sbjct: 147 VLEGLQDPRNLGAVMRSAHFLGVDR-VITSQRNSCPLTPVVSKASAGAMEVMD---VFAT 202

Query: 77  LKEAIADLHFIYATTARNRNN-FKSVLAPK-----EAAIVLNERIFSGQNVGIIFGRERW 130
               +       A               P+     +  I         +   ++ G E  
Sbjct: 203 PD--LPGFLQAKAPAGGGSWWAQWGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGS 260

Query: 131 GLTNEEIALSNAIISF------PVNPLFPSLNISQAVLLMVW 166
           GL+ E  A    +++       P  P   SLN+S A  +++ 
Sbjct: 261 GLSQEVFASCQLLLTILPRRHLP--PGLESLNVSVATGILLH 300


>gi|325928467|ref|ZP_08189658.1| rRNA methylase [Xanthomonas perforans 91-118]
 gi|325541184|gb|EGD12735.1| rRNA methylase [Xanthomonas perforans 91-118]
          Length = 356

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 29/172 (16%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKA 57
           P    L    +GPV+ L    V      N G + R+  +F +  L L      G     A
Sbjct: 191 PLQEWLAALPQGPVLALWLDGVG--NPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAA 248

Query: 58  RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           R +   A+ V      D+    + L++A     F  A T  +             A  L 
Sbjct: 249 RVAEGGAEAVPLVQLPDTATAMAQLRQA----GFAIAATLVDGGQ-------DVFAAALP 297

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +R+        + G E  G+        +  +S   +    SLN++ A  + 
Sbjct: 298 QRLV------YVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 343


>gi|241743103|ref|XP_002414182.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215508036|gb|EEC17490.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 156

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEA 80
           Q   N G V R+ + F + ++          S     +S+ A  V+D  S++  +   +A
Sbjct: 15  QDPMNFGAVLRSSYYFGVQKVFTTRTDSCRLSPVVSKASSGALEVMDLYSLQSPAEFLQA 74

Query: 81  IADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           +    + +  T    ++       P+     +     + +   +I G E  G+  E  A+
Sbjct: 75  LKSKGWWVVGTAGVKQDGPFEA-GPRSDLSWVL--PPTDKPAILIVGNENQGMHPELGAV 131

Query: 140 SNAIISF-PV--NPLFPSLNISQA 160
            ++++S  P   + L  SLN+S A
Sbjct: 132 CDSVLSISPAASSDLIGSLNVSVA 155


>gi|222152573|ref|YP_002561748.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113384|emb|CAR41028.1| SpoU rRNA Methylase family protein [Streptococcus uberis 0140J]
          Length = 245

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 27/52 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + +    +  ++ G E  G+++E  AL+N ++   +     SLN++ A  ++
Sbjct: 189 KALPQNDSFVLVMGNEGRGISDEMAALANQLVHINMPGQAESLNVAVAAGIL 240


>gi|15079419|gb|AAH11550.1| RNA methyltransferase like 1 [Homo sapiens]
 gi|312153368|gb|ADQ33196.1| RNA methyltransferase like 1 [synthetic construct]
          Length = 420

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E +G++ E + L+ +     +  PV P   SLN + A  ++++E       
Sbjct: 349 APAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRG 408

Query: 175 SSEKNVKEQNT 185
            +E   ++++ 
Sbjct: 409 RAEDLSRDRSY 419


>gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
 gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
          Length = 246

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 58/165 (35%), Gaps = 20/165 (12%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
                KG  ++L   Q   N+G + R     +   + L +      + K   ++  A   
Sbjct: 96  TPERLKGRFVLLDRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIRATQGALFH 155

Query: 68  IDSVRVFSNLK---EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +       +L    EA+ +    +Y T+   ++                ++  S +   +
Sbjct: 156 LP--VYMGDLVTWIEALKESGIPVYGTS--LQDATPH------------DQFHSQEQFAL 199

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + G E  G+ +  +  +   +    N    SLN+S A  ++++  
Sbjct: 200 LLGNEGEGVQSHLLDAATENLFIRQNRKAESLNVSVAAGILLFAL 244


>gi|183602741|ref|ZP_02964104.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683159|ref|YP_002469542.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191493|ref|YP_002968887.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196898|ref|YP_002970453.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183217979|gb|EDT88627.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620809|gb|ACL28966.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249885|gb|ACS46825.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251452|gb|ACS48391.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289177618|gb|ADC84864.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295794485|gb|ADG34020.1| hypothetical protein BalV_1432 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 269

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 29/174 (16%)

Query: 27  NIGMVARAMWNFNLTQLRLVNP----RDGWPSEKARSSSAN---------------ADCV 67
           NIG + R    F   ++ +V P    R G    +      +               A   
Sbjct: 91  NIGSMVRTANAFTANRVHIVGPHKWNRKGALMTELYQHVVHHPSIRACVDDWHARIAQER 150

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG--------- 118
            ++ +     + A        A  AR     +  L   + A V+   I  G         
Sbjct: 151 TEARQRIETAQTAAQAGVLSPADAARELVYARHDLNIAQNAKVIAMDIIDGAVPMETYRF 210

Query: 119 -QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +   ++FG E  GL+ + + L++ ++         S+N   A  + +   +  
Sbjct: 211 PERCLLLFGAEGPGLSKKALELADDVVYISQFGSVRSINAGAAAAVTMHAWIAQ 264


>gi|30047088|gb|AAH50614.1| RNA methyltransferase like 1 [Homo sapiens]
          Length = 420

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E +G++ E + L+ +     +  PV P   SLN + A  ++++E       
Sbjct: 349 APAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRG 408

Query: 175 SSEKNVKEQNT 185
            +E   ++++ 
Sbjct: 409 RAEDLSRDRSY 419


>gi|33861855|ref|NP_893416.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640223|emb|CAE19758.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 246

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 27/165 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA------------- 62
           +++L   Q   N+G + R      ++++ L       P  +    ++             
Sbjct: 79  ILVLDRIQDPGNMGNLFRTALAAGVSKILLAG--GAHPLGQKVLRASSGSVFHLPFKRFD 136

Query: 63  -NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              + +I+S  + S+L +   +   I +T++ N+N +KS     E        I   +  
Sbjct: 137 GGEEEIINS--LLSSLDQFSKNGFQIISTSSHNKNLYKSQKPYWE--------IDWSKPT 186

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS-QAVLLMV 165
            +I G E  G+        N  I+ P + L  SLN++  AV L++
Sbjct: 187 ALILGNEGNGIHKRIQEAFNETITIPHSELVESLNVACVAVPLLL 231


>gi|322499488|emb|CBZ34561.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 519

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 2   TPYAPQLQNSAKGPVI----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
            P A  L +      +    +LV  ++  N+G + RA  +       LV+     P+++ 
Sbjct: 266 PPVARPLHDPFGHHAVGAMLVLVGLRIPSNVGTLLRAAADMGYDAAVLVS--CADPTQEK 323

Query: 58  RSSSANADCVIDSVRVFSN 76
              +++   +  ++R++  
Sbjct: 324 VLRASDGTALSPTLRIYET 342


>gi|152991818|ref|YP_001357539.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151423679|dbj|BAF71182.1| RNA methyltransferase, TrmH family [Sulfurovum sp. NBC37-1]
          Length = 234

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 52/183 (28%)

Query: 4   YAPQLQNSAKGP-VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
             P L +  +   ++IL       NIG + R+                        + + 
Sbjct: 77  EQPSLSDVKREDFLVILDGLTDVGNIGAIVRS------------------------AYAL 112

Query: 63  NADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAP---------KEAAIVLN 112
            AD VI        L  EAIA       T++    +   +L P          +    L 
Sbjct: 113 GADAVI--ATGVKQLNFEAIAR------TSSGALLDMPFLLIPNILDVCNELHQVGFKLY 164

Query: 113 ERIFSGQNV---------GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
                G  V          +I G E  GL+ +     + +IS  +   F SLN+S A  +
Sbjct: 165 GAAMEGDAVQLMEFERKRALILGSEGKGLSKKAQGKIDHLISIEMKHAFDSLNVSAAAAI 224

Query: 164 MVW 166
           ++ 
Sbjct: 225 LIH 227


>gi|62897359|dbj|BAD96620.1| RNA methyltransferase like 1 variant [Homo sapiens]
          Length = 420

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E +G++ E + L+ +     +  PV P   SLN + A  ++++E       
Sbjct: 349 APAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRG 408

Query: 175 SSEKNVKEQNT 185
            +E   ++++ 
Sbjct: 409 RAEDLSRDRSY 419


>gi|294811612|ref|ZP_06770255.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326440200|ref|ZP_08214934.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324211|gb|EFG05854.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 272

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 12/135 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           NIG + R+     +    L++P    P   ++   S  A   +   R+     + +  + 
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARL-DGWPKGLEGV- 188

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                  R        L P E A  ++E        V ++ G E  GL+   +  ++  +
Sbjct: 189 -------REAGFTLLALTPHEKAAPIDEVAPHRLDRVALMLGAEGEGLSRRALMAADEWV 241

Query: 145 SFPVNPLFPSLNISQ 159
             P+     SLN+  
Sbjct: 242 RIPMAHGVDSLNVGA 256


>gi|270296788|ref|ZP_06202987.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480146|ref|ZP_07939256.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|270272775|gb|EFA18638.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903693|gb|EFV25537.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 253

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 33/163 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSN-LKEA 80
           Q   N+G + R    F +      +P      + K   ++      I  VR+    L E 
Sbjct: 113 QDPGNLGTIVRLADWFGIEH-IFCSPNTVDIYNPKTVQATMGG---IARVRLHYTPLPEF 168

Query: 81  IADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           I  L    +Y T     N +   L+               +N  I+ G E  G+  E  A
Sbjct: 169 IRSLKDIPVYGTFLDGENMYGQPLS---------------KNGLIVMGNEGNGIGKEVEA 213

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIV 174
           L N  +  P    +P       SLN++ A  ++  E    + +
Sbjct: 214 LINRKLYIP---NYPASRETSESLNVAIATAVVCAEFRRQAAL 253


>gi|332072055|gb|EGI82542.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17570]
          Length = 212

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 39/156 (25%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 77  QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 133

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 134 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 171

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             G++      ++ ++   +     SLN++ A  ++
Sbjct: 172 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGIL 207


>gi|325978970|ref|YP_004288686.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178898|emb|CBZ48942.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 246

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 30/175 (17%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P  P L +   G  +IL D Q   N+G + R      L    L++ +      +    S 
Sbjct: 92  PSLP-LADLKAGRYLILEDVQDPGNVGTMIRTADAAGLDG-VLISEKSADIYNQKTLRSM 149

Query: 63  NAD---------CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE 113
                        V ++ +   NL         + ATT    +                +
Sbjct: 150 QGSHFHLPIWRTDVYEACQKLQNLD------VPLIATTLSKESVD-------------YK 190

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            +    +  ++ G E  G++      ++ +    +     SLN++ A  +++++ 
Sbjct: 191 TVEHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 245

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 25/166 (15%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAM--WNFN---LTQLRLVNPRDGWPSEKARSS 60
             L  S  G  +IL D Q   N+G + R     NF+   L++       D +  +  RS 
Sbjct: 93  QALPTSYAGKYLILEDIQDPGNLGTIIRTADAANFDGVFLSE----KSADIYNQKTLRSM 148

Query: 61  SANADCV-IDSVRVFSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             +   + I    ++  + +A+      + ATT    +     L+ +             
Sbjct: 149 QGSHFHLPIWRTDIYQ-VSQAMQQQKIPVLATTLSQDSIDYKDLSAR------------- 194

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            ++ ++ G E  G++ E  AL++ +I   +     SLN++ A  ++
Sbjct: 195 SSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGIL 240


>gi|194466627|ref|ZP_03072614.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
 gi|194453663|gb|EDX42560.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
          Length = 258

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 23/155 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS-NLKEA 80
           Q   N+G + R       T   +V  R       K   S   +   +   ++F  +L++ 
Sbjct: 119 QDPGNVGTMVRTADAAGFTG-VVVGQRSADLFGPKVVRSMQGSQFHL---QMFEGDLRKW 174

Query: 81  IADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           I D       +Y T           L P+       +    G    +I G E  G++++ 
Sbjct: 175 IDDFKSTNAPVYGT----------QLNPQAKNFRTVD---PGDTFALIMGNEGQGMSDDL 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++ +   +  P+     SLN++ +  +++++  +N
Sbjct: 222 LSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQN 256


>gi|71654093|ref|XP_815672.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880745|gb|EAN93821.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1735

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query: 4    YAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
            +   L+   + P+I+L    Q   N+  + R    F + +  +V+ +  +      +++ 
Sbjct: 1570 HPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTVEK-VVVSDQAVFAHPHFVAAAR 1628

Query: 63   NAD-CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQN 120
            +A+  +     +  NL E +             R +  +++  ++ A  ++   +   + 
Sbjct: 1629 SAELWMPWEAVMAKNLPEYL----------GSLRQDGYTLIGIEQTAGSVSMASYRFPER 1678

Query: 121  VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
              I+ G E  G+  E + + +  +  P   L  SLN+     L+++E     ++ 
Sbjct: 1679 AAILLGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHLME 1733


>gi|210623621|ref|ZP_03293947.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
 gi|210153491|gb|EEA84497.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
          Length = 264

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           G  V ++ G E  G+ +     S+ ++  P+     SLN + +  ++++E  ++
Sbjct: 209 GNKVALVIGNEANGIDDVIAENSDLLVKIPIYGSAESLNAAISSAILMYEIKKS 262


>gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 296

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   FN     ++  +   P+E    +  ++ A  +I  ++V +
Sbjct: 151 VLDQVTDPHNVGAIMRSAVAFNAG--AVITTQRHSPTESGVLAKSASGALELIPYIQV-T 207

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +  +T    +                E  FSG+ V ++ G E  GL  +
Sbjct: 208 NLADALGELHKLGFSTIGLDS----------EGPAALEGTFSGEKVALVLGSEGKGLRQK 257

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                NA+    +     SLN+S 
Sbjct: 258 TRETVNALARLDMPGAIKSLNVSN 281


>gi|118088202|ref|XP_419559.2| PREDICTED: similar to TAR RNA loop binding protein [Gallus gallus]
          Length = 1328

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 23/162 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++
Sbjct: 1182 PTNLGGLCRTSEIFGASALV-VGSLHYVQDKQFQHLSVSAEQWLPLVEVKPSQLVDYLQQ 1240

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + +       TA++ +       P              +   ++ G E  G+    I
Sbjct: 1241 KKTEGYTAIGVEQTAKSYDLT-EYCFP--------------EKSLLLLGNEHEGIPANLI 1285

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               +  +  P   +  SLN+  +  L++WE     ++  ++ 
Sbjct: 1286 HHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQVIKHKQQ 1327


>gi|268317136|ref|YP_003290855.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
           DSM 4252]
 gi|262334670|gb|ACY48467.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
           DSM 4252]
          Length = 252

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
             V    +   + + ++ G E  GL        + ++S P+     SLN+S A  ++++ 
Sbjct: 187 GEVSVWEMDWHRPLVLVLGNEGRGLRPGVAQACDLLVSIPLRGPVESLNVSVAAGILLFA 246

Query: 168 CMENS 172
                
Sbjct: 247 ATRTR 251


>gi|308807789|ref|XP_003081205.1| unnamed protein product [Ostreococcus tauri]
 gi|116059667|emb|CAL55374.1| unnamed protein product [Ostreococcus tauri]
          Length = 308

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF 152
           R    + +VL   E      E     +N   + G E  GL    +      ++ P     
Sbjct: 199 RRNTPYGAVLVAVEMGGEPLETFEHPKNCVYVLGSEDTGLNTSMLRACRHHVALPATRT- 257

Query: 153 PSLNISQAVLLMVW 166
            S N++    ++++
Sbjct: 258 ASYNVAVTGAILMY 271


>gi|260944646|ref|XP_002616621.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
 gi|238850270|gb|EEQ39734.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
          Length = 1423

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 30/152 (19%)

Query: 27   NIGMVARAMWNFN-----LTQLRLVNPRDGWPSEKARSSSANADCV-----IDSVRVFSN 76
            N+G + R           L  L++ N      + + ++ +  AD       +   ++   
Sbjct: 1285 NLGGICRLCDVLGAGLMTLHDLKIKN------NAQFKTVAVTADYWMPMIEVKPHQIVEY 1338

Query: 77   LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
            L +  AD + +              L   + ++VLN+ +   +   I+ GRE+ G+  E 
Sbjct: 1339 LHQKKADGYTLIG------------LEQTDKSVVLNKDLQFPKKSLILLGREKEGIPGEL 1386

Query: 137  IALSNAIISFPVNPLFPSLNI--SQAVLLMVW 166
            +A  +  +      +  S+NI  + AV++  +
Sbjct: 1387 LAELDLCVEIKQVGIVRSMNIQTATAVIVHAY 1418


>gi|222149594|ref|YP_002550551.1| RNA methylase [Agrobacterium vitis S4]
 gi|221736576|gb|ACM37539.1| RNA methylase [Agrobacterium vitis S4]
          Length = 279

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 18/176 (10%)

Query: 2   TPYAPQLQNSAKGPVIILVDP--QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
            P A QL  S     ++LV       +N+G + R    F    + L          KA  
Sbjct: 111 APDATQLIASLPQRALVLVGCGISNHDNVGAMFRNATGFCADAVLLDETSCDPLYRKALR 170

Query: 60  SSANADCVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIV--LNERI 115
            S  +   +   R  S +    A+    F+ A            L P     +  +   +
Sbjct: 171 VSVGSVLTMPYAREHSAIALLSALDAAGFLVAA-----------LTPSGTTEIGDIASGL 219

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              Q + ++ G E  GL  + +A     +    +P   SLN+  A  + +      
Sbjct: 220 GGQQRLALVVGTEGEGLPADVLARF-MTVRIAQSPQLDSLNLGTASGIALHSAARA 274


>gi|157870265|ref|XP_001683683.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126749|emb|CAJ05174.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 518

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 2   TPYAPQLQNSAKGPVI----ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57
            P A  L +      +    +LV  ++  N+G + RA  +       LV+     P+++ 
Sbjct: 267 PPAAHPLHDPFGHHAVGAMLVLVGLRIPSNVGTLLRAAADMGYDAAVLVS--CADPTQEK 324

Query: 58  RSSSANADCVIDSVRVFSN 76
              +++   +  ++R++  
Sbjct: 325 VLRASDGTALSPTLRIYET 343


>gi|296284434|ref|ZP_06862432.1| tRNA/rRNA methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 267

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 16/149 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAIA 82
             N+G + R         L L++        +A  +S  A     +   R    L     
Sbjct: 130 PGNLGTMLRTADAVGAGGLILIDDCADPFGVEAVRASMGAIFTQNLARARWEEFLPWLRQ 189

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A + R          P   A   +          ++ G E  GL        + 
Sbjct: 190 GPGQLVAASLREA-------VPYRGAPYAS-------PCFVMVGNESQGLPEAYETACDL 235

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ P+     SLN + A  ++ +E + +
Sbjct: 236 RVTMPMRGRADSLNAAVAAAVLAYEVLAS 264


>gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
          Length = 261

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 28/52 (53%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + + I  G E  G++++ + +S+  +  P+     SLN+  A  +M++E + 
Sbjct: 207 EKLIIAVGNEGNGISDKIVDISDTKVKIPMPGNVESLNVGVAAAIMMFEYVR 258


>gi|329962850|ref|ZP_08300735.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328529407|gb|EGF56320.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 253

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 27/158 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAI 81
           Q   N+G + R    F +      +P      + K   ++      I  V++      A+
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDAYNPKTVQATMGG---IARVKLHYTPLPAL 167

Query: 82  ADLHF---IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   +Y T     N +   L+               +N  I+ G E  G+  E   
Sbjct: 168 IGSLTDIPVYGTFLDGENIYGQPLS---------------ENGLIVMGNEGNGIGEEVRQ 212

Query: 139 LSNAIISFP---VNPLFP-SLNISQAVLLMVWECMENS 172
           L N  +  P    N     SLN++ A  ++  E    +
Sbjct: 213 LINRKLYIPNYPANRETSESLNVAIATAVVCAEFRRQA 250


>gi|229552522|ref|ZP_04441247.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539895|ref|YP_003174394.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|229314074|gb|EEN80047.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151571|emb|CAR90543.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 253

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 11/168 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   A QL +   G  ++L   Q   N+G + R      +  +   N        K   +
Sbjct: 94  MPRQAGQLPDPLSGQFLMLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRA 153

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +      VR+ S      A L  +    A  R       +           I     
Sbjct: 154 MQGSQF---HVRIVS------AKLMPVI--KALQRAGIPVYGSELNDKAKSYRSIQPSAQ 202

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            G++ G E  G+    +  ++  +  P+     SLN++ A  +M++  
Sbjct: 203 FGLVVGNEGNGMDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250


>gi|114799577|ref|YP_759058.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739751|gb|ABI77876.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 269

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 11/150 (7%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L        +IL +    +N+G   R    F    + L          KA   S+ A   
Sbjct: 115 LPKDGPSTALILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPLYRKAIRVSSGAALW 174

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +          +       I A  A     +   L P+  A  L   +   + V ++ G 
Sbjct: 175 LP-------FSQGGTGADLIAAAEAAGHEVW--ALTPRSDAAPLP-SLKVPERVALLMGA 224

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNI 157
           E  GL  E IA +   +   +   F S+N+
Sbjct: 225 EGPGLPAEMIARA-RPVRIAMTEGFDSVNV 253


>gi|8922534|ref|NP_060616.1| RNA methyltransferase-like protein 1 [Homo sapiens]
 gi|74734265|sp|Q9HC36|RMTL1_HUMAN RecName: Full=RNA methyltransferase-like protein 1
 gi|19749337|gb|AAG17988.2|AF177344_1 unknown [Homo sapiens]
 gi|7022703|dbj|BAA91694.1| unnamed protein product [Homo sapiens]
 gi|119611048|gb|EAW90642.1| RNA methyltransferase like 1 [Homo sapiens]
 gi|307686131|dbj|BAJ20996.1| RNA methyltransferase like 1 [synthetic construct]
          Length = 420

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
               ++ G E +G++ E + L+ +     +  PV P   SLN + A  ++++E       
Sbjct: 349 APAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRG 408

Query: 175 SSEKNVKEQNT 185
            +E   ++++ 
Sbjct: 409 RAEDLSRDRSY 419


>gi|218295896|ref|ZP_03496676.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
           Y51MC23]
 gi|218243634|gb|EED10162.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
           Y51MC23]
          Length = 238

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 19/167 (11%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFN----LTQLRLVNPRDGWPSEKARSSSANADCVI 68
              ++ L       N G + R+         L++ R    R    S  A  +SA A   +
Sbjct: 87  PPLLVALDGITDPRNYGAMIRSALALGAHGVLSEER----RAAPLSPLALKASAGAALKL 142

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             +RV  NL  A+ +L          +     V             +   + + ++ G E
Sbjct: 143 PVIRV-KNLPRALKEL----------KERGVWVYGLDLKGEKAPRELDFKRPLALVVGSE 191

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
             G+        + +   P+ P   SLN S A+ + +++      V+
Sbjct: 192 GEGMRRLVRESCDELFRIPIRPEAESLNASVALSIALYQAALARGVA 238


>gi|311746529|ref|ZP_07720314.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
 gi|126575429|gb|EAZ79761.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
          Length = 249

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 16/153 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
              VI L D +   N+G + R    + +  L   +    + + K   SS  +   ++   
Sbjct: 104 NELVIALDDVRDPGNLGTIIRIADWYGIKNLLFSSQTADFYNPKVIQSSMGSFTRVNF-- 161

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            + +LKE                     +         ++E       V ++ G E  G+
Sbjct: 162 YYGDLKEVFE-------------EWGVPIYGAYLGGSNIHELKSPAAGV-LLMGNESNGI 207

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           + E     +  ++ P +    SLN++ A  ++ 
Sbjct: 208 SKELEPFVSKKLTIPGSGEAESLNVAIATAILC 240


>gi|300778322|ref|ZP_07088180.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300503832|gb|EFK34972.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 241

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 21/162 (12%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
           K   ++L   Q   N+G + R    F + Q+          + K   ++  +   ++   
Sbjct: 96  KNIQLVLDGIQDPGNLGTIIRLADWFGIEQVICSEDTVDVYNPKVIQATMGSFTRVN--V 153

Query: 73  VFSNLKEAIADLHFI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
           V+++L E ++    +   T               +            + + +I G E  G
Sbjct: 154 VYTDLVEYLSKTENVNIGT---------------DMEGENIYTFEKPEKINLILGNEGNG 198

Query: 132 LTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMVWECME 170
           +  E   L    IS P    +    SLN+S A  +++ +   
Sbjct: 199 MRPETEKLLQKSISIPRFGKSQSTESLNVSMAAGIILGQLFS 240


>gi|182684908|ref|YP_001836655.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
 gi|182630242|gb|ACB91190.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           CGSP14]
          Length = 252

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 117 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 173

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 174 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 211

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 212 GQGISPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 251


>gi|168492052|ref|ZP_02716195.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|307128172|ref|YP_003880203.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
 gi|183573736|gb|EDT94264.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|301800735|emb|CBW33383.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|306485234|gb|ADM92103.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
          Length = 246

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 245


>gi|149021923|ref|ZP_01835910.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929961|gb|EDK80949.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP23-BS72]
          Length = 236

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 101 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 157

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 158 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 195

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 196 GQGISPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 235


>gi|56480145|ref|NP_708432.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|56383696|gb|AAN44139.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 345

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-ANADCV--IDSVRVFSNLKE 79
               N+G + R+  +F +    +V       S  A  ++   A+ V  I    + + L +
Sbjct: 206 SNPHNLGGMMRSCAHFGVKG-VVVQDAALLESGAAIRTAEGGAEHVQPITGHNIVNVLHD 264

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                + +  T++             E    L +     + V ++ G+E  GL +     
Sbjct: 265 FRQAGYSVVNTSS-------------EQGTPLFKTSLPAKMV-LVLGQEYEGLPDAARDP 310

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++  +          LNIS A  +++ E    
Sbjct: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342


>gi|33862607|ref|NP_894167.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634523|emb|CAE20509.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
          Length = 275

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 7/177 (3%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           PQ  N AK  V+ L   Q   N+G + R      +  + L        S K   +SA A 
Sbjct: 102 PQAVNQAKF-VLALDRLQDPGNLGTLLRTALAAEVEAVWL-ASGADPLSPKVLRASAGAI 159

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN---ERIFSGQNVG 122
             +   R  S+ +EA+  L       A +     + + P  +A        ++   +   
Sbjct: 160 LQLPYQRFGSSGQEAVEQLAEQLEWAASHGLQVVATMVPGSSAAHSCLPYWQLDWRKPTV 219

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL-MVWECMENSIVSSEK 178
           ++ G E  GL     A     ++ P +    SLN++ AV + ++ E    ++  S +
Sbjct: 220 LVLGNEGSGLHPRLQACCTDCVTLPHSAAVESLNVA-AVAVPLLLERRRATMTFSTQ 275


>gi|312882046|ref|ZP_07741800.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370341|gb|EFP97839.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 244

 Score = 41.2 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 23/165 (13%)

Query: 4   YAPQL-QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
             PQL +  A+G +I L       N+G + R    + +  +          S K  S++ 
Sbjct: 90  EIPQLIEPEAEGFMIALDGVSDPGNLGTIIRLADWYGIKHIVASEDCADPYSPKTISATM 149

Query: 63  NADCVIDSVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +       RV      L + +   H               +         ++   FS Q
Sbjct: 150 GS-----FARVTVTQLNLPDYLKHAHL-------------PIYGAFLDGENVHNVSFSAQ 191

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            + ++ G E  G+  +        I+ P      SLN++ A  ++
Sbjct: 192 GI-LLMGSESHGIREQASQHVTNKITIPSFGGAESLNVAMAAGII 235


>gi|237739099|ref|ZP_04569580.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423699|gb|EEO38746.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 113

 Score = 41.2 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 29/52 (55%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +   +IFG E  G+ +E +++S+     P+     SLN++ A  +++++  E
Sbjct: 57  EKNAVIFGNEGRGICDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFRE 108


>gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           amycolatum SK46]
 gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           amycolatum SK46]
          Length = 314

 Score = 41.2 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 17/169 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G ++ L +     N+G V R++  F    + +   R    +  A  +SA     +   R
Sbjct: 160 PGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSAAITGVAWRTSAGTAARLPVAR 219

Query: 73  ---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              +  +LK+               +     ++          +       V ++ G E 
Sbjct: 220 ATNMVRSLKQ--------------FQKAGYQIVGLDAGGDHTLDTYDGTTPVVVVVGSEG 265

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            GL+       + I+S P+     SLN S A  + + E        S +
Sbjct: 266 KGLSRLVRDTCDTIMSIPMTGWVESLNASVAAGVTLSEFARQRRAKSSQ 314


>gi|297486581|ref|XP_002695756.1| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
 gi|296476912|gb|DAA19027.1| RNA methyltransferase like 1 [Bos taurus]
          Length = 413

 Score = 41.2 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMEN 171
               ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E    
Sbjct: 350 APAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQ 406


>gi|154687000|ref|YP_001422161.1| YsgA [Bacillus amyloliquefaciens FZB42]
 gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42]
          Length = 248

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 20/151 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + L        + K   S+  +   I  ++    L E  A
Sbjct: 113 QDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPILKRP--LDEFTA 170

Query: 83  DL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +L      IY T   N   ++SV                 ++  +I G E  G+    + 
Sbjct: 171 ELKSQGVAIYGTALENGAAYQSV--------------KPEESFALIVGNEGAGVDAGLLQ 216

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            ++  +  P+     SLN++ A  ++V+   
Sbjct: 217 KTDLNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|242037305|ref|XP_002466047.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
 gi|241919901|gb|EER93045.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
          Length = 1767

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 19/173 (10%)

Query: 4    YAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
             A  ++ S +  +++  LVD ++  N+  + R    F    L  V  +     ++ R  S
Sbjct: 1602 AAETIKQSRQELIVVASLVD-RIP-NLAGLTRTCEVFRAAGLV-VADKSVLQDKQFRLIS 1658

Query: 62   ANADCVIDSVRV-FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI--VLNERIFSG 118
              A+  +    V   ++K  +           R R    SV+  ++ A    L+  +F  
Sbjct: 1659 VTAEKWLPVTEVPVDSVKAYLE----------RKRGEGYSVIGLEQTAHSRPLDGFVFPD 1708

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            + V ++ GRE+ G+  + I + +A +  P   +  SLN+  +  + VWE    
Sbjct: 1709 RTV-LVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWEYTRQ 1760


>gi|262276699|ref|ZP_06054495.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HIMB114]
 gi|262225137|gb|EEY75593.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HIMB114]
          Length = 233

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 25/143 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-SSSANADCVIDSVRVFSN------LKE 79
           NIG + R    FN+ Q  ++N +D   S      +++    +I+   +F         KE
Sbjct: 100 NIGAIIRTASAFNIKQ-IIINKKDIVTSNLLLNKTASGGMDLIN---IFQTSNIINLFKE 155

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                ++ Y     ++  FK  L                +    IFG E  GL       
Sbjct: 156 LKKKDYWFYGFDGNSKTIFKKNLL--------------SEKNVFIFGSEGKGLREIIKKN 201

Query: 140 SNAIISFPVNPLFPSLNISQAVL 162
            + ++   +N    SLN+S +V 
Sbjct: 202 CDHLVRININNKVDSLNVSASVA 224


>gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 296

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   FN     ++  +   P+E    +  ++ A  +I  ++V +
Sbjct: 151 VLDQVTDPHNVGAIMRSAVAFNAG--AVITTQRHSPTESGVLAKSASGALELIPYIQV-T 207

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +  +T    +   + L          E  FSG+ V ++ G E  GL  +
Sbjct: 208 NLADALGELHKLGFSTIGLDSEGPAPL----------EGTFSGEKVALVLGSEGKGLRQK 257

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                NA+    +     SLN+S 
Sbjct: 258 TRETVNALARLDMPGSIKSLNVSN 281


>gi|148544445|ref|YP_001271815.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|184153809|ref|YP_001842150.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363127|ref|ZP_03847262.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682767|ref|ZP_08162283.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148531479|gb|ABQ83478.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|183225153|dbj|BAG25670.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071845|gb|EEI10133.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324977117|gb|EGC14068.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 258

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 23/155 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFS-NLKEA 80
           Q   N+G + R       T   +V  R       K   S   +   +   ++F  +L++ 
Sbjct: 119 QDPGNVGTMVRTADAAGFTG-VVVGQRSADLFGPKVVRSMQGSQFHL---QMFEGDLRKW 174

Query: 81  IADLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
           I D       +Y T           L P+       +    G    +I G E  G++++ 
Sbjct: 175 IDDFKSINAPVYGT----------QLNPQAKNFRTVD---PGDTFALIMGNEGQGMSDDL 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++ +   +  P+     SLN++ +  +++++  +N
Sbjct: 222 LSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQN 256


>gi|300769739|ref|ZP_07079621.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300492647|gb|EFK27833.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 261

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 24/156 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---- 73
           IL + +   N+G + R         + +   R    +     +S  A   +   RV    
Sbjct: 114 ILDNIEDPHNLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLV 173

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L+EA     +I+ T                      +   SG  VG+I G E  G
Sbjct: 174 QTVKQLQEA---GLWIFGT--------------DMNGTDYRQWDASGA-VGLIIGNEGKG 215

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           ++       + +++ P+     SLN S A  L++++
Sbjct: 216 ISPLLKKSVDEMLTIPMIGHVQSLNASVAASLLIYQ 251


>gi|260220953|emb|CBA29034.1| hypothetical protein Csp_A10120 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 256

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 21/154 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            +IL   Q   N+G + R+   F   Q L L      W S K   +   A   +   R+ 
Sbjct: 114 TVILDRVQDAGNVGSILRSAGAFGFRQVLALKGSAALW-SPKVLRAGMGAHFGL---RLI 169

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L+  + DL                ++        L +++          G E  G++ 
Sbjct: 170 EGLE--LQDLD----------ALKVPLVVTSSHQGDLVQKLDLPHPCAWAMGHEGQGVSE 217

Query: 135 EEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
             +A ++       P      SLN++ A  + + 
Sbjct: 218 ALMAKASVFARIGQPGGEE--SLNVAAAAAICLH 249


>gi|113954546|ref|YP_729963.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CC9311]
 gi|113881897|gb|ABI46855.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CC9311]
          Length = 290

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 28/190 (14%)

Query: 8   LQNSAKGPVIILV--DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA- 64
           L +  + P  +L     Q   N+G + R     ++ Q           + K   SSA A 
Sbjct: 113 LPSVVEAPDFVLALDRIQDPGNLGTLLRTARAADIQQ-VWCASGADPLAPKVVRSSAGAI 171

Query: 65  ----------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE- 113
                     D +   V++   L +A      I AT           L P  AA +  + 
Sbjct: 172 LSLPVERFGPDPMEGVVQLAERLNQAREAGLQIVAT-----------LVPDAAANLSVQP 220

Query: 114 --RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +       ++ G E  GL     A  +A ++ P +    SLN++ A + ++ E    
Sbjct: 221 YWELDWTLPTVLLLGNEGAGLDPLLQACCSAGVTLPHSSAVESLNVAAAAVPLLLERRRA 280

Query: 172 SIVSSEKNVK 181
            + SS +   
Sbjct: 281 RMTSSMQTTG 290


>gi|148998503|ref|ZP_01825944.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|183603868|ref|ZP_02722493.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
 gi|307068582|ref|YP_003877548.1| rRNA methylase [Streptococcus pneumoniae AP200]
 gi|147755696|gb|EDK62742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577619|gb|EDT98147.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
 gi|306410119|gb|ADM85546.1| rRNA methylase [Streptococcus pneumoniae AP200]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTAEAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 245


>gi|123969030|ref|YP_001009888.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123199140|gb|ABM70781.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 236

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 23/163 (14%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   Q   N+G + R      +  + L         +K   +S+ A   +  +R F 
Sbjct: 74  VLVLDRIQDPGNMGNLFRTALAAGVNAIFLAG-GAHPLGQKVLRASSGAVFHLPFLR-FD 131

Query: 76  NLKEAIADLHF------------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            ++E I +               I++T++ N +  K      E        +   +   +
Sbjct: 132 GIEEEILNSLLNSLSELSNVGFKIFSTSSHNESTKKPSKPYWE--------VDWSRRTAL 183

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS-QAVLLMV 165
           I G E  G+  +     N  I+ P + +  SLN++  AV L++
Sbjct: 184 ILGNEGKGIHKKIQEAFNETITIPHSEIVESLNVACVAVPLLL 226


>gi|261883694|ref|ZP_06007733.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 160

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 12/130 (9%)

Query: 4   YAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
              +L    + P++ +L       N+G + R+   F    L   +      +     +++
Sbjct: 35  RTRKLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAAS 94

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A  +I  + V  NL EAI +LH +   T    +             +  E   SG  + 
Sbjct: 95  GALELIAHIEV-RNLAEAIEELHTLGFQTIGLDS----------QGPLEMEATLSGNRIA 143

Query: 123 IIFGRERWGL 132
           ++ G E  GL
Sbjct: 144 LVLGAEGXGL 153


>gi|148985553|ref|ZP_01818742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922273|gb|EDK73394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP3-BS71]
          Length = 236

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 101 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LL 157

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 158 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 195

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 196 GQGISPLMAESADQLVHISMKGQAESLNVAVATGILIFHL 235


>gi|124808939|ref|XP_001348447.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium
            falciparum 3D7]
 gi|23497341|gb|AAN36886.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium
            falciparum 3D7]
          Length = 2779

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 123  IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +I G E+ GL +  +   +  I  P   +  SLN+  +  + ++E  +  +
Sbjct: 2729 LILGDEKEGLPSSILMFLHHCIEIPGQGIIRSLNVHVSAAITIYEYFKQQL 2779


>gi|75761063|ref|ZP_00741062.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491447|gb|EAO54664.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 69

 Score = 41.2 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +    +  +I G E  G+  E +  ++  +  P+     SLN++ A  ++ +
Sbjct: 8   EVTPAGSFALIVGNEGNGVRQEILTKTDQNLYIPIYGGAESLNVAVAAGILTY 60


>gi|332367397|gb|EGJ45130.1| SpoU rRNA methylase [Streptococcus sanguinis SK1059]
          Length = 269

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 28/55 (50%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            + S ++  ++ G E  G++ E  A ++ ++   +     SLN++ A  ++++  
Sbjct: 214 EVDSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 268


>gi|330467003|ref|YP_004404746.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328809974|gb|AEB44146.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 265

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 111 LNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           L +          +FG E  GL +E IA ++A +  P++    SLN++ A  + ++    
Sbjct: 203 LADAGRLAVPTAWLFGSEAHGLPDELIAAADARVRVPLHGRAESLNLAAAAAVCLYASAR 262

Query: 171 NS 172
             
Sbjct: 263 AQ 264


>gi|302832103|ref|XP_002947616.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f.
           nagariensis]
 gi|300266964|gb|EFJ51149.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f.
           nagariensis]
          Length = 279

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 93  RNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPL 151
           R           +  AI+L+    S    + ++ GRE  G++ E +A ++  +  P+   
Sbjct: 105 RMAGKSGPRTWRRRDAILLHGTALSLPARLAVVMGREADGVSREMLAAAHRRVCLPMYGF 164

Query: 152 FPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGE 191
             S N+S A  +++         +   ++ E    A + E
Sbjct: 165 NDSFNLSVATSMVLHHLFLCCPEARG-DLTEGRKRALRTE 203


>gi|212635898|ref|YP_002312423.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella piezotolerans WP3]
 gi|212557382|gb|ACJ29836.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella piezotolerans WP3]
          Length = 175

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 61/167 (36%), Gaps = 45/167 (26%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-- 73
            I L++P+   N+G + RA       +         +   +   +++N      + +   
Sbjct: 8   AIGLLNPKSPTNVGGIMRAA---GCYR----ADAVFYTGRRYPLAASNG-----NAQYNT 55

Query: 74  -------------FSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                          +L +A+ AD+  +              +   E A  L E     +
Sbjct: 56  DTKAASEQIPLTGVESLVDAVAADVTIVC-------------VDLVEGATPLPEFEHPDK 102

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  IFG E   ++ + I  ++A++  P       +N++ +V ++++
Sbjct: 103 AI-YIFGPEDGTISQQVINRADAVVYVPT---VGCMNLAASVNVLLY 145


>gi|160888268|ref|ZP_02069271.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492]
 gi|156862214|gb|EDO55645.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492]
          Length = 253

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 33/163 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRD-GWPSEKARSSSANADCVIDSVRVFSN-LKEA 80
           Q   N+G + R    F +      +P      + K   ++      I  VR+    L E 
Sbjct: 113 QDPGNLGTIVRLADWFGIEH-IFCSPNTVDIYNPKTVQATMGG---IARVRLHYTPLPEF 168

Query: 81  IADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           I  L    +Y T     N +   L+               +N  I+ G E  G+  E  A
Sbjct: 169 IRSLKDIPVYGTFLDGENMYGQPLS---------------KNGLIVMGNEGNGIGKEVEA 213

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENSIV 174
           L N  +  P    +P       SLN++ A  ++  E    + +
Sbjct: 214 LINRKLYIP---NYPASRETSESLNVAIATAVVCAEFRRQAAL 253


>gi|50365074|ref|YP_053499.1| rRNA methylase [Mesoplasma florum L1]
 gi|50363630|gb|AAT75615.1| rRNA methylase [Mesoplasma florum L1]
          Length = 251

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 60/158 (37%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVR 72
           ++IL   Q   N+G + R+  +F    +   N    + + K   S+     +  +I+   
Sbjct: 106 ILILDQIQDPGNMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFSINLINDDL 165

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +   + E   + + I  T           +   E   +        Q   +I G E  G+
Sbjct: 166 I-KTIDELKQNNYQIIGT-----------VLNDETKFMKQIEFSKNQKYALIIGNEAKGI 213

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           ++E   L +  ++  ++    SLN + A  ++++   +
Sbjct: 214 SDELKPLIDINLNIEMSNEVESLNAAIAGSIIMYNIKK 251


>gi|326800581|ref|YP_004318400.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
 gi|326551345|gb|ADZ79730.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
          Length = 252

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 20/155 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSN 76
           +L   Q   N+G + R    F +  +          + K   ++  +   +  V + +++
Sbjct: 109 VLDTIQDPGNLGTIIRTADWFGIKHIICSEETVECFNPKVVQATMGS---LAHVSIHYTD 165

Query: 77  LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           L   + ++    +AT          VL               G    II G E  G+  +
Sbjct: 166 LHAFLKNVTLPSFAT----------VLD-----GQSIYETDFGSEGFIILGNEGNGIAPD 210

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I+     I+ P      SLN++ +  +   E   
Sbjct: 211 LISNKTQRITIPSFGNAESLNVAVSAAICCSEISR 245


>gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 245

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 15/160 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
                 +G  +IL D Q   N+G + R         + L        + K   S   +  
Sbjct: 94  AFPTDYQGKYLILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHF 153

Query: 67  VID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +      ++   +E       + ATT                  V  + +   ++  ++
Sbjct: 154 HLPIWRTDIYKICREMQEHNTPVLATTLSK-------------VSVDYKTVPHQESFALV 200

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            G E  G++ E   L++ ++   +     SLN++ A  ++
Sbjct: 201 MGNEGQGISAEMTTLADQLVHITMPGQAESLNVAVAAGIL 240


>gi|229543606|ref|ZP_04432666.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
 gi|229328026|gb|EEN93701.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
          Length = 251

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 103 APKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVL 162
              E  +   E +  G    I+ G E  G+  + +A +   +S P+     SLN++ A  
Sbjct: 183 TALENGVTFRE-VNPGDAFAILVGNEGSGVHPDLLAQTEQNLSIPIFGKSESLNVAVAAG 241

Query: 163 LMVWECMENS 172
           +++++    S
Sbjct: 242 ILMYDFAMRS 251


>gi|118618277|ref|YP_906609.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
 gi|118570387|gb|ABL05138.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
          Length = 154

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 19/132 (14%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
            P++  N G   R        +L LV P     SE     +      + SV V  +L +A
Sbjct: 8   SPRIAPNTGNAIRTAAATGC-ELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHGSLTQA 66

Query: 81  IADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
              L    ++A TA     F  V                     ++FG E  GL    +A
Sbjct: 67  WDALLPARVFAFTAGASVTFSDVDFR--------------PGDVLMFGPEPTGLHAATLA 112

Query: 139 LSNAI--ISFPV 148
            ++    +  P+
Sbjct: 113 DAHITQQVRIPM 124


>gi|225857547|ref|YP_002739058.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
 gi|225724882|gb|ACO20734.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|237842689|ref|XP_002370642.1| RNA methyltransferase, TrmH family domain-containing protein
            [Toxoplasma gondii ME49]
 gi|211968306|gb|EEB03502.1| RNA methyltransferase, TrmH family domain-containing protein
            [Toxoplasma gondii ME49]
          Length = 2899

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 13/152 (8%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIADLH 85
            N+  +AR    F+  +L + N  D     +  +   +A   +   +V   ++   + DL 
Sbjct: 2759 NLAGLARTCEVFDAKKLVIHN-LDILSDPQFNTIGVSAHRWLPIEQVSADDVARYLLDL- 2816

Query: 86   FIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +    +V+  ++     + E     +   ++ G E+ GL    +AL +A I
Sbjct: 2817 ---------KTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLPAALLALMDACI 2867

Query: 145  SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              P   L  SLN+     ++VWE  +   + +
Sbjct: 2868 EIPQLGLIRSLNVHVTAAMVVWEYTKQHSLGA 2899


>gi|58583011|ref|YP_202027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427605|gb|AAW76642.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 353

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 29/182 (15%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKA 57
           P    L    +GPV+ L    V      N G + R+  +F +  L L      G     A
Sbjct: 191 PLQEWLAALPQGPVLALWLDGVG--NPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAA 248

Query: 58  RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           R +   A+ V      D+    + L++A     F  A T  +             A  L 
Sbjct: 249 RVAEGGAEAVPLVQLPDTATAMAQLRQA----GFAIAATLVDGGQ-------DVFAAALP 297

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +R+        + G E  G+        +  +S   +    SLN++ A  +         
Sbjct: 298 QRL------VYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHARV 351

Query: 173 IV 174
           + 
Sbjct: 352 LA 353


>gi|15903830|ref|NP_359380.1| rRNA/tRNA methylase [Streptococcus pneumoniae R6]
 gi|15459472|gb|AAL00591.1| Possible rRNA/tRNA methylase [Streptococcus pneumoniae R6]
          Length = 252

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 117 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPA--LL 173

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 174 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 211

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 212 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 251


>gi|116179962|ref|XP_001219830.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
 gi|88184906|gb|EAQ92374.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
          Length = 647

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
           P L  + K  V+IL       N+G + R       T + +        +  A  +S+ A 
Sbjct: 449 PTLSPTHKPLVLILDQILDPGNLGAILRTASFLGATAVGITRHGSAPLTPVALKASSGAA 508

Query: 66  CVIDSVRVFSN---LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             +    V S    L  + A+   +YA  A   ++ +      +   V        +   
Sbjct: 509 ESLSLFSVSSLPEFLNASRANGWAVYAAVAEGPSSERRQRRHVDVRDVTETDPLKREPCV 568

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFP-----SLNISQAVLLMV 165
           ++ G E  GL+   +  ++  ++ P N   P     SLN+S AV L+ 
Sbjct: 569 LLVGNEGEGLSRLVVKKADYEVNVP-NLAMPGSGVDSLNVSVAVGLLC 615


>gi|293364739|ref|ZP_06611456.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
 gi|291316189|gb|EFE56625.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +G  + L D Q   N+G + R       T   +V+ +           S      
Sbjct: 96  LPDFRQGKYLFLEDVQDPGNVGTMIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHF 154

Query: 68  ---IDSVRVFSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              I  + + S ++EA      I ATT +R+  +++               + S +N  +
Sbjct: 155 HLPIYRMPLVSFVEEAKKSNLPILATTLSRDSKDYR--------------ELSSLENFVL 200

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + G E  G+++     ++ ++   +     SLN++ A  ++++
Sbjct: 201 VMGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|284044449|ref|YP_003394789.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
 gi|283948670|gb|ADB51414.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
          Length = 261

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 98  FKSVLAPKEAAIVLNERIFSGQNVGII-FGRERWGLTNEEIALSNAIISFPVNPLFPSLN 156
            + ++A   A   L           I+ FG ER GL++  +  +   +   +     SLN
Sbjct: 190 GRPLVALDPAGEPLRAAAGQLPPGAILAFGTERHGLSDALLTCAELRLRIEMRAGVSSLN 249

Query: 157 ISQAVLLMVW 166
           ++ AV  +++
Sbjct: 250 LATAVSAVLF 259


>gi|221485609|gb|EEE23890.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2905

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 13/152 (8%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIADLH 85
            N+  +AR    F+  +L + N  D     +  +   +A   +   +V   ++   + DL 
Sbjct: 2765 NLAGLARTCEVFDAKKLVIHN-LDILSDPQFNTIGVSAHRWLPIEQVSADDVARYLLDL- 2822

Query: 86   FIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +    +V+  ++     + E     +   ++ G E+ GL    +AL +A I
Sbjct: 2823 ---------KTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLPAALLALMDACI 2873

Query: 145  SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              P   L  SLN+     ++VWE  +   + +
Sbjct: 2874 EIPQLGLIRSLNVHVTAAMVVWEYTKQHSLGA 2905


>gi|27367704|ref|NP_763231.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
 gi|27359276|gb|AAO08221.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
          Length = 244

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +   +      + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASSDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V  +L   +   +               +         +++  FS Q + ++ G E 
Sbjct: 157 VSLV--DLPSYLEQANL-------------PIYGAFLEGESVHKTTFSAQGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +   L    I+ P      SLN++ A  +++      
Sbjct: 201 HGVREQASKLVTDKITIPTFGGAESLNVAMATGIILDNIRRQ 242


>gi|221503013|gb|EEE28723.1| RNA methylase, putative [Toxoplasma gondii VEG]
          Length = 2898

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 13/152 (8%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIADLH 85
            N+  +AR    F+  +L + N  D     +  +   +A   +   +V   ++   + DL 
Sbjct: 2758 NLAGLARTCEVFDAKKLVIHN-LDILSDPQFNTIGVSAHRWLPIEQVSADDVARYLLDL- 2815

Query: 86   FIYATTARNRNNFKSVLAPKEAAI-VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
                     +    +V+  ++     + E     +   ++ G E+ GL    +AL +A I
Sbjct: 2816 ---------KTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLPAALLALMDACI 2866

Query: 145  SFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              P   L  SLN+     ++VWE  +   + +
Sbjct: 2867 EIPQLGLIRSLNVHVTAAMVVWEYTKQHSLGA 2898


>gi|199597200|ref|ZP_03210632.1| rRNA methylase [Lactobacillus rhamnosus HN001]
 gi|199592004|gb|EDZ00079.1| rRNA methylase [Lactobacillus rhamnosus HN001]
          Length = 253

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 11/168 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   A QL +   G  ++L   Q   N+G + R      +  +   N        K   +
Sbjct: 94  MPRQAGQLPDPLSGQFLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRA 153

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +      VR+ S      A L  +    A  R       +           I     
Sbjct: 154 MQGSQF---HVRIVS------AKLMPVI--KALQRAGIPVYGSELNDKAKSYRSIQPSAQ 202

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            G++ G E  G+    +  ++  +  P+     SLN++ A  +M++  
Sbjct: 203 FGLVVGNEGNGMDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250


>gi|327308270|ref|XP_003238826.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
 gi|326459082|gb|EGD84535.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
          Length = 505

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 59/179 (32%), Gaps = 17/179 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82
             N+G + R+ + F    +   +      S     ++A A   I   SVR  S    A  
Sbjct: 321 PGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQ 380

Query: 83  DLHF-IYATTARNRNNFKSVLA--PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
              +  +A  A +           P   ++       +     ++ G E  GL  +    
Sbjct: 381 ANGWKFFAADAPDATLVNDYTRKIPVINSLEALASELTKAPCVLMLGGEGSGLQQKIKNR 440

Query: 140 SNAIISFPVN---------PLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQNTPA 187
           +++ ++ P               SLN+S A  L+  E         SS +     +TPA
Sbjct: 441 ADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC-EAFLSRRPPSSSAETQDSLDTPA 498


>gi|324991298|gb|EGC23231.1| SpoU rRNA methylase [Streptococcus sanguinis SK353]
 gi|325687125|gb|EGD29148.1| SpoU rRNA methylase [Streptococcus sanguinis SK72]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 29/55 (52%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++ S ++  +I G E  G++ E  A ++ ++   +     SLN++ A  ++++  
Sbjct: 191 KVDSKESFALIMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|224370180|ref|YP_002604344.1| hypothetical protein HRM2_30970 [Desulfobacterium autotrophicum
           HRM2]
 gi|223692897|gb|ACN16180.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 185

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 27/154 (17%)

Query: 31  VARAMWNFNLTQLRLVNPRDG---WPSEKA-RSSSANADCV-------IDSVRVFSNLKE 79
           +ARA   F +    +V P         E     +      +       ++ +RV  + + 
Sbjct: 33  IARAAITFGVRGFFVVTPLTDQQVLAHEVIDHWTRGKGGELNPFRKQALERIRVVPSFEA 92

Query: 80  AIADL-------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           A+A++           AT+A        +         +   +   +   I FG   WGL
Sbjct: 93  AVAEIMQETGKPVTTVATSAAEGKTTVPL-------AEVVRTMGREKAHLIAFGT-AWGL 144

Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
           +   I   + ++        +  L++  AV +++
Sbjct: 145 SEAFINDCDLLMEPISGVNGYNHLSVRSAVSIIL 178


>gi|184199838|ref|YP_001854045.1| RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183580068|dbj|BAG28539.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 239

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 17/159 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   NIG V R    F   ++ ++  R  W    A  +          VR  +++ E + 
Sbjct: 87  EHDFNIGSVVRTANAFLAREVHIIG-RRRWNRRGAMVT-----DRYQHVRHHASVAEFVE 140

Query: 83  DLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                       R    +VLA        L E     +   ++FG+E  G++ E +A ++
Sbjct: 141 ----------WARGEELAVLAIDNVPGSQLIETFDLPERCVLVFGQEGPGVSGELVAQAD 190

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           A+++        S+N   A  + +   +   +       
Sbjct: 191 AVLAIEQFGSTRSINAGAAAAVTMHAWIRRHVFEQGPAP 229


>gi|309806115|ref|ZP_07700134.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
 gi|308167470|gb|EFO69630.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
          Length = 114

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +G+I G E  G++ +     +  I  P+     SLN + A  +M++
Sbjct: 65  QLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNAAVAAGIMIY 111


>gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
 gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
          Length = 288

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 67/181 (37%), Gaps = 24/181 (13%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSS 61
             P   +S     ++L   Q   N+G + R+ +   + +   V    R+  P     S +
Sbjct: 116 SKPPRDSSHIPLWLVLDGVQDPMNLGAILRSAYFLGVDR---VASSLRNSCPLTPVVSKA 172

Query: 62  ANADCVIDSVRVF--SNLKE----AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERI 115
           ++   V++ +RV+   +L +     +A    +  T      N    +           + 
Sbjct: 173 SSG--VMEVMRVYGYDSLTDMLKVKLAQGWQVIGTVGAEAENAHVPVM-------KCSKF 223

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISF----PVNPLFPSLNISQAVLLMVWECMEN 171
              +   ++ G E  GL+ E       +++      ++P   SLN+S A  +++   + +
Sbjct: 224 QMTKPTLLLMGGEGEGLSRELRLQCEVMLTIIPRRDLHPGVESLNVSVATGILLHSLLSS 283

Query: 172 S 172
            
Sbjct: 284 R 284


>gi|167946061|ref|ZP_02533135.1| RNA methyltransferase TrmH, group 2 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 70

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
          ++L +P++  N G + R   N   + L L+ P      +K    + 
Sbjct: 9  VVLYEPEIPPNTGNIIRLCANTG-SSLHLIQPLGFELDDKRLRRAG 53


>gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
          Length = 245

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + +   + + ++ G E  G++ E  AL++ ++   +     SLN++ A  ++
Sbjct: 189 KSLTHHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGIL 240


>gi|116516909|ref|YP_817193.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae D39]
 gi|172079590|ref|ZP_02709224.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
 gi|116077485|gb|ABJ55205.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae D39]
 gi|172042492|gb|EDT50538.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
 gi|332199399|gb|EGJ13476.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47368]
          Length = 246

 Score = 41.2 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 39/160 (24%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVI 68
           Q   N+G + R       T   +V+ +                         ++ A  ++
Sbjct: 111 QDPGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPA--LL 167

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D  +       AI     + ATT       K  +  +E   +        +N  ++ G E
Sbjct: 168 DETKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNE 205

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 206 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|28377488|ref|NP_784380.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254555718|ref|YP_003062135.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|308179699|ref|YP_003923827.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270320|emb|CAD63221.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254044645|gb|ACT61438.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|308045190|gb|ADN97733.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 255

 Score = 41.2 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 24/156 (15%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---- 73
           IL + +   N+G + R         + +   R    +     +S  A   +   RV    
Sbjct: 108 ILDNIEDPHNLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLV 167

Query: 74  --FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                L+EA     +I+ T                      +   SG  VG+I G E  G
Sbjct: 168 QTVKQLQEA---GLWIFGT--------------DMNGTDYRQWDASGA-VGLIIGNEGKG 209

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
           ++       + +++ P+     SLN S A  L++++
Sbjct: 210 ISPLLKKSVDEMLTIPMIGHVQSLNASVAASLLIYQ 245


>gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|94989802|ref|YP_597902.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
 gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 245

 Score = 41.2 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + +   + + ++ G E  G++ E  AL++ ++   +     SLN++ A  ++
Sbjct: 189 KSLTHHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGIL 240


>gi|120611002|ref|YP_970680.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120589466|gb|ABM32906.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 162

 Score = 41.2 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 24/173 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            I L  P+   N+G V RA        +RLV              +       ++ +   
Sbjct: 8   AIGLHRPKNVLNMGEVMRAA---GCYDVRLVA-------VAGHRFARAPTDTQEAWKHIP 57

Query: 76  NLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++  A+ D   + A          +   P         +    +    I G E   L  
Sbjct: 58  TIEVPALLDAMPVGAVPVAVEFIPSATPLP---------QFVHPERAFYILGPEDGSLPA 108

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVSSEKNVKEQNTP 186
           E +     ++  P       +N++  V +++++   +       ++      P
Sbjct: 109 EIVQQCRHVVFVPTR---FCMNLAATVNVLLYDRLAKQPRRPGVRHSSSSEAP 158


>gi|325696356|gb|EGD38247.1| SpoU rRNA methylase [Streptococcus sanguinis SK160]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 28/55 (50%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            + S ++  ++ G E  G++ E  A ++ ++   +     SLN++ A  ++++  
Sbjct: 191 EVDSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|149185879|ref|ZP_01864194.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148830440|gb|EDL48876.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 268

 Score = 40.8 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 18/148 (12%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV--IDSVRVFSNLKEAI- 81
             N+G + R         L L++      S +A  +S  A     I     +S  +  + 
Sbjct: 132 PGNLGTMLRTGDAIGAGGLILIDDCADPFSVEAVRASMGAVFTQGIAQAE-WSEFESWLR 190

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           A    + A + R+         P   A              ++ G E  GL  +     +
Sbjct: 191 AGEGQLVAASLRDAQ-------PYRGAPYAA-------PCFVMVGNESRGLPEDYEMACD 236

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM 169
             ++ P+     SLN + A  ++ +E +
Sbjct: 237 LRVTMPMKGRADSLNAAVAAAVLGYEVL 264


>gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016]
 gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
 gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 266

 Score = 40.8 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             + I  G E  GL  +   +S+  ++ P+     SLN + A  +M++E +   + S   
Sbjct: 205 GKIIIAIGNEGNGLLQDVKKISDIEVNIPMPGNAESLNAAVAASIMMFEVVRQKLNSHVD 264

Query: 179 NV 180
           N+
Sbjct: 265 NM 266


>gi|148973891|ref|ZP_01811424.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
 gi|145965588|gb|EDK30836.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
          Length = 244

 Score = 40.8 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 26/167 (15%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCV 67
             AKG +I L       N+G + R    + +  +   +      + K  S++        
Sbjct: 97  PEAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVH 156

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---II 124
           I    + + L++A                       P   A +  E +          ++
Sbjct: 157 ISQTDLPAYLEQA---------------------NLPVYGAFLEGESVHKTDFTANGILL 195

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  G+           I+ P      SLN++ A  +++      
Sbjct: 196 MGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|227505968|ref|ZP_03936017.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227197490|gb|EEI77538.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 123

 Score = 40.8 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            V I+ G E  G++       + I+S P+     SLN S A   ++ E       + 
Sbjct: 67  PVVIVIGSEGKGISRLVRENCDVIVSIPMTAWVESLNASVAAGAVLSEFARRRRAAK 123


>gi|169606800|ref|XP_001796820.1| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
 gi|160707082|gb|EAT86280.2| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
          Length = 283

 Score = 40.8 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP-----SLNISQAVLLMVWECMENSI 173
               ++ G E  GL +  + L++  +              SLN+S A  ++ +E ++  I
Sbjct: 212 HPTILMMGAEGTGLRDSLLNLAHYKVGIKHGREVDEIGVDSLNVSVAASILSYEMLQKPI 271

Query: 174 VSSEKNVKE 182
             +    +E
Sbjct: 272 AKAASTPEE 280


>gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes
           MGAS315]
 gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
 gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 245

 Score = 40.8 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + +   + + ++ G E  G++ E  AL++ ++   +     SLN++ A  ++
Sbjct: 189 KSLTHHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGIL 240


>gi|221134597|ref|ZP_03560900.1| putative cold-shock RNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 166

 Score = 40.8 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 34/156 (21%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSE---KARSS-----SANADCVIDS 70
           L++P+   N+  + RA   + ++ +     R G+  E     +       +   D ++  
Sbjct: 10  LINPKSASNVASILRAAGCYGVSAVYYTGQRFGYAKEFNADTQRMRDKIPTVGVDDLLAY 69

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
                                 + +     V+   E AI L E     +N   I G E  
Sbjct: 70  ----------------------KPQGASIVVVELVENAIPLPEFTHP-ENAYYILGPEDG 106

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +  E +  ++A++  P    F S+N+     ++++
Sbjct: 107 SVPIEIVETADAVVYVPT---FNSMNLGATGNVILY 139


>gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
 gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 245

 Score = 40.8 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + +   + + ++ G E  G++ E  AL++ ++   +     SLN++ A  ++
Sbjct: 189 KSLTHHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGIL 240


>gi|258623419|ref|ZP_05718422.1| predicted rRNA methylase [Vibrio mimicus VM573]
 gi|258584234|gb|EEW08980.1| predicted rRNA methylase [Vibrio mimicus VM573]
          Length = 152

 Score = 40.8 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL  +   TA   ++ + V                 +    +FG E   L  + +  ++ 
Sbjct: 37  DLVEMVDLTAGLDHDVEIVCVELVVGATALPHFEHPEKAIYLFGPEDGSLPQDVVDKAHH 96

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++  P +     +N++  V +++++ M  S+ +
Sbjct: 97  VVYVPTHGC---MNLAATVNVVMYDRMAKSLGA 126


>gi|70944707|ref|XP_742256.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521130|emb|CAH74309.1| hypothetical protein PC000031.00.0 [Plasmodium chabaudi chabaudi]
          Length = 867

 Score = 40.8 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +   +I G E+ GL +  + L +  +  P + +  SLN+  +  + ++E 
Sbjct: 818 EKCILILGDEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAAITIYEY 867


>gi|313620923|gb|EFR92097.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           S4-378]
 gi|313625369|gb|EFR95160.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           J1-023]
          Length = 43

 Score = 40.8 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              + ++  P+     SLN S A  L+++E   
Sbjct: 4   EKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 36


>gi|307565244|ref|ZP_07627738.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
 gi|307346057|gb|EFN91400.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
          Length = 252

 Score = 40.8 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 53/173 (30%), Gaps = 56/173 (32%)

Query: 23  QLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANA---------------DC 66
           Q   N+G + R    F +  +   ++  D W S K   ++  +               D 
Sbjct: 112 QDPGNMGTIIRIADWFGIENIYCSIDTVDCW-SPKVVQATMGSIARVNIYYINLPAFIDK 170

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           V +   +++ L   +   +                         L+      QN  I+ G
Sbjct: 171 VPNDCPIYTTL---LTGCNI--------------------YNQKLS------QNGIIVMG 201

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            E  G++ E     N  +  P    +        SLN++ A  ++  E   N 
Sbjct: 202 NEGKGISEELRQKVNKSLYIP---NYSLKESSAESLNVAVATAIICAEFRRNR 251


>gi|209558854|ref|YP_002285326.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
 gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
          Length = 245

 Score = 40.8 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + +   + + ++ G E  G++ E  AL++ ++   +     SLN++ A  ++
Sbjct: 189 KSLTHHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGIL 240


>gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
          Length = 245

 Score = 40.8 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           + +   + + ++ G E  G++ E  AL++ ++   +     SLN++ A  ++
Sbjct: 189 KSLTHHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGIL 240


>gi|331703507|ref|YP_004400194.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802062|emb|CBW54216.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 255

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+  +FN     + +P       +    S     +     V   L   I 
Sbjct: 115 QDPGNLGTLIRSAASFNFKT-VIASPNSVNFHNQKVLRSTQG-NLFQVNLVNEYLVTVIN 172

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            LH     I  T+    ++ K +            +  S     +I G E  G++ E + 
Sbjct: 173 QLHDNNYIIIGTS--LHDDSKPL---------SKVKFDSDDKYALIIGNEGKGISPELLD 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           L +  I+  +     S+N + A  +++++ 
Sbjct: 222 LIDLNINIEMAEDVDSINAAVAGSIIMYQI 251


>gi|319957584|ref|YP_004168847.1| RNA methyltransferase, trmh family, group 3 [Nitratifractor
           salsuginis DSM 16511]
 gi|319419988|gb|ADV47098.1| RNA methyltransferase, TrmH family, group 3 [Nitratifractor
           salsuginis DSM 16511]
          Length = 233

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 59/151 (39%), Gaps = 13/151 (8%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L       NIG + R+ +   +    +V    G  +  A + +++   +     +  
Sbjct: 89  VLVLDTLTDAGNIGAIVRSAYALGVDG--IVATGIGQLNFSAVTRTSSGALLEMPFALHR 146

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N+ + + +L          +     +         + E++F  +   ++ G E  G++ +
Sbjct: 147 NILDVLHEL----------KQAGHRLYGASMEGEPIEEKLFDRKRT-LVLGSEERGISKK 195

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                +  ++  +   F SLN+S A  +M+ 
Sbjct: 196 ARERLDETVAIRMKRPFDSLNVSAAAAIMIH 226


>gi|256384063|gb|ACU78633.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384895|gb|ACU79464.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455884|gb|ADH22119.1| rRNA methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 255

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+  +FN     + +P       +    S     +     V   L   I 
Sbjct: 115 QDPGNLGTLIRSAASFNFKT-VIASPNSVNFHNQKVLRSTQG-NLFQVNLVNEYLVTVIN 172

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            LH     I  T+    ++ K +            +  S     +I G E  G++ E + 
Sbjct: 173 QLHDNNYIIIGTS--LHDDSKPL---------SKVKFDSDDKYALIIGNEGKGISPELLD 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           L +  I+  +     S+N + A  +++++ 
Sbjct: 222 LIDLNINIEMAEDVDSINAAVAGSIIMYQI 251


>gi|42561043|ref|NP_975494.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492540|emb|CAE77136.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320852|gb|ADK69495.1| RNA methyltransferase, TrmH family [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 255

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 17/150 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+  +FN     + +P       +    S     +     V   L   I 
Sbjct: 115 QDPGNLGTLIRSAASFNFKT-VIASPNSVNFHNQKVLRSTQG-NLFQVNLVNEYLVTVIN 172

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            LH     I  T+    ++ K +            +  S     +I G E  G++ E + 
Sbjct: 173 QLHDNNYIIIGTS--LHDDSKPL---------SKVKFDSDDKYALIIGNEGKGISPELLD 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           L +  I+  +     S+N + A  +++++ 
Sbjct: 222 LIDLNINIEMAEDVDSINAAVAGSIIMYQI 251


>gi|297521521|ref|ZP_06939907.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli OP50]
          Length = 78

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
          I+L +P++  N G + R   N    +L ++ P      +K    + 
Sbjct: 4  IVLYEPEIPPNTGNIIRLCANTGF-RLHIIEPMGFAWDDKRLRRAG 48


>gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT
           894]
          Length = 296

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   FN     ++  +   P+E    +  ++ A  +I  ++V +
Sbjct: 151 VLDQVTDPHNVGAIMRSAVAFNAG--AVITTQRHSPTESGVLAKSASGALELIPYIQV-T 207

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +  +T    +   + L          E  FSG+ + ++ G E  GL  +
Sbjct: 208 NLADALGELHKLGFSTIGLDSEGPAPL----------EGTFSGEKLALVLGSEGKGLRQK 257

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                NA+    +     SLN+S 
Sbjct: 258 TRETVNALARLDMPGAIKSLNVSN 281


>gi|290954068|ref|ZP_06558689.1| hypothetical protein FtulhU_07312 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312534|ref|ZP_06803296.1| hypothetical protein FtulhU_07304 [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 67

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +   P+     SLN+S A  + ++E +   
Sbjct: 31  CDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 63


>gi|89256903|ref|YP_514265.1| rRNA methylase [Francisella tularensis subsp. holarctica LVS]
 gi|169656715|ref|YP_001429146.2| hypothetical protein FTA_1715 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|89144734|emb|CAJ80065.1| rRNA methylase [Francisella tularensis subsp. holarctica LVS]
 gi|164551783|gb|ABU62190.2| hypothetical protein FTA_1715 [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 63

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +   P+     SLN+S A  + ++E +   
Sbjct: 27  CDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 59


>gi|156973799|ref|YP_001444706.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
 gi|156525393|gb|ABU70479.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
          Length = 244

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 22/165 (13%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             AKG +I L       N+G + R    + +  +          + K  S++  +   + 
Sbjct: 97  PQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFG 126
              V  +L   + D +                  P   A +  E +   +      ++ G
Sbjct: 157 VSLV--DLPSYLEDANL-----------------PVYGAFLEGESVHKTEFSADGILLMG 197

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            E  G+           I+ P      SLN++ A  +++      
Sbjct: 198 SESHGVREAASKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|145354481|ref|XP_001421512.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581749|gb|ABO99805.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 318

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 15/172 (8%)

Query: 6   PQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P+     + PV + L +    +N+G   R+     +  +          +     +SA A
Sbjct: 153 PKWDGRGEPPVWLALDEIVDPQNLGAALRSAHFLGVDGVVCCAKNSAPFNATVSKASAGA 212

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +++  V          +   +   AR+        A    A  +++       + ++
Sbjct: 213 ---MEAQVVHQT------GVMHRFLAKARDEGWDVVGAAADARAEDVSDFSVRAPTI-LV 262

Query: 125 FGRERWGLTNEEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENS 172
            G E  GL        N +I  P          SLN+S A  +++   +   
Sbjct: 263 MGNEGSGLRTNVRRACNRLIEIPRSASSAAGVDSLNVSVAAGILIHRLVAAR 314


>gi|78048990|ref|YP_365165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037420|emb|CAJ25165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 390

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 29/172 (16%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKA 57
           P    L    +GPV+ L    V      N G + R+  +F +  L L      G     A
Sbjct: 225 PLQEWLAALPQGPVLALWLDGVG--NPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAA 282

Query: 58  RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           R +   A+ V      D+    + L++A     F  A T  +             A  L 
Sbjct: 283 RVAEGGAEAVPLVQLPDTATAMAQLRQA----GFAIAATLVDGGQ-------DVFAAALP 331

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +R+        + G E  G+        +  +S   +    SLN++ A  + 
Sbjct: 332 QRL------VYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 377


>gi|303237755|ref|ZP_07324314.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
 gi|302482041|gb|EFL45077.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
          Length = 231

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 28/179 (15%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   ++        + L   Q   N+G + R    F +  +          + K   ++ 
Sbjct: 72  PEPDKVLLPTNELALALDGVQDPGNLGTIIRIADWFGIKHIFCSMETADCWNPKVVQATM 131

Query: 63  NADCVIDSVRV-FSNLKE---AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
            +   I  V++ + +LK    A+ D + +Y T     + +K  L                
Sbjct: 132 GS---IARVKLHYGDLKAVLNALPDDYPVYGTLLDGDDIYKQSLT--------------- 173

Query: 119 QNVGIIFGRERWGLTNEEIALS-NAIISFP--VNPLFP--SLNISQAVLLMVWECMENS 172
            +  II G E  G+T EEI    N  +  P   +      SLN++ A  ++  E     
Sbjct: 174 AHGMIIMGNEGKGMT-EEIRKCVNRKLFIPHFASGESHAESLNVAIATAIVCSEFRRRR 231


>gi|300024766|ref|YP_003757377.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526587|gb|ADJ25056.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 168

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               + G E   L+   +   + +I  P    F   N++ A  +++++ +++    +++ 
Sbjct: 106 RAAYVLGPELGSLSEPLVERCDYVIKIPT--RFCI-NVAMAGAIVMYDRVKSLARFADRP 162

Query: 180 VKEQNT 185
           + E   
Sbjct: 163 IGEGGP 168


>gi|241895125|ref|ZP_04782421.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|241871621|gb|EER75372.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 201

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
                +FG E+ GL ++ I  ++A++  P      S+N+  A  ++ 
Sbjct: 143 AKSAFLFGEEKLGLADDLINAADAMVYIPQYGSVRSINVGVAHGVIA 189


>gi|224047842|ref|XP_002191709.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Taeniopygia guttata]
          Length = 1325

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 23/162 (14%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKE 79
              N+G + R    F  + L  V        ++ +  S +A+  +  V V        L++
Sbjct: 1180 PTNLGGLCRTSEIFGASALV-VGSLHYIQDKQFQHLSVSAEQWLPLVEVKPSQLVDYLQQ 1238

Query: 80   AIADLHFIYAT--TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
               + + I     TA++ +       P              +   ++ G E  G+    I
Sbjct: 1239 KKTEGYTIIGVEQTAKSFDLT-EYCFP--------------EKSLLLLGNEHEGIPANLI 1283

Query: 138  ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
               +  +  P   +  SLN+  +  L++WE     ++  ++ 
Sbjct: 1284 HHLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQVIKRKQQ 1325


>gi|195450248|ref|XP_002072430.1| GK22831 [Drosophila willistoni]
 gi|194168515|gb|EDW83416.1| GK22831 [Drosophila willistoni]
          Length = 1132

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKEAI--- 81
            N+G +AR    F +  L ++  +         + S  A+  + ++       L E +   
Sbjct: 992  NLGGLARTCEVFGVKTL-IIATKSDVDKSDFANISMTAEKTL-NIEEVKTVALGEFLIGK 1049

Query: 82   --ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                   + A    +  +F     PK                 ++ G E+ G+  + I  
Sbjct: 1050 QSEGYKIVGAEQTAHSTSFSDFRFPK--------------KCVLLLGHEKHGIPVDLIGF 1095

Query: 140  SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             +  +  P   +  SLN+     L +WE  +  +V  
Sbjct: 1096 LDYAVEIPQFGMVRSLNVHVTGSLFIWEFCKQHMVKK 1132


>gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 245

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 15/160 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
                 +G  +IL D Q   N+G + R         + L        + K   S   +  
Sbjct: 94  AFPTDYQGKYLILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHF 153

Query: 67  VID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +      ++   +E       + ATT                  V  + +   ++  ++
Sbjct: 154 HLPIWRTDIYKICREMQEHNTPVLATTLSK-------------VSVDYKTVPHQESFALV 200

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            G E  G++ E   L++ ++   +     SLN++ A  ++
Sbjct: 201 MGNEGQGISAEMTILADQLVHITMPGQAESLNVAVAAGIL 240


>gi|271966379|ref|YP_003340575.1| 3-hydroxyacyl-CoA dehydrogenase family protein [Streptosporangium
           roseum DSM 43021]
 gi|270509554|gb|ACZ87832.1| 3-hydroxyacyl-CoA dehydrogenase family protein [Streptosporangium
           roseum DSM 43021]
          Length = 317

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 23/116 (19%)

Query: 44  RLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA 103
           RLV+    WP+ +A   +  A    D + V   L+EA+AD  F+               A
Sbjct: 52  RLVD--AAWPALEALGLADGAAR--DRLTVVGTLEEAVADADFV------------QESA 95

Query: 104 PKEAAIV--LNERIFSGQNVGIIFGRERWG--LTNEEIALSN---AIISFPVNPLF 152
           P++ A+   L  RI +   VGI+ G    G  +T+ + A ++    ++  P NP +
Sbjct: 96  PEDLALKSDLLARIDAAAPVGIVIGSSTSGYRMTDMQAAAAHPERLVVGHPFNPPY 151


>gi|224372518|ref|YP_002606890.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
 gi|223588486|gb|ACM92222.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
          Length = 221

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 20/151 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC--VIDSVRV 73
           ++IL       NIG + R  +   +  L +   ++    +  R+S+  A    ++    +
Sbjct: 80  IVILDGVTDMGNIGAITRTAYALGVDLLIITGIKELKWPQVIRTSAGAALDMKILTYHNI 139

Query: 74  FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
              L   +    +I A                  A +  E       + +I G E  GL 
Sbjct: 140 LD-LINILKTKGYIIA-----------------GADMGGECKIEADKLALILGNEGEGLK 181

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            +     + I+S  +   F SLN+S A  ++
Sbjct: 182 KKVKEKLDKILSIEMKNGFDSLNVSVAAGIL 212


>gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
           20745]
 gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
           20745]
          Length = 293

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 17/160 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA--IA 82
             N+G + RA        + +        + K   +   A   +           A  IA
Sbjct: 139 PGNLGTLLRAALGAGAHGVYVTAGTTDPFAPKVVRAGMGAHFRLPIA-YLDWRAPAPHIA 197

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            +    A T                A  + + I       +I G E  GL+      +  
Sbjct: 198 GIATRIAATG--------------DAETVYDAIDWTAPACVIIGSEAEGLSPAAREFATG 243

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
               P+     SLN + A  ++++E          +   E
Sbjct: 244 TARIPLAGGLESLNAAMAGTVILFEAARQRRARELRGEGE 283


>gi|258619991|ref|ZP_05715031.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587724|gb|EEW12433.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 260

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +          + K  S++  +   + 
Sbjct: 113 PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQ 172

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 173 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 216

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 217 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 258


>gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 269

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 25/174 (14%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           +   S K  ++IL   Q   N+G + R+   F    +          ++K   SS  +  
Sbjct: 107 ESLTSEKKDILILYQVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRSSMGSLF 166

Query: 67  ---VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              V+ +  +   L + +    +       +++  K ++              S   V +
Sbjct: 167 HIPVVMNSEI-DQLFQVLQREQYFILF--GDKSGSKPIMTID----------LSNTAVAL 213

Query: 124 IFGRERWGLTNEEI---ALSNAI----ISFPVNPLFPSLNISQAVLLMVWECME 170
             G E  GL  +++      N +    +  P+     SLN   A  +M++E  +
Sbjct: 214 FVGNESRGL--QDLNFDQKFNQVRHQKVEIPMFGKAESLNAGIAGSIMMYELSK 265


>gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 254

 Score = 40.8 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 58/152 (38%), Gaps = 20/152 (13%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  + +        + K   ++  +  +     +  ++ + IA
Sbjct: 118 QDPGNVGTIIRTADAAGIDAVVVGEGSVDIYNAKVIRATQGS--LFHFPVIKGDIGQWIA 175

Query: 83  DLHF----IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
                   IY T+ +N  +++SV                  +  +I G E  G+ ++ + 
Sbjct: 176 HFQNRHIPIYGTSLQNGVDYRSV--------------SPSSSFALIVGNEGSGVNDKWLQ 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            + A +  P+     SLN++ A  ++++   +
Sbjct: 222 QTTANLYVPIYGQAESLNVAVATGILLYHLQK 253


>gi|300856606|ref|YP_003781590.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 260

 Score = 40.8 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             V I  G E  GL+     +S+  +  P+     SLN+S A  +M++E +  +++
Sbjct: 205 GKVIIAVGNEGNGLSKTIQDISDIKVKIPMPGGAESLNVSAAASIMMFEAVRQNLI 260


>gi|189199908|ref|XP_001936291.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983390|gb|EDU48878.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 388

 Score = 40.8 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   ++ G E+ G++ E +A+ +  +      +  SLN+  A  + ++E     
Sbjct: 331 KKCCLVLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQTAGGIALYEWWREW 384


>gi|78356143|ref|YP_387592.1| tRNA (Guanine37-N1) methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|119382736|sp|Q313J9|TRMD_DESDG RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName:
           Full=M1G-methyltransferase; AltName: Full=tRNA [GM37]
           methyltransferase
 gi|78218548|gb|ABB37897.1| tRNA (Guanine37-N(1)-) methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 425

 Score = 40.8 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 18/99 (18%)

Query: 74  FSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            S ++EAI D+         + AT+AR            +       R+   + V ++FG
Sbjct: 328 VSTVEEAIGDIEQRTGQRPTVIATSARGAG---------DTGFESVRRMLREKPVLLLFG 378

Query: 127 RERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLM 164
               GL  + +   + I+        +  L++  A  ++
Sbjct: 379 T-AHGLAPDVLERCDGILRPIRSLDGYNHLSVRTAAAII 416


>gi|37913005|gb|AAR05334.1| predicted tRNA/rRNA methyltransferase [uncultured marine alpha
           proteobacterium HOT2C01]
          Length = 257

 Score = 40.8 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 12/158 (7%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N  +  + +L      +N+G + R+   FN+  + L N      +     ++++A   + 
Sbjct: 103 NEERSIIFLLDQLDDPQNVGAIFRSALAFNIDGIILTNTNSVTENSFLAKTASSALDKVP 162

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +++     + I+    I       +++   +      A          + +  I G E 
Sbjct: 163 FIKI-----QNISSCIKIL------KDSGYWIYGLDMKAERSITETTFPKKIVFILGSES 211

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQ-AVLLMVW 166
            G+     +L +  +   ++    SLN+S  A ++M +
Sbjct: 212 KGMRKITDSLCDEGLKIKMSDNLESLNVSNTAAIIMFY 249


>gi|313673958|ref|YP_004052069.1| tRNA (guanine37-n(1)-) methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940714|gb|ADR19906.1| tRNA (Guanine37-N(1)-) methyltransferase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 433

 Score = 40.8 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 29/154 (18%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NA------DCVIDSVRVFSNLKE 79
           ++R+   F +    +VNP        +R          A          +   +  +L  
Sbjct: 278 ISRSCRTFGVKNYFVVNPMPAQREIASRVVRHWIKGYGATYNENRKEAFEYTIITDSLAS 337

Query: 80  AIA-------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            I            I ATTAR +    S+    E    + +R      + ++FG   WG 
Sbjct: 338 VIKSIEEKESGSPIIIATTARYQQKAISI----EKLKEIADR-----PILLLFGT-GWGF 387

Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
            ++ +  ++ ++        F  L++  AV + +
Sbjct: 388 VDDILEFADYVLKPIHGVGDFNHLSVRSAVAIYL 421


>gi|262165100|ref|ZP_06032837.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
 gi|262024816|gb|EEY43484.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
          Length = 244

 Score = 40.4 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHKTAFKAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|296138340|ref|YP_003645583.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
           paurometabola DSM 20162]
 gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
           paurometabola DSM 20162]
          Length = 324

 Score = 40.4 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 12/164 (7%)

Query: 10  NSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  + P+I+ L +     N+G V R+   F    + + + R    +     +SA A   +
Sbjct: 168 DRGEAPMIVALDNITDPRNLGAVIRSAAAFGGHGVVIPSRRSAAITAVTWRTSAGAAARL 227

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +   NL   +AD    YA           ++       V  +   +   V ++ G E
Sbjct: 228 PVAQ-APNLNRTLAD----YAAAG------LQIVGLDAGGDVTLDDYRADTGVVVVVGSE 276

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GL+       ++I+S P+     SLN S A  +++ +     
Sbjct: 277 GKGLSRLVRENCDSILSIPIASSVESLNASVAAGVVLADFARQR 320


>gi|312216567|emb|CBX96517.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1292

 Score = 40.4 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 24/54 (44%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +   ++ G E+ G+T E + + +  +      +  SLN+  A  + ++E     
Sbjct: 1235 KKCVVVLGSEKGGITPEVLTVIDRCVEIKTVGVTRSLNVQTAGGIALYEWWREW 1288


>gi|296158889|ref|ZP_06841717.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
 gi|295890764|gb|EFG70554.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
          Length = 261

 Score = 40.4 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 16/167 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
            L +      ++L   Q   N+G + R+     + Q     P   +  S K   S   A 
Sbjct: 106 PLPDEVAQTCLVLDGVQDAGNVGSILRSAAAAGIQQ-VFCAPGTAYAWSSKVLRSGMGAH 164

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++   ++  ++ EA A +  + A           ++                  +  +F
Sbjct: 165 FLL---QIHEDV-EAQALIERLAA----------PIVITDSHGAEAIYDCDLSGPLAWVF 210

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++       +  ++ P      SLN++ A  + V+E     
Sbjct: 211 GNEGAGVSQIWRDAVSLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQ 257


>gi|257455359|ref|ZP_05620594.1| aspartate carbamoyltransferase [Enhydrobacter aerosaccus SK60]
 gi|257447321|gb|EEV22329.1| aspartate carbamoyltransferase [Enhydrobacter aerosaccus SK60]
          Length = 348

 Score = 40.4 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 14/76 (18%)

Query: 31  VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           VAR    A+    + ++R+V P+   P    R            V V+++L  A+ D   
Sbjct: 204 VARSDIAALKTLGVKEIRVVAPKTLLPKGIERY----------GVNVYNDLDAAVVDCDV 253

Query: 87  IYATTARNRNNFKSVL 102
           I     +N      +L
Sbjct: 254 IIGLRIQNERIGSPLL 269


>gi|148265779|ref|YP_001232485.1| hypothetical protein Gura_3759 [Geobacter uraniireducens Rf4]
 gi|146399279|gb|ABQ27912.1| Uncharacterized protein-like protein [Geobacter uraniireducens Rf4]
          Length = 193

 Score = 40.4 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 26/154 (16%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NA------DCVIDSVRVFSNLKE 79
           +AR+   F L +  ++ P     +   R  S       A         ++ ++V  +L  
Sbjct: 40  IARSAKTFGLYRYYVITPVAEQRTLSERIRSHWLDGWGATYNPKRKAALELMQVVDSLDM 99

Query: 80  AIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           A+ DL         I  T A+ R N    ++  +   +  +     Q   ++FG   WG+
Sbjct: 100 ALDDLEKSHGKRAKIVVTGAQGRANS---ISSAQLGELFRDAA---QPYLLLFGT-GWGM 152

Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
           T E    ++ ++        +  L++  A  +++
Sbjct: 153 TEEIFNRADYVLEPIKGRGTYNHLSVRSAAAIIL 186


>gi|307702986|ref|ZP_07639933.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|307623379|gb|EFO02369.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
          Length = 212

 Score = 40.4 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 19/163 (11%)

Query: 8   LQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
           L +  +G  + L D Q   N+G + R       T   +V+ +           S      
Sbjct: 62  LPDFRQGKYLFLEDVQDPGNVGTMIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHF 120

Query: 68  ---IDSVRVFSNLKEAIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              I  + + S ++EA      I ATT +R+  +++               + S +N  +
Sbjct: 121 HLPIYRMPLVSFVEEAKKSNLPILATTLSRDSKDYR--------------ELSSLENFVL 166

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           + G E  G+++     ++ ++   +     SLN++ A  ++++
Sbjct: 167 VMGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 209


>gi|237821623|ref|ZP_04597468.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 135

 Score = 40.4 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 39/158 (24%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDG--------------WPSEKARSSSANADCVIDS 70
             N+G + R       T   +V+ +                         ++ A  ++D 
Sbjct: 2   PGNVGTIIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA--LLDE 58

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            +       AI     + ATT       K  +  +E   +        +N  ++ G E  
Sbjct: 59  TKKV-----AIP----VLATT-----LSKDSVDYRELPSI--------ENFVLVMGNEGQ 96

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           G++      ++ ++   +     SLN++ A  ++++  
Sbjct: 97  GISPLMAESADQLVHISMKGQAESLNVAVAAGILIFHL 134


>gi|325120191|emb|CBZ55745.1| putative RNA methyltransferase, TrmH family domain-containing protein
            [Neospora caninum Liverpool]
          Length = 2918

 Score = 40.4 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 110  VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
             + E     +   ++ G E+ GL    +AL +A I  P   L  SLN+     ++VWE  
Sbjct: 2852 EMLENATFERKTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYT 2911

Query: 170  ENSIVSS 176
            +   + +
Sbjct: 2912 KQHALGA 2918


>gi|167624575|ref|YP_001674869.1| tRNA/rRNA methyltransferase SpoU [Shewanella halifaxensis HAW-EB4]
 gi|167354597|gb|ABZ77210.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella halifaxensis
           HAW-EB4]
          Length = 174

 Score = 40.4 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 39/165 (23%)

Query: 15  PVIILVDPQLGENIGMVARAMWNFNLT------------QLRLVNPRDGWPSEKARSSSA 62
             I LV+P+   N+G + RA+                  +L   N    + ++  R+SS+
Sbjct: 7   VAIGLVNPKSPTNVGGIMRAV---GCYSADAVFYTGKRYELASTNGSAQYNTDTKRASSS 63

Query: 63  NADCVIDSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                I   +V  +L +AI  D+  +              +   E AI L E     +  
Sbjct: 64  -----IPLSKV-ESLLDAIEPDVKVVC-------------VDLVEGAIPLPEFEHP-EKA 103

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             IFG E   ++ + +  ++A++  P       +N++ +V ++++
Sbjct: 104 IYIFGPEDGTISQQVVNGADAVVYVPT---VGCMNLAASVNVLLY 145


>gi|307128744|ref|YP_003880774.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
 gi|306483206|gb|ADM90076.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
          Length = 246

 Score = 40.4 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLMVWECMENS 172
                I G E  G++   +++ N  +  P+      SLN+S A   +++E +   
Sbjct: 189 NPTAFILGNEEKGISKNYLSICNNTVKLPLLKNSLSSLNVSVACGAILYEAIRQR 243


>gi|262172137|ref|ZP_06039815.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
 gi|261893213|gb|EEY39199.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
          Length = 244

 Score = 40.4 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHKTAFKAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|329939002|ref|ZP_08288376.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301887|gb|EGG45780.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 272

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 20/139 (14%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAI- 81
           NIG + R+     +    L++P    P   ++   S  A   +   R+     +L     
Sbjct: 132 NIGAIFRSAAALGM-DAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEQWPGSLAAVTE 190

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ-NVGIIFGRERWGLTNEEIALS 140
           A    +              L P   A  L+E     +  V ++ G E  GL+   +A +
Sbjct: 191 AGFDLLA-------------LTPDAGARSLDEAAPHRRDRVALMLGAEGDGLSRRALAAA 237

Query: 141 NAIISFPVNPLFPSLNISQ 159
           +  +  P++    SLN+  
Sbjct: 238 DEPVRIPMSHGVDSLNVGA 256


>gi|302530010|ref|ZP_07282352.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
 gi|302438905|gb|EFL10721.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
          Length = 233

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           Q    + G E  G+      L    +S P+     SLN+S A  ++ +E +   +
Sbjct: 178 QRSAFVLGGETEGVGEAVAELVTEWLSIPMPGDVESLNVSAAAAVLSFELVRRGV 232


>gi|258627222|ref|ZP_05722010.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580524|gb|EEW05485.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 244

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +          + K  S++  +   + 
Sbjct: 97  PKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +V  +L + +A  +               V       + +++  F  + + ++ G E 
Sbjct: 157 VSQV--DLPDYLAKANL-------------PVYGAFLEGVSVHQTAFKAEGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|262379400|ref|ZP_06072556.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262298857|gb|EEY86770.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 263

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL + Q   N+G + R+    N+ Q+          S +   +   A   ++   ++ 
Sbjct: 121 TLILENVQDPGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLN---IYE 177

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N++  + D+                V            +    Q    I G E  G +  
Sbjct: 178 NVQ--LEDI---------LEKFEIPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAY 226

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  + A++  P      SLN++ A  +  +E +   +
Sbjct: 227 ALQHAKAVV-IPQPGGQESLNVAVAGSICFFEMVRQRL 263


>gi|255319437|ref|ZP_05360652.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|255303505|gb|EET82707.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
          Length = 258

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL + Q   N+G + R+    N+ Q+          S +   +   A   ++   ++ 
Sbjct: 116 TLILENVQDPGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLN---IYE 172

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           N++  + D+                V            +    Q    I G E  G +  
Sbjct: 173 NVQ--LEDI---------LEKFEIPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAY 221

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +  + A++  P      SLN++ A  +  +E +   +
Sbjct: 222 ALQHAKAVV-IPQPGGQESLNVAVAGSICFFEMVRQRL 258


>gi|239617839|ref|YP_002941161.1| hypothetical protein Kole_1465 [Kosmotoga olearia TBF 19.5.1]
 gi|239506670|gb|ACR80157.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
          Length = 188

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 69  DSVRVFSN---LKEAIADLHFI-------YATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           +++ V      L++A+ D+  I         T+AR            EA   + +   S 
Sbjct: 80  EALTVVRTASYLEDALEDIEKIEGVKPKLIFTSARKG----PDRISYEAMSKIVK--TSK 133

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
           +    +FG   WGL  E + L +  +     N  F  L++  AV +++
Sbjct: 134 EPFLFLFGT-SWGLPKEILDLCDYALEPIRGNASFNHLSVRAAVAIIL 180


>gi|327462015|gb|EGF08344.1| SpoU rRNA methylase [Streptococcus sanguinis SK1057]
          Length = 246

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 25/50 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++  ++ G E  G++ E    ++ ++   +     SLN++ A  ++++  
Sbjct: 196 ESFALVMGNEGQGISPEMTEAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
          Length = 248

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 15/164 (9%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             PQ+  +A   V+IL   Q   N+G + R      L  + +         +K   +S  
Sbjct: 95  EKPQVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRASQG 154

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVG 122
           +   I  ++   +              +A   +    +     + A   ++         
Sbjct: 155 SVFHIP-IQYVDD-------------MSAWMSSFKGPIYGTALQDATTYHQVASQQDTFA 200

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +I G E  G+  + +A +   +  P+     SLN++ A  ++++
Sbjct: 201 LILGNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGILMF 244


>gi|312195570|ref|YP_004015631.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
 gi|311226906|gb|ADP79761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
          Length = 308

 Score = 40.4 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 16/84 (19%)

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ---NVGIIFGRERWGLTNEEIALSNA 142
            + AT+                A  L E   +G+     G +FG E  GL+ + +A ++A
Sbjct: 216 RVVATSG-------------HGARDLYEAADAGELDGPTGWLFGNEAHGLSPDALAAADA 262

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
           ++  PV     SLN++ A  L ++
Sbjct: 263 VLRVPVYGQAESLNLAVATALCLY 286


>gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 246

 Score = 40.4 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +  L ++        +     ++    V     V ++L+  I 
Sbjct: 114 QDPGNLGTLIRTADAAGI-DLIVMEKGTADAYQDKVLRASQGS-VFHIPVVTADLQGFIK 171

Query: 83  DLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                ++ T   N  ++K+ L P+E                ++ G E  G+ N  +  + 
Sbjct: 172 QFEGPVFGTALENAVSYKN-LDPQE-------------TFALLLGNEGDGVNNALLEHTT 217

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
             +  P+     SLN++ A  ++++  
Sbjct: 218 KNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|167763027|ref|ZP_02435154.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC
           43183]
 gi|167699367|gb|EDS15946.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC
           43183]
          Length = 253

 Score = 40.4 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 33/161 (20%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FSNLKEA 80
           Q   N+G + R    F +      +P      + K   ++      I  V++ + +L E 
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDVYNPKTVQATMGG---IARVKLHYISLPEL 167

Query: 81  IADLHF--IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           IA L    +Y T     N +   L+                   I+ G E  G+ +E   
Sbjct: 168 IASLEDIPVYGTFLDGENMYTQPLS---------------AYGLIVMGNEGNGIGDEVKR 212

Query: 139 LSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
           L N  +  P    +P       SLN++ A  ++  E    +
Sbjct: 213 LINRKLYIP---NYPAERETSESLNVAIATAVVCAEFRRQA 250


>gi|330924237|ref|XP_003300564.1| hypothetical protein PTT_11833 [Pyrenophora teres f. teres 0-1]
 gi|311325249|gb|EFQ91337.1| hypothetical protein PTT_11833 [Pyrenophora teres f. teres 0-1]
          Length = 1272

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +   ++ G E+ G++ E +A+ +  +      +  SLN+  A  + ++E     
Sbjct: 1215 KKCCLVLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQTAGGIALYEWWREW 1268


>gi|188527602|ref|YP_001910289.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
 gi|188143842|gb|ACD48259.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
          Length = 227

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +   +  G E  GL+ + +A  + I+S  +   F SLN+S A  ++
Sbjct: 177 KKCTLFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGIL 222


>gi|289450233|ref|YP_003475064.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184780|gb|ADC91205.1| RNA methyltransferase, TrmH family, group 3 [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 307

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 31/167 (18%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +II  + Q   N+G + R   +  +    +V P+    +  A ++ A+A           
Sbjct: 159 IIIADEIQDSYNLGAILRTAESAGVHG--VVFPKHRQVTLDAVTAKASAG---------- 206

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ----------NVGIIF 125
               A+  +       AR  N  +++   K   + +      G+           + ++ 
Sbjct: 207 ----AVNHVP-----CARVNNLVQTMNYLKGKGVWIAGLNMDGESIFDNKKMTGPIALVV 257

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           G E  G++       +  +S P+  +  SLN + A  + V+E +   
Sbjct: 258 GNEGKGISRLVADNCDFTVSIPMQGVLNSLNAAVATGIAVFETLRLR 304


>gi|228476493|ref|ZP_04061183.1| rRNA methylase [Streptococcus salivarius SK126]
 gi|228251914|gb|EEK10960.1| rRNA methylase [Streptococcus salivarius SK126]
          Length = 245

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 59/166 (35%), Gaps = 15/166 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           +  L  S  G  ++L D Q   N+G + R         + L +      ++K   S   +
Sbjct: 93  SQALPESLSGKYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGS 152

Query: 65  DCVID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +      +   ++        + ATT  +               V  + + +  N  
Sbjct: 153 HFHLPIYRGPILDMVEACKKQGVPVLATTLSD-------------ISVDYKAVKTDGNFA 199

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++ G E  G++ +    ++ ++   +     SLN++ A  ++++  
Sbjct: 200 LVMGNEGQGISQDMAESADQLVHISMPGQAESLNVAVAAGILMFSL 245


>gi|224012188|ref|XP_002294747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969767|gb|EED88107.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 156

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVWECME 170
           +  I+ G E  G+++++++L +  +       F     SLN+S A  L++     
Sbjct: 94  SAAIMMGNEGSGMSSKQMSLCDGFVRI---SQFGGGTASLNVSVAAGLVLHRYFH 145


>gi|169334564|ref|ZP_02861757.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259281|gb|EDS73247.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
           17244]
          Length = 252

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 29/154 (18%)

Query: 23  QLGENIGMVAR--AMWNFNLTQLRLVNPRDGWPSEKARSSSANA----DCVIDSV-RVFS 75
           Q  EN+G + R     +F      ++N        KA  +SA +      ++D   ++  
Sbjct: 118 QDPENVGGLIRSSVCTDF---DAVILNSSASPFLSKAVRASAGSIINTKIILDEDYKILK 174

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
            LKE       I A+T   +                 +   + +N  +I G E  G+++E
Sbjct: 175 TLKE--KGFD-IIASTLNGKE----------------DITLNKKNNVLIVGNEGNGISDE 215

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
            +  +   +  P++    SLN + +  +++++  
Sbjct: 216 CLKYATKEVKIPMSGKCESLNANVSGSILMYKIY 249


>gi|126314205|ref|XP_001370297.1| PREDICTED: similar to RNA methyltransferase like 1 [Monodelphis
           domestica]
          Length = 517

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWE 167
           +  ++     ++ G E  G++ E + L+ +     +  PV P   SLN + A  ++++E
Sbjct: 351 DAAWTDAPAAVVIGGETHGVSLESLHLAESTGGKRLLIPVVPGVDSLNSAMAASILLFE 409


>gi|171780263|ref|ZP_02921167.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281611|gb|EDT47046.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 218

 Score = 40.4 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 56/156 (35%), Gaps = 21/156 (13%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L D Q   N+G + R      L  + +        ++K   S   +   +      +N+
Sbjct: 78  VLEDVQDPGNVGTMIRTADAAGLDGVLISEKTADIYNQKTLRSMQGSHFHLP--VWCTNV 135

Query: 78  KEAIA-----DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
            EA        +  +  T +++  ++K+V                     ++ G E  G+
Sbjct: 136 YEACQKLQSLGVPLVATTLSKDSVDYKTV--------------EHKGEFALVMGNEGNGI 181

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + +    ++ +    +     SLN++ A  ++++  
Sbjct: 182 SEQMTKQADILAHIIMPGQAESLNVAVATGIVLFSL 217


>gi|332883970|gb|EGK04250.1| hypothetical protein HMPREF9456_01278 [Dysgonomonas mossii DSM
           22836]
          Length = 250

 Score = 40.4 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 21/163 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-F 74
           V+ L   Q   N+G + R    + +  +          + K   ++  A   +  V + +
Sbjct: 104 VLALDGIQDPGNMGTIIRLADWYGIHHIFCSQDTVDVYNPKVVQATMGA---LARVNIHY 160

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++L + +             RN   SV         + E+  +   + I+ G E  G+  
Sbjct: 161 TDLSDFL------------TRNKHLSVYGTFLDGENMYEKKITSHGI-IVMGNEGNGIRP 207

Query: 135 EEIALSNAIISFP----VNPLFPSLNISQAVLLMVWECMENSI 173
           E   L    +  P     NP   SLN++ A  ++  E    ++
Sbjct: 208 EIERLITEKLYIPNYPVGNPTSESLNVAIATAIICAEFRRRNL 250


>gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius
           ED99]
          Length = 248

 Score = 40.0 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 15/164 (9%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             PQ+  +A   V+IL   Q   N+G + R      L  + +         +K   +S  
Sbjct: 95  EKPQVDVTAAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRASQG 154

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL-APKEAAIVLNERIFSGQNVG 122
           +   I  ++   +              +A   +    +     + A   ++         
Sbjct: 155 SVFHIP-IQYVDD-------------MSAWMSSFKGPIYGTALQDATTYHQVASQQDTFA 200

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +I G E  G+  + +A +   +  P+     SLN++ A  ++++
Sbjct: 201 LILGNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGVLMF 244


>gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
           F0396]
 gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
           F0396]
          Length = 245

 Score = 40.0 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 27/56 (48%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + + +  N  ++ G E  G++ E    +N ++   +     SLN++ A  ++++  
Sbjct: 190 KAVKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAVAAGILMFSL 245


>gi|224539871|ref|ZP_03680410.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518520|gb|EEF87625.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 253

 Score = 40.0 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF----SNL 77
           Q   N+G + R    F +      +P      + K   ++      I  V++      +L
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDVYNPKTVQATMGG---IARVKLHYTPLPDL 167

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +++ D+  +Y T     N +              +++ S     I+ G E  G+  E  
Sbjct: 168 IQSLKDIP-VYGTFLDGENMY-------------TQKLSSNGL--IVMGNEGNGIGKEVE 211

Query: 138 ALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            L N  +  P    +P       SLN++ A  ++  E    +
Sbjct: 212 QLINRKLYIP---NYPAERETSESLNVAIATAVVCAEFRRQA 250


>gi|157874196|ref|XP_001685588.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128660|emb|CAJ08792.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 2043

 Score = 40.0 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 15/179 (8%)

Query: 4    YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP-RDGWPSEKARSSSA 62
            +   L+   +  +++    +   NI  + R    F +    +V P +  +      +++ 
Sbjct: 1875 HPRSLRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVES--IVVPEKKVFEHPHFVAAAR 1932

Query: 63   NADCVIDSVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQN 120
            +A+  I    V   +L   +  L        R R     V+  ++ A  +  E+    + 
Sbjct: 1933 SAELWIPWEEVAPKDLPCYLEGL--------RRRGYV--VVGIEQTAASVPLEQFSFPER 1982

Query: 121  VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
              ++ G E  G+    I L +  +  P   L  SLN+  A  + ++E     +++    
Sbjct: 1983 CAVVLGAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHLMAQSHP 2041


>gi|322375834|ref|ZP_08050345.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
 gi|321279102|gb|EFX56144.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
          Length = 252

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV---IDSVRVFSNLKE 79
           Q   N+G + R       T   +V+ +           S         I  + + S ++E
Sbjct: 117 QDPGNVGTMIRTADAAGFTG-VIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLVSFVEE 175

Query: 80  AIADLHFIYATT-ARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           A      I ATT +R   +++               + S +N  ++ G E  G+++    
Sbjct: 176 AKKSNLPILATTLSRESKDYR--------------ELSSLENFVLVMGNEGQGISSVMAE 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVW 166
            ++ ++   +     SLN++ A  ++++
Sbjct: 222 SADQLVHIGMKGRAESLNVAVAAGILMF 249


>gi|315640649|ref|ZP_07895754.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315483588|gb|EFU74079.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 251

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            V +I G E  G+  E +A ++A +  P+     SLN+  A  ++++
Sbjct: 202 QVALIMGNEGQGVAKEILAQTDANLYIPIYGKAESLNVGIAAGILMY 248


>gi|326478018|gb|EGE02028.1| RNA methyltransferase [Trichophyton equinum CBS 127.97]
          Length = 572

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 17/179 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82
             N+G + R+ + F    +   +      S     ++A A   I   SVR  S    A  
Sbjct: 388 PGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQ 447

Query: 83  DLHF-IYATTARNRNNFKSVLA--PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
              +  +A  A +           P   ++       +     ++ G E  GL  +    
Sbjct: 448 ANGWKFFAADAPDATLVNDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNR 507

Query: 140 SNAIISFPVN---------PLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQNTPA 187
           +++ ++ P               SLN+S A  L+  E       +  S +     +TPA
Sbjct: 508 ADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC-EAFLSRRPLSGSVETQDSLDTPA 565


>gi|323494049|ref|ZP_08099165.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
 gi|323311676|gb|EGA64824.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
          Length = 244

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 20/164 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN--ADCV 67
             A+G +I L       N+G + R    + +  +          + K  S++        
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVT 156

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +  + + + L++A                    V         ++   FS Q + ++ G 
Sbjct: 157 VSQLDLPAYLEQA-----------------NLPVYGAFLEGESVHRTEFSAQGI-LLMGS 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  G+  +        I+ P      SLN++ A  +++      
Sbjct: 199 ESHGVREQAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQ 242


>gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 265

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           Q + ++ G E  G + E  AL +  I+ P+     SLN + A  ++++E +     + 
Sbjct: 208 QPLALVIGGEAEGASLEMRALVDGNITIPMPGKSESLNAAVAAGILLFEVVRQRRQAP 265


>gi|190892787|ref|YP_001979329.1| tRNA/rRNA aminotransferase/methyltransferase [Rhizobium etli CIAT
           652]
 gi|190698066|gb|ACE92151.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 153

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVFS 75
           L  P +  N G + R         + L+ P     S++    S     A   +     + 
Sbjct: 8   LYQPDIAGNTGTILRLAACLGFA-VDLIEPAGFDVSDRNLKRSGMDYIAAAALTRHVSWD 66

Query: 76  NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +   A      I A+T            P +                ++ GRE  G+ 
Sbjct: 67  RFEAWRATTGRRLILASTKAADRYTDFTFRPDDI---------------LLLGRESAGVP 111

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +     ++A I  P+     S+N++ +  ++V E M  ++
Sbjct: 112 DHVHERADARILIPMVEGQRSINVAVSAAMIVGEAMRQTV 151


>gi|331006116|ref|ZP_08329450.1| RNA methyltransferase, TrmH family [gamma proteobacterium IMCC1989]
 gi|330420095|gb|EGG94427.1| RNA methyltransferase, TrmH family [gamma proteobacterium IMCC1989]
          Length = 136

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                IFG E   L  E   L   ++  P       +N++  V ++++
Sbjct: 73  ARAFYIFGPEDGTLKKEITDLCEDVVYIPTEGC---MNLAATVNVVLY 117


>gi|262282150|ref|ZP_06059919.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262262604|gb|EEY81301.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 246

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 28/52 (53%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +++   +N  ++ G E  G+++   A ++ ++  P+     SLN++ A  ++
Sbjct: 190 QKLKGSKNFILVMGNEGQGISSMIEAAADQLVHIPMKGKAESLNVAVAAGIL 241


>gi|322826123|gb|EFZ30881.1| hypothetical protein TCSYLVIO_2824 [Trypanosoma cruzi]
          Length = 383

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 32/214 (14%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + S  G V++LV  ++  N+G++ RA  +       L++       EK    ++      
Sbjct: 167 KPSRLGSVLVLVGLRIPSNVGVLIRAAVDMGFES-VLLDDCVDVFHEK-VLRASGGRVFS 224

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA----PKEAAIVLNERIFSGQNV--- 121
            ++++F               ++    +    +LA      E A  +  R+         
Sbjct: 225 PNIKIFET-----HGASIPLLSSIALEHQLLPLLALPSREAEPAFQVARRLHESNAARRR 279

Query: 122 ---------------GIIFGRERWGLTNEEIALS--NAIISFPV-NPLFPSLNISQAVLL 163
                           ++ G E  GL   E   +     +S P+ N    S+N+S A  +
Sbjct: 280 NRDPDAGSTDDHLGPMLVLGSESKGLRGLEGEWTVPYRAVSIPLPNSFIDSINVSVAGSV 339

Query: 164 MVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           ++      +     K  +      +   +   L 
Sbjct: 340 LLHAFRPAAEKYIAKTAEALLNACSAAGIQPLLA 373


>gi|319946452|ref|ZP_08020689.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
 gi|319747420|gb|EFV99676.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
          Length = 254

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 15/144 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF-SNLKEAI 81
           Q   N+G + R         + L +      + K   S   +   +  +R+    L  AI
Sbjct: 117 QDPGNVGTMIRTADAAGFDGVLLTDQSADLYNMKTLRSMQGSHFHLPVIRLPKEQLLTAI 176

Query: 82  ADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            +    IYATT                  V  +++       ++ G E  G++++    +
Sbjct: 177 EESQLPIYATTLSQ-------------NSVDYKQVEKVPAFVLVMGNEGQGISSKMAESA 223

Query: 141 NAIISFPVNPLFPSLNISQAVLLM 164
           + ++   +     SLN++ A  ++
Sbjct: 224 DQLVHITMPGQAESLNVAVAAGIL 247


>gi|330931647|ref|XP_003303484.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
 gi|311320500|gb|EFQ88423.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
          Length = 657

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 66/186 (35%), Gaps = 43/186 (23%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADC------------VIDS 70
             N+G +AR+ +   +    ++ P       S  A  +S+ A               + S
Sbjct: 484 EGNLGAIARSAYVLGVD--AIITPTHHTAEWSPIAIKASSGAAEAIPLFRVKEPEQFLHS 541

Query: 71  V-----RVFSNLKEAI----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                 R++++  +A+     D   +    A+  +   +  +P            +    
Sbjct: 542 SSQVGWRIYAS--DAVPLSKQDGRQVVYAVAKKYSPLPAYHSP-----------LAEHPT 588

Query: 122 GIIFGRERWGLTNEEIALSNAIISFP---VNPLFP--SLNISQAVLLMVWECMENSIVSS 176
            ++ G E  G+      +++  +  P           S N+S A  ++ ++ M+    ++
Sbjct: 589 ILMMGSEHSGVKKHLAKMAHYKVGIPHGRSVDEVGVDSFNVSVATGILCYQMMQKPQAAA 648

Query: 177 EKNVKE 182
           E++ K+
Sbjct: 649 ERDPKD 654


>gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 262

 Score = 40.0 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 19/170 (11%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA 64
           PQ  + +   +++L   Q   N+G + R+     + Q L L    D W S K   S    
Sbjct: 106 PQFTSQSASLILMLDGVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVW-SPKVVRSGMGV 164

Query: 65  DCVIDSVRVFSNL--KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +    +   L  + A+  +              +   A  + + +  ++    Q   
Sbjct: 165 HFRLP---IVDGLNWETALPLIEHC-----------QQRFAAVQDSPLSYDQADLTQPTV 210

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +I G E  G++   ++ S+ I + P+     SLN + A  ++++E     
Sbjct: 211 LIIGNEANGVSATTLSYSSTI-TIPMLGSLESLNAAVAGSVLLFEAARQR 259


>gi|330446225|ref|ZP_08309877.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490416|dbj|GAA04374.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 170

 Score = 40.0 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 23/154 (14%)

Query: 16  VII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
           VII L +P+   N+G V RA       +         +   +   ++          +  
Sbjct: 6   VIIGLTNPKSPTNVGAVLRAA---GCYK----ADAVTYTGTRYDLAAKFQTDTKKMAQTI 58

Query: 75  SNL--KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
             L  +  + DL            + K V         L       +    IFG E   +
Sbjct: 59  PLLGVESFLDDL----------PQDMKIVCVDFAEGATLLPHFEHPEKAIYIFGPEDGSI 108

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             +    ++ ++  P       +N++ +V ++++
Sbjct: 109 AQDVADKADHVVYVPT---VGCMNLAASVNVVLY 139


>gi|326473173|gb|EGD97182.1| hypothetical protein TESG_04597 [Trichophyton tonsurans CBS 112818]
          Length = 572

 Score = 40.0 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 17/179 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82
             N+G + R+ + F    +   +      S     ++A A   I   SVR  S    A  
Sbjct: 388 PGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQ 447

Query: 83  DLHF-IYATTARNRNNFKSVLA--PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
              +  +A  A +           P   ++       +     ++ G E  GL  +    
Sbjct: 448 ANGWKFFAADAPDATLVNDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNR 507

Query: 140 SNAIISFPVN---------PLFPSLNISQAVLLMVWECM--ENSIVSSEKNVKEQNTPA 187
           +++ ++ P               SLN+S A  L+  E       +  S +     +TPA
Sbjct: 508 ADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLC-EAFLSRRPLSGSVETQDSLDTPA 565


>gi|239917665|ref|YP_002957223.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|281413844|ref|ZP_06245586.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239838872|gb|ACS30669.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 280

 Score = 40.0 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 16/151 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE---AIAD 83
           N+G V R+        L L          +A   S      +   R+   + E   A+  
Sbjct: 140 NLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAESLPALRA 199

Query: 84  LHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
             F  A    T R        + P          + + + + ++ G+E  G+  E +A +
Sbjct: 200 AGFAVAALEVTERAVGLDSPEIEP----------LRTAERLALVLGQEGPGVRPETLAQT 249

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +A +  P+     SLN++ A  + +WE    
Sbjct: 250 DADVVIPMPDGVDSLNVAAAAAVALWELRAR 280


>gi|315425962|dbj|BAJ47611.1| conserved hypothetical protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 278

 Score = 40.0 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             RV  +L+EA+    F  AT+ R       V         + +R+       ++FG   
Sbjct: 172 RTRVVKSLEEALKPYTFRLATS-RLGEPINQVY------ATVAQRLKESTQTCVVFGAAD 224

Query: 130 WGLTNEEIALSNAI 143
            GL   EIA ++ +
Sbjct: 225 KGL--HEIARAHGL 236


>gi|326566884|gb|EGE17023.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
 gi|326575114|gb|EGE25042.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
 gi|326576800|gb|EGE26707.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
          Length = 258

 Score = 40.0 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
            +  G  +IL   Q   NIG + R      +    + +P      S K   +   A    
Sbjct: 107 PTISGDCLILDGLQDLGNIGTLLRTASAVGIQT-VITSPNTAHLWSPKCLRAGMGAHF-- 163

Query: 69  DSVRVFSNL--KEAIADLHF-IYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            S+ ++ ++   E +  L   +YAT++  N+  +   L                  +  +
Sbjct: 164 -SMSIYEHIAVDEILQKLKTPLYATSSHTNKVIYDHDLT---------------GPIAWV 207

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+ +E +  +   I+ P      SLN+  A  +  +E +   
Sbjct: 208 LGHEGQGVRDEFLNNA-IPIALPQPGGQESLNVGIAGSVCFYEMLRQR 254


>gi|318040410|ref|ZP_07972366.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CB0101]
          Length = 261

 Score = 40.0 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 18/162 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRL---VNP--RDGWPSEKARSSSANADCVIDS 70
           V+ L   Q   N+G + R      + ++ L    +P       +    + +     + D 
Sbjct: 111 VLALDQLQDPGNLGTLLRTALAAGVDEVWLGGGADPLQPKVLRASAGAALALPLLRLSDR 170

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
             +   L+ A+A    + AT          ++ P         ++   +   ++ G E  
Sbjct: 171 SELLPLLERAVAAGRQLAAT----------LVQPGVQPYW---QLDWTRPTVLLLGNEGA 217

Query: 131 GLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           GL  +  AL+   I+ P +    SLN++ A   ++ E     
Sbjct: 218 GLHPQLAALATHRITIPHSAAVESLNVAVAAAPLLLERWRQQ 259


>gi|221502243|gb|EEE27981.1| rRNA methylase, putative [Toxoplasma gondii VEG]
          Length = 440

 Score = 40.0 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            + ++ G E+ G + E +   + I +        SL++S A  ++++   + +++   + 
Sbjct: 367 RLAVVVGNEQKGSSREVLDACDGIAAI-AQVKGDSLSVSTAAAVVLYTLQQETLIKLREQ 425

Query: 180 VK 181
           V 
Sbjct: 426 VP 427


>gi|271970249|ref|YP_003344445.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
 gi|270513424|gb|ACZ91702.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
          Length = 274

 Score = 40.0 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +    P    NIG + R+   F    L +          K+  +S  +   +  VR   +
Sbjct: 118 VAFDRPGNPGNIGTLVRSADAFGAAGLIVTGHAADVYDPKSVRASTGSLFSLPVVRR-PS 176

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             + +    ++ A   R+      ++   E+               ++ G E  G++   
Sbjct: 177 PDDVL---DWVGA--QRDGGLPIRIVGTDESGSTPISGCDLTVPTLLVVGNETAGMSARW 231

Query: 137 IALSNAIISFPV 148
             + + ++  P+
Sbjct: 232 REMCDEVVRIPM 243


>gi|71281665|ref|YP_270768.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71147405|gb|AAZ27878.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
          Length = 194

 Score = 40.0 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E A  L   I   + V  IFG E   +  E I +++ ++  P       +N++  V +++
Sbjct: 104 EGATPLPHFIHPPEAV-YIFGPEDSSVKQEVIDIADDVVYVPT---VGCMNLAATVNVLL 159

Query: 166 WECMENSIVSSEKNVKEQNTP 186
           ++ +  S+ + + ++   N  
Sbjct: 160 YDRLAKSLTNQKDSMLADNEL 180


>gi|327188344|gb|EGE55561.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli CNPAF512]
          Length = 154

 Score = 40.0 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 21/160 (13%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN---ADCVIDSVRVFS 75
           L  P +  N G + R         + L+ P     S++    S     A   +     + 
Sbjct: 9   LYQPDIAGNTGTILRLAACLGFA-VDLIEPAGFDVSDRNLKRSGMDYIAAAALTRHVSWD 67

Query: 76  NLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
             +   A      I A+T            P +                ++ GRE  G+ 
Sbjct: 68  RFEAWRATTGRRLILASTKAADRYTDFTFRPDDI---------------LLLGRESAGVP 112

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +     ++A I  P+     S+N++ +  ++V E M  ++
Sbjct: 113 DHVHERADARILIPMVEGQRSINVAVSAAMIVGEAMRQTV 152


>gi|262173677|ref|ZP_06041354.1| predicted rRNA methylase [Vibrio mimicus MB-451]
 gi|261891035|gb|EEY37022.1| predicted rRNA methylase [Vibrio mimicus MB-451]
          Length = 152

 Score = 40.0 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL  +   TA    + + V                 +    +FG E   L  + +  ++ 
Sbjct: 37  DLVEMVDLTAGLDQDVEIVCVELVVGATALPHFEHPEKAIYLFGPEDGSLPQDVVDKAHH 96

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           ++  P +     +N++  V +++++ M  S+ +
Sbjct: 97  VVYVPTHGC---MNLAATVNVVMYDRMAKSLGA 126


>gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9]
 gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9]
 gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03]
          Length = 245

 Score = 40.0 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 27/56 (48%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + + +  N  ++ G E  G++ E    +N ++   +     SLN++ A  ++++  
Sbjct: 190 KAVKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAVAAGILMFSL 245


>gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus]
 gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 320

 Score = 40.0 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 20/161 (12%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSN 76
           +L   Q   N+G V R+ +   + +  + + R+  P +     +SA A  V+D   VF++
Sbjct: 147 VLEGIQDPRNLGAVMRSAYFLGVDR-VITSRRNSCPLTPVVSKASAGAMEVMD---VFAS 202

Query: 77  ------LKEAIADLHFIYATTARNR-NNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                 L+        +  T         +S   P  + +         +   ++ G E 
Sbjct: 203 PDLASFLQAKAQQGWLVVGTVGCPGPEISQSSKVPVTSCLEFI----WDRPTLLVLGNEG 258

Query: 130 WGLTNEEIALSNAIISF-PVN---PLFPSLNISQAVLLMVW 166
            GL+    A    +++  P     P   SLN+S A  +++ 
Sbjct: 259 SGLSQGVFATCQLLLTILPGRHLPPGLESLNVSVATGILLH 299


>gi|332530820|ref|ZP_08406746.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332039732|gb|EGI76132.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 271

 Score = 40.0 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 21/154 (13%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
            ++L   Q   N+G + R+   F   Q L L      W S K   +   A   +      
Sbjct: 126 TVVLDRVQDAGNVGSILRSAAAFGCAQVLALKGTAALW-SPKVLRAGMGAHFGLR----- 179

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
             L E +A                  +L        L  R         + G E  G+  
Sbjct: 180 --LVEGLAADDLAV--------LQVPLLVTSSHQGELLHRAHLPWPCAWVLGHEGQGVGE 229

Query: 135 EEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
             +A +   +    P      SLN++ A  + + 
Sbjct: 230 ALMARAALKLRIAQPGGEE--SLNVAAAAAICLH 261


>gi|258508716|ref|YP_003171467.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148643|emb|CAR87616.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|259650023|dbj|BAI42185.1| rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 253

 Score = 40.0 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 11/168 (6%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           M   A QL +   G  ++L   Q   N+G + R      +  +   N        K   +
Sbjct: 94  MPRQAGQLPDLLSGQFLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRA 153

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              +      VR+ S      A L  +    A  R       +           I     
Sbjct: 154 MQGSQF---HVRIVS------AKLMPVI--KALQRAGIPVYGSELNDKAKSYRSIQPSAQ 202

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            G++ G E  G+    +  ++  +  P+     SLN++ A  +M++  
Sbjct: 203 FGLVVGNEGNGMDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMFHL 250


>gi|237832273|ref|XP_002365434.1| rRNA methylase, putative [Toxoplasma gondii ME49]
 gi|211963098|gb|EEA98293.1| rRNA methylase, putative [Toxoplasma gondii ME49]
          Length = 440

 Score = 40.0 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            + ++ G E+ G + E +   + I +        SL++S A  ++++   + +++   + 
Sbjct: 367 RLAVVVGNEQKGSSREVLDACDGIAAI-AQVKGDSLSVSTAAAVVLYTLQQETLIKLREQ 425

Query: 180 VK 181
           V 
Sbjct: 426 VP 427


>gi|55822234|ref|YP_140675.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|55738219|gb|AAV61860.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
          Length = 245

 Score = 40.0 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 27/56 (48%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + + +  N  ++ G E  G++ E    +N ++   +     SLN++ A  ++++  
Sbjct: 190 KAVKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAVAAGILMFSL 245


>gi|270001605|gb|EEZ98052.1| hypothetical protein TcasGA2_TC000457 [Tribolium castaneum]
          Length = 1259

 Score = 40.0 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 17   IILVDP--QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF 74
             ILV    +   N+G ++R    F + Q+ +         ++ +S S +++   +SV + 
Sbjct: 1109 FILVTTLIEKSTNLGGLSRTCEVFGIKQIVM-RTAKIISDKEFKSLSMSSE---NSVEIL 1164

Query: 75   SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLT 133
                E +A            +    SV+  ++ +  +    F   +   ++ G E+ G+ 
Sbjct: 1165 EVKPEDLASFILNM------KAQGYSVVGAEQTSESVKLDAFRFDKKTVLVLGNEKEGIP 1218

Query: 134  NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             + I L +  I  P   L  SLN+  A  +++WE  + 
Sbjct: 1219 PDLIPLLDHCIEIPQFGLVRSLNVHVAGAIVIWEYCKQ 1256


>gi|146301635|ref|YP_001196226.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146156053|gb|ABQ06907.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 152

 Score = 40.0 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 105 KEAAIVLNERIFSGQ------NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           +   + L+E+    +          + G E  GL+ + +   + ++ F       SLN++
Sbjct: 79  RLVGVELSEKAVDLETFEHPRRCVYLLGAEDHGLSKKAMDKCHHLVKFKSEK---SLNVA 135

Query: 159 QAVLLMVW 166
            A  ++++
Sbjct: 136 VAGTVVMY 143


>gi|254294666|ref|YP_003060689.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254043197|gb|ACT59992.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 165

 Score = 40.0 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 62/167 (37%), Gaps = 25/167 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF--SNLKE- 79
               N+G + R    F  +    V+  D   ++   S ++ A    +++  +   ++++ 
Sbjct: 13  SKPMNMGALMRTAHAFGASFFYSVD-ADVKVTDMYASDTSKAY---ENMPYYNWDSIEDM 68

Query: 80  AI-ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           A+      +              +   + A+ L E     +    + GRE   L+ E +A
Sbjct: 69  ALPRGCQLVG-------------IELTDDAVELPE-FKHPRAAAYVLGRELGNLSPEMMA 114

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
             + I+  P    F   N+S A  L++++ M +    + + +     
Sbjct: 115 KCHHIVKIPT--KFCI-NVSLAGALVMYDRMVSMGAYANRPIMPGGP 158


>gi|71664714|ref|XP_819335.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884631|gb|EAN97484.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 383

 Score = 40.0 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 69/214 (32%), Gaps = 32/214 (14%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           + S  G V++LV  ++  N+G++ RA  +       L++       EK    ++      
Sbjct: 167 KPSRLGSVLVLVGLRIPSNVGVLIRAAVDMGFES-VLLDDCVDIFHEK-VLRASGGRVFS 224

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA----PKEAAIVLNERIFSGQNV--- 121
            ++++F               ++    N    +LA      E A  +  R+         
Sbjct: 225 PNIKIFET-----HGASIPLLSSIALENQLLPLLALPSREAEPAFQVARRLHESNAARRR 279

Query: 122 ---------------GIIFGRERWGLTNEEIALS--NAIISFPV-NPLFPSLNISQAVLL 163
                           ++ G E  GL   E   +     +S P+ N    S+N+S A  +
Sbjct: 280 NRDPDAGSTDDHLGPMLVLGSESKGLRGLEGEWTVPYRAVSIPLPNSFIDSINVSVAGSV 339

Query: 164 MVWECMENSIVSSEKNVKEQNTPATKGELLSFLD 197
           ++      +     K  +      +   +   L 
Sbjct: 340 LLHAFRPAAEKYIAKTTEALLNACSAAGIQPLLA 373


>gi|239916760|ref|YP_002956318.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|281414782|ref|ZP_06246524.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239837967|gb|ACS29764.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 234

 Score = 40.0 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 17/161 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    FN   + ++  R  W    A  +    D  +  VR    ++    
Sbjct: 86  QHDLNIGTVVRTANAFNAAGVHIIG-RRRWNRRGAMVT----DRYL-HVRHHETVE---- 135

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-IIFGRERWGLTNEEIALSN 141
                 A TA        VL        +    F       ++FG+E  GL+ E  A S+
Sbjct: 136 ------AFTAWAAGEGLPVLGVDLFPESVPVETFDFPRACVLVFGQEGPGLSAEVRAASS 189

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKE 182
           A++S        S+N   A  + +   +     S E    +
Sbjct: 190 AVLSIAQYGSTRSINAGVAAGIAMHAWIRQHAASPESGASQ 230


>gi|325300674|ref|YP_004260591.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324320227|gb|ADY38118.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 251

 Score = 40.0 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 31/160 (19%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV---FSNLKE 79
           Q   N+G +AR    F +  +          + K   ++  A       RV   + NL E
Sbjct: 111 QDPGNVGTIARIADWFGIEHVFCSQGTADIYNPKTVQATMGAI-----ARVQFHYCNLPE 165

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
            I         +A  ++    +         +         + II G E  G++   IA 
Sbjct: 166 FIR--------SASAQDI--PLFGTFLNGKDIYGENLENHGI-IIMGNEGNGISTP-IAQ 213

Query: 140 SNAI-ISFPVNPLFP-------SLNISQAVLLMVWECMEN 171
                +  P    +P       SLN++ A  ++  E    
Sbjct: 214 CITHRLFIP---NYPQGRSTSESLNVAIATAIVCAEFRRR 250


>gi|51244088|ref|YP_063972.1| hypothetical protein DP0236 [Desulfotalea psychrophila LSv54]
 gi|50875125|emb|CAG34965.1| hypothetical protein DP0236 [Desulfotalea psychrophila LSv54]
          Length = 160

 Score = 40.0 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              + G E+ GL+ +     +++I  P    F SLN++ A  ++++
Sbjct: 110 AVYLLGNEQRGLSKKITDQCHSLIQLP--GEF-SLNVAVAGSIVMY 152


>gi|254283647|ref|ZP_04958615.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
           proteobacterium NOR51-B]
 gi|219679850|gb|EED36199.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
           proteobacterium NOR51-B]
          Length = 250

 Score = 40.0 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 15/144 (10%)

Query: 25  GENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIA 82
            +N+GM+ R+     +   L    PR G  S       A+A  +  +  +    L  A+ 
Sbjct: 114 PQNVGMIIRSAVASGIGGILY---PRKGVASLGPLVIKASAGTLFKAPIISCETLAPALR 170

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                         N   ++A   AA          +    + G E  G+++   +L+  
Sbjct: 171 QC----------LENGLDIVALDGAAPDSLFGDRPSRAAVYVLGGETHGVSDATRSLATR 220

Query: 143 IISFPVNPLFPSLNISQAVLLMVW 166
            +S P+     SLN++    L+ +
Sbjct: 221 SLSIPMAGGVESLNVAVTAALIGY 244


>gi|150024430|ref|YP_001295256.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149770971|emb|CAL42438.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 242

 Score = 40.0 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 25/173 (14%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   Q++NS  G ++ L D +   N+G + R    F + Q+          + K   ++ 
Sbjct: 88  PQEKQIENS--GLIVALDDIRDPGNLGTIIRLCDWFGIAQIVCSEQTVDVYNPKVVQATM 145

Query: 63  NADCVIDSVRV-FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
            +   I  V + + +L+  +A+    ++ T    ++ +K+ L P               +
Sbjct: 146 GS---ITRVNITYLDLETYLAEAKTAVFGTFMDGKDIYKTQLPP---------------S 187

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECME 170
             I+ G E  G++          I+ P         SLN++ A  +++ E   
Sbjct: 188 GIIVLGNEANGISKIIEEKVTQKITIPRFGDLQRTESLNVATATAIVLSEFKR 240


>gi|325916659|ref|ZP_08178919.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537102|gb|EGD08838.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 235

 Score = 40.0 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 55/176 (31%), Gaps = 23/176 (13%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           P    L    +GPV+ L    V      N G + R+  +F +  L L       P+    
Sbjct: 70  PLQEWLAALPQGPVLALWLDGVG--NPHNFGAILRSSAHFGVAGLLL-------PAGSTL 120

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFI---YATTARNRNNFKSVLAPKEAAIVLNERI 115
             S  A       RV     EA+  +       A T   +  F       E    +    
Sbjct: 121 GLSGAA------ARVAEGGAEAVPLVQLPEAPLAMTQLRQTGFAVAATLVEGGQDVFAAA 174

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              Q +  + G E  G+  +     +  +S   + L  SLN++ A  +        
Sbjct: 175 LP-QRLVYVMGAESEGMDRQFARDCDLQLSIRGSGLVESLNVASATAVFQAAWRAR 229


>gi|227823292|ref|YP_002827264.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
 gi|227342293|gb|ACP26511.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
          Length = 276

 Score = 40.0 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 12/144 (8%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F +  + +          K+   S  +   +   R      E I  LH 
Sbjct: 140 NMGSLFRNAAAFGVDAVLMDAASCDPMYRKSIRVSVGSVLTLPFARQ-GTAAELIERLHA 198

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                          L+P+         I   Q V ++ G E  GL    ++ +      
Sbjct: 199 A--------GFAIWGLSPR--GETEVTEIPPAQRVALLVGTEGEGLPQAVLS-AVRTARI 247

Query: 147 PVNPLFPSLNISQAVLLMVWECME 170
              P   SLN++ A  + + E   
Sbjct: 248 RQRPGLDSLNVAMAAGIALHEVAR 271


>gi|125718589|ref|YP_001035722.1| SpoU rRNA methylase family protein [Streptococcus sanguinis SK36]
 gi|125498506|gb|ABN45172.1| SpoU rRNA Methylase family protein, putative [Streptococcus
           sanguinis SK36]
 gi|324995033|gb|EGC26946.1| SpoU rRNA methylase [Streptococcus sanguinis SK678]
          Length = 246

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 23/47 (48%)

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++ G E  G++ E    ++ ++   +     SLN++ A  ++++  
Sbjct: 199 ALVMGNEGQGISPEMTEAADVLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|298372920|ref|ZP_06982910.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275824|gb|EFI17375.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 253

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 43/168 (25%)

Query: 23  QLGENIGMVARAMWNFNLTQLR-------LVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           Q   N+G +AR    + +  +        + NP+          ++  A   + +V V  
Sbjct: 112 QDTGNLGTIARIADWYGIGHIVCSHGTVDVYNPKC-------VQATMGA---LANVSVCY 161

Query: 76  N-----LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
                 L EA  + +  +Y T     N +   L+                +  I+ G E 
Sbjct: 162 TNLFQFLSEA-QECNIPVYGTFLTGDNIYHRSLS---------------NSGIILLGNEG 205

Query: 130 WGLTNEEIALSNAIISFP---VNPLFP-SLNISQAVLLMVWECMENSI 173
            G+++    L    I+ P    +     SLN++ A  ++  E     I
Sbjct: 206 QGISDSIAGLVTDRITIPHFSASQHRSESLNVAIATAVVCSEFRRRDI 253


>gi|219126900|ref|XP_002183685.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404922|gb|EEC44867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 489

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
             + I+FG E  G + E +  ++  +  P+     SLN+S A  L+
Sbjct: 262 NQLAIVFGTEAVGCSQEMLRHADLRVYLPLRGFADSLNLSVATALV 307


>gi|189465794|ref|ZP_03014579.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
           17393]
 gi|189434058|gb|EDV03043.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
           17393]
          Length = 253

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 35/162 (21%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF----SNL 77
           Q   N+G + R    F +      +P      + K   ++      I  V++      +L
Sbjct: 112 QDPGNLGTIIRLADWFGIEH-IFCSPNTVDVYNPKTVQATMGG---IARVKLHYTPLPDL 167

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            +++ D+  +Y T     N +              +++ S     I+ G E  G+  E  
Sbjct: 168 IQSLKDIP-VYGTFLDGENMY-------------TQKLSSNGL--IVMGNEGKGIGKEVE 211

Query: 138 ALSNAIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
            L N  +  P    +P       SLN++ A  ++  E    +
Sbjct: 212 QLINRKLYIP---NYPAERETSESLNVAIATAVVCAEFRRQA 250


>gi|328708118|ref|XP_003243604.1| PREDICTED: hypothetical protein LOC100571270 [Acyrthosiphon pisum]
          Length = 1388

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 25/153 (16%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD---CVIDSVRVFSNLKE---- 79
            N+G +AR    F  + L  V+       ++  + S  A+    +I+      NLK     
Sbjct: 1246 NLGGLARTCQVFGASTLV-VDNLSCVEKKEFTALSMTAEKHQSIIE--VRLKNLKSYLQK 1302

Query: 80   -AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
              I     + A    +      +  P                  ++ G E  G+ ++ ++
Sbjct: 1303 KKIEGYQIVAAEQTVDSVKLHEMNLPF--------------KCVLLLGNETSGIPHDLLS 1348

Query: 139  LSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
              +  +      +  SLN+  A  L +WE  + 
Sbjct: 1349 TMDICVEIKQLGIVRSLNVHVAGSLFIWEYTKQ 1381


>gi|158313567|ref|YP_001506075.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
 gi|158108972|gb|ABW11169.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
          Length = 310

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                 +FG E  GLT    A ++A +  PV     SLN++ A  L ++      
Sbjct: 240 AGPTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASARAQ 294


>gi|284992366|ref|YP_003410920.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284065611|gb|ADB76549.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 213

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 15/149 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   NIG V R    F   ++ +V  R  W    A  +          VR   ++   + 
Sbjct: 73  RHDLNIGTVVRTANAFLAAEVHIVG-RRRWNRRGAMVT-----DRYQHVRHHPDVAALV- 125

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                  T AR+       +     A  L       +   ++FG+E  GL+ E    ++ 
Sbjct: 126 -------TWARSDGLPLLAVDNLPGARPLETEPLP-RACVLLFGQEGTGLSAEARDAADG 177

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++S        S+N   A  + +   +  
Sbjct: 178 VLSIAQFGSTRSVNAGVAAGIAMHAWVRQ 206


>gi|325287947|ref|YP_004263737.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324323401|gb|ADY30866.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 152

 Score = 40.0 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           E     +    + G E  GL+ E I  S+ ++ F       SLN++ A  ++++
Sbjct: 93  ETFEHPRRCVYLLGAEDHGLSKEAIEESHFLVKFKST---LSLNVAVAGSIVLY 143


>gi|322385982|ref|ZP_08059622.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
 gi|321269965|gb|EFX52885.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
          Length = 286

 Score = 40.0 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 29/56 (51%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +++   ++  ++ G E  G++ E   +++ ++   +     SLN++ A  ++++  
Sbjct: 230 QKVEKHEDFLLVMGNEGQGISQEMTEVADVLVHISMKGQAESLNVAVAAGILMFAL 285


>gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 245

 Score = 40.0 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           ++ ++ G E  G++ E  AL++ +I   +     SLN++ A  ++
Sbjct: 196 SLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGIL 240


>gi|168700455|ref|ZP_02732732.1| tRNA/rRNA methyltransferase (SpoU) [Gemmata obscuriglobus UQM 2246]
          Length = 104

 Score = 40.0 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA 160
           V  P E A+ L +     +    + G E +GL+ + +   + ++     P    LN++ A
Sbjct: 35  VEFPHEKAVSLPKFTHP-ERCVYLLGAEDYGLSKQALERCHRVVY---APSQRCLNVAVA 90

Query: 161 VLLM 164
             L+
Sbjct: 91  GSLI 94


>gi|326563875|gb|EGE14126.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
 gi|326566546|gb|EGE16692.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
 gi|326571607|gb|EGE21622.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
          Length = 258

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
            +  G  +IL   Q   NIG + R      +    + +P      S K   +   A    
Sbjct: 107 PTIGGDCLILDGLQDLGNIGTLLRTASAVGIQT-VITSPNTAHLWSPKCLRAGMGAHF-- 163

Query: 69  DSVRVFSNL--KEAIADLHF-IYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            S+ ++ ++   E +  L   +YAT++  N+  +   L                  +  +
Sbjct: 164 -SMSIYEHIAVDEILQKLKTPLYATSSHTNKVIYDHDLT---------------GPIAWV 207

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+ +E +  +   I+ P      SLN+  A  +  +E +   
Sbjct: 208 LGHEGQGVRDEFLNNA-IPIALPQPGGQESLNVGIAGSVCFYEMLRQR 254


>gi|294784974|ref|ZP_06750262.1| tRNA (guanine-N1)-methyltransferase [Fusobacterium sp. 3_1_27]
 gi|294486688|gb|EFG34050.1| tRNA (guanine-N1)-methyltransferase [Fusobacterium sp. 3_1_27]
          Length = 187

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 73  VFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V  ++++ I ++         I  T+AR  +N  S          L+++IF      ++ 
Sbjct: 87  VTESIEDVIKEIEKIEGQKPLIITTSARTFDNSISY-------KDLSKQIFEDDKPYLLL 139

Query: 126 GRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
               WGLT+E +A+S+ I+     N  +  L++  AV +++
Sbjct: 140 FGTGWGLTDEVMAMSDYILEPIRANSKYNHLSVRAAVAIIL 180


>gi|256845843|ref|ZP_05551301.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|256719402|gb|EEU32957.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
          Length = 187

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 73  VFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V  ++++ I ++         I  T+AR  +N  S          L+++IF      ++ 
Sbjct: 87  VTESIEDVIKEIEKIEGQKPLIITTSARTFDNSISY-------KDLSKQIFEDDKPYLLL 139

Query: 126 GRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
               WGLT+E +A+S+ I+     N  +  L++  AV +++
Sbjct: 140 FGTGWGLTDEVMAMSDYILEPIRANSKYNHLSVRAAVAIIL 180


>gi|149196494|ref|ZP_01873548.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
           HTCC2155]
 gi|149140174|gb|EDM28573.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
           HTCC2155]
          Length = 166

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
               ++ G ER GL+ + +   +  +  PV  L  S N++ A  L V+E        
Sbjct: 110 HKCVLVVGAEREGLSQDCLDCLDYTVEIPVWGLPYSYNVASATSLAVYEYCRQYPEG 166


>gi|330840305|ref|XP_003292158.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum]
 gi|325077613|gb|EGC31314.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum]
          Length = 310

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 35/72 (48%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
           I + + + ++FG E  G++ E  +L++     P+  +  S N+S +V + +       ++
Sbjct: 204 IKNNEKIALVFGNETVGVSEEMKSLADRRFYLPMIGMVQSFNVSVSVAMTLAYLKMQGVL 263

Query: 175 SSEKNVKEQNTP 186
             + +  ++N  
Sbjct: 264 VGDLSTLQKNQL 275


>gi|187924418|ref|YP_001896060.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
 gi|187715612|gb|ACD16836.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
          Length = 275

 Score = 39.7 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 17/171 (9%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
            L ++     ++L   Q   N+G + R+     + Q     P   +  S K   S   A 
Sbjct: 120 PLPDTVAQTCLVLDGVQDAGNVGSILRSAAAAGIQQ-VFCAPGTAYAWSSKVLRSGMGAH 178

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
            ++   ++  +  EA A +                ++                  +  +F
Sbjct: 179 FLL---QIHED-AEAQALI----------ERLAVPIVITDSHGAEAIYDCDLSGPLAWVF 224

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE-CMENSIVS 175
           G E  G++       +  ++ P      SLN++ A  + V+E C +    S
Sbjct: 225 GNEGAGVSQIWRDKVSLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQRGRS 275


>gi|332306692|ref|YP_004434543.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174021|gb|AEE23275.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 179

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 46/177 (25%)

Query: 2   TPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           TP      + +    II  +P+  +N+G + RA       +                   
Sbjct: 9   TPDISSPSDDSVTLCII--NPKSPQNMGSILRAA---GCYR------------------- 44

Query: 62  ANADCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNE-- 113
             AD V+         R F+       ++         +    +  +A    A+ L E  
Sbjct: 45  --ADSVLYTGERYARARAFNT---DTKNVGLNIPLAQIDEPMPEPHMA--MVAVELVEGA 97

Query: 114 ----RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                    ++   +FG E   +    +     ++  P       +N++  V ++++
Sbjct: 98  TPLPHFEHPKHAYYVFGPEDGSIEQSILDKCQHVVYVPTTGC---MNLAATVNVLLY 151


>gi|152992314|ref|YP_001358035.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424175|dbj|BAF71678.1| RNA methyltransferase, TrmA family [Sulfurovum sp. NBC37-1]
          Length = 263

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDG--WPSEKARSSSANADCVIDSVRV 73
           +I L      +N+GM+ R+    N+  + L  P  G    S     +S      +  + +
Sbjct: 123 IIALDGVTNPQNLGMIIRSCAAGNIDAILL--PTKGAAQISPLVIKASVG---TLFKMSI 177

Query: 74  FSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
                LKE +             R    S+      A    +     +    + G E  G
Sbjct: 178 IKTSNLKETLKHF----------RKEGASLYTLSSHADKSYKEQIYSEKTIFVLGNESEG 227

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           ++     L NA I+ P+     SLN++    L+ +
Sbjct: 228 VSPAVEKLCNASIAIPMQRGVESLNVAVTASLLAF 262


>gi|260494376|ref|ZP_05814507.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260198522|gb|EEW96038.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 187

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 73  VFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V  ++++ + ++         I  T+AR  NN  S          L+++IF      ++ 
Sbjct: 87  VVESIEDVVKEIEKIEGQKPLIITTSARTFNNSISY-------KDLSKQIFEDDKPYLLL 139

Query: 126 GRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
               WGLT+E +++S+ I+     N  +  L++  AV +++
Sbjct: 140 FGTGWGLTDEVMSMSDYILEPIRANSKYNHLSVRAAVAIIL 180


>gi|167517941|ref|XP_001743311.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778410|gb|EDQ92025.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1541

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 25   GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI--DSVRVFSNLKEAIA 82
              N+G + R    FN  +L + + R    S++ +  S +++  +  D V+    L E + 
Sbjct: 1396 PYNLGGLTRTCEIFNADRLVMPDNR-VLQSKEYKGVSVSSERWMHFDIVKPEDELVEYL- 1453

Query: 83   DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEEIALSN 141
                      R R    +++  ++ A  +  + ++  +   ++ G ER G++ + +A+ +
Sbjct: 1454 ---------VRKRREGYTIVGLEQTAESVPLQEYTFPERTVLVLGEERRGISPKVLAVID 1504

Query: 142  AIISFPVNPLFPSLN--ISQAVLLMVW 166
              +  P   +  SLN  +S A+ +  +
Sbjct: 1505 RCVEIPQFGVTRSLNVHVSAAIAIYAY 1531


>gi|163791737|ref|ZP_02186126.1| rRNA methylase [Carnobacterium sp. AT7]
 gi|159872997|gb|EDP67112.1| rRNA methylase [Carnobacterium sp. AT7]
          Length = 84

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I      G++ G E  G++ E +  +   +  P+     SLN++ A  ++++   + 
Sbjct: 27  IEPQSIYGLVMGNEGNGMSAELLKRTTKNLYIPIVGQAESLNVAVAAGVVMFSLTKA 83


>gi|260772959|ref|ZP_05881875.1| rRNA methylase [Vibrio metschnikovii CIP 69.14]
 gi|260612098|gb|EEX37301.1| rRNA methylase [Vibrio metschnikovii CIP 69.14]
          Length = 178

 Score = 39.7 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 30/163 (18%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA------N 63
           N+    +I L +P+   N+G V RA   +    +R    R     ++A           N
Sbjct: 2   NNETSVIIGLCNPKSPTNVGGVLRAAGCYQADAIRYTGTR----YDRAVKLQTDTKNRQN 57

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           +  ++    +  NL  A   +    A                E A  L E +   Q +  
Sbjct: 58  SIPLMAVTEITDNLPSATKIVCVELA----------------EGATPLPEFVHPPQAL-Y 100

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           +FG E   +    I  ++ ++  P       +N++ +V ++++
Sbjct: 101 VFGPEDGSIPQAIINQADEVVYVPT---VGCMNLAASVNVLLY 140


>gi|332970580|gb|EGK09567.1| tRNA/rRNA methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 278

 Score = 39.7 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 21/169 (12%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
            L++      +IL D Q   N+G + R      +  +          S K   +   A  
Sbjct: 124 TLKSPITTDCLILNDVQDNGNVGTLLRTAAAVGIKNIICTKGSAQAWSPKTMRAGMGAQF 183

Query: 67  VIDSVRVFSNLK--EAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +    ++  ++  E ++ L   +YAT++                  +  +    + V  
Sbjct: 184 GL---TIYEGIEADEVLSYLRLPVYATSS--------------HTDNIIYKQNLNRPVAW 226

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + G E  G+    +  +   ++ P      SLN++ A  L ++E +   
Sbjct: 227 VMGHEGQGVCEAIMKEA-TPVALPQPNGQESLNVAIAGALCMYETLRQR 274


>gi|289551058|ref|YP_003471962.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
           HKU09-01]
          Length = 246

 Score = 39.7 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 24/54 (44%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +   +   ++ G E  G+ N  +  +   +  P+     SLN++ A  ++++  
Sbjct: 191 LEPQETFALLLGNEGDGVNNALLEHTTKNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 255

 Score = 39.7 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            +        I G E  G+  + + L++  +  P+     SLN++ A  ++++
Sbjct: 199 ELSKKGTAAFILGNEGQGVHPDILGLTDQNVYIPIYGQAESLNVAIAAGILMY 251


>gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 255

 Score = 39.7 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 31/158 (19%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD--------CVIDSVRVF 74
           Q   NIG + R       + +            K   +   +          +I+  + F
Sbjct: 119 QDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAMQGSQFHLKLCSGNLIEWAKEF 178

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN--ERIFSGQNVGIIFGRERWGL 132
                                   K  +   E        +++    +  ++ G E  G+
Sbjct: 179 ---------------------KQRKLPVFGSELNDQARSYDQVGRHSDFALVMGNEGNGM 217

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + + +  ++  +  P+     SLN++ A  ++++  ME
Sbjct: 218 SEKLLKETSLNLYIPIKGHAESLNVAVAAGILMFGLME 255


>gi|170782313|ref|YP_001710646.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156882|emb|CAQ02050.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 284

 Score = 39.7 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA------DCVIDSVRVFSNLKE 79
           N+G + RA+         L+ PR   P   ++   S           + +       L E
Sbjct: 147 NVGAIFRAVAGIG-ADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHE 205

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIA 138
           A    H                LA ++ A+ L+       + + ++ G E  GL+   + 
Sbjct: 206 A--GFHLAA-------------LALEDDAVTLDAFAADAPERIALVLGTEGDGLSRHALR 250

Query: 139 LSNAIISFPVNPLFPSLNISQ 159
            +++ +  P+     SLN++ 
Sbjct: 251 HADSTVVIPMLHGVDSLNVAA 271


>gi|145350311|ref|XP_001419555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579787|gb|ABO97848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 311

 Score = 39.7 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLMVW 166
           E     +N   I G E  GL    +      I+ P      PS N++    ++++
Sbjct: 220 ENFEHPRNAVYILGSEDTGLNTTMLRACQHHIALPTTGTRSPSFNVAVTGAIIMY 274


>gi|15828649|ref|NP_326009.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089591|emb|CAC13351.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 229

 Score = 39.7 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 16/155 (10%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNP--RDGWPSEKARSSSANADCVIDS 70
           K  ++IL   +   N G + R+   F +    ++ P  R    +      S+       +
Sbjct: 81  KETILILDHLEDPYNFGAILRSANAFGIKN--IIYPIKRAVDINSTVLKVSSGGFV---N 135

Query: 71  VRVFSNLKEAIADLHFIYATTAR-NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
           +R + +        + I AT  +  +  +    +  +       +I       ++ G E+
Sbjct: 136 LRFYKS--------NSISATIDKLKKQGYWIYSSSLDPTSEDINKISFNNPSVLVIGNEK 187

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
            G++      S+ +          SLN S A  ++
Sbjct: 188 KGISQTTKKQSDQLFYIKTKGSVQSLNASVAAGII 222


>gi|313665349|ref|YP_004047220.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
 gi|312949359|gb|ADR23955.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
          Length = 255

 Score = 39.7 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R+  +FN     + +P       +    S     +     V   L + I 
Sbjct: 115 QDPGNLGTLIRSAASFNFKT-VIASPNSVNFHNQKVLRSTQG-NLFQVNLVNEYLVKVIN 172

Query: 83  DLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            LH     I  T+    ++ K +            +  S     +I G E  G++ E + 
Sbjct: 173 QLHDNNYIIIGTS--LHDDSKPL---------SKVKFDSDDKYALIIGNEGKGISPELLD 221

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           L +  I+  +     S+N + A  +++++ 
Sbjct: 222 LIDLNINIEMAENVDSINAAVAGSIIMYQI 251


>gi|254443559|ref|ZP_05057035.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198257867|gb|EDY82175.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 258

 Score = 39.7 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 16/148 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N G + RA   F L  +          + K   ++      +        L  A+++L
Sbjct: 119 PGNCGSMVRAADWFGLDGVVFGKGCAELENGKTSRATMGGLFYLPVAVGVD-LAAAVSEL 177

Query: 85  HFI---YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                   TT              E+A+ L +  F  +   ++ G E  G++     L++
Sbjct: 178 RRSGVQVFTT-----------ELDESAVSLRDFEFP-ERCALVIGNEARGVSAAISELAD 225

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECM 169
             +         SLN + A  + + +  
Sbjct: 226 GKLFVERFGSGESLNAAVAAAVFLGKWR 253


>gi|301630620|ref|XP_002944414.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like
           [Xenopus (Silurana) tropicalis]
          Length = 278

 Score = 39.7 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 53/186 (28%), Gaps = 23/186 (12%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSA 62
            AP LQ       ++L   Q   N+G + R+   F   Q L L      W S K   +  
Sbjct: 113 AAPALQPGVA--TVVLDRLQDAGNVGSILRSASAFGFAQVLALKGCAALW-SPKVLRAGM 169

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +            I          A+ R     +LA          R        
Sbjct: 170 GAHFALR----------LIEGGGL-----AQIRALGLPLLATSSHQGDYLHRAALPWPCA 214

Query: 123 IIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
            + G E  G+     AL+   I    P      SLN++ A  + +       I      +
Sbjct: 215 WVLGHEGQGVAPALEALAAQRIRIAQPGGEE--SLNVAAAAAICLHASGTARIDDPGFFI 272

Query: 181 KEQNTP 186
            E    
Sbjct: 273 VESPDA 278


>gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
           MPA1U2]
 gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
           MPA1U2]
          Length = 255

 Score = 39.7 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 16/148 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR--VFSNLKEA 80
           Q   NIG + R      +  + L        + K   S+  +   I  V+  +    ++ 
Sbjct: 118 QDPGNIGTMIRTASASGIDAVILGKGCADPYNPKTVRSAQGSHFQISIVKGELMEWTEQT 177

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
            A    I+ T  +N         P   A  L       +   +I G E  G+    +  +
Sbjct: 178 KASGIPIFGTALQNS-------TPVHEAKTL-------EQFALIVGNEGSGVDPVLLQQT 223

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +  +  P+     SLN++ A  ++++  
Sbjct: 224 DQNLMVPLYGNAESLNVAVATGILLYSL 251


>gi|213618929|ref|ZP_03372755.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 54

 Score = 39.7 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I  P+ P   S+N+S AV ++V+E    
Sbjct: 17  IRIPMMPDSRSMNLSNAVSVVVYEAWRQ 44


>gi|215429080|ref|ZP_03426999.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
          Length = 298

 Score = 39.7 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 17/157 (10%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           +     ++ L +     N+G + R++  F    + +   R    +  A  +SA A   I 
Sbjct: 156 DQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIP 215

Query: 70  SVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
             R   +   LK        +    A                    + +    ++ ++ G
Sbjct: 216 VARATNLTRTLKGWADRGVRVIGLDAGGGT--------------ALDDVDGTDSLVVVVG 261

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL 163
            E  GL+       + ++  P+     SLN S A  +
Sbjct: 262 SEGKGLSRLVRQNCDEVVFIPMAAQAESLNASVAAGV 298


>gi|126662427|ref|ZP_01733426.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
 gi|126625806|gb|EAZ96495.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
          Length = 241

 Score = 39.7 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 26/173 (15%)

Query: 6   PQLQNSAK-GPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           P+ +N  + G ++ L D +   N+G + R    F +  L          + K   ++  +
Sbjct: 88  PKAKNFVESGLILALDDVRDPGNLGTIIRLCDWFGIETLFCSEESVDIYNPKVVQATMGS 147

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              ++   V+ +L+  +                   +         + +     + V I+
Sbjct: 148 ISRVN--VVYGSLEAFLTKTKL-------------PIFGTFMDGSNIYQEALPKEGV-IV 191

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFP------SLNISQAVLLMVWECMEN 171
            G E  G++     L +  I+ P    F       SLN++ A  +++ E   N
Sbjct: 192 MGNEANGISPSVEKLVSERIAIP---RFGNIQLTESLNVATATAIILSEFKRN 241


>gi|81428990|ref|YP_395990.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 253

 Score = 39.7 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 27/157 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--------DCVIDSVRVF 74
           Q   NIG + R         + L N      + K   S   +          +ID ++ F
Sbjct: 116 QDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPKLLRSMQGSHFHLPIYQGNLIDWMKKF 175

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           ++      D+  +Y T           L P+  +     +      + +I G E  G+  
Sbjct: 176 NS-----QDVP-VYGT----------ELNPEAISYQDVPKTAD---MALILGNEGNGVAK 216

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + +A +   +  P+     SLN++ A  +++++ +E 
Sbjct: 217 DVLAATTQNLYIPIPGNAESLNVAVAAGILMFKLIEG 253


>gi|72162085|ref|YP_289742.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
 gi|71915817|gb|AAZ55719.1| probable tRNA/rRNA methyltransferase [Thermobifida fusca YX]
          Length = 184

 Score = 39.7 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 10/134 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R    F +  L L          +   ++      +   +            
Sbjct: 35  PFNLGSILRTAATFGVDTLWLTGNAVTPEHRQVHKTALGTQTKVRWEKTA---------- 84

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAII 144
               A  A     ++ V        V   R     +V +  G E  G +   +A  +A+ 
Sbjct: 85  TSAEAVAAARAAGYRVVALELAHGAVPLHRAPLTGDVCLAVGAEDHGCSPALLAAVDAVT 144

Query: 145 SFPVNPLFPSLNIS 158
             P      SLN++
Sbjct: 145 YIPQTGRVGSLNVA 158


>gi|260772015|ref|ZP_05880932.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260612882|gb|EEX38084.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 39

 Score = 39.7 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           N  I  P+ P   SLN+S AV ++ +E       S  +
Sbjct: 2   NQRIRIPMMPNARSLNLSNAVAIIAFEAWRQLGFSGAQ 39


>gi|39995753|ref|NP_951704.1| hypothetical protein GSU0647 [Geobacter sulfurreducens PCA]
 gi|39982517|gb|AAR33977.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gi|298504763|gb|ADI83486.1| protein of unknown function DUF2168 [Geobacter sulfurreducens
           KN400]
          Length = 194

 Score = 39.7 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADC------VIDSVRVFSNLKE 79
           ++R+   F L    LV P +G      R          A         +D VR+ ++++E
Sbjct: 40  ISRSARTFGLNHYYLVTPVEGQKELAGRIIRHWREGWGASYNPKRKAALDLVRISNSIEE 99

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGLTNEE 136
            + +L   Y   AR          P+         I +        I+FG   WGLT + 
Sbjct: 100 VLEELGNEYGAPARLVTTGARQH-PRSIGYEQMASIMAHDREHPYLIVFGT-GWGLTEDF 157

Query: 137 IALSNAIIS-FPVNPLFPSLNISQAVLLM 164
              ++ +++       +  L++  A  ++
Sbjct: 158 FDRADFVLAPIQGPGEYNHLSVRSAAAII 186


>gi|317138163|ref|XP_001816718.2| hypothetical protein AOR_1_376184 [Aspergillus oryzae RIB40]
          Length = 351

 Score = 39.7 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 39/168 (23%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+ +   +  +          S     +SA A    +++     L E   ++
Sbjct: 175 PGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAA---ENM----TLLEVSNEV 227

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLN----------------ERIFSGQNVGIIFGRE 128
            FI     R++ N     A                         E + +     I+ G E
Sbjct: 228 DFI----QRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSE 283

Query: 129 RWGLTNEEIALSNAIISFP-----------VNP-LFPSLNISQAVLLM 164
             GL+    + +++I+S P            +P    SLN+S A  L+
Sbjct: 284 GSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALL 331


>gi|145485115|ref|XP_001428566.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395653|emb|CAK61168.1| unnamed protein product [Paramecium tetraurelia]
          Length = 231

 Score = 39.7 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSE 177
            N     G E  GL  E  AL +  +  P       SLN+  A  ++     + +  + +
Sbjct: 107 GNTVFFLGNEGTGLIPEHKALCDHFVYIPQYTQKTASLNVGVASGIIFHHFAQWAGFTEQ 166

Query: 178 KNVKEQ 183
           +   E+
Sbjct: 167 QVEGEK 172


>gi|84624847|ref|YP_452219.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368787|dbj|BAE69945.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 303

 Score = 39.7 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 29/182 (15%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKA 57
           P    L    +GPV+ L    V      N G + R+  +F +  L L      G     A
Sbjct: 141 PLQEWLAALPQGPVLALWLDGVG--NPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAA 198

Query: 58  RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           R +   A+ V      D+    + L++A     F  A T  +             A  L 
Sbjct: 199 RVAEGGAEAVPLVQLPDTATAMAQLRQA----GFAIAATLVDGGQ-------DVFAAALP 247

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +R+        + G E  G+        +  +S   +    SLN++ A  +         
Sbjct: 248 QRL------VYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHARV 301

Query: 173 IV 174
           + 
Sbjct: 302 LA 303


>gi|59711260|ref|YP_204036.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|59479361|gb|AAW85148.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
          Length = 169

 Score = 39.7 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 30/160 (18%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS-----ANADCV 67
               I L +P+   N+G V RA   + +  +R      G   ++A           +   
Sbjct: 4   THVTIGLSNPKSPTNVGAVMRAAGCYQVDDVR----YTGERYDRAAKFQTDTKKVASKIP 59

Query: 68  IDSV-RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           + SV  +  +L E                 + K V        V   +         +FG
Sbjct: 60  LTSVNCLLDDLPE-----------------DMKVVCVELAEGAVSLPQFQHPDKAIYVFG 102

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E   +T +    ++ ++  P       +N++  V ++++
Sbjct: 103 PEDGSITQQVADRADHVVYVPT---VGCMNLAATVNVLLY 139


>gi|328946840|gb|EGG40977.1| SpoU rRNA methylase [Streptococcus sanguinis SK1087]
          Length = 269

 Score = 39.7 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 28/55 (50%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            + S ++  ++ G E  G++ E  A ++ ++   +     SLN++ A  ++++  
Sbjct: 214 EVDSKESFVLVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHL 268


>gi|315501742|ref|YP_004080629.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315408361|gb|ADU06478.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 207

 Score = 39.7 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 17/156 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    F   ++ +V  R  W    A  +          VR    ++E + 
Sbjct: 67  QHDFNIGTVVRNANAFLAAEVHIVG-RRRWNRRGAMVT-----DRYQHVRHHPTIEEFV- 119

Query: 83  DLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    A  R+    V+           E     +   ++FG+E  GL+    +  +
Sbjct: 120 ---------AWARDERLPVVGIDNLPGSRPMETAVLPRRCVLLFGQEGPGLSAVARSACD 170

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           A+ S        S+N   A  + +   + +      
Sbjct: 171 ALFSIAQYGSTRSINAGVASGIAMHAWIRSYAGPPP 206


>gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
 gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
          Length = 245

 Score = 39.7 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 15/167 (8%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
            +  L  S  G  ++L D Q   N+G + R         + L +      ++K   S   
Sbjct: 92  ESQSLPESLSGKYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQG 151

Query: 64  ADCVID--SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           +   +      +F    E I             +  F  +        V    + +  N 
Sbjct: 152 SHFHLPIYRGPIF----EMIETCQ---------KQGFPILATTLSTVSVDYRAVKTDDNF 198

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++ G E  G++ +    +N ++   +     SLN++ A  ++++  
Sbjct: 199 ALVMGNEGQGISQDMAESANQLVHINMPGRAESLNVAVAAGILMFSL 245


>gi|255070677|ref|XP_002507420.1| RNA methyltransferase [Micromonas sp. RCC299]
 gi|226522695|gb|ACO68678.1| RNA methyltransferase [Micromonas sp. RCC299]
          Length = 2006

 Score = 39.7 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 20/166 (12%)

Query: 8    LQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            L     G V++  LVD ++  N+  +AR         L + +           + S  A+
Sbjct: 1850 LPERPPGLVVVASLVD-KIP-NLAGLARTCEVLGAEALVIADAARTVSHRDFTAVSVTAE 1907

Query: 66   CVIDSVRVFSNLKEAIADL---HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
              +            I D+     +       R+ +  V   +    V        +   
Sbjct: 1908 RWLP-----------IRDVPVNGLVSYLLRLRRDGYALVGLEQTRGAVDVNEYRFPRKTA 1956

Query: 123  IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLN--ISQAVLLMVW 166
            ++ GRER G+  + + + +A +  P   +  SLN  +S +V +  +
Sbjct: 1957 LVLGREREGIDADVLNVLDACVVIPQKGMIRSLNVHVSASVAMAAY 2002


>gi|332532503|ref|ZP_08408381.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038146|gb|EGI74593.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 243

 Score = 39.7 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 20/158 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCV 67
             A G ++ L       N+G + R    + +    +V   D     + K  S++  +   
Sbjct: 97  PQANGLILALDGVSDPGNLGTIIRVADWYGIK--HIVTSTDSADAYNPKTISATMGSFVR 154

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   +V  +L + +  L+               V         +++  F+G  V ++ G 
Sbjct: 155 VSVSQV--DLPDYLQSLNL-------------PVYGAFLDGQSVHKTQFTGSGV-LLMGS 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E  G+      L    I+ P      SLN++ A  +++
Sbjct: 199 ESHGIRETCAKLVTNKITIPAFGGAESLNVAMATGIIL 236


>gi|241690481|ref|XP_002411769.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215504608|gb|EEC14102.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 227

 Score = 39.7 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 13/76 (17%)

Query: 123 IIFGRERWGLTNEEIALSNAI--------ISFPVNPLFPSLNISQAVLLMVWECMEN-SI 173
           ++ G E  GL+      ++ +        +  P +    SLN + A  ++++E      +
Sbjct: 156 LVVGGEAQGLST----QAHKLAVDCGGSRVHVPSDNEVESLNTAVAASIILFEMRRQIML 211

Query: 174 VSSEKNVKEQNTPATK 189
            +S      +   A+ 
Sbjct: 212 AASASQSSHKQADASA 227


>gi|288918245|ref|ZP_06412600.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
 gi|288350415|gb|EFC84637.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
          Length = 320

 Score = 39.7 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 13/104 (12%)

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
           D++ V   L+E       + AT+                   L            +FG E
Sbjct: 214 DALAVVRELREL--GCQ-VLATSG----------HADRDLDDLAAAGVLAGPTAWVFGNE 260

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             GLT    A ++  +  PV     SLN++ A  L ++      
Sbjct: 261 ARGLTAATAASADTAVRVPVYGQAESLNLAVASALCMYASARAQ 304


>gi|119472552|ref|ZP_01614600.1| RNA methyltransferase, TrmH family protein [Alteromonadales
           bacterium TW-7]
 gi|119444876|gb|EAW26176.1| RNA methyltransferase, TrmH family protein [Alteromonadales
           bacterium TW-7]
          Length = 243

 Score = 39.7 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 56/158 (35%), Gaps = 20/158 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCV 67
              KG ++ L       N+G + R    + +    +V   D     + K  S++  +   
Sbjct: 97  PKIKGLILALDGVSDPGNLGTIIRVADWYGIK--HIVTSTDSADAYNPKTISATMGSFVR 154

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
           +   +V  +L   +  L                +         +++  F+G+ V ++ G 
Sbjct: 155 VSVSQV--DLPAYLQTLKL-------------PIYGAFLDGQSVHKTQFNGEGV-LLMGS 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E  G+      L    I+ P      SLN++ A  +++
Sbjct: 199 ESHGIRQACAGLVTDKITIPAFGEAESLNVAMATGIIL 236


>gi|118376426|ref|XP_001021395.1| RNA methyltransferase, TrmH family protein [Tetrahymena
           thermophila]
 gi|89303162|gb|EAS01150.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
           SB210]
          Length = 252

 Score = 39.7 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 40/191 (20%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR-------------- 72
           N+G++ R+   FN  ++ L++  +   +E+          V+  V               
Sbjct: 31  NMGIIIRSASAFNFEKVFLISKNEDIFNEEVEGDERKRKRVLHRVVKEFQMFGNHGTQAQ 90

Query: 73  ----VFSNLKEA----IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
               VF NLKEA    + +   +        ++   V  P +             +   +
Sbjct: 91  MQFDVFKNLKEAKQYFVQNNIKVCGVEITP-DSKSVVTHPFQ------------GDTVFL 137

Query: 125 FGRERWGLTNEEIALSNAIISFP--VNPLFPSLNISQAVLLMVWE--CMENSIVSSEKNV 180
            G E  GL      + +  +  P   N    SLN+S A  ++            S     
Sbjct: 138 MGNEGAGLIEAHKKICDHFVYIPQYTNKT-ASLNVSCAASIIFHHFALWAGYQESQIFGE 196

Query: 181 KEQNTPATKGE 191
           K Q+  A +GE
Sbjct: 197 KFQDQAAIEGE 207


>gi|328865936|gb|EGG14322.1| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium
            fasciculatum]
          Length = 1689

 Score = 39.7 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 30/54 (55%)

Query: 123  IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            ++ G+E+ G+ ++ + L +  +  P   +  SLN+  +  +++WE  +  I+ S
Sbjct: 1622 LLLGQEQNGIPSDFLNLVDYCVEIPQFGIIRSLNVHVSGSIVLWEYSQQQILKS 1675


>gi|326569788|gb|EGE19838.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
          Length = 258

 Score = 39.7 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
            +  G  +IL   Q   NIG + R      +    + +P      S K   +   A    
Sbjct: 107 PTISGDCLILDGLQDLGNIGTLLRTASAVGIQT-VITSPNTAHLWSPKCLRAGMGAHF-- 163

Query: 69  DSVRVFSNLK--EAIADLHF-IYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            S+ ++ ++   E +  L   +YAT++  N+  +   L                  +  +
Sbjct: 164 -SMSIYEHIAVNEILQKLKTPLYATSSHTNKVIYDHDLT---------------GPIAWV 207

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+ +E +  +   I+ P      SLN+  A  +  +E +   
Sbjct: 208 LGHEGQGVRDEFLNNA-IPIALPQPGGQESLNVGIAGSVCFYEMLRQR 254


>gi|70606864|ref|YP_255734.1| CoA-transferase family III protein [Sulfolobus acidocaldarius DSM
           639]
 gi|68567512|gb|AAY80441.1| CoA-transferase family III [Sulfolobus acidocaldarius DSM 639]
          Length = 382

 Score = 39.7 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 150 PLFPSLNISQAVLL----MVWECMENSIVSSEKNVKEQNTPATKGELLSFLDYLEISLEE 205
           P+ P LN+++A  +    +V+E      V    NVK++  P T        ++    L+E
Sbjct: 300 PVAPILNLAEAFQIYGNKLVYERRSLRYVRFPANVKDKREPGTGLPAPRLGEHTIEVLKE 359

Query: 206 RGY 208
            GY
Sbjct: 360 IGY 362


>gi|188577836|ref|YP_001914765.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522288|gb|ACD60233.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 240

 Score = 39.3 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 29/182 (15%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKA 57
           P    L    +GPV+ L    V      N G + R+  +F +  L L      G     A
Sbjct: 78  PLQEWLAALPQGPVLALWLDGVG--NPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAA 135

Query: 58  RSSSANADCVI-----DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
           R +   A+ V      D+    + L++A     F  A T  +             A  L 
Sbjct: 136 RVAEGGAEAVPLVQLPDTATAMAQLRQA----GFAIAATLVDGGQ-------DVFAAALP 184

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +R+        + G E  G+        +  +S   +    SLN++ A  +         
Sbjct: 185 QRL------VYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHARV 238

Query: 173 IV 174
           + 
Sbjct: 239 LA 240


>gi|119499892|ref|XP_001266703.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
           NRRL 181]
 gi|119414868|gb|EAW24806.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
           NRRL 181]
          Length = 484

 Score = 39.3 bits (91), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 8   LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L   ++ PV++L+       N+G + R+ +   +  +          S     +SA A  
Sbjct: 293 LPGKSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAAE 352

Query: 67  VIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVG 122
            +  ++V      ++++ A+    +A  A           P     I L     +     
Sbjct: 353 NMPLIKVSNEVDFIQQSKANGWHFFAADA----PLPGSRYPDTTGDIDLTRNAVTQAPSV 408

Query: 123 IIFGRERWGLTNEEIALSNAIISFPV------------NPLFPSLNISQAVLLMVWECME 170
           I+ G E  GL+    + +++I+S P             +    SLN+S A  +++ + + 
Sbjct: 409 IMLGSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDSARVDSLNVSVAAAILMEQFLR 468

Query: 171 NSIVSSEKNVKEQ 183
             I+ +E   K+ 
Sbjct: 469 IPILITEAPPKKA 481


>gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773]
          Length = 257

 Score = 39.3 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 11/146 (7%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         + L        S K   +   +   ++   +  +L E   
Sbjct: 119 QDPGNVGTLVRTADAAGFKGVVLGEGTADAYSPKVVRAMQGSQFHLE--VLNGDLNE--- 173

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              +  A TA   N      +  + A     +I       +I G E  G++ E  A + A
Sbjct: 174 ---WTDALTA---NGLPVYGSQLDEAAQSYRQIEPSTQFALIVGNEGQGMSEELAAKTTA 227

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
            +  P+     SLN++ A  ++++  
Sbjct: 228 NLYIPIQGQAESLNVAIAGGILMFSL 253


>gi|74316633|ref|YP_314373.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
 gi|74056128|gb|AAZ96568.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
          Length = 260

 Score = 39.3 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 18/176 (10%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           +TP AP         V++L D Q   N+G + R       T   L        S KA   
Sbjct: 103 LTPQAP----VDLALVVVLEDIQDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRG 158

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
              A  V+  +++ ++    + D      T+         V    EAA  L    ++G  
Sbjct: 159 GQGAQFVLP-MQLAADPGSWLRDFS---GTS---------VALAPEAAHDLYTLDYTG-P 204

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
             ++ G E  GL+   +A +      P+     SLN S A+ + V+E +    V  
Sbjct: 205 TALVVGNEGAGLSAATLAAATTRARIPMPGRVESLNASAALAVAVFEALRQRGVRR 260


>gi|325117118|emb|CBZ52670.1| putative rRNA methylase [Neospora caninum Liverpool]
          Length = 545

 Score = 39.3 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNV 180
           + ++ G E+ G + E +   + I +        SL++S A  ++++   + +++   + V
Sbjct: 473 LAVVVGNEQKGSSREVLDACDGIAAI-AQVKGDSLSVSTAAAVVLYTLQQETLIKLREQV 531

Query: 181 K 181
            
Sbjct: 532 P 532


>gi|297156620|gb|ADI06332.1| ornithine carbamoyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 334

 Score = 39.3 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 22/92 (23%)

Query: 18  ILVDPQL----GENIGMV----ARAMWNFNLTQL----------RLVNPRDGWPSEKARS 59
           +L   +        IG      AR  +N   + L          R+V PR+ WP E    
Sbjct: 143 VLTMTEHSDKPPAEIGFAYLGDAR--YNMGNSYLITGALLGMDVRIVAPRELWPDEAVVE 200

Query: 60  SSAN-ADCVIDSVRVFSNLKEAIADLHFIYAT 90
            +   A      V +  ++ E +A   F+ AT
Sbjct: 201 RAHGLAKESGARVTLTEDIAEGVAGADFV-AT 231


>gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
          Length = 266

 Score = 39.3 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V +I G E  G++ + +  S+  I  P+     SLN+  A  +++ E 
Sbjct: 212 KVALILGNEGNGISADILNTSDYQIIIPIKEGMESLNVGVAAGILINEI 260


>gi|302653550|ref|XP_003018599.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
           0517]
 gi|291182256|gb|EFE37954.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
           0517]
          Length = 573

 Score = 39.3 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 14/179 (7%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFSNLKEAIA 82
             N+G + R+ + F    +   +      S     ++A A   I   SVR  S    A  
Sbjct: 389 PGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQ 448

Query: 83  DLHF-IYATTARNRNNFKSVLA--PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
              +  +A  A +           P   ++       +     ++ G E  GL  +    
Sbjct: 449 ANGWKFFAADAPDATLVNDYTRKIPVMNSLSSLSSELTKAPCVLMLGGEGSGLQQKIKNR 508

Query: 140 SNAIISFPVN---------PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           +++ ++ P               SLN+S A  L+    +    +SS    ++     T+
Sbjct: 509 ADSFVTIPGAYSDNIRDDTAGVSSLNVSVASALLCEAFLSRRPLSSSGETQDSADTPTE 567


>gi|289676543|ref|ZP_06497433.1| hypothetical protein PsyrpsF_24909 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 85

 Score = 39.3 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSE 177
               IFG E   L  E       ++  P       +N++  V +++++ M   I   S  
Sbjct: 16  RALYIFGPEDGSLDQEIRDWCEDVVYIPTEGC---MNLAATVNVVLYDRMAKGINTRSGP 72

Query: 178 KNVKEQNTPATK 189
           +  +E+  PA+ 
Sbjct: 73  QFGREKIDPASD 84


>gi|237653192|ref|YP_002889506.1| helicase c2 [Thauera sp. MZ1T]
 gi|237624439|gb|ACR01129.1| helicase c2 [Thauera sp. MZ1T]
          Length = 653

 Score = 39.3 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 30  MVARAMWNF---------NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA 80
             AR                  LRLV     +  E AR S+A A    +   +   L++A
Sbjct: 263 AAARDCVAMIDQTRNLEKAARDLRLV-----FGPESARLSAAQAGEHENFDVMVEALEKA 317

Query: 81  IADLHFIYATTA-RNRNNFKSVLAPKEAAIVLN 112
           +AD H + AT A R+      +   +E +  L 
Sbjct: 318 LADFHAVLATQAERSEGLGNCLRRTEEMSERLA 350


>gi|313890877|ref|ZP_07824501.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120775|gb|EFR43890.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 255

 Score = 39.3 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 23/167 (13%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P L +  KG  ++L D Q   N+G + R         + L        ++K   S   
Sbjct: 101 EKPDLPSIGKGKYLLLEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADVFNQKTLRSMQG 160

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG- 122
           +   I    V+        D   +YA     +     +L     A  L+++    + VG 
Sbjct: 161 SHYHIP---VWRT------D---VYAFCRTMKTKEMPIL-----ATTLSDQSIDYKQVGT 203

Query: 123 -----IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
                ++ G E  G++ +   LS+ ++   +     SLN++ A  ++
Sbjct: 204 LTDFILVMGNEGQGISPKMAELSSQLVHISMPGQAESLNVAVAAGIL 250


>gi|224014732|ref|XP_002297028.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 542

 Score = 39.3 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 66/164 (40%), Gaps = 21/164 (12%)

Query: 21  DPQLGENIGMVARAMWNFNLTQL-RLVNP-----RDGWPSEKARSSSANADCVIDSVRVF 74
           +P    N+    R + +F +  +  +++      +     ++   ++  + C + ++R F
Sbjct: 311 NPSNPSNVWACLRTLDSFGIQYVDVIIHSDSYQGKAAVNQKRGMRTAMGSACWM-TLRQF 369

Query: 75  SNLKEAI------ADLHFIYAT-----TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
            +++ AI       D   IYA+     +   R+    V          +++    + + I
Sbjct: 370 GSIEAAITSLREEEDC-LIYASDLNPASMDVRDLNWDV-DYSSGGNADSDQQKEQRPICI 427

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLL-MVW 166
           + G E  G++++   L++     P+     S N+S A  + + +
Sbjct: 428 VMGNEERGISDKMRELADETFYLPMCGFAESFNLSVATAITLAY 471


>gi|86145019|ref|ZP_01063351.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218677041|ref|YP_002395860.1| rRNA methyltransferase [Vibrio splendidus LGP32]
 gi|85837918|gb|EAQ56030.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218325309|emb|CAV27330.1| rRNA methyltransferase [Vibrio splendidus LGP32]
          Length = 170

 Score = 39.3 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 30/162 (18%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDS 70
           +     I L +P+   N+G V RA                    E   +          +
Sbjct: 2   NKSHVTIGLTNPKSPTNVGAVMRAAG-------------CYQVDEVKYT----GQRYDKA 44

Query: 71  VRVFSNLKEAIADLHFIYATTARNR------NNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            +  ++ K A          T          +  K V            R    +N   I
Sbjct: 45  AKFHTDTKSA----TRTIPLTGVESFLDNLNSETKIVCVELAEGATPLPRFKHPENAIYI 100

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           FG E   ++ +    ++ ++  P       +N++  V ++++
Sbjct: 101 FGPEDGSISQDVADRADHVVYVPT---VGCMNLAATVNVLLY 139


>gi|331269142|ref|YP_004395634.1| rRNA methylase [Clostridium botulinum BKT015925]
 gi|329125692|gb|AEB75637.1| rRNA methylase [Clostridium botulinum BKT015925]
          Length = 260

 Score = 39.3 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I  G E  G+++    L +  +  P+     SLN   A  +M++E +  +
Sbjct: 209 ICVGNEGNGVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVRQT 258


>gi|293977966|ref|YP_003543396.1| rRNA methylase [Candidatus Sulcia muelleri DMIN]
 gi|292667897|gb|ADE35532.1| rRNA methylase, putative, group 3 [Candidatus Sulcia muelleri DMIN]
          Length = 239

 Score = 39.3 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSI 173
                I G E  G++   +++ N  +  P +     SLN+S A   +++E +   +
Sbjct: 181 NPTAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQRL 236


>gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873]
 gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873]
          Length = 260

 Score = 39.3 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           I  G E  G+++    L +  +  P+     SLN   A  +M++E +  +
Sbjct: 209 ICVGNEGNGVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVRQT 258


>gi|94502287|ref|ZP_01308767.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833855|ref|YP_001598051.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           GWSS]
 gi|94451153|gb|EAT14098.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206345|gb|ABS30655.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           GWSS]
          Length = 239

 Score = 39.3 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSI 173
                I G E  G++   +++ N  +  P +     SLN+S A   +++E +   +
Sbjct: 181 NPTAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQRL 236


>gi|29027480|gb|AAO61955.1| rRNA methylase [Aster yellows phytoplasma]
          Length = 78

 Score = 39.3 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLLMVWECMENSI 173
                I G E  G++   +++ N  +  P +     SLN+S A   +++E +   +
Sbjct: 21  NPTAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQRL 76


>gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 343

 Score = 39.3 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 17/178 (9%)

Query: 7   QLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQ-LRLVNPRDGWPSEKARSSSANA 64
           + +++ + P+ ++L       N+G + R+     +   L L    D W + KA  S+   
Sbjct: 170 ERRDAPQNPLYLVLDGVSDPGNLGTLLRSSVATGVAGVLLLPGSCDPW-APKAIRSAMGT 228

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGI 123
              I  V  F N  E    L  +        NNF +    ++     +  +        +
Sbjct: 229 TFQIP-VETFENWDECREKLVHLGC------NNFWAATMLEDGVGRSHYEVNWLSGPNAL 281

Query: 124 IFGRERWGLT---NEEIALSN---AIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           I G E  GLT    +++A+++     +  P+     SLN +    ++++E M     +
Sbjct: 282 IIGSEGNGLTKPIRDDLAVTSPRLKSVYVPMKAGIESLNAAVCGSVILFEYMRQGETN 339


>gi|332519777|ref|ZP_08396241.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044336|gb|EGI80530.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 152

 Score = 39.3 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            V  E     +    + G E  GL+ + I  S+ ++ F       SLN++ A  ++++
Sbjct: 89  AVALETFHHPRRCVYLLGAEDHGLSKQAIEKSHFLVKF---KSQLSLNVAVAGSIVMY 143


>gi|313204707|ref|YP_004043364.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
           WB4]
 gi|312444023|gb|ADQ80379.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
           WB4]
          Length = 250

 Score = 39.3 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 36/163 (22%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR-----SSSANADCVIDSVRVFSNL 77
           Q   N+G + R    F +T +          S  A       ++  A   +  V+V   +
Sbjct: 111 QDPGNLGTIIRIADWFGITDIF-----CSTHSADAYNTKTVQATMGA---LARVKVH-TV 161

Query: 78  KEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
              + D     A       +   V         + ++  +   + I+ G E  G++ +EI
Sbjct: 162 S--LVDFLLSVA-------HEIPVYGTFMDGENIYDKTLTKHGI-IVMGNEGNGIS-DEI 210

Query: 138 ALSNAIIS-------FPVNPLFP-SLNISQAVLLMVWECMENS 172
                +++       FP+      SLN+  A  L+  E    S
Sbjct: 211 EK---LVTERLLLPNFPLGQATSESLNVGVATALVCAEFRRRS 250


>gi|254369775|ref|ZP_04985785.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122734|gb|EDO66863.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 365

 Score = 39.3 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + +   P+     SLN+S A  + ++E +   
Sbjct: 329 CDFLAKLPMLGEVFSLNVSVATGIALYETVRQR 361


>gi|77360023|ref|YP_339598.1| RNA methyltransferase, TrmH [Pseudoalteromonas haloplanktis TAC125]
 gi|76874934|emb|CAI86155.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 257

 Score = 39.3 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 22/165 (13%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSS 60
           P A QLQ S  G ++ L       N+G + R    + +    +V   D     + K  S+
Sbjct: 106 PQAAQLQTS--GLILALDGVSDPGNLGTIIRVADWYGIK--HIVTSTDSADAYNPKTISA 161

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQN 120
           +  +   +   +V  +L   +A L                +         ++   F+G  
Sbjct: 162 TMGSFVRVSVSQV--DLPAHLATLKL-------------PIYGAFLDGENVHNTQFTGSG 206

Query: 121 VGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           V ++ G E  G+      L    I+ P      SLN++ A  +++
Sbjct: 207 V-LLMGSESHGIREACAKLVTDKITIPAFGQAESLNVAMATGIIL 250


>gi|294661208|ref|YP_003573084.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336359|gb|ACP20956.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 258

 Score = 39.3 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 36/159 (22%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLT---------QLRLVNPRDGWPSEKARSSSANADCVI 68
           +L +     N+G + R    + +          +L   NP+           ++    V 
Sbjct: 114 VLDNISDPGNLGTIIRVADWYGIAGIICSTNTVELY--NPKVLH--------ASMGSFV- 162

Query: 69  DSVRVF-SNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            + +V+ ++L   +A  +  I  T  + +N                 +        II G
Sbjct: 163 -NTKVYYTDLPTYLAQTNLPIIGTFTKGKNLHDP-------------QTVWPSEGLIIIG 208

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            E  G++   +   +  IS P      SLN + A  ++ 
Sbjct: 209 NEAKGISETLLPYIHQKISIPKYGHAESLNAALATAIVC 247


>gi|317059013|ref|ZP_07923498.1| tRNA (guanine-N(1)-)-methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313684689|gb|EFS21524.1| tRNA (guanine-N(1)-)-methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 225

 Score = 39.3 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 70  SVRVFSNLKEAIADLHFI-------YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             RV  +++E IA++  I         T+AR   +F + ++       L E     Q   
Sbjct: 121 RTRVAESIEEVIAEIEKIEGKKPKIVTTSAR---HFPNTVSFGNLQEKLFE--TENQPYL 175

Query: 123 IIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLM 164
           ++FG   WGLT+E +A+S+ I+     N  +  L++  AV ++
Sbjct: 176 LLFGT-GWGLTDEVMAMSDYILEPIRANSEYNHLSVRAAVAII 217


>gi|261885434|ref|ZP_06009473.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp.
          venerealis str. Azul-94]
          Length = 63

 Score = 39.3 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
          I+LV P++  N G + R   N    +L L+ P      +K    + 
Sbjct: 4  IVLVRPEIHTNTGSIGRMCVNSGC-RLHLIKPLGFMLDDKHLERAG 48


>gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 259

 Score = 39.3 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 23  QLGENIGMVARAMWNFNLTQLRL----VNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           Q   N+G + R       T +      V+P     S KA  +   +   +      +   
Sbjct: 122 QDPGNVGTMVRTADAAGFTGVVFGHGSVDPY----SPKALRAMQGSQFHL------TTTT 171

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
             +AD  +  + T    N + + L P+ A +     + +     +I G E  G+  E   
Sbjct: 172 GNLAD--WTASFTQNGMNVYGTQLDPEAADVF---TVPAQTQFALIMGNEGQGMQPELAK 226

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++   +  P++    SLN++ A  + ++  
Sbjct: 227 MTTQNLYIPISGQAESLNVAVAAGIAMFAL 256


>gi|226952113|ref|ZP_03822577.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226837141|gb|EEH69524.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 258

 Score = 39.3 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 19/160 (11%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
            +IL + Q   N+G + R+    N+ Q+          S +   +   A   ++    F 
Sbjct: 116 TLILENIQDPGNVGTLLRSAAAANIKQIVCTQGSATLWSPRVLRAGMGAHFSLNCFENFQ 175

Query: 76  NLKEAIADLHF-IYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
            L E +      ++ T++ R+ + +   L                Q    I G E  G +
Sbjct: 176 -LNEILPKFQIPVFVTSSHRSTSLYSKDLT---------------QPCVWILGNEGQGAS 219

Query: 134 NEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
              +  + A ++ P      SLN++ A  +  +E +   +
Sbjct: 220 EYALEHAQA-VTIPQPGGQESLNVAIAGSICFFEMVRQRL 258


>gi|119946348|ref|YP_944028.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
 gi|119864952|gb|ABM04429.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
          Length = 175

 Score = 39.3 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 45/172 (26%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD----- 65
           +    +I L++P+   N+G V RA           V+      +  A +     D     
Sbjct: 2   AKNKVLIALINPKSPTNVGAVMRAA---GC---YAVDGVLYTGNRYALTMKLKTDTKNIS 55

Query: 66  ---------CVIDSVRVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNER 114
                     ++++      L E  +  D+  +              +   E A  L   
Sbjct: 56  ATIPLRNEPDLLNN------LSENYSNNDIKVVC-------------VDLIEGATPLPNF 96

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           I   +    IFG E   +    +  ++A++  P       LN++  V ++++
Sbjct: 97  IHP-EKALYIFGPEDGTIKQSVVNQADAVVYIPT---IGCLNLAATVNVVLY 144


>gi|324993655|gb|EGC25574.1| SpoU rRNA methylase [Streptococcus sanguinis SK405]
 gi|327462924|gb|EGF09245.1| SpoU rRNA methylase [Streptococcus sanguinis SK1]
 gi|327474528|gb|EGF19933.1| SpoU rRNA methylase [Streptococcus sanguinis SK408]
          Length = 246

 Score = 39.3 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 27/54 (50%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + S ++  ++ G E  G++ E    ++ ++   +     SLN++ A  ++++  
Sbjct: 192 VDSKESFVLVMGNEGQGISPEMTEAADVLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|85098226|ref|XP_960584.1| hypothetical protein NCU01404 [Neurospora crassa OR74A]
 gi|28922085|gb|EAA31348.1| predicted protein [Neurospora crassa OR74A]
 gi|38566824|emb|CAE76131.1| related to rRNA (guanine-N1-)-methyltransferase [Neurospora crassa]
          Length = 644

 Score = 39.3 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 18/191 (9%)

Query: 7   QLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
              ++   P++++VD  L   N+G + R++     T + +        +  A  +SA A 
Sbjct: 455 AASSATHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRDSASLTPVALKASAGAS 514

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSG 118
             +    +  +L + + D       +YA    T+ + N  K +         + E    G
Sbjct: 515 ESLTLFSI-DHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHL-----DLHEIEEIDPLG 568

Query: 119 QNVGI-IFGRERWGLTNEEIALSNAIISFP-VNPL--FPSLNISQAVLLMVWECMENSIV 174
           +N  I + G E  GL  +  + ++  ++ P ++      SLN+S A  L+    M+  + 
Sbjct: 569 KNPCILLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGLLTSAFMKGQVK 628

Query: 175 SSEKNVKEQNT 185
           S  +  K Q  
Sbjct: 629 SEFEQFKVQEE 639


>gi|78224063|ref|YP_385810.1| hypothetical protein Gmet_2867 [Geobacter metallireducens GS-15]
 gi|78195318|gb|ABB33085.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 193

 Score = 39.3 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 30/155 (19%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NA------DCVIDSVRVFSNLKE 79
           +AR+   F L    +V P  G      R          A         ++ +++ + L +
Sbjct: 40  IARSARTFGLLSYYIVTPVPGQQELAGRIVRHWQEGWGATYNPKRKAALELIKIAATLND 99

Query: 80  AIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERI--FSGQNVGIIFGRERW 130
           A+ D+         +  T AR        L P+       + +     Q   ++FG   W
Sbjct: 100 ALEDMQERFGRPVRLVTTGAR--------LHPRSVTFSDLQHLITERDQPYLLLFGT-GW 150

Query: 131 GLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLM 164
           GL  E    ++ ++        +  L++  A  ++
Sbjct: 151 GLVEEVFEKADLVLEPIQGAGDYNHLSVRSAAAII 185


>gi|319406810|emb|CBI80443.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
           1-1C]
          Length = 271

 Score = 39.3 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 31/161 (19%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA-- 64
           LQN  +  +I +L      E++G + R    F  T + L          K+  +SA A  
Sbjct: 115 LQNLPEKALISVLCGISNYESMGAIFRNAAAFASTGIILDKTCCDPLYRKSIRASAGAAL 174

Query: 65  -------DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
                  D +        ++  A++D +F   T           L+P     + + +   
Sbjct: 175 SVPYTRGDDI-------ESIITALSDANFELYT-----------LSPSATCYLKDAKAT- 215

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            ++  +IFG E   L    +  S  +   P+   F S+N++
Sbjct: 216 -KHTALIFGIEGNDLPTHILQKSETL-RIPMAYGFDSINLA 254


>gi|257452472|ref|ZP_05617771.1| hypothetical protein F3_05340 [Fusobacterium sp. 3_1_5R]
          Length = 188

 Score = 39.3 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 70  SVRVFSNLKEAIADLHFI-------YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             RV  +++E IA++  I         T+AR   +F + ++       L E     Q   
Sbjct: 84  RTRVAESIEEVIAEIEKIEGKKPKIVTTSAR---HFPNTVSFGNLQEKLFE--TENQPYL 138

Query: 123 IIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLM 164
           ++FG   WGLT+E +A+S+ I+     N  +  L++  AV ++
Sbjct: 139 LLFGT-GWGLTDEVMAMSDYILEPIRANSEYNHLSVRAAVAII 180


>gi|78186184|ref|YP_374227.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
 gi|78166086|gb|ABB23184.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
          Length = 265

 Score = 38.9 bits (90), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 14/165 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P   +   S +  ++ L + Q   N G + R         L L  P            S+
Sbjct: 106 PLPYERPYSGRALLVALDEVQDPGNAGTILRTAAWLGADGL-LAGPGTVDLYNAKTVRSS 164

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
               +        +L  A+  L          +  FK + +  E            +   
Sbjct: 165 AGSLLGMPHTRAGDLPAALRQLQ---------KAGFKVICSSLE-GEDFRSGGAWPERTV 214

Query: 123 IIFGRERWGLTNEEIALSNAIISFP---VNPLFPSLNISQAVLLM 164
           ++ G E  G+  E   L++ ++  P         SLN + +  ++
Sbjct: 215 LVVGNEANGVGPEVRVLADRLVKIPHGRGPARVESLNAAVSAAIL 259


>gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 246

 Score = 38.9 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R      +    ++      P +     ++          VF  L   I 
Sbjct: 114 QDPGNLGTLIRTADAAGM-DAVIMEKGTTDPYQDKVLRASQGS-------VFH-LPVMIQ 164

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL                V        V  + + S  +  ++ G E  G+  E +A +  
Sbjct: 165 DLDTFIT------QFNGPVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQ 218

Query: 143 IISFPVNPLFPSLNISQAVLLMVWEC 168
            +  P+     SLN++ A  ++++  
Sbjct: 219 NLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|154334197|ref|XP_001563350.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060366|emb|CAM37527.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 526

 Score = 38.9 bits (90), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 104 PKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVL 162
           P+E              V  +FG E   L+   +    + ++  P      S+N++  V 
Sbjct: 424 PREKDAAFTAAPLPM--VFYVFGAEDGTLSAHHLQHDVDDVVFIPTT---GSMNLAATVN 478

Query: 163 LMVW-----ECMENSIVSSEKNVK 181
           ++++     EC       ++    
Sbjct: 479 VLLYDRLAKECRRLHPAVADATAA 502


>gi|320327784|gb|EFW83792.1| hypothetical protein PsgRace4_23395 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 143

 Score = 38.9 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI--VSSE 177
               IFG E   L  +       ++  P       +N++  V +++++ M   I   S  
Sbjct: 74  RALYIFGPEDGSLDQDIRDWCEDVVYIPTE---GCMNLAATVNVVLYDRMAKGINTRSGP 130

Query: 178 KNVKEQNTPATK 189
           +  +E+  PA+ 
Sbjct: 131 QFGREKIDPASD 142


>gi|83764572|dbj|BAE54716.1| unnamed protein product [Aspergillus oryzae]
          Length = 495

 Score = 38.9 bits (90), Expect = 0.68,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 39/168 (23%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+ +   +  +          S     +SA A    +++     L E   ++
Sbjct: 319 PGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAA---ENM----TLLEVSNEV 371

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLN----------------ERIFSGQNVGIIFGRE 128
            FI     R++ N     A                         E + +     I+ G E
Sbjct: 372 DFI----QRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSE 427

Query: 129 RWGLTNEEIALSNAIISFP-----------VNP-LFPSLNISQAVLLM 164
             GL+    + +++I+S P            +P    SLN+S A  L+
Sbjct: 428 GSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALL 475


>gi|305663494|ref|YP_003859782.1| ATPase [Ignisphaera aggregans DSM 17230]
 gi|304378063|gb|ADM27902.1| ATPase [Ignisphaera aggregans DSM 17230]
          Length = 340

 Score = 38.9 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 15/119 (12%)

Query: 16  VIILVDPQLG---ENIG----MVARAMWNF---NLTQLRLVNPRDGWPSEKARSSSANAD 65
           +++LV    G   E IG       R MWN       +L  V P      E     +    
Sbjct: 161 IVVLVSSSEGVTRERIGRHRWATFRIMWNMPRDGFRKLYEVLPEPKPSFEDVWRVAGGNP 220

Query: 66  CVIDSVRV----FSN-LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            +++++ +    F N L E I D      T   N    +++        ++ ER+   +
Sbjct: 221 DILETLYISGWSFDNILTEFIRDRKLRSFTAMLNEKERRALEEIIYDPDIILERLREPE 279


>gi|217976553|ref|YP_002360700.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
           silvestris BL2]
 gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
           silvestris BL2]
          Length = 293

 Score = 38.9 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G V++L       N+G +AR    F +  L +        +     +++     ++ V 
Sbjct: 143 SGVVLVLDQITDPHNVGAIARTAAAFRVDALVMTERHAPELTGVLAKAASGG---LEHVP 199

Query: 73  VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           +       I  ++   A  A     +  V    E    L +   S + + +I G E  GL
Sbjct: 200 I-------IHVVNLARALRALKDQGYLRVGLDSEGESTLTDAPLS-RPLALILGGEGKGL 251

Query: 133 TNEEIALSNAIISFPVNPLFPSLNIS 158
                   + +    +     SLN+S
Sbjct: 252 RRLTRENCDLVARLDMPGPIKSLNVS 277


>gi|289665109|ref|ZP_06486690.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 197

 Score = 38.9 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 23/146 (15%)

Query: 25  GENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVI-----DSVRVFSNLK 78
             N G + R+  +F +  L L      G     AR +   A+ V      D+    + L+
Sbjct: 56  PHNFGAMLRSSAHFGVAGLLLPAASTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLR 115

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +A     F  A T  +             A  L +R+        + G E  G+      
Sbjct: 116 QA----GFAIAATLVDGGQ-------DVFAAALPQRL------VYVMGAESEGMDRAFAR 158

Query: 139 LSNAIISFPVNPLFPSLNISQAVLLM 164
             +  +S   +    SLN++ A  + 
Sbjct: 159 DCDLQLSIRGSGKVESLNVASATAVF 184


>gi|320157988|ref|YP_004190366.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
 gi|319933300|gb|ADV88163.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +   +      + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V  +L   +   +               +         ++   FS Q + ++ G E 
Sbjct: 157 VSLV--DLPSYLEQANL-------------PIYGAFLEGESVHNMTFSAQGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGVREQASKFVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|148272891|ref|YP_001222452.1| hypothetical protein CMM_1709 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830821|emb|CAN01762.1| unnamed protein product [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 269

 Score = 38.9 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 24/141 (17%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANA------DCVIDSVRVFSNLKE 79
           N+G + RA+         L+ PR   P   ++   S           + +       L E
Sbjct: 132 NVGAIFRAVAGIG-ADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHE 190

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG-QNVGIIFGRERWGLTNEEIA 138
           A    H                LA ++ A+ L+       + + ++ G E  GL+   + 
Sbjct: 191 A--GFHLAA-------------LALEDDAVTLDAFAADPPERIALVLGTEGDGLSRHALR 235

Query: 139 LSNAIISFPVNPLFPSLNISQ 159
            +++ +  P+     SLN++ 
Sbjct: 236 HADSTVVIPMLHGVDSLNVAA 256


>gi|89900788|ref|YP_523259.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
 gi|89345525|gb|ABD69728.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
          Length = 264

 Score = 38.9 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 17/166 (10%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSA 62
           P    LQ       +IL   Q   N+G + R+   F   Q+  +       S K   +  
Sbjct: 105 PLVAALQPVMAS--VILDRVQDAGNVGSILRSASAFGFKQVIALKGTAALWSPKVLRAGM 162

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
            A   +  +   +    A+  +  +   T+ +R ++                        
Sbjct: 163 GAHWGLQLIEGVALADLALLAVPIVV--TSSHRGSYLH---------QAIANQALPMPCA 211

Query: 123 IIFGRERWGLTNEEIALSNAIISF--PVNPLFPSLNISQAVLLMVW 166
              G E  G++ E  AL+   +    P      SLN++ A  + + 
Sbjct: 212 WALGHEGQGVSAELEALARLHVRIAQPGGEE--SLNVAAAAAICLH 255


>gi|52424303|ref|YP_087440.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306355|gb|AAU36855.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 369

 Score = 38.9 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 23/154 (14%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           IIL + +  +NIG + R    + +    +V+  +   S  A   +      I  ++   +
Sbjct: 229 IILDNVRNPQNIGGIIRTCAFYGVKG-VIVDNAELLNSAAAMRVAEGGMEYIHQLQT-ES 286

Query: 77  LKEAI-----ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             +A+     A    ++ TT +       +   K+   VL E     +N  ++    + G
Sbjct: 287 PDDALAKLRKAGYQVVHTTTNKQAKGVHKLQLAKKVVFVLTES----ENPALV----QSG 338

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
              +E+   +       NPL   LN++ A  +++
Sbjct: 339 ---DEVINLSF-----ANPLKTGLNVAVAAGVLL 364


>gi|71650732|ref|XP_814058.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878998|gb|EAN92207.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 409

 Score = 38.9 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+ +   +  + L    D      A + ++    V++ + V+ ++   +   
Sbjct: 204 PGNVGAIMRSAFFLGVRCVVL--SCDSAGCTAAMARASAG--VMEHMAVYRSV---VPTT 256

Query: 85  HFIYATTARNRNNFKS----------------VLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            F+  T A++R                     + + ++      +     +   ++ G E
Sbjct: 257 TFLENTIAQHRARGDPCSLEMYAAITIPMHAIMRSGRQPKEETEKGGEPMRRRLLLLGNE 316

Query: 129 RWGLTNEEIALSNAIISFPV 148
             GL  E + L +  +  P 
Sbjct: 317 DKGLPPEVVRLCSHAVHIPS 336


>gi|282877059|ref|ZP_06285902.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
 gi|281300830|gb|EFA93156.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
          Length = 288

 Score = 38.9 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 24/179 (13%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           + P   +     V+ L   Q   N+G + R    F +  +          + K   ++  
Sbjct: 127 HMPAHIDPTHELVLALDGIQDPGNLGTIIRIADWFGIRNVICSEDTADVYNPKVVQATMG 186

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG- 122
           +   +D    + NL        F+ A              P    ++  E I+       
Sbjct: 187 SIAHVD--VTYLNL------CDFVDAL---------PASTPVYGTLLDGEDIYQQTLTAT 229

Query: 123 --IIFGRERWGLTNEEIALSNAIISFP---VNPLFP-SLNISQAVLLMVWECMENSIVS 175
             II G E  G++ +  A  N  +  P     P    SLN++ A  +   E    +I +
Sbjct: 230 GIIIMGNEGNGISKDLRARINHALLIPNFSTLPNKAESLNVAIATAIACSEFKRRTITT 288


>gi|220925797|ref|YP_002501099.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219950404|gb|ACL60796.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 272

 Score = 38.9 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 12/152 (7%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           N+G + R    F    + L          KA   SA     +   RV  + +  +A  H 
Sbjct: 133 NVGGLFRNAAAFGADAVILDAATCDPLYRKAIRVSAGTALTMPFGRV-PDGEALLALCHR 191

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
                          L P  A       +       ++ G E  GL    +A S   +  
Sbjct: 192 --------HGLVPVALTP--AGEEDIAALPPLPRALLLLGTEGTGLPEALMARSRR-VRI 240

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            + P   SLN++ A  + +       + +   
Sbjct: 241 AMAPGVDSLNVAAAGAVALHRLAGARLAARPA 272


>gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 272

 Score = 38.9 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           +II+       N+G + R+   F    +   N      S     +++ A  +I+ + V  
Sbjct: 125 IIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITV-R 183

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +   +    +  K  L          E   +G  + +I G E  GL  +
Sbjct: 184 NLFKALQELHQMNFISFGLDSEGKFPL----------ETALTGTKISLILGAEGKGLRQK 233

Query: 136 EIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
                 ++    +     SLN+S A  + ++   +
Sbjct: 234 TRENVYSLARLDLPGDIKSLNVSNAAAIALYAVHK 268


>gi|290994023|ref|XP_002679632.1| predicted protein [Naegleria gruberi]
 gi|284093249|gb|EFC46888.1| predicted protein [Naegleria gruberi]
          Length = 209

 Score = 38.9 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +   I  G E+ G+  E ++L +  +  P   +  SLN+  +  +M++   E  +
Sbjct: 152 ERCCICLGNEKEGMPPELLSLMDTCVEIPQLGVLRSLNVHVSASIMIYRYTEQFL 206


>gi|238504252|ref|XP_002383357.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
 gi|220690828|gb|EED47177.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
          Length = 495

 Score = 38.9 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 39/168 (23%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+ +   +  +          S     +SA A    +++     L E   ++
Sbjct: 319 PGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAA---ENM----TLLEVSNEV 371

Query: 85  HFIYATTARNRNNFKSVLAPKEAAIVLN----------------ERIFSGQNVGIIFGRE 128
            FI     R++ N     A                         E + +     I+ G E
Sbjct: 372 DFI----QRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSE 427

Query: 129 RWGLTNEEIALSNAIISFP-----------VNP-LFPSLNISQAVLLM 164
             GL+    + +++I+S P            +P    SLN+S A  L+
Sbjct: 428 GSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALL 475


>gi|254470423|ref|ZP_05083827.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
           JE062]
 gi|211960734|gb|EEA95930.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
           JE062]
          Length = 289

 Score = 38.9 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEAIA 82
             N+G + R+    N     +V  R   P E      +++ A  +I  VR+  N+   + 
Sbjct: 150 PHNVGAILRSAVALNAD--AVVTTRRHAPEEGPVLAKTASGALDMIKHVRI-QNMSRFVE 206

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           ++          R+     +A         E         ++ G E  G+        + 
Sbjct: 207 EM----------RDKGYQAIALDSEGPEAVENTAFTDKTLLVLGSEGKGVREGVRKSCDT 256

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
           +    +     SLN+S A +L ++    
Sbjct: 257 LARLDMPGEIKSLNVSNAAILSLYVARM 284


>gi|254505367|ref|ZP_05117514.1| rRNA methylase [Vibrio parahaemolyticus 16]
 gi|219551484|gb|EED28462.1| rRNA methylase [Vibrio parahaemolyticus 16]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +          + K  S++  +     
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNPKTISATMGS---FG 153

Query: 70  SVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            V V   +L   +   +               V         +++  F+ + + ++ G E
Sbjct: 154 RVTVSQLDLPSYLEQSNL-------------PVYGAFLEGESVHKTEFAAEGI-LLMGSE 199

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+  +        I+ P      SLN++ A  +++      
Sbjct: 200 SHGIREQAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQ 242


>gi|326560889|gb|EGE11254.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
 gi|326570818|gb|EGE20843.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
            +  G  +IL   Q   NIG + R      +    + +P      S K   +   A    
Sbjct: 107 PTISGDCLILDGLQDLGNIGTLLRTASAVGIQT-VITSPNTAHLWSPKCLRAGMGAHF-- 163

Query: 69  DSVRVFSNLK--EAIADLHF-IYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            S+ ++ ++   E +  L   +YAT++  N+  +   L                  +  +
Sbjct: 164 -SISIYEHIAVNEILQKLKTPLYATSSHTNKVIYDHDLT---------------SPIAWV 207

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+ +E +  +   I+ P      SLN+  A  +  +E +   
Sbjct: 208 LGHEGQGVRDEFLNNA-IPIALPQPGGQESLNVGIAGSVCFYEMLRQR 254


>gi|37675829|ref|NP_936225.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37200368|dbj|BAC96195.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 16/162 (9%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +   +      + K  S++  +   + 
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASSDCADPYNPKTISATMGSFGRVQ 156

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
              V  +L   +   +               +         +++  FS Q + ++ G E 
Sbjct: 157 VSLV--DLPSYLEQANL-------------PIYGAFLEGESVHKTTFSAQGI-LLMGSES 200

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G+  +        I+ P      SLN++ A  +++      
Sbjct: 201 HGVREQASKFVTDKITIPAFGGAESLNVAMATGIILDNIRRQ 242


>gi|327490084|gb|EGF21872.1| SpoU rRNA methylase [Streptococcus sanguinis SK1058]
          Length = 246

 Score = 38.9 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 25/50 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++  ++ G E  G++ E    ++ ++   +     SLN++ A  ++++  
Sbjct: 196 ESFVLVMGNEGQGISPEMTEAADLLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|261252040|ref|ZP_05944614.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
 gi|260938913|gb|EEX94901.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
             A+G +I L       N+G + R    + +  +   +      + K  S++  +     
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMGS---FG 153

Query: 70  SVRVFS-NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            V V   +L   +   +               V         ++   F+ + + ++ G E
Sbjct: 154 RVTVSQLDLPSYLEQSNL-------------PVYGAFLEGESVHRTDFAAEGI-LLMGSE 199

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+  +        I+ P      SLN++ A  +++      
Sbjct: 200 SHGIREQAAKFVTDKITIPAFGGAESLNVAMATGIILDNLRRQ 242


>gi|209550660|ref|YP_002282577.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536416|gb|ACI56351.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 274

 Score = 38.9 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 48/167 (28%), Gaps = 14/167 (8%)

Query: 7   QLQNSAKGPVIILVDP--QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
            L  +     ++LV       +N G + R    F    L L          KA   S  +
Sbjct: 116 ALLEALPERALVLVGCGISNHDNAGSMFRNAAAFRADALLLDETCCDPLYRKALRVSVGS 175

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
                      ++             +   R      L+P          I +   + ++
Sbjct: 176 ---------VLSVPHLRGGKAMDVLLSLAERGFAIWTLSP--HGKTDIRAIPASARMALV 224

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            G E  GL    +A  ++    P +    SLN + A  + ++     
Sbjct: 225 IGTEGEGLPEALLARFHSA-RIPQSEDLDSLNAATATGIALFSMASA 270


>gi|255566751|ref|XP_002524359.1| RNA binding protein, putative [Ricinus communis]
 gi|223536320|gb|EEF37970.1| RNA binding protein, putative [Ricinus communis]
          Length = 1744

 Score = 38.9 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +   ++ GRE+ G+  + I + +A I  P   +  SLN+  +  + +WE     
Sbjct: 1688 KKTVLVLGREKEGVPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1741


>gi|224138732|ref|XP_002326676.1| predicted protein [Populus trichocarpa]
 gi|222833998|gb|EEE72475.1| predicted protein [Populus trichocarpa]
          Length = 1224

 Score = 38.9 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +   ++ GRE+ G+  + I + +A I  P   +  SLN+  +  + +WE     
Sbjct: 1168 KKTVLVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1221


>gi|326577747|gb|EGE27623.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 25/168 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
            +  G  +IL   Q   NIG + R      +    + +P      S K   +   A    
Sbjct: 107 PTISGDCLILDGLQDLGNIGTLLRTTSAVGIQT-VITSPNTAHLWSPKCLRAGMGAHF-- 163

Query: 69  DSVRVFSNL--KEAIADLHF-IYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            S+ ++ ++   E +  L   +YAT++  N+  +   L                  +  +
Sbjct: 164 -SISIYEHIAVDEILQKLKTPLYATSSHTNKVIYDHDLT---------------GPIAWV 207

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+ +E +  +   I+ P      SLN+  A  +  +E +   
Sbjct: 208 LGHEGQGVRDEFLNNA-IPIALPQPGGQESLNVGIAGSVCFYEMLRQR 254


>gi|332359132|gb|EGJ36953.1| SpoU rRNA methylase [Streptococcus sanguinis SK49]
          Length = 246

 Score = 38.9 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 24/46 (52%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           ++ G E  G++ E  A ++ ++   +     SLN++ A  ++++  
Sbjct: 200 LVMGNEGQGISPEMTAAADVLVHISMKGQAESLNVAVAAGILIFHL 245


>gi|323456726|gb|EGB12592.1| hypothetical protein AURANDRAFT_6321 [Aureococcus anophagefferens]
          Length = 173

 Score = 38.9 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMV 165
                   + G E  GL   +IAL + ++  P   P   SLN++ A  +++
Sbjct: 100 APALPACFMPGNEGEGLLPNQIALCDRLVYVPQFAPATASLNVNAATAVVL 150


>gi|322505046|emb|CBZ14721.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 465

 Score = 38.9 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 96  NNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERWGLTNEEIALSNAIISFPVNPLF 152
                   P +       R FSG+      ++ G E  GL+ + +   +  +  P     
Sbjct: 107 TPTHPCAFPVQELAWNKHRHFSGRQSAGVELVLGMEN-GLSQKVVEECDLCMYIPQYGSI 165

Query: 153 PSLNISQAVLLMVWECMENSI--VSSEKNVKEQNTPATKG 190
            SL++  A+ +        ++   S+  ++      A+ G
Sbjct: 166 GSLSMISALAIAAHSTWREAVQEESNTSHISIAPQRASHG 205


>gi|315917496|ref|ZP_07913736.1| tRNA (guanine-N(1)-)-methyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691371|gb|EFS28206.1| tRNA (guanine-N(1)-)-methyltransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 225

 Score = 38.9 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 18/105 (17%)

Query: 70  SVRVFSNLKEAIADLHFI-------YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             RV  +++E IA++  I         T+AR  +   +V         L E++F  +N  
Sbjct: 121 RTRVAESIEEVIAEIEKIEGKKPKIVTTSAR--HFPNTVSF-----ANLQEKLFETENQP 173

Query: 123 --IIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLM 164
             ++FG   WGLT+E +A+S+ I+     N  +  L++  AV ++
Sbjct: 174 YLLLFGT-GWGLTDEVMAMSDYILEPIRANSKYNHLSVRAAVAII 217


>gi|297800328|ref|XP_002868048.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313884|gb|EFH44307.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1852

 Score = 38.9 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 11/147 (7%)

Query: 27   NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAIADLH 85
            N+  +AR    F  + L  V   +    ++ +  S  A+  +  + V  ++LK  +    
Sbjct: 1713 NLAGLARTCEVFKASNLA-VADANIIHDKQFQLISVTAEKWVPIMEVPVNSLKLFLE--- 1768

Query: 86   FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                   + R  F  +   + A  V  ++    +   ++ GRE+ G+  + I + +A I 
Sbjct: 1769 ------KKKREGFSILGLEQTANSVSLDKYQFPKKTVLVLGREKEGIPVDIIHILDACIE 1822

Query: 146  FPVNPLFPSLNISQAVLLMVWECMENS 172
             P   +  SLN+  +  + +WE     
Sbjct: 1823 IPQLGVVRSLNVHVSGAIALWEYTRQQ 1849


>gi|294651075|ref|ZP_06728412.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823024|gb|EFF81890.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           Q    I G E  G +   +  + A ++ P      SLN++ A  +  +E +   +
Sbjct: 205 QPCVWILGNEGQGASEYALEHAQA-VTIPQPGGQESLNVAIAGSICFFEMVRQRL 258


>gi|294945420|ref|XP_002784671.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239897856|gb|EER16467.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 222

 Score = 38.9 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 61/168 (36%), Gaps = 30/168 (17%)

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             F  + EA  +L        + R      +    ++  + +  + G +   + G E  G
Sbjct: 69  EFFDTIAEAKEEL--------KRRGITLCGVEIHPSSEPIQDMHWRG-DTCFMLGNEGTG 119

Query: 132 LTNEEIALSNAIISFPVNPLF----PSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
           +T+++IA  +          +     SLN++ A  +++      ++ S     + +    
Sbjct: 120 MTDKQIAACDQFTYI---QQYTKATASLNVAVAGSIVLHHF---ALASGMPVAERKGQKF 173

Query: 188 TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMREE 235
              E    LD  E          P + +++++++   +  R    ++E
Sbjct: 174 VTDEGRGKLDRYE---------HPTDYEQQVIEEKRRL--RAAKRQKE 210


>gi|328712534|ref|XP_003244835.1| PREDICTED: hypothetical protein LOC100569722 [Acyrthosiphon pisum]
          Length = 140

 Score = 38.9 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 123 IIFGRERWGLTNE--EIALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +I G E  GL++E  E A S   I  + P+     SLN + AV ++ +E  +  +
Sbjct: 70  LIIGGETHGLSDEGYEFARSRKGIRLNIPLENGIESLNSATAVGILCFEAKKQML 124


>gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188]
 gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0635]
 gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188]
 gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0635]
 gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1341]
 gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0630]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|193617942|ref|XP_001949552.1| PREDICTED: RNA methyltransferase-like protein 1-like [Acyrthosiphon
           pisum]
          Length = 386

 Score = 38.9 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 123 IIFGRERWGLTNE--EIALSNAII--SFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +I G E  GL++E  E A S   I  + P+     SLN + AV ++ +E  +  +
Sbjct: 316 LIIGGETHGLSDEGYEFARSRKGIRLNIPLENGIESLNSATAVGILCFEAKKQML 370


>gi|166713190|ref|ZP_02244397.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 303

 Score = 38.9 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 21/178 (11%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           P    L    +GPV+ L    V      N G + R+  +F +  L L       P+    
Sbjct: 141 PLQEWLAALPQGPVLALWLDGVG--NPHNFGAMLRSSAHFGVAGLLL-------PAGSTL 191

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTA--RNRNNFKSVLAPKEAAIVLNERIF 116
             S  A       RV     EA+  +      TA  + R    ++ A             
Sbjct: 192 GLSGAA------ARVAEGGAEAVPLVQLPGTATAMAQLRQAGFAIAATLVDGGQDVFAAA 245

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIV 174
             Q +  + G E  G+        +  +S   +    SLN++ A  +         + 
Sbjct: 246 LPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAWHARVLA 303


>gi|332299114|ref|YP_004441036.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332182217|gb|AEE17905.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 273

 Score = 38.9 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 21/149 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G + R        +  L++P    P   +A  S       +   RV   L+   A 
Sbjct: 140 PFNLGSIFRTAEAMGAER-VLLSPGCADPAHSRALRSGMGCIETMPWERVP--LEALPAG 196

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA- 142
           +                V   +     L+E  F  + + ++ G E  G++ E +      
Sbjct: 197 V---------------PVFVLETGGTPLDEFAFPREGI-VVIGSEELGVSPEALKRGTYG 240

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
            +S P+  L  SLN+  A  +++   + +
Sbjct: 241 RVSIPMKGLKASLNVGVAFGILMQAWVRS 269


>gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0470]
 gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0470]
 gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1342]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|219127773|ref|XP_002184103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404334|gb|EEC44281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 389

 Score = 38.9 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 12/151 (7%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            N+G V R    F +  + L          +A   S      I  VRV  NL +A+  L 
Sbjct: 243 ANLGSVVRCASAFGVHAVLLSKDCCDPWYRRAVRVSMGHIFRIPCVRV-DNLVQALTALS 301

Query: 86  FI-YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV---GIIFGRERWGLTNEEIALSN 141
              +A T+     + +V+ P+  A +L E I  G        I G E  G++ + I  + 
Sbjct: 302 QEPFAVTS-----YAAVIDPR--ADLLLENIAQGAIPKSWCCIVGSEGKGISCDVIQAAT 354

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENS 172
             +   +     SL++  A  +++    E S
Sbjct: 355 TTLRIGMYDHVDSLSVPVATGILLHGLSERS 385


>gi|332358339|gb|EGJ36165.1| SpoU rRNA methylase [Streptococcus sanguinis SK355]
          Length = 246

 Score = 38.9 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 56/147 (38%), Gaps = 13/147 (8%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         + + +      + K   S   +   +   R+        A
Sbjct: 111 QDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRI-DT-----A 164

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSN 141
           D   +       R++   +LA   ++  ++   + S ++  ++ G E  G++ E    ++
Sbjct: 165 DFIRLA------RSSSLPILASTLSSTSIDYREVVSKESFVLVMGNEGQGISPEMTVAAD 218

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++   +     SLN++ A  ++++  
Sbjct: 219 ILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|319786089|ref|YP_004145564.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464601|gb|ADV26333.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
           11-1]
          Length = 301

 Score = 38.9 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 27/176 (15%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P AP L     G            N G + R+  +F    L             AR +
Sbjct: 148 LAPGAPALALWLDGVG-------NPHNFGAILRSAAHFGAAVLLPERSTLALSGAAARVA 200

Query: 61  SANADCVIDSVRVFSNLKEAIADLHFI----YATTARNRNNFKSVLAPKEAAIVLNERIF 116
              A+ V  ++        A+A LH       AT  R+  +  ++               
Sbjct: 201 EGGAEGV--ALVRLPGNDAALARLHAAGFASAATVVRDGEDLFAM--------------Q 244

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
               +  + G E  G+           +S        SLN++ A  + +       
Sbjct: 245 PQPRLVYVMGAEGEGMDAGLAGACQHRVSIAGTGAVESLNVAAATAVFLAHWAAAR 300


>gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5]
 gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5]
 gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
           Ef11]
 gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0027]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1]
 gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3]
 gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol]
 gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1]
 gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
 gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
 gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
 gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4248]
 gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0855]
 gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0109]
 gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 512]
 gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 516]
 gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0102]
 gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
 gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1]
 gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3]
 gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol]
 gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1]
 gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
 gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
 gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
 gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0109]
 gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0855]
 gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4248]
 gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 512]
 gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0102]
 gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 516]
 gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX4000]
 gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2141]
 gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0031]
 gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0312]
 gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0645]
 gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1302]
 gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0309B]
 gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0309A]
 gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62]
 gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|46203294|ref|ZP_00208891.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 132

 Score = 38.9 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 3   PYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRL 45
           P    L      P+++L       N+G +AR M  F L +L +
Sbjct: 79  PADAHLWAKEGKPLLVLDGVGNPHNLGAIARTMAFFGLERLLI 121


>gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862]
          Length = 256

 Score = 38.9 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 18/169 (10%)

Query: 7   QLQNSAKGPVII-------LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
            L  + + P  I       L   Q   NIG + R         +   N      S KA  
Sbjct: 96  SLPTATREPRFIHDGAWLFLDAIQDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKALR 155

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +   +           +L++      +  A T  + N + + L P+  A  L       Q
Sbjct: 156 AMQGSQF--HMTLTTGDLQD------WTAAFTQNDINVYGTQLDPE--AADLFTIPAQSQ 205

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              +I G E  G+  +   ++   +  P+     SLN++ A  + ++  
Sbjct: 206 -FALIMGNEGQGMAADLAKMTTKNLYIPLTGDAESLNVAVAAGIAMFAL 253


>gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4244]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
 gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2134]
 gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
 gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76]
 gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2134]
          Length = 258

 Score = 38.9 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|256028574|ref|ZP_05442408.1| hypothetical protein PrD11_11380 [Fusobacterium sp. D11]
 gi|289766494|ref|ZP_06525872.1| tRNA methyltransferase [Fusobacterium sp. D11]
 gi|289718049|gb|EFD82061.1| tRNA methyltransferase [Fusobacterium sp. D11]
          Length = 187

 Score = 38.5 bits (89), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 19/109 (17%)

Query: 69  DSVRVFSNLKEAIADLH-----------FIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +     +++ E+I D+             I  T+AR  NN  S          L+++IF 
Sbjct: 79  EQAFKVTDVAESIEDVVKEIEKIEGQKPLIITTSARTFNNSISY-------KDLSKQIFE 131

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
                ++     WGLT+E +++S+ I+     N  +  L++  AV +++
Sbjct: 132 DDKPYLLLFGTGWGLTDEVMSMSDYILEPIRANSKYNHLSVRAAVAIIL 180


>gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0017]
          Length = 258

 Score = 38.5 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|298290777|ref|YP_003692716.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
 gi|296927288|gb|ADH88097.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
          Length = 268

 Score = 38.5 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 12/119 (10%)

Query: 50  DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAI 109
                 KA   S     V+   R  S   EAI  L  + A       +   +LA   A  
Sbjct: 158 CDPLYRKAIRVSVGGSLVVPFAREGS--AEAI--LDLLAA-------HGFELLALSPAGE 206

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
                I   +   ++ G E  GL +  +A +   +  P+   F SLN++    + +   
Sbjct: 207 ATLGGIERPKRAALLLGAEGPGLPDHVLARA-RTVRIPMKAGFDSLNVATTSGIALHAL 264


>gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0012]
          Length = 258

 Score = 38.5 bits (89), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|309810611|ref|ZP_07704422.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308435412|gb|EFP59233.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 263

 Score = 38.5 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 17/160 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           +   NIG V R    FN     +V  R  W    A  +                + + +A
Sbjct: 90  EHDFNIGSVIRTANAFNAKAFHIVG-RRRWNRRGAMVT-----DRYQHEFHHPTVDDLLA 143

Query: 83  DLHFIYATTARNRN-----NFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERWGLTNEE 136
                +A TA   +         V+A    A  +    F   ++  ++FG+E  G++ + 
Sbjct: 144 -----WAATAGPVDAAGHPTRLPVIAIDNVAGSVPLEAFDLPEHCVLLFGQEGPGVSADA 198

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +  ++A++         S+N   A  + +   +   +   
Sbjct: 199 LERADAVLDIAQFGSTRSINAGAAAAVTMHAWIRRHVFGQ 238


>gi|297621668|ref|YP_003709805.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297376969|gb|ADI38799.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 239

 Score = 38.5 bits (89), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 47/138 (34%), Gaps = 23/138 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R +  F L  +            +   ++                       
Sbjct: 107 AHNVGSILRTVEAFQLGDVYFSKDTPLPTHPQVSKTAMG--------------------C 146

Query: 85  HFIYAT--TARNRNNFKSVLAPKEAAIVLN-ERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    A      + ++A + ++  +  ++     +  +  G E +GL++E ++ ++
Sbjct: 147 SKEICFQRHASPSELPRPLIALETSSDGIPIDKYTFPSSGCLAVGNEEYGLSDEVLSQAD 206

Query: 142 AIISFPVNPLFPSLNISQ 159
           A++  P+     SLN++ 
Sbjct: 207 AVVEIPLYGKKNSLNVAN 224


>gi|198385788|gb|ACH86230.1| truncated hemoglobin Hb2b [Triticum aestivum]
          Length = 171

 Score = 38.5 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 11/69 (15%)

Query: 166 WECMENSIVSSEKNVKEQNTPA----------TKGELLSFLDYLEISLEERGYFRPVEKK 215
           +E +   +       + +  PA          T      +L +++ +LE      P  K 
Sbjct: 74  YEFLVQRMGGPPLFSQRRGHPALIGRHRPFPVTHRAAERWLHHMQQALETTESINPDTKP 133

Query: 216 KKMLDDLYS 224
            KM++    
Sbjct: 134 -KMMNFFRH 141


>gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
 gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11]
 gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
 gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG]
 gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11]
 gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX2137]
 gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0043]
 gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1346]
          Length = 258

 Score = 38.5 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|257466339|ref|ZP_05630650.1| hypothetical protein FgonA2_02729 [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 188

 Score = 38.5 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 18/105 (17%)

Query: 70  SVRVFSNLKEAIADLHFI-------YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             RV  +++E IA++  I         T+AR  +   +V         L E++F  +N  
Sbjct: 84  RTRVAESIEEVIAEIEKIEGKKPKIVTTSAR--HFPNTVSF-----ANLQEKLFETENQP 136

Query: 123 --IIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLM 164
             ++FG   WGLT+E +A+S+ I+     N  +  L++  AV ++
Sbjct: 137 YLLLFGT-GWGLTDEVMAMSDYILEPIRANSKYNHLSVRAAVAII 180


>gi|257463692|ref|ZP_05628082.1| hypothetical protein FuD12_07555 [Fusobacterium sp. D12]
 gi|317061239|ref|ZP_07925724.1| tRNA (guanine-N(1)-)-methyltransferase [Fusobacterium sp. D12]
 gi|313686915|gb|EFS23750.1| tRNA (guanine-N(1)-)-methyltransferase [Fusobacterium sp. D12]
          Length = 188

 Score = 38.5 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 14/103 (13%)

Query: 70  SVRVFSNLKEAIADLHFI-------YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG 122
             RV  +++E I ++  +         T+AR   N  S  + +E            Q   
Sbjct: 84  RTRVAESIEEVIGEIENVEGKRPKIVTTSARRFPNTVSFSSLQEKLFE-----AEDQPYL 138

Query: 123 IIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLM 164
           ++FG   WGLT+E +A+S+ I+     N  +  L++  AV ++
Sbjct: 139 LLFGT-GWGLTDEVMAMSDYILEPIRANAKYNHLSVRAAVAII 180


>gi|156093651|ref|XP_001612864.1| rRNA methylase [Plasmodium vivax SaI-1]
 gi|148801738|gb|EDL43137.1| rRNA methylase, putative [Plasmodium vivax]
          Length = 314

 Score = 38.5 bits (89), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISF----------PV---NPLFP--SLNIS 158
           R+   +   II G E  GL+ E +  S+A I            P    N  F   SLN++
Sbjct: 240 RLSKNEKAFIILGNETKGLSKEILDRSDACIYISGHHTEEASTPALNSNGNFTLDSLNVN 299

Query: 159 QAVLLMVW 166
            A  +++ 
Sbjct: 300 NACAILLH 307


>gi|260772956|ref|ZP_05881872.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14]
 gi|260612095|gb|EEX37298.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14]
          Length = 244

 Score = 38.5 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCV 67
             A+G +I L       N+G + R    + +    +V   D     + K  S++  +   
Sbjct: 97  PKAQGLMIALDGVSDPGNLGTIIRVADWYGIK--HIVASVDCADPYNPKTISATMGS--- 151

Query: 68  IDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGR 127
                 F  ++ ++ DL    A           V         ++   FS Q + ++ G 
Sbjct: 152 ------FGRVQVSLVDLPHYLA------QANLPVYGAFLEGESVHTTSFSAQGI-LLMGS 198

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           E  G+           I+ P      SLN++ A  +++      
Sbjct: 199 ESHGIRESAAQWVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 264

 Score = 38.5 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 26/155 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADC----VIDSVRVFSNLKE 79
             N+G + R+ W   +    L++P    P S K   +S         ++D       LK 
Sbjct: 123 PGNLGTIIRSGWALGVDG-ILLSPESVDPFSPKVVRASMGGIFNIPLLLDFS--VDELKR 179

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN--EEI 137
              + +  +  + + R               +    F+G ++ +  G E  G+    EEI
Sbjct: 180 LKQNAYTFFCASLQAR-------------QEIFSLDFTGPSL-LAIGSESQGVRPVIEEI 225

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
              +     P+ P   SLN + A  +++ E  +  
Sbjct: 226 --CDFNCKIPIKPGVDSLNAAVACAIIINEAWKQR 258


>gi|118374625|ref|XP_001020500.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila]
 gi|89302267|gb|EAS00255.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
            SB210]
          Length = 3004

 Score = 38.5 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 123  IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
            ++ GRE+ G+  E I + +  +  P      SLN+  + ++ +WE
Sbjct: 2048 LLLGREKTGIPLEYIEILDECVEIPQFGQVRSLNVHVSAVICIWE 2092


>gi|224076560|ref|XP_002196211.1| PREDICTED: similar to MGC84529 protein [Taeniopygia guttata]
          Length = 323

 Score = 38.5 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 105 KEAAIVLNERIFSG-------QNVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFP 153
            E A  + E              V ++ G E  GL+   + L+ +     +  PV P   
Sbjct: 13  DEEAAAMPELAAQHYYEDWARAPVAVVVGGETHGLSPAALGLAASTGGKRLLIPVVPGVD 72

Query: 154 SLNISQAVLLMVWECMENSI 173
           SLN + A  ++++E     +
Sbjct: 73  SLNSAIAAGIVLFEGKRQLL 92


>gi|301168477|emb|CBW28067.1| SpoU rRNA Methylase family protein [Bacteriovorax marinus SJ]
          Length = 252

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 19/114 (16%)

Query: 61  SANADCVIDSVRVFSNLKEAIADL----HFIYATTARNRNNFKSVLAPKEAAIVLNERIF 116
           ++ A   + ++ + S+L +AI  L      +   +              E A    + + 
Sbjct: 154 ASGAIEHV-NIVICSSLPKAITKLIEKNVSVIGFS--------------EHAKEDGDGVD 198

Query: 117 SGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
              +V ++ G E  G++N    +    ++        SLN+S A  + +   ++
Sbjct: 199 ISGHVALVLGAEDVGMSNAVSRVVEHRVAIKPLGKIKSLNVSVAAAIAMERWLK 252


>gi|212691896|ref|ZP_03300024.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
 gi|212665568|gb|EEB26140.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
          Length = 254

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 20/149 (13%)

Query: 3   PYAPQLQNSAKGPVII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           P   ++    +  V+I  +VD     NIG + R+     +  + L        + +A   
Sbjct: 92  PSMEEICRDTRRIVVIDGVVDTT---NIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 148

Query: 61  SANADCVIDSVRVFSNLKEA--IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
           S  +  ++    +   + +   +       A T  + +    +L              + 
Sbjct: 149 SMGSVFLVPWTWLDGTIGDLNKLGFRTAAMALTDDSISIDHPIL-------------AAE 195

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFP 147
             + I+ G E  GL+ + IA ++    +P
Sbjct: 196 PRLAIVMGTEGEGLSYKTIAEADYCSPYP 224


>gi|188579913|ref|YP_001923358.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
 gi|179343411|gb|ACB78823.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
          Length = 149

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 25/160 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L  P + +N G + R      +  + ++ P     S++    S      +D V +  +  
Sbjct: 6   LYQPDIPQNTGTMLRMAACLGVA-VEIIEPAGFDVSDRHLRRS--GLDYLDHVAITRHRS 62

Query: 79  -EAI------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +A       A L  + ATTA      +      +                ++ GRE  G
Sbjct: 63  WDAFQAWRQEARLRLVLATTAGALPYTQHAFRDGDC---------------LLMGRESAG 107

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +       ++A +  P+ P   SLN++    +++ E +  
Sbjct: 108 VPEAVHTAADARVVVPIRPGLRSLNVAVCAAIILGEAIRQ 147


>gi|311112473|ref|YP_003983695.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310943967|gb|ADP40261.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 246

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 15/156 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    F   ++ ++  +  W    A  +          VR    +++   
Sbjct: 106 QHDLNIGTVVRTANAFLAKEVHIIG-KKRWNRRGAMVT-----DRYQHVRHHPTIED--- 156

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F+        +     + P    +   +     +N  ++FG+E  GL+ E  A +  
Sbjct: 157 ---FVAWAQGEGLDIIGIDIFPDSVPLETYDLP---KNCVLVFGQEGPGLSEEIHAAARD 210

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            +S        S+N + A  + +   +   +   + 
Sbjct: 211 TLSIEQFGSTRSMNAATAAGIAMHAWVRRHVFGQKP 246


>gi|239047833|ref|NP_001141631.2| hypothetical protein LOC100273751 [Zea mays]
 gi|238908839|gb|ACF86752.2| unknown [Zea mays]
          Length = 549

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 42/198 (21%)

Query: 1   MTPYAPQLQNSAKGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARS 59
           +    P      K PV I L +    +N+G + R+ + F    + L        S     
Sbjct: 347 IKELDPVRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVVLCAKNSAPLSGVVSK 406

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVL--APKEAAIVLNERIFS 117
           +SA +  +I+           +     +    + +  N   VL       A+ L+ ++  
Sbjct: 407 ASAGSLELIE-----------LLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLS-QVEL 454

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP------------------------ 153
           G    ++ G E  GL          ++  P N                            
Sbjct: 455 GVPTILVMGSEGTGLRPLVERSCTHLVRIPGNVDVSVEGADADAGEEGDSSSNRDLRSFL 514

Query: 154 ---SLNISQAVLLMVWEC 168
              SLN+S A  ++++  
Sbjct: 515 AVESLNVSVAAGVLLYHL 532


>gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 296

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   FN     ++  +   P+E    +  ++ A  +I  +++ +
Sbjct: 151 VLDQVTDPHNVGAIMRSAVAFNAG--AVITTQRHSPTESGVLAKSASGALELIPYIQI-T 207

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +  +T    +   + L          E  FSG  V ++ G E  GL  +
Sbjct: 208 NLADALGELHKLGFSTIGLDSEGPAPL----------EGTFSGDKVALVLGSEGKGLRQK 257

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                 A+    +     SLN+S 
Sbjct: 258 TRETVTALARLDMPGAIKSLNVSN 281


>gi|294814058|ref|ZP_06772701.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294326657|gb|EFG08300.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 363

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 53/194 (27%), Gaps = 61/194 (31%)

Query: 5   APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           A    +  + P+I+ L       N+G V R++  F      +V      P  +A   +A 
Sbjct: 204 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAG 256

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A                         T AR          P   A  L   + S Q  G+
Sbjct: 257 AW-------------------KTSAGTAAR---------TPVARATNLTRALESYQKAGL 288

Query: 124 IF------GRERWG-------------------LTNEEIALSNAIISFPVNPLFPSLNIS 158
                   G    G                   L+       + ++  P+     SLN  
Sbjct: 289 TVVGLAADGEHEVGDLEALGGPVVVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAG 348

Query: 159 QAVLLMVWECMENS 172
            A  ++++E     
Sbjct: 349 VAAGVVLYEAARRR 362


>gi|115699928|ref|XP_782457.2| PREDICTED: similar to TAR RNA loop binding protein
            [Strongylocentrotus purpuratus]
 gi|115978414|ref|XP_001188472.1| PREDICTED: similar to TAR RNA loop binding protein
            [Strongylocentrotus purpuratus]
          Length = 1252

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            Q   ++ G+ER G+  E I   +  +  P      SLN+  +  LM+WE     ++ 
Sbjct: 1193 QRTMLLLGKEREGIPVELIQFLDVCVEIPQLGFIRSLNVHVSGALMIWEYTRQKLLG 1249


>gi|219117827|ref|XP_002179701.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408754|gb|EEC48687.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 169

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP----SLNISQAVLLMVW 166
           ++   + G E  G+  + +   +A ++ P    +     SLN+  A  +++ 
Sbjct: 105 KDTAFLMGNEGQGINEKHMKSCDAFVTIP---QYGGGTASLNVYVAASIVLH 153


>gi|86741865|ref|YP_482265.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
 gi|86568727|gb|ABD12536.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
          Length = 297

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               +  + A +R+                           +FG E  GL +  +A ++A
Sbjct: 203 GCRIVATSGAADRDID-----------TAVAAGELDGPTAWLFGNEAHGLASATLAAADA 251

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENS 172
           ++  PV     SLN++ A  L ++      
Sbjct: 252 VLRVPVYGQAESLNLAVASALCLYASARAQ 281


>gi|283769025|ref|ZP_06341931.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
 gi|283104382|gb|EFC05759.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
          Length = 237

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFP-VNPLFPSLNISQAVLL 163
           ++ AIV +E  ++   V  + G E  GL+ + +   +  +  P  N    +LN + A  +
Sbjct: 167 RDNAIVYDEADYTNPTVFCV-GGELRGLSKQVLEQVDQAVYIPYANGFKNALNAASACSV 225

Query: 164 MVWECMENS 172
             +E +   
Sbjct: 226 FCFEVLRQR 234


>gi|241123159|ref|XP_002403800.1| hypothetical protein IscW_ISCW002074 [Ixodes scapularis]
 gi|215493536|gb|EEC03177.1| hypothetical protein IscW_ISCW002074 [Ixodes scapularis]
          Length = 316

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 15/128 (11%)

Query: 48  PRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI-ADLHFIYATTARNRNNFKSVLAPKE 106
           PRD       +++  +   V+   ++   L+E   A    + A              PK 
Sbjct: 203 PRDDDLGPAKKTACRDGLVVVKPHQLKEYLEEKRNAGYTLVGAEQTAGSKALHDYRFPK- 261

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                           ++ G E+ GL  E I L +  +  P   +  SLN+  +    +W
Sbjct: 262 -------------KTLLLLGNEKEGLPVELIQLLDVCVEIPQRGVIRSLNVHVSGASWIW 308

Query: 167 ECMENSIV 174
           E  +  + 
Sbjct: 309 EYAKQHLT 316


>gi|71668065|ref|XP_820976.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886341|gb|EAN99125.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 408

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 23/140 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+ +   +  + L    D      A + ++    V++ + V+ ++   +   
Sbjct: 204 PGNVGAIMRSAFFLGVRCVVL--SCDSAGCTAAMARASAG--VMEHMAVYRSV---VPTT 256

Query: 85  HFIYATTARNRNNFKS----------------VLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            F+  T A++R                     + + ++A     +     +   ++ G E
Sbjct: 257 TFLENTIAQHRARGDPCSLEMYAAITMPMDAIMRSGRQAKGETEKGGEPMRRRLLLLGNE 316

Query: 129 RWGLTNEEIALSNAIISFPV 148
             GL  E + L +  +  P 
Sbjct: 317 DRGLPPEVVRLCSHAVHIPS 336


>gi|297745670|emb|CBI40924.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score = 38.1 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            + + ++ GRE+ G+  + I + +A I  P   +  SLN+  +  + +WE     
Sbjct: 1147 KKIVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1200


>gi|221052955|ref|XP_002257852.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193807684|emb|CAQ38388.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 320

 Score = 38.1 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 16/79 (20%)

Query: 104 PKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNAIISF--------PV-----N 149
           P +    L   ++   + + II G E  GL+ E +  S+  I          P      N
Sbjct: 235 PNDRLQELANVQMNKNEKIFIILGNETKGLSKEILEKSDICIYINGHRTEVAPTPDLNHN 294

Query: 150 PLFP--SLNISQAVLLMVW 166
             F   SLN++ A  +++ 
Sbjct: 295 GEFTLDSLNVNNACAILLH 313


>gi|116669208|ref|YP_830141.1| dehydrogenase [Arthrobacter sp. FB24]
 gi|116609317|gb|ABK02041.1| dehydrogenase [Arthrobacter sp. FB24]
          Length = 342

 Score = 38.1 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 29  GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
           GMVA  +  F L +L+LV   D  P+++A + +   +        F+N  +A+AD   + 
Sbjct: 168 GMVATLLRTFPLQRLQLV---DVDPAKRAFADALGVE--------FANPNDALADCDIVI 216

Query: 89  ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             +A      +S+    +   V+    ++ + V I  G +
Sbjct: 217 HCSASQEGLERSLQLVGDEGDVIEMSWYADRKVTIPLGED 256


>gi|269975955|ref|ZP_06182959.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|306817283|ref|ZP_07451029.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|269935783|gb|EEZ92313.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|304649963|gb|EFM47242.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 222

 Score = 38.1 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%)

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 E     +   +IFG E  G+T     + + +I         SLN+  A  + +W
Sbjct: 152 PGAENLESCELPRRCLMIFGEESSGITPATQEILDRLIQIAQYGSTRSLNVGHAAAISMW 211

Query: 167 ECMEN 171
             +  
Sbjct: 212 AWVRA 216


>gi|91225285|ref|ZP_01260453.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269968767|ref|ZP_06182757.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91189924|gb|EAS76196.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269826612|gb|EEZ80956.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 244

 Score = 38.1 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 9   QNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           +  AKG +I L       N+G + R    + +  +          + K  S++  +    
Sbjct: 96  EPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNPKTISATMGS---- 151

Query: 69  DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                F  ++ ++ DL       +   +    V         +++  F+ + + ++ G E
Sbjct: 152 -----FGRVQVSLVDLP------SYLEHAKLPVYGAFLEGESVHKTDFAAEGI-LLMGSE 199

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
             G+           I+ P      SLN++ A  +++      
Sbjct: 200 SHGVREAAAKFVTDKITIPAFGGAESLNVAMATGIILDNMRRQ 242


>gi|260911434|ref|ZP_05918024.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634433|gb|EEX52533.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 257

 Score = 38.1 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 36/162 (22%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSN---- 76
           Q   N+G + R    F +    +V   D     + K   ++  +   I  V+V       
Sbjct: 115 QDPGNLGTIVRLADWFGIR--HVVCSLDTADVYNPKVVQATMGS---IARVKVSYTPLEP 169

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG---IIFGRERWGLT 133
           L +A+                      P    ++  + I+  Q      I+ G E  GL+
Sbjct: 170 LLDAL------------------PPSFPVYGTLLDGDNIYGQQLCAHGIIVMGNEGKGLS 211

Query: 134 NEEIALSNAIISFP--VNPLFP--SLNISQAVLLMVWECMEN 171
                  N  +  P          SLN++ A  ++  E    
Sbjct: 212 TSVRQRVNHKLLIPHFATGEQRAESLNVAIATAIVCAEFRRQ 253


>gi|281211833|gb|EFA85995.1| TAR RNA loop binding protein [Polysphondylium pallidum PN500]
          Length = 1614

 Score = 38.1 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
            +   ++ G+E+ G+  E I L +  I  P   +  SLN+  +  +++WE  +  I + 
Sbjct: 1556 EKAVLLLGKEKEGIPTEYINLLDKCIEIPQLGIIRSLNVHVSGSILMWEYTKQMINNK 1613


>gi|254388527|ref|ZP_05003761.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326442462|ref|ZP_08217196.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197702248|gb|EDY48060.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 316

 Score = 38.1 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 53/194 (27%), Gaps = 61/194 (31%)

Query: 5   APQLQNSAKGPVII-LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           A    +  + P+I+ L       N+G V R++  F      +V      P  +A   +A 
Sbjct: 157 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFG-GHGVVV------PERRAAGMTAG 209

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A                         T AR          P   A  L   + S Q  G+
Sbjct: 210 AW-------------------KTSAGTAAR---------TPVARATNLTRALESYQKAGL 241

Query: 124 IF------GRERWG-------------------LTNEEIALSNAIISFPVNPLFPSLNIS 158
                   G    G                   L+       + ++  P+     SLN  
Sbjct: 242 TVVGLAADGEHEVGDLEALGGPVVVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAG 301

Query: 159 QAVLLMVWECMENS 172
            A  ++++E     
Sbjct: 302 VAAGVVLYEAARRR 315


>gi|148253796|ref|YP_001238381.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146405969|gb|ABQ34475.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 158

 Score = 38.1 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV--RVF 74
           I L  P + +N G + R      L    ++ P     S++    +      +D +  R  
Sbjct: 3   IALYQPDIPQNTGTILRLCACLGLAA-HIIEPAGFAVSDRQFRRA--GMDYLDHLAWRRH 59

Query: 75  SN---LKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
            +    ++  A      +  TT        S L     A  +           ++ GRE 
Sbjct: 60  DSWSAFEDWRAAQGHRLLLFTT----KAATSYLDFSYKADDI-----------LLLGRES 104

Query: 130 WGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            G+ +    +++A +  P+ P   SLN++ 
Sbjct: 105 AGVPDTVAEVADARLRIPLRPGLRSLNVAM 134


>gi|83319453|ref|YP_424436.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283339|gb|ABC01271.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 255

 Score = 38.1 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 26/55 (47%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +  S     +I G E  G++ E + L +  I+  +     S+N + A  +++++ 
Sbjct: 197 KFDSDDKYALIIGNEGKGISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQI 251


>gi|134103609|ref|YP_001109270.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004854|ref|ZP_06562827.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916232|emb|CAM06345.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 215

 Score = 38.1 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 15/149 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    F    + +V  R  W    A  +          V    +L+   A
Sbjct: 74  QHDHNIGTVVRTANAFAARAVHIVG-RRRWNRRGAMVT-----DRYQHVHHHPDLESLRA 127

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                    AR  +     +   + +  + ER    +   ++FG+E  GL +E    ++ 
Sbjct: 128 --------YAREHSLAVVAVDNTQGSRPI-ERTALPERCVLLFGQEGPGLRDESREGADL 178

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++S        S+N   A  +++   +E 
Sbjct: 179 VVSIAQFGSTRSINAGVAAGIVMHTWIEQ 207


>gi|209518723|ref|ZP_03267539.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160]
 gi|209500837|gb|EEA00877.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160]
          Length = 289

 Score = 38.1 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 52/168 (30%), Gaps = 18/168 (10%)

Query: 7   QLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANAD 65
            L        ++L   Q   N+G + R+     +       P   +  S K   S   A 
Sbjct: 133 PLPERIAENCLVLDGVQDAGNVGSILRSAAAAGIQH-VFCAPGTAYAWSSKVLRSGMGAH 191

Query: 66  CVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            ++   ++  +++ +A+                   ++                  +  +
Sbjct: 192 FLL---QIHEDVEADAL------------IERLAVPIVITDSHGAEAIYDCDLSGPLAWV 236

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           FG E  G++       +  ++ P      SLN++ A  + V+E     
Sbjct: 237 FGNEGAGVSQVWRDAVSLRVTIPQPGGMESLNVAAAAAVCVFEQCRQQ 284


>gi|317507290|ref|ZP_07965033.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254419|gb|EFV13746.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 220

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 15/162 (9%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     NIG + R    F    + +V  R  W    A  +          V   + 
Sbjct: 72  VVIENLAHDANIGTIVRTANAFLAEAVHIVG-RRRWNRRGAMVT-----DRYQHVHHHAT 125

Query: 77  LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEE 136
             +A AD        A  R      +     A  + E     +   ++FG+E  GL+ E 
Sbjct: 126 -AQAFADY-------AAGRGLAVIAVDNTPGAEPM-ETFALPRRCALLFGQEGTGLSPEL 176

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
              + + ++        S+N+  A  + +   +      +++
Sbjct: 177 RGTAQSALAIAQFGSTRSINVGVAAGIAMHAWVRQHADLAQR 218


>gi|313672865|ref|YP_004050976.1| aspartate carbamoyltransferase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939621|gb|ADR18813.1| aspartate carbamoyltransferase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 311

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 15/61 (24%)

Query: 31  VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           VAR    AM    +  LRL  P+   P           D +    +V ++++EA+ D   
Sbjct: 169 VARSNAWAMKKLGI-DLRLYGPKTMIPR----------DYLPFGCKVCNSMEEALEDCDV 217

Query: 87  I 87
           +
Sbjct: 218 V 218


>gi|20094038|ref|NP_613885.1| hypothetical protein MK0600 [Methanopyrus kandleri AV19]
 gi|19887015|gb|AAM01815.1| Uncharacterized protein conserved in archaea [Methanopyrus kandleri
           AV19]
          Length = 157

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 36/155 (23%)

Query: 32  ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----------FSNLKEA 80
           AR +  F   +  +           +R+  + A   +   +            F +L+EA
Sbjct: 21  ARTVAGFGAKRFVI-----------SRALGSAAQEGVPKAQRICLEAGVELLFFQDLEEA 69

Query: 81  IADL--HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           +  L     Y          K +         + E I   + V  +FG  R GLT +E+ 
Sbjct: 70  LKALSPDVTYMAEDAEHGGAKPLDF-----DAVVEEIEQEREVCFVFGSARPGLTKQELE 124

Query: 139 LSNAIISFPVNPLFPSLNISQ--AVLLMVWECMEN 171
           L +  +           N+ +  AV +++ E  + 
Sbjct: 125 LGDEAVYVGTER-----NVGEVGAVAILLHELRKR 154


>gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771]
          Length = 254

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   FN     ++  +   P+E    +  ++ A  +I  +++ +
Sbjct: 109 VLDQVTDPHNVGAIMRSAVAFNAG--AVITTQRHSPTESGVLAKSASGALELIPYIQI-T 165

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +  +T    +   + L          E  FSG  V ++ G E  GL  +
Sbjct: 166 NLADALGELHKLGFSTIGLDSEGPAPL----------EGTFSGDKVALVLGSEGKGLRQK 215

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                 A+    +     SLN+S 
Sbjct: 216 TRETVTALARLDMPGAIKSLNVSN 239


>gi|85714273|ref|ZP_01045261.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A]
 gi|85698720|gb|EAQ36589.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A]
          Length = 156

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 25/148 (16%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVF- 74
            + L  P + +N G + R     ++ +  ++ P     S++    +      +D V +  
Sbjct: 2   RVALFQPDIPQNTGTILRLCACLDV-EAHIIEPAGFPVSDRHFRRA--GMDYLDEVAIVR 58

Query: 75  ----SNLKE--AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
                  ++  A      +  TT   R               L+ R        ++FGRE
Sbjct: 59  HDSWQKFQQWRAADGGRLVLFTTKGAR-------------PYLDHRFADTDI--LLFGRE 103

Query: 129 RWGLTNEEIALSNAIISFPVNPLFPSLN 156
             G+ +     ++A +  PV P   SLN
Sbjct: 104 SAGVPDAVADAADATLVIPVRPGLRSLN 131


>gi|323451439|gb|EGB07316.1| hypothetical protein AURANDRAFT_71849 [Aureococcus anophagefferens]
          Length = 3487

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 10/105 (9%)

Query: 63  NADCVIDSVRVFSNLK-EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
            A   ID+ +   N + ++ AD        +  R      +   E      E        
Sbjct: 763 GATDAIDAWKTVPNFRYDSFADFAK-----SSPRGAAWVAV---EMGGEPLETFVHPDRA 814

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
               G E  G+  + +     ++S P      S N++ A  L+++
Sbjct: 815 VYFLGAEDHGVPKDVLRACRHVVSLPAARS-ASYNVAVAGALVMY 858


>gi|308274700|emb|CBX31299.1| Uncharacterized protein TM_1570 [uncultured Desulfobacterium sp.]
          Length = 189

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 27/153 (17%)

Query: 32  ARAMWNFNLTQLRLVNPRDG---WPSEKARSSSANADCVIDSVR--------VFSNLKEA 80
           ARA   + +    +V P D       +     ++ A  V++  R        + +++K+ 
Sbjct: 39  ARAAKTYGVKNFYVVTPLDDQKELAQQIISHWTSGAGAVLNPKRCEALELIYIKNSIKDV 98

Query: 81  IADLHF-------IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
           + ++ F          T+A++  ++ S            E +       IIFG   WGL 
Sbjct: 99  LEEIGFKEKSYPKTVVTSAKDSTDYISFF-------KFKEMLKDESPYLIIFGT-GWGLA 150

Query: 134 NEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
            E I+ ++  +     N  +  L++  A  +++
Sbjct: 151 EEIISTADYKLEPIKGNADYNHLSVRSACSIVL 183


>gi|15236590|ref|NP_193496.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
            thaliana]
 gi|332658520|gb|AEE83920.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
            thaliana]
          Length = 1850

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +   ++ GRE+ G+  + I + +A I  P   +  SLN+  +  + +WE     
Sbjct: 1795 KKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 1848


>gi|70993278|ref|XP_751486.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           Af293]
 gi|66849120|gb|EAL89448.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           Af293]
 gi|159125580|gb|EDP50697.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           A1163]
          Length = 484

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 72/193 (37%), Gaps = 21/193 (10%)

Query: 8   LQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           L   ++ PV++L+       N+G + R+ +   +  +          S     +SA A  
Sbjct: 293 LPGQSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAAE 352

Query: 67  VIDSVRV---FSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVG 122
            +  ++V      ++++ A+    +A  A           P     I L     +     
Sbjct: 353 NMPLIKVSNEVDFIQQSKANGWRFFAADA----PLPGTRYPDTTGDIDLTRNAVTQAPSV 408

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVN------------PLFPSLNISQAVLLMVWECME 170
           I+ G E  GL+    + +++I+S P                  SLN+S A  +++ + + 
Sbjct: 409 IMLGSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAILMEQFLR 468

Query: 171 NSIVSSEKNVKEQ 183
             I+ +E   ++ 
Sbjct: 469 IPILITEAPPRKA 481


>gi|290893297|ref|ZP_06556283.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290557105|gb|EFD90633.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 252

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 19  LVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID--SVRVFS 75
           LVD  Q   N+G + R         + L        + K   S+  +   I      +F 
Sbjct: 111 LVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQADLFD 170

Query: 76  ---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              NL+E    +  I A           VL   + A  LN+       + ++ G E  G+
Sbjct: 171 WIANLEE--EGVPVIGA-----------VLD--DQAKSLNDMTKRD-TLALMVGNEGNGI 214

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           + E     +  +   +     SLN++ A  ++++   +
Sbjct: 215 SPELQDRLSEKVYITIYGDSESLNVAVAAGILLYGLRK 252


>gi|260220097|emb|CBA27295.1| Aspartate carbamoyltransferase [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 320

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 31  VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           VAR    A+      ++R+V P+   PS+ A+            VRV   L+E I D   
Sbjct: 182 VARSDIHALTTLGCAEVRVVGPKTLVPSDMAQM----------GVRVCHTLEEGIKDCDV 231

Query: 87  IY 88
           I 
Sbjct: 232 II 233


>gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
           15579]
 gi|187775605|gb|EDU39407.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
           15579]
          Length = 259

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           I  G E  G++ +  +LS+  +  P+     SLN++ A  +M +E +  
Sbjct: 208 IAVGNEGNGISEDLNSLSDIKVKIPMPGAAESLNVAVACSIMTFERIRQ 256


>gi|42523135|ref|NP_968515.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39575340|emb|CAE79508.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 251

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 25/164 (15%)

Query: 5   APQLQNSAKGPVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
           AP     A+G  +I   P     N+G +AR+   F  +++ L          KA  +SA 
Sbjct: 104 APLTTAKAEGLEVI--SPLGDPSNLGALARSSLAFGASKMILTEESCSPYHPKAIKASAG 161

Query: 64  ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
           A   +   ++     + +++   IYA                +            +NV I
Sbjct: 162 ALLKLPLFKI-GKFADFVSNNDQIYAL---------------DMKGESVANFKWPKNVRI 205

Query: 124 IFGRERWGLT-NEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
             G E  G +  + +   +            SLN + A  + ++
Sbjct: 206 ALGEEGPGFSGIKNLQRLSV-----ATQSVESLNATVAGSIALY 244


>gi|328950774|ref|YP_004368109.1| Malate dehydrogenase [Marinithermus hydrothermalis DSM 14884]
 gi|328451098|gb|AEB11999.1| Malate dehydrogenase [Marinithermus hydrothermalis DSM 14884]
          Length = 317

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 24  LGENIGMVARAM--WNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN--LKE 79
              N+G    AM      L  + +V+  +G P  KA   S     V++ V +       E
Sbjct: 13  GAGNVGATL-AMRIAEAGLADVVMVDIVEGMPQGKALDLSEARPVVLNDVTIVGTNNYAE 71

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
            IA    +  T+   R    S     E    +  ++  
Sbjct: 72  -IAGSDIVVTTSGVPRKPGMSRDDLIETNGKIARQVAE 108


>gi|312137456|ref|YP_004004793.1| v-type atpase 116 kda subunit [Methanothermus fervidus DSM 2088]
 gi|311225175|gb|ADP78031.1| V-type ATPase 116 kDa subunit [Methanothermus fervidus DSM 2088]
          Length = 657

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 206 RGYFRPVEKKKKMLDDLYSIFIRPELMREEVFLL--RGIVSTLDKFSRQSSRRNNVLLQK 263
             +F+  E K+ M+D L +I   P   + EV  L  RGI+S  +K   +   +   + +K
Sbjct: 74  LDFFKIAEPKRGMMDTLKNIINPPIPKKREVKDLSTRGIISKAEKVLNEVESKTKNIEKK 133

Query: 264 TEK 266
            ++
Sbjct: 134 LDE 136


>gi|237800273|ref|ZP_04588734.1| hypothetical protein POR16_15693 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023130|gb|EGI03187.1| hypothetical protein POR16_15693 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 136

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E A  L E     + +  IFG E   L  +       ++  P       +N++  V +++
Sbjct: 54  EGARALPEYTHPDRAL-YIFGPEDGSLDQDIRDWCEDVVYIPTEGC---MNLAATVNVVL 109

Query: 166 WECMENSI--VSSEKNVKEQNTPATKG 190
           ++ M   I   S  +  +E+  P++  
Sbjct: 110 YDRMAKGINTRSGPQFGREKIDPSSDH 136


>gi|157362991|ref|YP_001469758.1| hypothetical protein Tlet_0124 [Thermotoga lettingae TMO]
 gi|157313595|gb|ABV32694.1| conserved hypothetical protein [Thermotoga lettingae TMO]
          Length = 189

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 90  TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS-FPV 148
           T+A+ R N  +    +E          + + V I+FG   WGL NE + + +  +     
Sbjct: 111 TSAKKRPNTLTYAQAREFIKK------TDRPVLILFGT-SWGLPNEVLQICDYALEPIRA 163

Query: 149 NPLFPSLNISQAVLLM 164
           +  +  L++  A  ++
Sbjct: 164 DSDYNHLSVRAAAAII 179


>gi|258573751|ref|XP_002541057.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901323|gb|EEP75724.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 582

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 57/204 (27%), Gaps = 55/204 (26%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA---- 80
             N+G + R+ + F                  A + S+     + +V + ++   A    
Sbjct: 386 PGNLGAIIRSAYFFG---------------ADAIAFSSRNSAPLSAVTIKASAGAAENMP 430

Query: 81  ---IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG------------------- 118
              I D      T+   R N     A +  A   ++                        
Sbjct: 431 LISIHDPATFIDTS---RGNGWRFFAAEPPASTFDDSQAQVDTMLTKTPILSPHNLSAEP 487

Query: 119 --QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP---------SLNISQAVLLMVWE 167
                 ++ G E +GL+      ++A ++ P               SLN+S A  L+  E
Sbjct: 488 RKSPCVLMLGSEGYGLSKYLKRKADAFVAIPGAQAAGLSDDPAGVDSLNVSVASALLCQE 547

Query: 168 CMENSIVSSEKNVKEQNTPATKGE 191
            +             +    T  E
Sbjct: 548 FLREPSPGQNYPSPIRPKSPTASE 571


>gi|289613400|emb|CBI59653.1| unnamed protein product [Sordaria macrospora]
          Length = 593

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 10/179 (5%)

Query: 15  PVIILVDPQL-GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
           P++++VD  L   N+G + R++     T + +        +  A  +SA A   + ++  
Sbjct: 412 PLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRESASMTPVALKASAGASESL-ALFS 470

Query: 74  FSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRER 129
             +L + + D       +YA   R   +           I   + + +   + ++ G E 
Sbjct: 471 VGHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLRTNPCI-LLLGSEG 529

Query: 130 WGLTNEEIALSNAIISFP-VNPL--FPSLNISQAVLLMVWECMENSIVSSEKNVKEQNT 185
            GL  +  + ++  ++ P ++      SLN+S A  L+    M+  + S  +  K Q  
Sbjct: 530 EGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGLLTSAFMKGQVKSEFEQFKVQEE 588


>gi|237744034|ref|ZP_04574515.1| tRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229431263|gb|EEO41475.1| tRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 187

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 73  VFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V  ++++ + ++         I  T+AR  NN  S          L+++IF      ++ 
Sbjct: 87  VTESIEDVVKEIEKIEGQKPLIITTSARTFNNSISY-------KDLSKQIFEDDKPYLLL 139

Query: 126 GRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
               WGLT+E +++S+ I+     N  +  L++  AV +++
Sbjct: 140 FGTGWGLTDEVMSMSDYILEPIRANSKYNHLSVRAAVAIIL 180


>gi|159472665|ref|XP_001694465.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276689|gb|EDP02460.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 233

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS-GQNVGIIFGRERW 130
           R F    E +A      A  A  R  + + LA  ++AI+L          + I+ GRE  
Sbjct: 34  RTFPTTAECVA------ALRADGREIWATDLA--QSAILLEGTAIQLPPRLAIVMGREAD 85

Query: 131 GLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
           G++ E +  +N      +  P+     S N+S A  +++         +      E+   
Sbjct: 86  GVSAEMLEAANRCTGLRVCLPMYGYNDSFNLSVATAMVLHHLFLCCPEARGDLTPERKRA 145


>gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0411]
 gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0411]
          Length = 258

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +   +I G E  G++ E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVEIYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|154497125|ref|ZP_02035821.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
           29799]
 gi|150273524|gb|EDN00652.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
           29799]
          Length = 258

 Score = 37.7 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 20/147 (13%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
             +   + P+I++  +     N+G V R         + +   R    +     +SA A 
Sbjct: 101 AAREKGEPPLIVVCDELSDPHNLGAVIRTAECAGAHGVIIPKRRSAGLTAVVAKTSAGAV 160

Query: 66  CVIDSVRVFSNLKEAIADLH----FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
             +   RV  NL   + +L     +I+ T A   +   ++                    
Sbjct: 161 SYVPVARV-PNLTALLKELKDEGLWIFGTAA---DGNTTLYDADLKGP-----------A 205

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPV 148
            I+ G E  G+        +  +S P+
Sbjct: 206 AIVIGSEGDGMGRLVSEQCDFKVSIPM 232


>gi|39974237|ref|XP_368509.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
 gi|145018333|gb|EDK02612.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
          Length = 616

 Score = 37.7 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 15/150 (10%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI------DSVRVFSNLK 78
             N+G + R      ++ + +        +  A  ++A A   +      +      N K
Sbjct: 445 PGNLGNILRTASFLGVSAVVISQRNSATLTPVALKAAAGASETLPLFACDNPASFLHNSK 504

Query: 79  EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
           E+   ++   A +   + + + V   ++   +  +         ++ G E  GL      
Sbjct: 505 ESGWKIYAAVAPSRSRKKSEQDVYDIEDLDPLATD------PCVLVVGSEGEGLPTMIKT 558

Query: 139 LSNAIISFPVNPLFP---SLNISQAVLLMV 165
            S+  ++ P +       SLN+S A  L+ 
Sbjct: 559 KSHHAVTIPNSSGAHTIDSLNVSVAAGLLC 588


>gi|50310205|ref|XP_455122.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644258|emb|CAG97829.1| KLLA0F00946p [Kluyveromyces lactis]
          Length = 400

 Score = 37.7 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 21/168 (12%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVID 69
           N      I L +     N+G + R+ +      + L +      S      S+    ++ 
Sbjct: 235 NKKNPLGIYLDEVVDPHNVGAIIRSAYFLGADFMVLSHKNCAPLSPVVSKVSSGTMELLP 294

Query: 70  SVRVFSN------LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
              +F+        +++  D  +++ T+  + +   + L   E + +LNE       V +
Sbjct: 295 ---IFTTAKPLQFFEKSKQDGGWMFVTSHMSISQKGNHLTMNELSGMLNEL-----PVVL 346

Query: 124 IFGRERWGLTNEEIALSNAIISFPVNPL-------FPSLNISQAVLLM 164
           + G E  G+    +  S+  +  P             SLN+S A  L+
Sbjct: 347 VVGNEGNGVRTNLLNRSDFTVEIPFGRDPTEGRNTIDSLNVSVATALL 394


>gi|262373126|ref|ZP_06066405.1| SpoU rRNA methylase [Acinetobacter junii SH205]
 gi|262313151|gb|EEY94236.1| SpoU rRNA methylase [Acinetobacter junii SH205]
          Length = 258

 Score = 37.7 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           Q    I G E  G+++  +  + A ++ P      SLN++ A  +  +E +   
Sbjct: 205 QACVWILGNEGQGVSDYALEHAEA-VTIPQPGGQESLNVAIAGSICFFEMVRQR 257


>gi|116748593|ref|YP_845280.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB]
 gi|193806435|sp|A0LHE3|RSMG2_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase G 2;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase 2; Short=16S rRNA m7G
           methyltransferase 2
 gi|116697657|gb|ABK16845.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB]
          Length = 498

 Score = 37.7 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 24/141 (17%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFS 75
           +LV  Q  EN+G V R+   F   Q+ L+         KA  +S  A     + +     
Sbjct: 354 VLVPFQDPENVGAVIRSAAAFGAVQVILLRESAHPFHPKALRASGGAVLRMKLRNGPPLE 413

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL E +     I   +A  R+  + V                    G++ G E  GL + 
Sbjct: 414 NLPENLP----ILPLSAEGRDITRHVFP---------------AAFGLLPGLEGPGLPDN 454

Query: 136 EIALSNAIISFPVNPLFPSLN 156
               S    + P+     SLN
Sbjct: 455 WRRKS---FAIPICKDVESLN 472


>gi|321461680|gb|EFX72710.1| hypothetical protein DAPPUDRAFT_58639 [Daphnia pulex]
          Length = 177

 Score = 37.7 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 21/153 (13%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-----FSNLKEA- 80
           N+G + R      +    L +       +   S S +A+  I+ + +        +K+  
Sbjct: 34  NLGGLCRTCEVLGVRDFVL-SSLRVTEEKDFVSLSVSAEKWINVLEIKPFQLVEYVKQLK 92

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +     + A    +         PK                 +I G E+ G+  E I   
Sbjct: 93  LEGYTVVGAEQTASSQPLNHFTFPK--------------KSALILGHEKEGIPVELIQHL 138

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +  +  P   +  S+N+     + +WE     +
Sbjct: 139 DVCVEVPQEGIIRSMNVHVTGAIFIWEYARQQM 171


>gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4]
 gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4]
          Length = 261

 Score = 37.7 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
            I      G++ G E  G+  E +  +   +  P+     SLN++ A  ++++   +
Sbjct: 202 EIEPQAVYGLVMGNEGNGMAAELLKRTTKNLYIPIVGQAESLNVAVAAGILMFSLTK 258


>gi|114707436|ref|ZP_01440332.1| hypothetical protein FP2506_11222 [Fulvimarina pelagi HTCC2506]
 gi|114536995|gb|EAU40123.1| hypothetical protein FP2506_11222 [Fulvimarina pelagi HTCC2506]
          Length = 1297

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 17/105 (16%)

Query: 46  VNPRDGWPSEKARSSSAN----ADCVIDSVRVF----SNLKEAIADLHFIYATTARN--- 94
           V P +  P     S  A         +D   +          A AD+     T +R+   
Sbjct: 356 VPPDNDLPDPYGGSRQAAFPWRGRMTLDRAEIVSGSADRTATARADIERFVGTASRHDFV 415

Query: 95  ------RNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLT 133
                 R +     + +            G     + G E  GLT
Sbjct: 416 WENDRLRYHGPEEWSYRRMIFHQAHLAERGGASAFVIGSEMRGLT 460


>gi|320031639|gb|EFW13599.1| SpoU rRNA methylase [Coccidioides posadasii str. Silveira]
          Length = 472

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+ + F        + R+  P S     SS+ A   I  + +          
Sbjct: 270 PHNLGAILRSAYYFG-ADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLISIHDT------- 321

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNER----------IFSGQNVGIIFGRERWGLT 133
           + FI A + RN   F +   P   A     +                  ++ G E  GL+
Sbjct: 322 VSFIDA-SRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLGNEGDGLS 380

Query: 134 NEEIALSNAIISFP-----VNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E  + ++A +        +     SLN++ A  ++    M  S V S  N      P
Sbjct: 381 KELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILCEAFMRGSGVRSRANATSSFLP 438


>gi|296112629|ref|YP_003626567.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
 gi|295920323|gb|ADG60674.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
          Length = 258

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 25/168 (14%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVI 68
            +     +IL   Q   NIG + R      +    + +P      S K   +   A    
Sbjct: 107 PTISSDCLILDGLQDLGNIGTLLRTASAVGIQT-VITSPNTAHLWSPKCLRAGMGAHF-- 163

Query: 69  DSVRVFSNLK--EAIADLHF-IYATTA-RNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
            S+ ++ ++   E +  L   +YAT++  N+  +   L                  +  +
Sbjct: 164 -SMSIYEHIAVNEILQKLKTPLYATSSHTNKVIYDHDLT---------------GPIAWV 207

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            G E  G+ +E +  +   I+ P      SLN+  A  +  +E +   
Sbjct: 208 LGHEGQGVRDEFLNNA-IPIALPQPGGQESLNVGIAGSVCFYEMLRQR 254


>gi|118616019|ref|YP_904351.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118568129|gb|ABL02880.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 218

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 15/148 (10%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              NIG V R    F +  + +V  R  W    A  +          +R   ++ E +  
Sbjct: 78  HDANIGSVVRTANAFAVDTVHIVG-RRRWNRRGAMVT-----DRYQRLRHHDSIAELLE- 130

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F               +     A  L E     ++  ++FGRE  G+T++    +   
Sbjct: 131 --FAVGA-----GLTVVAVDNVPGAARLEETTLP-RDCLLVFGREGPGITDDTRVGAVVT 182

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        S+N   A  + +   +  
Sbjct: 183 VSIAQFGSTRSINAGVAAGIAMHAWIRQ 210


>gi|303312903|ref|XP_003066463.1| RNA methyltransferase, TrmH family, group 3 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106125|gb|EER24318.1| RNA methyltransferase, TrmH family, group 3 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 495

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+ + F        + R+  P S     SS+ A   I  + +          
Sbjct: 293 PHNLGAILRSAYYFG-ADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLISIHDT------- 344

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNER----------IFSGQNVGIIFGRERWGLT 133
           + FI A + RN   F +   P   A     +                  ++ G E  GL+
Sbjct: 345 VSFIDA-SRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLGNEGDGLS 403

Query: 134 NEEIALSNAIISFP-----VNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E  + ++A +        +     SLN++ A  ++    M  S V S  N      P
Sbjct: 404 KELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILCEAFMRGSGVRSRANATSSFLP 461


>gi|256070798|ref|XP_002571729.1| rna methyltransferase-related [Schistosoma mansoni]
 gi|238656876|emb|CAZ27959.1| rna methyltransferase-related [Schistosoma mansoni]
          Length = 407

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAI----ISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            + ++ G E  G++ E   L +      +  P      SLN+  A  +++ E     + S
Sbjct: 348 RLAVVIGSEAHGVSPEAFHLVHLTGGSRLVIPSADRISSLNVLSAASVLLGEIQRQFLCS 407


>gi|323351009|ref|ZP_08086666.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
 gi|322122733|gb|EFX94442.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
          Length = 246

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 27/55 (49%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            + S ++  ++ G E  G++ E    ++ ++   +     SLN++ A  ++++  
Sbjct: 191 EVVSKESFVLVMGNEGQGISPEMTVAADILVHISMKGQAESLNVAVAAGILIFHL 245


>gi|229493739|ref|ZP_04387521.1| PHP domain protein [Rhodococcus erythropolis SK121]
 gi|229319339|gb|EEN85178.1| PHP domain protein [Rhodococcus erythropolis SK121]
          Length = 284

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 17/106 (16%)

Query: 33  RAMWNF----NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
           RAM        L     V+P              +    +    V S++ EA +DL    
Sbjct: 107 RAMTTMMARDGLP----VDPDQILADAGPSVGRPHVAAALMRAGVVSSISEAFSDL---- 158

Query: 89  ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW--GL 132
             ++R R +      P E A+ L     +G    +  GR R   GL
Sbjct: 159 -LSSRGRYDVPKYDTPLEYAVELV--AAAGGVTVLAHGRARSRGGL 201


>gi|309808741|ref|ZP_07702627.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308167977|gb|EFO70109.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 94

 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 123 IIFGRERWGLTNEEI-ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
            +FG+E  GL    +       +  P++    + N++ +V ++++E +   
Sbjct: 26  FVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAIVLFEALRQQ 76


>gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
           hominis C80]
          Length = 246

 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 19/167 (11%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P+   S    V++L   Q   N+G + R      +  + ++        +     ++ 
Sbjct: 95  EKPKHNISKAKQVLLLDRIQDPGNLGTLIRTADAAGI-DMVVMEKGTADAYQDKVMRASQ 153

Query: 64  ADCVIDSVRVFSN-LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                  + + +  L + I      +Y T   N               V  + I S    
Sbjct: 154 GSVF--HIPIVTTELNKFIEQFDGPVYGTALEN--------------AVSYKNIESQDTF 197

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++ G E  G+  E +A ++  +  P+     SLN++ A  ++++  
Sbjct: 198 ALLLGNEGEGVNKELLAHTSQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|254302689|ref|ZP_04970047.1| hypothetical protein FNP_0317 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322881|gb|EDK88131.1| hypothetical protein FNP_0317 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 187

 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 73  VFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V  +++E + ++         I  T+AR  +N  S          L+++IF      ++ 
Sbjct: 87  VAESIEEVVKEIERIEGQKPLIITTSARIFDNSISY-------KNLSKQIFEDDKPYLLL 139

Query: 126 GRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
               WGLT+E + +S+ I+     N  +  L++  AV +++
Sbjct: 140 FGTGWGLTDEVMNMSDYILEPIRANSKYNHLSVRAAVAIIL 180


>gi|67605967|ref|XP_666721.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657764|gb|EAL36488.1| hypothetical protein Chro.10198 [Cryptosporidium hominis]
          Length = 740

 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +   +I G+E+ G+ +E +++ +  I  P   +  SLN+  +  + ++E     + S
Sbjct: 680 EKSVLILGKEKEGIPSEIVSIVDQCIEIPQYGIIRSLNVHVSASIFIYEYTTQFMQS 736


>gi|66362096|ref|XP_628012.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT
            methylase [Cryptosporidium parvum Iowa II]
 gi|46227488|gb|EAK88423.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT
            methylase [Cryptosporidium parvum Iowa II]
          Length = 1808

 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
            +   +I G+E+ G+ +E +++ +  I  P   +  SLN+  +  + ++E     + S
Sbjct: 1748 EKSVLILGKEKEGIPSEIVSIVDQCIEIPQYGIIRSLNVHVSASIFIYEYTTQFMQS 1804


>gi|325290409|ref|YP_004266590.1| Protein of unknown function DUF2168 [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965810|gb|ADY56589.1| Protein of unknown function DUF2168 [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 186

 Score = 37.7 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 41/162 (25%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSSA----------NADCVID------SVRVF 74
           +AR    + L +  +V      P+    + +            A+   D       VR+ 
Sbjct: 33  IARCSATYGLQRYYVV-----HPAPAQHALAQRIMGFWREGFGAEYNPDRYEAFSRVRLV 87

Query: 75  SNLKEAIADL--------HFIYATTARNRNNFKSVLAPKEAAIV-LNERIFSGQNVGIIF 125
           +++++A++D+          + AT AR        L P   +   + ++I     V ++ 
Sbjct: 88  ASVEDALSDIAREQEGKRVHVIATDAR--------LYPDAVSYESMRKKIEETPAVFLLL 139

Query: 126 GRERWGLTNEEIALSNAIISFPVN--PLFPSLNISQAVLLMV 165
               WGL  E +  S+ I+  PV     +  L++  A  +++
Sbjct: 140 FGTGWGLLKEVVQSSDYILQ-PVYGPGEYNHLSVRSAAAVIL 180


>gi|163804067|ref|ZP_02197865.1| predicted rRNA methylase [Vibrio sp. AND4]
 gi|159172124|gb|EDP57062.1| predicted rRNA methylase [Vibrio sp. AND4]
          Length = 65

 Score = 37.7 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
          I L +P++  N G + R   N     L L+ P      EK    +       D  RV
Sbjct: 4  IALYEPEIAPNTGNIIRLCANCG-ANLHLIEPLGFDLEEKKVRRA--GLDYHDLARV 57


>gi|145593291|ref|YP_001157588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145302628|gb|ABP53210.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 207

 Score = 37.7 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 25/161 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK---- 78
           Q   NIG V R    F   ++ +V  R  W    A  +          VR    ++    
Sbjct: 67  QHDLNIGTVVRNANAFLAAEVHIVG-RRRWNRRGAMVT-----DRYQHVRHHETIEGFVA 120

Query: 79  -EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
             A A L  +         +      P E A +        +   ++FG+E  GL++   
Sbjct: 121 WAAGAGLSVV-------GIDNLPGCRPLETAAL-------PRQCVLLFGQEGPGLSDPAR 166

Query: 138 ALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           A  + + S        S+N   A  + +   + +    +  
Sbjct: 167 AACDQLFSIAQYGSTRSINAGVASGIAMHAWIRSYGGPAPA 207


>gi|240137241|ref|YP_002961710.1| putative rRNA methylase [Methylobacterium extorquens AM1]
 gi|240007207|gb|ACS38433.1| putative rRNA methylase [Methylobacterium extorquens AM1]
          Length = 149

 Score = 37.3 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 25/160 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK 78
           L  P + +N G + R      +  + ++ P     S++    S      +D V +  +  
Sbjct: 6   LYQPDIPQNTGTMLRMAACLGIA-VEIIEPAGFDVSDRHLRRS--GLDYLDHVAITRHRS 62

Query: 79  -EAIA------DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            EA         +  + ATT  +    +      +                ++ GRE  G
Sbjct: 63  WEAFEAWRRETGIRLVLATTTGSVPYTQHAFRDGDC---------------LLMGRESAG 107

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     A ++A +  P+ P   SLN++    +M+ E +  
Sbjct: 108 VPEAVHAAADARVVVPIRPGLRSLNVAVCAAMMLGEAIRQ 147


>gi|237742506|ref|ZP_04572987.1| tRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229430154|gb|EEO40366.1| tRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 187

 Score = 37.3 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 19/109 (17%)

Query: 69  DSVRVFSNLKEAIADL-----------HFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +     +++ E+I D+             I  T+AR  +N  S          L+++IF 
Sbjct: 79  EQAFRVTDVAESIEDVIKEIEKIEGQKPLIITTSARTFDNSISY-------KDLSKQIFE 131

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
                ++     WGLT+E +A+S+ I+        +  L++  AV +++
Sbjct: 132 DNKPYLLLFGTGWGLTDEVMAMSDYILEPIRAKSKYNHLSVRAAVAIIL 180


>gi|330801499|ref|XP_003288764.1| hypothetical protein DICPUDRAFT_153035 [Dictyostelium purpureum]
 gi|325081198|gb|EGC34723.1| hypothetical protein DICPUDRAFT_153035 [Dictyostelium purpureum]
          Length = 1628

 Score = 37.3 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +   ++ G+E+ G+  E I L +  I  P   +  SLN+  +  +++WE  +  +
Sbjct: 1572 EKSVLVLGKEKEGIPTEFINLLDKCIEIPQLGVIRSLNVHVSGSILMWEYTKQKL 1626


>gi|300742572|ref|ZP_07072593.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300381757|gb|EFJ78319.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 226

 Score = 37.3 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 15/151 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    F   ++ ++  +  W    A  +          VR    +++   
Sbjct: 86  QHDLNIGTVVRTANAFLAKEVHIIG-KKRWNRRGAMVT-----DRYQHVRHHPTIED--- 136

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F+        +     + P    +   +     +N  ++FG+E  GL+ E  A +  
Sbjct: 137 ---FVAWAQGEGLDIIGIDIFPDSVPLETYDLP---KNCVLVFGQEGPGLSEEIHAAARD 190

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +S        S+N + A  + +   +   +
Sbjct: 191 TLSIEQFGSTRSMNAATAAGIAMHAWVRRHV 221


>gi|118475710|ref|YP_891491.1| RNA methyltransferase [Campylobacter fetus subsp. fetus 82-40]
 gi|261886292|ref|ZP_06010331.1| RNA methyltransferase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|118414936|gb|ABK83356.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 226

 Score = 37.3 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           G+   ++ G E  G+  + +   +  +   +   + SLN+S A  ++
Sbjct: 173 GKKTVLVMGSEGEGIPRKALEKCDENLGINMREGWDSLNVSVAFGIL 219


>gi|110740266|dbj|BAF02030.1| hypothetical protein [Arabidopsis thaliana]
          Length = 253

 Score = 37.3 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +   ++ GRE+ G+  + I + +A I  P   +  SLN+  +  + +WE     
Sbjct: 198 KKTVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQ 251


>gi|307700467|ref|ZP_07637506.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|307614452|gb|EFN93682.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 222

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%)

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 E     +   +IFG E  G+T     + + +I         SLN+  A  + +W
Sbjct: 152 PGAENLESCELPRRCLMIFGEESSGITPATQEILDRLIQITQYGSTRSLNVGHAAAISMW 211

Query: 167 ECMEN 171
             +  
Sbjct: 212 AWVRA 216


>gi|71654167|ref|XP_815708.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880783|gb|EAN93857.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 469

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 88  YATTARNRNNFKSVLAP-----KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
            A T  + +       P     +EA     +       V I+ G E  GL+   ++  + 
Sbjct: 103 VALTPSHPDAQPVQSFPWRKVIREAGERRTDNEDCDGGVEIVLGMEN-GLSENVVSQCDY 161

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            +  P      SL++  A+ + +       +    ++    +  +++G +
Sbjct: 162 CLYIPQYGSIGSLSMISAMAIALHSAASAHVEQCMRDDDRVSPCSSRGHM 211


>gi|289704605|ref|ZP_06501036.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
 gi|289558669|gb|EFD51929.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
          Length = 280

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR----VFSNLKEAIA 82
           N+G V R+        L L          +A   S      +   R    V ++L  A+ 
Sbjct: 140 NLGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAASLP-ALR 198

Query: 83  DLHFIYAT---TARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
              F  A    T R      + + P          + + + + ++ G+E  G+  E +A 
Sbjct: 199 AAGFAVAALEVTERAVGLDSARIEP----------LRTAERLALVLGQEGPGVRPETLAQ 248

Query: 140 SNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++A +  P+     SLN++ A  + +WE    
Sbjct: 249 TDADVVIPMPDGVDSLNVAAAAAVALWELRAR 280


>gi|283457160|ref|YP_003361728.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283133143|dbj|BAI63908.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 253

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 15/157 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R        ++ ++  R  W    A  +          VR    +++   
Sbjct: 112 QHDLNIGTVVRTANAMLAKEVHIIG-RRRWNRRGAMVT-----DRYQHVRHHPTIED--- 162

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F+              + P    +   +     +   ++FG+E  GL+ E  A +  
Sbjct: 163 ---FVAWAQGEGLEIIGIDIFPDSVPLETYDLP---KKCVLVFGQEGPGLSEELHAAARD 216

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            +S        S+N + A  + +   +   +     +
Sbjct: 217 TLSIEQFGSTRSMNAATAAGIAMHAWVRRHVFGQIPS 253


>gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
           35110]
 gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
           35110]
          Length = 272

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 25/166 (15%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN-- 63
            QL+      V+I    Q   N G + R    F    +   +    + + K   +SA   
Sbjct: 118 QQLEEKKTALVLIWDGIQDPGNAGTMIRTAAWFGADAIFASHDSVDFFNPKVVRASAGSL 177

Query: 64  -ADCVIDSVR---VFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
            A  +I S     V   LK+       +YA++     +   V  PK              
Sbjct: 178 FALPLIKSASLGFVVDELKQKR---LTVYASSP-AGTSIWEVSKPK-------------- 219

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVN-PLFPSLNISQAVLLM 164
              +I G E  G+T+     ++  I+ P N     SLN + +  ++
Sbjct: 220 KTALIIGSEANGVTSALFLKTDQQITIPGNSSAVESLNAAISAGIL 265


>gi|146321557|ref|YP_001201268.1| hypothetical protein SSU98_1710 [Streptococcus suis 98HAH33]
 gi|145692363|gb|ABP92868.1| unknown protein [Streptococcus suis 98HAH33]
          Length = 52

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPS 54
          I+L +PQ+ +N G +AR     N + L ++ P  G+P+
Sbjct: 17 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKPM-GFPN 52


>gi|87310712|ref|ZP_01092839.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
           DSM 3645]
 gi|87286469|gb|EAQ78376.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
           DSM 3645]
          Length = 166

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +N  ++ G ER G  ++ + L + ++  PV  +  S N++ A  + ++E    
Sbjct: 110 RNTVLVIGNERQGTPDDVLRLLDDVVEIPVYGMPYSFNVATATCMALYEFCRQ 162


>gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11]
 gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V  + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 185 AVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V  + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 185 AVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
 gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
 gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
 gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
 gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115]
 gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
 gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
 gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
 gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
 gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
 gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
 gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
 gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
 gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
 gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
 gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
 gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315]
 gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721594|dbj|BAF78011.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
 gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
 gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
 gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
 gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115]
 gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
 gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
 gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
 gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
 gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
 gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
 gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
 gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
 gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
 gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
 gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
 gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
 gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21193]
 gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V  + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 185 AVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
 gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V  + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 185 AVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|213029238|ref|ZP_03343685.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 113

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA--DCVIDSVRVFSNLKEAIA 82
             N+  + R      + ++        WP  + R+ ++ A        V+    + +A+A
Sbjct: 13  PHNVSAIIRTADAVGVHEVH-----AIWPGSRMRTMASAAAGSNSWVQVKTHRTIDDAVA 67

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEI 137
            L        + R          + A+   E I   +   I+ G+E+ G+T E +
Sbjct: 68  HL--------KGRGMQILATHLSDKAVDFRE-IDYTRPTCILMGQEKTGITQEAL 113


>gi|49483300|ref|YP_040524.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
 gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V  + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 185 AVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|313675661|ref|YP_004053657.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312942359|gb|ADR21549.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           ++ G E  G+  E I L +  ++ P      SLN + A  ++ 
Sbjct: 197 LVIGNESHGIQKELIPLISEKVTIPKIGQAESLNAAMATAIIC 239


>gi|294899352|ref|XP_002776605.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983]
 gi|239883647|gb|EER08421.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983]
          Length = 211

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 23/122 (18%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLF----PSLNISQAVLLMVWECMENSIV 174
            +   + G E  G+T+++IA  +          +     SLN++ A  ++       S +
Sbjct: 96  GDTCFMLGNEGTGMTDKQIAACDQFTYI---QQYTKATASLNVAIAGSIVSHHFAMASGM 152

Query: 175 S-SEKNVKEQNTPATKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIFIRPELMR 233
             +E+  ++  T   +G+L    ++            P + +++++++   +  R    +
Sbjct: 153 PVAERKGQKFVTDEGRGKLDR-YEH------------PTDYEQQVIEEKRRL--RAAKRQ 197

Query: 234 EE 235
           +E
Sbjct: 198 KE 199


>gi|255079726|ref|XP_002503443.1| predicted protein [Micromonas sp. RCC299]
 gi|226518710|gb|ACO64701.1| predicted protein [Micromonas sp. RCC299]
          Length = 355

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 63  NADCVIDSVRVFSNLKEAIADLHFIYA--TTARNRNNFKS--VLAPKEAAIVLNERIFSG 118
            AD V+ SV++  ++ EA+     + A  +T  +        +   +E   ++     + 
Sbjct: 42  GADAVLGSVQLAPDVAEAVRRRGPVVALESTIISHGMPYPDNLSMAREVEAIVRANGATP 101

Query: 119 QNVGIIFGRERWGLTNEEIAL 139
             + I+ G  R GLT++++A 
Sbjct: 102 ATIAIVDGVPRVGLTDDQLAR 122


>gi|330465613|ref|YP_004403356.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328808584|gb|AEB42756.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 207

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 17/156 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    F   ++ +V  R  W    A  +          VR   ++ + + 
Sbjct: 67  QHDMNIGTVVRNANAFLAAEVHIVG-RRRWNRRGAMVT-----DRYQHVRHHESIDDFV- 119

Query: 83  DLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    A    +   ++           E     +   ++FG+E  GL++   A  +
Sbjct: 120 ---------AWAGQHDLPLVGIDNLPGSRPLESSTLPRRCVLLFGQEGPGLSDAARAACD 170

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            + S        S+N   A  + +   +        
Sbjct: 171 QLFSIAQYGSTRSINAGVASGIAMHAWIRAHAGPPP 206


>gi|302868678|ref|YP_003837315.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|315504850|ref|YP_004083737.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|302571537|gb|ADL47739.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
 gi|315411469|gb|ADU09586.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 269

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 16/148 (10%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFS---NLKEAIA 82
           N+G + R      +    L++P    P   ++   S      +   ++ S    L +  A
Sbjct: 130 NLGAIFRGAAALGV-DAVLLSPTCADPLYRRSVRVSMGEVFAVPYAKLDSWPGGLDQVRA 188

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
               + A T          L P +            +   ++ G E  GLT    A S+ 
Sbjct: 189 AGFTVLAMTPAPDAVPMQRLTPAQR-----------ERAALLLGAEGPGLTAAAQAASDV 237

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECME 170
            +  P+     SLN++ A  +  WE   
Sbjct: 238 RVVIPMRRGVDSLNVAAAAAVAFWELGR 265


>gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
           652]
 gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
           652]
          Length = 296

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   FN     ++  +   P+E    +  ++ A  +I  +++ +
Sbjct: 151 VLDQVTDPHNVGAIMRSAVAFNAG--AVITTQRHSPTESGVLAKSASGALELIPYIQI-T 207

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +  +T    +   + L          E  FSG  + ++ G E  GL  +
Sbjct: 208 NLADALGELHKLGFSTIGLDSEGPAPL----------EGTFSGDKLALVLGSEGKGLRQK 257

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                 A+    +     SLN+S 
Sbjct: 258 TRETVTALARLDMPGAIKSLNVSN 281


>gi|156545324|ref|XP_001605709.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 458

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 119 QNVGIIFGRERWGLTNEE---IALSNAI-ISFPVNPLFPSLNISQAVLLMVWECMENSI 173
             V +I G E  GL+ E    I     I ++ P++    SLN   A+ ++ +E     +
Sbjct: 389 NQVILIVGGETEGLSRESYELIEKKQGIRVNIPLDNGIDSLNAGMALGIIAFEVKRQFL 447


>gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V  + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 185 AVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V  + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 185 AVAYKEVTSSDSFALLLGNEGEGVNPELLAHTTQKLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|322816532|gb|EFZ24804.1| hypothetical protein TCSYLVIO_9048 [Trypanosoma cruzi]
          Length = 469

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLM 164
           +EA     +       V I+ G E  GL+   ++  +  +  P      SL++  A+ + 
Sbjct: 125 REAGERRTDNEDCDGGVEIVLGMEN-GLSENVVSQCDYCLYIPQYGSIGSLSMISAMAIA 183

Query: 165 VWECMENSIVSSEKNVKEQNTPATKGEL 192
           +       +    ++    +  +++G +
Sbjct: 184 LHSAASAHVEQYMRDDDRVSPCSSRGHM 211


>gi|255326412|ref|ZP_05367494.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296452|gb|EET75787.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 251

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 15/157 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R        ++ ++  R  W    A  +          VR    +++   
Sbjct: 110 QHDLNIGTVVRTANAMLAKEVHIIG-RRRWNRRGAMVT-----DRYQHVRHHPTIED--- 160

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
              F+              + P    +   +     +   ++FG+E  GL+ E  A +  
Sbjct: 161 ---FVAWAQGEGLEIIGIDIFPDSVPLETYDLP---KKCVLVFGQEGPGLSEELHAAARD 214

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
            +S        S+N + A  + +   +   +     +
Sbjct: 215 TLSIEQFGSTRSMNAATAAGIAMHAWVRRHVFGQIPS 251


>gi|296425385|ref|XP_002842222.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638483|emb|CAZ86413.1| unnamed protein product [Tuber melanosporum]
          Length = 420

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI---DSVRVFSNLKEAI 81
             N+G + R+ +   +  + +        S     +SA A  ++   +  +    + ++ 
Sbjct: 269 PGNMGAILRSAYFLGVDAVTITARNCARLSPVCLKASAGAAELLPIFEHAKSERMITQST 328

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
            +   +YA         ++       A  + E +  G  V ++ G E  GL      L+ 
Sbjct: 329 ENGWTVYAAIP-PPTKNQARRDRYVYAPEVAEVVKEG-PVVLLVGNEGEGLRPPLKKLAK 386

Query: 142 AIISF---P-VNPLFPSLNISQAVLLMV 165
             +S    P  + L  SLN+S A  L+ 
Sbjct: 387 FCVSLVKGPGTDSLVDSLNVSVATALLC 414


>gi|332663063|ref|YP_004445851.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331877|gb|AEE48978.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 253

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 21/147 (14%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRV-FSNLKEA 80
           Q   N+G + R    F + Q+ L +P      + K   ++  +   I +  V    LK  
Sbjct: 116 QDPGNLGTILRIADWFGILQVFL-SPDCVELYNPKVIQATMGSFLRIKTAIVELPALKVG 174

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           I  L    A  +        V  P                  +I G E  G+  E I+L 
Sbjct: 175 IPGLTTYGALLSGENVFETKVQHP----------------ALLIIGNEGKGIREEYISLI 218

Query: 141 NAIISFP--VNPLFPSLNISQAVLLMV 165
           +  IS P   +    SLN   A  ++ 
Sbjct: 219 DRAISIPRHADGGAESLNAGVATGIIC 245


>gi|256825377|ref|YP_003149337.1| pyrimidine reductase, riboflavin biosynthesis [Kytococcus
           sedentarius DSM 20547]
 gi|256688770|gb|ACV06572.1| pyrimidine reductase, riboflavin biosynthesis [Kytococcus
           sedentarius DSM 20547]
          Length = 229

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 71  VRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
            RVF  L+ A+ D+  +  +TAR        + P+            G+   ++    R 
Sbjct: 67  ARVFGLLR-ALCDVVLVGGSTARREAYRPVTVDPR--WAPFRTAAGLGEEPPLLAVVSRS 123

Query: 131 GLTNEEIALSNAIISFPVNPLFP 153
           G    E+  ++ +++      F 
Sbjct: 124 GELGAELTGADRVLTVDARDGFA 146


>gi|163850108|ref|YP_001638151.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|254559252|ref|YP_003066347.1| rRNA methylase [Methylobacterium extorquens DM4]
 gi|163661713|gb|ABY29080.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|254266530|emb|CAX22294.1| putative rRNA methylase [Methylobacterium extorquens DM4]
          Length = 149

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++ GRE  G+     A ++A +  P+ P   SLN++    +M+ E +  
Sbjct: 98  CLLMGRESAGVPEAVHAAADARVVVPIRPGLRSLNVAVCAAMMLGEAIRQ 147


>gi|313246736|emb|CBY35609.1| unnamed protein product [Oikopleura dioica]
          Length = 1335

 Score = 37.3 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
            +   ++ G ER G+    I+L + ++  P   +  SLN+  +  + +WE    ++
Sbjct: 1281 KKCVVVLGNEREGIPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTRGNL 1335


>gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
 gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
          Length = 246

 Score = 37.3 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 19/167 (11%)

Query: 4   YAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSAN 63
             P+   S    V++L   Q   N+G + R      +  + ++        +     ++ 
Sbjct: 95  EKPKHDISKAKQVLLLDRIQDPGNLGTLIRTADAAGI-DMVVMEKGTADAYQDKVMRASQ 153

Query: 64  ADCVIDSVRVFSN-LKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
                  + + +  L + I      +Y T   N               V  + I S    
Sbjct: 154 GSVF--HIPIVTTELNKFIEQFDGPVYGTALEN--------------AVSYKNIESQDIF 197

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            ++ G E  G+  E +A ++  +  P+     SLN++ A  ++++  
Sbjct: 198 ALLLGNEGEGVNKELLAHTSQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|302852751|ref|XP_002957894.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
           nagariensis]
 gi|300256771|gb|EFJ41030.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
           nagariensis]
          Length = 701

 Score = 37.0 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNL 77
           +L   Q   N+G +AR+   F    L L+       ++KA  SS  A  ++    V  +L
Sbjct: 441 VLDAVQDPGNLGSLARSALAFGWDGLFLLPGCCDPFNDKALRSSRGA--LLRLPTVTGDL 498

Query: 78  KEAIA 82
            E + 
Sbjct: 499 VELLE 503


>gi|198275948|ref|ZP_03208479.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
 gi|198271577|gb|EDY95847.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
          Length = 252

 Score = 37.0 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 27/158 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81
           Q   N+G + R    F +  +          + K   ++  A   +  VR+ + +LKE I
Sbjct: 111 QDPGNLGTIIRIADWFGIEDIFCSQGTADAFNPKTVQATMGA---LARVRLHYCDLKEFI 167

Query: 82  ADLHFIYATTARNRNNFK-SVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
                      R +      V         +  +  S Q V I+ G E  G+  E   L 
Sbjct: 168 -----------RVQTERNVPVFGTFLDGKNIYSQKLSAQGV-IVMGNEGNGVCKEIENLV 215

Query: 141 NAIISFPVNPLFP-------SLNISQAVLLMVWECMEN 171
           +  +  P    +P       SLN++ A  ++  E    
Sbjct: 216 SQKLLIP---NYPQGKETSESLNVAVATAIVCAEFRRR 250


>gi|88857415|ref|ZP_01132058.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820612|gb|EAR30424.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas
           tunicata D2]
          Length = 261

 Score = 37.0 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 55/161 (34%), Gaps = 16/161 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
             +     KG ++ L       N+G + R    + +T +   +      + K  S++  +
Sbjct: 110 KQKAVPEPKGMMLALDGVSDPGNLGTIIRVADWYGITHIIASDDCADPYNPKTISATMGS 169

Query: 65  DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
              +   +V  +L   + +                 +         +++  F+ + + I+
Sbjct: 170 FSRVHVSQV--DLPSYLNNAAL-------------PIYGAYLGGENVHQVSFAKEGI-IL 213

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
            G E  G+           I+ P      SLN++ A  +++
Sbjct: 214 MGSESHGIRPLAGQHVTQKITIPAFGQAESLNVAMATGIIL 254


>gi|315657840|ref|ZP_07910720.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315491637|gb|EFU81248.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 230

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++FG E  GLT         ++         SLN+  A  + +W          
Sbjct: 174 MVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRRAYPPRP 227


>gi|297243148|ref|ZP_06927086.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296889359|gb|EFH28093.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 268

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +   ++FG E  GL+ + + +++ ++         SLN   A  + +   +      
Sbjct: 210 KRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQHAAP 266


>gi|119192340|ref|XP_001246776.1| hypothetical protein CIMG_00547 [Coccidioides immitis RS]
          Length = 495

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 25/178 (14%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
             N+G + R+ + F        + R+  P S     SS+ A   I  + +          
Sbjct: 293 PHNLGAILRSAYYFG-ADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLISIHDT------- 344

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNER----------IFSGQNVGIIFGRERWGLT 133
           + FI A + RN   F +   P   A     +                  ++ G E  GL+
Sbjct: 345 VSFIDA-SRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLGNEGDGLS 403

Query: 134 NEEIALSNAIISFP-----VNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTP 186
            E  + ++A +        +     SLN++ A  ++    M  S V S  N      P
Sbjct: 404 KELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILCQAFMRGSGVRSRANETSSFLP 461


>gi|298253229|ref|ZP_06977021.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532624|gb|EFH71510.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 268

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 24/57 (42%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +   ++FG E  GL+ + + +++ ++         SLN   A  + +   +    V 
Sbjct: 210 KRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQHAVP 266


>gi|283782612|ref|YP_003373366.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
 gi|283441898|gb|ADB14364.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
          Length = 268

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +   ++FG E  GL+ + + +++ ++         SLN   A  + +   +      
Sbjct: 210 KRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQHAAP 266


>gi|298345662|ref|YP_003718349.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|298235723|gb|ADI66855.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
          Length = 198

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++FG E  GLT         ++         SLN+  A  + +W          
Sbjct: 142 MVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRRAYPPRP 195


>gi|189459414|ref|ZP_03008199.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
 gi|189433871|gb|EDV02856.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
          Length = 257

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 25/158 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV-FSNLKEAI 81
           Q   N+G + R    F +  +   +      + K   ++  A   I  V++ + NL + +
Sbjct: 111 QDPGNLGTIIRIADWFGIEHIFCSSGTADVYNPKTIQATMGA---IARVKLHYCNLPDFL 167

Query: 82  ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    +A  +N    +         +  +      + II G E  G++ +   +  
Sbjct: 168 K--------SASQKNT--PIFGTFLDGENIYTQELPANGI-IIMGNEGNGISKQIAEMVT 216

Query: 142 AIISFPVNPLFP-------SLNISQAVLLMVWECMENS 172
             I  P    +P       SLN++ A  ++  E    +
Sbjct: 217 HRILIP---NYPQGCETSESLNVAVATAIVCAEFRRRT 251


>gi|15966476|ref|NP_386829.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307300487|ref|ZP_07580267.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307318352|ref|ZP_07597787.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15075747|emb|CAC47302.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306896034|gb|EFN26785.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306904653|gb|EFN35237.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 275

 Score = 37.0 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 14/143 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPR-DGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
           N+G + R    F +    L++         KA   S  +   +   R      E I  L 
Sbjct: 139 NMGSLFRNAAAFGV-DAVLMDSTSCDPMYRKAIRVSVGSVLTLPFAR-EGTAAELIERLQ 196

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                           L+P+  A +    I       ++ G E  GL    ++       
Sbjct: 197 TA--------GFVVWGLSPRGTADI--NAIPPAPRTALLVGTEGEGLPETILSQI-RTAR 245

Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
               P   SLN++ A  + + + 
Sbjct: 246 IRQRPGLDSLNVAMAAGIALHQV 268


>gi|291515298|emb|CBK64508.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 251

 Score = 37.0 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 17/160 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R    F +T +          + K   ++  A   I  VRV         
Sbjct: 105 QNPGNLGTIIRLADWFGITDIVCSEASADCFNPKVVQATMGA---ILRVRVHYT------ 155

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           DL  +    ++       V         + E       + ++ G E  G+T+        
Sbjct: 156 DLAALL---SKAAALGLPVCGTFLEGANIYETELKPAGI-VVMGNEGRGITDAVARTVTQ 211

Query: 143 IISFPVNPLFP----SLNISQAVLLMVWECMENSIVSSEK 178
            +  P  P       SLN++ A  ++  E    +   + K
Sbjct: 212 KLFIPPWPADRRGSESLNVAMATGIVCGEFRRQASAKAGK 251


>gi|15603722|ref|NP_246796.1| hypothetical protein PM1857 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722284|gb|AAK03941.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 359

 Score = 37.0 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 18/162 (11%)

Query: 11  SAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRL-VNPRDGWPSEKARSSSANADCVI 68
             K   ++L+   Q   N+G V R    F +  + +     D   +  A   +      +
Sbjct: 209 PRKQDCLVLIDGVQNPHNLGGVVRTCAVFGVKGVVIEQALADNLNAPAAMRVAEGG---M 265

Query: 69  DSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           + VRV       +A+A L        R        +   + A  L++  F+ + V ++  
Sbjct: 266 EYVRVLETTDVPKALAQL--------RQAGYQLIHVTANKQAKPLSKLHFTEKVVFVLNE 317

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           +    L   E      ++S   NPL   LNI+ A  +++ + 
Sbjct: 318 QGDASLAQAEDE--QVVLSL-GNPLKAELNIAVATGILLAQW 356


>gi|262278148|ref|ZP_06055933.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
 gi|262258499|gb|EEY77232.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
          Length = 258

 Score = 37.0 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    I G E  G ++  +  +   ++ P      SLN++ A  +  +E +   
Sbjct: 205 KPCVWILGNEGQGASDYALDHAQ-CVTIPQPGGQESLNVAIAGSICFFEMVRQR 257


>gi|167629871|ref|YP_001680370.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
 gi|167592611|gb|ABZ84359.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
          Length = 272

 Score = 37.0 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 13/182 (7%)

Query: 1   MTPYAPQLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKAR 58
           + P   +   +A  P +++V   Q   N+G + R      +T   L+ P    P   K  
Sbjct: 102 LAPAHWEAVIAAPEPFLLIVDGVQDPGNLGTIIRTAEAAGVTG-VLLTPGTVDPYGPKVI 160

Query: 59  SSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG 118
             +  A   +      + +  A        A + R R+   +V   ++           G
Sbjct: 161 RGTMGALFRLP----VATVPSAKG-----LAASLRERDISLAVADARDGVPYFEAPWDRG 211

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
            ++ I+ G E  G       L+   +  P+ P   SLN + A  ++++E   +  V+S +
Sbjct: 212 -SIAIVIGSEAHGPRPFWGDLAQLRVRIPLAPPVESLNAAVAAAVLLFEAARHRSVASTR 270

Query: 179 NV 180
            +
Sbjct: 271 GL 272


>gi|71415298|ref|XP_809720.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874146|gb|EAN87869.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 469

 Score = 37.0 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 88  YATTARNRNNFKSVLAPKEAAIVLNERIFSG-----QNVGIIFGRERWGLTNEEIALSNA 142
            A T  + +       P    I       +G       V I+ G E  GL+   ++  + 
Sbjct: 103 VALTPSHPDAQPVQSFPWRKVIREAGERRTGNEDCDGGVEIVLGMEN-GLSENVVSQCDY 161

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGEL 192
            +  P      SL++  A+ + +       +    ++    +  +++G +
Sbjct: 162 CLYIPQYGSIGSLSMISAMAIALHSAASAHVDQYMRDDDRVSPCSSRGHM 211


>gi|322825586|gb|EFZ30499.1| hypothetical protein TCSYLVIO_3210 [Trypanosoma cruzi]
          Length = 408

 Score = 37.0 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADL 84
             N+G + R+ +   +  + L    D      A + ++    V++ + V+ ++       
Sbjct: 204 PGNVGAIMRSAFFLGVRCVVL--SCDSAGCTAAMARASAG--VMEHMAVYRSVA---PTT 256

Query: 85  HFIYATTARNRNNFKS----------------VLAPKEAAIVLNERIFSGQNVGIIFGRE 128
            F+  T A++R                     + + ++A     +     +   ++ G E
Sbjct: 257 TFLENTIAQHRARGDPCSLEMYAAITMPMDAIMRSGRQAKGETEKGGEPMRRRLLLLGNE 316

Query: 129 RWGLTNEEIALSNAIISFPV 148
             GL  E + L +  +  P 
Sbjct: 317 DKGLPPEVVRLCSHAVHIPS 336


>gi|261338711|ref|ZP_05966595.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270276265|gb|EFA22119.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 273

 Score = 37.0 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 41/180 (22%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R    F    + +V P   W  + A  +      +   +    ++++ + D H 
Sbjct: 91  NIGSMVRTANAFTANTVHIVGPH-KWNRKGALMT-----ELYQHIEHHPSIQDLVDDWHR 144

Query: 87  -------------IYATTARNRNNFKSV------------LAPKEAAIVLNERIFSG--- 118
                          AT A ++    ++            L   + A ++   I  G   
Sbjct: 145 RIEQETCDATQRVAAATQALDQGTVPTMQAQQDLAQATHDLEAAQQARIIAMDIVPGAVP 204

Query: 119 -------QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
                  +   ++FG E  GL+++ + L++ ++         S+N   A  + +   +  
Sbjct: 205 LERYEFPERCLMLFGAEGPGLSSKALDLADDVVYISQFGSVRSINAGAAAAVSMHAWIAQ 264


>gi|313243076|emb|CBY39772.1| unnamed protein product [Oikopleura dioica]
          Length = 228

 Score = 37.0 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +   ++ G ER G+    I+L + ++  P   +  SLN+  +  + +WE     +
Sbjct: 174 KKCVVVLGNEREGIPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTRGFL 228


>gi|313237882|emb|CBY13012.1| unnamed protein product [Oikopleura dioica]
          Length = 643

 Score = 37.0 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           +   ++ G ER G+    I+L + ++  P   +  SLN+  +  + +WE     +
Sbjct: 589 KKCVVVLGNEREGIPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTRGFL 643


>gi|319403804|emb|CBI77388.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 271

 Score = 37.0 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 13/152 (8%)

Query: 8   LQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADC 66
           LQN  +  +I +L      E++G + R    F  T + L          K+  +S+ A  
Sbjct: 115 LQNLPEKALISVLCGISNYESMGAIFRNAAAFASTGIILDKTSCDPLYRKSIRASSGAAL 174

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
            +   R   +++  I        T   N N     L+P     + + +    ++  +IFG
Sbjct: 175 SVPYTR-GDDIESII--------TALSNANFKLYTLSPSATCYLKDAKAT--KHTALIFG 223

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            E   L    +  S  +   P+   F S+N++
Sbjct: 224 IEGNDLPTHILQKSETL-RIPMAYGFDSINLA 254


>gi|254507413|ref|ZP_05119548.1| ornithine carbamoyltransferase [Vibrio parahaemolyticus 16]
 gi|219549669|gb|EED26659.1| ornithine carbamoyltransferase [Vibrio parahaemolyticus 16]
          Length = 334

 Score = 37.0 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 26  EN---IGMVARAMWNFNLTQLRLVNPRDGWPSEK------ARSSSANADCVIDSVRVFSN 76
            N   +G          +  +RLV P+  WP E+      A ++S  A   +       N
Sbjct: 171 GNSLLVGAA----K-MGM-DIRLVAPKAYWPEEELVSACQAIANSTGAKITL-----TEN 219

Query: 77  LKEAIADLHFIY 88
           + E +    ++Y
Sbjct: 220 VDEGVQGCDYLY 231


>gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli
           CNPAF512]
          Length = 296

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 15/144 (10%)

Query: 18  ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--SANADCVIDSVRVFS 75
           +L       N+G + R+   FN     ++  +   P+E    +  ++ A  +I  +++ +
Sbjct: 151 VLDQVTDPHNVGAIMRSAVAFNAG--AVITTQRHSPTESGVLAKSASGALELIPYIQI-T 207

Query: 76  NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           NL +A+ +LH +  +T    +   + L          E  FSG  + ++ G E  GL  +
Sbjct: 208 NLADALGELHKLGFSTIGLDSEGPAPL----------EGTFSGDKLALVLGSEGKGLRQK 257

Query: 136 EIALSNAIISFPVNPLFPSLNISQ 159
                 A+    +     SLN+S 
Sbjct: 258 TRETVTALARLDMPGAIKSLNVSN 281


>gi|304390649|ref|ZP_07372602.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326405|gb|EFL93650.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 230

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 18/54 (33%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           ++FG E  GLT         ++         SLN+  A  + +W          
Sbjct: 174 MVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAISIWAWRRAYPPRP 227


>gi|289705731|ref|ZP_06502115.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
 gi|289557571|gb|EFD50878.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
          Length = 256

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 56/168 (33%), Gaps = 17/168 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    FN   + ++  R  W    A  +    D  +  V     ++    
Sbjct: 101 QHDLNIGTVVRTANAFNAAGVHIIG-RRRWNRRGAMVT----DRYL-HVHHHETVE---- 150

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVG-IIFGRERWGLTNEEIALSN 141
                 A T         VL        +    F       ++FG+E  GL+ E  A S+
Sbjct: 151 ------AFTEWAAGEGLPVLGVDLFPESVPVETFDFPRACVLVFGQEGPGLSAEVRAASS 204

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
           A++S        S+N   A  + +   +     S E    +    A++
Sbjct: 205 AVLSIAQYGSTRSINAGVAAGIAMHAWIRQHAASPESGASQTIPGASQ 252


>gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 257

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         + L        + K   +   +   ++   +  +L E   
Sbjct: 119 QDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLE--VLNGDLSE--- 173

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV------GIIFGRERWGLTNEE 136
              ++ A  A    N   V         LNE+  S ++V      G+I G E  G++ E 
Sbjct: 174 ---WVAALAA----NNLPV-----YGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAEL 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              + A +  P+     SLN++ A  ++++  
Sbjct: 222 AEKTTANLYIPIQGQAESLNVAIAGGILMFSL 253


>gi|189425511|ref|YP_001952688.1| hypothetical protein Glov_2454 [Geobacter lovleyi SZ]
 gi|189421770|gb|ACD96168.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 188

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 18/83 (21%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NADCVIDS------VRVFSNLKE 79
           +AR    F L++  LV P +       R  +       AD   D       VR   +L++
Sbjct: 34  IARTARTFGLSRYYLVTPSEEQQQLIQRIVTHWDSGWGADYNPDRREALSIVRPVPSLQD 93

Query: 80  AIADLHFI-------YATTARNR 95
           A+AD+  +        AT A  R
Sbjct: 94  ALADMQQVHHQPVNIIATGAARR 116


>gi|294659853|ref|XP_462280.2| DEHA2G17050p [Debaryomyces hansenii CBS767]
 gi|199434283|emb|CAG90782.2| DEHA2G17050p [Debaryomyces hansenii]
          Length = 1441

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 22/158 (13%)

Query: 16   VII--LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRV 73
            +++  LVD     N+G + R         L L N  +     + ++ +  AD  +  V V
Sbjct: 1292 IVVSSLVD--KPPNLGGICRLCDVLGAGLLTL-NDINVKNHPQFKNVAVTADYWMPMVEV 1348

Query: 74   FSN-----LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
              +     LKE   + + +              L   + ++ LN  +   Q   I+ GRE
Sbjct: 1349 KPSEIICFLKEKKKEGYTLIG------------LEQTDKSVELNSDLKFPQKSLILLGRE 1396

Query: 129  RWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            + G+  + +A  +  +      +  S+NI  A  ++V 
Sbjct: 1397 KEGVPGDLLAELDFCVEIKQVGVIRSMNIQTATAIIVH 1434


>gi|255535419|ref|YP_003095790.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
           3519-10]
 gi|255341615|gb|ACU07728.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
           3519-10]
          Length = 242

 Score = 37.0 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 13  KGPV-IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSV 71
           + PV +IL   Q   N+G + R    F + Q+          + K   +S  +   +   
Sbjct: 95  EPPVQLILDGIQDPGNLGTIIRLADWFGIGQIICSEDTVDIYNPKVIQASMGS--FLRVN 152

Query: 72  RVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
             ++++KE + D     AT   +                  ER        ++FG E  G
Sbjct: 153 VFYADIKEYLTDSP--IATIGTDMEGENLYNF------KFPERFN------LVFGNEGNG 198

Query: 132 LTNEEIALSNAIISFP---VNPLFPSLNISQAVLLMV 165
           +  E   L    I+ P    +    SLN+S A  +++
Sbjct: 199 IRPEIDNLLTDKITIPRFGKSKSTESLNVSMATGIIL 235


>gi|104783013|ref|YP_609511.1| hypothetical protein PSEEN4029 [Pseudomonas entomophila L48]
 gi|95112000|emb|CAK16727.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 133

 Score = 37.0 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMV 165
           E A  L E     + +  IFG E   L  +  A     I  P       +N++  V +++
Sbjct: 61  EGARPLPEYTHPDRAI-YIFGPEDGSLDADVRAWCEETIYIPTEGC---MNLAATVNVVL 116

Query: 166 WECMENSIVSSEKN 179
           ++ M   + +    
Sbjct: 117 YDRMAKGLNTRSGP 130


>gi|288799931|ref|ZP_06405390.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333179|gb|EFC71658.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 256

 Score = 37.0 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 26/180 (14%)

Query: 3   PYAPQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARS 59
           P+ P  + + +  +I  L   Q   N+G + R    F +    +V   D     + K   
Sbjct: 95  PFFPTTEATPQNQLILALDGVQDPGNLGTIIRIADWFGIKN--IVCSEDTVDVYNPKVIQ 152

Query: 60  SSAN--ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117
           +S    A   ++   +  N  E IA    +Y T     N +   L+              
Sbjct: 153 ASMGSVAQVSVNYCDL-KNFIENIAPKVPVYGTCLDGENIYNQTLS-------------- 197

Query: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECMENSIV 174
                I+ G E  G++     L    +  P         SLN++ A  +   E    ++V
Sbjct: 198 -SKGIIVMGNEGKGVSTAIKQLFTHKLLIPNYHPQSAIDSLNVAIATAITCAEFKRQNLV 256


>gi|222054589|ref|YP_002536951.1| hypothetical protein Geob_1491 [Geobacter sp. FRC-32]
 gi|221563878|gb|ACM19850.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 193

 Score = 37.0 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 26/154 (16%)

Query: 31  VARAMWNFNLTQLRLVNPRDGWPSEKARSSSA-----NA------DCVIDSVRVFSNLKE 79
           +AR+   F L +  ++ P     S   R  +       A         ++ + V  +L+ 
Sbjct: 40  IARSARTFGLYRYFVITPVAEQRSLSERIRAHWLEGYGAAYNPKRKAALELIEVIDSLQT 99

Query: 80  AIADLHFIYA-------TTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
           A+A L   +        T A+ R+N        + + +       GQ   ++FG   WG+
Sbjct: 100 ALAQLEKKFGKPVKVIVTGAQGRDNSI------DCSRLAQLLQNRGQPYLLLFGT-GWGM 152

Query: 133 TNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
           T E    ++ ++        +  L +  A  +++
Sbjct: 153 TEEVFGQADYVLGPIKGPGDYNHLAVRSAAAIIL 186


>gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 246

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 189 KEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|149642437|ref|XP_001510423.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 199

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISF-PVNPLFP---SLNISQAVLLMVW 166
              +   ++ G E  GL+ E       +++  P   +     SLN+S A  +++ 
Sbjct: 136 RWDRPTVLVIGNEGSGLSAEVKDACQVLLNVSPGREITSGIESLNVSVAAGIILH 190


>gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122]
          Length = 246

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
           + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 189 KEVTSSDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|255085818|ref|XP_002505340.1| predicted protein [Micromonas sp. RCC299]
 gi|226520609|gb|ACO66598.1| predicted protein [Micromonas sp. RCC299]
          Length = 525

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPV-NPLFPSLNISQAVLLMVWECMENSIVSSEK 178
               + G E  GL    +      ++ P       S N++ A  L++++ M+  +     
Sbjct: 455 RAVYVLGSEDNGLNRPIVEACQCHVALPKWIGRSASYNVAMAGTLVMYDRMQKQLRDGHV 514

Query: 179 NVKE 182
             +E
Sbjct: 515 VTRE 518


>gi|121595862|ref|YP_987758.1| aspartate carbamoyltransferase catalytic subunit [Acidovorax sp.
           JS42]
 gi|222112063|ref|YP_002554327.1| aspartate carbamoyltransferase catalytic subunit [Acidovorax ebreus
           TPSY]
 gi|171769521|sp|A1WBQ7|PYRB_ACISJ RecName: Full=Aspartate carbamoyltransferase; AltName:
           Full=Aspartate transcarbamylase; Short=ATCase
 gi|254788818|sp|B9MF57|PYRB_DIAST RecName: Full=Aspartate carbamoyltransferase; AltName:
           Full=Aspartate transcarbamylase; Short=ATCase
 gi|120607942|gb|ABM43682.1| aspartate carbamoyltransferase [Acidovorax sp. JS42]
 gi|221731507|gb|ACM34327.1| aspartate carbamoyltransferase [Acidovorax ebreus TPSY]
          Length = 320

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 14/62 (22%)

Query: 31  VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           VAR    A+      ++R+V PR   PS+ A+            VRVF NL+E I     
Sbjct: 182 VARSDIHALTTLGAAEVRVVGPRTLVPSDMAQM----------GVRVFHNLEEGIKGCDV 231

Query: 87  IY 88
           + 
Sbjct: 232 VI 233


>gi|115450091|ref|NP_001048646.1| Os03g0100500 [Oryza sativa Japonica Group]
 gi|113547117|dbj|BAF10560.1| Os03g0100500 [Oryza sativa Japonica Group]
          Length = 220

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
              ++ GRE+ G+  + I + +A +  P   +  SLN+  +  + VWE      +++
Sbjct: 164 KTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQQRIAT 220


>gi|319795845|ref|YP_004157485.1| aspartate carbamoyltransferase [Variovorax paradoxus EPS]
 gi|315598308|gb|ADU39374.1| aspartate carbamoyltransferase [Variovorax paradoxus EPS]
          Length = 320

 Score = 37.0 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 31  VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           VAR    A+      ++R+V P+   P + A             VRV   L+E I D   
Sbjct: 182 VARSDIHALTTLGCAEVRVVGPKTLVPGDMAGM----------GVRVCHTLEEGIKDCDV 231

Query: 87  IY 88
           I 
Sbjct: 232 II 233


>gi|84387826|ref|ZP_00990841.1| ornithine carbamoyltransferase [Vibrio splendidus 12B01]
 gi|218710659|ref|YP_002418280.1| ornithine carbamoyltransferase [Vibrio splendidus LGP32]
 gi|84377341|gb|EAP94209.1| ornithine carbamoyltransferase [Vibrio splendidus 12B01]
 gi|218323678|emb|CAV20000.1| Ornithine carbamoyltransferase [Vibrio splendidus LGP32]
          Length = 334

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 20/72 (27%)

Query: 26  EN---IGMVARAMWNFNLTQLRLVNPRDGWPSE------KARSSSANADCVIDSVRVFSN 76
            N   +G          +  +RLV P+  WP E      +A + S  A   +       +
Sbjct: 171 GNSLLVGAA----K-MGM-DIRLVAPKAFWPEEHLVEECQAIAQSTGAKITL-----TED 219

Query: 77  LKEAIADLHFIY 88
           + E +    F+Y
Sbjct: 220 VAEGVKGCDFLY 231


>gi|222624007|gb|EEE58139.1| hypothetical protein OsJ_09050 [Oryza sativa Japonica Group]
          Length = 1695

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 120  NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               ++ GRE+ G+  + I + +A +  P   +  SLN+  +  + VWE      +++
Sbjct: 1639 KTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQQRIAT 1695


>gi|154488135|ref|ZP_02029252.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis
           L2-32]
 gi|154083608|gb|EDN82653.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis
           L2-32]
          Length = 304

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 23/59 (38%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +   ++FG E  GL+ + + L++ ++         S+N   A  + +   +        
Sbjct: 246 ERCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIAQHAAPQA 304


>gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 261

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 15/176 (8%)

Query: 3   PYAPQLQNSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSS 61
           P  P L     G  +   +  Q   N+G + R      +  L L        S K   +S
Sbjct: 100 PATPSLPIQTLGLAL---ETIQDPGNLGTLIRTSVATQVEGLLLNQQCADLESPKVLRAS 156

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           A A   +   R        +         T + +        P   A     ++   Q  
Sbjct: 157 AGAWFHLPQ-RATDKFVTVLQ--------TYKQQGMQLIATVPD--ASHTFWQVDYRQPT 205

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            I+ G E  GL+   + L++  ++ P+ P   SLN + A  L+++E          
Sbjct: 206 LILIGNEGAGLSQPVLDLADHQVNIPIAPGVESLNAAIAAALLLYEVRRQRDGKPA 261


>gi|108705676|gb|ABF93471.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
            Japonica Group]
          Length = 1727

 Score = 37.0 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 120  NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               ++ GRE+ G+  + I + +A +  P   +  SLN+  +  + VWE      +++
Sbjct: 1671 KTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQQRIAT 1727


>gi|322489661|emb|CBZ24920.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 508

 Score = 37.0 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 97  NFKSVLAPKEAAIVLNERIFSGQNVG------IIFGRERWGLTNEEIAL-SNAIISFPVN 149
                  P + A +L     +   V        + G E   L+   +    + ++  P  
Sbjct: 391 YEHPFSHPTQQATLLRVEKGATSTVAHLPMVFYVLGAEDGTLSAHHVQHDVDDVVFIPTT 450

Query: 150 PLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATK 189
               S+N++  V +++++ +          V E  +  ++
Sbjct: 451 ---GSMNLAATVNVLLYDRLSKECRGVHPGVAESASTGSR 487


>gi|302382926|ref|YP_003818749.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193554|gb|ADL01126.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 268

 Score = 36.6 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 115 IFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECME 170
           +  G    ++ G E  GL    +A     +  P+   F SLN+S    L +++  +
Sbjct: 211 LKPGGRRALLLGSEGPGLPASVMAR-TRTVGIPMAGGFDSLNVSVTSALGLYQLTQ 265


>gi|120401678|ref|YP_951507.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119954496|gb|ABM11501.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 214

 Score = 36.6 bits (84), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 15/146 (10%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NIG V R    F +  + +V  R  W    A  +          +       E +    
Sbjct: 76  ANIGSVVRTANAFAVHTVHIVG-RRRWNRRGAMVT-----DRYQRLCHHDTTAELLD--- 126

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
             +AT    R     V           E     ++  +IFG+E  G+T++  A +   +S
Sbjct: 127 --FAT----RAGLTVVAVDNVPGASRIEEASLPRDCLLIFGQEGPGITDDAKAGAPLTVS 180

Query: 146 FPVNPLFPSLNISQAVLLMVWECMEN 171
                   S+N   A  + +   +  
Sbjct: 181 IAQFGSTRSINAGVAAGIAMHAWIRQ 206


>gi|254368173|ref|ZP_04984193.1| rRNA methylase [Francisella tularensis subsp. holarctica 257]
 gi|134253983|gb|EBA53077.1| rRNA methylase [Francisella tularensis subsp. holarctica 257]
          Length = 63

 Score = 36.6 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 141 NAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           + +   P+     SLN+S A  + ++E +   
Sbjct: 28  DFLAKLPMLGEVSSLNVSVATGIALYETVRQR 59


>gi|303281969|ref|XP_003060276.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457747|gb|EEH55045.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 492

 Score = 36.6 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 56/165 (33%), Gaps = 20/165 (12%)

Query: 20  VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKE 79
           V P+   N+G + R+ W      +  V  R     E + ++ ++    +     + +   
Sbjct: 315 VKPKHDANVGTLWRSAWQLGAAFIFTVAARYKHKYEASDTTQSHKQLPLHKHDDWGDF-- 372

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
                       A++  +   ++A +     L +          + G E  GL    +  
Sbjct: 373 ------------AKSSPHGAVLVAIEMGGTPLQDFAHP-PRAVYVLGSEDNGLNRPIVEA 419

Query: 140 SNAIISFPVNPLFP---SLNISQAVLLMVWECMENSIVSSEKNVK 181
               ++ P    F    S N++ A  L++++ M   + + +    
Sbjct: 420 CQCHVALP--KWFGRSASYNVAMAGTLVMYDRMIKQLWAGDAKAP 462


>gi|146319352|ref|YP_001199064.1| hypothetical protein SSU05_1698 [Streptococcus suis 05ZYH33]
 gi|145690158|gb|ABP90664.1| Unknown protein [Streptococcus suis 05ZYH33]
          Length = 56

 Score = 36.6 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 17 IILVDPQLGENIGMVARAMWNFNLTQLRLVNP 48
          I+L +PQ+ +N G +AR     N + L ++ P
Sbjct: 17 IVLFEPQIPQNTGNIARTCAATN-SPLHIIKP 47


>gi|146088269|ref|XP_001466033.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070134|emb|CAM68468.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 468

 Score = 36.6 bits (84), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 114 RIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSI 173
           R      V ++ G E  GL+ E     N     P      SL++  A+ +        ++
Sbjct: 128 RDHQSAGVELVLGMEN-GLSQEVADACNLCTYIPQYGSVGSLSMLSALAIAAHSTWRAAV 186

Query: 174 VSSEKNVKEQNTPATKGELLS 194
              E+      + A    L  
Sbjct: 187 --REEGNTSDTSLAPHRALHG 205


>gi|218191897|gb|EEC74324.1| hypothetical protein OsI_09608 [Oryza sativa Indica Group]
          Length = 1489

 Score = 36.6 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 120  NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
               ++ GRE+ G+  + I + +A +  P   +  SLN+  +  + VWE      +++
Sbjct: 1433 KTVLVLGREKEGIPVDIIHVLDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQQRIAT 1489


>gi|315127020|ref|YP_004069023.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp.
           SM9913]
 gi|315015534|gb|ADT68872.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp.
           SM9913]
          Length = 243

 Score = 36.6 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 51/149 (34%), Gaps = 28/149 (18%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWP--SEKARSSSANADCVIDSVRVFSNLKEA 80
               N+G + R    + +    +V   D     + K  S++  +   +   +V  +L   
Sbjct: 110 SDPGNLGTIIRVADWYGIK--HIVASTDSADPYNPKTISATMGSFVRVSVSQV--DLPSY 165

Query: 81  IADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALS 140
           +  L                +         ++   F+G+ V ++ G E  G+        
Sbjct: 166 LTSLDV-------------PIYGAFLEGENVHHCQFAGKGV-LLMGSESHGIR----QQC 207

Query: 141 NAIIS----FPVNPLFPSLNISQAVLLMV 165
            A+++     P      SLN++ A  +++
Sbjct: 208 AALVTNKITIPAFGGAESLNVAMATGIIL 236


>gi|302865196|ref|YP_003833833.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302568055|gb|ADL44257.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 207

 Score = 36.6 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 17/156 (10%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    F   ++ +V  R  W    A  +          VR    ++E + 
Sbjct: 67  QHDFNIGTVVRNANAFLAAEVHIVG-RRRWNRRGAMVT-----DRYQHVRHHPTIEEFV- 119

Query: 83  DLHFIYATTARNRNNFKSVLAPKE-AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSN 141
                    A  R+    V+           E     +   ++FG+E  GL+    +   
Sbjct: 120 ---------AWARDERLPVVGIDNLPGSRPMETAVLPRRCVLLFGQEGPGLSAVARSACE 170

Query: 142 AIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           A+ S        S+N   A  + +   + +      
Sbjct: 171 ALFSIAQYGSTRSINAGVASGIAMHAWIRSYAGPPP 206


>gi|237737107|ref|ZP_04567588.1| tRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420969|gb|EEO36016.1| tRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 187

 Score = 36.6 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 17/103 (16%)

Query: 72  RVFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAA-IVLNERIFSGQNVGI 123
           RV +++++ IA++         I  T+AR        + P       L+++IF      +
Sbjct: 86  RVMNSIEDTIAEIEEREGQRPVIITTSAR--------IFPNTVGYKELSDKIFEDDRPYL 137

Query: 124 IFGRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
           +     WGLT+E + +S+ I+     N  +  L++  AV +++
Sbjct: 138 LLFGTGWGLTDEVMDMSDYILEPIRGNTQYNHLSVRAAVAIIL 180


>gi|221124270|ref|XP_002159842.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 1693

 Score = 36.6 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 31   VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
            VAR    A+      ++R+V P+   PS+ A+            VRV   L+E I D   
Sbjct: 1555 VARSDIHALTTLGCAEVRVVGPKTLVPSDMAQM----------GVRVCHTLEEGIKDCDV 1604

Query: 87   IY 88
            I 
Sbjct: 1605 II 1606


>gi|114766067|ref|ZP_01445077.1| RNA methyltransferase, TrmH family, group 3 [Pelagibaca bermudensis
           HTCC2601]
 gi|114541702|gb|EAU44742.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           HTCC2601]
          Length = 259

 Score = 36.6 bits (84), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 16/146 (10%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           ++L       N+G + R+   F    +  V       + +  + +  A   ++       
Sbjct: 114 VLLDRVSDPHNVGAILRSAEVFGAQAVIGV---QHHSAPETGALAKTASGALERQ---PY 167

Query: 77  LKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNVGIIFGRERWGL 132
           L+E  +AD      T    +     VL     A    E+   G   + V ++ G E  GL
Sbjct: 168 LRERNLAD------TIRTLQTMGYLVLGLDGEAEGTIEQALEGLRDRPVALVLGAEGPGL 221

Query: 133 TNEEIALSNAIISFPVNPLFPSLNIS 158
             +     + ++       F SLN+S
Sbjct: 222 REKTKTTVDKLVRIDFAGGFGSLNVS 247


>gi|296875965|ref|ZP_06900024.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433040|gb|EFH18828.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
          Length = 248

 Score = 36.6 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 23/47 (48%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
           ++ G E  G++ E    ++ ++   +     SLN++ A  ++++   
Sbjct: 200 LVMGNEGKGISPEMATRADQLVHITMPGRAESLNVAVAAGILMFYLR 246


>gi|332030022|gb|EGI69847.1| RNA methyltransferase-like protein 1 [Acromyrmex echinatior]
          Length = 438

 Score = 36.6 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAI-------ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           + V ++ G E  G++   +     +       ++ P+     SLN+  AV ++ +E    
Sbjct: 373 REVVLVIGGETEGIS---LESCKLLRSRNCTRVNIPLTNGIDSLNVGVAVGIVTFEMKRQ 429


>gi|320532367|ref|ZP_08033212.1| ornithine carbamoyltransferase [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135438|gb|EFW27541.1| ornithine carbamoyltransferase [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 342

 Score = 36.6 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 37  NFNLTQL----------RLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLH 85
           N   + L          R+V P++ WP ++  +++   AD     V +  +++E +A + 
Sbjct: 178 NMGRSLLVNGALLGADVRIVAPKELWPDDECVAAARRLADSTGARVTLTESVEEGVAGVD 237

Query: 86  FI 87
           FI
Sbjct: 238 FI 239


>gi|322492292|emb|CBZ27567.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 479

 Score = 36.6 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 1/66 (1%)

Query: 116 FSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
                V ++ G E  GL+ E +   N     P      SL++  A+ +         +  
Sbjct: 130 RQSAGVQLVLGMEN-GLSQEVVDACNLCTYIPQYGSVGSLSMLSALAIAAHSTWRAVVRE 188

Query: 176 SEKNVK 181
                 
Sbjct: 189 DGTTFH 194


>gi|127513340|ref|YP_001094537.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella loihica PV-4]
 gi|126638635|gb|ABO24278.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella loihica PV-4]
          Length = 174

 Score = 36.6 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           Q    +FG E   L    I  ++ ++  P       +N++ +V ++++    + +   E 
Sbjct: 101 QKAIYLFGPEDGTLDQALIDCADEVVYVPT---VGCMNLASSVNVLLY----DRLAKGEH 153

Query: 179 NVKEQNTPATKG 190
              +    A++ 
Sbjct: 154 LSGDDLIRASRD 165


>gi|302757075|ref|XP_002961961.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii]
 gi|302775416|ref|XP_002971125.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii]
 gi|300161107|gb|EFJ27723.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii]
 gi|300170620|gb|EFJ37221.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii]
          Length = 186

 Score = 36.6 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
            V ++ GRE+ G+    I   +A +  P   +  SLN+  +  + VWE  +  +    
Sbjct: 127 RVVLVLGREKDGIPVNLIQTLDACLEIPQLGMIRSLNVHVSGAIAVWEYTKQHLQGGP 184


>gi|68535279|ref|YP_249984.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68262878|emb|CAI36366.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 227

 Score = 36.6 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 15/152 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG V R    F +  + +V  R  W    A  +      +     V   L+ A  +   
Sbjct: 90  NIGTVVRTANAFAVDTVHIVG-RRRWNRRGAMVT-DRYQHLQHHATVGEVLEFAAREGLV 147

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           + A       +      P E A +        +   ++FG+E  G+T E    +   +S 
Sbjct: 148 VVAV------DNTPGCVPLETAEL-------PERCLLLFGQEGPGVTQEAQDAARMTVSI 194

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                  S+N   A  + +   +      S+ 
Sbjct: 195 AQFGSTRSINAGVAAGIAMHAWIRQHADLSQA 226


>gi|308234639|ref|ZP_07665376.1| RNA methyltransferase, TrmH family protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 268

 Score = 36.6 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +   ++FG E  GL+ + + +++ ++         SLN   A  + +   +      
Sbjct: 210 KRCLMLFGAEGPGLSKKALKMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQHAAP 266


>gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
          Length = 246

 Score = 36.6 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 109 IVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            V  + + S  +  ++ G E  G+  E +A +   +  P+     SLN++ A  ++++  
Sbjct: 185 AVAYKEVTSIDSFALLLGNEGEGVNPELLAHTTQNLIIPIYGKAESLNVAIAGSILLYHL 244


>gi|227876391|ref|ZP_03994503.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227842932|gb|EEJ53129.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 197

 Score = 36.6 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%)

Query: 107 AAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                 E     +   +IFG E  G+T     + + +I         SLN+  A  + +W
Sbjct: 127 PGAENLESCELPRRCLMIFGEESSGITPATQEILDHLIQITQYGSTRSLNVGHAAAISMW 186

Query: 167 ECMEN 171
             +  
Sbjct: 187 AWVRA 191


>gi|241999504|ref|XP_002434395.1| chitinase, putative [Ixodes scapularis]
 gi|215497725|gb|EEC07219.1| chitinase, putative [Ixodes scapularis]
          Length = 580

 Score = 36.6 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 208 YFRPVEKKKKMLDDLYSIFIRPELMR 233
           +    +K   M+ +L  + +R  L  
Sbjct: 337 FLDQKDKVVDMMRNLRRMLLRANLTT 362


>gi|163840834|ref|YP_001625239.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162954310|gb|ABY23825.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 278

 Score = 36.6 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 22/140 (15%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF------SNLKE 79
           N+G + R+     +    L++PR   P   ++   S  A   +   R+       S LK 
Sbjct: 133 NLGAIFRSAAALEI-DAVLISPRCADPLYRRSIRVSMGAVFQVPWARLTQWPEDLSKLKS 191

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A          +       +  +   E A  L ER+       +I G E  G +   +A 
Sbjct: 192 A--------GFSTVALALEQDSMTLDELATKLPERL------ALILGTEGEGPSAPVLAE 237

Query: 140 SNAIISFPVNPLFPSLNISQ 159
            +  +  P++    SLN++ 
Sbjct: 238 VDQTVMIPMSGGVDSLNVAA 257


>gi|329944195|ref|ZP_08292454.1| ornithine carbamoyltransferase [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530925|gb|EGF57781.1| ornithine carbamoyltransferase [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 342

 Score = 36.6 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 37  NFNLTQL----------RLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLH 85
           N   + L          R+V P++ WP E+  +++   A+     + +  +++E +A + 
Sbjct: 178 NMGRSLLVNGALLGADVRIVAPKELWPDEECVAAAHQVAESTGACITLTESVEEGVAGVD 237

Query: 86  FI 87
           F+
Sbjct: 238 FV 239


>gi|239817575|ref|YP_002946485.1| aspartate carbamoyltransferase catalytic subunit [Variovorax
           paradoxus S110]
 gi|259547417|sp|C5CL68|PYRB_VARPS RecName: Full=Aspartate carbamoyltransferase; AltName:
           Full=Aspartate transcarbamylase; Short=ATCase
 gi|239804152|gb|ACS21219.1| aspartate carbamoyltransferase [Variovorax paradoxus S110]
          Length = 320

 Score = 36.6 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 31  VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           VAR    A+      ++R+V P+   P + A             VRV   L+E I D   
Sbjct: 182 VARSDIHALTTLGCAEVRVVGPKTLVPGDMAGM----------GVRVCHTLEEGIRDCDV 231

Query: 87  IY 88
           I 
Sbjct: 232 II 233


>gi|227497887|ref|ZP_03928068.1| ornithine carbamoyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226832698|gb|EEH65081.1| ornithine carbamoyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 350

 Score = 36.6 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 37  NFNLTQL----------RLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLH 85
           N   + L          R+V PR  WP E+  + +   A+     + V  ++ + +A + 
Sbjct: 186 NMGRSLLVNGAMIGADVRIVAPRALWPDEECIAQAHQVAERTGARITVTESVPQGVAGVD 245

Query: 86  FI 87
           F+
Sbjct: 246 FV 247


>gi|237809198|ref|YP_002893638.1| ornithine carbamoyltransferase [Tolumonas auensis DSM 9187]
 gi|237501459|gb|ACQ94052.1| ornithine carbamoyltransferase [Tolumonas auensis DSM 9187]
          Length = 333

 Score = 36.6 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 38  FNLTQLRLVNPRDGWPSEKARSSSAN-ADCVIDSVRVFSNLKEAIADLHFIY 88
             +  +RL  PR  WP +  +  +   A      + +  ++  A+A + F+Y
Sbjct: 180 MGM-DVRLCAPRACWPHDDIQQEAQRIASTTGARITITEDIDSAVAGVDFVY 230


>gi|229820816|ref|YP_002882342.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566729|gb|ACQ80580.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 281

 Score = 36.2 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 10/145 (6%)

Query: 6   PQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            +L  +A    ++L  P    N+G + R++       + +          +A  +S  + 
Sbjct: 116 RRLDAAADFLGVLLDRPSSPGNVGTIIRSVDALGGHAVVVTGHATDPYDPQAVRASTGSV 175

Query: 66  CVIDSVRVFSNLK--EAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                V + S     E +  +  +     R       ++A  E A            V +
Sbjct: 176 F---GVPIVSAAAPREVLEWVDGV-----RRAGVPLRLVATDERAERDVWDHDLTGPVLL 227

Query: 124 IFGRERWGLTNEEIALSNAIISFPV 148
           + G E  GL+      ++ ++  P+
Sbjct: 228 LTGNETTGLSQAWRDAADDVVRIPM 252


>gi|213583507|ref|ZP_03365333.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 119

 Score = 36.2 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 19/122 (15%)

Query: 54  SEKARSSS-ANADCV--IDSVRVFSNLKEAIADLHFIYATTA-RNRNNFKSVLAPKEAAI 109
           S  A  ++   A+ V  I    +   L +     + +  T++ R +  F + L       
Sbjct: 10  SGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLP------ 63

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECM 169
                    + + ++ GRE   L        +  +         SLN+S A  +++ E  
Sbjct: 64  ---------EKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWW 114

Query: 170 EN 171
             
Sbjct: 115 RQ 116


>gi|148977755|ref|ZP_01814311.1| ornithine carbamoyltransferase [Vibrionales bacterium SWAT-3]
 gi|145962969|gb|EDK28239.1| ornithine carbamoyltransferase [Vibrionales bacterium SWAT-3]
          Length = 333

 Score = 36.2 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 20/72 (27%)

Query: 26  EN---IGMVARAMWNFNLTQLRLVNPRDGWPSE------KARSSSANADCVIDSVRVFSN 76
            N   +G          +  +RLV P+  WP +      +A + S  A   +       +
Sbjct: 171 GNSLLVGAA----K-MGM-DIRLVAPKAFWPEDQLVEECQAIAQSTGAKITL-----TED 219

Query: 77  LKEAIADLHFIY 88
           + E +    F+Y
Sbjct: 220 VAEGVKGCDFLY 231


>gi|295676810|ref|YP_003605334.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
 gi|295436653|gb|ADG15823.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
          Length = 262

 Score = 36.2 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 16/153 (10%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVF 74
            ++L   Q   N+G + R+     +       P   +  S K   S   A  ++   ++ 
Sbjct: 115 CLVLDGVQDAGNVGSILRSAAAAGIEH-VFCAPGTAYAWSSKVLRSGMGAHFLL---QIH 170

Query: 75  SNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            ++             +A        +                 + +  +FG E  G++ 
Sbjct: 171 EDVDA-----------SALIERLAVPIAITDSHGAEAIYDCDLSRPLAWVFGNEGAGVSQ 219

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWE 167
                 +  ++ P      SLN++ A  + V+E
Sbjct: 220 VWRDAVSLRVTIPQPGGMESLNVAAAAAVCVFE 252


>gi|152968115|ref|YP_001363899.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151362632|gb|ABS05635.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 212

 Score = 36.2 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 10  NSAKGPVIILVDP-QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA---D 65
           ++ + P+ + V+  Q   NIG V R   N        VN        + R +   A   D
Sbjct: 57  DTRRNPLHVAVENWQHDANIGSVVRT-AN-------AVNAAGAHVVGRKRWNRRGAMVTD 108

Query: 66  CVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
             + +V    ++ + +A         AR R      +   E ++ L E     +   ++F
Sbjct: 109 RYL-TVHHHGDVADLVA--------WARERGLPIVGIDNVEGSVPL-ETYDLPRECVLLF 158

Query: 126 GRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
           G+E  GL+ E +A    +++        SLN+ 
Sbjct: 159 GQEGPGLSEEAVAACVDVLAIAQFGSTRSLNVG 191


>gi|209966676|ref|YP_002299591.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
 gi|209960142|gb|ACJ00779.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
          Length = 153

 Score = 36.2 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVK 181
           ++ GRE  G   E  A  +A +  P++P   SLN++ A  +++ E +  +   +     
Sbjct: 95  LLLGRESAGTPPEVAAACHAAVHIPMHPGARSLNVAIAAAMVLGEALRQTRAWTHAPAG 153


>gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2]
 gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0860]
 gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2]
 gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0860]
          Length = 258

 Score = 36.2 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 108 AIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
           A +      + +N  +I G E  G+  E +A +   +  P+     SLN++ A  ++++
Sbjct: 194 AAIAYYEQEAVENYALILGNEGSGVLPELLAETTKNLYIPMKGQAESLNVAIAAGVLMF 252


>gi|325001131|ref|ZP_08122243.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia sp. P1]
          Length = 228

 Score = 36.2 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              NIG V R    F    + +V  R  W    A  +    D  + S+         +A 
Sbjct: 88  HDHNIGTVVRTANAFGAGGVHIVG-RRRWNRRGAMVT----DRYL-SLHHHPGAAGLVA- 140

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                   AR        +     A+ L E     ++  ++FG E  GL+ E    ++  
Sbjct: 141 -------HARAAGLALVAVDNLPGAVRLEETALP-RDCVLVFGAEGPGLSPELREAADLA 192

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECME 170
           +S        S+N   A  +++   + 
Sbjct: 193 VSIAQFGSTRSINAGVAAGIVMHAWVR 219


>gi|317494194|ref|ZP_07952610.1| ornithine carbamoyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917967|gb|EFV39310.1| ornithine carbamoyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 335

 Score = 36.2 bits (83), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 12/57 (21%)

Query: 38  FNLTQLRLVNPRDGWPSEK------ARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
             + +LRLV P+  WP  +      A +    A  V+       +L E + D  F+Y
Sbjct: 180 MGM-ELRLVAPKACWPEAELVAQCQAIADKTGAKLVL-----TEDLAEGVKDADFLY 230


>gi|226307622|ref|YP_002767582.1| hypothetical protein RER_41350 [Rhodococcus erythropolis PR4]
 gi|226186739|dbj|BAH34843.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 284

 Score = 36.2 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 17/106 (16%)

Query: 33  RAMWNF----NLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
           R M        L     V+P              +    +    V S++ EA +DL    
Sbjct: 107 RVMTTMMARDGLP----VDPDQILADAGPSVGRPHVAAALMRAGVVSSISEAFSDL---- 158

Query: 89  ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW--GL 132
             ++R R +      P E A+ L     +G    +  GR R   GL
Sbjct: 159 -LSSRGRYDVPKYDTPLEYAVELV--AAAGGVTVLAHGRARSRGGL 201


>gi|221065223|ref|ZP_03541328.1| aspartate carbamoyltransferase [Comamonas testosteroni KF-1]
 gi|264680113|ref|YP_003280022.1| aspartate carbamoyltransferase [Comamonas testosteroni CNB-2]
 gi|299534056|ref|ZP_07047408.1| aspartate carbamoyltransferase catalytic subunit [Comamonas
           testosteroni S44]
 gi|220710246|gb|EED65614.1| aspartate carbamoyltransferase [Comamonas testosteroni KF-1]
 gi|262210628|gb|ACY34726.1| aspartate carbamoyltransferase [Comamonas testosteroni CNB-2]
 gi|298717965|gb|EFI58970.1| aspartate carbamoyltransferase catalytic subunit [Comamonas
           testosteroni S44]
          Length = 320

 Score = 36.2 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 14/62 (22%)

Query: 31  VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           VAR    A+      ++R+V PR   PS+ A             VRVF NL+E I D   
Sbjct: 182 VARSDIHALTTLGAAEVRVVGPRTLVPSDMASM----------GVRVFHNLEEGIKDCDV 231

Query: 87  IY 88
           I 
Sbjct: 232 II 233


>gi|327351571|gb|EGE80428.1| RNA methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 596

 Score = 36.2 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 41/188 (21%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCV-----------IDSV 71
             N+G + R+ + F +    +V+ R+  P      ++S+  A+ +           + + 
Sbjct: 401 EGNVGAIIRSAYYFGVDS-IIVSTRNSAPISAVVIKASAGAAENIPILTTTNPTNFLKNT 459

Query: 72  R-----VFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           R     +F+    A A      + T+       + +L+ ++ +  L+E         ++ 
Sbjct: 460 RMNGWKIFAAEAPAAASASQQTFGTS------NEQILSRRDVSTKLSE-----APCILML 508

Query: 126 GRERWGLTNEEIALSNAIISFPVN---------PLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  GL       ++  +  P               SLN+S A  L+  E       S+
Sbjct: 509 GSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC-EAFLGDPSST 567

Query: 177 EKNVKEQN 184
            +      
Sbjct: 568 GQGRSPAE 575


>gi|269218069|ref|ZP_06161923.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213004|gb|EEZ79344.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 238

 Score = 36.2 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 24/160 (15%)

Query: 1   MTPYAPQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS 60
           + P    LQ + +             NIG + R    FN++ + +V  R  W  + A  +
Sbjct: 88  LAPSRAALQIAIENLA-------HDLNIGSIVRTGNAFNVSGVHVVG-RKRWNRKGALVT 139

Query: 61  SANADCVIDSVRVFSNLKEAIA-DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
                 V     V   ++ A A D   +             V  P        E     +
Sbjct: 140 -DRYVDVFHRPEVRDVVEWARANDYAMVA------------VDNP--PGSAALEETRLPE 184

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
              ++FG+E  G++ E +A  +  +         S+N++ 
Sbjct: 185 RCLLVFGQESSGISPELLAACDFAVRIEQYGSTRSMNVAA 224


>gi|260578510|ref|ZP_05846422.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603349|gb|EEW16614.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 227

 Score = 36.2 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 15/152 (9%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG V R    F +  + +V  R  W    A  +      +     V   L+ A  +   
Sbjct: 90  NIGTVVRTANAFAVDTVHIVG-RRRWNRRGAMVT-DRYQHLQHHATVGEVLEFAAREGLV 147

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
           + A       +      P E A +        +   ++FG+E  G+T E    +   +S 
Sbjct: 148 VVAV------DNTPGCVPLETAEL-------PERCLLLFGQEGPGVTQEAQDAARMTVSI 194

Query: 147 PVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
                  S+N   A  + +   +      S+ 
Sbjct: 195 AQFGSTRSINAGVAAGIAMHAWIRQHADLSQA 226


>gi|311113957|ref|YP_003985178.1| SpoU rRNA methylase [Gardnerella vaginalis ATCC 14019]
 gi|310945451|gb|ADP38155.1| SpoU rRNA methylase [Gardnerella vaginalis ATCC 14019]
          Length = 99

 Score = 36.2 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 23/57 (40%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVS 175
           +   ++FG E  GL+ + + +++ ++         SLN   A  + +   +      
Sbjct: 41  KRCLMLFGAEGPGLSKKALKMADDVVYISQFGSVRSLNAGAAAAVSMHAWIAQHAAP 97


>gi|34762811|ref|ZP_00143797.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887513|gb|EAA24597.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 187

 Score = 36.2 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 73  VFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V  ++++ I ++         I  T+AR  +N  S          L+++IF      ++ 
Sbjct: 87  VTESIEDVIKEIEKIEGQKPLIITTSARTFDNSISY-------KDLSKQIFENDKPYLLL 139

Query: 126 GRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
               WGLT+E +A+S+ I+        +  L++  AV +++
Sbjct: 140 FGTGWGLTDEVMAMSDYILEPIRAKSKYNHLSVRAAVAIIL 180


>gi|224010707|ref|XP_002294311.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220970328|gb|EED88666.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 253

 Score = 36.2 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 38/182 (20%)

Query: 14  GPVIIL-----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           GP++ L     VDPQ   N+G + R+ +        LV  ++  P     S+++     +
Sbjct: 87  GPLVWLALDEVVDPQ---NLGALLRSAYFLGGRVGILVCSKNSSPLTTTVSAASAGA--L 141

Query: 69  DSVRVFSN--LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL--NERIFSGQNVGII 124
           + + V+S   L + +           R R +   VL             R  +G+   ++
Sbjct: 142 EFMTVYSTSNLPKMLN----------RAREDGWRVLGAAADIPDSGGAARSETGKPTILV 191

Query: 125 FGRERWGLTNEEIALSNAIISFP--------------VNPLFPSLNISQAVLLMVWECME 170
            G E  GL        +  +  P                    SLN+S    +++W  + 
Sbjct: 192 LGSEGRGLRTWVARSCSGFVKVPGGLNMAASDNDEDATQAGVDSLNVSVTGGILLWHFLS 251

Query: 171 NS 172
           N 
Sbjct: 252 NQ 253


>gi|146299225|ref|YP_001193816.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153643|gb|ABQ04497.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 242

 Score = 36.2 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 23/165 (13%)

Query: 13  KGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR 72
            G ++ L D +   N+G + R    F + Q+          + K   ++  +   I  V 
Sbjct: 96  SGLILALDDIRDPGNLGTIMRLCDWFGIKQIVCSKETVDIYNPKVVQATMGS---IARVN 152

Query: 73  V-FSNLKEAIADLHF-IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERW 130
           V + +LK  ++     ++ T                    + +       + II G E  
Sbjct: 153 VNYVDLKAFLSQTKLPVFGT--------------FMDGDTIYQSNLPQNGI-IIMGNEAN 197

Query: 131 GLTNEEIALSNAIISFPVNPLFP---SLNISQAVLLMVWECMENS 172
           G++ E   +    ++ P         SLN++ A  +++ E   NS
Sbjct: 198 GISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIILSEFKRNS 242


>gi|326497613|dbj|BAK05896.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 344

 Score = 36.2 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 16/76 (21%)

Query: 14  GPVIILVDPQLGENIGMVA------RAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
            P IILV   +G   G VA      RA+ N  L  L +V+         A +S  +   +
Sbjct: 144 PPAIILVGHSMG---GSVAVHVAARRAIHN--LHGLVVVD----VVEGTAIASLIHMQKI 194

Query: 68  -IDSVRVFSNLKEAIA 82
            ++  + F ++++AI 
Sbjct: 195 LLNRAQHFPSIEKAIE 210


>gi|254468840|ref|ZP_05082246.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
 gi|207087650|gb|EDZ64933.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
          Length = 257

 Score = 36.2 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
               +I G E  G+T +   +++  IS P+     SLN++ +  ++ ++ +  
Sbjct: 202 HKTILILGSEGQGVTTKLKDIAHDEISLPMMNNVESLNVAVSAAIIGYQFLNQ 254


>gi|50085696|ref|YP_047206.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531672|emb|CAG69384.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 266

 Score = 36.2 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +    I G E  G +   ++ + AI + P      SLN++ A  +  +E +   
Sbjct: 213 KPCVWILGNEGQGASEYALSHAQAI-TIPQPGGQESLNVAIAGSICFFEMVRQR 265


>gi|19703627|ref|NP_603189.1| hypothetical protein FN0282 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296329434|ref|ZP_06871923.1| tRNA (guanine-N1)-methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|19713737|gb|AAL94488.1| Hypothetical protein FN0282 [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296153443|gb|EFG94273.1| tRNA (guanine-N1)-methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 187

 Score = 36.2 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 73  VFSNLKEAIADLH-------FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           V  +++  + ++         I  T+AR  NN  S          L+++IF      ++ 
Sbjct: 87  VTESIEAVVEEIEKIEGQKPLIITTSARIFNNSISY-------KNLSKQIFEDDKPYLLL 139

Query: 126 GRERWGLTNEEIALSNAIIS-FPVNPLFPSLNISQAVLLMV 165
               WGLT+E +A+S+ I+     N  +  L++  AV +++
Sbjct: 140 FGTGWGLTDEVMAMSDYILEPIRANSKYNHLSVRAAVAIIL 180


>gi|326514680|dbj|BAJ99701.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326528355|dbj|BAJ93359.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 344

 Score = 36.2 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 16/76 (21%)

Query: 14  GPVIILVDPQLGENIGMVA------RAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCV 67
            P IILV   +G   G VA      RA+ N  L  L +V+         A +S  +   +
Sbjct: 144 PPAIILVGHSMG---GSVAVHVAARRAIHN--LHGLVVVD----VVEGTAIASLIHMQKI 194

Query: 68  -IDSVRVFSNLKEAIA 82
            ++  + F ++++AI 
Sbjct: 195 LLNRAQHFPSIEKAIE 210


>gi|322499556|emb|CBZ34630.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 468

 Score = 36.2 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
             V ++ G E  GL+ E     N     P      SL++  A+ +        ++   E+
Sbjct: 133 AGVELVLGMEN-GLSQEVADACNLCTYIPQYGSVGSLSMLSALAIAAHSTWRAAV--REE 189

Query: 179 NVKEQNTPATKGELLS 194
                 + A    L  
Sbjct: 190 GNTSDTSLAPHRALHG 205


>gi|313898435|ref|ZP_07831972.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
 gi|312956817|gb|EFR38448.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
          Length = 243

 Score = 36.2 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 54/162 (33%), Gaps = 28/162 (17%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCVIDSVRVFSNLKEA 80
           +   N G + R ++      + +  P   W +       +SA A   ++   + +   EA
Sbjct: 101 EDPFNFGYILRTLYAAGCDGVII--PPRNWTTAAGVVTKASAGASEYLN--LIVATDMEA 156

Query: 81  I------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
           +      AD+  I A         K  ++  + A  L         + +  G E  GL+ 
Sbjct: 157 LLHEMKQADIQLICA-------QRKDAISLYDYAFPL--------KLCLAIGGEMRGLSK 201

Query: 135 EEIALSNAIISFPVNPLFP-SLNISQAVLLMVWECMENSIVS 175
                S+  +  P    F  ++  + +  +  +E +      
Sbjct: 202 HVQNHSDQNLFIPYRQDFRNAMTAAASTAIFAFELVRQKTAD 243


>gi|285019054|ref|YP_003376765.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474272|emb|CBA16773.1| putative trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 277

 Score = 36.2 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 54/170 (31%), Gaps = 35/170 (20%)

Query: 3   PYAPQLQNSAKGPVIIL----VDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR 58
           P A  L+  A GP + L    V      N G + R+  +F    + L       P     
Sbjct: 111 PLADWLRTLAPGPALALWLDGVG--NPHNFGAILRSAAHFGAAAILL-------PEGATL 161

Query: 59  SSSANADCVIDS-VRVFSNL-----KEAIADL---HFIYATTARNRNNFKSVLAPKEAAI 109
           + S  A  V +        +      +A+A L    F  A T              E   
Sbjct: 162 ALSGAAARVAEGGAEAVPLVRLPAPAQALAQLRNADFALAATL------------VEGGD 209

Query: 110 VLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            L       Q +  + G ER G+        +  +S P +    SLN++ 
Sbjct: 210 ALFATALP-QRLIYVMGAERDGMDRGFAQACDLRLSIPGSGAVESLNVAA 258


>gi|78063386|ref|YP_373294.1| uncharacterized peroxidase [Burkholderia sp. 383]
 gi|77971271|gb|ABB12650.1| uncharacterized peroxidase [Burkholderia sp. 383]
          Length = 197

 Score = 36.2 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 26/124 (20%)

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +S +A       +    +++   D      TTAR R   +  +A  E    ++ R  +  
Sbjct: 97  ASVHAQRFTQLAKRTDAIEQVFDDPGTA-GTTARERAIIRYAIALTERPDTVDARDIAAL 155

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
                   E  GLT+EEI                 L++S AV +  W       +     
Sbjct: 156 --------EAEGLTHEEI-----------------LDLSHAVAIFAWANRLMLTLGEPVF 190

Query: 180 VKEQ 183
            +  
Sbjct: 191 PEPA 194


>gi|327479282|gb|AEA82592.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 413

 Score = 36.2 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 199 LEISLEERGY--FRPV--EKKKKMLDDLYSIFIRPELMREEVFL-LR------GIVSTLD 247
           LE S+ E G+    P   ++   M   +  +F R      +V   LR      GI S ++
Sbjct: 222 LETSMCELGFAELDPALAQRLDSMKRLIAQLFQRVR----DVATALRPPILDAGIASAVE 277

Query: 248 KFSRQSSRRNNVL 260
             +R+   R+ V 
Sbjct: 278 WQARRFEERSGVA 290


>gi|118462459|ref|YP_883915.1| spou rRNA methylase family protein [Mycobacterium avium 104]
 gi|118163746|gb|ABK64643.1| spou rRNA methylase family protein [Mycobacterium avium 104]
          Length = 214

 Score = 36.2 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 15/148 (10%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              NIG V R    F +  + +V  R  W    A  +          +    +  E +  
Sbjct: 74  HDANIGSVVRTANAFAVHTVHIVG-RRRWNRRGAMVT-----DRYQRLCHHDSTAELLD- 126

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
               +A TA         +     A  L E     +   ++FG+E  G+T++    +   
Sbjct: 127 ----FAATA---GLTVVAVDNVPGAARLEETTLP-RECLLVFGQEGPGITDDTRTGATLT 178

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        S+N   A  + +   ++ 
Sbjct: 179 VSIAQFGSTRSINAGVAAGIAMHAWIQQ 206


>gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta]
          Length = 430

 Score = 35.8 bits (82), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 10  NSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI 68
           N A    II  + +   N+G + RA       +L L+         K   S+  A   +
Sbjct: 194 NDAIPLTIICDNIREPGNLGSILRAAAAVGCEKLLLMKGCVDLWEPKVVRSATGAHFRL 252


>gi|108797462|ref|YP_637659.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119866547|ref|YP_936499.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108767881|gb|ABG06603.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119692636|gb|ABL89709.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 214

 Score = 35.8 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 15/143 (10%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NIG V R    F +  + +V  R  W    A  +          +R   +  E + D  
Sbjct: 76  ANIGSVVRTANAFAVDTVHIVG-RRRWNRRGAMVT-----DRYQRLRHHDSTAELL-DFA 128

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                TA   +N            V  E     +   +IFG+E  G+T +    +   +S
Sbjct: 129 AEAGLTAVAVDNIP--------GAVPLEHTDLPRECLLIFGQEGPGITEDAKTGARLTVS 180

Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
                   S+N + A  + +   
Sbjct: 181 IAAFGSTRSINAAVAAGIAMHTW 203


>gi|160897028|ref|YP_001562610.1| aspartate carbamoyltransferase catalytic subunit [Delftia
           acidovorans SPH-1]
 gi|238687205|sp|A9BY86|PYRB_DELAS RecName: Full=Aspartate carbamoyltransferase; AltName:
           Full=Aspartate transcarbamylase; Short=ATCase
 gi|160362612|gb|ABX34225.1| aspartate carbamoyltransferase [Delftia acidovorans SPH-1]
          Length = 320

 Score = 35.8 bits (82), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 31  VAR----AMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           VAR    A+      ++R+V PR   P + A+            VRVF  L+E I D   
Sbjct: 182 VARSDIHALTTLGAAEVRVVGPRTLVPPDLAQM----------GVRVFHTLEEGIRDCDV 231

Query: 87  IY 88
           I 
Sbjct: 232 II 233


>gi|296394021|ref|YP_003658905.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181168|gb|ADG98074.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 221

 Score = 35.8 bits (82), Expect = 5.8,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 19/164 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN 76
           +++ +     NIG V R    F    + +V  R  W    A  +          V   + 
Sbjct: 74  VVIENLAHDANIGTVVRTANAFLAQAVHIVG-RRRWNRRGAMVT-----DRYQHVHHHAT 127

Query: 77  LKEAIADLHFIYATTAR--NRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
            +E            AR    ++   V           E     +   ++FG+E  GL+ 
Sbjct: 128 PEEF-----------ARYAQAHHLAVVAVDNTHGAEPVETFALPRRCALLFGQEGSGLSP 176

Query: 135 EEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           E  A++ + ++        S+N+  A  +++   +       ++
Sbjct: 177 ELRAIAQSAVAIAQFGSTRSINVGVAAGVVMHTWIVQHADLDQR 220


>gi|330797178|ref|XP_003286639.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum]
 gi|325083387|gb|EGC36841.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum]
          Length = 1558

 Score = 35.8 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 119  QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
            +   ++ G+E+ G+    + + +  +  P      SLN+  +  +++WE 
Sbjct: 1499 EKCLLLLGQEQNGIPANYLTIVDYCVEIPQLGQIRSLNVHVSASIVIWEY 1548


>gi|254777225|ref|ZP_05218741.1| spou rRNA methylase family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 218

 Score = 35.8 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 15/148 (10%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              NIG V R    F +  + +V  R  W    A  +          +    +  E +  
Sbjct: 78  HDANIGSVVRTANAFAVHTVHIVG-RRRWNRRGAMVT-----DRYQRLCHHDSTAELLD- 130

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
               +A TA         +     A  L E     +   ++FG+E  G+T++    +   
Sbjct: 131 ----FAATA---GLTVVAVDNVPGAARLEETTLP-RECLLVFGQEGPGITDDTRTGATLT 182

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        S+N   A  + +   ++ 
Sbjct: 183 VSIAQFGSTRSINAGVAAGIAMHAWIQQ 210


>gi|119026478|ref|YP_910323.1| hypothetical protein BAD_1460 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118766062|dbj|BAF40241.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 304

 Score = 35.8 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 23/59 (38%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSE 177
           +   ++FG E  GL+ + + L++ ++         S+N   A  + +   +        
Sbjct: 246 KRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIAQHAAPHA 304


>gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 257

 Score = 35.8 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         + L        + K   +   +   ++   +  +L E +A
Sbjct: 119 QDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLE--VLNGDLSEWVA 176

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV------GIIFGRERWGLTNEE 136
                 AT      N   V         LNE+  S ++V      G+I G E  G++ E 
Sbjct: 177 ----ALAT------NNLPV-----YGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAEL 221

Query: 137 IALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
              + A +  P+     SLN++ A  ++++  
Sbjct: 222 AEKTTANLYIPIQGQAESLNVAIAGGILMFSL 253


>gi|297181103|gb|ADI17301.1| rRNA methylases [uncultured actinobacterium HF0070_17F14]
 gi|297181194|gb|ADI17389.1| rRNA methylases [uncultured Verrucomicrobiales bacterium
           HF0070_30L02]
          Length = 254

 Score = 35.8 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 19/120 (15%)

Query: 55  EKARSSSANA---DCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVL 111
            KA  +SA +     ++   ++   +         +  T       F             
Sbjct: 151 PKAVRASAGSMLRVPIVQYDQLDDTVDALREAGVTVVGTDVTGGEPF------------- 197

Query: 112 NERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
            ++    + V I+ G E  GL    + L +A     +     SLN++ A  L+++E    
Sbjct: 198 -DQGVLDRPVAIVMGSEPHGLDRG-VDL-DAWAHIAMPGRTESLNVAMAGTLLLYEASRG 254


>gi|157413860|ref|YP_001484726.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388435|gb|ABV51140.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 276

 Score = 35.8 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 16  VIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS 75
           V++L   Q   N+G + R      +  + L         +K   +S+ A   +  +R F 
Sbjct: 113 VLVLDRIQDPGNMGSLFRTALAAGVDAIFLAG-GAHPLGQKVLRASSGAVFHLPFLR-FD 170

Query: 76  NLKEAIAD-----------LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGII 124
             +E I +           + F   +T+ N  + K               +   ++  +I
Sbjct: 171 GTEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSK-------KPSKPYWEVDWSRSTALI 223

Query: 125 FGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS-QAVLLMV 165
            G E  G+  +     N  I+ P + L  SLN++  AV L++
Sbjct: 224 LGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVAVPLLL 265


>gi|303326589|ref|ZP_07357032.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           3_1_syn3]
 gi|302864505|gb|EFL87436.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           3_1_syn3]
          Length = 108

 Score = 35.8 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
              ++ G E  GL          ++  P+   F SLN++Q
Sbjct: 50  PAVLVLGNEDKGLRPGVAKRCAHMLRIPLARPFDSLNVAQ 89


>gi|260425256|ref|ZP_05779236.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
 gi|260423196|gb|EEX16446.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
          Length = 278

 Score = 35.8 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 17/157 (10%)

Query: 7   QLQNSAKGPVIILV-DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANAD 65
            + +    P ++L+       N+G + R+   F       V       + +  + +  A 
Sbjct: 122 AMGDGETPPRLVLLDRVTDPHNVGAILRSAEVFGAQ---AVIGTQHHAAPETGALAKTAS 178

Query: 66  CVIDSVRVFSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSG---QNV 121
             ++       L+E  +AD      T    +     VL     A    E    G   + V
Sbjct: 179 GALERQ---PYLRERNLAD------TIRALQEMGYLVLGLDGEADTTIETALEGMRDRAV 229

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNIS 158
            ++ G E  GL  +     + ++       F SLN+S
Sbjct: 230 ALVLGAEGPGLREKTKETVDRLVRIEFARSFGSLNVS 266


>gi|254523202|ref|ZP_05135257.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Stenotrophomonas sp. SKA14]
 gi|219720793|gb|EED39318.1| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
           [Stenotrophomonas sp. SKA14]
          Length = 393

 Score = 35.8 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 19/121 (15%)

Query: 30  MVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVI---DSVRVFSNLKE-----AI 81
             AR      L +LRLV+PR  +P  +  +    A  V+   D+  V   L        +
Sbjct: 253 FAAR------LGELRLVSPRAAFPLRRQLARHYVAGRVLALGDAAHVVHPLAGQGVNLGL 306

Query: 82  ADLHFI---YATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIA 138
            D+  +    A +A  R   +  L+P+       ER          F       +N+E+ 
Sbjct: 307 RDVAALQQWLAPSAARRGQPR--LSPQRLQRWARERRSDNHIAAYSFDAINRLFSNDEMH 364

Query: 139 L 139
           L
Sbjct: 365 L 365


>gi|150397809|ref|YP_001328276.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150029324|gb|ABR61441.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 275

 Score = 35.8 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 28/176 (15%)

Query: 2   TPYAPQLQNSAKGPVIIL--VDPQLGENIGMVARAMWNFNLTQLRLVN-PRDGWPSEKAR 58
            P    L        ++L        +N+G + R    F      L++         KA 
Sbjct: 112 APEQEALIAGLPQSSLVLAACGISNHDNMGSLFRNAAAFG-ADAVLMDMASCDPMYRKAI 170

Query: 59  SSSANADCVI------DSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLN 112
             S  +   +       +  +   L+ A     F+              L+P+    V  
Sbjct: 171 RVSVGSVLTLPFAREGGAAELIGRLQAA----DFVV-----------WGLSPR--GAVDI 213

Query: 113 ERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWEC 168
             I       ++ G E  GL    ++  +        P   SLN++ A  + + + 
Sbjct: 214 TAIPPAPRTALLVGTEGEGLPEAILSQIHTA-RIRQRPGLDSLNVAMAAGIALHQV 268


>gi|212715379|ref|ZP_03323507.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661685|gb|EEB22260.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM
           16992]
          Length = 227

 Score = 35.8 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 23/58 (39%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   ++FG E  GL+ + + L++ ++         S+N   A  + +   +       
Sbjct: 169 KRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIAQHAAPQ 226


>gi|149921296|ref|ZP_01909751.1| hypothetical protein PPSIR1_26353 [Plesiocystis pacifica SIR-1]
 gi|149817843|gb|EDM77306.1| hypothetical protein PPSIR1_26353 [Plesiocystis pacifica SIR-1]
          Length = 550

 Score = 35.8 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 46  VNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEA-IADLHFIYATTARNRNNFKSVLAP 104
            +P    P E    +S  AD +    +VF    EA  AD        +  R+   + L  
Sbjct: 318 CDPCPVPPLEAKDLASLGADVIPSYAQVF---AEARTADGVDPNLLASVGRDFVLTRLHA 374

Query: 105 KEAAIVLNERIFSGQNVGIIFGRERWGLTNE 135
           + +   L E +       +  GRERWG  NE
Sbjct: 375 RYSPDSLGEDLVFQAAPALTGGRERWGADNE 405


>gi|218528712|ref|YP_002419528.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
 gi|218521015|gb|ACK81600.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
          Length = 149

 Score = 35.8 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 25/160 (15%)

Query: 19  LVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFS--- 75
           L  P + +N G + R      +  + ++ P     S++    S      +D V +     
Sbjct: 6   LYQPDIPQNTGTMLRMSACLGIA-VEIIEPAGFDVSDRHLRRS--GLDYLDHVAITRHRS 62

Query: 76  -NLKEAIA---DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWG 131
            +  EA     D+  + ATT  +    +      +                ++ GRE  G
Sbjct: 63  WDAFEAWRRETDIRLVLATTTGSVPYTQHAFRDGDC---------------LLMGRESAG 107

Query: 132 LTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +     A ++A +  P+ P   SLN++    +M+ E +  
Sbjct: 108 VPEAVHAAADARVVVPIRPGLRSLNVAICAAMMLGEAIRQ 147


>gi|311696878|gb|ADP99751.1| ornithine carbamoyltransferase [marine bacterium HP15]
          Length = 333

 Score = 35.8 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 38  FNLTQLRLVNPRDGWP----SEKARSSSA--NADCVIDSVRVFSNLKEAIADLHFIY 88
             +  +RL  P+  WP     E+A++ +A   A      + +  ++  A+A + F+Y
Sbjct: 180 MGM-DVRLCAPKACWPGQAVQEEAQALAAETGAR-----ITITEDVDAAVAGVDFVY 230


>gi|294790555|ref|ZP_06755713.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
 gi|294458452|gb|EFG26805.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
          Length = 276

 Score = 35.8 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 27  NIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHF 86
           NIG + R    F    + ++ P     + K    +     +  SV  ++++ E      F
Sbjct: 139 NIGSIVRTANAFTARGVHIIGPHKW--NRKGSLMT----ELYQSVDYYASIDE------F 186

Query: 87  IYATTARNRNNFKS----VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           ++A   R++ + +      L     A+ +    F  Q + ++FG E  GLT+  + +++ 
Sbjct: 187 VHAVRTRDQESGQHTRLIALDIVPGAVPIESYQFPEQCI-LLFGAEGPGLTSRALEIADD 245

Query: 143 IISFPVNPLFPSLN 156
           ++         SLN
Sbjct: 246 VVYITQYGSVRSLN 259


>gi|225559060|gb|EEH07343.1| RNA methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 462

 Score = 35.8 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 58/191 (30%), Gaps = 45/191 (23%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAI--- 81
             N+G + R+ + F +  + L        S  A  +SA A    +++ + +     +   
Sbjct: 266 EGNVGAIIRSAYYFGVDAIILSTRNSAPISAVAVKASAGAA---ENIPILTTTNPTLFLK 322

Query: 82  ------------------ADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGI 123
                                    +T+A        +L+ ++    LNE         +
Sbjct: 323 NTHMNGWKFFAAEAPAAAIASQQSLSTSAEQ------ILSRRDVKSKLNES-----PCIL 371

Query: 124 IFGRERWGLTNEEIALSNAIISFPVN---------PLFPSLNISQAVLLMVWECMENSIV 174
           + G E  GL       ++ ++  P               SLN+S A  L+  E       
Sbjct: 372 MLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSVASALLC-EAFLGDPS 430

Query: 175 SSEKNVKEQNT 185
           S+   +     
Sbjct: 431 STGPGLSSSEE 441


>gi|146281128|ref|YP_001171281.1| two-component sensor [Pseudomonas stutzeri A1501]
 gi|145569333|gb|ABP78439.1| probable two-component sensor [Pseudomonas stutzeri A1501]
          Length = 761

 Score = 35.8 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 199 LEISLEERGY--FRPV--EKKKKMLDDLYSIFIRPELMREEVFL-LR------GIVSTLD 247
           LE S+ E G+    P   ++   M   +  +F R      +V   LR      GI S ++
Sbjct: 570 LETSMCELGFAELDPALAQRLDSMKRLIAQLFQRVR----DVATALRPPILDAGIASAVE 625

Query: 248 KFSRQSSRRNNVL 260
             +R+   R+ V 
Sbjct: 626 WQARRFEERSGVA 638


>gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobacterium sp. JLS]
 gi|254806451|sp|A3Q6V9|Y5122_MYCSJ RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mjls_5122
 gi|126237486|gb|ABO00887.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. JLS]
          Length = 314

 Score = 35.8 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 17/171 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A    + A   ++ L +     N+G + R++  F    + +   R    +  A  +SA A
Sbjct: 156 ATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 215

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R  +    LK        +    A        +       +V+         +
Sbjct: 216 AARLPVARATNLNRTLKSWADGGLQVVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRL 275

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                RE            +A++S P+     SLN S A  +++ E     
Sbjct: 276 V----REN----------CDAVVSIPMAGPTESLNASVAAGVVLAEIARQR 312


>gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
 gi|119870850|ref|YP_940802.1| RNA methyltransferase [Mycobacterium sp. KMS]
 gi|123368666|sp|Q1B2P4|Y4736_MYCSS RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736
 gi|254803958|sp|A1UMF4|Y4822_MYCSK RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mkms_4822
 gi|108772118|gb|ABG10840.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
 gi|119696939|gb|ABL94012.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. KMS]
          Length = 314

 Score = 35.8 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 17/171 (9%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANA 64
           A    + A   ++ L +     N+G + R++  F    + +   R    +  A  +SA A
Sbjct: 156 ATAKADGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGA 215

Query: 65  DCVIDSVRVFS---NLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
              +   R  +    LK        +    A        +       +V+         +
Sbjct: 216 AARLPVARATNLNRTLKSWADGGLQVVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRL 275

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                RE            +A++S P+     SLN S A  +++ E     
Sbjct: 276 V----REN----------CDAVVSIPMAGPTESLNASVAAGVVLAEIARQR 312


>gi|171742048|ref|ZP_02917855.1| hypothetical protein BIFDEN_01152 [Bifidobacterium dentium ATCC
           27678]
 gi|283456825|ref|YP_003361389.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|171277662|gb|EDT45323.1| hypothetical protein BIFDEN_01152 [Bifidobacterium dentium ATCC
           27678]
 gi|283103459|gb|ADB10565.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
          Length = 320

 Score = 35.8 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   ++FG E  GL+ + + L++ ++         S+N   A  + +   +    V  
Sbjct: 262 KRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIAQHAVPR 319


>gi|116695967|ref|YP_841543.1| indigoidine synthase A like protein [Ralstonia eutropha H16]
 gi|113530466|emb|CAJ96813.1| indigoidine synthase A like protein [Ralstonia eutropha H16]
          Length = 336

 Score = 35.8 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           V   +E   ++ +       + +I GR R GL+N+E+ L
Sbjct: 65  VRTAREVEALIRDLGAEPATIALIGGRIRIGLSNDELEL 103


>gi|323448531|gb|EGB04428.1| hypothetical protein AURANDRAFT_72519 [Aureococcus anophagefferens]
          Length = 588

 Score = 35.8 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 31/131 (23%)

Query: 72  RVFSNLKEAIA--DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS--GQNVGIIFGR 127
           ++ ++  EA+   D H + A  AR+R         +  A    +R     G    +  G 
Sbjct: 223 KIAADFAEAVRRLDGHAVVAVAARSRA------DAEAFAARHCDRGVQCYGGYEAMFEGA 276

Query: 128 ERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPA 187
              G        ++A       P       + A      E +   +      + E+   A
Sbjct: 277 RDHG--------ADA-TYVATQPD------THA------ELVRALLARKMPTLCEKPLAA 315

Query: 188 TKGELLSFLDY 198
           T  E+ +  DY
Sbjct: 316 TFAEVEACYDY 326


>gi|261197279|ref|XP_002625042.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239595672|gb|EEQ78253.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
          Length = 522

 Score = 35.8 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 41/188 (21%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCV-----------IDSV 71
             N+G + R+ + F +    +V+ R+  P      ++S+  A+ +           + + 
Sbjct: 327 EGNVGAIIRSAYYFGVDS-IIVSTRNSAPISAVVIKASAGAAENIPILTTTNPTNFLKNT 385

Query: 72  R-----VFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           R     +F+    A A      + T+       + +L+ ++ +  L+E         ++ 
Sbjct: 386 RMNGWKIFAAEAPAAASASQQTFGTS------NEQILSRRDVSTKLSE-----APCILML 434

Query: 126 GRERWGLTNEEIALSNAIISFPVN---------PLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  GL       ++  +  P               SLN+S A  L+  E       S+
Sbjct: 435 GSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC-EAFLGDPSST 493

Query: 177 EKNVKEQN 184
            +      
Sbjct: 494 GQGRSPAE 501


>gi|254249060|ref|ZP_04942380.1| hypothetical protein BCPG_03918 [Burkholderia cenocepacia PC184]
 gi|124875561|gb|EAY65551.1| hypothetical protein BCPG_03918 [Burkholderia cenocepacia PC184]
          Length = 197

 Score = 35.8 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 26/107 (24%)

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +S +A       +    +++   D      TTAR R   +  +   E    + E   +  
Sbjct: 97  ASVHAQRFAQLAKRTDAIEQVFDD-PATAGTTARERAIVRYAITLTERPDAIGESDIAAL 155

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
                   E  GLT+EEI                 L++S A+ +  W
Sbjct: 156 --------EAEGLTHEEI-----------------LDLSHAIAIFAW 177


>gi|306824229|ref|ZP_07457599.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801726|ref|ZP_07695846.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552432|gb|EFM40349.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221668|gb|EFO77960.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 320

 Score = 35.4 bits (81), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%)

Query: 119 QNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSS 176
           +   ++FG E  GL+ + + L++ ++         S+N   A  + +   +    V  
Sbjct: 262 KRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIAQHAVPR 319


>gi|300869138|ref|ZP_07113736.1| Heat shock protein DnaJ-like protein (modular protein)
           [Oscillatoria sp. PCC 6506]
 gi|300332865|emb|CBN58934.1| Heat shock protein DnaJ-like protein (modular protein)
           [Oscillatoria sp. PCC 6506]
          Length = 517

 Score = 35.4 bits (81), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 1/64 (1%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   N+G + R         L L          K   SSA A   +     +  LK  I+
Sbjct: 118 QDPGNLGTIIRTAAAAGADGLWLSGDSVDLDHPKVLRSSAGAWFRLPMAVTYD-LKAEIS 176

Query: 83  DLHF 86
               
Sbjct: 177 RCQH 180


>gi|183980676|ref|YP_001848967.1| RNA methyltransferase [Mycobacterium marinum M]
 gi|183174002|gb|ACC39112.1| RNA methyltransferase [Mycobacterium marinum M]
          Length = 214

 Score = 35.4 bits (81), Expect = 7.4,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 15/148 (10%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              NIG V R    F +  + +V  R  W    A  +          +R   +  E +  
Sbjct: 74  HDANIGSVVRTANAFAVDTVHIVG-RRRWNRRGAMVT-----DRYQRLRHHDSTAELLE- 126

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
             F               +     A  L E     ++  ++FG+E  G+T++    +   
Sbjct: 127 --FAVGA-----GLTVVAVDNVPGAARLEETTLP-RDCLLVFGQEGPGITDDTRVGAVVT 178

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMEN 171
           +S        S+N   A  + +   +  
Sbjct: 179 VSIAQFGSTRSINAGVAAGIAMHAWIRQ 206


>gi|221197330|ref|ZP_03570377.1| alkylhydroperoxidase AhpD domain protein [Burkholderia multivorans
           CGD2M]
 gi|221204003|ref|ZP_03577021.1| alkylhydroperoxidase AhpD domain protein [Burkholderia multivorans
           CGD2]
 gi|221176169|gb|EEE08598.1| alkylhydroperoxidase AhpD domain protein [Burkholderia multivorans
           CGD2]
 gi|221183884|gb|EEE16284.1| alkylhydroperoxidase AhpD domain protein [Burkholderia multivorans
           CGD2M]
          Length = 196

 Score = 35.4 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 26/107 (24%)

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +S +A       +    +++   D      TTAR R   +  +A  E      + + +  
Sbjct: 97  ASVHAQRFAQLAKRTDAIEQVFDD-PATAGTTARERAIVRYAIALTERP----DAVGADD 151

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              +    E  GLT+EEI                 L++S AV +  W
Sbjct: 152 IAAL----EAEGLTHEEI-----------------LDLSHAVAIFAW 177


>gi|161521641|ref|YP_001585068.1| uncharacterized peroxidase-related enzyme [Burkholderia multivorans
           ATCC 17616]
 gi|189352193|ref|YP_001947820.1| alkylhydroperoxidase [Burkholderia multivorans ATCC 17616]
 gi|221210791|ref|ZP_03583771.1| alkylhydroperoxidase AhpD domain protein [Burkholderia multivorans
           CGD1]
 gi|160345691|gb|ABX18776.1| uncharacterized peroxidase-related enzyme [Burkholderia multivorans
           ATCC 17616]
 gi|189336215|dbj|BAG45284.1| alkylhydroperoxidase [Burkholderia multivorans ATCC 17616]
 gi|221169747|gb|EEE02214.1| alkylhydroperoxidase AhpD domain protein [Burkholderia multivorans
           CGD1]
          Length = 196

 Score = 35.4 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 26/107 (24%)

Query: 60  SSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQ 119
           +S +A       +    +++   D      TTAR R   +  +A  E      + + +  
Sbjct: 97  ASVHAQRFAQLAKRTDAIEQVFDD-PATAGTTARERAIVRYAIALTERP----DAVGADD 151

Query: 120 NVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
              +    E  GLT+EEI                 L++S AV +  W
Sbjct: 152 IAAL----EAEGLTHEEI-----------------LDLSHAVAIFAW 177


>gi|150396189|ref|YP_001326656.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027704|gb|ABR59821.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium medicae
           WSM419]
          Length = 291

 Score = 35.4 bits (81), Expect = 7.5,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 16/158 (10%)

Query: 5   APQLQNSAKGPVI-ILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSS--S 61
             +L+     P+I +L       N+G + R+   F+     L+      P+E    +  +
Sbjct: 132 HRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAG--ALITTMRHSPTESGVLAKSA 189

Query: 62  ANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNV 121
           + A  +I  +++ SNL + I +LH +   T    +     L          E  F+G  +
Sbjct: 190 SGALELIPYIQI-SNLADTIDELHALGFMTIGLDSEGPQPL----------EGTFAGDKI 238

Query: 122 GIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQ 159
            ++ G E  GL  +      A+    +     SLN+S 
Sbjct: 239 ALVLGSEGKGLRQKTRQTVKALARLDMPGAIKSLNVSN 276


>gi|320581168|gb|EFW95389.1| Ribose methyltransferase [Pichia angusta DL-1]
          Length = 378

 Score = 35.4 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 21  DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSN---- 76
           +     N+G + R+ +   +  + +        S     +S+ A   ++ + ++S+    
Sbjct: 226 EISDPHNMGAILRSAYFLGVDCIVVSERNCAPLSPVVSKTSSGA---LEFLPIYSSQKPL 282

Query: 77  --LKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTN 134
              +E+ ++   I ++ A + +     +  K+      +         ++ G E  G+  
Sbjct: 283 RFFEESRSNGWTIISSVAPSESGR---MGSKQIDADTLKGQLQNGPCMLVVGSEGQGIRT 339

Query: 135 EEIALSNAIISFPV-----NPLFPSLNISQAVLLMV 165
             +  S+ ++S        +    SLN S A  L++
Sbjct: 340 SLLQRSDFLVSVNSGRADLDESVDSLNASVATALLL 375


>gi|126433083|ref|YP_001068774.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126232883|gb|ABN96283.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 214

 Score = 35.4 bits (81), Expect = 7.6,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 15/143 (10%)

Query: 26  ENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLH 85
            NIG V R    F +  + +V  R  W    A  +          +R   +  E + D  
Sbjct: 76  ANIGSVVRTANAFAVDTVHIVG-RRRWNRRGAMVT-----DRYQRLRHHDSTAEML-DFA 128

Query: 86  FIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIIS 145
                TA   +N            V  E     +   +IFG+E  G+T++    +   +S
Sbjct: 129 AEAGLTAVAVDNIP--------GAVPLEHTDLPRECLLIFGQEGPGITDDAKTGARLTVS 180

Query: 146 FPVNPLFPSLNISQAVLLMVWEC 168
                   S+N + A  + +   
Sbjct: 181 IAAFGSTRSINAAVAAGIAMHTW 203


>gi|239606661|gb|EEQ83648.1| RNA methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 522

 Score = 35.4 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 41/188 (21%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEK--ARSSSANADCV-----------IDSV 71
             N+G + R+ + F +    +V+ R+  P      ++S+  A+ +           + + 
Sbjct: 327 EGNVGAIIRSAYYFGVDS-IIVSTRNSAPISAVVIKASAGAAENIPILTTTNPTNFLKNT 385

Query: 72  R-----VFSNLKEAIADL-HFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIF 125
           R     +F+    A A      + T+       + +L+ ++ +  L+E         ++ 
Sbjct: 386 RMNGWKIFAAEAPAAASASQQTFGTS------NEQILSRRDVSTKLSE-----APCILML 434

Query: 126 GRERWGLTNEEIALSNAIISFPVN---------PLFPSLNISQAVLLMVWECMENSIVSS 176
           G E  GL       ++  +  P               SLN+S A  L+  E       S+
Sbjct: 435 GSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVASALLC-EAFLGDPSST 493

Query: 177 EKNVKEQN 184
            +      
Sbjct: 494 GQGRSPAE 501


>gi|326472127|gb|EGD96136.1| peroxisomal biogenesis factor 6 [Trichophyton tonsurans CBS 112818]
          Length = 1420

 Score = 35.4 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 30/115 (26%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIGM---VARAMWNFNLTQLRLVNPRDGWPSEKA---- 57
           +P+       PV+IL+      NIG      RA  +  L    + +  D      A    
Sbjct: 802 SPRAIQLGLKPVVILL-TSTQRNIGKSTVACRACADIGLHTFTI-DSYDILSEGGANGGD 859

Query: 58  ------------RSSSANAD---------CVIDSVRVFSNLKEAIADLHFIYATT 91
                       R+ +  +           V+ + R+ ++LKE +A    + ATT
Sbjct: 860 MKTEAYLKARADRAFACGSACTALLIEHIEVLTADRIVTSLKEIVASSRVVIATT 914


>gi|303274998|ref|XP_003056809.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461161|gb|EEH58454.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 292

 Score = 35.4 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 49  RDGWPSEKARSSSAN---ADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPK 105
           R  W    A + +     A    D+V+V+++L  A A   +    +A+        +   
Sbjct: 130 RSAWTCGAAFTFTVAQRFAKSSADTVKVWTSLP-AYAYEDWGAFASAQPHACSWVAVEMG 188

Query: 106 EAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISFPVNP-LFPSLNISQAVLLM 164
             A  L E     + +  + G E  GL +  +      ++ P       S N++    ++
Sbjct: 189 TDATPLEEFEHPDRAI-YVLGSEDNGLPSSVLRACAHRVALPAAEGRTASFNVAACGSVV 247

Query: 165 VW 166
           ++
Sbjct: 248 MY 249


>gi|254993163|ref|ZP_05275353.1| hypothetical protein LmonocytoFSL_09103 [Listeria monocytogenes FSL
           J2-064]
          Length = 47

 Score = 35.4 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 6/29 (20%), Positives = 13/29 (44%)

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENS 172
           +  P+     SLN+S    ++ +E +   
Sbjct: 1   MRIPMTDHIRSLNLSNTAAILAYEALRQQ 29


>gi|296805920|ref|XP_002843784.1| peroxisomal biogenesis factor 6 [Arthroderma otae CBS 113480]
 gi|238845086|gb|EEQ34748.1| peroxisomal biogenesis factor 6 [Arthroderma otae CBS 113480]
          Length = 1417

 Score = 35.4 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 28/114 (24%)

Query: 5   APQLQNSAKGPVIILVDPQLGENIG--MVAR-AMWNFNLTQLRL---------------V 46
           +P+       PV+IL+      NIG   VAR A  +  L    +               V
Sbjct: 798 SPRAIQLGLKPVVILL-TSTQRNIGKSTVARRACADIGLHTFTIDSYDILSEGGANGGDV 856

Query: 47  NPRDGWPSEKARSSSANAD---------CVIDSVRVFSNLKEAIADLHFIYATT 91
                  +   R+ +  +           V+ + R+ ++LKE +A+   I ATT
Sbjct: 857 KTEAYLKARADRAFACGSACTAVLIEHIEVLTADRIVTSLKEIVANSRVIIATT 910


>gi|315654256|ref|ZP_07907164.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315491291|gb|EFU80908.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 230

 Score = 35.4 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 123 IIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMEN 171
           ++FG E  GLT         ++         SLN+  A  + +W     
Sbjct: 174 MVFGEESQGLTPAMQNALERLVQITQYGSTRSLNVGHAAAIGIWAWRRA 222


>gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226242280|dbj|BAH52628.1| rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 322

 Score = 35.4 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 19/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---V 73
           + L +     N+G V R++  F    + +   R    +  A  +SA A   +   R   +
Sbjct: 176 VALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNL 235

Query: 74  FSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              LK+ A   +  +    A                +V+         +     RE    
Sbjct: 236 TRTLKDWASKGVQ-VVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLV----REN--- 287

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   +AI+S P+     SLN S A  +++ +     
Sbjct: 288 -------CDAILSIPMAGPVESLNASVAAGVVLADIARRR 320


>gi|311896764|dbj|BAJ29172.1| putative glutamyl-tRNA reductase [Kitasatospora setae KM-6054]
          Length = 468

 Score = 35.4 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 32  ARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIYATT 91
           ARA     +T L LV  R    +E+       A  V+D  +V     +A+AD+  + + T
Sbjct: 202 ARA----GVTDL-LVANRTPARAERLVEILGGAARVLDFAKV----PQALADVDLVISCT 252

Query: 92  A 92
            
Sbjct: 253 G 253


>gi|302531148|ref|ZP_07283490.1| RNA methyltransferase [Streptomyces sp. AA4]
 gi|302440043|gb|EFL11859.1| RNA methyltransferase [Streptomyces sp. AA4]
          Length = 219

 Score = 35.4 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 15/156 (9%)

Query: 23  QLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIA 82
           Q   NIG V R    F   ++ +V  R  W    A  +          +R   ++   + 
Sbjct: 78  QHDHNIGTVVRTANAFAAAEVHIVG-RRRWNRRGAMVT-----DRYQHLRHHEDVASLLN 131

Query: 83  DLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNA 142
                +AT A           P    +   E     +N  ++FG+E  GL+      S  
Sbjct: 132 -----FAT-AEGLTVVAVDNTPGAEPVETAELP---RNCLLLFGQEGPGLSEAAQTDSAK 182

Query: 143 IISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           ++S        S+N   A  +++   +      S+ 
Sbjct: 183 VVSIAQFGTTRSINAGVAAGIVMHAWIRQHADLSQA 218


>gi|299135282|ref|ZP_07028473.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
 gi|298590259|gb|EFI50463.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
          Length = 272

 Score = 35.4 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 19/160 (11%)

Query: 11  SAKGPVIILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKAR----SSSANADC 66
              G V++L       N+G + R+                   S +A      S++ A  
Sbjct: 118 PQDGIVLVLDQITDPHNVGAILRSAA----AFAVKAVVTTARHSPEATGVLAKSASGALE 173

Query: 67  VIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFG 126
           ++  V +  NL  A+ ++           + F +V    E +  L E       + ++ G
Sbjct: 174 LVP-VVIVQNLARALTEM---------KEHGFLTVGLDSEGSTNLAETELR-APLALVLG 222

Query: 127 RERWGLTNEEIALSNAIISFPVNPLFPSLNISQAVLLMVW 166
            E  GL          +    +     SLN+S A  L ++
Sbjct: 223 AEGKGLRQLTRETCGTVARLDMPGEIKSLNVSNATALALY 262


>gi|288958794|ref|YP_003449135.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288911102|dbj|BAI72591.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 254

 Score = 35.4 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 31/148 (20%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLK-----E 79
             N+G + R+  +F ++++ L+         K   +++NA   +        L       
Sbjct: 124 PSNLGALLRSAASFGVSRIVLLEGAAHPFHPKCLRAASNAQFAL-------TLLRGPRWA 176

Query: 80  AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           A+ D                  L   +       R     ++ +I G E  G+  +    
Sbjct: 177 AVND--------------AAGPLYALDGGGADLTRFDWPADMRLILGEEGQGVPAD---- 218

Query: 140 SNAI-ISFPVNPLFPSLNISQAVLLMVW 166
             A  +S P      SLN + AV + ++
Sbjct: 219 CPAARLSVPTTGAVESLNATVAVSVALF 246


>gi|187920945|ref|YP_001889977.1| Indigoidine synthase A family protein [Burkholderia phytofirmans
           PsJN]
 gi|187719383|gb|ACD20606.1| Indigoidine synthase A family protein [Burkholderia phytofirmans
           PsJN]
          Length = 317

 Score = 35.4 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 101 VLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIAL 139
           V   +E   V+         + +I GR R GL+N+E+ L
Sbjct: 44  VRTAREVEAVIRSLGAEPATIALIDGRIRIGLSNDELEL 82


>gi|87307651|ref|ZP_01089795.1| hypothetical protein DSM3645_29057 [Blastopirellula marina DSM
           3645]
 gi|87289821|gb|EAQ81711.1| hypothetical protein DSM3645_29057 [Blastopirellula marina DSM
           3645]
          Length = 900

 Score = 35.4 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 11/75 (14%)

Query: 168 CMENSIVSSEKNVKEQNTPA-TKGELLSFLDYLEISLEERGYFRPVEKKKKMLDDLYSIF 226
             +     +   +  +  PA  K E  +FL++L   + +       +K +  +  L    
Sbjct: 74  WQKVLNALNSGEMPPEEEPAIDKAEKANFLEHLANKMVDARRLLADQKGEITMRRLNR-- 131

Query: 227 IRPELMREEV-FLLR 240
                   E    LR
Sbjct: 132 -------REYRNTLR 139


>gi|325962136|ref|YP_004240042.1| theronine dehydrogenase-like Zn-dependent dehydrogenase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468223|gb|ADX71908.1| theronine dehydrogenase-like Zn-dependent dehydrogenase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 342

 Score = 35.4 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 29  GMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIADLHFIY 88
           GMVA  +  F L +L+LV   D  PS K  + +   D        F++  +A+AD   ++
Sbjct: 164 GMVATLLRTFPLDRLQLV---DLDPSRKQLADTLGVD--------FAHPDDALADCDIVF 212

Query: 89  ATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRE 128
             +A      +S+    +   V+    ++ + V +  G +
Sbjct: 213 HCSASQEGLERSLQLVGDEGDVIEMSWYANREVTLPLGED 252


>gi|284989407|ref|YP_003407961.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284062652|gb|ADB73590.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 269

 Score = 35.4 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 25  GENIGMVARAMWNFNLTQLRLVNPRDGWP-SEKARSSSANADCVIDSVRVFSNLKEAIAD 83
            EN+G +AR+     +  L L +PR   P   ++   S     V+     F+ L +    
Sbjct: 133 AENLGSIARSAVALGVDGLLL-DPRCADPLYRRSVRVSMG--HVL--ALPFAALPDWPGG 187

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNE-RIFSGQNVGIIFGRERWGLTNEEIALSNA 142
           L  +      +       L P E A+ L E    +     ++ G E  GLT +    +  
Sbjct: 188 LDRL-----HDAGYLTVALTPAEDAVDLAEVDPRAHPRTAVLLGAEGPGLTPQAQRAARV 242

Query: 143 IISFPVNPLFPSL 155
               P+     SL
Sbjct: 243 RARIPMRTGVDSL 255


>gi|163783767|ref|ZP_02178752.1| shikimate 5-dehydrogenase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880956|gb|EDP74475.1| shikimate 5-dehydrogenase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 282

 Score = 35.4 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 70  SVRVFSNLKEAIADLHFIYATTARNRNNFKSVLA 103
           +  V  +L++A+A+   +  TT+         L 
Sbjct: 168 NADVVDDLEDALAECQVVVNTTSVGLKEGDPPLF 201


>gi|111021435|ref|YP_704407.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
 gi|110820965|gb|ABG96249.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
          Length = 248

 Score = 35.4 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 19/160 (11%)

Query: 17  IILVDPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVR---V 73
           + L +     N+G V R++  F    + +   R    +  A  +SA A   +   R   +
Sbjct: 102 VALDNITDPRNLGAVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNL 161

Query: 74  FSNLKE-AIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGL 132
              LK+ A   +  +    A                +V+         +     RE    
Sbjct: 162 TRTLKDWASKGVQ-VVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLV----REN--- 213

Query: 133 TNEEIALSNAIISFPVNPLFPSLNISQAVLLMVWECMENS 172
                   +AI+S P+     SLN S A  +++ +     
Sbjct: 214 -------CDAILSIPMAGPVESLNASVAAGVVLADIARRR 246


>gi|302421720|ref|XP_003008690.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
 gi|261351836|gb|EEY14264.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
          Length = 610

 Score = 35.4 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 87  IYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAIISF 146
             A  + + N+ +  +   E A    E     +   ++ G E  GL+ + ++ ++  ++ 
Sbjct: 499 AVAPASGSSNSARQQVTADELAE---EDPLREKPCILVLGNEGEGLSRKIMSRASRQVTI 555

Query: 147 PVNPL----FPSLNISQAVLLMV 165
              P       SLN+S A  L+ 
Sbjct: 556 QRQPAGRSSVDSLNVSVAAALLC 578


>gi|296534733|ref|ZP_06897111.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296264940|gb|EFH11187.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 176

 Score = 35.4 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 3   PYAPQ-LQNSAKGPVI--ILVDPQLGENIGMVARAMWNFNLTQLRLV-NPRDGWPSEKAR 58
           P  P  L  +  GP +  +L       N+G +AR+   F  T L L  +PR    S+ A 
Sbjct: 82  PALPAALPQTLFGPGLLPVLDGVGNPHNLGAIARSAAFFGCTSLLLSGDPRQAGLSDSAW 141

Query: 59  SSSANADCVIDSVRVFSNLKEAI 81
            +S      + S+    +L  A+
Sbjct: 142 RTSEGGLEAL-SLYRAPDLPAAL 163


>gi|41409957|ref|NP_962793.1| hypothetical protein MAP3859 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398790|gb|AAS06409.1| hypothetical protein MAP_3859 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 219

 Score = 35.4 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 15/155 (9%)

Query: 24  LGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKARSSSANADCVIDSVRVFSNLKEAIAD 83
              NIG V R    F +  + +V  R  W    A  +          +    +  E + D
Sbjct: 79  HDANIGSVVRTANAFAVHTVHIVG-RRRWNRRGAMVT-----DRYQRLCHHDSTAELL-D 131

Query: 84  LHFIYATTARNRNNFKSVLAPKEAAIVLNERIFSGQNVGIIFGRERWGLTNEEIALSNAI 143
                  T    +N               E     +   ++FG+E  G+T++    +   
Sbjct: 132 FAAAAGLTVVAVDNVP--------GAARLEETTLPRECLLVFGQEGPGITDDTRTGATLT 183

Query: 144 ISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEK 178
           +S        S+N   A  + +   ++     S+ 
Sbjct: 184 VSIAQFGSTRSINAGVAAGIAMHAWIQQHADLSQA 218


>gi|322497647|emb|CBZ32721.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 489

 Score = 35.0 bits (80), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 121 VGIIFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           V  + G E   L+   +    + ++  P      S+N++  V +++++ +          
Sbjct: 402 VFYVLGAEDGTLSAHHVQHDVDDVVFIPTT---GSMNLAATVNVLLYDRLSKECCGVHPG 458

Query: 180 VKEQ 183
           V E 
Sbjct: 459 VAEA 462


>gi|146081402|ref|XP_001464243.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068334|emb|CAM66621.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 489

 Score = 35.0 bits (80), Expect = 9.5,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 121 VGIIFGRERWGLTNEEIAL-SNAIISFPVNPLFPSLNISQAVLLMVWECMENSIVSSEKN 179
           V  + G E   L+   +    + ++  P      S+N++  V +++++ +          
Sbjct: 402 VFYVLGAEDGTLSAHHVQHDVDDVVFIPTT---GSMNLAATVNVLLYDRLSKECCGVHPG 458

Query: 180 VKEQ 183
           V E 
Sbjct: 459 VAEA 462


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.175    0.565 

Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,174,129,373
Number of Sequences: 14124377
Number of extensions: 334029113
Number of successful extensions: 826880
Number of sequences better than 10.0: 8406
Number of HSP's better than 10.0 without gapping: 7724
Number of HSP's successfully gapped in prelim test: 2239
Number of HSP's that attempted gapping in prelim test: 805310
Number of HSP's gapped (non-prelim): 11387
length of query: 268
length of database: 4,842,793,630
effective HSP length: 137
effective length of query: 131
effective length of database: 2,907,753,981
effective search space: 380915771511
effective search space used: 380915771511
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 81 (35.4 bits)